Citrus Sinensis ID: 007283

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
Protein Sequence
MPQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEcccccEEEEEccccEEEEEccccccEEccccccccEEEEEEcccccEEEEEcccccEEEEcccccEEEcEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccccEEEEEEEccccccccccEEEEEEcccEEEEEEccccEEEEEccccccccEEEEEccccEEEEEEEcccccEEEEEEccccEEEEEcccccccccccccccEEEEEEEcccEEEEEEccccEEEEEcccccEEEEEEEEccccccEEEEEEccccEEEEEccccEEEEEccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEcEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEEcccccccEEEEEEccccEEEEEEccccEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHHcEccccccccccccccEEcccccEEEEEEccEEEEEEcccccccEEEccccccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEcEccccccccEEEEEEccccccEEEEEEccccEEEEEcccEEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEccccEEEEEEcccccccEEEEEEccccccccEEEEEEEcccccEEEEEccccEEEEEEccccccEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEccccEEEEEccccEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEccccccccEEEcccccccEEEEEEccccEEEEEccccEEEEEEcccc
Coil and Loop (DISEMBL)
mpqlaetytcvpstergrgilisghpksnsilytnGRSVIILdlsnplqvsiygehaypatvarfspngewiasadvsgTVRIWGAHNDHVLKKEFRVLSgriddlqwspdglrivacgdgkgKSLVRAFMWdsgtnvgefdghsrrvlscafkpsrpfriatcgedflvnfyegppfkfklshrghsnfvncvrfspdgskfisvssdkkgiiydgktadkigelspedghkgsvyavswspdgkqVLTASadksakvwdisednhgklkktltpsgsggvddmlvgcLWQNDFLVIVSLGGTIsifsandleksplqlsghmknvtaltvlnidpkvilsssydgLIVKWIQgigyggklqrkenSQIKCFAAIEEEIvtsgfdnkIWRVSLQgdqcgyansidigsqpkdlsvalhypelvLVSTDSGVVLLRGAEVVstinlrfpvtasaiapdgseaiigsqdgklrvysirgdtLTEEAVLEKHRGAVSviryspdvsmfasgdvnreAIVWDRVSREVKLKNMLYHTARInclawspnnsmvatgsldTCVIIYEidkpassrmtikgahlggvyglaftdehsvvssgeDACVRVWRLTPN
Flexible Loop (DISEMBL)
mpqlaetytcvpstergrgilisghpksnsILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRiddlqwspdglRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVrfspdgskfisvssdkkgiiYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASadksakvwdisednhgklkktltpsgsggVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPvtasaiapdgseaiigsqdgklRVYSIRGDTLTEEAVLEKHRGAVSviryspdvsmfasgdvnreaiVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEhsvvssgedacvrvwrltpn
Low Complexity Region (SEG)
MPQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN
Disordered region (IsUnstruct)
*******YTCV****RGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK*****************VYAVSW******************W********************GVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL***
Disordered Region (DISOPRED)
MPQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGY******KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTP*
Disordered Region (DISEMBL)
MPQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN
Disordered Region (DISPRO)
**QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	609	2.2.26 [Sep-21-2011]
P90587	601	66 kDa stress protein OS=	N/A	no	0.972	0.985	0.427	1e-134
P54686	597	WD repeat-containing prot	yes	no	0.954	0.973	0.376	1e-117
Q9VU68	608	Actin-interacting protein	yes	no	0.957	0.958	0.365	1e-111
O93277	609	WD repeat-containing prot	yes	no	0.985	0.985	0.368	1e-110
O75083	606	WD repeat-containing prot	yes	no	0.978	0.983	0.376	1e-109
Q6DIF4	607	WD repeat-containing prot	yes	no	0.977	0.980	0.367	1e-108
Q9W7F2	607	WD repeat-containing prot	N/A	no	0.977	0.980	0.369	1e-108
Q5RKI0	606	WD repeat-containing prot	yes	no	0.980	0.985	0.367	1e-107
O88342	606	WD repeat-containing prot	yes	no	0.980	0.985	0.369	1e-107
Q2KJH4	606	WD repeat-containing prot	yes	no	0.977	0.981	0.370	1e-107

>sp|P90587|WD66_PHYPO 66 kDa stress protein OS=Physarum polycephalum PE=2 SV=1

 Score =  478 bits (1231), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 259/606 (42%), Positives = 376/606 (62%), Gaps = 14/606 (2%)

Query: 4   LAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVA 63
           L   Y+  P+T RG+ +++ G PK N+ LYT G +VII ++ NP Q  IY EHA PATVA
Sbjct: 5   LKTIYSPSPATTRGKPVVLGGDPKGNNFLYTCGNAVIIRNIKNPNQADIYYEHAQPATVA 64

Query: 64  RFSPNGEWIASADVSGTVRIWGAHN-DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK 122
           +++P+G +IAS D+SGT+RIW     +H LK E +VLSG I D+ WS D  R+V  GDGK
Sbjct: 65  KYAPSGFYIASGDLSGTLRIWDTTQLEHPLKIELKVLSGPIADIAWSADSQRLVVVGDGK 124

Query: 123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182
            +    A +WDSG +VGE  GHS+ + SC FK +RPFR+ T  EDF  N++EGPPFKFK 
Sbjct: 125 ER-FGAAILWDSGASVGEITGHSKAIASCDFKATRPFRVITGAEDFQANWFEGPPFKFKH 183

Query: 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSP-EDGHKGSVYAVSW 241
           + + H+ F+ CVRFSPDG K ++V  DKKG I DGKT +K+G L+   D H   +Y+ SW
Sbjct: 184 AFKEHTRFLTCVRFSPDGEKVLTVGLDKKGFILDGKTGEKVGALAGGADAHALGIYSCSW 243

Query: 242 SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL 301
           SPD K+VLT SADKSAK+WD    + G L  T   +  GGV+  L+G LWQ D L+ V+L
Sbjct: 244 SPDSKKVLTVSADKSAKIWD----DKGTLLTTF--AFEGGVESQLLGSLWQGDTLLAVNL 297

Query: 302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK 361
            G I     N+ +     L GH K VT+L   +   K + S SYDG+I++W    G    
Sbjct: 298 NGDIFSLDQNNPKTPARTLKGHNKLVTSL-AFDTASKALYSGSYDGVILQWNLETGIAVP 356

Query: 362 LQRKENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420
           +    ++     A ++  ++V+   D+      L   Q   A    + SQP+ ++VA   
Sbjct: 357 IAGTGHTSSVTQAVVQGNKLVSVSVDDTTRFTPLNPPQYA-AQGAKLDSQPQSVAVA-QG 414

Query: 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT 480
            ++ +V T + VV+L+G +V ST  +++  T   ++ DGSE  +G++D  + +YS+ G T
Sbjct: 415 KDIAVVVTLNSVVVLQGEKVASTTAVKYQPTVVRVSVDGSEVAVGAKDNSIHIYSLSGTT 474

Query: 481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL 540
           L+E+AVL  HRG ++ I YSPD   FAS D NR+  VWD+ SR++K++  +YH AR+  L
Sbjct: 475 LSEQAVLSGHRGFLTAIAYSPDGKHFASADQNRDIFVWDKASRKIKVEGWVYHNARVTSL 534

Query: 541 AWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC 600
           AW+ N++ + TGSLD+ V ++ + +P S  + IK AH GGV  + + DEH+V S+G D  
Sbjct: 535 AWNSNSNNIVTGSLDSHVYVWSVSEP-SKHIAIKNAHRGGVNAVLWVDEHTVASAGLDCS 593

Query: 601 VRVWRL 606
           ++ W +
Sbjct: 594 IKTWTI 599

Associated with the process of cyst formation.
Physarum polycephalum (taxid: 5791)

>sp|P54686|WD42_DICDI WD repeat-containing protein 2 homolog OS=Dictyostelium discoideum GN=wdpA PE=2 SV=2

 Score =  422 bits (1086), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 226/601 (37%), Positives = 355/601 (59%), Gaps = 20/601 (3%)

Query: 11  VPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGE 70
            P+T RG+ + I+G PK  +I+Y +G S+II ++ NP+   IY EH    TVA+++P+G 
Sbjct: 12  TPATTRGKSVAINGDPKGENIVYASGSSIIIRNVKNPMVADIYYEHPCQTTVAKYAPSGN 71

Query: 71  WIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA 129
           +IAS DV G +RIW     +H+LK  ++VL+G I D+ W+ D  R+V  GDGK +    A
Sbjct: 72  YIASGDVQGNLRIWDTLQKEHILKATYKVLNGAILDIAWTSDNQRLVVVGDGKER-FGAA 130

Query: 130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK--LSHRGH 187
            +WDSG++ GE  GHS+ +LSC  K +RPFR AT  EDF VN++EGPPFKF+  ++    
Sbjct: 131 ILWDSGSSCGEITGHSKMILSCDIKSTRPFRAATGSEDFAVNWFEGPPFKFQKNIAAGDF 190

Query: 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ 247
           + FVNCVRFSPDG+K ++V +DKK  +YDGKT +K+ EL+P   H G +Y  SWS D  +
Sbjct: 191 TRFVNCVRFSPDGNKLVTVGADKKAFVYDGKTGEKLIELNPAQQHTGGIYGCSWSADNNR 250

Query: 248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISI 307
           VLTASADKS K+WD +    G+   + T      V+D  +GCLW  D L+ V+L G IS 
Sbjct: 251 VLTASADKSCKIWDTTT---GQCINSFTFGSD--VNDQQLGCLWFGDSLLSVNLAGEIST 305

Query: 308 FSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ-RKE 366
            + +D+ K    + GH K V  +   + +   + S+SYD  +++W    G          
Sbjct: 306 LNLDDVAKPSRVIKGHNKLVGTI-AFDKNAGSLYSASYDASLLQWDLSTGLATNFTGPAH 364

Query: 367 NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLV 426
            +QI       ++++T   D+ +   S+     G +  +D  +Q    +VA     +V V
Sbjct: 365 KNQITSIKINGDQLITCAMDDSVKISSISKKTYGESIGVDSPAQ----AVAFSGDVVVAV 420

Query: 427 STDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV 486
           S  + + +++G ++VS     +  T+ AI  + +E  +G +D K+ V+++ G+ LT    
Sbjct: 421 SMKT-IYVIKGGKIVSQTAATWEPTSVAI--NDTEVSVGGKDNKIHVFTLSGNNLTASHT 477

Query: 487 LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN 546
           L+ HRGA++ + YSP     ASG  NRE IVW    +E K K  + HTARIN +AWS ++
Sbjct: 478 LDNHRGAITDLSYSPCGKYLASGCSNREVIVWS--GKEAKSKGWVNHTARINAVAWSNDS 535

Query: 547 SMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 606
             VA+ SLD+ + I+ ++ P +S + +K +HLGGV  + +   + + S+G +  +++W +
Sbjct: 536 KFVASASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNEIFSAGNEGAIKIWNV 595

Query: 607 T 607
           +
Sbjct: 596 S 596

Dictyostelium discoideum (taxid: 44689)

>sp|Q9VU68|WDR1_DROME Actin-interacting protein 1 OS=Drosophila melanogaster GN=flr PE=2 SV=1

 Score =  401 bits (1030), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 222/607 (36%), Positives = 354/607 (58%), Gaps = 24/607 (3%)

Query: 8   YTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSP 67
           Y  +P T+RG+ I++   PK  + LYTNG SVII ++ NP    +Y EH+    VA++SP
Sbjct: 15  YATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAVNVAKYSP 74

Query: 68  NGEWIASADVSGTVRIWGAHN-DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL 126
           +G +IAS D SG +RIW   N +H+LK EF+ ++G I D+ WSPD  RIVA G+G+ +  
Sbjct: 75  SGFYIASGDASGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVGEGRER-F 133

Query: 127 VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRG 186
              FM ++GT+VGE  G S+ + S  F+P+RPFRI T  ED  +  +EGPPFKFK++ + 
Sbjct: 134 GHVFMSETGTSVGEISGQSKSINSADFRPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQD 193

Query: 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL-SPEDGHKGSVYAVSWSPDG 245
           HS FV  VR+SPDG  F S   D K  +YDG +++ +GE  SP   HKG VYA++W PD 
Sbjct: 194 HSRFVQAVRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSP--AHKGGVYALAWKPDS 251

Query: 246 KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG--VDDMLVGCLWQNDFLVIVSLGG 303
            Q+LT S DK+ ++W +         + L      G  VDD  V CLWQ D L+ VSL G
Sbjct: 252 TQLLTCSGDKTCRLWTVES-------RELVSEFVMGTTVDDQQVSCLWQGDNLITVSLSG 304

Query: 304 TISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ 363
            I+  +  D  K    + GH K +T L  L+ D   I + S+DG++  W  G G   ++ 
Sbjct: 305 VITYLNVADPSKPLRVVKGHNKPITVLG-LSDDRSTIYTGSHDGVVTNWNSGSGTNDRIT 363

Query: 364 -RKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANS-IDIGSQPKDLSVALHYP 421
                +QI   AA  + + T G D+ + + S++G+   Y +  + +  QP+ L++ L   
Sbjct: 364 GTGHGNQINGIAAWGDFVYTCGIDDSLRQFSVEGNS--YTDYVVKLNCQPRGLAI-LRNE 420

Query: 422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL 481
            ++ ++    + L++  + + ++ +++  ++ A+  D S+  +G  D KL +Y+++G  L
Sbjct: 421 NIIALACIKELTLVQDQKKIFSLPIKYEASSIAVNADTSDVAVGGDDQKLHIYTLKGGVL 480

Query: 482 TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD-RVSREVKLKNMLYHTARINCL 540
             +  L+ H GAV+ + YSPD+    + D +R+ +++     +    K   +H+AR+N +
Sbjct: 481 EPKVELD-HLGAVTDVSYSPDLKYLVACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTV 539

Query: 541 AWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDA 599
           AWSPN+ +VA+GSLDT +II+ +  PA   + IK AH    +  L + D ++V+S+G+D 
Sbjct: 540 AWSPNSLLVASGSLDTTIIIWSVANPAKHTI-IKNAHPQSQITRLVWLDNNTVISTGQDC 598

Query: 600 CVRVWRL 606
             +VW +
Sbjct: 599 NTKVWHV 605

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Essential for organismal and cell viability. Required for the development of normal wing cell planar polarity.

Drosophila melanogaster (taxid: 7227)

>sp|O93277|WDR1_CHICK WD repeat-containing protein 1 OS=Gallus gallus GN=WDR1 PE=2 SV=1

 Score =  399 bits (1024), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 227/616 (36%), Positives = 346/616 (56%), Gaps = 16/616 (2%)

Query: 1   MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
           MP ++ + +  +P  ERG   +I G PK N+ LYTNG+ V+I ++ NP    IY EHA+ 
Sbjct: 3   MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVVIRNIDNPAIADIYTEHAHQ 62

Query: 60  ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
             VA+++P+G +IAS DVSG +RIW     +H+LK E++  +G+I DL W+ D  RI   
Sbjct: 63  VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDLAWTEDSKRIAVV 122

Query: 119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
           G+G+ K     F+WDSG++VGE  GH++ + S   K +RP+R+AT  +D    F+EGPPF
Sbjct: 123 GEGREK-FGAVFLWDSGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPF 181

Query: 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
           KFK +   H+ FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct: 182 KFKFTLSDHTRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGGKAHDGGIYA 241

Query: 239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
           +SWSPD  Q+L+AS DK+AK+WD+     G      T +    V D  +GCLWQ D L+ 
Sbjct: 242 ISWSPDSSQLLSASGDKTAKIWDV-----GANSVVSTFNMGSNVLDQQLGCLWQKDHLLS 296

Query: 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGIG 357
           +SL G I+    N+ +K    + GH K++  LTV  N     I S S DG I  W    G
Sbjct: 297 LSLSGYINYLDKNNPDKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSNDGHINYWDSDTG 356

Query: 358 YGGKLQRKENSQIKCFAAIEE--EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS 415
                  K ++      A++E  ++VT   D+ +   +L        +++ +  QPK L+
Sbjct: 357 ENDGFSGKGHTNQVSRMAVDEMDQLVTCSMDDTVRYTNLSKRDYSGQDAVKMDVQPKCLA 416

Query: 416 VALHYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVY 474
           V      +VL      +VL++  +    I +L +   A A+ P G    +G  DG +R+Y
Sbjct: 417 VGPGGYTVVLCIGQ--IVLMKDKKKCFAIDDLGYEPEAVAVHPGGGSVAVGGTDGNVRLY 474

Query: 475 SIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT 534
           SI+G +L  +    + +G V+ + YS D +  A  D N+   V+      V+      H 
Sbjct: 475 SIQGTSLKSDDKTLEAKGPVTDLAYSHDGAFLAVCDANKVVTVFSVPDGYVEHNVFYGHH 534

Query: 535 ARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVV 593
           A++ C+AWSP+N   A+G +D  V ++ +  P  +R+ I  AH L  V GLA+ DEH++V
Sbjct: 535 AKVVCIAWSPDNEHFASGGMDMMVYVWTVSDP-ETRIKIPDAHRLHHVSGLAWLDEHTLV 593

Query: 594 SSGEDACVRVWRLTPN 609
           ++  DA V+ W ++ N
Sbjct: 594 TTSHDASVKEWSISYN 609

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Gallus gallus (taxid: 9031)

>sp|O75083|WDR1_HUMAN WD repeat-containing protein 1 OS=Homo sapiens GN=WDR1 PE=1 SV=4

 Score =  395 bits (1014), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 232/616 (37%), Positives = 348/616 (56%), Gaps = 20/616 (3%)

Query: 1   MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
           MP ++ + +  +P  ERG   +I G PK N+ LYTNG+ VI+ ++ NP    IY EHA+ 
Sbjct: 1   MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ 60

Query: 60  ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
             VA+++P+G +IAS DVSG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct: 61  VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
           G+G+ K     F+WDSG++VGE  GH++ + S   K SRP+R+AT  +D    F+EGPPF
Sbjct: 121 GEGREK-FGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPF 179

Query: 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
           KFK +   HS FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct: 180 KFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYA 239

Query: 239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
           +SWSPD   +L+AS DK++K+WD+S ++      +  P GS  +D  L GCLWQ D L+ 
Sbjct: 240 ISWSPDSTHLLSASGDKTSKIWDVSVNS----VVSTFPMGSTVLDQQL-GCLWQKDHLLS 294

Query: 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGIG 357
           VSL G I+    N+  K    + GH K++  LTV  N     I S S+DG I  W    G
Sbjct: 295 VSLSGYINYLDRNNPSKPLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETG 354

Query: 358 YGGKLQRKENSQIKCFAAIEE--EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS 415
                  K ++       ++E  ++++   D+ +   SL          + +  QPK ++
Sbjct: 355 ENDSFAGKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQGVVKLDVQPKCVA 414

Query: 416 VAL-HYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRV 473
           V    Y  +V +     +VLL+      +I N  +     A+ P G    IG  DG +R+
Sbjct: 415 VGPGGYAVVVCIGQ---IVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNVRL 471

Query: 474 YSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY- 532
           YSI G TL +E  L + +G V+ + YS D +  A  D ++   V+  V+      N+ Y 
Sbjct: 472 YSILGTTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVF-SVADGYSENNVFYG 530

Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHS 591
           H A+I CLAWSP+N   A+G +D  V ++ +  P  +R+ I+ AH L  V  LA+ DEH+
Sbjct: 531 HHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETRVKIQDAHRLHHVSSLAWLDEHT 589

Query: 592 VVSSGEDACVRVWRLT 607
           +V++  DA V+ W +T
Sbjct: 590 LVTTSHDASVKEWTIT 605

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Homo sapiens (taxid: 9606)

>sp|Q6DIF4|WDR1_XENTR WD repeat-containing protein 1 OS=Xenopus tropicalis GN=wdr1 PE=2 SV=1

 Score =  392 bits (1008), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 227/617 (36%), Positives = 348/617 (56%), Gaps = 22/617 (3%)

Query: 1   MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
           MP +L + +  +P  ERG   +I+G PK N+ LYTNG+SVII ++ NP    IY EHA+P
Sbjct: 1   MPYELKKVFASLPQVERGVAKIITGDPKGNNFLYTNGKSVIIRNIENPAIADIYTEHAHP 60

Query: 60  ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
             VAR++P+G +IAS D SG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct: 61  VVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
           G+G+ K     F+WD+G++VGE  G+ + + S   K +RP+R+ T  +D    F+EGPPF
Sbjct: 121 GEGREK-FGSVFLWDTGSSVGEISGNIKVINSVDIKQTRPYRLVTGSDDNCCAFFEGPPF 179

Query: 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
           KFK +   HS FVNCVRFSPDGS+  S  +D +  +YDGKT +K+G L     H G +YA
Sbjct: 180 KFKFTMADHSRFVNCVRFSPDGSRLASAGADGQIFLYDGKTGEKVGNLGGSKAHDGGIYA 239

Query: 239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
           VSWS D  Q+L+AS DK+AK+WD++ ++        T      V D  +GCLWQ D+L+ 
Sbjct: 240 VSWSADSTQLLSASGDKTAKIWDVAANS-----AVTTFHLGTEVLDQQLGCLWQKDYLLS 294

Query: 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK-VILSSSYDGLIVKWIQGIG 357
           VSL G I+    N+  +    + GH K++  +TV N D +  I + S+DG I  W    G
Sbjct: 295 VSLSGYINYLDKNNPSRPLRVIKGHNKSIQCMTVHNSDGRSTIYTGSHDGHINYWDAETG 354

Query: 358 ----YGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKD 413
               + GK    + S++   ++   +++T   D+ +   SL       + S+ +  QPK 
Sbjct: 355 ENDTFTGKGHTNQVSRMDLDSS--NQLITCSMDDTVRYTSLTSKDYSSSESVKMDVQPK- 411

Query: 414 LSVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLR 472
             VA+     V+      +VLL+  + V  I+ L +   A AI        +G  DG + 
Sbjct: 412 -CVAVGSGGYVVTLCIGQIVLLKDKKKVFAIDSLDYEPEAVAIHKGSGTVAVGGVDGNVH 470

Query: 473 VYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY 532
           +YSI+G++L +E      +GAV+ + YS D +  A  D N+   V++ V+     +N+ Y
Sbjct: 471 LYSIQGNSLKDEGKSLPVKGAVTDLAYSHDGAFLAVTDANKVVTVFN-VADGYSEQNVYY 529

Query: 533 -HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEH 590
            H A+   +AWSP+N   A+  +D  V ++ +  P  +R+ I  AH L  V  LA+ DEH
Sbjct: 530 GHHAKAVSVAWSPDNEHFASSGMDMMVYVWTLSDP-DARIKIPDAHRLHHVSSLAWLDEH 588

Query: 591 SVVSSGEDACVRVWRLT 607
           ++ +   DACV+ W +T
Sbjct: 589 TLATVSHDACVKQWTVT 605

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin.

Xenopus tropicalis (taxid: 8364)

>sp|Q9W7F2|WDR1A_XENLA WD repeat-containing protein 1-A OS=Xenopus laevis GN=wdr1-a PE=2 SV=2

 Score =  391 bits (1005), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 228/617 (36%), Positives = 344/617 (55%), Gaps = 22/617 (3%)

Query: 1   MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
           MP +L + +  +P  ERG   +++G PK N+ LYTNG+SVII ++ NP    IY EHA+ 
Sbjct: 1   MPYELKKVFASLPQMERGVAKILAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQ 60

Query: 60  ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
           A VAR++P+G +IAS D SG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct: 61  AVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
           G+G+ K     F+WD+G++VGE  G+ + + S   K +RP+R+ T  +D    F EGPPF
Sbjct: 121 GEGREK-FASVFLWDTGSSVGEITGNIKVINSVDIKQTRPYRLVTGSDDNCCAFLEGPPF 179

Query: 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
           KFK +   HS FVNCVRFSPDGSK  S  +D +  +YDGKT +K+  L     H G +YA
Sbjct: 180 KFKFTMSDHSRFVNCVRFSPDGSKLASAGADGQIFLYDGKTGEKVCSLGGSKAHDGGIYA 239

Query: 239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
           VSWSPDG Q+L+AS DK+ K+WD++ ++        T +    V D  +GCLWQ D+L+ 
Sbjct: 240 VSWSPDGTQLLSASGDKTTKIWDVAANS-----AVTTFNLGSDVLDQQLGCLWQKDYLLS 294

Query: 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK-VILSSSYDGLIVKWIQGIG 357
           VSL G I+    N+  +    + GH K++  +TV N D +  I + S+DG I  W    G
Sbjct: 295 VSLSGYINYLDKNNPARPLRVIKGHNKSIQCMTVNNSDGRSTIYTGSHDGHINYWDAETG 354

Query: 358 ----YGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKD 413
               + GK    + S +        +++T   D+ +   SL       + S+ +  QPK 
Sbjct: 355 ENDTFTGKGHTNQVSSMDLDGC--NQLITCSMDDTLRYTSLISKDYSSSESVKMDVQPK- 411

Query: 414 LSVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLR 472
             VA+     V+      +VLL+  + V  I+ L +   A AI        +G  DGK+ 
Sbjct: 412 -CVAVGSGGYVVTVCIGQIVLLKDKKKVFAIDSLDYEPEAVAIHKGSGTVAVGGADGKVH 470

Query: 473 VYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY 532
           +YSI+G++L +E      +GAV+ + YS D +  A  D N+   V+  V+     KN  Y
Sbjct: 471 LYSIQGNSLKDEGKTLPAKGAVTDLAYSHDGAFLAVTDANKVVTVF-SVADGYSEKNSYY 529

Query: 533 -HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEH 590
            H A+   +AWSP+N   A+  +D  V ++ +  P  +R+ +  AH L  V  LA+ DEH
Sbjct: 530 GHHAKALSVAWSPDNEHFASSGMDMMVYVWTLSDP-DTRIKMPDAHRLHHVSSLAWLDEH 588

Query: 591 SVVSSGEDACVRVWRLT 607
           ++ +   DACV+ W +T
Sbjct: 589 TLATVSHDACVKQWTVT 605

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Doesn't sever actin filaments alone, but caps the barbed ends of filaments severed by cofilin, which blocks annealing and depolymerization and allows more extensive severing by cofilin.

Xenopus laevis (taxid: 8355)

>sp|Q5RKI0|WDR1_RAT WD repeat-containing protein 1 OS=Rattus norvegicus GN=Wdr1 PE=1 SV=3

 Score =  389 bits (1000), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 226/615 (36%), Positives = 346/615 (56%), Gaps = 18/615 (2%)

Query: 1   MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
           MP ++ + +  +P  ERG   ++ G PK ++ LYTNG+ VI+ ++ NP    IY EHA+ 
Sbjct: 1   MPYEIKKVFASLPQVERGVSKILGGDPKGDNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 60

Query: 60  ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
             VA+++P+G +IAS D+SG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct: 61  VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHILKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
           G+G+ K     F+WD+G++VGE  GH++ + S   K +RP+R+AT  +D    F+EGPPF
Sbjct: 121 GEGREK-FGAVFLWDTGSSVGEITGHNKVINSVDIKQNRPYRLATGSDDNCAAFFEGPPF 179

Query: 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
           KFK +   HS FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct: 180 KFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYA 239

Query: 239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
           +SWSPD   +L+AS DK++K+WD+   N   +  T  P GS  +D  L GCLWQ D L+ 
Sbjct: 240 ISWSPDSTHLLSASGDKTSKIWDV---NVNSVVSTF-PMGSNVLDQQL-GCLWQKDHLLS 294

Query: 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGIG 357
           +SL G I+    N+  K    + GH K++  LTV  N     I S S+DG I  W    G
Sbjct: 295 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETG 354

Query: 358 YGGKLQRKENSQIKCFAAIEE--EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS 415
                  K ++       ++E  ++V+   D+ +   +L          + +  QPK   
Sbjct: 355 ENDSFSGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPK--C 412

Query: 416 VALHYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVY 474
           VA+      +V     +VLL+  +   +I N  +     A+ P G    +G  DG +RVY
Sbjct: 413 VAVGPGGYTVVVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGSDGNVRVY 472

Query: 475 SIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-H 533
           SI G TL +E  L + +G V+ + YS D +  A  D ++   V+  V+      N+ Y H
Sbjct: 473 SILGATLKDEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVF-SVADGYSENNVFYGH 531

Query: 534 TARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSV 592
            A+I CLAWSP+N   A+G +D  V ++ +  P  +++ I+ AH L  V  LA+ DEH++
Sbjct: 532 HAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETKVKIQDAHRLHHVSSLAWLDEHTL 590

Query: 593 VSSGEDACVRVWRLT 607
           V++  DA V+ W +T
Sbjct: 591 VTTSHDASVKEWTIT 605

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Rattus norvegicus (taxid: 10116)

>sp|O88342|WDR1_MOUSE WD repeat-containing protein 1 OS=Mus musculus GN=Wdr1 PE=1 SV=3

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 227/615 (36%), Positives = 344/615 (55%), Gaps = 18/615 (2%)

Query: 1   MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
           MP ++ + +  +P  ERG   ++ G PK +  LYTNG+ VI+ ++ NP    IY EHA+ 
Sbjct: 1   MPYEIKKVFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60

Query: 60  ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
             VA+++P+G +IAS D+SG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct: 61  VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
           G+G+ K     F+WD+G++VGE  GH++ + S   K +RP+R+AT  +D    F+EGPPF
Sbjct: 121 GEGREK-FGAVFLWDTGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPF 179

Query: 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
           KFK +   HS FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct: 180 KFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGESKAHDGGIYA 239

Query: 239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
           +SWSPD   +L+AS DK++K+WD+   N   +  T  P GS  +D  L GCLWQ D L+ 
Sbjct: 240 ISWSPDSTHLLSASGDKTSKIWDV---NVNSVVSTF-PMGSNVLDQQL-GCLWQKDHLLS 294

Query: 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGIG 357
           +SL G I+    N+  K    + GH K++  LTV  N     I S S+DG I  W    G
Sbjct: 295 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHINYWDSETG 354

Query: 358 YGGKLQRK-ENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS 415
                  K   +Q+      E E++V+   D+ +   +L          + +  QPK   
Sbjct: 355 ENDSFSGKGHTNQVSRMTVNESEQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPK--C 412

Query: 416 VALHYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVY 474
           VA+      +V     +VLL+  +   +I N  +     A+ P G    +G  DG +RVY
Sbjct: 413 VAVGPGGYTVVVCIGQIVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGTDGNVRVY 472

Query: 475 SIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-H 533
           SI   TL +E  L + +G V+ + YS D +  A  D ++   V+  V+      N+ Y H
Sbjct: 473 SILASTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVF-SVADGYSENNVFYGH 531

Query: 534 TARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSV 592
            A+I CLAWSP+N   A+G +D  V ++ +  P  +++ I+ AH L  V  LA+ DEH++
Sbjct: 532 HAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETKVKIQDAHRLHHVSSLAWLDEHTL 590

Query: 593 VSSGEDACVRVWRLT 607
           V++  DA V+ W +T
Sbjct: 591 VTTSHDASVKEWTIT 605

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Mus musculus (taxid: 10090)

>sp|Q2KJH4|WDR1_BOVIN WD repeat-containing protein 1 OS=Bos taurus GN=WDR1 PE=2 SV=3

 Score =  389 bits (998), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 228/615 (37%), Positives = 344/615 (55%), Gaps = 20/615 (3%)

Query: 1   MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
           MP ++ + +  +P  ERG   ++ G PK NS LYTNG+ VI+ ++ NP    IY EHA+ 
Sbjct: 1   MPYEIKKVFASLPQVERGVSKIVGGDPKGNSFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60

Query: 60  ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
             VA+++P+G +IAS DVSG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct: 61  VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query: 119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
           G+G+ K     F+WDSG++VGE  GH++ + S   K SRP+R+ T  +D    F+EGPPF
Sbjct: 121 GEGREK-FGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLVTGSDDNCAAFFEGPPF 179

Query: 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
           KFK +   H  FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct: 180 KFKFTISDHGRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYA 239

Query: 239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
           +SWSPD   +L+AS DK++K+WD+   N   +  T T  GS  +D  L GCLWQ D L+ 
Sbjct: 240 ISWSPDSTHLLSASGDKTSKIWDV---NVNSVVNTFT-MGSNVLDQQL-GCLWQKDHLLS 294

Query: 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGIG 357
           +SL G I+    N+  K    + GH K++  LTV  N     I S S+DG I  W    G
Sbjct: 295 ISLSGYINYLDKNNPSKPLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSETG 354

Query: 358 YGGKLQRKENSQIKCFAAIEE--EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS 415
                  K ++       ++E  ++V+   D+ +   +L          + +  QPK L+
Sbjct: 355 ENDSFAGKGHTNQVSRMTVDEHGQLVSCSMDDTVRYTNLTLRDYSGQGVVKLDVQPKCLA 414

Query: 416 VAL-HYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRV 473
           V    Y  +V +     +VLL+      +I N  +     A+ P G    +G  DG +R+
Sbjct: 415 VGPGGYTVVVCIGQ---IVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNVRL 471

Query: 474 YSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY- 532
           YSI G TL +E  L + +G V+ + +S D +  A  D ++   V+  V+      N+ Y 
Sbjct: 472 YSILGTTLKDEGKLLEAKGPVTDLAFSHDGAFLAVCDASKVVTVF-SVADGYSENNVFYG 530

Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHS 591
           H A+I CLAWSP+N   A+G +D  V ++ +  P  +R+ I+ AH L  V  LA+ DEH+
Sbjct: 531 HHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETRVKIQDAHRLHHVSSLAWLDEHT 589

Query: 592 VVSSGEDACVRVWRL 606
           +V++  DA V+ W +
Sbjct: 590 LVTTSHDASVKEWTI 604

Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	609
255584820	611	WD-repeat protein, putative [Ricinus com	1.0	0.996	0.850	0.0
224118700	609	predicted protein [Populus trichocarpa]	1.0	1.0	0.844	0.0
224135493	609	predicted protein [Populus trichocarpa]	1.0	1.0	0.839	0.0
225456106	609	PREDICTED: 66 kDa stress protein [Vitis	1.0	1.0	0.840	0.0
449497501	611	PREDICTED: 66 kDa stress protein-like [C	0.998	0.995	0.815	0.0
449439121	616	PREDICTED: LOW QUALITY PROTEIN: 66 kDa s	0.998	0.987	0.809	0.0
356527884	610	PREDICTED: 66 kDa stress protein-like [G	0.995	0.993	0.815	0.0
356511267	610	PREDICTED: 66 kDa stress protein-like [G	0.995	0.993	0.816	0.0
357521569	611	66 kDa stress protein [Medicago truncatu	0.995	0.991	0.806	0.0
22331145	609	transducin/WD40 domain-containing protei	0.996	0.996	0.784	0.0

>gi|255584820|ref|XP_002533127.1| WD-repeat protein, putative [Ricinus communis] gi|223527071|gb|EEF29254.1| WD-repeat protein, putative [Ricinus communis]

 Score = 1078 bits (2787), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 518/609 (85%), Positives = 563/609 (92%)

Query: 1   MPQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPA 60
           M Q++ETY CVPSTERGRGILISG+PKSNSILYTN RSV+IL+L NPL VS+YG+H Y A
Sbjct: 1   MAQISETYACVPSTERGRGILISGNPKSNSILYTNNRSVLILNLDNPLDVSVYGDHGYQA 60

Query: 61  TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD 120
           TVAR+SPNGEWIASADVSGTVRIWGA+NDHVLKKEF+VLSGRIDDLQWSPDGLRIVACGD
Sbjct: 61  TVARYSPNGEWIASADVSGTVRIWGAYNDHVLKKEFKVLSGRIDDLQWSPDGLRIVACGD 120

Query: 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF 180
           GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSC FKP+RPFRI TCGEDFLVNFYEGPPFKF
Sbjct: 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCGFKPTRPFRIVTCGEDFLVNFYEGPPFKF 180

Query: 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240
           KLS R HSNFVNCVR+SPDGSKFISVSSDKKGI++DGKT +KIGELS  DGHKGS+YAVS
Sbjct: 181 KLSRRDHSNFVNCVRYSPDGSKFISVSSDKKGILFDGKTGEKIGELSSGDGHKGSIYAVS 240

Query: 241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS 300
           WSPDGKQVLTASADKSAKVW+I +D +GKLKKTLT SGSGG+DDMLVGCLWQND LV VS
Sbjct: 241 WSPDGKQVLTASADKSAKVWEICDDGNGKLKKTLTCSGSGGLDDMLVGCLWQNDHLVTVS 300

Query: 301 LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG 360
           LGGTISIFSANDL+K+P Q+SGHMKNVT+L VL   PK ILSSSYDGLIVKWIQGIGY  
Sbjct: 301 LGGTISIFSANDLDKTPQQISGHMKNVTSLAVLKNVPKTILSSSYDGLIVKWIQGIGYSC 360

Query: 361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420
           K+ RKEN+QIKC AA+EEEIVTSGFDNKIWRV  QGDQCG A+SIDIGSQPKDLS+AL  
Sbjct: 361 KVHRKENTQIKCLAAVEEEIVTSGFDNKIWRVHFQGDQCGGADSIDIGSQPKDLSLALLC 420

Query: 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT 480
           PELVLV+ DSGVV+LRG ++VSTI+L F VTASA+APDGSEAIIG QDGKL +YS+ GDT
Sbjct: 421 PELVLVTIDSGVVMLRGTKIVSTIDLGFAVTASAVAPDGSEAIIGGQDGKLHIYSVMGDT 480

Query: 481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL 540
           L EEAVLEKHRGAVSVIRYSPDVSMFASGD NREAIVWDRVSREVKLKNMLYHTARINCL
Sbjct: 481 LKEEAVLEKHRGAVSVIRYSPDVSMFASGDANREAIVWDRVSREVKLKNMLYHTARINCL 540

Query: 541 AWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC 600
           AWSP++SMVATGSLDTCVIIYE+DKPA+SR TIKGAHLGGVYGLAFTD+ SVVSSGEDAC
Sbjct: 541 AWSPDSSMVATGSLDTCVIIYEVDKPATSRRTIKGAHLGGVYGLAFTDQLSVVSSGEDAC 600

Query: 601 VRVWRLTPN 609
           VR+W+L+P 
Sbjct: 601 VRLWKLSPQ 609

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118700|ref|XP_002317885.1| predicted protein [Populus trichocarpa] gi|222858558|gb|EEE96105.1| predicted protein [Populus trichocarpa]

 Score = 1074 bits (2777), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/609 (84%), Positives = 560/609 (91%)

Query: 1   MPQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPA 60
           M +LAETY CVPSTERGRGILISGHPK+N ILYTN RS++IL+L NPL VS+YGEHAY A
Sbjct: 1   MTELAETYACVPSTERGRGILISGHPKTNKILYTNNRSILILNLDNPLDVSVYGEHAYQA 60

Query: 61  TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD 120
           TVAR+SPNGEWIASADVSGTVRIWGA+NDHVLKKEF+VL+GRIDDLQWSPDGLRIVA GD
Sbjct: 61  TVARYSPNGEWIASADVSGTVRIWGAYNDHVLKKEFKVLTGRIDDLQWSPDGLRIVASGD 120

Query: 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF 180
           GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKP+RPFRI TCGEDFLVNFYEGPPFKF
Sbjct: 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKF 180

Query: 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240
           K SHR HSNFVNCVRFSPDGSKFISVSSDKKGI++DGKT +KIG++S EDGHKGS+YAVS
Sbjct: 181 KSSHRDHSNFVNCVRFSPDGSKFISVSSDKKGILFDGKTGEKIGQISSEDGHKGSIYAVS 240

Query: 241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS 300
           WSPDGKQVLT SADKSAKVW+I +D  GKL KTLT SGSGGVDDMLVGCLWQND LV VS
Sbjct: 241 WSPDGKQVLTVSADKSAKVWEICDDGSGKLTKTLTSSGSGGVDDMLVGCLWQNDHLVTVS 300

Query: 301 LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG 360
           LGGTISIFSA+DL+KSPL+++GHMKNVT+L+VL   PK ILSSSYDGLI+KWIQGIGY  
Sbjct: 301 LGGTISIFSASDLDKSPLKIAGHMKNVTSLSVLKNVPKTILSSSYDGLIIKWIQGIGYSS 360

Query: 361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420
           KLQRKEN+QIKC AA EEEIVTSGFDNKIWRV L  DQCG A+SID+G+QPKD+S+AL  
Sbjct: 361 KLQRKENTQIKCLAAAEEEIVTSGFDNKIWRVHLLDDQCGDADSIDVGNQPKDISLALLC 420

Query: 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT 480
           PEL LV+ +SGVV+LRG +VVSTINL F VTASAIAPDGSEAIIG  DGKL +YS+ GDT
Sbjct: 421 PELALVTIESGVVMLRGTKVVSTINLGFAVTASAIAPDGSEAIIGGLDGKLHIYSVTGDT 480

Query: 481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL 540
           LTEEAVLEKHRGA+SVIRYSPD SMFASGD+NREA+VWDRVSREVKLKNMLYHTARINCL
Sbjct: 481 LTEEAVLEKHRGAISVIRYSPDDSMFASGDLNREAVVWDRVSREVKLKNMLYHTARINCL 540

Query: 541 AWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC 600
           AWSP++SMVATGSLD CVIIYEIDKPASSRMTIKGAHLGGVYGLAF D+HSVVSSGEDAC
Sbjct: 541 AWSPDSSMVATGSLDNCVIIYEIDKPASSRMTIKGAHLGGVYGLAFADDHSVVSSGEDAC 600

Query: 601 VRVWRLTPN 609
           VRVWR+ P 
Sbjct: 601 VRVWRVNPQ 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135493|ref|XP_002322087.1| predicted protein [Populus trichocarpa] gi|222869083|gb|EEF06214.1| predicted protein [Populus trichocarpa]

 Score = 1070 bits (2767), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 511/609 (83%), Positives = 558/609 (91%)

Query: 1   MPQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPA 60
           M +LAETY CVPSTERGRGILISGHPK+N ILYTN RS++IL+L NPL VS+YGEHAY A
Sbjct: 1   MTELAETYACVPSTERGRGILISGHPKTNKILYTNNRSILILNLDNPLDVSVYGEHAYQA 60

Query: 61  TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD 120
           TVAR+SPNGEWIASADVSGTVRIWGA+NDHVLKKEF+VL+GRIDDLQWSPDGLRIVA GD
Sbjct: 61  TVARYSPNGEWIASADVSGTVRIWGAYNDHVLKKEFKVLTGRIDDLQWSPDGLRIVASGD 120

Query: 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF 180
           GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKP+RPFRI TCGEDFLVNFYEGPPFKF
Sbjct: 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKF 180

Query: 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240
           K SHR HSNFVNC+RFSPDGSKFISVSSDKKGI++DGKT +KIGELS EDGHKGS+YAVS
Sbjct: 181 KSSHRDHSNFVNCIRFSPDGSKFISVSSDKKGILFDGKTGEKIGELSSEDGHKGSIYAVS 240

Query: 241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS 300
           WSPDGKQVLT SADKSAKVW+I +D  GKL KTLT S SGGVDDMLV CLWQND LV VS
Sbjct: 241 WSPDGKQVLTVSADKSAKVWEICDDGSGKLTKTLTSSDSGGVDDMLVSCLWQNDHLVTVS 300

Query: 301 LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG 360
           LGGTIS+FSA+DL KS LQ+SGHMKNVT+L+VL   PK ILSSSYDGLIVKWIQGIGY G
Sbjct: 301 LGGTISVFSASDLGKSALQISGHMKNVTSLSVLKNVPKTILSSSYDGLIVKWIQGIGYSG 360

Query: 361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420
           KL+RKENSQIKC AA EEE++TSGFDNK+WRV   GDQCG A+SID+ SQPKD+S+AL  
Sbjct: 361 KLRRKENSQIKCLAAAEEEVITSGFDNKLWRVRFLGDQCGDADSIDVRSQPKDISLALLC 420

Query: 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT 480
           PEL LV+ DSGVV++RG +VVSTINL F VTASAI+PDGSEAIIG QDGKL +YS+ GDT
Sbjct: 421 PELALVAIDSGVVMIRGTKVVSTINLDFAVTASAISPDGSEAIIGGQDGKLHIYSVTGDT 480

Query: 481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL 540
           LTE+AVLEKHRGAVSVIRYSPDVSMFASGD+NREA+VWDR SREVKLKNMLYHTARINCL
Sbjct: 481 LTEDAVLEKHRGAVSVIRYSPDVSMFASGDLNREAVVWDRASREVKLKNMLYHTARINCL 540

Query: 541 AWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC 600
           AWSP++SMVATGSLDTC+IIYEIDKPASSRMTIKGAHLGGVYGLAFTD+ SVVSSGEDAC
Sbjct: 541 AWSPDSSMVATGSLDTCIIIYEIDKPASSRMTIKGAHLGGVYGLAFTDDRSVVSSGEDAC 600

Query: 601 VRVWRLTPN 609
           VRVW++ P 
Sbjct: 601 VRVWKVNPQ 609

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456106|ref|XP_002281466.1| PREDICTED: 66 kDa stress protein [Vitis vinifera] gi|297734297|emb|CBI15544.3| unnamed protein product [Vitis vinifera]

 Score = 1056 bits (2731), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 512/609 (84%), Positives = 558/609 (91%)

Query: 1   MPQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPA 60
           MP+L+ETY CVPSTERGRGILISG PKSN+ILYTNGRSVII  L  PL+VSIYGEHAY A
Sbjct: 1   MPELSETYACVPSTERGRGILISGDPKSNAILYTNGRSVIIRYLHKPLEVSIYGEHAYQA 60

Query: 61  TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD 120
           TVARFSPNGEWIASADVSGTVRIWG HNDHVLKKEFRVLSGRIDDLQWS DG+RIV  GD
Sbjct: 61  TVARFSPNGEWIASADVSGTVRIWGTHNDHVLKKEFRVLSGRIDDLQWSADGMRIVVSGD 120

Query: 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF 180
           GKGKS VRAFMWDSG+NVGEFDGHS+RVLSCAFKP+RPFRI TCGEDFLVNFYEGPPFKF
Sbjct: 121 GKGKSFVRAFMWDSGSNVGEFDGHSKRVLSCAFKPTRPFRIVTCGEDFLVNFYEGPPFKF 180

Query: 181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS 240
           K SHR HSNFVNC+R+SPDGSKFISVSSDKKG+IYDGKT +KIGELS EDGHKGS+YAVS
Sbjct: 181 KQSHRHHSNFVNCIRYSPDGSKFISVSSDKKGVIYDGKTGEKIGELSSEDGHKGSIYAVS 240

Query: 241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS 300
           WSPD KQVLT SADKSAKVW+ISED +GK+KKTLT  GSGGV+DMLVGCLWQND LV +S
Sbjct: 241 WSPDSKQVLTVSADKSAKVWEISEDGNGKVKKTLTCPGSGGVEDMLVGCLWQNDHLVTIS 300

Query: 301 LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG 360
           LGGT+SIFSA+DL+K PL  SGHMKNV +L VL  +PKV+LS+SYDGLI+KWIQGIGY G
Sbjct: 301 LGGTVSIFSASDLDKGPLSFSGHMKNVNSLAVLKSNPKVMLSTSYDGLIIKWIQGIGYSG 360

Query: 361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY 420
           +L RKENSQIKCFAA+EEEIV+SGFDNKIWRVSLQGDQCG A+ +DIGSQPKDLS++L  
Sbjct: 361 RLDRKENSQIKCFAAVEEEIVSSGFDNKIWRVSLQGDQCGDADCVDIGSQPKDLSLSLLS 420

Query: 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT 480
           PEL LVSTDSGVV+LRG  VVSTINL FPV AS I+PDGSEAIIG QDGKL +YS+ GDT
Sbjct: 421 PELALVSTDSGVVILRGTNVVSTINLGFPVAASVISPDGSEAIIGGQDGKLHIYSVTGDT 480

Query: 481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL 540
           L EEAVLEKHRGA++VIRYSPDVSMFASGD NREA+VWDR SREV++KNMLYHTARINCL
Sbjct: 481 LKEEAVLEKHRGAITVIRYSPDVSMFASGDANREAVVWDRASREVRVKNMLYHTARINCL 540

Query: 541 AWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC 600
           AWSP+NSMVATGSLDTCVIIYEIDKPASSR+TIKGAHLGGVYGLAFTD+ SVVSSGEDAC
Sbjct: 541 AWSPDNSMVATGSLDTCVIIYEIDKPASSRVTIKGAHLGGVYGLAFTDDTSVVSSGEDAC 600

Query: 601 VRVWRLTPN 609
           VRVW+LTP 
Sbjct: 601 VRVWKLTPQ 609

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449497501|ref|XP_004160420.1| PREDICTED: 66 kDa stress protein-like [Cucumis sativus]

 Score = 1055 bits (2727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/608 (81%), Positives = 558/608 (91%)

Query: 2   PQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPAT 61
           P+L+ETY CVPSTERGRGILISGHPK+NS+LYTNGRSV+IL+L NPL+VS+Y EH YPAT
Sbjct: 4   PELSETYACVPSTERGRGILISGHPKTNSVLYTNGRSVMILNLDNPLEVSVYAEHGYPAT 63

Query: 62  VARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDG 121
           VAR+SPNGEWIASADVSGTVRIWG H   VLKKEF+VLSGRIDDLQWSPDG+RIVACG+G
Sbjct: 64  VARYSPNGEWIASADVSGTVRIWGTHIGFVLKKEFKVLSGRIDDLQWSPDGMRIVACGEG 123

Query: 122 KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK 181
           KGKS VRAFMWDSGTNVGEFDGHSRRVLSCAFKP+RPFRIATCGEDFLVNFYEGPPF+FK
Sbjct: 124 KGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIATCGEDFLVNFYEGPPFRFK 183

Query: 182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSW 241
           LS R HSNFVNC+RFSPDGSKFI+VSSDKKGIIYD KT DK+GELS +DGHKGS+YAVSW
Sbjct: 184 LSLRDHSNFVNCLRFSPDGSKFITVSSDKKGIIYDAKTGDKMGELSSDDGHKGSIYAVSW 243

Query: 242 SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL 301
           S DGK+VLT SADK+AKVW+IS+D +GKL+KTLT  G+GGVDDMLVGCLWQN  +V VSL
Sbjct: 244 SSDGKRVLTVSADKTAKVWEISDDGNGKLEKTLTSPGTGGVDDMLVGCLWQNQHIVTVSL 303

Query: 302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK 361
           GGTIS+FSA+DL+KSP+ LSGHMKNVT+L VL  DPKVILS+SYDG+I+KWIQGIGY GK
Sbjct: 304 GGTISLFSASDLDKSPVILSGHMKNVTSLVVLKSDPKVILSTSYDGVIIKWIQGIGYSGK 363

Query: 362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP 421
           LQR+ENSQIKCFAA+E+E+VTSGFDNK+WRVS++  QCG A +ID+GSQPKDL++A   P
Sbjct: 364 LQRRENSQIKCFAALEDELVTSGFDNKVWRVSIKDGQCGEAEAIDVGSQPKDLTLAAVSP 423

Query: 422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL 481
           EL LVS DSGVVLLRG+ +VSTINL F VTAS +APDGSEAIIG QDGKL +YSI GD+L
Sbjct: 424 ELALVSIDSGVVLLRGSSIVSTINLGFTVTASVLAPDGSEAIIGGQDGKLHIYSINGDSL 483

Query: 482 TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLA 541
           TEE  LEKHRGA+SVIRYSPD+SMFASGD+NREA+VWDR SREVKLKNMLYHTARINCLA
Sbjct: 484 TEEVTLEKHRGAISVIRYSPDLSMFASGDLNREAVVWDRASREVKLKNMLYHTARINCLA 543

Query: 542 WSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACV 601
           WSP+N+ VATGSLDTCVIIYEIDKPAS+R+T+KGAHLGGVYGLAFTD+ SVVSSGEDACV
Sbjct: 544 WSPDNTKVATGSLDTCVIIYEIDKPASNRLTVKGAHLGGVYGLAFTDDFSVVSSGEDACV 603

Query: 602 RVWRLTPN 609
           RVW+L P 
Sbjct: 604 RVWKLVPQ 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439121|ref|XP_004137336.1| PREDICTED: LOW QUALITY PROTEIN: 66 kDa stress protein-like [Cucumis sativus]

 Score = 1048 bits (2711), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 496/613 (80%), Positives = 558/613 (91%), Gaps = 5/613 (0%)

Query: 2   PQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPAT 61
           P+L+ETY CVPSTERGRGILISGHPK+NS+LYTNGRSV+IL+L NPL+VS+Y EH YPAT
Sbjct: 4   PELSETYACVPSTERGRGILISGHPKTNSVLYTNGRSVMILNLDNPLEVSVYAEHGYPAT 63

Query: 62  VARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDG 121
           VAR+SPNGEWIASADVSGTVRIWG H   VLKKEF+VLSGRIDDLQWSPDG+RIVACG+G
Sbjct: 64  VARYSPNGEWIASADVSGTVRIWGTHIGFVLKKEFKVLSGRIDDLQWSPDGMRIVACGEG 123

Query: 122 KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCG-----EDFLVNFYEGP 176
           KGKS VRAFMWDSGTNVGEFDGHSRRVLSCAFKP+RPFRIATCG     EDFLVNFYEGP
Sbjct: 124 KGKSFVRAFMWDSGTNVGEFDGHSRRVLSCAFKPTRPFRIATCGIATCGEDFLVNFYEGP 183

Query: 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSV 236
           PF+FKLS R HSNFVNC+RFSPDGSKFI+VSSDKKGIIYD KT DK+GELS +DGHKGS+
Sbjct: 184 PFRFKLSLRDHSNFVNCLRFSPDGSKFITVSSDKKGIIYDAKTGDKMGELSSDDGHKGSI 243

Query: 237 YAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL 296
           YAVSWS DGK+VLT SADK+AKVW+IS+D +GKL+KTLT  G+GGVDDMLVGCLWQN  +
Sbjct: 244 YAVSWSSDGKRVLTVSADKTAKVWEISDDGNGKLEKTLTSPGTGGVDDMLVGCLWQNQHI 303

Query: 297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGI 356
           V VSLGGTIS+FSA+DL+KSP+ LSGHMKNVT+L VL  DPKVILS+SYDG+I+KWIQGI
Sbjct: 304 VTVSLGGTISLFSASDLDKSPVILSGHMKNVTSLVVLKSDPKVILSTSYDGVIIKWIQGI 363

Query: 357 GYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSV 416
           GY GKLQR+ENSQIKCFAA+E+E+VTSGFDNK+WRVS++  QCG A +ID+GSQPKDL++
Sbjct: 364 GYSGKLQRRENSQIKCFAALEDELVTSGFDNKVWRVSIKDGQCGEAEAIDVGSQPKDLTL 423

Query: 417 ALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSI 476
           A   PEL LVS DSGVVLLRG+ +VSTINL F VTAS +APDGSEAIIG QDGKL +YSI
Sbjct: 424 AAVSPELALVSIDSGVVLLRGSSIVSTINLGFTVTASVLAPDGSEAIIGGQDGKLHIYSI 483

Query: 477 RGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR 536
            GD+LTEE  LEKHRGA+SVIRYSPD+SMFASGD+NREA+VWDR SREVKLKNMLYHTAR
Sbjct: 484 NGDSLTEEVTLEKHRGAISVIRYSPDLSMFASGDLNREAVVWDRASREVKLKNMLYHTAR 543

Query: 537 INCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSG 596
           INCLAWSP+N+ VATGSLDTCVIIYEIDKPAS+R+T+KGAHLGGVYGLAFTD+ SVVSSG
Sbjct: 544 INCLAWSPDNTKVATGSLDTCVIIYEIDKPASNRLTVKGAHLGGVYGLAFTDDFSVVSSG 603

Query: 597 EDACVRVWRLTPN 609
           EDACVRVW+L P 
Sbjct: 604 EDACVRVWKLVPQ 616

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527884|ref|XP_003532536.1| PREDICTED: 66 kDa stress protein-like [Glycine max]

 Score = 1044 bits (2700), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 494/606 (81%), Positives = 552/606 (91%)

Query: 3   QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATV 62
           +L ETY C+P+TERGRGILISG  KSNS++YTNGRSV++++L NPL VS+YG+HAYPATV
Sbjct: 4   ELLETYACMPTTERGRGILISGDAKSNSVVYTNGRSVVMMNLQNPLHVSVYGDHAYPATV 63

Query: 63  ARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK 122
           ARFSPNGEW+ASAD SGTVRIWG  ND VLKKEFRVLS RIDDLQWSPDGLRIVACG+GK
Sbjct: 64  ARFSPNGEWVASADASGTVRIWGTRNDFVLKKEFRVLSARIDDLQWSPDGLRIVACGEGK 123

Query: 123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182
           GKS VRAFMWDSGTNVGEFDGHSRRVLSCA+KP+RPFR+ TCGEDFLVNFYEGPPF+FKL
Sbjct: 124 GKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLVNFYEGPPFRFKL 183

Query: 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS 242
           SHR HSNFVNCVR+SPDGSKFISVSSDKKG+I+DGK+A+KIGELS E GH GS+YAVSWS
Sbjct: 184 SHRDHSNFVNCVRYSPDGSKFISVSSDKKGVIFDGKSAEKIGELSSEGGHTGSIYAVSWS 243

Query: 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG 302
           PDGKQVLT SADKSAKVWDI+E N+GK+KKTLT +GSGGV+DMLVGCLW ND+LV VSLG
Sbjct: 244 PDGKQVLTVSADKSAKVWDITEGNNGKVKKTLTCAGSGGVEDMLVGCLWLNDYLVTVSLG 303

Query: 303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL 362
           GTISIF A DL+K+P   SGHMKNV++LT+L  +P+V+LSSSYDGLIVKWIQGIGY GKL
Sbjct: 304 GTISIFLATDLDKAPTTFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYSGKL 363

Query: 363 QRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE 422
            RKENSQIKC AA+EEEIVTSGFDNKI RVSL  DQCG   +IDIGSQPKDLSVAL  PE
Sbjct: 364 HRKENSQIKCLAAVEEEIVTSGFDNKIRRVSLHRDQCGDTEAIDIGSQPKDLSVALLSPE 423

Query: 423 LVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLT 482
           L LVS DSGVV+LRG ++VSTINL F VTASA++PDGSEAIIG QDGKL +YS+ GDTL 
Sbjct: 424 LALVSIDSGVVMLRGTKIVSTINLGFIVTASAVSPDGSEAIIGGQDGKLHIYSVSGDTLV 483

Query: 483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW 542
           EE VLEKHRGA+SVIRYSPDVSMFASGDVNREA+VWDR SREVKLKNMLYHTARINCLAW
Sbjct: 484 EEVVLEKHRGAISVIRYSPDVSMFASGDVNREAVVWDRASREVKLKNMLYHTARINCLAW 543

Query: 543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVR 602
           SP++  +ATGSLDTCVIIYE+D+PASSR+TIKGAHLGGVYGLAFTDE+S+VSSGEDA +R
Sbjct: 544 SPDSHRIATGSLDTCVIIYEVDQPASSRITIKGAHLGGVYGLAFTDEYSLVSSGEDAFIR 603

Query: 603 VWRLTP 608
           VWR+TP
Sbjct: 604 VWRITP 609

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356511267|ref|XP_003524348.1| PREDICTED: 66 kDa stress protein-like [Glycine max]

 Score = 1041 bits (2693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/606 (81%), Positives = 554/606 (91%)

Query: 3   QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATV 62
           +L ETY C+P+TERGRGILISG  KSNSI+YTNGRSV++++L NPL VS+YG+HAYPATV
Sbjct: 4   ELLETYACMPTTERGRGILISGDAKSNSIVYTNGRSVVMMNLQNPLNVSVYGDHAYPATV 63

Query: 63  ARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK 122
           ARFSPNGEW+ASAD SG+VRIWG  ND VLKKEFRVLS RIDDLQWSPDGLRIVACG+GK
Sbjct: 64  ARFSPNGEWVASADASGSVRIWGTRNDFVLKKEFRVLSARIDDLQWSPDGLRIVACGEGK 123

Query: 123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182
           GKS VRAFMWDSGTNVGEFDGHSRRVLSCA+KP+RPFR+ TCGEDFL+NFYEGPPF+FKL
Sbjct: 124 GKSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRVVTCGEDFLLNFYEGPPFRFKL 183

Query: 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS 242
           SHR HSNFVNCVR+SPDGSKFISVSSDKKGII+DG +A+KIGELS E GH GS+YAVSWS
Sbjct: 184 SHRDHSNFVNCVRYSPDGSKFISVSSDKKGIIFDGNSAEKIGELSSEGGHTGSIYAVSWS 243

Query: 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG 302
           PDGK VLT SADKSAKVWDI+EDN+GK+KKTLT  G+GGV+DMLVGCLW ND+LV VSLG
Sbjct: 244 PDGKLVLTVSADKSAKVWDITEDNNGKVKKTLTCPGTGGVEDMLVGCLWLNDYLVTVSLG 303

Query: 303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL 362
           GTISIF A+DL+K+P   SGHMKNV++LT+L  +P+V+LSSSYDGLIVKWIQGIGY  KL
Sbjct: 304 GTISIFLASDLDKAPTAFSGHMKNVSSLTILRSNPRVLLSSSYDGLIVKWIQGIGYSEKL 363

Query: 363 QRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE 422
           QRKENSQIKC AA+EEEIVTSGFDNKI RVSL GDQCG A +IDIGSQPKDLSVAL  PE
Sbjct: 364 QRKENSQIKCLAAVEEEIVTSGFDNKIRRVSLHGDQCGDAEAIDIGSQPKDLSVALLSPE 423

Query: 423 LVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLT 482
           L LVS DSGVV+LRGA++VSTINL F VTASA++PDG+EAIIG QDGKL +YSI GDTL 
Sbjct: 424 LALVSIDSGVVMLRGAKIVSTINLGFIVTASAVSPDGNEAIIGGQDGKLHIYSISGDTLV 483

Query: 483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW 542
           EEAVLEKHRGA+SVIRYSPD+SMFASGDVNREAIVWDR SREVKLKNMLYHTARINCLAW
Sbjct: 484 EEAVLEKHRGAISVIRYSPDLSMFASGDVNREAIVWDRASREVKLKNMLYHTARINCLAW 543

Query: 543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVR 602
           SP++  +ATGSLDTCVIIYE+ +PASSR+TIKGAHLGGVYGLAFTDE+S+VSSGEDA +R
Sbjct: 544 SPDSLRIATGSLDTCVIIYEVYQPASSRITIKGAHLGGVYGLAFTDEYSLVSSGEDAFIR 603

Query: 603 VWRLTP 608
           VWR+TP
Sbjct: 604 VWRITP 609

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521569|ref|XP_003631073.1| 66 kDa stress protein [Medicago truncatula] gi|92870973|gb|ABE80134.1| WD40-like [Medicago truncatula] gi|355525095|gb|AET05549.1| 66 kDa stress protein [Medicago truncatula]

 Score = 1024 bits (2647), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/606 (80%), Positives = 541/606 (89%)

Query: 3   QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATV 62
           +L ETY C PSTERGRGILISG  KSN+I YTN RSVI+++L NPLQVS+YGEHAYPATV
Sbjct: 5   ELTETYACTPSTERGRGILISGDSKSNTITYTNARSVIMMNLHNPLQVSVYGEHAYPATV 64

Query: 63  ARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK 122
           ARFSPNGEW+ASADVSGTVRIWG  N+ VLKKEFRVLSGRIDDLQWSPDG+RIVA G+ K
Sbjct: 65  ARFSPNGEWVASADVSGTVRIWGTRNEFVLKKEFRVLSGRIDDLQWSPDGIRIVASGEAK 124

Query: 123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182
           G S VRAFMWDSGTNVGEFDGHSRRVLSCA+KP+RPFRI TCGEDFLVNFYEGPPF+FK 
Sbjct: 125 GNSFVRAFMWDSGTNVGEFDGHSRRVLSCAYKPTRPFRIVTCGEDFLVNFYEGPPFRFKQ 184

Query: 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS 242
           SHR HSNFVNCVR+SPDGSKF++VSSDKKGII+DGKT +KIGELS E GH GS+YAVSWS
Sbjct: 185 SHRDHSNFVNCVRYSPDGSKFVTVSSDKKGIIFDGKTGEKIGELSSEGGHTGSIYAVSWS 244

Query: 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG 302
           PDGKQVLT SADKSAKVWDISEDN GK+KKTL  S SGGV+DMLVGCLW ND+LV VSLG
Sbjct: 245 PDGKQVLTVSADKSAKVWDISEDNIGKVKKTLICSASGGVEDMLVGCLWLNDYLVTVSLG 304

Query: 303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL 362
           GTISIFSA+DL+K+P   SGHMKNV++LT+   +P+V+LS SYDGLIVKWIQGIGY GKL
Sbjct: 305 GTISIFSASDLDKAPRSFSGHMKNVSSLTIRRSNPRVLLSCSYDGLIVKWIQGIGYSGKL 364

Query: 363 QRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE 422
           QRKENSQIK  AA EEEIVTSGFDNKI RVSL GDQCG A +IDIGSQPKD SVAL  PE
Sbjct: 365 QRKENSQIKSLAAAEEEIVTSGFDNKIRRVSLHGDQCGDAEAIDIGSQPKDFSVALSSPE 424

Query: 423 LVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLT 482
           LVLVS DSGVV+LRG +VVSTINL F VTAS ++ DGSEAIIG Q+GKL +YSI GDTL 
Sbjct: 425 LVLVSIDSGVVMLRGTKVVSTINLGFTVTASVVSSDGSEAIIGGQNGKLHIYSISGDTLV 484

Query: 483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW 542
           EEAVLEKHRGA+SVIRYSPD SMFASGDVNREA+VWDR SR+VKLKNMLYHTARINCLAW
Sbjct: 485 EEAVLEKHRGAISVIRYSPDFSMFASGDVNREAVVWDRASRDVKLKNMLYHTARINCLAW 544

Query: 543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVR 602
           SP++S +ATGSLD CVIIYEID+P ++R TIKGAHLGGVYGL FTDE+S+VSSGEDA +R
Sbjct: 545 SPDSSRIATGSLDMCVIIYEIDQPVANRNTIKGAHLGGVYGLVFTDEYSLVSSGEDAFIR 604

Query: 603 VWRLTP 608
           VW++TP
Sbjct: 605 VWKITP 610

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22331145|ref|NP_188434.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|9294061|dbj|BAB02018.1| WD40-repeat protein [Arabidopsis thaliana] gi|17064720|gb|AAL32514.1| WD40-repeat protein [Arabidopsis thaliana] gi|21387079|gb|AAM47943.1| WD40-repeat protein [Arabidopsis thaliana] gi|332642520|gb|AEE76041.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana]

 Score =  997 bits (2577), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/608 (78%), Positives = 538/608 (88%), Gaps = 1/608 (0%)

Query: 3   QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATV 62
           +L+ETY CVPSTERGRGILISG+ KS++ILYTNGRSV+ LDL+NPL+VSIYGEHAYPATV
Sbjct: 2   ELSETYACVPSTERGRGILISGNSKSDTILYTNGRSVVTLDLNNPLKVSIYGEHAYPATV 61

Query: 63  ARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK 122
           AR+SPNGEWIAS DVSGTVRIWGA+NDHVLK EF+VL+GRIDDLQWS DG+RIVA GDGK
Sbjct: 62  ARYSPNGEWIASGDVSGTVRIWGAYNDHVLKNEFKVLAGRIDDLQWSADGMRIVASGDGK 121

Query: 123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182
           GKSLVRAFMWDSG+NVGEFDGHSRRVLSCA KP+RPFRI TCGEDFLVNFYEGPPFKFKL
Sbjct: 122 GKSLVRAFMWDSGSNVGEFDGHSRRVLSCAIKPTRPFRIVTCGEDFLVNFYEGPPFKFKL 181

Query: 183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS 242
           S R HSNFVNCVRF+PDGSKFI+VSSDKKGIIYDGKT + +GELS +DGHKGS+YAVSWS
Sbjct: 182 SSREHSNFVNCVRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSDDGHKGSIYAVSWS 241

Query: 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLT-PSGSGGVDDMLVGCLWQNDFLVIVSL 301
           PDGKQVLT SADKSAK+WDIS++  G L  TL  P  SGGVDDMLVGCLWQND +V VSL
Sbjct: 242 PDGKQVLTVSADKSAKIWDISDNGSGSLNTTLNCPGSSGGVDDMLVGCLWQNDHIVTVSL 301

Query: 302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK 361
           GGTISIFSA+DL+KSP Q SGHMKNV++L VL  +   ILS SYDGLI KW+ G G+ GK
Sbjct: 302 GGTISIFSASDLDKSPFQFSGHMKNVSSLAVLKGNADYILSGSYDGLICKWMLGRGFCGK 361

Query: 362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP 421
           LQR +NSQIKCFAA EEEIVTSG+DNKI R+S + DQC    SIDIG+QPKDLS+A   P
Sbjct: 362 LQRTQNSQIKCFAAHEEEIVTSGYDNKISRISYKDDQCTNEESIDIGNQPKDLSLAPLSP 421

Query: 422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL 481
           +L+LV+ +SGVV LR  +VVSTINL F VTA A+ PDG+EA+IG QDGKL +YSI GD+L
Sbjct: 422 DLLLVTFESGVVFLRDGKVVSTINLGFIVTALAVTPDGTEAVIGGQDGKLHLYSINGDSL 481

Query: 482 TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLA 541
           TEEAVLE+HRGA+SVIRYSPD+SMFAS D+NREA+VWDRVSRE+KLKNMLYH+ARINCLA
Sbjct: 482 TEEAVLERHRGAISVIRYSPDLSMFASADLNREAVVWDRVSREMKLKNMLYHSARINCLA 541

Query: 542 WSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACV 601
           WSPN++MVATGSLDTCVI+YE+DKPASSRMTIKGAHLGGVYGL F D+  VVSSGEDAC+
Sbjct: 542 WSPNSTMVATGSLDTCVIVYEVDKPASSRMTIKGAHLGGVYGLGFADDSHVVSSGEDACI 601

Query: 602 RVWRLTPN 609
           RVW  TP 
Sbjct: 602 RVWSFTPQ 609

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	609
TAIR|locus:2092742	609	AT3G18060 "AT3G18060" [Arabido	0.995	0.995	0.785	5.1e-264
DICTYBASE|DDB_G0278733	597	aip1 "actin-interacting protei	0.952	0.971	0.381	7.3e-114
FB|FBgn0260049	608	flr "flare" [Drosophila melano	0.958	0.960	0.367	9e-109
UNIPROTKB|O93277	609	WDR1 "WD repeat-containing pro	0.980	0.980	0.379	3.5e-107
UNIPROTKB|O75083	606	WDR1 "WD repeat-containing pro	0.975	0.980	0.385	7.2e-107
RGD|1305789	606	Wdr1 "WD repeat domain 1" [Rat	0.975	0.980	0.373	1.4e-105
MGI|MGI:1337100	606	Wdr1 "WD repeat domain 1" [Mus	0.975	0.980	0.373	2.8e-105
UNIPROTKB|Q2KJH4	606	WDR1 "WD repeat-containing pro	0.973	0.978	0.377	3.6e-105
UNIPROTKB|Q6DIF4	607	wdr1 "WD repeat-containing pro	0.975	0.978	0.372	3.2e-104
UNIPROTKB|Q9W7F2	607	wdr1-a "WD repeat-containing p	0.978	0.981	0.373	5.3e-104

TAIR|locus:2092742 AT3G18060 "AT3G18060" [Arabidopsis thaliana (taxid:3702)]

 Score = 2540 (899.2 bits), Expect = 5.1e-264, P = 5.1e-264
 Identities = 477/607 (78%), Positives = 538/607 (88%)

Query:     3 QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATV 62
             +L+ETY CVPSTERGRGILISG+ KS++ILYTNGRSV+ LDL+NPL+VSIYGEHAYPATV
Sbjct:     2 ELSETYACVPSTERGRGILISGNSKSDTILYTNGRSVVTLDLNNPLKVSIYGEHAYPATV 61

Query:    63 ARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK 122
             AR+SPNGEWIAS DVSGTVRIWGA+NDHVLK EF+VL+GRIDDLQWS DG+RIVA GDGK
Sbjct:    62 ARYSPNGEWIASGDVSGTVRIWGAYNDHVLKNEFKVLAGRIDDLQWSADGMRIVASGDGK 121

Query:   123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182
             GKSLVRAFMWDSG+NVGEFDGHSRRVLSCA KP+RPFRI TCGEDFLVNFYEGPPFKFKL
Sbjct:   122 GKSLVRAFMWDSGSNVGEFDGHSRRVLSCAIKPTRPFRIVTCGEDFLVNFYEGPPFKFKL 181

Query:   183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS 242
             S R HSNFVNCVRF+PDGSKFI+VSSDKKGIIYDGKT + +GELS +DGHKGS+YAVSWS
Sbjct:   182 SSREHSNFVNCVRFAPDGSKFITVSSDKKGIIYDGKTCEILGELSSDDGHKGSIYAVSWS 241

Query:   243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLT-PSGSGGVDDMLVGCLWQNDFLVIVSL 301
             PDGKQVLT SADKSAK+WDIS++  G L  TL  P  SGGVDDMLVGCLWQND +V VSL
Sbjct:   242 PDGKQVLTVSADKSAKIWDISDNGSGSLNTTLNCPGSSGGVDDMLVGCLWQNDHIVTVSL 301

Query:   302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK 361
             GGTISIFSA+DL+KSP Q SGHMKNV++L VL  +   ILS SYDGLI KW+ G G+ GK
Sbjct:   302 GGTISIFSASDLDKSPFQFSGHMKNVSSLAVLKGNADYILSGSYDGLICKWMLGRGFCGK 361

Query:   362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP 421
             LQR +NSQIKCFAA EEEIVTSG+DNKI R+S + DQC    SIDIG+QPKDLS+A   P
Sbjct:   362 LQRTQNSQIKCFAAHEEEIVTSGYDNKISRISYKDDQCTNEESIDIGNQPKDLSLAPLSP 421

Query:   422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL 481
             +L+LV+ +SGVV LR  +VVSTINL F VTA A+ PDG+EA+IG QDGKL +YSI GD+L
Sbjct:   422 DLLLVTFESGVVFLRDGKVVSTINLGFIVTALAVTPDGTEAVIGGQDGKLHLYSINGDSL 481

Query:   482 TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLA 541
             TEEAVLE+HRGA+SVIRYSPD+SMFAS D+NREA+VWDRVSRE+KLKNMLYH+ARINCLA
Sbjct:   482 TEEAVLERHRGAISVIRYSPDLSMFASADLNREAVVWDRVSREMKLKNMLYHSARINCLA 541

Query:   542 WSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACV 601
             WSPN++MVATGSLDTCVI+YE+DKPASSRMTIKGAHLGGVYGL F D+  VVSSGEDAC+
Sbjct:   542 WSPNSTMVATGSLDTCVIVYEVDKPASSRMTIKGAHLGGVYGLGFADDSHVVSSGEDACI 601

Query:   602 RVWRLTP 608
             RVW  TP
Sbjct:   602 RVWSFTP 608

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

DICTYBASE|DDB_G0278733 aip1 "actin-interacting protein 1" [Dictyostelium discoideum (taxid:44689)]

 Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
 Identities = 229/600 (38%), Positives = 360/600 (60%)

Query:    12 PSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
             P+T RG+ + I+G PK  +I+Y +G S+II ++ NP+   IY EH    TVA+++P+G +
Sbjct:    13 PATTRGKSVAINGDPKGENIVYASGSSIIIRNVKNPMVADIYYEHPCQTTVAKYAPSGNY 72

Query:    72 IASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF 130
             IAS DV G +RIW     +H+LK  ++VL+G I D+ W+ D  R+V  GDGK +    A 
Sbjct:    73 IASGDVQGNLRIWDTLQKEHILKATYKVLNGAILDIAWTSDNQRLVVVGDGKER-FGAAI 131

Query:   131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK--LSHRGHS 188
             +WDSG++ GE  GHS+ +LSC  K +RPFR AT  EDF VN++EGPPFKF+  ++    +
Sbjct:   132 LWDSGSSCGEITGHSKMILSCDIKSTRPFRAATGSEDFAVNWFEGPPFKFQKNIAAGDFT 191

Query:   189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV 248
              FVNCVRFSPDG+K ++V +DKK  +YDGKT +K+ EL+P   H G +Y  SWS D  +V
Sbjct:   192 RFVNCVRFSPDGNKLVTVGADKKAFVYDGKTGEKLIELNPAQQHTGGIYGCSWSADNNRV 251

Query:   249 LTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIF 308
             LTASADKS K+WD +    G+   + T  GS  V+D  +GCLW  D L+ V+L G IS  
Sbjct:   252 LTASADKSCKIWDTTT---GQCINSFT-FGSD-VNDQQLGCLWFGDSLLSVNLAGEISTL 306

Query:   309 SANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKEN- 367
             + +D+ K    + GH K V  +   + +   + S+SYD  +++W    G         + 
Sbjct:   307 NLDDVAKPSRVIKGHNKLVGTIA-FDKNAGSLYSASYDASLLQWDLSTGLATNFTGPAHK 365

Query:   368 SQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVS 427
             +QI       ++++T   D+ + ++S    +  Y  SI + S  +  +VA     +V VS
Sbjct:   366 NQITSIKINGDQLITCAMDDSV-KISSISKKT-YGESIGVDSPAQ--AVAFSGDVVVAVS 421

Query:   428 TDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL 487
               + + +++G ++VS     +  T+ AI  + +E  +G +D K+ V+++ G+ LT    L
Sbjct:   422 MKT-IYVIKGGKIVSQTAATWEPTSVAI--NDTEVSVGGKDNKIHVFTLSGNNLTASHTL 478

Query:   488 EKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS 547
             + HRGA++ + YSP     ASG  NRE IVW    +E K K  + HTARIN +AWS ++ 
Sbjct:   479 DNHRGAITDLSYSPCGKYLASGCSNREVIVWS--GKEAKSKGWVNHTARINAVAWSNDSK 536

Query:   548 MVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT 607
              VA+ SLD+ + I+ ++ P +S + +K +HLGGV  + +   + + S+G +  +++W ++
Sbjct:   537 FVASASLDSQIYIWNVENPTASPVQVKNSHLGGVNDVIYGSNNEIFSAGNEGAIKIWNVS 596

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0051015 "actin filament binding" evidence=IDA

GO:0043327 "chemotaxis to cAMP" evidence=IGI

GO:0030041 "actin filament polymerization" evidence=IGI

GO:0030010 "establishment of cell polarity" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0031252 "cell leading edge" evidence=IDA

GO:0060187 "cell pole" evidence=IDA

GO:0042641 "actomyosin" evidence=IDA

GO:0030864 "cortical actin cytoskeleton" evidence=IDA

GO:0030042 "actin filament depolymerization" evidence=IMP

GO:0008283 "cell proliferation" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0006907 "pinocytosis" evidence=IMP

GO:0001891 "phagocytic cup" evidence=IDA

FB|FBgn0260049 flr "flare" [Drosophila melanogaster (taxid:7227)]

 Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
 Identities = 223/606 (36%), Positives = 357/606 (58%)

Query:     8 YTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSP 67
             Y  +P T+RG+ I++   PK  + LYTNG SVII ++ NP    +Y EH+    VA++SP
Sbjct:    15 YATLPRTQRGQPIVLGADPKGKNFLYTNGNSVIIRNIENPAIADVYTEHSCAVNVAKYSP 74

Query:    68 NGEWIASADVSGTVRIWGAHN-DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL 126
             +G +IAS D SG +RIW   N +H+LK EF+ ++G I D+ WSPD  RIVA G+G+ +  
Sbjct:    75 SGFYIASGDASGKIRIWDTVNKEHLLKNEFQPIAGPIKDISWSPDNQRIVAVGEGRER-F 133

Query:   127 VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRG 186
                FM ++GT+VGE  G S+ + S  F+P+RPFRI T  ED  +  +EGPPFKFK++ + 
Sbjct:   134 GHVFMSETGTSVGEISGQSKSINSADFRPARPFRIVTGSEDNTIAVFEGPPFKFKMTKQD 193

Query:   187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL-SPEDGHKGSVYAVSWSPDG 245
             HS FV  VR+SPDG  F S   D K  +YDG +++ +GE  SP   HKG VYA++W PD 
Sbjct:   194 HSRFVQAVRYSPDGKFFASAGFDGKVFLYDGTSSELVGEFGSP--AHKGGVYALAWKPDS 251

Query:   246 KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI 305
              Q+LT S DK+ ++W +      +L        +  VDD  V CLWQ D L+ VSL G I
Sbjct:   252 TQLLTCSGDKTCRLWTVESR---ELVSEFVMGTT--VDDQQVSCLWQGDNLITVSLSGVI 306

Query:   306 SIFSANDLEKSPLQL-SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR 364
             +  +  D  K PL++  GH K +T L  L+ D   I + S+DG++  W  G G   ++  
Sbjct:   307 TYLNVADPSK-PLRVVKGHNKPITVLG-LSDDRSTIYTGSHDGVVTNWNSGSGTNDRITG 364

Query:   365 K-ENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSI-DIGSQPKDLSVALHYPE 422
                 +QI   AA  + + T G D+ + + S++G+   Y + +  +  QP+ L++ L    
Sbjct:   365 TGHGNQINGIAAWGDFVYTCGIDDSLRQFSVEGNS--YTDYVVKLNCQPRGLAI-LRNEN 421

Query:   423 LVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLT 482
             ++ ++    + L++  + + ++ +++  ++ A+  D S+  +G  D KL +Y+++G  L 
Sbjct:   422 IIALACIKELTLVQDQKKIFSLPIKYEASSIAVNADTSDVAVGGDDQKLHIYTLKGGVLE 481

Query:   483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD-RVSREVKLKNMLYHTARINCLA 541
              +  L+ H GAV+ + YSPD+    + D +R+ +++     +    K   +H+AR+N +A
Sbjct:   482 PKVELD-HLGAVTDVSYSPDLKYLVACDAHRKVVLYSVEEYKPAHNKEWGFHSARVNTVA 540

Query:   542 WSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDAC 600
             WSPN+ +VA+GSLDT +II+ +  PA   + IK AH    +  L + D ++V+S+G+D  
Sbjct:   541 WSPNSLLVASGSLDTTIIIWSVANPAKHTI-IKNAHPQSQITRLVWLDNNTVISTGQDCN 599

Query:   601 VRVWRL 606
              +VW +
Sbjct:   600 TKVWHV 605

GO:0030042 "actin filament depolymerization" evidence=ISS;IMP

GO:0003779 "actin binding" evidence=ISS

GO:0008154 "actin polymerization or depolymerization" evidence=ISS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0035317 "imaginal disc-derived wing hair organization" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

UNIPROTKB|O93277 WDR1 "WD repeat-containing protein 1" [Gallus gallus (taxid:9031)]

 Score = 1060 (378.2 bits), Expect = 3.5e-107, P = 3.5e-107
 Identities = 235/619 (37%), Positives = 358/619 (57%)

Query:     1 MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
             MP ++ + +  +P  ERG   +I G PK N+ LYTNG+ V+I ++ NP    IY EHA+ 
Sbjct:     3 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVVIRNIDNPAIADIYTEHAHQ 62

Query:    60 ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
               VA+++P+G +IAS DVSG +RIW     +H+LK E++  +G+I DL W+ D  RI   
Sbjct:    63 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDLAWTEDSKRIAVV 122

Query:   119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
             G+G+ K     F+WDSG++VGE  GH++ + S   K +RP+R+AT  +D    F+EGPPF
Sbjct:   123 GEGREK-FGAVFLWDSGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPF 181

Query:   179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
             KFK +   H+ FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct:   182 KFKFTLSDHTRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGGKAHDGGIYA 241

Query:   239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
             +SWSPD  Q+L+AS DK+AK+WD+  ++   +  T    GS  +D  L GCLWQ D L+ 
Sbjct:   242 ISWSPDSSQLLSASGDKTAKIWDVGANS---VVSTFN-MGSNVLDQQL-GCLWQKDHLLS 296

Query:   299 VSLGGTISIFSANDLEKSPLQ-LSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGI 356
             +SL G I+    N+ +K PL+ + GH K++  LTV  N     I S S DG I  W    
Sbjct:   297 LSLSGYINYLDKNNPDK-PLRVIKGHSKSIQCLTVHKNGGKSYIYSGSNDGHINYWDSDT 355

Query:   357 GYGGKLQRK-ENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDL 414
             G       K   +Q+   A  E +++VT   D+ +   +L        +++ +  QPK L
Sbjct:   356 GENDGFSGKGHTNQVSRMAVDEMDQLVTCSMDDTVRYTNLSKRDYSGQDAVKMDVQPKCL 415

Query:   415 SVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRV 473
             +V      +VL      +VL++  +    I+ L +   A A+ P G    +G  DG +R+
Sbjct:   416 AVGPGGYTVVLCIGQ--IVLMKDKKKCFAIDDLGYEPEAVAVHPGGGSVAVGGTDGNVRL 473

Query:   474 YSIRGDTL-TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY 532
             YSI+G +L +++  LE  +G V+ + YS D +  A  D N+   V+      V+  N+ Y
Sbjct:   474 YSIQGTSLKSDDKTLEA-KGPVTDLAYSHDGAFLAVCDANKVVTVFSVPDGYVE-HNVFY 531

Query:   533 -HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEH 590
              H A++ C+AWSP+N   A+G +D  V ++ +  P  +R+ I  AH L  V GLA+ DEH
Sbjct:   532 GHHAKVVCIAWSPDNEHFASGGMDMMVYVWTVSDP-ETRIKIPDAHRLHHVSGLAWLDEH 590

Query:   591 SVVSSGEDACVRVWRLTPN 609
             ++V++  DA V+ W ++ N
Sbjct:   591 TLVTTSHDASVKEWSISYN 609

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

UNIPROTKB|O75083 WDR1 "WD repeat-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 1057 (377.1 bits), Expect = 7.2e-107, P = 7.2e-107
 Identities = 238/618 (38%), Positives = 352/618 (56%)

Query:     1 MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
             MP ++ + +  +P  ERG   +I G PK N+ LYTNG+ VI+ ++ NP    IY EHA+ 
Sbjct:     1 MPYEIKKVFASLPQVERGVSKIIGGDPKGNNFLYTNGKCVILRNIDNPALADIYTEHAHQ 60

Query:    60 ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
               VA+++P+G +IAS DVSG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct:    61 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query:   119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
             G+G+ K     F+WDSG++VGE  GH++ + S   K SRP+R+AT  +D    F+EGPPF
Sbjct:   121 GEGREK-FGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLATGSDDNCAAFFEGPPF 179

Query:   179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
             KFK +   HS FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct:   180 KFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIYIYDGKTGEKVCALGGSKAHDGGIYA 239

Query:   239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
             +SWSPD   +L+AS DK++K+WD+S ++   +  T  P GS  +D  L GCLWQ D L+ 
Sbjct:   240 ISWSPDSTHLLSASGDKTSKIWDVSVNS---VVSTF-PMGSTVLDQQL-GCLWQKDHLLS 294

Query:   299 VSLGGTISIFSANDLEKSPLQ-LSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGI 356
             VSL G I+    N+  K PL  + GH K++  LTV  N     I S S+DG I  W    
Sbjct:   295 VSLSGYINYLDRNNPSK-PLHVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 353

Query:   357 GYGGKLQRK-ENSQIKCFAAIEE-EIVTSGFDNKIWRVSLQ-GDQCGYANSIDIGSQPKD 413
             G       K   +Q+      E  ++++   D+ +   SL   D  G    + +  QPK 
Sbjct:   354 GENDSFAGKGHTNQVSRMTVDESGQLISCSMDDTVRYTSLMLRDYSGQG-VVKLDVQPKC 412

Query:   414 LSVALH-YPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKL 471
             ++V    Y  +V +     +VLL+      +I N  +     A+ P G    IG  DG +
Sbjct:   413 VAVGPGGYAVVVCIGQ---IVLLKDQRKCFSIDNPGYEPEVVAVHPGGDTVAIGGVDGNV 469

Query:   472 RVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML 531
             R+YSI G TL +E  L + +G V+ + YS D +  A  D ++   V+  V+      N+ 
Sbjct:   470 RLYSILGTTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFS-VADGYSENNVF 528

Query:   532 Y-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDE 589
             Y H A+I CLAWSP+N   A+G +D  V ++ +  P  +R+ I+ AH L  V  LA+ DE
Sbjct:   529 YGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETRVKIQDAHRLHHVSSLAWLDE 587

Query:   590 HSVVSSGEDACVRVWRLT 607
             H++V++  DA V+ W +T
Sbjct:   588 HTLVTTSHDASVKEWTIT 605

GO:0003779 "actin binding" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=TAS

GO:0002576 "platelet degranulation" evidence=TAS

GO:0005576 "extracellular region" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0030168 "platelet activation" evidence=TAS

RGD|1305789 Wdr1 "WD repeat domain 1" [Rattus norvegicus (taxid:10116)]

 Score = 1045 (372.9 bits), Expect = 1.4e-105, P = 1.4e-105
 Identities = 231/618 (37%), Positives = 352/618 (56%)

Query:     1 MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
             MP ++ + +  +P  ERG   ++ G PK ++ LYTNG+ VI+ ++ NP    IY EHA+ 
Sbjct:     1 MPYEIKKVFASLPQVERGVSKILGGDPKGDNFLYTNGKCVILRNIDNPAVADIYTEHAHQ 60

Query:    60 ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
               VA+++P+G +IAS D+SG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct:    61 VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHILKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query:   119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
             G+G+ K     F+WD+G++VGE  GH++ + S   K +RP+R+AT  +D    F+EGPPF
Sbjct:   121 GEGREK-FGAVFLWDTGSSVGEITGHNKVINSVDIKQNRPYRLATGSDDNCAAFFEGPPF 179

Query:   179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
             KFK +   HS FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct:   180 KFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYA 239

Query:   239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
             +SWSPD   +L+AS DK++K+WD+   N   +  T  P GS  +D  L GCLWQ D L+ 
Sbjct:   240 ISWSPDSTHLLSASGDKTSKIWDV---NVNSVVSTF-PMGSNVLDQQL-GCLWQKDHLLS 294

Query:   299 VSLGGTISIFSANDLEKSPLQ-LSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGI 356
             +SL G I+    N+  K PL+ + GH K++  LTV  N     I S S+DG I  W    
Sbjct:   295 ISLSGYINYLDKNNPSK-PLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 353

Query:   357 GYGGKLQRK-ENSQIKCFAAIEE-EIVTSGFDNKIWRVSLQ-GDQCGYANSIDIGSQPKD 413
             G       K   +Q+      E  ++V+   D+ +   +L   D  G    + +  QPK 
Sbjct:   354 GENDSFSGKGHTNQVSRMTVDESGQLVSCSMDDTVRYTNLTLRDYSGQG-VVKLDVQPKC 412

Query:   414 LSVALH-YPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKL 471
             ++V    Y  +V +     +VLL+  +   +I N  +     A+ P G    +G  DG +
Sbjct:   413 VAVGPGGYTVVVCIGQ---IVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGSDGNV 469

Query:   472 RVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML 531
             RVYSI G TL +E  L + +G V+ + YS D +  A  D ++   V+  V+      N+ 
Sbjct:   470 RVYSILGATLKDEGKLLEAKGPVTDLAYSHDGAFLAVCDASKVVTVFS-VADGYSENNVF 528

Query:   532 Y-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDE 589
             Y H A+I CLAWSP+N   A+G +D  V ++ +  P  +++ I+ AH L  V  LA+ DE
Sbjct:   529 YGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETKVKIQDAHRLHHVSSLAWLDE 587

Query:   590 HSVVSSGEDACVRVWRLT 607
             H++V++  DA V+ W +T
Sbjct:   588 HTLVTTSHDASVKEWTIT 605

GO:0003779 "actin binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

MGI|MGI:1337100 Wdr1 "WD repeat domain 1" [Mus musculus (taxid:10090)]

 Score = 1042 (371.9 bits), Expect = 2.8e-105, P = 2.8e-105
 Identities = 231/618 (37%), Positives = 351/618 (56%)

Query:     1 MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
             MP ++ + +  +P  ERG   ++ G PK +  LYTNG+ VI+ ++ NP    IY EHA+ 
Sbjct:     1 MPYEIKKVFASLPQVERGVSKILGGDPKGDHFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60

Query:    60 ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
               VA+++P+G +IAS D+SG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct:    61 VVVAKYAPSGFYIASGDISGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query:   119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
             G+G+ K     F+WD+G++VGE  GH++ + S   K +RP+R+AT  +D    F+EGPPF
Sbjct:   121 GEGREK-FGAVFLWDTGSSVGEITGHNKVINSVDIKQTRPYRLATGSDDNCAAFFEGPPF 179

Query:   179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
             KFK +   HS FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct:   180 KFKFTIGDHSRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGESKAHDGGIYA 239

Query:   239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
             +SWSPD   +L+AS DK++K+WD+   N   +  T  P GS  +D  L GCLWQ D L+ 
Sbjct:   240 ISWSPDSTHLLSASGDKTSKIWDV---NVNSVVSTF-PMGSNVLDQQL-GCLWQKDHLLS 294

Query:   299 VSLGGTISIFSANDLEKSPLQ-LSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGI 356
             +SL G I+    N+  K PL+ + GH K++  LTV  N     I S S+DG I  W    
Sbjct:   295 ISLSGYINYLDKNNPSK-PLRVIKGHSKSIQCLTVHRNGGKSYIYSGSHDGHINYWDSET 353

Query:   357 GYGGKLQRK-ENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQ-GDQCGYANSIDIGSQPKD 413
             G       K   +Q+      E E++V+   D+ +   +L   D  G    + +  QPK 
Sbjct:   354 GENDSFSGKGHTNQVSRMTVNESEQLVSCSMDDTVRYTNLTLRDYSGQG-VVKLDVQPKC 412

Query:   414 LSVALH-YPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKL 471
             ++V    Y  +V +     +VLL+  +   +I N  +     A+ P G    +G  DG +
Sbjct:   413 VAVGPGGYTVVVCIGQ---IVLLKDQKKCFSIDNPGYEPEVVAVHPGGDTVAVGGTDGNV 469

Query:   472 RVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML 531
             RVYSI   TL +E  L + +G V+ + YS D +  A  D ++   V+  V+      N+ 
Sbjct:   470 RVYSILASTLKDEGKLLEAKGPVTDVAYSHDGAFLAVCDASKVVTVFS-VADGYSENNVF 528

Query:   532 Y-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDE 589
             Y H A+I CLAWSP+N   A+G +D  V ++ +  P  +++ I+ AH L  V  LA+ DE
Sbjct:   529 YGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETKVKIQDAHRLHHVSSLAWLDE 587

Query:   590 HSVVSSGEDACVRVWRLT 607
             H++V++  DA V+ W +T
Sbjct:   588 HTLVTTSHDASVKEWTIT 605

GO:0003779 "actin binding" evidence=ISA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=ISA

GO:0015629 "actin cytoskeleton" evidence=ISA

UNIPROTKB|Q2KJH4 WDR1 "WD repeat-containing protein 1" [Bos taurus (taxid:9913)]

 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 233/617 (37%), Positives = 348/617 (56%)

Query:     1 MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
             MP ++ + +  +P  ERG   ++ G PK NS LYTNG+ VI+ ++ NP    IY EHA+ 
Sbjct:     1 MPYEIKKVFASLPQVERGVSKIVGGDPKGNSFLYTNGKCVILRNIDNPAIADIYTEHAHQ 60

Query:    60 ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
               VA+++P+G +IAS DVSG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct:    61 VVVAKYAPSGFYIASGDVSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query:   119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
             G+G+ K     F+WDSG++VGE  GH++ + S   K SRP+R+ T  +D    F+EGPPF
Sbjct:   121 GEGREK-FGAVFLWDSGSSVGEITGHNKVINSVDIKQSRPYRLVTGSDDNCAAFFEGPPF 179

Query:   179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
             KFK +   H  FVNCVRFSPDG++F + S+D +  IYDGKT +K+  L     H G +YA
Sbjct:   180 KFKFTISDHGRFVNCVRFSPDGNRFATASADGQIFIYDGKTGEKVCALGGSKAHDGGIYA 239

Query:   239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
             +SWSPD   +L+AS DK++K+WD+   N   +  T T  GS  +D  L GCLWQ D L+ 
Sbjct:   240 ISWSPDSTHLLSASGDKTSKIWDV---NVNSVVNTFT-MGSNVLDQQL-GCLWQKDHLLS 294

Query:   299 VSLGGTISIFSANDLEKSPLQ-LSGHMKNVTALTV-LNIDPKVILSSSYDGLIVKWIQGI 356
             +SL G I+    N+  K PL+ + GH K++  LTV  N     I S S+DG I  W    
Sbjct:   295 ISLSGYINYLDKNNPSK-PLRVIKGHSKSIQCLTVHKNGGKSYIYSGSHDGHINYWDSET 353

Query:   357 GYGGKLQRK-ENSQIKCFAAIEE-EIVTSGFDNKIWRVSLQ-GDQCGYANSIDIGSQPKD 413
             G       K   +Q+      E  ++V+   D+ +   +L   D  G    + +  QPK 
Sbjct:   354 GENDSFAGKGHTNQVSRMTVDEHGQLVSCSMDDTVRYTNLTLRDYSGQG-VVKLDVQPKC 412

Query:   414 LSVALH-YPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKL 471
             L+V    Y  +V +     +VLL+      +I N  +     A+ P G    +G  DG +
Sbjct:   413 LAVGPGGYTVVVCIGQ---IVLLKDQRKCFSIDNPGYEPEVVAVHPGGETVAVGGADGNV 469

Query:   472 RVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML 531
             R+YSI G TL +E  L + +G V+ + +S D +  A  D ++   V+  V+      N+ 
Sbjct:   470 RLYSILGTTLKDEGKLLEAKGPVTDLAFSHDGAFLAVCDASKVVTVFS-VADGYSENNVF 528

Query:   532 Y-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDE 589
             Y H A+I CLAWSP+N   A+G +D  V ++ +  P  +R+ I+ AH L  V  LA+ DE
Sbjct:   529 YGHHAKIVCLAWSPDNEHFASGGMDMMVYVWTLSDP-ETRVKIQDAHRLHHVSSLAWLDE 587

Query:   590 HSVVSSGEDACVRVWRL 606
             H++V++  DA V+ W +
Sbjct:   588 HTLVTTSHDASVKEWTI 604

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

UNIPROTKB|Q6DIF4 wdr1 "WD repeat-containing protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 1032 (368.3 bits), Expect = 3.2e-104, P = 3.2e-104
 Identities = 230/618 (37%), Positives = 353/618 (57%)

Query:     1 MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
             MP +L + +  +P  ERG   +I+G PK N+ LYTNG+SVII ++ NP    IY EHA+P
Sbjct:     1 MPYELKKVFASLPQVERGVAKIITGDPKGNNFLYTNGKSVIIRNIENPAIADIYTEHAHP 60

Query:    60 ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
               VAR++P+G +IAS D SG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct:    61 VVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query:   119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
             G+G+ K     F+WD+G++VGE  G+ + + S   K +RP+R+ T  +D    F+EGPPF
Sbjct:   121 GEGREK-FGSVFLWDTGSSVGEISGNIKVINSVDIKQTRPYRLVTGSDDNCCAFFEGPPF 179

Query:   179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
             KFK +   HS FVNCVRFSPDGS+  S  +D +  +YDGKT +K+G L     H G +YA
Sbjct:   180 KFKFTMADHSRFVNCVRFSPDGSRLASAGADGQIFLYDGKTGEKVGNLGGSKAHDGGIYA 239

Query:   239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
             VSWS D  Q+L+AS DK+AK+WD++ ++      T    G+  +D  L GCLWQ D+L+ 
Sbjct:   240 VSWSADSTQLLSASGDKTAKIWDVAANS----AVTTFHLGTEVLDQQL-GCLWQKDYLLS 294

Query:   299 VSLGGTISIFSANDLEKSPLQ-LSGHMKNVTALTVLNIDPK-VILSSSYDGLIVKWIQGI 356
             VSL G I+    N+  + PL+ + GH K++  +TV N D +  I + S+DG I  W    
Sbjct:   295 VSLSGYINYLDKNNPSR-PLRVIKGHNKSIQCMTVHNSDGRSTIYTGSHDGHINYWDAET 353

Query:   357 G----YGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPK 412
             G    + GK    + S++   ++   +++T   D+ +   SL       + S+ +  QPK
Sbjct:   354 GENDTFTGKGHTNQVSRMDLDSS--NQLITCSMDDTVRYTSLTSKDYSSSESVKMDVQPK 411

Query:   413 DLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKL 471
                VA+     V+      +VLL+  + V  I+ L +   A AI        +G  DG +
Sbjct:   412 --CVAVGSGGYVVTLCIGQIVLLKDKKKVFAIDSLDYEPEAVAIHKGSGTVAVGGVDGNV 469

Query:   472 RVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML 531
              +YSI+G++L +E      +GAV+ + YS D +  A  D N+   V++ V+     +N+ 
Sbjct:   470 HLYSIQGNSLKDEGKSLPVKGAVTDLAYSHDGAFLAVTDANKVVTVFN-VADGYSEQNVY 528

Query:   532 Y-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDE 589
             Y H A+   +AWSP+N   A+  +D  V ++ +  P  +R+ I  AH L  V  LA+ DE
Sbjct:   529 YGHHAKAVSVAWSPDNEHFASSGMDMMVYVWTLSDP-DARIKIPDAHRLHHVSSLAWLDE 587

Query:   590 HSVVSSGEDACVRVWRLT 607
             H++ +   DACV+ W +T
Sbjct:   588 HTLATVSHDACVKQWTVT 605

GO:0003779 "actin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005884 "actin filament" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0030043 "actin filament fragmentation" evidence=ISS

UNIPROTKB|Q9W7F2 wdr1-a "WD repeat-containing protein 1-A" [Xenopus laevis (taxid:8355)]

 Score = 1030 (367.6 bits), Expect = 5.3e-104, P = 5.3e-104
 Identities = 230/616 (37%), Positives = 347/616 (56%)

Query:     1 MP-QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP 59
             MP +L + +  +P  ERG   +++G PK N+ LYTNG+SVII ++ NP    IY EHA+ 
Sbjct:     1 MPYELKKVFASLPQMERGVAKILAGDPKGNNFLYTNGKSVIIRNIDNPAIADIYTEHAHQ 60

Query:    60 ATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVAC 118
             A VAR++P+G +IAS D SG +RIW     +H+LK E++  +G+I D+ W+ D  RI   
Sbjct:    61 AVVARYAPSGFYIASGDTSGKLRIWDTTQKEHLLKYEYQPFAGKIKDIAWTEDSKRIAVV 120

Query:   119 GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF 178
             G+G+ K     F+WD+G++VGE  G+ + + S   K +RP+R+ T  +D    F EGPPF
Sbjct:   121 GEGREK-FASVFLWDTGSSVGEITGNIKVINSVDIKQTRPYRLVTGSDDNCCAFLEGPPF 179

Query:   179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA 238
             KFK +   HS FVNCVRFSPDGSK  S  +D +  +YDGKT +K+  L     H G +YA
Sbjct:   180 KFKFTMSDHSRFVNCVRFSPDGSKLASAGADGQIFLYDGKTGEKVCSLGGSKAHDGGIYA 239

Query:   239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
             VSWSPDG Q+L+AS DK+ K+WD++ ++      T    GS  +D  L GCLWQ D+L+ 
Sbjct:   240 VSWSPDGTQLLSASGDKTTKIWDVAANS----AVTTFNLGSDVLDQQL-GCLWQKDYLLS 294

Query:   299 VSLGGTISIFSANDLEKSPLQ-LSGHMKNVTALTVLNIDPK-VILSSSYDGLIVKWIQGI 356
             VSL G I+    N+  + PL+ + GH K++  +TV N D +  I + S+DG I  W    
Sbjct:   295 VSLSGYINYLDKNNPAR-PLRVIKGHNKSIQCMTVNNSDGRSTIYTGSHDGHINYWDAET 353

Query:   357 GYGGKLQRKENSQIKCFAAIE--EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDL 414
             G       K ++       ++   +++T   D+ +   SL       + S+ +  QPK  
Sbjct:   354 GENDTFTGKGHTNQVSSMDLDGCNQLITCSMDDTLRYTSLISKDYSSSESVKMDVQPK-- 411

Query:   415 SVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRV 473
              VA+     V+      +VLL+  + V  I+ L +   A AI        +G  DGK+ +
Sbjct:   412 CVAVGSGGYVVTVCIGQIVLLKDKKKVFAIDSLDYEPEAVAIHKGSGTVAVGGADGKVHL 471

Query:   474 YSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY- 532
             YSI+G++L +E      +GAV+ + YS D +  A  D N+   V+  V+     KN  Y 
Sbjct:   472 YSIQGNSLKDEGKTLPAKGAVTDLAYSHDGAFLAVTDANKVVTVFS-VADGYSEKNSYYG 530

Query:   533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHS 591
             H A+   +AWSP+N   A+  +D  V ++ +  P  +R+ +  AH L  V  LA+ DEH+
Sbjct:   531 HHAKALSVAWSPDNEHFASSGMDMMVYVWTLSDP-DTRIKMPDAHRLHHVSSLAWLDEHT 589

Query:   592 VVSSGEDACVRVWRLT 607
             + +   DACV+ W +T
Sbjct:   590 LATVSHDACVKQWTVT 605

GO:0003779 "actin binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005884 "actin filament" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0030043 "actin filament fragmentation" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75083	WDR1_HUMAN	No assigned EC number	0.3766	0.9786	0.9834	yes	no
Q6DIF4	WDR1_XENTR	No assigned EC number	0.3679	0.9770	0.9802	yes	no
Q9VU68	WDR1_DROME	No assigned EC number	0.3657	0.9573	0.9588	yes	no
O93277	WDR1_CHICK	No assigned EC number	0.3685	0.9852	0.9852	yes	no
P46680	AIP1_YEAST	No assigned EC number	0.3109	0.9359	0.9268	yes	no
O14301	YE85_SCHPO	No assigned EC number	0.3421	0.9655	0.9882	yes	no
Q2KJH4	WDR1_BOVIN	No assigned EC number	0.3707	0.9770	0.9818	yes	no
Q5RKI0	WDR1_RAT	No assigned EC number	0.3674	0.9802	0.9851	yes	no
O88342	WDR1_MOUSE	No assigned EC number	0.3691	0.9802	0.9851	yes	no
P54686	WD42_DICDI	No assigned EC number	0.3760	0.9540	0.9731	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pm.C_LG_XII0161	hypothetical protein (609 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	eugene3.00150723	hypothetical protein (401 aa)			•						0.444
	eugene3.00030383	hypothetical protein (239 aa)			•						0.435
	eugene3.00180717	hypothetical protein (345 aa)			•						0.434
	fgenesh4_pg.C_LG_XVII000484	hypothetical protein (433 aa)			•						0.424
	eugene3.00140830	hypothetical protein (166 aa)			•						0.410
	grail3.0037006501	hypothetical protein (389 aa)			•						0.405

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	609
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-45
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-34
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-30
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-28
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	9e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-24
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-23
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-17
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-15
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-10
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-08
smart00320	40	smart00320, WD40, WD40 repeats	1e-07
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	4e-05
pfam04762	903	pfam04762, IKI3, IKI3 family	6e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	6e-04
smart00320	40	smart00320, WD40, WD40 repeats	0.002

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  161 bits (409), Expect = 4e-45
 Identities = 88/297 (29%), Positives = 146/297 (49%), Gaps = 22/297 (7%)

Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI 115
           H    T   FSP+G+ +A+    GT+++W      +L+   +  +G + D+  S DG  +
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT-LKGHTGPVRDVAASADGTYL 66

Query: 116 VACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175
            +    K    +R +  ++G  V    GH+  V S AF P     +++   D  +  ++ 
Sbjct: 67  ASGSSDK---TIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI-LSSSSRDKTIKVWDV 122

Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKTADKIGELSPEDGHKG 234
              K   + RGH+++VN V FSPDG  F++ SS D    ++D +T   +  L+   GH G
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGTIKLWDLRTGKCVATLT---GHTG 178

Query: 235 SVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW--Q 292
            V +V++SPDG+++L++S+D + K+WD+S    GK   TL      G ++ +    +   
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLST---GKCLGTLR-----GHENGVNSVAFSPD 230

Query: 293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLI 349
              L   S  GTI ++     E     LSGH  +VT+L     D K + S S DG I
Sbjct: 231 GYLLASGSEDGTIRVWDLRTGECV-QTLSGHTNSVTSLAWSP-DGKRLASGSADGTI 285

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  132 bits (333), Expect = 2e-34
 Identities = 66/228 (28%), Positives = 108/228 (47%), Gaps = 14/228 (6%)

Query: 37  RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF 96
           +++ + DL     V     H    +   FSP+G  ++S+    T+++W            
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG-KCLTTL 131

Query: 97  RVLSGRIDDLQWSPDGLRIV-ACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVLSCAF 153
           R  +  ++ + +SPDG  +  +  DG  K      +WD  T   V    GH+  V S AF
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIK------LWDLRTGKCVATLTGHTGEVNSVAF 185

Query: 154 KPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI 213
            P    ++ +   D  +  ++    K   + RGH N VN V FSPDG    S S D    
Sbjct: 186 SPDG-EKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIR 244

Query: 214 IYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
           ++D +T + +  LS   GH  SV +++WSPDGK++ + SAD + ++WD
Sbjct: 245 VWDLRTGECVQTLS---GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  120 bits (302), Expect = 3e-30
 Identities = 89/340 (26%), Positives = 138/340 (40%), Gaps = 63/340 (18%)

Query: 230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC 289
            GH G V  V++SPDGK + T S D + KVWD+     G+L +TL    +G V D  V  
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDL---ETGELLRTLK-GHTGPVRD--VAA 59

Query: 290 LWQNDFLVIVSLGGTISIFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDG 347
                +L   S   TI ++   DLE       L+GH   V+++     D +++ SSS D 
Sbjct: 60  SADGTYLASGSSDKTIRLW---DLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDK 115

Query: 348 LIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDI 407
            I  W             +    KC           G  + +  V+   D          
Sbjct: 116 TIKVW-------------DVETGKC------LTTLRGHTDWVNSVAFSPDG--------- 147

Query: 408 GSQPKDLSVALHYPELVLVSTDSGVVLL---RGAEVVSTINL-RFPVTASAIAPDGSEAI 463
                           V  S+  G + L   R  + V+T+      V + A +PDG + +
Sbjct: 148 --------------TFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLL 193

Query: 464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR 523
             S DG ++++ +          L  H   V+ + +SPD  + ASG  +    VWD  + 
Sbjct: 194 SSSSDGTIKLWDLSTGKCL--GTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG 251

Query: 524 EVKLKNMLY-HTARINCLAWSPNNSMVATGSLDTCVIIYE 562
           E      L  HT  +  LAWSP+   +A+GS D  + I++
Sbjct: 252 E--CVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  119 bits (299), Expect = 8e-29
 Identities = 101/398 (25%), Positives = 168/398 (42%), Gaps = 21/398 (5%)

Query: 19  GILISGHPKSNSILYTNG--RSVIILDLSNPLQV--SIYGEHAYP-ATVARFSPNGEWIA 73
            I          +L +     ++ + DL N  ++  S+ G H    + +A  SP+G  I 
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 74  SA--DVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM 131
            A   + GTV++W       L +     S  +  L +SPDG  + +     G   ++ + 
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGT--IKLWD 184

Query: 132 WDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH-RGHSNF 190
             +G  +    GH+  V S AF P     IA+   D  +  ++    K   S   GHS+ 
Sbjct: 185 LRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS 244

Query: 191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT 250
           V    FSPDGS   S SSD    ++D +++     L    GH  SV +V++SPDGK + +
Sbjct: 245 VVSS-FSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLAS 301

Query: 251 ASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSA 310
            S+D + ++WD+     GKL  +LT  G  G    L      +  +   S  GTI ++  
Sbjct: 302 GSSDGTVRLWDLE---TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL 358

Query: 311 NDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI 370
                 PL+      NV +++  + D +V+ S S DG +  W    G   +      S++
Sbjct: 359 R--TGKPLKTLEGHSNVLSVS-FSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRV 415

Query: 371 KC--FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSID 406
               F+   + + +   DN I    L+      + S D
Sbjct: 416 TSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPD 453

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  115 bits (289), Expect = 1e-28
 Identities = 87/342 (25%), Positives = 137/342 (40%), Gaps = 63/342 (18%)

Query: 184 HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
            +GH+  V CV FSPDG    + S D    ++D +T + +  L    GH G V  V+ S 
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLK---GHTGPVRDVAASA 61

Query: 244 DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG- 302
           DG  + + S+DK+ ++WD+     G+  +TLT     G    +    +  D  ++ S   
Sbjct: 62  DGTYLASGSSDKTIRLWDLET---GECVRTLT-----GHTSYVSSVAFSPDGRILSSSSR 113

Query: 303 -GTISIFSANDLEKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG 359
             TI ++   D+E       L GH   V ++   + D   + SSS DG I  W    G  
Sbjct: 114 DKTIKVW---DVETGKCLTTLRGHTDWVNSVAF-SPDGTFVASSSQDGTIKLWDLRTGKC 169

Query: 360 GKLQRKENSQIK--CFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVA 417
                    ++    F+   E++++S  D  I    L   +C                  
Sbjct: 170 VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC------------------ 211

Query: 418 LHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR 477
                         +  LRG E          V + A +PDG     GS+DG +RV+ +R
Sbjct: 212 --------------LGTLRGHEN--------GVNSVAFSPDGYLLASGSEDGTIRVWDLR 249

Query: 478 GDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
             T      L  H  +V+ + +SPD    ASG  +    +WD
Sbjct: 250 --TGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  110 bits (275), Expect = 9e-26
 Identities = 112/437 (25%), Positives = 174/437 (39%), Gaps = 56/437 (12%)

Query: 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSV 236
           P    L  RGH + +  + FSPDG   +S SSD    ++D    +K+ + S E  H  SV
Sbjct: 54  PDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK-SLEGLHDSSV 112

Query: 237 YAVSW-SPDGKQVLTA--SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293
             ++  SPDG  +L A  S D + K+WD+S    GKL +TL    S  V  +      + 
Sbjct: 113 SKLALSSPDGNSILLASSSLDGTVKLWDLS--TPGKLIRTLEGH-SESVTSLAFSPDGKL 169

Query: 294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI 353
                 SL GTI ++      K    L+GH   V++L        +I S S DG I  W 
Sbjct: 170 -LASGSSLDGTIKLWDLRT-GKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 354 QGIGY--GGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP 411
              G      L    +S +  F+     + +   D  I    L+                
Sbjct: 228 LSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSS------------ 275

Query: 412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKL 471
                                       + +       V + A +PDG     GS DG +
Sbjct: 276 ---------------------------LLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 472 RVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAI-VWDRVSREVKLKNM 530
           R++ +    L     L+ H G VS + +SPD S+  SG  +   I +WD   R  K    
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL--RTGKPLKT 366

Query: 531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DE 589
           L   + +  +++SP+  +V++GS D  V ++++     S +     H   V  L F+ D 
Sbjct: 367 LEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDL--STGSLLRNLDGHTSRVTSLDFSPDG 424

Query: 590 HSVVSSGEDACVRVWRL 606
            S+ S   D  +R+W L
Sbjct: 425 KSLASGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  106 bits (264), Expect = 2e-24
 Identities = 104/475 (21%), Positives = 177/475 (37%), Gaps = 69/475 (14%)

Query: 20  ILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSG 79
           +L  G  +S  +L       ++      L   +   H    T   FSP+GE + S    G
Sbjct: 30  LLSLGSSESGILLLALLSDSLVS--LPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDG 87

Query: 80  TVRIWGAHNDHVLKKEFRVLSGR-IDDLQW-SPDGLRIVACGDGKGKSLVRAFMWDSGTN 137
           T+++W   N   L K    L    +  L   SPDG  I+        ++    +WD  T 
Sbjct: 88  TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV---KLWDLSTP 144

Query: 138 ---VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV 194
              +   +GHS  V S AF P      +    D  +  ++    K   +  GH++ V+ +
Sbjct: 145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSL 204

Query: 195 RFSPDGSKFI-SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
            FSPDG   I S SSD    ++D  T   +   S   GH  SV + S+SPDG  + + S+
Sbjct: 205 AFSPDGGLLIASGSSDGTIRLWDLSTGKLL--RSTLSGHSDSVVS-SFSPDGSLLASGSS 261

Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG--GTISIFSAN 311
           D + ++WD+   +   L +TL+          ++   +  D  ++ S    GT+ ++   
Sbjct: 262 DGTIRLWDL--RSSSSLLRTLSGH-----SSSVLSVAFSPDGKLLASGSSDGTVRLWDLE 314

Query: 312 DLEK-SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI 370
             +  S L L GH   V++L+       ++   S DG I  W                  
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLW------------------ 356

Query: 371 KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDS 430
                                            +++  S    +S +     +   STD 
Sbjct: 357 ------------------------DLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDG 392

Query: 431 GVVL---LRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLT 482
            V L     G+ + +       VT+   +PDG     GS D  +R++ ++    +
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKS 447

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  102 bits (255), Expect = 5e-24
 Identities = 86/347 (24%), Positives = 136/347 (39%), Gaps = 66/347 (19%)

Query: 137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGED---FLVNFYEGPPFKFKLSHRGHSNFVNC 193
                 GH+  V   AF P     +AT   D    + +   G   +   + +GH+  V  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETG---ELLRTLKGHTGPVRD 56

Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
           V  S DG+   S SSDK   ++D +T + +  L+   GH   V +V++SPDG+ + ++S 
Sbjct: 57  VAASADGTYLASGSSDKTIRLWDLETGECVRTLT---GHTSYVSSVAFSPDGRILSSSSR 113

Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVSLGGTISIFSAN 311
           DK+ KVWD+     GK   TL      G  D +    +     F+   S  GTI ++   
Sbjct: 114 DKTIKVWDVET---GKCLTTLR-----GHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR 165

Query: 312 DLEKSPLQ-LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI 370
                 +  L+GH   V ++     D + +LSSS DG I  W             + S  
Sbjct: 166 TG--KCVATLTGHTGEVNSVAFSP-DGEKLLSSSSDGTIKLW-------------DLSTG 209

Query: 371 KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDS 430
           KC                    +L+G +    NS+        L+       + +    +
Sbjct: 210 KCLG------------------TLRGHE-NGVNSVAFSPDGYLLASGSEDGTIRVWDLRT 250

Query: 431 GVVL--LRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYS 475
           G  +  L G            VT+ A +PDG     GS DG +R++ 
Sbjct: 251 GECVQTLSGHTN--------SVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  101 bits (253), Expect = 1e-23
 Identities = 73/302 (24%), Positives = 127/302 (42%), Gaps = 31/302 (10%)

Query: 319 QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKEN--SQIKCFAAI 376
            L GH   VT +     D K++ + S DG I  W   +  G  L+  +     ++  AA 
Sbjct: 4   TLKGHTGGVTCVAFSP-DGKLLATGSGDGTIKVW--DLETGELLRTLKGHTGPVRDVAAS 60

Query: 377 --EEEIVTSGFDNKIWRVSLQGDQC-----GYANSIDIGSQPKDLSVALHYPELVLVST- 428
                + +   D  I    L+  +C     G+ + +         SVA      +L S+ 
Sbjct: 61  ADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYV--------SSVAFSPDGRILSSSS 112

Query: 429 -DSGVVLLRGAEVVSTINLRF---PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEE 484
            D  + +           LR     V + A +PDG+     SQDG ++++ +R  T    
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR--TGKCV 170

Query: 485 AVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP 544
           A L  H G V+ + +SPD     S   +    +WD +S    L  +  H   +N +A+SP
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWD-LSTGKCLGTLRGHENGVNSVAFSP 229

Query: 545 NNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRV 603
           +  ++A+GS D  + ++++      + T+ G H   V  LA++ D   + S   D  +R+
Sbjct: 230 DGYLLASGSEDGTIRVWDLRTGECVQ-TLSG-HTNSVTSLAWSPDGKRLASGSADGTIRI 287

Query: 604 WR 605
           W 
Sbjct: 288 WD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 93.6 bits (233), Expect = 5e-21
 Identities = 45/159 (28%), Positives = 77/159 (48%), Gaps = 6/159 (3%)

Query: 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS 508
           PV   A + DG+    GS D  +R++ +          L  H   VS + +SPD  + +S
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSS 110

Query: 509 GDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPAS 568
              ++   VWD V     L  +  HT  +N +A+SP+ + VA+ S D  + ++++     
Sbjct: 111 SSRDKTIKVWD-VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRT-GK 168

Query: 569 SRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606
              T+ G H G V  +AF+ D   ++SS  D  +++W L
Sbjct: 169 CVATLTG-HTGEVNSVAFSPDGEKLLSSSSDGTIKLWDL 206

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 80.8 bits (200), Expect = 9e-17
 Identities = 33/123 (26%), Positives = 61/123 (49%), Gaps = 4/123 (3%)

Query: 483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW 542
               L+ H G V+ + +SPD  + A+G  +    VWD  + E+       HT  +  +A 
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG-HTGPVRDVAA 59

Query: 543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHS-VVSSGEDACV 601
           S + + +A+GS D  + +++++     R T+ G H   V  +AF+ +   + SS  D  +
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVR-TLTG-HTSYVSSVAFSPDGRILSSSSRDKTI 117

Query: 602 RVW 604
           +VW
Sbjct: 118 KVW 120

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 79.7 bits (195), Expect = 1e-15
 Identities = 73/310 (23%), Positives = 130/310 (41%), Gaps = 17/310 (5%)

Query: 311 NDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW--IQGIGYGGKLQRKENS 368
           +  + S L L GH  ++T++   + D +++LS S DG I  W    G      L+   +S
Sbjct: 52  SLPDLSSLLLRGHEDSITSI-AFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDS 110

Query: 369 QIKCFAAI-----EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL 423
            +   A          + +S  D  +    L                   L+ +     L
Sbjct: 111 SVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLL 170

Query: 424 VLVSTDSGVV----LLRGAEVVSTINLRFPVTASAIAPDGSEAIIG-SQDGKLRVYSIRG 478
              S+  G +    L  G  + +      PV++ A +PDG   I   S DG +R++ +  
Sbjct: 171 ASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLS- 229

Query: 479 DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN 538
                 + L  H  +V V  +SPD S+ ASG  +    +WD  S    L+ +  H++ + 
Sbjct: 230 TGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVL 288

Query: 539 CLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHS--VVSSG 596
            +A+SP+  ++A+GS D  V +++++            H G V  L+F+ + S  V    
Sbjct: 289 SVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS 348

Query: 597 EDACVRVWRL 606
           +D  +R+W L
Sbjct: 349 DDGTIRLWDL 358

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 62.4 bits (150), Expect = 3e-10
 Identities = 41/192 (21%), Positives = 81/192 (42%), Gaps = 6/192 (3%)

Query: 421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT 480
             L+L      +V L     +        +T+ A +PDG   + GS DG ++++ +    
Sbjct: 39  GILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE 98

Query: 481 LTEEAVLEKHRGAV-SVIRYSPDVSMFAS--GDVNREAIVWDRVSREVKLKNMLYHTARI 537
              +++   H  +V  +   SPD +        ++    +WD  +    ++ +  H+  +
Sbjct: 99  KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESV 158

Query: 538 NCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHS--VVSS 595
             LA+SP+  ++A+GS     I     +      T+ G H   V  LAF+ +    + S 
Sbjct: 159 TSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-HTDPVSSLAFSPDGGLLIASG 217

Query: 596 GEDACVRVWRLT 607
             D  +R+W L+
Sbjct: 218 SSDGTIRLWDLS 229

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 1/74 (1%)

Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSV 592
           HT  + C+A+SP+  ++ATGS D  + +++++     R T+KG         A  D   +
Sbjct: 8   HTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR-TLKGHTGPVRDVAASADGTYL 66

Query: 593 VSSGEDACVRVWRL 606
            S   D  +R+W L
Sbjct: 67  ASGSSDKTIRLWDL 80

Length = 289

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
            GH G V +V++SPDG  + + S D + +VWD
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 47.7 bits (114), Expect = 1e-07
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
            GH G V +V++SPDGK + + S D + K+WD
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 14/39 (35%), Positives = 20/39 (51%)

Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216
            K   + +GH+  V  V FSPDG+   S S D    ++D
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216
             +   + +GH+  V  V FSPDG    S S D    ++D
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 10/29 (34%), Positives = 20/29 (68%)

Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIY 561
           HT  +  +A+SP+ +++A+GS D  V ++
Sbjct: 10  HTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 9/30 (30%), Positives = 19/30 (63%)

Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIYE 562
           HT  +  +A+SP+   +A+GS D  + +++
Sbjct: 11  HTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|218251 pfam04762, IKI3, IKI3 family

 Score = 42.7 bits (101), Expect = 6e-04
 Identities = 59/267 (22%), Positives = 93/267 (34%), Gaps = 63/267 (23%)

Query: 80  TVRIWGAHNDH-VLKKEFRV-LSGRIDDLQWSP-DGLRIVACGDGKGKSLVRAFMW---- 132
            V++W   N H  LK+E R   S  +   +W P   L +       G+ L+  F W    
Sbjct: 311 RVQLWTTGNYHWYLKQELRFPESAGVAFFKWDPEKPLTL-HVLTESGQILIVDFAWTVAR 369

Query: 133 -------DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP----FKFK 181
                  D+GT V   DG +  +         P R+A       V     PP     + +
Sbjct: 370 SPTLSPNDNGT-VAVIDGSTLLL--------TPLRLA------NV-----PPPMSARELE 409

Query: 182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV-- 239
           L        +N V FS   S    ++SD    IY+     +     P+   K S+  V  
Sbjct: 410 LPSN-----INDVAFSKSNSCVAVLTSDGDISIYELSLKKRKPGSPPKLTSKFSLDKVEN 464

Query: 240 --SWSPDG--KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF 295
             S    G  +Q+   +  +   + D   DN  ++   L       VDD           
Sbjct: 465 SDSEVALGSLRQLAFLNDSELLVLSD--SDNITEI--VLVD-----VDDTENPLSV---- 511

Query: 296 LVIVSLGGTISIFSANDLEKSPLQLSG 322
            VI  + G + I S+ND +   ++   
Sbjct: 512 SVITEIEGIVLILSSNDYKHVYIETRD 538

Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation. This region contains WD40 like repeats. Length = 903

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 31/130 (23%), Positives = 56/130 (43%), Gaps = 6/130 (4%)

Query: 137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRF 196
            +    GH+++V   +F PS    +A+ G D +VN ++    K     + HS+ +  + +
Sbjct: 117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEW 176

Query: 197 SPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKS 256
           + DGS   + S DKK  I D +    +  +      K S   + W+     ++T    KS
Sbjct: 177 NLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAK-SQRCL-WAKRKDLIITLGCSKS 234

Query: 257 ----AKVWDI 262
                 +WD 
Sbjct: 235 QQRQIMLWDT 244

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW 84
           +     H  P T   FSP+G+++AS    GT+++W
Sbjct: 4  LLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	609
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0278	334	consensus Serine/threonine kinase receptor-associa	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG2048	691	consensus WD40 repeat protein [General function pr	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG2048	691	consensus WD40 repeat protein [General function pr	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.96
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.96
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0289	506	consensus mRNA splicing factor [General function p	99.96
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0643	327	consensus Translation initiation factor 3, subunit	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0641	350	consensus WD40 repeat protein [General function pr	99.95
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.93
KOG0289	506	consensus mRNA splicing factor [General function p	99.93
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.93
PTZ00421	493	coronin; Provisional	99.93
PTZ00420	568	coronin; Provisional	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.93
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG0646	476	consensus WD40 repeat protein [General function pr	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG1963	792	consensus WD40 repeat protein [General function pr	99.89
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.89
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.89
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.87
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.86
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.86
KOG0267	825	consensus Microtubule severing protein katanin p80	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG0646	476	consensus WD40 repeat protein [General function pr	99.85
COG2319	466	FOG: WD40 repeat [General function prediction only	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG1274	933	consensus WD40 repeat protein [General function pr	99.85
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG1273	405	consensus WD40 repeat protein [General function pr	99.83
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.83
KOG2055	514	consensus WD40 repeat protein [General function pr	99.83
KOG0639	705	consensus Transducin-like enhancer of split protei	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.82
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.81
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.81
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.81
KOG1273	405	consensus WD40 repeat protein [General function pr	99.81
KOG0267	825	consensus Microtubule severing protein katanin p80	99.81
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.8
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.79
KOG1963	792	consensus WD40 repeat protein [General function pr	99.78
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.78
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.77
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.75
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.75
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.75
KOG0649	325	consensus WD40 repeat protein [General function pr	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.75
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.73
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.73
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.73
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.73
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.72
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
KOG1188	376	consensus WD40 repeat protein [General function pr	99.72
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.7
KOG4227	609	consensus WD40 repeat protein [General function pr	99.7
PRK01742	429	tolB translocation protein TolB; Provisional	99.7
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.69
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.69
PRK11028	330	6-phosphogluconolactonase; Provisional	99.69
PRK11028	330	6-phosphogluconolactonase; Provisional	99.66
KOG1188	376	consensus WD40 repeat protein [General function pr	99.65
PRK01742	429	tolB translocation protein TolB; Provisional	99.65
KOG4227	609	consensus WD40 repeat protein [General function pr	99.64
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.63
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.62
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.61
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.59
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.59
KOG1334	559	consensus WD40 repeat protein [General function pr	99.58
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.57
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.57
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.57
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.56
KOG1310	758	consensus WD40 repeat protein [General function pr	99.56
KOG1334	559	consensus WD40 repeat protein [General function pr	99.56
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.55
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.55
KOG1310	758	consensus WD40 repeat protein [General function pr	99.54
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
PRK03629	429	tolB translocation protein TolB; Provisional	99.54
KOG0649	325	consensus WD40 repeat protein [General function pr	99.54
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.53
PRK04922	433	tolB translocation protein TolB; Provisional	99.53
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.53
PRK02889	427	tolB translocation protein TolB; Provisional	99.53
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.52
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.52
PRK03629	429	tolB translocation protein TolB; Provisional	99.52
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.51
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.51
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
PRK01029	428	tolB translocation protein TolB; Provisional	99.46
PRK05137	435	tolB translocation protein TolB; Provisional	99.46
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.44
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.44
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.44
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.43
PRK04922	433	tolB translocation protein TolB; Provisional	99.43
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.4
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.36
KOG2315	566	consensus Predicted translation initiation factor	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.33
PRK00178	430	tolB translocation protein TolB; Provisional	99.33
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.32
PRK04792	448	tolB translocation protein TolB; Provisional	99.31
KOG2321	703	consensus WD40 repeat protein [General function pr	99.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.29
PRK00178	430	tolB translocation protein TolB; Provisional	99.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.29
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.29
KOG2139	445	consensus WD40 repeat protein [General function pr	99.28
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.27
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.27
KOG2321	703	consensus WD40 repeat protein [General function pr	99.26
KOG2139	445	consensus WD40 repeat protein [General function pr	99.25
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.23
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.22
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	99.21
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.2
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.2
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.18
COG4946	668	Uncharacterized protein related to the periplasmic	99.18
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.17
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.11
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.1
KOG4547	541	consensus WD40 repeat-containing protein [General	99.08
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
KOG2314	698	consensus Translation initiation factor 3, subunit	99.04
KOG2315	566	consensus Predicted translation initiation factor	99.04
PRK04043	419	tolB translocation protein TolB; Provisional	99.01
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.01
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.99
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.99
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.98
KOG4547	541	consensus WD40 repeat-containing protein [General	98.93
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.9
COG4946	668	Uncharacterized protein related to the periplasmic	98.88
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.86
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.86
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.85
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.84
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.83
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.82
KOG2314	698	consensus Translation initiation factor 3, subunit	98.81
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.8
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.79
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.78
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.77
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.76
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.74
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.65
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.64
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.64
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.62
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.61
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.61
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.53
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.51
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.5
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.48
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.45
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.44
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.42
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.41
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.38
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.29
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.28
KOG2695	425	consensus WD40 repeat protein [General function pr	98.25
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.23
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.21
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.15
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.06
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.06
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.02
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.99
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.94
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.89
KOG2695	425	consensus WD40 repeat protein [General function pr	97.85
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.84
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.82
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.8
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.79
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.72
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.7
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.69
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	97.64
PRK13616	591	lipoprotein LpqB; Provisional	97.59
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.57
COG3391	381	Uncharacterized conserved protein [Function unknow	97.55
KOG3621	726	consensus WD40 repeat-containing protein [General	97.54
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.51
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.44
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.43
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.42
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.39
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.39
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.39
PRK13616	591	lipoprotein LpqB; Provisional	97.39
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.29
PRK02888	635	nitrous-oxide reductase; Validated	97.21
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.21
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.17
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.16
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	97.15
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.14
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.1
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	97.08
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.07
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.05
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.05
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.01
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	96.95
KOG3621	726	consensus WD40 repeat-containing protein [General	96.89
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.85
KOG2444	238	consensus WD40 repeat protein [General function pr	96.79
COG3391	381	Uncharacterized conserved protein [Function unknow	96.79
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.71
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	96.7
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.7
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.68
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.67
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.56
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.53
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.39
KOG2395	644	consensus Protein involved in vacuole import and d	96.31
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	96.27
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.27
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.21
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	96.19
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.13
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.1
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.07
PRK02888	635	nitrous-oxide reductase; Validated	96.07
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.02
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.96
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	95.92
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.74
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.69
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.49
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.37
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.21
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	95.2
KOG1008	783	consensus Uncharacterized conserved protein, conta	95.02
PRK13684	334	Ycf48-like protein; Provisional	94.96
KOG2444	238	consensus WD40 repeat protein [General function pr	94.94
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	94.85
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	94.52
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.38
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	94.35
PHA02713	557	hypothetical protein; Provisional	94.03
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.87
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	93.79
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	93.78
PLN00033	398	photosystem II stability/assembly factor; Provisio	93.53
PHA02713	557	hypothetical protein; Provisional	93.26
KOG2377	657	consensus Uncharacterized conserved protein [Funct	93.03
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.96
KOG2395	644	consensus Protein involved in vacuole import and d	92.5
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	92.46
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	92.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	91.47
PLN00033	398	photosystem II stability/assembly factor; Provisio	91.28
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	91.28
KOG1008	783	consensus Uncharacterized conserved protein, conta	91.27
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	90.26
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	89.6
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	89.44
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	89.23
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.04
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	89.03
PRK10115	686	protease 2; Provisional	88.47
KOG2377	657	consensus Uncharacterized conserved protein [Funct	88.43
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	88.35
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	87.99
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	87.76
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	87.01
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	86.92
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.55
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	86.29
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	86.19
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.15
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	85.98
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	85.61
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	85.58
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	85.53
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	85.1
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	84.79
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	84.68
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	84.23
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	84.06
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	82.51
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	82.17
PHA03098	534	kelch-like protein; Provisional	81.45
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	81.33
PHA02790	480	Kelch-like protein; Provisional	81.16
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	81.13
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	81.09
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	80.73

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=4e-96  Score=682.78  Aligned_cols=597  Identities=51%  Similarity=0.854  Sum_probs=543.3

Q ss_pred             CCcceeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcE
Q 007283            2 PQLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTV   81 (609)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i   81 (609)
                      -+|.++|+|+|.++||+++.|..+|+|+.|+|++|+.+++-++.++....+|.+|...++..+|||.|.|||||+..|+|
T Consensus         4 ~~lk~~~~~lPst~Rg~~~~ig~dpkgd~ilY~nGksv~ir~i~~~~~~~iYtEH~~~vtVAkySPsG~yiASGD~sG~v   83 (603)
T KOG0318|consen    4 YELKETFASLPSTERGVPIIIGGDPKGDNILYTNGKSVIIRNIDNPASVDIYTEHAHQVTVAKYSPSGFYIASGDVSGKV   83 (603)
T ss_pred             hhhhhhccCCCcccCCcceEeccCCCCCeEEEeCCCEEEEEECCCccceeeeccccceeEEEEeCCCceEEeecCCcCcE
Confidence            38999999999999999999999999999999999999999999999888999999999999999999999999999999


Q ss_pred             EEEcCCC-CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeE
Q 007283           82 RIWGAHN-DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFR  160 (609)
Q Consensus        82 ~vWd~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~  160 (609)
                      ||||... ...++.+++...++|..++|++|+++++++|+|+++ +.++++||++..++++.||+..|.+++|.|..+++
T Consensus        84 RIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer-fg~~F~~DSG~SvGei~GhSr~ins~~~KpsRPfR  162 (603)
T KOG0318|consen   84 RIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER-FGHVFLWDSGNSVGEITGHSRRINSVDFKPSRPFR  162 (603)
T ss_pred             EEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc-eeEEEEecCCCccceeeccceeEeeeeccCCCceE
Confidence            9999876 447888999999999999999999999999999987 89999999999999999999999999999999999


Q ss_pred             EEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283          161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS  240 (609)
Q Consensus       161 i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~  240 (609)
                      ++||+.|..+.+|+.+|+|....++.|...|+|+.|+|||+++++++.||++.+||.++++.+..+....+|++.|.+++
T Consensus       163 i~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfals  242 (603)
T KOG0318|consen  163 IATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALS  242 (603)
T ss_pred             EEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999988876679999999999


Q ss_pred             ECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceee
Q 007283          241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQL  320 (609)
Q Consensus       241 ~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  320 (609)
                      |+||+..++++|.|.+++|||+..   .++.+++.+...  ++++.++|+|+++.+++.+.+|++..++..+.. .+..+
T Consensus       243 WsPDs~~~~T~SaDkt~KIWdVs~---~slv~t~~~~~~--v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~-~~~~i  316 (603)
T KOG0318|consen  243 WSPDSTQFLTVSADKTIKIWDVST---NSLVSTWPMGST--VEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS-VLKVI  316 (603)
T ss_pred             ECCCCceEEEecCCceEEEEEeec---cceEEEeecCCc--hhceEEEEEEeCCeEEEEEcCcEEEEecccCCC-hhhee
Confidence            999999999999999999999984   577787766543  778899999999999999999999999988766 77889


Q ss_pred             eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec-cccccceeEeeeeC-CcEEEEeccceEEEEeccCCc
Q 007283          321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ-RKENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQGDQ  398 (609)
Q Consensus       321 ~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~  398 (609)
                      .||.+.|+++..++. +..|++|+.||.|.-|+...+...+.. ..|..+|.+++..+ +++.+.++|.++++.++..+.
T Consensus       317 ~GHnK~ITaLtv~~d-~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~  395 (603)
T KOG0318|consen  317 SGHNKSITALTVSPD-GKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNG  395 (603)
T ss_pred             cccccceeEEEEcCC-CCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCc
Confidence            999999999998754 489999999999999999887766554 34778899988866 889999999999999886665


Q ss_pred             cccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283          399 CGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG  478 (609)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~  478 (609)
                      ..-...++++.++..++... ++...+....+++.++++......+...+...++|++|++..+|+|++|+.|++|.+.+
T Consensus       396 ~t~~~~~~lg~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g  474 (603)
T KOG0318|consen  396 YTKSEVVKLGSQPKGLAVLS-DGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSG  474 (603)
T ss_pred             ccccceeecCCCceeEEEcC-CCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEEecC
Confidence            33222246666666443322 23477788889999998887778888889999999999999999999999999999998


Q ss_pred             CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeE
Q 007283          479 DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCV  558 (609)
Q Consensus       479 ~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v  558 (609)
                      +.+..+.++..|.++|++|+||||+.+||+++..+.+.+||+.+++.....+..|++.|+|++|||+++++||||.|..|
T Consensus       475 ~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~V  554 (603)
T KOG0318|consen  475 DELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNV  554 (603)
T ss_pred             CcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEeccccceE
Confidence            88777778899999999999999999999999999999999999888777788899999999999999999999999999


Q ss_pred             EEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEEccC
Q 007283          559 IIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       559 ~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      .||+++++. ..+.++.+|..+|+.|+|.|++.++|+|+|.+||+|++.+
T Consensus       555 iiysv~kP~-~~i~iknAH~~gVn~v~wlde~tvvSsG~Da~iK~W~v~~  603 (603)
T KOG0318|consen  555 IIYSVKKPA-KHIIIKNAHLGGVNSVAWLDESTVVSSGQDANIKVWNVTL  603 (603)
T ss_pred             EEEEccChh-hheEeccccccCceeEEEecCceEEeccCcceeEEecccC
Confidence            999999876 4588899999999999999999999999999999999863

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.6e-53  Score=412.04  Aligned_cols=566  Identities=17%  Similarity=0.232  Sum_probs=439.7

Q ss_pred             EeecCCCCeEEEeCCCEEEEEeCCCCccc-ccc-ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283           22 ISGHPKSNSILYTNGRSVIILDLSNPLQV-SIY-GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        22 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~-~~~-~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      +.++++|+.|+++.++.|++-|++++... ... ..-.+.+++++++||+++|++++..+-+++|+++++++.+.....|
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~H  104 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIH  104 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhcc
Confidence            88999999999999999999999998873 222 2334679999999999999999999999999999987655444459


Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCC-eEEEEecCCCeEEEEeCCCC
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP-FRIATCGEDFLVNFYEGPPF  178 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~i~t~~~d~~i~~~~~~~~  178 (609)
                      .+||..++|+|.| .|++.|+-  +..+++|+...+.+.+.|+||.+.|.++.|+|+-. ..+++|+.|+++++||....
T Consensus       105 e~Pvi~ma~~~~g-~LlAtgga--D~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~  181 (775)
T KOG0319|consen  105 EAPVITMAFDPTG-TLLATGGA--DGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDK  181 (775)
T ss_pred             CCCeEEEEEcCCC-ceEEeccc--cceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccC
Confidence            9999999999999 55555432  23578888889999999999999999999999743 35899999999999998744


Q ss_pred             -ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-----CCeEEEEe
Q 007283          179 -KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-----GKQVLTAS  252 (609)
Q Consensus       179 -~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-----~~~l~s~s  252 (609)
                       .+...+..|...|++++|++|+..+++++.|..+.|||....+...++..    ...+.++.+-++     +.+++++|
T Consensus       182 ~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~----ye~~E~vv~l~~~~~~~~~~~~TaG  257 (775)
T KOG0319|consen  182 RTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPL----YESLESVVRLREELGGKGEYIITAG  257 (775)
T ss_pred             chHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheech----hhheeeEEEechhcCCcceEEEEec
Confidence             35677889999999999999999999999999999999988777766643    245667777776     67999999


Q ss_pred             CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283          253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV  332 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~  332 (609)
                      .+|.+++||....   +............++.  .........+++++.+.++.+|+.++. ....++-|....|..+.|
T Consensus       258 ~~g~~~~~d~es~---~~~~~~~~~~~~e~~~--~~~~~~~~~~l~vtaeQnl~l~d~~~l-~i~k~ivG~ndEI~Dm~~  331 (775)
T KOG0319|consen  258 GSGVVQYWDSESG---KCVYKQRQSDSEEIDH--LLAIESMSQLLLVTAEQNLFLYDEDEL-TIVKQIVGYNDEILDMKF  331 (775)
T ss_pred             CCceEEEEecccc---hhhhhhccCCchhhhc--ceeccccCceEEEEccceEEEEEcccc-EEehhhcCCchhheeeee
Confidence            9999999998642   2211111000111111  112234567788889999999975543 234567788899999999


Q ss_pred             ecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee--eCCcEEEEeccceEEEEeccCCcc---cccccccc
Q 007283          333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA--IEEEIVTSGFDNKIWRVSLQGDQC---GYANSIDI  407 (609)
Q Consensus       333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~---~~~~~~~~  407 (609)
                      ..+....++-++..+.+|+++..+.... ....|+..+..+..  .+..+++++.|+++..|.+..+.+   .+.....+
T Consensus       332 lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH  410 (775)
T KOG0319|consen  332 LGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGH  410 (775)
T ss_pred             cCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhccc
Confidence            9777789999999999999966544333 33345555655552  344789999999999998844432   12222234


Q ss_pred             CCCCceeEeeccCCcEEEEEe-cccEEEeeCCe-----eeEEe-------ccCCceeEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          408 GSQPKDLSVALHYPELVLVST-DSGVVLLRGAE-----VVSTI-------NLRFPVTASAIAPDGSEAIIGSQDGKLRVY  474 (609)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~-------~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw  474 (609)
                      ......+++...+..+++..+ +..+.+|.-..     ....+       .|...+++++++|+..++|+||+|.+.+||
T Consensus       411 ~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW  490 (775)
T KOG0319|consen  411 TNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIW  490 (775)
T ss_pred             ccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeee
Confidence            445555666555556665554 44566663111     01111       245679999999999999999999999999


Q ss_pred             EecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeC
Q 007283          475 SIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSL  554 (609)
Q Consensus       475 ~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~  554 (609)
                      +++.  +....++.+|+..|+||.|+|+.+.+|++|.|++|+||.+.+... ++.+.+|...|..+.|-.+|++|+|++.
T Consensus       491 ~le~--~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~~qliS~~a  567 (775)
T KOG0319|consen  491 DLEQ--LRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNGKQLISAGA  567 (775)
T ss_pred             cccC--ceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee-eeeecCccceeEeeeeeeCCcEEEeccC
Confidence            9984  444689999999999999999999999999999999999877654 6778999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          555 DTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       555 D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      ||.||+|++.+.  .....+.+|..+||+++-+ ...+++|||.|+.|.+|.=
T Consensus       568 dGliKlWnikt~--eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD  618 (775)
T KOG0319|consen  568 DGLIKLWNIKTN--ECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD  618 (775)
T ss_pred             CCcEEEEeccch--hhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence            999999999763  3345668999999999998 6678999999999999964

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-50  Score=391.28  Aligned_cols=533  Identities=18%  Similarity=0.308  Sum_probs=415.7

Q ss_pred             CCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283           10 CVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND   89 (609)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~   89 (609)
                      |++..+|..  ++.+++||+.+++|.|+.+.++|+.+++.....-.++.+|.++++||+|.+|++.+..|.+.+-.....
T Consensus        10 llGTvyr~G--nl~ft~dG~sviSPvGNrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~g~~~lvs~~~r   87 (893)
T KOG0291|consen   10 LLGTVYRAG--NLVFTKDGNSVISPVGNRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDERGRALLVSLLSR   87 (893)
T ss_pred             cccceeecC--cEEECCCCCEEEeccCCEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCCCcEEEEecccc
Confidence            778888776  899999999999999999999999998887766778999999999999999999999999988877654


Q ss_pred             ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe----------eEEEecCCccEEEEEEeeCCCe
Q 007283           90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN----------VGEFDGHSRRVLSCAFKPSRPF  159 (609)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~h~~~v~~~~~~p~~~~  159 (609)
                      -++ +.+ ..+.+|.++.|||||++++++.. +   +  +.+|..+..          -..+.+|.+.|.++.|+.|.. 
T Consensus        88 ~Vl-h~f-~fk~~v~~i~fSPng~~fav~~g-n---~--lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr-  158 (893)
T KOG0291|consen   88 SVL-HRF-NFKRGVGAIKFSPNGKFFAVGCG-N---L--LQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR-  158 (893)
T ss_pred             eee-EEE-eecCccceEEECCCCcEEEEEec-c---e--eEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc-
Confidence            332 222 24678999999999988776543 2   3  344543321          235679999999999998887 


Q ss_pred             EEEEecCCCeEEEEeCCCCce--eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------------
Q 007283          160 RIATCGEDFLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT------------------  219 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~------------------  219 (609)
                      .|++|+.|...++|.....+-  ...+.||+.+|-..-|..+...+.+.+.||.+.+|....                  
T Consensus       159 ~l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~  238 (893)
T KOG0291|consen  159 LLVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDE  238 (893)
T ss_pred             eEEeccccceEEEEEeccccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccc
Confidence            499999999999998876665  566899999999999999999999999999999996440                  


Q ss_pred             -----Ccc-ccccC-------cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283          220 -----ADK-IGELS-------PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML  286 (609)
Q Consensus       220 -----~~~-~~~~~-------~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  286 (609)
                           ++. .....       -.......|++.+|+|.-.+|+++-..|...++++..   -.+++.+....     ..+
T Consensus       239 ~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~---f~lih~LSis~-----~~I  310 (893)
T KOG0291|consen  239 EMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPD---FNLIHSLSISD-----QKI  310 (893)
T ss_pred             cccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCC---ceEEEEeeccc-----cee
Confidence                 010 00000       0011236799999999999999999999999999863   44555554321     223


Q ss_pred             EEEEEc--CCeEEEEEcC-CcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec
Q 007283          287 VGCLWQ--NDFLVIVSLG-GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ  363 (609)
Q Consensus       287 ~~~~~~--~~~~~~~~~~-g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~  363 (609)
                      ....++  ++.++.++.. |.+.+|.++.. ......+||...+.++++++ ++++++||+.||.|++|+...+.+....
T Consensus       311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsE-sYVlKQQgH~~~i~~l~YSp-Dgq~iaTG~eDgKVKvWn~~SgfC~vTF  388 (893)
T KOG0291|consen  311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSE-SYVLKQQGHSDRITSLAYSP-DGQLIATGAEDGKVKVWNTQSGFCFVTF  388 (893)
T ss_pred             eEEEecccCCEEEEcCCccceEEEEEeecc-ceeeeccccccceeeEEECC-CCcEEEeccCCCcEEEEeccCceEEEEe
Confidence            444555  7888877654 78999987643 23345689999999999974 6689999999999999998887766666


Q ss_pred             cccccceeEeee--eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeee
Q 007283          364 RKENSQIKCFAA--IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVV  441 (609)
Q Consensus       364 ~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (609)
                      ..|++.+..+.+  .+..+++++-|++++.|++..-.+                                         .
T Consensus       389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN-----------------------------------------f  427 (893)
T KOG0291|consen  389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN-----------------------------------------F  427 (893)
T ss_pred             ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce-----------------------------------------e
Confidence            667777665555  567799999999999998765321                                         1


Q ss_pred             EEecc--CCceeEEEEcCCCCEEEEEeCCC-cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEE
Q 007283          442 STINL--RFPVTASAIAPDGSEAIIGSQDG-KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW  518 (609)
Q Consensus       442 ~~~~~--~~~~~~~~~sp~g~~l~~gs~dg-~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iw  518 (609)
                      +.+..  +-...|+++.|.|..+.+|++|. .|++|+++++++.  -++.||+++|.+++|+|++..|||+|+|++||+|
T Consensus       428 RTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqll--DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW  505 (893)
T KOG0291|consen  428 RTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLL--DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIW  505 (893)
T ss_pred             eeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeee--ehhcCCCCcceeeEEccccCeEEeccccceEEEE
Confidence            11111  12367899999999999999997 8999999999874  5789999999999999999999999999999999


Q ss_pred             EccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCC-----ccee----------E---eccccCC
Q 007283          519 DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPAS-----SRMT----------I---KGAHLGG  580 (609)
Q Consensus       519 d~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~-----~~~~----------~---~~~h~~~  580 (609)
                      |+....... +...+...++.++|+|||+.||++..||.|.+||+.....     .+..          +   ..+....
T Consensus       506 ~if~s~~~v-Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~  584 (893)
T KOG0291|consen  506 DIFSSSGTV-ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKT  584 (893)
T ss_pred             EeeccCcee-eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCc
Confidence            987653333 3456888999999999999999999999999999753210     0000          0   1122356


Q ss_pred             eEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          581 VYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       581 v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      .+++.+| |+.+|++||..++|+++++.
T Consensus       585 Ftti~ySaDG~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  585 FTTICYSADGKCILAGGESNSICIYDVP  612 (893)
T ss_pred             eEEEEEcCCCCEEEecCCcccEEEEECc
Confidence            8899999 99999999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.1e-51  Score=370.95  Aligned_cols=367  Identities=25%  Similarity=0.411  Sum_probs=284.1

Q ss_pred             CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      .+...+.||...|.+++|+|++. ++++|+.|.++++||..+....++.++|...|.|++|+|||+.||+|+.||.|++|
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lw  184 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLW  184 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEe
Confidence            34567899999999999999887 69999999999999999988889999999999999999999999999999999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECC-----CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSP-----DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL  290 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~sp-----d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (609)
                      |+++++.+..-  ..+|+..|++++|.|     ..++|+++|.||.++|||+..   ++.                    
T Consensus       185 dpktg~~~g~~--l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~---~~~--------------------  239 (480)
T KOG0271|consen  185 DPKTGQQIGRA--LRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKL---GTC--------------------  239 (480)
T ss_pred             cCCCCCccccc--ccCcccceeEEeecccccCCCccceecccCCCCEEEEEccC---ceE--------------------
Confidence            99999887643  469999999999987     567999999999999999752   111                    


Q ss_pred             EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccce
Q 007283          291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI  370 (609)
Q Consensus       291 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~  370 (609)
                                                ...+.||+..|+|+.+-  ...+++++|.|++|++|+...+........|...+
T Consensus       240 --------------------------~~~lsgHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwv  291 (480)
T KOG0271|consen  240 --------------------------VRTLSGHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWV  291 (480)
T ss_pred             --------------------------EEEeccCccceEEEEEc--CCceEEecCCCceEEEEEccchhHHHhhcccchhe
Confidence                                      12356899999999984  34799999999999999876654333333344445


Q ss_pred             eEeeeeCCc-EEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCc
Q 007283          371 KCFAAIEEE-IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFP  449 (609)
Q Consensus       371 ~~~~~~~~~-~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (609)
                      ..++...+. +.++.+|-.-....                   ..                       .+.... .  ..
T Consensus       292 N~lalsTdy~LRtgaf~~t~~~~~-------------------~~-----------------------se~~~~-A--l~  326 (480)
T KOG0271|consen  292 NHLALSTDYVLRTGAFDHTGRKPK-------------------SF-----------------------SEEQKK-A--LE  326 (480)
T ss_pred             eeeeccchhhhhccccccccccCC-------------------Ch-----------------------HHHHHH-H--HH
Confidence            444443222 22222221100000                   00                       000000 0  00


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN  529 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~  529 (609)
                      -...+.--.++.+++|+.|.++.+|+-.... .....+.+|...|+.+.||||++++||||.|+.|++||-.+++. +..
T Consensus       327 rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-las  404 (480)
T KOG0271|consen  327 RYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-LAS  404 (480)
T ss_pred             HHHHhhccCcceeEEecCCceEEEecccccc-cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch-hhh
Confidence            0001112245789999999999999753222 12345789999999999999999999999999999999877765 445


Q ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          530 MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       530 ~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                      +.+|-+.|..++||.|.++|++||.|.++++|++.+.+  +..=+.||.+-|+++.|+ |+..++|||.|+.+++|.
T Consensus       405 fRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK--l~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  405 FRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK--LKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             hhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee--ecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            77899999999999999999999999999999998643  223356899999999999 889999999999999995

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.3e-47  Score=370.76  Aligned_cols=524  Identities=16%  Similarity=0.206  Sum_probs=399.4

Q ss_pred             eEEeecCCCCeEEEe-CCCEEEEEeCCCCcccccccc-CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283           20 ILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGE-HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR   97 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~   97 (609)
                      .+++..||++.|++. .+..+.+|++.+++..+.... |++||..++|+|.|.+||+|+.|+.++|||+..+. +.+.|+
T Consensus        66 ta~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~-~th~fk  144 (775)
T KOG0319|consen   66 TALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGY-CTHSFK  144 (775)
T ss_pred             heeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCE-EEEEec
Confidence            388999999988876 468899999999998888887 99999999999999999999999999999998865 456799


Q ss_pred             ecccceeEEEECCCCCE-EEEEECCCCcceEEEEEcCCC-CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC
Q 007283           98 VLSGRIDDLQWSPDGLR-IVACGDGKGKSLVRAFMWDSG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG  175 (609)
Q Consensus        98 ~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~  175 (609)
                      +|.+.|.++.|+|+-.+ ++..|+.  +..+++|+.... .++..+..|...|++++|.+++. .++++|+|.++.+||.
T Consensus       145 G~gGvVssl~F~~~~~~~lL~sg~~--D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~-~~ls~~RDkvi~vwd~  221 (775)
T KOG0319|consen  145 GHGGVVSSLLFHPHWNRWLLASGAT--DGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSL-ELLSVGRDKVIIVWDL  221 (775)
T ss_pred             CCCceEEEEEeCCccchhheeecCC--CceEEEEEcccCchHHHHHHhhhhheeeeeeccCCc-eEEEeccCcEEEEeeh
Confidence            99999999999998544 5555543  346778887743 45788899999999999999976 5899999999999998


Q ss_pred             CCCceeeeccCcccceEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEE
Q 007283          176 PPFKFKLSHRGHSNFVNCVRFSPD-----GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT  250 (609)
Q Consensus       176 ~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s  250 (609)
                      ...+...... -...+.++.+.++     |.++.|++.+|.+++||.+++++........  ...+..+...+....++.
T Consensus       222 ~~~~~l~~lp-~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~  298 (775)
T KOG0319|consen  222 VQYKKLKTLP-LYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLL  298 (775)
T ss_pred             hhhhhhheec-hhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC--chhhhcceeccccCceEE
Confidence            6554443332 2345777778777     6799999999999999999998876654322  233666666666666777


Q ss_pred             EeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeE
Q 007283          251 ASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVT  328 (609)
Q Consensus       251 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~  328 (609)
                      ...|..+.++|.++   .++.+.+-    +..+++.-.+.+.  .++++++++.+.+++|+..+.  ....+.||+..|.
T Consensus       299 vtaeQnl~l~d~~~---l~i~k~iv----G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~--~c~ii~GH~e~vl  369 (775)
T KOG0319|consen  299 VTAEQNLFLYDEDE---LTIVKQIV----GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTS--YCQIIPGHTEAVL  369 (775)
T ss_pred             EEccceEEEEEccc---cEEehhhc----CCchhheeeeecCCccceEEEEeCCCceEEEecCCC--ceEEEeCchhhee
Confidence            77899999998753   33333221    1112222223333  368999999999999976543  2347899999999


Q ss_pred             EEEEecCCCCEEEEEecCCcEEEEecCccccce----eccccccceeEeeee---CCcEEEEeccceEEEEeccCCccc-
Q 007283          329 ALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK----LQRKENSQIKCFAAI---EEEIVTSGFDNKIWRVSLQGDQCG-  400 (609)
Q Consensus       329 ~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~d~~i~~~~~~~~~~~-  400 (609)
                      +++... ++.+++|||.|+++++|..+.+....    ....|+..+.+++..   ...+++++.|..+..|.+...+.. 
T Consensus       370 SL~~~~-~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~  448 (775)
T KOG0319|consen  370 SLDVWS-SGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETA  448 (775)
T ss_pred             eeeecc-cCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCccccc
Confidence            998543 34799999999999999875432211    112355666666663   456899999999999998873321 


Q ss_pred             c-------ccccccCCCCceeEeeccCCcEEEEEe-cccEEEee--CCeeeEEec-cCCceeEEEEcCCCCEEEEEeCCC
Q 007283          401 Y-------ANSIDIGSQPKDLSVALHYPELVLVST-DSGVVLLR--GAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDG  469 (609)
Q Consensus       401 ~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~-~~~~~~~~~~sp~g~~l~~gs~dg  469 (609)
                      +       .....+..+...+.+++++ .+++.++ +....+|.  ...+...+. |+-.+.++.|+|+.+.+|++|.|+
T Consensus       449 ~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~  527 (775)
T KOG0319|consen  449 FPIVLTCRYTERAHDKDINCVAIAPND-KLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDK  527 (775)
T ss_pred             ccceehhhHHHHhhcccccceEecCCC-ceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCc
Confidence            0       0111234455556666554 3444433 45566664  233333443 667799999999999999999999


Q ss_pred             cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEE
Q 007283          470 KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV  549 (609)
Q Consensus       470 ~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l  549 (609)
                      +|+||.+++..+  .++++||...|..+.|-.+|+.|+|++.||-+++|++.+.+. ...+..|++.|++++.+|+..++
T Consensus       528 TvKIW~is~fSC--lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC-~~tlD~H~DrvWaL~~~~~~~~~  604 (775)
T KOG0319|consen  528 TVKIWSISTFSC--LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNEC-EMTLDAHNDRVWALSVSPLLDMF  604 (775)
T ss_pred             eEEEEEecccee--eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhh-hhhhhhccceeEEEeecCcccee
Confidence            999999986654  688999999999999999999999999999999999988765 34578999999999999999999


Q ss_pred             EEEeCCCeEEEEEcC
Q 007283          550 ATGSLDTCVIIYEID  564 (609)
Q Consensus       550 ~s~s~D~~v~vw~~~  564 (609)
                      +||+.||.|.+|.-.
T Consensus       605 ~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  605 VTGGGDGRIIFWKDV  619 (775)
T ss_pred             EecCCCeEEEEeecC
Confidence            999999999999743

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.5e-50  Score=358.48  Aligned_cols=367  Identities=21%  Similarity=0.328  Sum_probs=290.6

Q ss_pred             ccCcCceeEEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 007283           13 STERGRGILISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV   91 (609)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~   91 (609)
                      ..|.+..+.+.|+|+|..|++..| .++++||+.+..+..+..+|+.-|.|+++||||+.||||+.||+|++||..+++.
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~  191 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQ  191 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCc
Confidence            456788889999999999999876 7999999999999999999999999999999999999999999999999999887


Q ss_pred             eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                      ..+.+++|...|.+++|.|--                                        ..|... ++|+++.|+.++
T Consensus       192 ~g~~l~gH~K~It~Lawep~h----------------------------------------l~p~~r-~las~skDg~vr  230 (480)
T KOG0271|consen  192 IGRALRGHKKWITALAWEPLH----------------------------------------LVPPCR-RLASSSKDGSVR  230 (480)
T ss_pred             ccccccCcccceeEEeecccc----------------------------------------cCCCcc-ceecccCCCCEE
Confidence            777888888888888887732                                        012233 599999999999


Q ss_pred             EEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283          172 FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       172 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                      +||...+++.+.+.||..+|+|+.|--+| +|.+|+.|++|++|+...|.....+   +||...|+.++++.|- .|=+|
T Consensus       231 IWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~l---kGHahwvN~lalsTdy-~LRtg  305 (480)
T KOG0271|consen  231 IWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCREL---KGHAHWVNHLALSTDY-VLRTG  305 (480)
T ss_pred             EEEccCceEEEEeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhh---cccchheeeeeccchh-hhhcc
Confidence            99999999999999999999999997766 7999999999999999999888777   4899999999998652 34444


Q ss_pred             eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEE
Q 007283          252 SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALT  331 (609)
Q Consensus       252 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~  331 (609)
                      ..|.+=+-..           ..........+.                       |        ...+. .  .     
T Consensus       306 af~~t~~~~~-----------~~se~~~~Al~r-----------------------Y--------~~~~~-~--~-----  335 (480)
T KOG0271|consen  306 AFDHTGRKPK-----------SFSEEQKKALER-----------------------Y--------EAVLK-D--S-----  335 (480)
T ss_pred             ccccccccCC-----------ChHHHHHHHHHH-----------------------H--------HHhhc-c--C-----
Confidence            4443211110           000000000000                       0        00000 0  0     


Q ss_pred             EecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCC
Q 007283          332 VLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP  411 (609)
Q Consensus       332 ~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  411 (609)
                         .  ..+++|++|.++.+|+.....         .++.                                        
T Consensus       336 ---~--erlVSgsDd~tlflW~p~~~k---------kpi~----------------------------------------  361 (480)
T KOG0271|consen  336 ---G--ERLVSGSDDFTLFLWNPFKSK---------KPIT----------------------------------------  361 (480)
T ss_pred             ---c--ceeEEecCCceEEEecccccc---------cchh----------------------------------------
Confidence               0  468899999999999542110         0000                                        


Q ss_pred             ceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCC
Q 007283          412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR  491 (609)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~  491 (609)
                                                    +-..+...|+.+.||||++++|++|.|..|++|+.+++++  ...+.+|.
T Consensus       362 ------------------------------rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~--lasfRGHv  409 (480)
T KOG0271|consen  362 ------------------------------RMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF--LASFRGHV  409 (480)
T ss_pred             ------------------------------hhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcch--hhhhhhcc
Confidence                                          0001223478889999999999999999999999998876  46788999


Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283          492 GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                      ++|..++||.|.++++|||.|.++++||+.+.+.. ..+.+|.++|.+++|||||+.+++|+.|+.+++|.
T Consensus       410 ~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~-~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  410 AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK-QDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec-ccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            99999999999999999999999999999876653 35778999999999999999999999999999994

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=7.5e-45  Score=340.01  Aligned_cols=523  Identities=19%  Similarity=0.251  Sum_probs=383.4

Q ss_pred             eeEEeecCCCCeEEEeC-CCEEEEEeCCCCc--cccccccCCCCcEEEEECCCCCEEEEEeCC----CcEEEEcCCCCce
Q 007283           19 GILISGHPKSNSILYTN-GRSVIILDLSNPL--QVSIYGEHAYPATVARFSPNGEWIASADVS----GTVRIWGAHNDHV   91 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~--~~~~~~~h~~~v~~~~~sp~g~~las~~~d----~~i~vWd~~~~~~   91 (609)
                      .+.+.++|.|-++++.. .+.++|||..+..  ....+..-.++|..++|++|++.|+..+..    |.+-+||.-+.  
T Consensus        62 vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~S--  139 (603)
T KOG0318|consen   62 VTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGNS--  139 (603)
T ss_pred             eEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCCc--
Confidence            34566999999888874 5799999986632  223455567899999999999999865543    35777876543  


Q ss_pred             eeEEEeecccceeEEEECCCC-CEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283           92 LKKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV  170 (609)
Q Consensus        92 ~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i  170 (609)
                      . -++.+|+..|.++.|-|.. -++++++|+..   +.++.-..-+--.++..|...|.++.|+|||. +|++.|.|+++
T Consensus       140 v-Gei~GhSr~ins~~~KpsRPfRi~T~sdDn~---v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~-~Fat~gsDgki  214 (603)
T KOG0318|consen  140 V-GEITGHSRRINSVDFKPSRPFRIATGSDDNT---VAFFEGPPFKFKSSFREHSKFVNCVRYSPDGS-RFATAGSDGKI  214 (603)
T ss_pred             c-ceeeccceeEeeeeccCCCceEEEeccCCCe---EEEeeCCCeeeeecccccccceeeEEECCCCC-eEEEecCCccE
Confidence            2 3688999999999999976 47888887653   33443222233345678999999999999998 59999999999


Q ss_pred             EEEeCCCCceeeecc---CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe
Q 007283          171 NFYEGPPFKFKLSHR---GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ  247 (609)
Q Consensus       171 ~~~~~~~~~~~~~~~---~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  247 (609)
                      .+||..+++....+.   +|.+.|.+++|+||+.+++|++.|.+++|||+.+.+++.++.....-...-..+-|.  +..
T Consensus       215 ~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~  292 (603)
T KOG0318|consen  215 YIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDH  292 (603)
T ss_pred             EEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCe
Confidence            999999999888876   899999999999999999999999999999999999888775322112333445554  567


Q ss_pred             EEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCe
Q 007283          248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNV  327 (609)
Q Consensus       248 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v  327 (609)
                      |++.+.+|+|.+++.....   ..+.+.. +...+.  ..+...+++++++++.||.|.-|+..........-.+|...|
T Consensus       293 lItVSl~G~in~ln~~d~~---~~~~i~G-HnK~IT--aLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI  366 (603)
T KOG0318|consen  293 LITVSLSGTINYLNPSDPS---VLKVISG-HNKSIT--ALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQI  366 (603)
T ss_pred             EEEEEcCcEEEEecccCCC---hhheecc-ccccee--EEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceE
Confidence            9999999999999987432   2222221 111111  122334567999999999999999766554444457899999


Q ss_pred             EEEEEecCCCCEEEEEecCCcEEEEecCccccce-eccccccceeEeeeeCC-cEEEEeccceEEEEeccCCcccccccc
Q 007283          328 TALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK-LQRKENSQIKCFAAIEE-EIVTSGFDNKIWRVSLQGDQCGYANSI  405 (609)
Q Consensus       328 ~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~~~~~~~~~~~~~~~~  405 (609)
                      .+++....  ..++|++.|.++++-....+.... ...+...+...++..++ .++...++..+.++.-++..    ..+
T Consensus       367 ~~~~~~~~--~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~----~~~  440 (603)
T KOG0318|consen  367 KGMAASES--GELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKV----SSI  440 (603)
T ss_pred             EEEeecCC--CcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcc----eee
Confidence            99997643  578999999999998764332211 11122334445655433 46666666666665432221    122


Q ss_pred             ccCCCCceeEeeccCCcEEEEEecccEEEee--CCe---eeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe
Q 007283          406 DIGSQPKDLSVALHYPELVLVSTDSGVVLLR--GAE---VVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT  480 (609)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~  480 (609)
                      .++.+...+++.+...+..+.+-+..+.++.  +.+   ......++.+++++++|||+.+||+|...+.+.+|++.++.
T Consensus       441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~  520 (603)
T KOG0318|consen  441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE  520 (603)
T ss_pred             ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc
Confidence            3444556666666654444444444455543  322   22345678899999999999999999999999999998776


Q ss_pred             eeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEE
Q 007283          481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVII  560 (609)
Q Consensus       481 ~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~v  560 (609)
                      . ......-|++.|+||+|||+..++|+||.|..|+||++......++....|...|+.+.|- |...|++.+.|-.||+
T Consensus       521 ~-~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~  598 (603)
T KOG0318|consen  521 V-KTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKV  598 (603)
T ss_pred             e-ecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEE
Confidence            5 2334556999999999999999999999999999999988766566667899999999997 6677899999999999


Q ss_pred             EEcC
Q 007283          561 YEID  564 (609)
Q Consensus       561 w~~~  564 (609)
                      |++.
T Consensus       599 W~v~  602 (603)
T KOG0318|consen  599 WNVT  602 (603)
T ss_pred             eccc
Confidence            9874

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.8e-45  Score=342.14  Aligned_cols=529  Identities=18%  Similarity=0.284  Sum_probs=373.0

Q ss_pred             CcCcee--EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCC--------cEEEE
Q 007283           15 ERGRGI--LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSG--------TVRIW   84 (609)
Q Consensus        15 ~~~~~~--~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~--------~i~vW   84 (609)
                      +||+.+  ++...|.|+ ++|+....+++|+.+...| +.+.||.+.|.|++++||.-++|+|...|        .+|+|
T Consensus        62 YRG~dcR~Nly~lptgE-~vyfvA~V~Vl~n~ee~~Q-r~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriW  139 (626)
T KOG2106|consen   62 YRGVDCRNNLYLLPTGE-LVYFVAAVGVLYNWEERSQ-RHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIW  139 (626)
T ss_pred             ecceeeeceeEEccCcc-EEEEeccEEEEEeehhhhc-ccccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeec
Confidence            478776  888999876 7777788999999966555 56899999999999999999999988766        49999


Q ss_pred             cCCCCceeeEEEeecccceeEEEECC-CCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEE
Q 007283           85 GAHNDHVLKKEFRVLSGRIDDLQWSP-DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT  163 (609)
Q Consensus        85 d~~~~~~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t  163 (609)
                      |..+-..+ ..+-.....|.+++||+ ++-.+++.-|....+++.+|+|..+..+...+.....|..+.|+|.++..+++
T Consensus       140 dsv~L~TL-~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit  218 (626)
T KOG2106|consen  140 DSVTLSTL-HVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIIT  218 (626)
T ss_pred             ccccceee-eeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEE
Confidence            97764433 23445667899999999 44444444555567799999999988888888888889999999999999999


Q ss_pred             ecCCCeEEEEeCCCCceee---eccCc-ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283          164 CGEDFLVNFYEGPPFKFKL---SHRGH-SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV  239 (609)
Q Consensus       164 ~~~d~~i~~~~~~~~~~~~---~~~~h-~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l  239 (609)
                      +|..+ +.+|+.+...+..   .+.++ +..|.|++|.++|+ .+||..+|.|.||+..+.+...+.   ..|.+.|.++
T Consensus       219 ~Gk~H-~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~---~aH~ggv~~L  293 (626)
T KOG2106|consen  219 CGKGH-LYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQV---HAHDGGVFSL  293 (626)
T ss_pred             eCCce-EEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEe---eecCCceEEE
Confidence            99876 6677766543332   23332 36799999999997 689999999999998665543333   2799999999


Q ss_pred             EECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCcee
Q 007283          240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQ  319 (609)
Q Consensus       240 ~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  319 (609)
                      +.-.+|.+| +|+.|+.|..||-.   ..++..+..+...+.+    -...-+..-+++++..+.|..=.++  ......
T Consensus       294 ~~lr~Gtll-SGgKDRki~~Wd~~---y~k~r~~elPe~~G~i----Rtv~e~~~di~vGTtrN~iL~Gt~~--~~f~~~  363 (626)
T KOG2106|consen  294 CMLRDGTLL-SGGKDRKIILWDDN---YRKLRETELPEQFGPI----RTVAEGKGDILVGTTRNFILQGTLE--NGFTLT  363 (626)
T ss_pred             EEecCccEe-ecCccceEEecccc---ccccccccCchhcCCe----eEEecCCCcEEEeeccceEEEeeec--CCceEE
Confidence            999999765 59999999999922   2222222222222211    1122222225556555554332222  233456


Q ss_pred             eeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC-CcEEEEeccceEEEEeccCCc
Q 007283          320 LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQGDQ  398 (609)
Q Consensus       320 ~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~  398 (609)
                      ..+|......++.++.. .+++|++.|+.+++|+ +...  ........+..|..+.. +.++.+...+.-         
T Consensus       364 v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~-~~k~--~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w---------  430 (626)
T KOG2106|consen  364 VQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN-DHKL--EWTKIIEDPAECADFHPSGVVAVGTATGRW---------  430 (626)
T ss_pred             EEecccceeeEEcCCCh-hheeeccCcceEEEcc-CCce--eEEEEecCceeEeeccCcceEEEeeccceE---------
Confidence            68899999999988644 6899999999999996 2111  00111112223333321 112222222222         


Q ss_pred             cccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283          399 CGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG  478 (609)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~  478 (609)
                                               ++...+       ...++..-....+++++.++|+|.++|.|+.|+.|+||.+..
T Consensus       431 -------------------------~V~d~e-------~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~  478 (626)
T KOG2106|consen  431 -------------------------FVLDTE-------TQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSA  478 (626)
T ss_pred             -------------------------EEEecc-------cceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECC
Confidence                                     221111       112222222256899999999999999999999999999976


Q ss_pred             CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce--EEe---------------eecCCCCceEEEE
Q 007283          479 DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV--KLK---------------NMLYHTARINCLA  541 (609)
Q Consensus       479 ~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~--~~~---------------~~~~h~~~i~~l~  541 (609)
                      +.......-+.|..+|+.++||+|++++.+-+-|..+..|....-..  ..+               ....|...|..++
T Consensus       479 ~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~  558 (626)
T KOG2106|consen  479 NGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVA  558 (626)
T ss_pred             CCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhh
Confidence            55433444444558999999999999999999999999995322110  001               0123667789999


Q ss_pred             ECCCCcEEEEEeCCCeEEEEEcCCCCC-cceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          542 WSPNNSMVATGSLDTCVIIYEIDKPAS-SRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       542 ~s~d~~~l~s~s~D~~v~vw~~~~~~~-~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      -|.+.+++|+|...|+|++|..+.... ....-..+|++.|++|+|+ .++++++.+.|.+|..|++
T Consensus       559 rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  559 RSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             hhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            999999999999999999999874221 1233457899999999999 8899999999999999987

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-44  Score=351.17  Aligned_cols=566  Identities=16%  Similarity=0.194  Sum_probs=410.8

Q ss_pred             cCCCCeEEEeCCCEEEEEeCCCCcccccc--ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccc
Q 007283           25 HPKSNSILYTNGRSVIILDLSNPLQVSIY--GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR  102 (609)
Q Consensus        25 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~  102 (609)
                      +.+|+.++.++.+.+.+||+.++.....+  ..-+..|+|++-+|+.-+||.|-+||.||||+..++.. ...+.+|...
T Consensus        31 ~~~Gr~va~~a~E~vn~WdlRtge~~~~l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~-~~tfngHK~A  109 (888)
T KOG0306|consen   31 SGKGRAVAVSALEQVNIWDLRTGEIEKKLILLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI-LITFNGHKAA  109 (888)
T ss_pred             cCCCcEEEEeccccEeEEeeecchhhhhhhhhcccceEEEeeccCCcceEEEEecCceEEeeccCCCce-eeeecccccc
Confidence            34589898889999999999988443332  23456899999999999999999999999999987643 3468899999


Q ss_pred             eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee
Q 007283          103 IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL  182 (609)
Q Consensus       103 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~  182 (609)
                      |+.+.|+..|.+|++.+-+.+   +-+|+.-....+..+.||.+.|+..-|..+.. .+++++.|..|++||.++..+..
T Consensus       110 Vt~l~fd~~G~rlaSGskDt~---IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~-~lvS~sKDs~iK~WdL~tqhCf~  185 (888)
T KOG0306|consen  110 VTTLKFDKIGTRLASGSKDTD---IIVWDLVGEEGLFRLRGHKDSITQALFLNGDS-FLVSVSKDSMIKFWDLETQHCFE  185 (888)
T ss_pred             eEEEEEcccCceEeecCCCcc---EEEEEeccceeeEEeecchHHHhHHhccCCCe-EEEEeccCceEEEEecccceeee
Confidence            999999999999999765432   33444434556778899999999999987655 58999999999999999999999


Q ss_pred             eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc----cc--ccC----cCCCCccceEEEEECCCCCeEEEEe
Q 007283          183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK----IG--ELS----PEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~----~~--~~~----~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      ++..|+..+..+++.+  +.+++++.|+.+.+|+......    ..  ...    ......+....+.-.+++++++.-+
T Consensus       186 Thvd~r~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g  263 (888)
T KOG0306|consen  186 THVDHRGEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQG  263 (888)
T ss_pred             EEecccceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEec
Confidence            9999999999999988  6889999999999998621110    00  000    0112234556667778889999999


Q ss_pred             CCCcEEEeecccCC------CCc---eEE-EeccCCCCC-----------c-----cceEEEEEE--c--CCeEEEEEcC
Q 007283          253 ADKSAKVWDISEDN------HGK---LKK-TLTPSGSGG-----------V-----DDMLVGCLW--Q--NDFLVIVSLG  302 (609)
Q Consensus       253 ~d~~i~iwd~~~~~------~~~---~~~-~~~~~~~~~-----------~-----~~~~~~~~~--~--~~~~~~~~~~  302 (609)
                      .|..+.++.+....      ..+   .++ ..+......           +     ...+..+.|  .  ....++.-.+
T Consensus       264 ~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~n  343 (888)
T KOG0306|consen  264 ADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLAN  343 (888)
T ss_pred             chhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeec
Confidence            99999988764210      000   000 000000000           0     001111222  1  1122233566


Q ss_pred             CcEEEEeCCCCCCC--------ceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccccee--E
Q 007283          303 GTISIFSANDLEKS--------PLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK--C  372 (609)
Q Consensus       303 g~i~~~~~~~~~~~--------~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~--~  372 (609)
                      +++.+|.++-....        ...+.||...|.++++++.  +.++..+..+.+++|+..+.........  ..+.  +
T Consensus       344 Ntv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d--~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~  419 (888)
T KOG0306|consen  344 NTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD--SILLASGAGESIKIWNRDTLKCIRTITC--GYILASK  419 (888)
T ss_pred             CceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC--ceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEE
Confidence            77777776542111        1457899999999999854  4555555678999998875543322211  1222  3


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeC-------Cee-----
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRG-------AEV-----  440 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----  440 (609)
                      |.+-+..++++...+++-++++......... -.+......+++.++....+..+.+..+.+|..       +..     
T Consensus       420 Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti-~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~ls  498 (888)
T KOG0306|consen  420 FVPGDRYIVLGTKNGELQVFDLASASLVETI-RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLS  498 (888)
T ss_pred             ecCCCceEEEeccCCceEEEEeehhhhhhhh-hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeee
Confidence            3334566888888888888887654421111 133344566667777777777777777777741       110     


Q ss_pred             ---eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEE
Q 007283          441 ---VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV  517 (609)
Q Consensus       441 ---~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~i  517 (609)
                         .+.+.....+.|+.+||||+++|++--|.++++|-+++-.+  ...+-||.-||.|++.|||+..+++||.|++|++
T Consensus       499 l~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF--flsLYGHkLPV~smDIS~DSklivTgSADKnVKi  576 (888)
T KOG0306|consen  499 LKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF--FLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKI  576 (888)
T ss_pred             eccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee--eeeecccccceeEEeccCCcCeEEeccCCCceEE
Confidence               12334456799999999999999999999999999976554  4567899999999999999999999999999999


Q ss_pred             EEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEe
Q 007283          518 WDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSG  596 (609)
Q Consensus       518 wd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s  596 (609)
                      |-+.-+.. .+-+.+|++.|.++.|-|+..+++|++.|+.|+-||-..  -.....+.+|..-|||++.+ ++.+++|+|
T Consensus       577 WGLdFGDC-HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k--Fe~iq~L~~H~~ev~cLav~~~G~~vvs~s  653 (888)
T KOG0306|consen  577 WGLDFGDC-HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK--FEEIQKLDGHHSEVWCLAVSPNGSFVVSSS  653 (888)
T ss_pred             eccccchh-hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhh--hhhheeeccchheeeeeEEcCCCCeEEecc
Confidence            98766654 455789999999999999999999999999999998653  23456678899999999998 788999999


Q ss_pred             CCCcEEEEEcc
Q 007283          597 EDACVRVWRLT  607 (609)
Q Consensus       597 ~D~~i~~W~~~  607 (609)
                      .|++|++|.-+
T Consensus       654 hD~sIRlwE~t  664 (888)
T KOG0306|consen  654 HDKSIRLWERT  664 (888)
T ss_pred             CCceeEeeecc
Confidence            99999999764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.3e-40  Score=324.06  Aligned_cols=445  Identities=19%  Similarity=0.274  Sum_probs=343.6

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCcc--------ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQ--------VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~--------~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~   92 (609)
                      +|.++|+|..++.+.|+.+.||...+...        .+.+.||-+.|+++.|+.|.++|++|+.|-++|||++...+-+
T Consensus       101 ~i~fSPng~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~  180 (893)
T KOG0291|consen  101 AIKFSPNGKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNL  180 (893)
T ss_pred             eEEECCCCcEEEEEecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecccccc
Confidence            78999999999999999999999765433        3457799999999999999999999999999999999865532


Q ss_pred             -eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-----------------------CCe-----e-----
Q 007283           93 -KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-----------------------GTN-----V-----  138 (609)
Q Consensus        93 -~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-----------------------~~~-----~-----  138 (609)
                       ...+.+|...|.++.|..|...|.+++.+.   .+.+|..+.                       +..     .     
T Consensus       181 ~~~~l~gHkd~VvacfF~~~~~~l~tvskdG---~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~  257 (893)
T KOG0291|consen  181 FTYALNGHKDYVVACFFGANSLDLYTVSKDG---ALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTK  257 (893)
T ss_pred             ceEeccCCCcceEEEEeccCcceEEEEecCc---eEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEE
Confidence             356789999999999999999999987433   233444330                       000     0     


Q ss_pred             -EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC-CcEEEEe
Q 007283          139 -GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD-KKGIIYD  216 (609)
Q Consensus       139 -~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-~~i~iwd  216 (609)
                       .-++..+..|++++|||... .+|+|-..+...+|+.+.+.++..+.--...|..+.|+..|.+||.|+.. |.+.+|+
T Consensus       258 k~~ln~~~~kvtaa~fH~~t~-~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  258 KHYLNQNSSKVTAAAFHKGTN-LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             eeeecccccceeeeeccCCce-EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence             11223347899999999875 59999999999999999999988877667789999999999999998865 7899999


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL  296 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (609)
                      +++..-+...   ++|...+++++++|||+++++|+.||+|++||..   .+-+                          
T Consensus       337 WqsEsYVlKQ---QgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~---SgfC--------------------------  384 (893)
T KOG0291|consen  337 WQSESYVLKQ---QGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQ---SGFC--------------------------  384 (893)
T ss_pred             eeccceeeec---cccccceeeEEECCCCcEEEeccCCCcEEEEecc---CceE--------------------------
Confidence            9887755443   5899999999999999999999999999999975   1211                          


Q ss_pred             EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccc-eeccccccceeEeee
Q 007283          297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG-KLQRKENSQIKCFAA  375 (609)
Q Consensus       297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~-~~~~~~~~~~~~~~~  375 (609)
                                          ..++..|+..|+.+.|... ++.+++.|.||+||.||+....+- .+......+..|++.
T Consensus       385 --------------------~vTFteHts~Vt~v~f~~~-g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscvav  443 (893)
T KOG0291|consen  385 --------------------FVTFTEHTSGVTAVQFTAR-GNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAV  443 (893)
T ss_pred             --------------------EEEeccCCCceEEEEEEec-CCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEE
Confidence                                1345569999999999853 478999999999999998765432 233334455677776


Q ss_pred             e-CCcEEEEeccc--eEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEec-cCCcee
Q 007283          376 I-EEEIVTSGFDN--KIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRFPVT  451 (609)
Q Consensus       376 ~-~~~~~~~~~d~--~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  451 (609)
                      + .++++.++...  .|++|+++++.                                         ++..+. |..||.
T Consensus       444 D~sGelV~AG~~d~F~IfvWS~qTGq-----------------------------------------llDiLsGHEgPVs  482 (893)
T KOG0291|consen  444 DPSGELVCAGAQDSFEIFVWSVQTGQ-----------------------------------------LLDILSGHEGPVS  482 (893)
T ss_pred             cCCCCEEEeeccceEEEEEEEeecCe-----------------------------------------eeehhcCCCCcce
Confidence            4 34455444333  47777766543                                         122222 457899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE----
Q 007283          452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL----  527 (609)
Q Consensus       452 ~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~----  527 (609)
                      +++|+|+|..||+||.|.+||+|++-..... ..++ .+...+..++|+|||+-+|++..||.|.+||.....+..    
T Consensus       483 ~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-vEtl-~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Idg  560 (893)
T KOG0291|consen  483 GLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-VETL-EIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDG  560 (893)
T ss_pred             eeEEccccCeEEeccccceEEEEEeeccCce-eeeE-eeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccc
Confidence            9999999999999999999999998543211 1222 366789999999999999999999999999976533220    


Q ss_pred             -e--------------eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          528 -K--------------NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       528 -~--------------~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                       +              .-......++.++||+||+.+.+|+..+.|++|+++.
T Consensus       561 rkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~  613 (893)
T KOG0291|consen  561 RKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPE  613 (893)
T ss_pred             hhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECch
Confidence             0              0011235689999999999999999999999999865

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.7e-43  Score=320.40  Aligned_cols=201  Identities=27%  Similarity=0.438  Sum_probs=185.1

Q ss_pred             cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCC--CCEEEEEECCCCcceEEEEEc
Q 007283           55 EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~  132 (609)
                      |-..+|..+.||+|++.||||+.+|+++||..++.. +...|.+|...|.++.|+|.  +..|++++.+.   .+++|..
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~-~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dg---tvklw~~  248 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCN-LLQTLRGHTSRVGAAVFHPVDSDLNLATASADG---TVKLWKL  248 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcc-eeEEEeccccceeeEEEccCCCccceeeeccCC---ceeeecc
Confidence            557799999999999999999999999999998763 55679999999999999997  56888887544   4678888


Q ss_pred             CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      +....++.+.+|..+|..++|||+|.+ ++|++.|.+.++||..+........||...|.+++|.|||.+++||+-|..-
T Consensus       249 ~~e~~l~~l~gH~~RVs~VafHPsG~~-L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~  327 (459)
T KOG0272|consen  249 SQETPLQDLEGHLARVSRVAFHPSGKF-LGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLG  327 (459)
T ss_pred             CCCcchhhhhcchhhheeeeecCCCce-eeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchh
Confidence            888899999999999999999999996 9999999999999999988887889999999999999999999999999999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +|||.+++.++..+   .+|..+|.+++|+|+|..|||||.|++++|||++
T Consensus       328 RvWDlRtgr~im~L---~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR  375 (459)
T KOG0272|consen  328 RVWDLRTGRCIMFL---AGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLR  375 (459)
T ss_pred             heeecccCcEEEEe---cccccceeeEeECCCceEEeecCCCCcEEEeeec
Confidence            99999999999877   4899999999999999999999999999999986

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.3e-42  Score=316.92  Aligned_cols=283  Identities=27%  Similarity=0.427  Sum_probs=244.9

Q ss_pred             ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC--CCEEEEEeCCCcEEEEeCCC
Q 007283          142 DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD--GSKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       142 ~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~~d~~i~iwd~~~  219 (609)
                      .+.+.+|..+.|++++. .||||+.+|.+++|..+......++.||...|.++.|+|.  +..+|||+.||++++|+..+
T Consensus       172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~  250 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQ  250 (459)
T ss_pred             ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCC
Confidence            36678999999999997 4999999999999999999999999999999999999998  55899999999999999988


Q ss_pred             CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEE
Q 007283          220 ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV  299 (609)
Q Consensus       220 ~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (609)
                      ...+..+   .+|...|..++|+|+|++|+|+|.|.+-|+||+..+.                                 
T Consensus       251 e~~l~~l---~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~---------------------------------  294 (459)
T KOG0272|consen  251 ETPLQDL---EGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKS---------------------------------  294 (459)
T ss_pred             Ccchhhh---hcchhhheeeeecCCCceeeecccccchhhcccccch---------------------------------
Confidence            8777776   4899999999999999999999999999999986310                                 


Q ss_pred             EcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCc
Q 007283          300 SLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEE  379 (609)
Q Consensus       300 ~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (609)
                                      ......||...                                                     
T Consensus       295 ----------------ElL~QEGHs~~-----------------------------------------------------  305 (459)
T KOG0272|consen  295 ----------------ELLLQEGHSKG-----------------------------------------------------  305 (459)
T ss_pred             ----------------hhHhhcccccc-----------------------------------------------------
Confidence                            01122345433                                                     


Q ss_pred             EEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCC
Q 007283          380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDG  459 (609)
Q Consensus       380 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g  459 (609)
                                                                                            |.+++|.|||
T Consensus       306 ----------------------------------------------------------------------v~~iaf~~DG  315 (459)
T KOG0272|consen  306 ----------------------------------------------------------------------VFSIAFQPDG  315 (459)
T ss_pred             ----------------------------------------------------------------------cceeEecCCC
Confidence                                                                                  3445667788


Q ss_pred             CEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEE
Q 007283          460 SEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC  539 (609)
Q Consensus       460 ~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~  539 (609)
                      ..+++|+.|..-||||++++..  .-++.+|...|..|+|||+|..+|+||.|++++|||++.... +..+.+|+.-|+.
T Consensus       316 SL~~tGGlD~~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-ly~ipAH~nlVS~  392 (459)
T KOG0272|consen  316 SLAATGGLDSLGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-LYTIPAHSNLVSQ  392 (459)
T ss_pred             ceeeccCccchhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccccc-ceecccccchhhh
Confidence            8888899999999999987765  457889999999999999999999999999999999877655 4457789999999


Q ss_pred             EEECC-CCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          540 LAWSP-NNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       540 l~~s~-d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                      |+|+| .|++|+|++.|+++++|.-..-  ..+..+.||.+.|.+++.+ |++.|+|+|.|+++|+|.
T Consensus       393 Vk~~p~~g~fL~TasyD~t~kiWs~~~~--~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  393 VKYSPQEGYFLVTASYDNTVKIWSTRTW--SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eEecccCCeEEEEcccCcceeeecCCCc--ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            99999 6899999999999999986542  4456677999999999999 889999999999999995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=5.5e-40  Score=317.11  Aligned_cols=574  Identities=20%  Similarity=0.283  Sum_probs=381.8

Q ss_pred             eEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCC---EEEEEeCCCcEEEEcCCCCc-eeeEE
Q 007283           20 ILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGE---WIASADVSGTVRIWGAHNDH-VLKKE   95 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~---~las~~~d~~i~vWd~~~~~-~~~~~   95 (609)
                      ...+..|. ..++|..+..|.++|-.+......+.||...|+|+.+-|+.+   +++||+.|+.|++|.+.... .....
T Consensus        18 ~v~sw~~~-~~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~   96 (764)
T KOG1063|consen   18 KVSSWGPG-GLVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT   96 (764)
T ss_pred             cccccccc-ceEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe
Confidence            34455554 468888999999999888777788999999999999999888   89999999999999998443 23344


Q ss_pred             EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCe---eEEEecCCcc--EEEEEEee-CCCeEEEEecCCC
Q 007283           96 FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTN---VGEFDGHSRR--VLSCAFKP-SRPFRIATCGEDF  168 (609)
Q Consensus        96 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~h~~~--v~~~~~~p-~~~~~i~t~~~d~  168 (609)
                      +.+|...+  ++++.-- .+.++.  ....++  ..|+. +..   +..+.-....  -.++++.| .+.+++|.|+.+.
T Consensus        97 ~~g~~~~~--~cv~a~~-~~~~~~--~ad~~v--~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~  169 (764)
T KOG1063|consen   97 IQGHCKEC--VCVVARS-SVMTCK--AADGTV--SVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF  169 (764)
T ss_pred             ecCcceeE--EEEEeee-eEEEee--ccCceE--EEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce
Confidence            55544444  4444322 222221  112233  44544 222   1222211222  23566667 5556678888889


Q ss_pred             eEEEEeCC--CCceeeeccCcccceEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCcccc------------------c
Q 007283          169 LVNFYEGP--PFKFKLSHRGHSNFVNCVRFSPDGS---KFISVSSDKKGIIYDGKTADKIG------------------E  225 (609)
Q Consensus       169 ~i~~~~~~--~~~~~~~~~~h~~~v~~l~~s~dg~---~l~s~~~d~~i~iwd~~~~~~~~------------------~  225 (609)
                      .+.++...  .++....+.||.+.|.+++|...+.   +||++|.|..|+||.+.-+....                  .
T Consensus       170 ~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~  249 (764)
T KOG1063|consen  170 VVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMI  249 (764)
T ss_pred             EEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeee
Confidence            99998643  4566778999999999999987654   78999999999999643222000                  0


Q ss_pred             c----------CcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC-
Q 007283          226 L----------SPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND-  294 (609)
Q Consensus       226 ~----------~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  294 (609)
                      +          ....||...|+++.|+|.+..|+++|.|.++.+|...+ +.+.....+...+-++......++.|+++ 
T Consensus       250 l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~-~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~  328 (764)
T KOG1063|consen  250 LEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDE-NTGIWVDVVRLGEVGGSAGGFWGGLWSPNS  328 (764)
T ss_pred             eeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCC-ccceEEEEEEeecccccccceeeEEEcCCC
Confidence            0          01248999999999999999999999999999998754 34556666655544444445677888755 


Q ss_pred             -eEEEEEcCCcEEEEeCCCCC--CCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccc--ce--eccccc
Q 007283          295 -FLVIVSLGGTISIFSANDLE--KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG--GK--LQRKEN  367 (609)
Q Consensus       295 -~~~~~~~~g~i~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~--~~--~~~~~~  367 (609)
                       .+++-+..|..++|...+..  .......||.+.|..+++.+ .+.++++.|.|.+-|++.....+.  ..  .+..|.
T Consensus       329 ~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~p-sGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHG  407 (764)
T KOG1063|consen  329 NVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDP-SGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHG  407 (764)
T ss_pred             CEEEEecccCcEEEEeccCccceeeccccccccccceeeeecC-CCCEEEEeccccceeeecccccccceeeeccccccc
Confidence             57777889999999833322  22235689999999999975 457999999999999985541110  00  111244


Q ss_pred             cceeEeeeeC-CcEEEEeccce-EEEEeccCCccccccccc---------cC--CCCceeEeeccCCcEEE-EEecccE-
Q 007283          368 SQIKCFAAIE-EEIVTSGFDNK-IWRVSLQGDQCGYANSID---------IG--SQPKDLSVALHYPELVL-VSTDSGV-  432 (609)
Q Consensus       368 ~~~~~~~~~~-~~~~~~~~d~~-i~~~~~~~~~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~-~~~~~~~-  432 (609)
                      ..+.|+++.+ +....++.|++ +++++.+.....-...+.         ..  .....+.++  .+..+. .....+. 
T Consensus       408 yDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLS--nKa~~~~e~~~G~~~  485 (764)
T KOG1063|consen  408 YDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLS--NKAFFPGETNTGGEA  485 (764)
T ss_pred             ccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccccccccccccc--CCCCccccccccccc
Confidence            5677888754 44444555555 566666554321000000         00  000111111  101110 0000000 


Q ss_pred             -------------EEee--------CC----eeeEEeccCCceeEEEEcCCCCEEEEEeCCC-----cEEEEEecCCeee
Q 007283          433 -------------VLLR--------GA----EVVSTINLRFPVTASAIAPDGSEAIIGSQDG-----KLRVYSIRGDTLT  482 (609)
Q Consensus       433 -------------~~~~--------~~----~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg-----~i~iw~~~~~~~~  482 (609)
                                   .+..        .+    +..+.+.|.+++.+++++|+|+++|++++..     .|++|+...... 
T Consensus       486 ~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~-  564 (764)
T KOG1063|consen  486 AVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ-  564 (764)
T ss_pred             ceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh-
Confidence                         0000        00    1112234678899999999999999998875     589999876543 


Q ss_pred             eeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc---eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEE
Q 007283          483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE---VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVI  559 (609)
Q Consensus       483 ~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~  559 (609)
                       ...+++|.-.|+.++|||||++|++.|.|+++.+|......   ......+.|+.-|+++.|+||++++||+|.|++|+
T Consensus       565 -~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk  643 (764)
T KOG1063|consen  565 -VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK  643 (764)
T ss_pred             -hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence             34688999999999999999999999999999999865432   22334678999999999999999999999999999


Q ss_pred             EEEcCCCCCcc-ee-EeccccCCeEEEEEcC-C----CeEEE-EeCCCcEEEEEcc
Q 007283          560 IYEIDKPASSR-MT-IKGAHLGGVYGLAFTD-E----HSVVS-SGEDACVRVWRLT  607 (609)
Q Consensus       560 vw~~~~~~~~~-~~-~~~~h~~~v~~~~~s~-~----~~l~s-~s~D~~i~~W~~~  607 (609)
                      ||..+...... .. -...++..|+++++.+ .    ..+++ |=+-|.|.+|+.+
T Consensus       644 VW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  644 VWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             EEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence            99986542111 11 2235888999999862 1    22555 5578999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=1.7e-39  Score=316.22  Aligned_cols=493  Identities=17%  Similarity=0.234  Sum_probs=347.8

Q ss_pred             EEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283           21 LISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        21 ~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      .+..+|+.-.|+-+ .++.|.||++........+.||+.-|+++.|+..|..||||+.|+.|.|||+.....+ ..+++|
T Consensus        70 ~l~~~~d~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl-~rL~GH  148 (888)
T KOG0306|consen   70 CLRSSDDILLLAVGYADGSVQIFSLESEEILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGL-FRLRGH  148 (888)
T ss_pred             EeeccCCcceEEEEecCceEEeeccCCCceeeeecccccceEEEEEcccCceEeecCCCccEEEEEeccceee-EEeecc
Confidence            45566776666644 4579999999988888889999999999999999999999999999999999875543 468999


Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC--
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP--  177 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~--  177 (609)
                      +..|+.+-|..+...|++++-+   .++++|+.++..+..+...|...++.+++++   .++++++.|..+++|+...  
T Consensus       149 kd~iT~~~F~~~~~~lvS~sKD---s~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~  222 (888)
T KOG0306|consen  149 KDSITQALFLNGDSFLVSVSKD---SMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFED  222 (888)
T ss_pred             hHHHhHHhccCCCeEEEEeccC---ceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeeccc
Confidence            9999999999988899988743   3789999999999999999999999999998   3688999999999997510  


Q ss_pred             --------Cce--eeec-cCcccceEEEEEcCCCCEEEEEeCCCcEE---------------------------------
Q 007283          178 --------FKF--KLSH-RGHSNFVNCVRFSPDGSKFISVSSDKKGI---------------------------------  213 (609)
Q Consensus       178 --------~~~--~~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i~---------------------------------  213 (609)
                              ...  ...+ +.-++..-.+...+++++|+.-+.|..+.                                 
T Consensus       223 D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~  302 (888)
T KOG0306|consen  223 DEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDD  302 (888)
T ss_pred             ccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccc
Confidence                    000  0000 11111122233344444444444444443                                 


Q ss_pred             ---------------------------------------------EEeCCC-Ccc------ccccCcCCCCccceEEEEE
Q 007283          214 ---------------------------------------------IYDGKT-ADK------IGELSPEDGHKGSVYAVSW  241 (609)
Q Consensus       214 ---------------------------------------------iwd~~~-~~~------~~~~~~~~~h~~~V~~l~~  241 (609)
                                                                   .|.... ++.      ...+ ...||...|.++++
T Consensus       303 v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i-~~~GHR~dVRsl~v  381 (888)
T KOG0306|consen  303 VEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNI-EIGGHRSDVRSLCV  381 (888)
T ss_pred             hhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCcccccccee-eeccchhheeEEEe
Confidence                                                         332221 000      0001 12379999999999


Q ss_pred             CCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEE-EEEEcCCeEEEEEcCCcEEEEeCCCCCCCceee
Q 007283          242 SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLV-GCLWQNDFLVIVSLGGTISIFSANDLEKSPLQL  320 (609)
Q Consensus       242 spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  320 (609)
                      |.|...++|++ .+.+++|+..   ..+.+.++...      .... .+...+.+++++...|.+.+|++.... .....
T Consensus       382 S~d~~~~~Sga-~~SikiWn~~---t~kciRTi~~~------y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~-l~Eti  450 (888)
T KOG0306|consen  382 SSDSILLASGA-GESIKIWNRD---TLKCIRTITCG------YILASKFVPGDRYIVLGTKNGELQVFDLASAS-LVETI  450 (888)
T ss_pred             ecCceeeeecC-CCcEEEEEcc---CcceeEEeccc------cEEEEEecCCCceEEEeccCCceEEEEeehhh-hhhhh
Confidence            99998888886 5689999986   46677776533      1222 223345688899999999999875432 22345


Q ss_pred             eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccc
Q 007283          321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG  400 (609)
Q Consensus       321 ~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  400 (609)
                      ..|.+.++.++..+ ++.-++|||.|.+|++|+......  ..+                    ...++  +.+.     
T Consensus       451 ~AHdgaIWsi~~~p-D~~g~vT~saDktVkfWdf~l~~~--~~g--------------------t~~k~--lsl~-----  500 (888)
T KOG0306|consen  451 RAHDGAIWSISLSP-DNKGFVTGSADKTVKFWDFKLVVS--VPG--------------------TQKKV--LSLK-----  500 (888)
T ss_pred             hccccceeeeeecC-CCCceEEecCCcEEEEEeEEEEec--cCc--------------------cccee--eeec-----
Confidence            68999999999875 457899999999999997542111  000                    00000  0000     


Q ss_pred             cccccccCCCCceeEeeccCCcEEEEEecccEEEe--eCCee-eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec
Q 007283          401 YANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLL--RGAEV-VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR  477 (609)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~  477 (609)
                      ..+.+++......+++++++.-+.+.-.++.+..+  ++... +....|+.||.|+.+|||.+.+++||.|.+|++|-++
T Consensus       501 ~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLd  580 (888)
T KOG0306|consen  501 HTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLD  580 (888)
T ss_pred             cceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccc
Confidence            01112222222233333333222222234443333  22222 2223477899999999999999999999999999887


Q ss_pred             CCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCe
Q 007283          478 GDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTC  557 (609)
Q Consensus       478 ~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~  557 (609)
                      -+.+  -+.+-+|...|.+|.|-|+...+.+++.|+.++-||-..-+. +..+.+|...|+|++.+|+|.+++++|.|.+
T Consensus       581 FGDC--HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~-iq~L~~H~~ev~cLav~~~G~~vvs~shD~s  657 (888)
T KOG0306|consen  581 FGDC--HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE-IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKS  657 (888)
T ss_pred             cchh--hhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhhh-heeeccchheeeeeEEcCCCCeEEeccCCce
Confidence            6654  345678999999999999999999999999999999655443 3457899999999999999999999999999


Q ss_pred             EEEEEcCC
Q 007283          558 VIIYEIDK  565 (609)
Q Consensus       558 v~vw~~~~  565 (609)
                      |++|....
T Consensus       658 IRlwE~td  665 (888)
T KOG0306|consen  658 IRLWERTD  665 (888)
T ss_pred             eEeeeccC
Confidence            99998654

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=6.6e-38  Score=303.04  Aligned_cols=535  Identities=17%  Similarity=0.228  Sum_probs=368.8

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe--CCCcEEEEcCCCCceeeEEEee
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD--VSGTVRIWGAHNDHVLKKEFRV   98 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~--~d~~i~vWd~~~~~~~~~~~~~   98 (609)
                      .++..|..-.++|++|..+++|+....+|.+....|+..++|+||||+|+|+|+|.  ....+|||++.... ...+|..
T Consensus        42 gLa~~p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvnssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~-vVAEfvd  120 (1080)
T KOG1408|consen   42 GLASVPCSGLCAYPAGCVVVLFNVDSCTQSHLVNSSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHG-VVAEFVD  120 (1080)
T ss_pred             cccccccccceeeccCcEEEEEcccccchhheecccCcceeEEEEcCCCcEEEecccCCCccceeeeecccc-chhhhhh
Confidence            57788888889999999999999988888888888999999999999999999987  45679999998765 3356788


Q ss_pred             cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC
Q 007283           99 LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF  178 (609)
Q Consensus        99 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~  178 (609)
                      |.=.|++++|+|.+++++++|..-+. ++.+|+|..+..... +.-+..|..++|+.++.+ ++|.+.-+ +++|-.+-.
T Consensus       121 HKY~vtcvaFsp~~kyvvSVGsQHDM-IVnv~dWr~N~~~as-nkiss~Vsav~fsEdgSY-fvT~gnrH-vk~wyl~~~  196 (1080)
T KOG1408|consen  121 HKYNVTCVAFSPGNKYVVSVGSQHDM-IVNVNDWRVNSSGAS-NKISSVVSAVAFSEDGSY-FVTSGNRH-VKLWYLQIQ  196 (1080)
T ss_pred             ccccceeeeecCCCcEEEeeccccce-EEEhhhhhhcccccc-cccceeEEEEEEccCCce-eeeeeeee-EEEEEeecc
Confidence            88899999999999999999965443 678888886543221 223567889999999986 77776655 566632211


Q ss_pred             c-ee------------------------------------eeccCcc-----------------cceEEEEEcCCCCEEE
Q 007283          179 K-FK------------------------------------LSHRGHS-----------------NFVNCVRFSPDGSKFI  204 (609)
Q Consensus       179 ~-~~------------------------------------~~~~~h~-----------------~~v~~l~~s~dg~~l~  204 (609)
                      + ..                                    .+-.||.                 -..+|++.+  .++|+
T Consensus       197 ~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs--~r~I~  274 (1080)
T KOG1408|consen  197 SKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVS--SRLIA  274 (1080)
T ss_pred             ccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeee--cceEE
Confidence            1 00                                    0011221                 123455554  45899


Q ss_pred             EEeCCCcEEEEeCCCCccccccCcC------------CCCc---------cceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          205 SVSSDKKGIIYDGKTADKIGELSPE------------DGHK---------GSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       205 s~~~d~~i~iwd~~~~~~~~~~~~~------------~~h~---------~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .|+.+|.|++++..+-+-+.++.-.            ..|.         -...++.|.|....|.+.-.|..+++||++
T Consensus       275 cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvr  354 (1080)
T KOG1408|consen  275 CGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVR  354 (1080)
T ss_pred             EeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecc
Confidence            9999999999987765544333210            0010         123577899988999999999999999997


Q ss_pred             cCC-CCceEEEeccCC--------CCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCC--C-------------c--
Q 007283          264 EDN-HGKLKKTLTPSG--------SGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEK--S-------------P--  317 (609)
Q Consensus       264 ~~~-~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~--~-------------~--  317 (609)
                      .-+ .++....+....        +..+......|+ ...-+++.+.|++|++|++.....  .             +  
T Consensus       355 D~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~acl-p~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~  433 (1080)
T KOG1408|consen  355 DVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACL-PRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYE  433 (1080)
T ss_pred             ccccccceeeeeeccceeeeeccccccccCcccccC-CccceeEecCCCcEEEeecccccccceeecccchhhhhcCccc
Confidence            532 122221111100        001111111122 123477889999999998653100  0             0  


Q ss_pred             ---e----------------eeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee--
Q 007283          318 ---L----------------QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI--  376 (609)
Q Consensus       318 ---~----------------~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~--  376 (609)
                         .                .+.+....+.++++++ +++.+++|..-|+++++++..-........|.+.|.|+...  
T Consensus       434 d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp-~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p  512 (1080)
T KOG1408|consen  434 DSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSP-DGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP  512 (1080)
T ss_pred             cCchhhhhhccCCcccccchhhcCcccceEEEEECC-CcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc
Confidence               0                0111223567777764 56899999999999999876544434334577788888764  


Q ss_pred             ---CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEE-EEEecccEEEeeCCee---eEEe---c-
Q 007283          377 ---EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELV-LVSTDSGVVLLRGAEV---VSTI---N-  445 (609)
Q Consensus       377 ---~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~---~-  445 (609)
                         ...+++++.|.-|++++...+.--....-.+....+.+.++-.+.... +..+.+..+.++.++.   ...+   . 
T Consensus       513 ~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~  592 (1080)
T KOG1408|consen  513 VLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQ  592 (1080)
T ss_pred             hhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecccccc
Confidence               344778888999999998766431111123344556666665543332 2333333333332211   0000   0 


Q ss_pred             --cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeE-EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283          446 --LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       446 --~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~-~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~  522 (609)
                        .+..+..+++.|.-++++++++|+.||||+++++++.... --.+|.+..-.|...|.|.|+|+.+.|+++-++|+.+
T Consensus       593 t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~s  672 (1080)
T KOG1408|consen  593 TLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVS  672 (1080)
T ss_pred             ccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEecc
Confidence              1245778999999999999999999999999988764321 1245778888999999999999999999999999988


Q ss_pred             CceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          523 REVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       523 ~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      ++. +..+.+|..-|+.+.|++|.++|++.+.||.|.||.++.
T Consensus       673 gEc-vA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  673 GEC-VAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             chh-hhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            876 445789999999999999999999999999999999753

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.1e-38  Score=277.74  Aligned_cols=288  Identities=22%  Similarity=0.362  Sum_probs=242.8

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      +++.||.+.|.++.|++|+++|+|+|.||.+.|||..+.... +.++.....|-.++|+|.|+.+++.|-++.   -.++
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~-haipl~s~WVMtCA~sPSg~~VAcGGLdN~---Csiy  124 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKV-HAIPLPSSWVMTCAYSPSGNFVACGGLDNK---CSIY  124 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccce-eEEecCceeEEEEEECCCCCeEEecCcCce---eEEE
Confidence            578999999999999999999999999999999999875422 335556778999999999998888775442   3345


Q ss_pred             EcCCC------CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcC-CCCEE
Q 007283          131 MWDSG------TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP-DGSKF  203 (609)
Q Consensus       131 ~~~~~------~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l  203 (609)
                      .....      +...++.+|+..+.+|.|-+|+.  |+|++.|.+.-+||+++++....|.||...|.++.++| +++.+
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~--ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntF  202 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH--ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTF  202 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcCCCc--eEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeE
Confidence            55422      23456899999999999998664  99999999999999999999999999999999999999 89999


Q ss_pred             EEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCcc
Q 007283          204 ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVD  283 (609)
Q Consensus       204 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  283 (609)
                      ++|+.|+..++||.+.+.+...+   .+|.+-|++++|.|+|.-+++||.|++.|+||++.++   .+            
T Consensus       203 vSg~cD~~aklWD~R~~~c~qtF---~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~---~~------------  264 (343)
T KOG0286|consen  203 VSGGCDKSAKLWDVRSGQCVQTF---EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQ---EL------------  264 (343)
T ss_pred             EecccccceeeeeccCcceeEee---cccccccceEEEccCCCeeeecCCCceeEEEeecCCc---EE------------
Confidence            99999999999999999988877   4899999999999999999999999999999987321   00            


Q ss_pred             ceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec
Q 007283          284 DMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ  363 (609)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~  363 (609)
                                            .+|.             |            .+                          
T Consensus       265 ----------------------a~ys-------------~------------~~--------------------------  271 (343)
T KOG0286|consen  265 ----------------------AVYS-------------H------------DS--------------------------  271 (343)
T ss_pred             ----------------------eeec-------------c------------Cc--------------------------
Confidence                                  0000             0            00                          


Q ss_pred             cccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEE
Q 007283          364 RKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVST  443 (609)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (609)
                                                                                                      
T Consensus       272 --------------------------------------------------------------------------------  271 (343)
T KOG0286|consen  272 --------------------------------------------------------------------------------  271 (343)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 007283          444 INLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD  519 (609)
Q Consensus       444 ~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd  519 (609)
                        ..+++++++||-.|++|.+|-.|.++.+||.-.+..  ..++.+|.+.|+||..+|||..+++||+|.++|||.
T Consensus       272 --~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~--vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  272 --IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER--VGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             --ccCCceeEEEcccccEEEeeecCCceeEeeccccce--EEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence              003478889999999999999999999999765543  457889999999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=3.5e-38  Score=274.65  Aligned_cols=293  Identities=21%  Similarity=0.337  Sum_probs=241.1

Q ss_pred             eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283          181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW  260 (609)
Q Consensus       181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw  260 (609)
                      .+.++||...|.++.|++|++.|++++.||.++|||..+..+.+.+.   -....|..++|+|.|+++|+|+.|+...||
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haip---l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIP---LPSSWVMTCAYSPSGNFVACGGLDNKCSIY  124 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEe---cCceeEEEEEECCCCCeEEecCcCceeEEE
Confidence            46789999999999999999999999999999999998887766553   246789999999999999999999999999


Q ss_pred             ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283          261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI  340 (609)
Q Consensus       261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  340 (609)
                      +++....                                  ++.         .....++.+|+..+.+..|.+  ...|
T Consensus       125 ~ls~~d~----------------------------------~g~---------~~v~r~l~gHtgylScC~f~d--D~~i  159 (343)
T KOG0286|consen  125 PLSTRDA----------------------------------EGN---------VRVSRELAGHTGYLSCCRFLD--DNHI  159 (343)
T ss_pred             ecccccc----------------------------------ccc---------ceeeeeecCccceeEEEEEcC--CCce
Confidence            9863100                                  000         011246789999999999976  3689


Q ss_pred             EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283          341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY  420 (609)
Q Consensus       341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (609)
                      +|+|.|.++.+||..+++.....                                                         
T Consensus       160 lT~SGD~TCalWDie~g~~~~~f---------------------------------------------------------  182 (343)
T KOG0286|consen  160 LTGSGDMTCALWDIETGQQTQVF---------------------------------------------------------  182 (343)
T ss_pred             EecCCCceEEEEEcccceEEEEe---------------------------------------------------------
Confidence            99999999999987654211100                                                         


Q ss_pred             CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEE
Q 007283          421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY  499 (609)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~  499 (609)
                                             ..|...|.+++++| +++.+++|+-|+..++||++.+..  .+.+.+|+..|++|.|
T Consensus       183 -----------------------~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c--~qtF~ghesDINsv~f  237 (343)
T KOG0286|consen  183 -----------------------HGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQC--VQTFEGHESDINSVRF  237 (343)
T ss_pred             -----------------------cCCcccEEEEecCCCCCCeEEecccccceeeeeccCcce--eEeecccccccceEEE
Confidence                                   01223477888999 999999999999999999998754  6789999999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCceEEe-eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecccc
Q 007283          500 SPDVSMFASGDVNREAIVWDRVSREVKLK-NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHL  578 (609)
Q Consensus       500 s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~  578 (609)
                      -|+|..+++||.|+++|+||++..+.... .-..-..+|++++||..|++|++|..|.++.|||.-+  .++...+.||.
T Consensus       238 fP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk--~e~vg~L~GHe  315 (343)
T KOG0286|consen  238 FPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLK--GERVGVLAGHE  315 (343)
T ss_pred             ccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccc--cceEEEeeccC
Confidence            99999999999999999999877543221 1112346799999999999999999999999999753  35677788999


Q ss_pred             CCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          579 GGVYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       579 ~~v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                      .+|.++..+ |+..+.|||.|..+|+|.
T Consensus       316 NRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  316 NRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             CeeEEEEECCCCcEEEecchhHheeecC
Confidence            999999999 778899999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=9.4e-38  Score=265.75  Aligned_cols=271  Identities=23%  Similarity=0.353  Sum_probs=221.8

Q ss_pred             EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCC
Q 007283          202 KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG  281 (609)
Q Consensus       202 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~  281 (609)
                      +|++++.|.+|++|...+|.+..++.   ...+.|+.+...||+++||+++ ..+||+||++..+.              
T Consensus        12 iLvsA~YDhTIRfWqa~tG~C~rTiq---h~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np--------------   73 (311)
T KOG0315|consen   12 ILVSAGYDHTIRFWQALTGICSRTIQ---HPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNP--------------   73 (311)
T ss_pred             EEEeccCcceeeeeehhcCeEEEEEe---cCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCC--------------
Confidence            78999999999999999999998884   2346799999999999999987 46899999974221              


Q ss_pred             ccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccce
Q 007283          282 VDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK  361 (609)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~  361 (609)
                                                       .+...+.+|.++|..+.|. .++++++|||.||++++|++..-.   
T Consensus        74 ---------------------------------~Pv~t~e~h~kNVtaVgF~-~dgrWMyTgseDgt~kIWdlR~~~---  116 (311)
T KOG0315|consen   74 ---------------------------------NPVATFEGHTKNVTAVGFQ-CDGRWMYTGSEDGTVKIWDLRSLS---  116 (311)
T ss_pred             ---------------------------------CceeEEeccCCceEEEEEe-ecCeEEEecCCCceEEEEeccCcc---
Confidence                                             1224567899999999986 456899999999999999764210   


Q ss_pred             eccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeee
Q 007283          362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVV  441 (609)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (609)
                                                                                                    ..
T Consensus       117 ------------------------------------------------------------------------------~q  118 (311)
T KOG0315|consen  117 ------------------------------------------------------------------------------CQ  118 (311)
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          00


Q ss_pred             EEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283          442 STINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV  521 (609)
Q Consensus       442 ~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~  521 (609)
                      +.+.+..+|+++.++|+...|++|.++|.|++||+..+.+..+. ...-..+|.++...|||++++.+..-|++++|++.
T Consensus       119 R~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~l-iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~  197 (311)
T KOG0315|consen  119 RNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHEL-IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLL  197 (311)
T ss_pred             hhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCcccccc-CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEcc
Confidence            11122357899999999999999999999999999877554332 23345689999999999999999999999999976


Q ss_pred             CCce-----EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEE
Q 007283          522 SREV-----KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSS  595 (609)
Q Consensus       522 ~~~~-----~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~  595 (609)
                      +...     ++..+..|+.-|+.+.+|||+++||++|.|.+++||+.+.. ......+.+|.+++|.++|| |+++|+|+
T Consensus       198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvTa  276 (311)
T KOG0315|consen  198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVTA  276 (311)
T ss_pred             CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEec
Confidence            6432     23346689999999999999999999999999999998864 23344567899999999999 99999999


Q ss_pred             eCCCcEEEEEcc
Q 007283          596 GEDACVRVWRLT  607 (609)
Q Consensus       596 s~D~~i~~W~~~  607 (609)
                      |.|+.+++|++.
T Consensus       277 ssd~~~rlW~~~  288 (311)
T KOG0315|consen  277 SSDHTARLWDLS  288 (311)
T ss_pred             CCCCceeecccc
Confidence            999999999985

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5e-37  Score=261.36  Aligned_cols=298  Identities=18%  Similarity=0.252  Sum_probs=234.7

Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccc
Q 007283          156 SRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS  235 (609)
Q Consensus       156 ~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  235 (609)
                      +.+.+++++|+|++|++|...++.+.+++......|+.+.++||+++||+|+ ...|++||+.+++.-- +....+|+..
T Consensus         8 d~~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~P-v~t~e~h~kN   85 (311)
T KOG0315|consen    8 DDPVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNP-VATFEGHTKN   85 (311)
T ss_pred             CCceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCc-eeEEeccCCc
Confidence            3456799999999999999999999999987788999999999999888665 5679999999877532 1123589999


Q ss_pred             eEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCC
Q 007283          236 VYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEK  315 (609)
Q Consensus       236 V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~  315 (609)
                      |+++.|..||+++++||.||++||||++...   .                                             
T Consensus        86 VtaVgF~~dgrWMyTgseDgt~kIWdlR~~~---~---------------------------------------------  117 (311)
T KOG0315|consen   86 VTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS---C---------------------------------------------  117 (311)
T ss_pred             eEEEEEeecCeEEEecCCCceEEEEeccCcc---c---------------------------------------------
Confidence            9999999999999999999999999987310   0                                             


Q ss_pred             CceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEecc
Q 007283          316 SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQ  395 (609)
Q Consensus       316 ~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  395 (609)
                        .....|...|.++..++.+ ..+++|..+|.|++||+..........                               
T Consensus       118 --qR~~~~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~li-------------------------------  163 (311)
T KOG0315|consen  118 --QRNYQHNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELI-------------------------------  163 (311)
T ss_pred             --chhccCCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccC-------------------------------
Confidence              0011255677788777544 468899999999999875432111000                               


Q ss_pred             CCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEE
Q 007283          396 GDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYS  475 (609)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~  475 (609)
                                            ++                          ...++.++++.|||..++++...|+.++|+
T Consensus       164 ----------------------Pe--------------------------~~~~i~sl~v~~dgsml~a~nnkG~cyvW~  195 (311)
T KOG0315|consen  164 ----------------------PE--------------------------DDTSIQSLTVMPDGSMLAAANNKGNCYVWR  195 (311)
T ss_pred             ----------------------CC--------------------------CCcceeeEEEcCCCcEEEEecCCccEEEEE
Confidence                                  00                          002477889999999999999999999999


Q ss_pred             ecCCe----eeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEE
Q 007283          476 IRGDT----LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVAT  551 (609)
Q Consensus       476 ~~~~~----~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s  551 (609)
                      +..+.    +.....++.|.+-|...-+|||+++||++|.|.+++||+..+--..-+.+.+|+..++.++||.|++||+|
T Consensus       196 l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvT  275 (311)
T KOG0315|consen  196 LLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVT  275 (311)
T ss_pred             ccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEe
Confidence            86543    33445678999999999999999999999999999999987762222346789999999999999999999


Q ss_pred             EeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc
Q 007283          552 GSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT  587 (609)
Q Consensus       552 ~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s  587 (609)
                      |+.|+++++|++...+  ......||...-.|++..
T Consensus       276 assd~~~rlW~~~~~k--~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  276 ASSDHTARLWDLSAGK--EVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             cCCCCceeecccccCc--eeeecCCcccccEEEEee
Confidence            9999999999998643  344456777766666643

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.5e-36  Score=260.67  Aligned_cols=291  Identities=26%  Similarity=0.365  Sum_probs=232.6

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC-----CCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG-----PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~-----~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      ..++++|.+.|..++..+.++..+++++.|.++.+|+.     ..+...+.+.||.-.|+.+..++||++.++++.|+++
T Consensus         8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~l   87 (315)
T KOG0279|consen    8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTL   87 (315)
T ss_pred             eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceE
Confidence            35689999999999999998888999999999999964     3456677899999999999999999999999999999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      ++||..+++...++   .||...|.+++|+||.+.+++||.|++|++|++..    ..+-+...                
T Consensus        88 rlWDl~~g~~t~~f---~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g----~ck~t~~~----------------  144 (315)
T KOG0279|consen   88 RLWDLATGESTRRF---VGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG----VCKYTIHE----------------  144 (315)
T ss_pred             EEEEecCCcEEEEE---EecCCceEEEEecCCCceeecCCCcceeeeeeecc----cEEEEEec----------------
Confidence            99999999877666   48999999999999999999999999999999641    11100000                


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283          293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC  372 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~  372 (609)
                                                  .+|.                                                
T Consensus       145 ----------------------------~~~~------------------------------------------------  148 (315)
T KOG0279|consen  145 ----------------------------DSHR------------------------------------------------  148 (315)
T ss_pred             ----------------------------CCCc------------------------------------------------
Confidence                                        0001                                                


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeE
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTA  452 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (609)
                                                                                                 ..|+|
T Consensus       149 ---------------------------------------------------------------------------~WVsc  153 (315)
T KOG0279|consen  149 ---------------------------------------------------------------------------EWVSC  153 (315)
T ss_pred             ---------------------------------------------------------------------------CcEEE
Confidence                                                                                       13566


Q ss_pred             EEEcCC--CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q 007283          453 SAIAPD--GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM  530 (609)
Q Consensus       453 ~~~sp~--g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  530 (609)
                      +.|+|+  ..++++++.|++|++||+++-++  ...+.+|.+.++.+++||||.++++|+.|+.+.+||+..++..  ..
T Consensus       154 vrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l--ys  229 (315)
T KOG0279|consen  154 VRFSPNESNPIIVSASWDKTVKVWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL--YS  229 (315)
T ss_pred             EEEcCCCCCcEEEEccCCceEEEEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee--Ee
Confidence            677776  56788888999999998875544  4567899999999999999999999999999999999877653  34


Q ss_pred             cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCc---ceeEec----cccCCeEEEEEc-CCCeEEEEeCCCcEE
Q 007283          531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASS---RMTIKG----AHLGGVYGLAFT-DEHSVVSSGEDACVR  602 (609)
Q Consensus       531 ~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~---~~~~~~----~h~~~v~~~~~s-~~~~l~s~s~D~~i~  602 (609)
                      ..|...|.+++|+|+-.+|+.+ .+..|+|||++.+...   .+...+    +-...-.+++|| |+..|+++=.|+.|+
T Consensus       230 l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ir  308 (315)
T KOG0279|consen  230 LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIR  308 (315)
T ss_pred             ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence            6799999999999987777544 5666999999764310   011111    112234578899 899999999999999


Q ss_pred             EEEcc
Q 007283          603 VWRLT  607 (609)
Q Consensus       603 ~W~~~  607 (609)
                      +|.+.
T Consensus       309 v~qv~  313 (315)
T KOG0279|consen  309 VWQVA  313 (315)
T ss_pred             EEEee
Confidence            99875

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=2.7e-35  Score=264.36  Aligned_cols=336  Identities=19%  Similarity=0.262  Sum_probs=256.9

Q ss_pred             cCcCceeEEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283           14 TERGRGILISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~   92 (609)
                      .|....++++.||+.++.++.++ ....||++.++.....+.+|++.|+++.||.||.|||||+.+|.|+||+..++.. 
T Consensus        62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~-  140 (399)
T KOG0296|consen   62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGE-  140 (399)
T ss_pred             hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCce-
Confidence            56778999999996665555544 7999999999999888999999999999999999999999999999999988653 


Q ss_pred             eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      +..+..--.                                             .+.-+.|||... +++.|+.|+.+-+
T Consensus       141 ~~~~~~e~~---------------------------------------------dieWl~WHp~a~-illAG~~DGsvWm  174 (399)
T KOG0296|consen  141 QWKLDQEVE---------------------------------------------DIEWLKWHPRAH-ILLAGSTDGSVWM  174 (399)
T ss_pred             EEEeecccC---------------------------------------------ceEEEEeccccc-EEEeecCCCcEEE
Confidence            222211111                                             233355666554 4778888888888


Q ss_pred             EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       173 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      |.++.....+.+.||..+++|-.|.|||++++++..|++|++|+.+++..+..+....  ...-+++.++..+..++.|+
T Consensus       175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e--~~~~~~~~~~~~~~~~~~g~  252 (399)
T KOG0296|consen  175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE--GLELPCISLNLAGSTLTKGN  252 (399)
T ss_pred             EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc--cCcCCccccccccceeEecc
Confidence            9888877788899999999999999999999999999999999999999888775322  34577889999999999999


Q ss_pred             CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283          253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV  332 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~  332 (609)
                      .++.+++-+..   .++++.....                                      ..+.....+...+-+   
T Consensus       253 ~e~~~~~~~~~---sgKVv~~~n~--------------------------------------~~~~l~~~~e~~~es---  288 (399)
T KOG0296|consen  253 SEGVACGVNNG---SGKVVNCNNG--------------------------------------TVPELKPSQEELDES---  288 (399)
T ss_pred             CCccEEEEccc---cceEEEecCC--------------------------------------CCccccccchhhhhh---
Confidence            99988877543   2222211100                                      000000000000000   


Q ss_pred             ecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCc
Q 007283          333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPK  412 (609)
Q Consensus       333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  412 (609)
                                                                                                      
T Consensus       289 --------------------------------------------------------------------------------  288 (399)
T KOG0296|consen  289 --------------------------------------------------------------------------------  288 (399)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCC
Q 007283          413 DLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG  492 (609)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~  492 (609)
                                                           +..+.++..=.++|+|+-||+|.|||+....++  . .-.|..
T Consensus       289 -------------------------------------ve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R--~-~c~he~  328 (399)
T KOG0296|consen  289 -------------------------------------VESIPSSSKLPLAACGSVDGTIAIYDLAASTLR--H-ICEHED  328 (399)
T ss_pred             -------------------------------------hhhcccccccchhhcccccceEEEEecccchhh--e-eccCCC
Confidence                                                 111112222345788999999999999766543  2 345888


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       493 ~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      +|..+.|-+ ..++++++.||.|+.||.++++.+. .+.+|+..|.+++++|+.++++|+|.|++.+||+++
T Consensus       329 ~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~-~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~  398 (399)
T KOG0296|consen  329 GVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKF-TYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP  398 (399)
T ss_pred             ceEEEEEcC-cchheeeccCceEEeeeccccceEE-EEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence            999999988 8899999999999999999887654 578999999999999999999999999999999874

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=9.7e-33  Score=272.53  Aligned_cols=549  Identities=14%  Similarity=0.174  Sum_probs=372.5

Q ss_pred             eEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEEC
Q 007283           30 SILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWS  109 (609)
Q Consensus        30 ~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~s  109 (609)
                      ++.++.|+...+||..+-..+..-..+.+.|.|++-+.+--|.|++   ..|-+|..  ++.....+..|...|.-+.  
T Consensus        49 ~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g---~~i~~~~r--gk~i~~~~~~~~a~v~~l~--  121 (910)
T KOG1539|consen   49 YVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASG---NKIYAYAR--GKHIRHTTLLHGAKVHLLL--  121 (910)
T ss_pred             EEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecC---cEEEEEEc--cceEEEEeccccceEEEEe--
Confidence            4556789999999998877766556788889998876655555544   34666643  3333444445554444332  


Q ss_pred             CCCCEEEEEECCCCcceEEEEEcCCC-Ce----eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec
Q 007283          110 PDGLRIVACGDGKGKSLVRAFMWDSG-TN----VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH  184 (609)
Q Consensus       110 pdg~~l~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~  184 (609)
                      |=|.+++++....   .+.+|.-... ..    +..++...+.|+++.-.++--..++.|+.+|.+++|+..+++.+.++
T Consensus       122 ~fGe~lia~d~~~---~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f  198 (910)
T KOG1539|consen  122 PFGEHLIAVDISN---ILFVWKTSSIQEELYLQSTFLKVEGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTF  198 (910)
T ss_pred             eecceEEEEEccC---cEEEEEeccccccccccceeeeccCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEe
Confidence            3356777765433   2333333331 11    11223333346666433333335899999999999999999999999


Q ss_pred             cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCC-ccceEEEEECCCCCe-EEEEeCCCcEEEeec
Q 007283          185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGH-KGSVYAVSWSPDGKQ-VLTASADKSAKVWDI  262 (609)
Q Consensus       185 ~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~-l~s~s~d~~i~iwd~  262 (609)
                      +++...|+++.=+|--..+|.|..+|+|.|++.+.++.+..+.    | .+.|++++|..||.. +++++..|.+.+||+
T Consensus       199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk----~d~g~VtslSFrtDG~p~las~~~~G~m~~wDL  274 (910)
T KOG1539|consen  199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFK----QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDL  274 (910)
T ss_pred             cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEE----ccccceeEEEeccCCCeeEEeccCCceEEEEEc
Confidence            9999999999999998899999999999999999999998874    5 489999999999985 556666699999999


Q ss_pred             ccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCcee---eeCCCCCeEEEEEecCCCCE
Q 007283          263 SEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQ---LSGHMKNVTALTVLNIDPKV  339 (609)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~  339 (609)
                      +.   .++.......+.+++..  ..++.....+++++.|+.+++|-.+.....+..   -.||..+..++.|...++..
T Consensus       275 e~---kkl~~v~~nah~~sv~~--~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~  349 (910)
T KOG1539|consen  275 EK---KKLINVTRNAHYGSVTG--ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHF  349 (910)
T ss_pred             CC---CeeeeeeeccccCCccc--ceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEE
Confidence            74   34444443333222221  234445668889999999999987755443333   36899999999999888899


Q ss_pred             EEEEecCCcEEEEecCcccc----ce---ecc-----------ccccceeEeeeeC------CcEEEEec-cceEEEEec
Q 007283          340 ILSSSYDGLIVKWIQGIGYG----GK---LQR-----------KENSQIKCFAAIE------EEIVTSGF-DNKIWRVSL  394 (609)
Q Consensus       340 ~~t~s~dg~i~~W~~~~~~~----~~---~~~-----------~~~~~~~~~~~~~------~~~~~~~~-d~~i~~~~~  394 (609)
                      +.+++.|++.+.+.......    ..   ...           ..-.++..++...      +.+++... +...+.|++
T Consensus       350 ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~  429 (910)
T KOG1539|consen  350 ILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNF  429 (910)
T ss_pred             EEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEec
Confidence            99999999998885432110    00   000           0112333444321      22444443 345777877


Q ss_pred             cCCcccc--cccc---ccCCCCceeEeeccCCcEEEEEeccc-EEEe--eCCeeeEEe----ccCCceeEEEEcCCCCEE
Q 007283          395 QGDQCGY--ANSI---DIGSQPKDLSVALHYPELVLVSTDSG-VVLL--RGAEVVSTI----NLRFPVTASAIAPDGSEA  462 (609)
Q Consensus       395 ~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~----~~~~~~~~~~~sp~g~~l  462 (609)
                      ++...|.  ....   ........+++.. .+.+.+.+...| +-.+  +.+-....+    .++.+|+.+++..-++.+
T Consensus       430 ~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~  508 (910)
T KOG1539|consen  430 RNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLL  508 (910)
T ss_pred             cCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceE
Confidence            6654321  0000   0111122223222 334555544444 3332  223233333    466889999999999999


Q ss_pred             EEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEE
Q 007283          463 IIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW  542 (609)
Q Consensus       463 ~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~  542 (609)
                      ++++.||.+++|+.....+..  .+ .-...+.++.++.....+|.+..|-.|+++|..+... ...+.+|..+|++++|
T Consensus       509 vsa~~~Gilkfw~f~~k~l~~--~l-~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kv-vR~f~gh~nritd~~F  584 (910)
T KOG1539|consen  509 VSAGADGILKFWDFKKKVLKK--SL-RLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKV-VREFWGHGNRITDMTF  584 (910)
T ss_pred             EEccCcceEEEEecCCcceee--ee-ccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhh-hHHhhccccceeeeEe
Confidence            999999999999997665422  11 2345788889999999999999999999999877654 3457789999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCC-CcEEEEE
Q 007283          543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGED-ACVRVWR  605 (609)
Q Consensus       543 s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D-~~i~~W~  605 (609)
                      ||||+||++++.|++|++||+.++.  .+.... -.....++.|| .+.+|+|+..| .-|.+|.
T Consensus       585 S~DgrWlisasmD~tIr~wDlpt~~--lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  585 SPDGRWLISASMDSTIRTWDLPTGT--LIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCCCcEEEEeecCCcEEEEeccCcc--eeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEE
Confidence            9999999999999999999998754  222111 23457899999 67999999988 7789994

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.2e-35  Score=266.53  Aligned_cols=308  Identities=23%  Similarity=0.350  Sum_probs=252.1

Q ss_pred             CCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcc
Q 007283           46 NPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS  125 (609)
Q Consensus        46 ~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~  125 (609)
                      .+...+.+.+|+..|+.+-|+|+-.+.|+++.|++|++||..+++++ +                               
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e-~-------------------------------  144 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE-R-------------------------------  144 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh-h-------------------------------
Confidence            33455567899999999999999999999999999999999987642 1                               


Q ss_pred             eEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-CceeeeccCcccceEEEEEcCCCCEEE
Q 007283          126 LVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFKLSHRGHSNFVNCVRFSPDGSKFI  204 (609)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~  204 (609)
                                    .++||.+.|.+++|+..|. .+++|+.|-.+++||.+. .++.....||.-.|.++.|-|.|.+|+
T Consensus       145 --------------~LrGHt~sv~di~~~a~Gk-~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~il  209 (406)
T KOG0295|consen  145 --------------SLRGHTDSVFDISFDASGK-YLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHIL  209 (406)
T ss_pred             --------------hhhccccceeEEEEecCcc-EEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeee
Confidence                          2557777778888887775 489999998899999776 567777889999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283          205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD  284 (609)
Q Consensus       205 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  284 (609)
                      +++.|.+|+.|+..++.++.++.   +|+..|..++.+.||..+++++.|.++++|-+...   ..+             
T Consensus       210 S~srD~tik~We~~tg~cv~t~~---~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~---~~k-------------  270 (406)
T KOG0295|consen  210 SCSRDNTIKAWECDTGYCVKTFP---GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK---QCK-------------  270 (406)
T ss_pred             ecccccceeEEecccceeEEecc---CchHhEEEEEecCCeeEEEecCCCceEEEEEeccc---hhh-------------
Confidence            99999999999999999998874   89999999999999999999999999999976521   111             


Q ss_pred             eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc
Q 007283          285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR  364 (609)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~  364 (609)
                                                       ..+.+|...|-++++.+...   ++.                     
T Consensus       271 ---------------------------------~~lR~hEh~vEci~wap~~~---~~~---------------------  293 (406)
T KOG0295|consen  271 ---------------------------------AELREHEHPVECIAWAPESS---YPS---------------------  293 (406)
T ss_pred             ---------------------------------hhhhccccceEEEEeccccc---Ccc---------------------
Confidence                                             22445666676666542200   000                     


Q ss_pred             ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe
Q 007283          365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI  444 (609)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (609)
                           +.                                  +                   .          +       
T Consensus       294 -----i~----------------------------------~-------------------a----------t-------  298 (406)
T KOG0295|consen  294 -----IS----------------------------------E-------------------A----------T-------  298 (406)
T ss_pred             -----hh----------------------------------h-------------------c----------c-------
Confidence                 00                                  0                   0          0       


Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc
Q 007283          445 NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE  524 (609)
Q Consensus       445 ~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~  524 (609)
                          +-     .-.++++.+|+.|++|++||+..+.+  ..++.+|...|..++|+|.|+|++|+..|+++++||+.+.+
T Consensus       299 ----~~-----~~~~~~l~s~SrDktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~  367 (406)
T KOG0295|consen  299 ----GS-----TNGGQVLGSGSRDKTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQ  367 (406)
T ss_pred             ----CC-----CCCccEEEeecccceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccce
Confidence                00     00367899999999999999998865  57889999999999999999999999999999999987765


Q ss_pred             eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          525 VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       525 ~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      . .+.+..|..-|++++|..+..+++||+.|.++++|..
T Consensus       368 c-mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  368 C-MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             e-eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence            4 5567789999999999999999999999999999963

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-34  Score=250.36  Aligned_cols=283  Identities=21%  Similarity=0.323  Sum_probs=228.6

Q ss_pred             cCcCceeEEeecCCCCeEEEeC--CCEEEEEeCCCC-----ccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcC
Q 007283           14 TERGRGILISGHPKSNSILYTN--GRSVIILDLSNP-----LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA   86 (609)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~-----~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~   86 (609)
                      .|.+-++.++-.+++.-++++.  +.++++|++...     ..++.|.||+..|+.++.++||++.+|++.|+++|+||+
T Consensus        13 gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl   92 (315)
T KOG0279|consen   13 GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL   92 (315)
T ss_pred             CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence            4566677777777755455553  578999998543     346678999999999999999999999999999999999


Q ss_pred             CCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCeeEEEecC--CccEEEEEEeeCC-CeEEE
Q 007283           87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTNVGEFDGH--SRRVLSCAFKPSR-PFRIA  162 (609)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h--~~~v~~~~~~p~~-~~~i~  162 (609)
                      .+++ ..+.|.+|...|.+++|+||.+++++.+-++   .  +..|+. +.+..++..+  ++-|.++.|+|+. ..+|+
T Consensus        93 ~~g~-~t~~f~GH~~dVlsva~s~dn~qivSGSrDk---T--iklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv  166 (315)
T KOG0279|consen   93 ATGE-STRRFVGHTKDVLSVAFSTDNRQIVSGSRDK---T--IKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV  166 (315)
T ss_pred             cCCc-EEEEEEecCCceEEEEecCCCceeecCCCcc---e--eeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence            9875 4467999999999999999999999866444   3  445553 4566666554  6789999999984 45799


Q ss_pred             EecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEEC
Q 007283          163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS  242 (609)
Q Consensus       163 t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s  242 (609)
                      ++|.|+++++||..+.+....+.||..+++.+++||||.+.++|+.||.+.+||...++.+..+    +|...|.+++|+
T Consensus       167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl----~a~~~v~sl~fs  242 (315)
T KOG0279|consen  167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL----EAFDIVNSLCFS  242 (315)
T ss_pred             EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec----cCCCeEeeEEec
Confidence            9999999999999999999999999999999999999999999999999999999999988776    588899999999


Q ss_pred             CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCC----ccceEEEEEEc--CCeEEEEEcCCcEEEEeC
Q 007283          243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG----VDDMLVGCLWQ--NDFLVIVSLGGTISIFSA  310 (609)
Q Consensus       243 pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~g~i~~~~~  310 (609)
                      |+...|+.+ .+..|+|||+..   +..+.++.....+.    -...+..+.|+  +..|+++..++.|++|.+
T Consensus       243 pnrywL~~a-t~~sIkIwdl~~---~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv  312 (315)
T KOG0279|consen  243 PNRYWLCAA-TATSIKIWDLES---KAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQV  312 (315)
T ss_pred             CCceeEeec-cCCceEEEeccc---hhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEe
Confidence            987766655 466799999873   44444444332221    12345566676  679999999999999974

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.3e-34  Score=245.65  Aligned_cols=291  Identities=24%  Similarity=0.413  Sum_probs=224.1

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC---CCceeeec-cCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP---PFKFKLSH-RGHSNFVNCVRFSPDGSKFISVSSDKKGI  213 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~---~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i~  213 (609)
                      ...+.+|.+++..++|+|....+||+||.|+.+++|+..   +..++..+ .+|++.|.+++|+|.|++|++|+.|.++.
T Consensus         7 ~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~   86 (312)
T KOG0645|consen    7 EQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVV   86 (312)
T ss_pred             EEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEE
Confidence            345789999999999999844479999999999999876   34454444 47999999999999999999999999999


Q ss_pred             EEeCCCC--ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE
Q 007283          214 IYDGKTA--DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW  291 (609)
Q Consensus       214 iwd~~~~--~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      ||.-..+  +++..   ..||...|.+++|+++|++||+++.|+.|-||.+.++...                   .   
T Consensus        87 Iw~k~~~efecv~~---lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEf-------------------e---  141 (312)
T KOG0645|consen   87 IWKKEDGEFECVAT---LEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEF-------------------E---  141 (312)
T ss_pred             EeecCCCceeEEee---eeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcE-------------------E---
Confidence            9975433  33333   3699999999999999999999999999999987532100                   0   


Q ss_pred             cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccccee
Q 007283          292 QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK  371 (609)
Q Consensus       292 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~  371 (609)
                                              ....+++|++.|..+.+++. ..+|+++|.|++|++|                   
T Consensus       142 ------------------------c~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk~~-------------------  177 (312)
T KOG0645|consen  142 ------------------------CIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIKVY-------------------  177 (312)
T ss_pred             ------------------------EEeeeccccccccEEEEcCC-cceeEEeccCCeEEEE-------------------
Confidence                                    01235567777777766643 2456666666666665                   


Q ss_pred             EeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCcee
Q 007283          372 CFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVT  451 (609)
Q Consensus       372 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (609)
                                                                                                      
T Consensus       178 --------------------------------------------------------------------------------  177 (312)
T KOG0645|consen  178 --------------------------------------------------------------------------------  177 (312)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEec-CCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q 007283          452 ASAIAPDGSEAIIGSQDGKLRVYSIR-GDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM  530 (609)
Q Consensus       452 ~~~~sp~g~~l~~gs~dg~i~iw~~~-~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  530 (609)
                                             +-. .+.....+++.+|...|.+++|+|.|..+++++.|++++||-....     ..
T Consensus       178 -----------------------~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~  229 (312)
T KOG0645|consen  178 -----------------------RDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS  229 (312)
T ss_pred             -----------------------eecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----cc
Confidence                                   322 2223335678889999999999999999999999999999974321     12


Q ss_pred             cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCC-C----cceeEeccccCCeEEEEEcC--CCeEEEEeCCCcEEE
Q 007283          531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA-S----SRMTIKGAHLGGVYGLAFTD--EHSVVSSGEDACVRV  603 (609)
Q Consensus       531 ~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~-~----~~~~~~~~h~~~v~~~~~s~--~~~l~s~s~D~~i~~  603 (609)
                      ..|+..+..++|-  +..|||++.|+.|++|...... .    .......+|...|++++|.+  .+.|+|+|.||.+++
T Consensus       230 ~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~  307 (312)
T KOG0645|consen  230 GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNF  307 (312)
T ss_pred             hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEE
Confidence            4588899999997  5679999999999999865311 0    11234568999999999996  578999999999999


Q ss_pred             EEcc
Q 007283          604 WRLT  607 (609)
Q Consensus       604 W~~~  607 (609)
                      |.+.
T Consensus       308 W~l~  311 (312)
T KOG0645|consen  308 WELE  311 (312)
T ss_pred             EEec
Confidence            9874

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.1e-32  Score=263.57  Aligned_cols=467  Identities=21%  Similarity=0.342  Sum_probs=312.0

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      +.+..|++.|.++.|+|.-.++.++--.|+|+||+.+++. +.+.+.....+|++..|-+-..++++.+|+.   .+|++
T Consensus         7 rk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqt-mVksfeV~~~PvRa~kfiaRknWiv~GsDD~---~IrVf   82 (794)
T KOG0276|consen    7 RKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQT-MVKSFEVSEVPVRAAKFIARKNWIVTGSDDM---QIRVF   82 (794)
T ss_pred             hHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccce-eeeeeeecccchhhheeeeccceEEEecCCc---eEEEE
Confidence            3455688999999999999999999999999999998864 4556777788999999999888999877654   58999


Q ss_pred             EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC-CCceeeeccCcccceEEEEEcCC-CCEEEEEeC
Q 007283          131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PFKFKLSHRGHSNFVNCVRFSPD-GSKFISVSS  208 (609)
Q Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~-~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~  208 (609)
                      .+.+...+.+|..|++.|.+++.||+.++ +.+++.|-+|++|+.+ .+.+.++|.||.-+|-+++|.|. .+.+|+++-
T Consensus        83 nynt~ekV~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   83 NYNTGEKVKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             ecccceeeEEeeccccceeeeeecCCCCe-EEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            99999999999999999999999999996 8899999999999965 46888999999999999999996 568999999


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC--CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG--KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML  286 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  286 (609)
                      |++|++|.........++   +||...|+++.+-|-|  .+|+||+.|.++++||..++                     
T Consensus       162 DrTVKVWslgs~~~nfTl---~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---------------------  217 (794)
T KOG0276|consen  162 DRTVKVWSLGSPHPNFTL---EGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---------------------  217 (794)
T ss_pred             cccEEEEEcCCCCCceee---eccccCcceEEeccCCCcceEEecCCCceEEEeecchH---------------------
Confidence            999999999888877777   4999999999998744  69999999999999998521                     


Q ss_pred             EEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283          287 VGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE  366 (609)
Q Consensus       287 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~  366 (609)
                                                  ....++.||..+|..+.|++.- .+++|||.||++|+|...+-.......-.
T Consensus       218 ----------------------------~CV~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tLn~g  268 (794)
T KOG0276|consen  218 ----------------------------SCVQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTLNYG  268 (794)
T ss_pred             ----------------------------HHHHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehhhhhhcC
Confidence                                        1124577899999999998654 48999999999999976543322222122


Q ss_pred             ccceeEeeee-CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecc-c-EEEeeCCeeeEE
Q 007283          367 NSQIKCFAAI-EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDS-G-VVLLRGAEVVST  443 (609)
Q Consensus       367 ~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~  443 (609)
                      -+++.|++.. +...+..++|+....+.+......    ...... ..+..+.+. ++....... + ..-+..++.+..
T Consensus       269 leRvW~I~~~k~~~~i~vG~Deg~i~v~lgreeP~----vsMd~~-gKIiwa~~~-ei~~~~~ks~~~~~ev~DgErL~L  342 (794)
T KOG0276|consen  269 LERVWCIAAHKGDGKIAVGFDEGSVTVKLGREEPA----VSMDSN-GKIIWAVHS-EIQAVNLKSVGAQKEVTDGERLPL  342 (794)
T ss_pred             CceEEEEeecCCCCeEEEeccCCcEEEEccCCCCc----eeecCC-ccEEEEcCc-eeeeeeceeccCcccccCCccccc
Confidence            3456777652 333455555555444433222100    000000 001111110 000000000 0 000011111100


Q ss_pred             ----e-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEE
Q 007283          444 ----I-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW  518 (609)
Q Consensus       444 ----~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iw  518 (609)
                          + .+..-...++.+|+|+++++| .||.-.||.--  .+     -..+.|.-....|++|...+|+--.++.++++
T Consensus       343 svKeLgs~eiyPq~L~hsPNGrfV~Vc-gdGEyiIyTal--a~-----RnK~fG~~~eFvw~~dsne~avRes~~~vki~  414 (794)
T KOG0276|consen  343 SVKELGSVEIYPQTLAHSPNGRFVVVC-GDGEYIIYTAL--AL-----RNKAFGSGLEFVWAADSNEFAVRESNGNVKIF  414 (794)
T ss_pred             hhhhccccccchHHhccCCCCcEEEEe-cCccEEEEEee--eh-----hhcccccceeEEEcCCCCeEEEEecCCceEEE
Confidence                0 011223457889999977776 58988888532  11     12344555667789998888888788888888


Q ss_pred             EccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCc-ceeEeccccCCeEEEEEcCCCeEEEEeC
Q 007283          519 DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASS-RMTIKGAHLGGVYGLAFTDEHSVVSSGE  597 (609)
Q Consensus       519 d~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~-~~~~~~~h~~~v~~~~~s~~~~l~s~s~  597 (609)
                      -  +.+. .+.+   .....+..+. .|.+|..-+ ++.+.+||-+..... ++.+      ....+.|+|+..|+..+.
T Consensus       415 k--nfke-~ksi---~~~~~~e~i~-gg~Llg~~s-s~~~~fydW~~~~lVrrI~v------~~k~v~w~d~g~lVai~~  480 (794)
T KOG0276|consen  415 K--NFKE-HKSI---RPDMSAEGIF-GGPLLGVRS-SDFLCFYDWESGELVRRIEV------TSKHVYWSDNGELVAIAG  480 (794)
T ss_pred             e--ccee-cccc---ccccceeeec-CCceEEEEe-CCeEEEEEcccceEEEEEee------ccceeEEecCCCEEEEEe
Confidence            2  2211 1111   1111122222 355555544 456899987653211 1111      125688896544554444


Q ss_pred             CCcEEE
Q 007283          598 DACVRV  603 (609)
Q Consensus       598 D~~i~~  603 (609)
                      |-+-.+
T Consensus       481 d~Sfyi  486 (794)
T KOG0276|consen  481 DDSFYI  486 (794)
T ss_pred             cCceeE
Confidence            445333

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.6e-33  Score=260.83  Aligned_cols=326  Identities=24%  Similarity=0.363  Sum_probs=252.0

Q ss_pred             EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC--Cceee--ec------cC----cccceEEEEEcCCCCEEEEE
Q 007283          141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP--FKFKL--SH------RG----HSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~--~~~~~--~~------~~----h~~~v~~l~~s~dg~~l~s~  206 (609)
                      ...|..+|..++|.|-..-.+++|+.|...++|+...  .....  .+      .+    ....|++|+|+.+|..||+|
T Consensus       174 vl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG  253 (524)
T KOG0273|consen  174 VLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATG  253 (524)
T ss_pred             eccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEe
Confidence            3349999999999998776799999999999998653  11111  11      11    23679999999999999999


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML  286 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  286 (609)
                      +.||.++||+ ..+..+.++.   .|+++|.++.|..+|.||++++.|+++.+||...   +...+.+.           
T Consensus       254 ~~~G~~riw~-~~G~l~~tl~---~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~---g~~~q~f~-----------  315 (524)
T KOG0273|consen  254 SEDGEARIWN-KDGNLISTLG---QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHT---GTVKQQFE-----------  315 (524)
T ss_pred             ecCcEEEEEe-cCchhhhhhh---ccCCceEEEEEcCCCCEEEeccCCccEEEEeccC---ceEEEeee-----------
Confidence            9999999998 4566676664   6999999999999999999999999999999752   33333222           


Q ss_pred             EEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283          287 VGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE  366 (609)
Q Consensus       287 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~  366 (609)
                                                         .|...-..+.|-+.  ..+++++.|+.|++..++..         
T Consensus       316 -----------------------------------~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~---------  349 (524)
T KOG0273|consen  316 -----------------------------------FHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGED---------  349 (524)
T ss_pred             -----------------------------------eccCCccceEEecC--ceEeecCCCceEEEEEecCC---------
Confidence                                               23222223444332  56889999999888743211         


Q ss_pred             ccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEecc
Q 007283          367 NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINL  446 (609)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (609)
                       .++                                                                      .....|
T Consensus       350 -~P~----------------------------------------------------------------------~t~~GH  358 (524)
T KOG0273|consen  350 -RPV----------------------------------------------------------------------KTFIGH  358 (524)
T ss_pred             -Ccc----------------------------------------------------------------------eeeecc
Confidence             000                                                                      011123


Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC---------CEEEEEeCCCeEEE
Q 007283          447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV---------SMFASGDVNREAIV  517 (609)
Q Consensus       447 ~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~---------~~l~s~s~d~~v~i  517 (609)
                      ..+|.++.+.|.|.+|+++|.|++++||++.....  ..-+.+|...|..+.|||.|         ..+++++.|.+|++
T Consensus       359 ~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~l  436 (524)
T KOG0273|consen  359 HGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKL  436 (524)
T ss_pred             cCceEEEEECCCCceEEEecCCCeeEeeecCCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEE
Confidence            45789999999999999999999999999765443  34578899999999999986         47999999999999


Q ss_pred             EEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEe
Q 007283          518 WDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSG  596 (609)
Q Consensus       518 wd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s  596 (609)
                      ||+..+... ..+..|+.+|.+|+|||+|+++|+|+.||.|.+|+..+.+  +.... .-.+.|..|.|+ ++++|..+-
T Consensus       437 wdv~~gv~i-~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~--l~~s~-~~~~~Ifel~Wn~~G~kl~~~~  512 (524)
T KOG0273|consen  437 WDVESGVPI-HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGK--LVKSY-QGTGGIFELCWNAAGDKLGACA  512 (524)
T ss_pred             EEccCCcee-EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchh--eeEee-cCCCeEEEEEEcCCCCEEEEEe
Confidence            999877654 3467899999999999999999999999999999987643  22222 345679999999 888898888


Q ss_pred             CCCcEEEEEcc
Q 007283          597 EDACVRVWRLT  607 (609)
Q Consensus       597 ~D~~i~~W~~~  607 (609)
                      .|+.+++-++.
T Consensus       513 sd~~vcvldlr  523 (524)
T KOG0273|consen  513 SDGSVCVLDLR  523 (524)
T ss_pred             cCCCceEEEec
Confidence            99999998763

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=9.1e-34  Score=244.67  Aligned_cols=286  Identities=21%  Similarity=0.360  Sum_probs=226.6

Q ss_pred             cccccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc--eeeEEE-eecccceeEEEECCCCCEEEEEECCCCcce
Q 007283           51 SIYGEHAYPATVARFSPN-GEWIASADVSGTVRIWGAHNDH--VLKKEF-RVLSGRIDDLQWSPDGLRIVACGDGKGKSL  126 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~-g~~las~~~d~~i~vWd~~~~~--~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~  126 (609)
                      +.+.+|++.+..++++|- |.+|||++.|++||||+...+.  .++..+ .+|...|+.++|+|.|++|++.+-+..   
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t---   84 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT---   84 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce---
Confidence            557899999999999998 9999999999999999987422  233333 357889999999999998888775432   


Q ss_pred             EEEEEcCCC----CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC---CCceeeeccCcccceEEEEEcCC
Q 007283          127 VRAFMWDSG----TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP---PFKFKLSHRGHSNFVNCVRFSPD  199 (609)
Q Consensus       127 ~~~~~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~---~~~~~~~~~~h~~~v~~l~~s~d  199 (609)
                        .-+|...    .++..+.||..+|.+++|+++|.+ +|+|++|..+=+|+..   .+.+...+.+|.+.|..+.|+|.
T Consensus        85 --~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~-LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   85 --VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNY-LATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             --EEEeecCCCceeEEeeeeccccceeEEEEcCCCCE-EEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence              3455544    678889999999999999999985 9999999999999753   56778889999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCC
Q 007283          200 GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS  279 (609)
Q Consensus       200 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  279 (609)
                      ..+|++++.|.+|++|....+..........+|.+.|.+++|+|.|..|++++.|++++||-....-.+.          
T Consensus       162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~~~----------  231 (312)
T KOG0645|consen  162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLSGM----------  231 (312)
T ss_pred             cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcchh----------
Confidence            8999999999999999766333222222235899999999999999999999999999999743111110          


Q ss_pred             CCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCC-CCCc-----eeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEe
Q 007283          280 GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL-EKSP-----LQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI  353 (609)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~-~~~~-----~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~  353 (609)
                        ....+....|.+..+++++.|+.|++|.-... ..+.     ..-..|...|.++.+.+..++++++|+.||.|++|.
T Consensus       232 --~sr~~Y~v~W~~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  232 --HSRALYDVPWDNGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             --cccceEeeeecccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence              11123345567889999999999999975432 1111     123569999999999875568999999999999995


Q ss_pred             c
Q 007283          354 Q  354 (609)
Q Consensus       354 ~  354 (609)
                      +
T Consensus       310 l  310 (312)
T KOG0645|consen  310 L  310 (312)
T ss_pred             e
Confidence            4

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=252.81  Aligned_cols=333  Identities=20%  Similarity=0.302  Sum_probs=260.0

Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      .+..|.+|.+.|.+++.+|+.+ .+||||.|..-++|+..++.....+.+|+..|+|+.|+.||.+||||.-+|.++||.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEE
Confidence            4567899999999999999665 599999999999999999998899999999999999999999999999999999999


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL  296 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (609)
                      ..++.....+-   ...+.+.-+.|||.+..|+.|+.||.+.+|.+...   ..                          
T Consensus       135 ~stg~~~~~~~---~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~---~~--------------------------  182 (399)
T KOG0296|consen  135 VSTGGEQWKLD---QEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQ---AL--------------------------  182 (399)
T ss_pred             cccCceEEEee---cccCceEEEEecccccEEEeecCCCcEEEEECCCc---ce--------------------------
Confidence            99988766552   34567889999999999999999999999987521   11                          


Q ss_pred             EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283          297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI  376 (609)
Q Consensus       297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~  376 (609)
                                          .+.+.||..++++-.|.+ +++.++++..||+|++|++.++.......            
T Consensus       183 --------------------~kv~~Gh~~~ct~G~f~p-dGKr~~tgy~dgti~~Wn~ktg~p~~~~~------------  229 (399)
T KOG0296|consen  183 --------------------CKVMSGHNSPCTCGEFIP-DGKRILTGYDDGTIIVWNPKTGQPLHKIT------------  229 (399)
T ss_pred             --------------------eeEecCCCCCcccccccC-CCceEEEEecCceEEEEecCCCceeEEec------------
Confidence                                134567888888888775 47899999999999999876542110000            


Q ss_pred             CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                             +.                                                     +       +.+..+++++
T Consensus       230 -------~~-----------------------------------------------------e-------~~~~~~~~~~  242 (399)
T KOG0296|consen  230 -------QA-----------------------------------------------------E-------GLELPCISLN  242 (399)
T ss_pred             -------cc-----------------------------------------------------c-------cCcCCccccc
Confidence                   00                                                     0       0123445556


Q ss_pred             CCCCEEEEEeCCCcEEEEEecCCeeeeeE------EEecCCCc---eEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE
Q 007283          457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEA------VLEKHRGA---VSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL  527 (609)
Q Consensus       457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~------~~~~h~~~---i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~  527 (609)
                      .++..++.|+.++.+++-+..+++.....      ....+...   |.++.+|..-.+.|.|+.||++.|||+.....+ 
T Consensus       243 ~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R-  321 (399)
T KOG0296|consen  243 LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR-  321 (399)
T ss_pred             cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh-
Confidence            66666777777777766665544422100      11133444   445555666789999999999999998765543 


Q ss_pred             eeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       528 ~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                       ....|...|+.+.|-+ ..+|++++.||.|+.||..++  .+...+.||...|.+++.+ +.+.++|+|.|++.+++.+
T Consensus       322 -~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG--~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  322 -HICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTG--QLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEV  397 (399)
T ss_pred             -eeccCCCceEEEEEcC-cchheeeccCceEEeeecccc--ceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEec
Confidence             3457999999999998 788999999999999998875  4567788999999999999 7789999999999999987


Q ss_pred             c
Q 007283          607 T  607 (609)
Q Consensus       607 ~  607 (609)
                      .
T Consensus       398 ~  398 (399)
T KOG0296|consen  398 P  398 (399)
T ss_pred             C
Confidence            4

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.6e-34  Score=257.81  Aligned_cols=290  Identities=27%  Similarity=0.379  Sum_probs=242.3

Q ss_pred             ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283          179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK  258 (609)
Q Consensus       179 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~  258 (609)
                      .....+.||..+|+.+.|+|+-...++++.|.+|++||..+++....+   +||...|..++|+..|++|++++.|-.++
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~L---rGHt~sv~di~~~a~Gk~l~tcSsDl~~~  175 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSL---RGHTDSVFDISFDASGKYLATCSSDLSAK  175 (406)
T ss_pred             CchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhh---hccccceeEEEEecCccEEEecCCccchh
Confidence            344556789999999999999989999999999999999999986665   59999999999999999999999999999


Q ss_pred             EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283          259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK  338 (609)
Q Consensus       259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  338 (609)
                      +||....  .                                              .....+.+|...|.++.+.+. +.
T Consensus       176 LWd~~~~--~----------------------------------------------~c~ks~~gh~h~vS~V~f~P~-gd  206 (406)
T KOG0295|consen  176 LWDFDTF--F----------------------------------------------RCIKSLIGHEHGVSSVFFLPL-GD  206 (406)
T ss_pred             heeHHHH--H----------------------------------------------HHHHHhcCcccceeeEEEEec-CC
Confidence            9997521  0                                              011335578889999998865 47


Q ss_pred             EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283          339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL  418 (609)
Q Consensus       339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (609)
                      .+++++.|.+|+.|+..+++......                                                      
T Consensus       207 ~ilS~srD~tik~We~~tg~cv~t~~------------------------------------------------------  232 (406)
T KOG0295|consen  207 HILSCSRDNTIKAWECDTGYCVKTFP------------------------------------------------------  232 (406)
T ss_pred             eeeecccccceeEEecccceeEEecc------------------------------------------------------
Confidence            99999999999999876653221110                                                      


Q ss_pred             cCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEE
Q 007283          419 HYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIR  498 (609)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~  498 (609)
                                                .+...+..++++.||..+|+++.|.+|++|-+.+...  +..+..|+-+|.|++
T Consensus       233 --------------------------~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~--k~~lR~hEh~vEci~  284 (406)
T KOG0295|consen  233 --------------------------GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQC--KAELREHEHPVECIA  284 (406)
T ss_pred             --------------------------CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchh--hhhhhccccceEEEE
Confidence                                      0112466778899999999999999999998876543  466788999999999


Q ss_pred             ECCC---------------CCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          499 YSPD---------------VSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       499 ~s~~---------------~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      |.|.               ++++.++|.|++|++||+.++... -.+.+|...|..++|+|-|+||++...|++++|||+
T Consensus       285 wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL-~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl  363 (406)
T KOG0295|consen  285 WAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL-FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDL  363 (406)
T ss_pred             ecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE-EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEe
Confidence            9775               258999999999999999888654 468899999999999999999999999999999999


Q ss_pred             CCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          564 DKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       564 ~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                      ...  ..+..+.+|..-|++++|. +..+++|||-|-++|+|.
T Consensus       364 ~~~--~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  364 KNL--QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ccc--eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            764  3456667899999999999 667999999999999996

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.3e-31  Score=259.95  Aligned_cols=494  Identities=17%  Similarity=0.229  Sum_probs=321.2

Q ss_pred             ceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEE
Q 007283           18 RGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF   96 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~   96 (609)
                      |+-.|+|||+.-+|+..- .+.|.+||-..+..+..|.+|.++|..++|+|++.+++||+.|..|+||...+.++ ..++
T Consensus        11 RvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrc-lftL   89 (1202)
T KOG0292|consen   11 RVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRC-LFTL   89 (1202)
T ss_pred             cccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEeccccee-hhhh
Confidence            555899999999887764 57999999988888888999999999999999999999999999999999988664 4567


Q ss_pred             eecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC
Q 007283           97 RVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP  176 (609)
Q Consensus        97 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~  176 (609)
                      .+|-.-|..+.|++.--++++++|++   ++|+|.|.+.+++..+.||.-.|.|..|+|... .+++++-|.+|++||+.
T Consensus        90 ~GHlDYVRt~~FHheyPWIlSASDDQ---TIrIWNwqsr~~iavltGHnHYVMcAqFhptED-lIVSaSLDQTVRVWDis  165 (1202)
T KOG0292|consen   90 LGHLDYVRTVFFHHEYPWILSASDDQ---TIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTED-LIVSASLDQTVRVWDIS  165 (1202)
T ss_pred             ccccceeEEeeccCCCceEEEccCCC---eEEEEeccCCceEEEEecCceEEEeeccCCccc-eEEEecccceEEEEeec
Confidence            88999999999999999999999876   689999999999999999999999999999877 49999999999999841


Q ss_pred             --------CC-------------------c--eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007283          177 --------PF-------------------K--FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS  227 (609)
Q Consensus       177 --------~~-------------------~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~  227 (609)
                              ++                   .  .++.+.||.+.|+-++|+|.-..|++|++|..|++|....-+.+.. -
T Consensus       166 GLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEv-D  244 (1202)
T KOG0292|consen  166 GLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEV-D  244 (1202)
T ss_pred             chhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceee-h
Confidence                    11                   1  1234678999999999999999999999999999998776554432 2


Q ss_pred             cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE-EcCCeEEEEEcCCcEE
Q 007283          228 PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL-WQNDFLVIVSLGGTIS  306 (609)
Q Consensus       228 ~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~i~  306 (609)
                      ...||.+.|.++-|+|...+++|.|.|++||+||+..   ....+++....     +..+... ...-.++.++.|+.+-
T Consensus       245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~k---Rt~v~tfrren-----dRFW~laahP~lNLfAAgHDsGm~  316 (1202)
T KOG0292|consen  245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK---RTSVQTFRREN-----DRFWILAAHPELNLFAAGHDSGMI  316 (1202)
T ss_pred             hhhcccCCcceEEecCccceeEecCCCccEEEEeccc---ccceeeeeccC-----CeEEEEEecCCcceeeeecCCceE
Confidence            2459999999999999999999999999999999973   33445553221     1222222 2345788889999888


Q ss_pred             EEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec-cc----cccceeEeeee--CCc
Q 007283          307 IFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ-RK----ENSQIKCFAAI--EEE  379 (609)
Q Consensus       307 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~-~~----~~~~~~~~~~~--~~~  379 (609)
                      +|.+....           .  +.+++  ++.++..-  |..|+..++.+....... .+    ...+...++..  .+.
T Consensus       317 VFkleREr-----------p--a~~v~--~n~LfYvk--d~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~  379 (1202)
T KOG0292|consen  317 VFKLERER-----------P--AYAVN--GNGLFYVK--DRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENA  379 (1202)
T ss_pred             EEEEcccC-----------c--eEEEc--CCEEEEEc--cceEEeeeccccccceeEeccCCCcccCCcceeeeccccCe
Confidence            88865211           1  11222  22233332  777777776553221111 11    11223333332  222


Q ss_pred             -EEEEeccceEEEE-eccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeC--CeeeEEeccCCceeEEEE
Q 007283          380 -IVTSGFDNKIWRV-SLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRG--AEVVSTINLRFPVTASAI  455 (609)
Q Consensus       380 -~~~~~~d~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  455 (609)
                       ++++..++..+.+ .+.....+..............++-..++.+.+.........+++  ++..+.+.....+..+-.
T Consensus       380 vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvarNrfavl~k~~~~v~ik~l~N~vtkkl~~~~~~~~IF~  459 (1202)
T KOG0292|consen  380 VLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVARNRFAVLDKSNEQVVIKNLKNKVTKKLLLPESTDDIFY  459 (1202)
T ss_pred             EEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEecceEEEEecCcceEEecccchhhhcccCcccccceee
Confidence             3333334433322 222211110000000000000111111122333322121122221  111222222222333444


Q ss_pred             cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC
Q 007283          456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA  535 (609)
Q Consensus       456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~  535 (609)
                      ...|..+..  ....|.+||++....    +.+-....|.-+.||+|++++|--+ -.+|.|.+..-   .+..-..-+-
T Consensus       460 ag~g~lll~--~~~~v~lfdvQq~~~----~~si~~s~vkyvvws~dm~~vAll~-Kh~i~i~~kkL---~l~~sihEti  529 (1202)
T KOG0292|consen  460 AGTGNLLLR--SPDSVTLFDVQQKKK----VGSIKVSKVKYVVWSNDMSRVALLS-KHTITIADKKL---ELLCSIHETI  529 (1202)
T ss_pred             ccCccEEEE--cCCeEEEEEeecceE----EEEEecCceeEEEEcCccchhhhcc-cceEEEEecch---hheecchhee
Confidence            445554443  456799999976543    2233456788999999998877654 35788877321   1111112234


Q ss_pred             ceEEEEECCCCcEEEEE
Q 007283          536 RINCLAWSPNNSMVATG  552 (609)
Q Consensus       536 ~i~~l~~s~d~~~l~s~  552 (609)
                      +|.+-+|..+|-+|.+-
T Consensus       530 riksgawde~gVfiYtT  546 (1202)
T KOG0292|consen  530 RIKSGAWDEDGVFIYTT  546 (1202)
T ss_pred             EeeeceeccCceEEEEe
Confidence            67778887777665543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=1.5e-34  Score=284.94  Aligned_cols=236  Identities=23%  Similarity=0.353  Sum_probs=212.1

Q ss_pred             eEEeecCCCCeEEEe-CCCEEEEEeCCCCc-------------------------------cccccccCCCCcEEEEECC
Q 007283           20 ILISGHPKSNSILYT-NGRSVIILDLSNPL-------------------------------QVSIYGEHAYPATVARFSP   67 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~-------------------------------~~~~~~~h~~~v~~~~~sp   67 (609)
                      ..+.+++|+..||.+ .+..|.+|++...+                               ....+.||.++|..++|+|
T Consensus       382 ~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsP  461 (707)
T KOG0263|consen  382 TCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSP  461 (707)
T ss_pred             eeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecc
Confidence            477799998877765 46799999986311                               1123669999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCcc
Q 007283           68 NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRR  147 (609)
Q Consensus        68 ~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  147 (609)
                      +.++|+|+|.|++||+|.+.+..+ ...+++|..+|..++|+|-|-++++++.++   +.++|.-+...++..|.+|...
T Consensus       462 d~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~GyYFatas~D~---tArLWs~d~~~PlRifaghlsD  537 (707)
T KOG0263|consen  462 DRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRGYYFATASHDQ---TARLWSTDHNKPLRIFAGHLSD  537 (707)
T ss_pred             cccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCceEEEecCCCc---eeeeeecccCCchhhhcccccc
Confidence            999999999999999999998654 346789999999999999999999987655   5788988888999999999999


Q ss_pred             EEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007283          148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS  227 (609)
Q Consensus       148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~  227 (609)
                      |.+++|||+..+ ++|||.|+++++||..++..++.|.||.++|++++|||+|++|++|+.|+.|.+||...++.+..+ 
T Consensus       538 V~cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l-  615 (707)
T KOG0263|consen  538 VDCVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL-  615 (707)
T ss_pred             cceEEECCcccc-cccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh-
Confidence            999999999986 999999999999999999999999999999999999999999999999999999999999988776 


Q ss_pred             cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          228 PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       228 ~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                        .+|++.|+++.||.||..|+++|.|.+|++||+.
T Consensus       616 --~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~  649 (707)
T KOG0263|consen  616 --KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLT  649 (707)
T ss_pred             --hcccCceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence              4899999999999999999999999999999985

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.4e-34  Score=280.99  Aligned_cols=272  Identities=29%  Similarity=0.504  Sum_probs=216.2

Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe
Q 007283           58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN  137 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~  137 (609)
                      ..++|+.||+|+++||.|-.|-.|++|.+.+.+ ++ .++.... +..    +|     +-.++-   ..+..+-+....
T Consensus       379 ~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~k-l~-~lk~~~~-l~~----~d-----~~sad~---~~~~~D~~~~~~  443 (707)
T KOG0263|consen  379 QGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKK-LK-KLKDASD-LSN----ID-----TESADV---DVDMLDDDSSGT  443 (707)
T ss_pred             CcceeEeecCCcchhhccccccEEEEEecchhh-hc-cccchhh-hcc----cc-----ccccch---hhhhccccCCce
Confidence            459999999999999999999999999987643 11 1111100 000    00     000000   011223333445


Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      ..++-||+++|+.+.|+|+..+ +++|+.|.++++|...++.+...++||..+|.++.|+|-|-++|||+.|++.++|..
T Consensus       444 ~~~L~GH~GPVyg~sFsPd~rf-LlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~  522 (707)
T KOG0263|consen  444 SRTLYGHSGPVYGCSFSPDRRF-LLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWST  522 (707)
T ss_pred             eEEeecCCCceeeeeecccccc-eeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeec
Confidence            5668899999999999999986 999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV  297 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (609)
                      ...+.+..+   .+|-+.|.|+.|+|+..|+++||.|.++|+||+..+.                               
T Consensus       523 d~~~PlRif---aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-------------------------------  568 (707)
T KOG0263|consen  523 DHNKPLRIF---AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-------------------------------  568 (707)
T ss_pred             ccCCchhhh---cccccccceEEECCcccccccCCCCceEEEEEcCCCc-------------------------------
Confidence            765554443   5899999999999999999999999999999975210                               


Q ss_pred             EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283          298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE  377 (609)
Q Consensus       298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~  377 (609)
                            .+|+|            .||                                                      
T Consensus       569 ------~VRiF------------~GH------------------------------------------------------  576 (707)
T KOG0263|consen  569 ------SVRIF------------TGH------------------------------------------------------  576 (707)
T ss_pred             ------EEEEe------------cCC------------------------------------------------------
Confidence                  01111            112                                                      


Q ss_pred             CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283          378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP  457 (609)
Q Consensus       378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  457 (609)
                                                                                           +.+|.++++||
T Consensus       577 ---------------------------------------------------------------------~~~V~al~~Sp  587 (707)
T KOG0263|consen  577 ---------------------------------------------------------------------KGPVTALAFSP  587 (707)
T ss_pred             ---------------------------------------------------------------------CCceEEEEEcC
Confidence                                                                                 13477888999


Q ss_pred             CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~  522 (609)
                      +|++||+|+.||.|.+||+.++.+  ...+.+|++.|.+|.||.||..||+|+.|.+|++||+..
T Consensus       588 ~Gr~LaSg~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~  650 (707)
T KOG0263|consen  588 CGRYLASGDEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK  650 (707)
T ss_pred             CCceEeecccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence            999999999999999999988765  356789999999999999999999999999999999754

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=259.71  Aligned_cols=524  Identities=16%  Similarity=0.194  Sum_probs=321.4

Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283           60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG  139 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (609)
                      -..++..|..-++|-- +.-+|-|++....+. .+.+..+..++++++|||+|+++++.-.|. ..-+++|.+.....++
T Consensus        40 ~~gLa~~p~Sgl~aYp-AGCvVVlfn~~~~tQ-~hlvnssRk~~t~vAfS~~GryvatGEcG~-~pa~kVw~la~h~vVA  116 (1080)
T KOG1408|consen   40 ANGLASVPCSGLCAYP-AGCVVVLFNVDSCTQ-SHLVNSSRKPLTCVAFSQNGRYVATGECGR-TPASKVWSLAFHGVVA  116 (1080)
T ss_pred             CCcccccccccceeec-cCcEEEEEcccccch-hheecccCcceeEEEEcCCCcEEEecccCC-Cccceeeeeccccchh
Confidence            3456667766666632 235788998865431 122345567899999999999888754333 2356788887777889


Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      +|..|...|++++|+|.+.+ +++.|..+  .+.+||.... ....-..-...|..++|+.||.+++|++ +..|++|.+
T Consensus       117 EfvdHKY~vtcvaFsp~~ky-vvSVGsQHDMIVnv~dWr~N-~~~asnkiss~Vsav~fsEdgSYfvT~g-nrHvk~wyl  193 (1080)
T KOG1408|consen  117 EFVDHKYNVTCVAFSPGNKY-VVSVGSQHDMIVNVNDWRVN-SSGASNKISSVVSAVAFSEDGSYFVTSG-NRHVKLWYL  193 (1080)
T ss_pred             hhhhccccceeeeecCCCcE-EEeeccccceEEEhhhhhhc-ccccccccceeEEEEEEccCCceeeeee-eeeEEEEEe
Confidence            99999999999999999987 55555554  4566653311 0001112235688999999999999876 567899976


Q ss_pred             CCCccccccCcC----------------------------------CCC-----------------ccceEEEEECCCCC
Q 007283          218 KTADKIGELSPE----------------------------------DGH-----------------KGSVYAVSWSPDGK  246 (609)
Q Consensus       218 ~~~~~~~~~~~~----------------------------------~~h-----------------~~~V~~l~~spd~~  246 (609)
                      +.+++...-.+.                                  .||                 +-..+|++.  ..+
T Consensus       194 ~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV--s~r  271 (1080)
T KOG1408|consen  194 QIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV--SSR  271 (1080)
T ss_pred             eccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee--ecc
Confidence            655421100000                                  011                 001123333  467


Q ss_pred             eEEEEeCCCcEEEeecccCCCCceEEEec--------------------cCCCCCccceEEEEEEc--CCeEEEEEcCCc
Q 007283          247 QVLTASADKSAKVWDISEDNHGKLKKTLT--------------------PSGSGGVDDMLVGCLWQ--NDFLVIVSLGGT  304 (609)
Q Consensus       247 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~  304 (609)
                      +|++|+.+|.||+|+...-   ....++.                    ...++.+.+ .+++.|+  .+.+.++.+|..
T Consensus       272 ~I~cgCa~g~vrlFnp~tL---~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD-~IA~~Fdet~~klscVYndhS  347 (1080)
T KOG1408|consen  272 LIACGCAKGMVRLFNPETL---DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPD-AIACQFDETTDKLSCVYNDHS  347 (1080)
T ss_pred             eEEEeeccceeeecCcchh---hhccccccccccccchhhcccccccccccCcccCCc-eeEEEecCCCceEEEEEcCce
Confidence            9999999999999986531   1111110                    000111112 2344444  668899999999


Q ss_pred             EEEEeCCCCCCCc--eeeeCCCCCeEEEEEecC----------CCCEEEEEecCCcEEEEecCccccceecccc---ccc
Q 007283          305 ISIFSANDLEKSP--LQLSGHMKNVTALTVLNI----------DPKVILSSSYDGLIVKWIQGIGYGGKLQRKE---NSQ  369 (609)
Q Consensus       305 i~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~----------~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~---~~~  369 (609)
                      +++|++++..+.-  ..+--|...|+.+...+.          -+.-++||+.|++||+|++...........+   ...
T Consensus       348 lYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l  427 (1080)
T KOG1408|consen  348 LYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANL  427 (1080)
T ss_pred             EEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhh
Confidence            9999998765433  234458887777654421          1235899999999999988764332221110   000


Q ss_pred             eeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecc--cEEEee--CCeeeEEec
Q 007283          370 IKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDS--GVVLLR--GAEVVSTIN  445 (609)
Q Consensus       370 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~  445 (609)
                      ++.+..++..-       -+..-....-........+.......+++.++.  -.+.+++.  +++++.  ..+....+.
T Consensus       428 ~ki~y~d~~~q-------~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g--qhLAsGDr~GnlrVy~Lq~l~~~~~~e  498 (1080)
T KOG1408|consen  428 SKIPYEDSTQQ-------IMHDASAGIFDKALVSTCDSRFGFRALAVSPDG--QHLASGDRGGNLRVYDLQELEYTCFME  498 (1080)
T ss_pred             hcCccccCchh-------hhhhccCCcccccchhhcCcccceEEEEECCCc--ceecccCccCceEEEEehhhhhhhhee
Confidence            00000000000       000000000000000000000111222222222  22222222  233322  111222222


Q ss_pred             -cCCceeEEEEcC---CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC------------------
Q 007283          446 -LRFPVTASAIAP---DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV------------------  503 (609)
Q Consensus       446 -~~~~~~~~~~sp---~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~------------------  503 (609)
                       +..++.|+.++.   ..++||+++.|+.|++||+..+. ...+++.+|...|++|.|.-+|                  
T Consensus       499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny-~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~  577 (1080)
T KOG1408|consen  499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNY-DLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRV  577 (1080)
T ss_pred             cccceeEEEeecCchhhhHhhhhccCCceEEEEeccccc-chhhhhcccccceeEEEEeecCCceEEEeccCchhhheeh
Confidence             445677887763   34679999999999999997553 2345677777777777665443                  


Q ss_pred             -------------------------------CEEEEEeCCCeEEEEEccCCceEEeeec---CCCCceEEEEECCCCcEE
Q 007283          504 -------------------------------SMFASGDVNREAIVWDRVSREVKLKNML---YHTARINCLAWSPNNSMV  549 (609)
Q Consensus       504 -------------------------------~~l~s~s~d~~v~iwd~~~~~~~~~~~~---~h~~~i~~l~~s~d~~~l  549 (609)
                                                     ++++++++|+.|+|||++++++. +.++   .|.+..-.+...|.|.||
T Consensus       578 ~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSgiY~  656 (1080)
T KOG1408|consen  578 NQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSGIYL  656 (1080)
T ss_pred             hccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecccccee-eeecccccCCCceEEEEECCCccEE
Confidence                                           46889999999999999887653 3343   466778889999999999


Q ss_pred             EEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEccC
Q 007283          550 ATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       550 ~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      |++..|+++.++|.-.+  +.+....||+..|+.+.|+ |-++|||++.||+|.+|.+..
T Consensus       657 atScsdktl~~~Df~sg--EcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  657 ATSCSDKTLCFVDFVSG--ECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             EEeecCCceEEEEeccc--hhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence            99999999999998753  4455556899999999999 778999999999999999853

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=6.6e-33  Score=242.83  Aligned_cols=286  Identities=24%  Similarity=0.381  Sum_probs=227.6

Q ss_pred             eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA-DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      .+.||++.|+.+.|+|+|..||+|+.|..|.+|++... +....+   ++|++.|..+.|.+|+..++++|.|.+++.||
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~l---kgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD  118 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVL---KGHSGAVMELHGMRDGSHILSCGTDKTVRGWD  118 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeee---ccccceeEeeeeccCCCEEEEecCCceEEEEe
Confidence            46789999999999999999999999999999985432 222233   59999999999999999999999999999999


Q ss_pred             cccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283          262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL  341 (609)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  341 (609)
                      +..   ++..                                              ..+++|.+-|..+.-...++.++.
T Consensus       119 ~~t---G~~~----------------------------------------------rk~k~h~~~vNs~~p~rrg~~lv~  149 (338)
T KOG0265|consen  119 AET---GKRI----------------------------------------------RKHKGHTSFVNSLDPSRRGPQLVC  149 (338)
T ss_pred             ccc---ceee----------------------------------------------ehhccccceeeecCccccCCeEEE
Confidence            873   2221                                              123456666666665556668899


Q ss_pred             EEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCC
Q 007283          342 SSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP  421 (609)
Q Consensus       342 t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (609)
                      |++.|+++++||......                                                              
T Consensus       150 SgsdD~t~kl~D~R~k~~--------------------------------------------------------------  167 (338)
T KOG0265|consen  150 SGSDDGTLKLWDIRKKEA--------------------------------------------------------------  167 (338)
T ss_pred             ecCCCceEEEEeecccch--------------------------------------------------------------
Confidence            999999999997642110                                                              


Q ss_pred             cEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC
Q 007283          422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP  501 (609)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~  501 (609)
                                         +..++.++++++++|.-++..+++|+=|+.|++||++.+..  ..++++|..+|+.++.+|
T Consensus       168 -------------------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~  226 (338)
T KOG0265|consen  168 -------------------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSR  226 (338)
T ss_pred             -------------------hhccccceeEEEEEecccccceeeccccCceeeeccccCcc--eEEeecccCceeeEEecc
Confidence                               01111234578888988899999999999999999976654  468899999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccC---CceEEeeecCCCC----ceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEe
Q 007283          502 DVSMFASGDVNREAIVWDRVS---REVKLKNMLYHTA----RINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIK  574 (609)
Q Consensus       502 ~~~~l~s~s~d~~v~iwd~~~---~~~~~~~~~~h~~----~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~  574 (609)
                      +|.++.+-+.|.++++||+..   .+..++...+|..    ....++|||+++.+..|+.|+.+.+||....  ..+..+
T Consensus       227 ~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r--~~lykl  304 (338)
T KOG0265|consen  227 YGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR--RILYKL  304 (338)
T ss_pred             CCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc--cEEEEc
Confidence            999999999999999999754   2233444444433    2567899999999999999999999997532  345667


Q ss_pred             ccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          575 GAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       575 ~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                      .||.+.|.+++|. .+..|.++|.|++|.+=.
T Consensus       305 pGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  305 PGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            8999999999999 667889999999998643

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=6.4e-34  Score=259.04  Aligned_cols=289  Identities=26%  Similarity=0.353  Sum_probs=227.2

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH--VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV  127 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  127 (609)
                      .+++..|++.|..+.|||+|+||||++.|.|..+|++....  .+..++.+|..+|..+.||||.++|++||.+.   .+
T Consensus       217 ~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e---~~  293 (519)
T KOG0293|consen  217 WQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDE---VL  293 (519)
T ss_pred             hhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchH---he
Confidence            35678999999999999999999999999999999987654  24567889999999999999999999998655   35


Q ss_pred             EEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCc-ccceEEEEEcCCCCEEEE
Q 007283          128 RAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGH-SNFVNCVRFSPDGSKFIS  205 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s  205 (609)
                      .+|+.+++.....+. +|...+.+|+|-||+. ++++|+.|+.+..|+..-. ......+- ...|.+++.++||+.+++
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~-~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGF-RFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEccCCc-eeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEE
Confidence            667777777766554 4567899999999996 6999999999999985421 11122222 245999999999999999


Q ss_pred             EeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccce
Q 007283          206 VSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDM  285 (609)
Q Consensus       206 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  285 (609)
                      .+.|..|++++.++........    ....|++.+.|.|++++++.-.+..+++||+.+   .++...+.....   ...
T Consensus       372 v~~d~~i~l~~~e~~~dr~lis----e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e---~~lv~kY~Ghkq---~~f  441 (519)
T KOG0293|consen  372 VTVDKKIRLYNREARVDRGLIS----EEQPITSFSISKDGKLALVNLQDQEIHLWDLEE---NKLVRKYFGHKQ---GHF  441 (519)
T ss_pred             Eecccceeeechhhhhhhcccc----ccCceeEEEEcCCCcEEEEEcccCeeEEeecch---hhHHHHhhcccc---cce
Confidence            9999999999987665544332    235799999999999999999999999999973   222222211111   112


Q ss_pred             EEEEEEc---CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283          286 LVGCLWQ---NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       286 ~~~~~~~---~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~  354 (609)
                      ++..+|.   ..++++|+.|+.|++|.-.. ......+.||.+.|.++++++.++.++|++|+||+||+|-.
T Consensus       442 iIrSCFgg~~~~fiaSGSED~kvyIWhr~s-gkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~  512 (519)
T KOG0293|consen  442 IIRSCFGGGNDKFIASGSEDSKVYIWHRIS-GKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGP  512 (519)
T ss_pred             EEEeccCCCCcceEEecCCCceEEEEEccC-CceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecC
Confidence            2333332   35889999999999998543 45567899999999999999999999999999999999944

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-32  Score=254.06  Aligned_cols=334  Identities=20%  Similarity=0.330  Sum_probs=264.6

Q ss_pred             cCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCC------c-eeeEEEe------ecccceeEEEECCCCCEEEEEEC
Q 007283           55 EHAYPATVARFSPNGE-WIASADVSGTVRIWGAHND------H-VLKKEFR------VLSGRIDDLQWSPDGLRIVACGD  120 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~------~-~~~~~~~------~~~~~v~~~~~spdg~~l~~~~~  120 (609)
                      .|+.+|.+.+|+|-.. ++|+++.|-+.|+|++...      + .+++.++      ..+..|++++|+.||..|++...
T Consensus       176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~  255 (524)
T KOG0273|consen  176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE  255 (524)
T ss_pred             cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence            4999999999999877 8999999999999998741      1 1221111      11357999999999998888654


Q ss_pred             CCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCC
Q 007283          121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG  200 (609)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  200 (609)
                      +.   .+|+|.- .+..+.++..|.++|.++.|...|.+ |++++.|+++.+||..++.....+.-|..+...+.|-.+.
T Consensus       256 ~G---~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~  330 (524)
T KOG0273|consen  256 DG---EARIWNK-DGNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSND  330 (524)
T ss_pred             Cc---EEEEEec-CchhhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCc
Confidence            33   3444432 34556678899999999999999986 9999999999999999888888888888876778886654


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCC
Q 007283          201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG  280 (609)
Q Consensus       201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  280 (609)
                       .+++.+.|+.|.++-+.....+.++.   +|.+.|.++.|.|.|.+|+++|.|++++||.+....              
T Consensus       331 -~F~ts~td~~i~V~kv~~~~P~~t~~---GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~--------------  392 (524)
T KOG0273|consen  331 -EFATSSTDGCIHVCKVGEDRPVKTFI---GHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN--------------  392 (524)
T ss_pred             -eEeecCCCceEEEEEecCCCcceeee---cccCceEEEEECCCCceEEEecCCCeeEeeecCCCc--------------
Confidence             58999999999999887777676663   799999999999999999999999999999864210              


Q ss_pred             CccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccc
Q 007283          281 GVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG  360 (609)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~  360 (609)
                                                         ....+.+|.+.|+.+.+++.++-            .|        
T Consensus       393 -----------------------------------~~~~l~~Hskei~t~~wsp~g~v------------~~--------  417 (524)
T KOG0273|consen  393 -----------------------------------SVHDLQAHSKEIYTIKWSPTGPV------------TS--------  417 (524)
T ss_pred             -----------------------------------chhhhhhhccceeeEeecCCCCc------------cC--------
Confidence                                               11235678888877776543210            00        


Q ss_pred             eeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCee
Q 007283          361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEV  440 (609)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (609)
                                                                                                      
T Consensus       418 --------------------------------------------------------------------------------  417 (524)
T KOG0273|consen  418 --------------------------------------------------------------------------------  417 (524)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283          441 VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDR  520 (609)
Q Consensus       441 ~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~  520 (609)
                                    -.-.+..+++++.|++|++||+..+..  ..++.+|..+|.+|+|||+|+++|+|+.|+-|.+|+.
T Consensus       418 --------------n~~~~~~l~sas~dstV~lwdv~~gv~--i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~  481 (524)
T KOG0273|consen  418 --------------NPNMNLMLASASFDSTVKLWDVESGVP--IHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWST  481 (524)
T ss_pred             --------------CCcCCceEEEeecCCeEEEEEccCCce--eEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccc
Confidence                          001345588889999999999987765  4678899999999999999999999999999999998


Q ss_pred             cCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          521 VSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       521 ~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      ..++.. + ...-+..|..|+|+.+|.+|..+-.|+.+.|-|+.
T Consensus       482 ~~~~l~-~-s~~~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr  523 (524)
T KOG0273|consen  482 KTGKLV-K-SYQGTGGIFELCWNAAGDKLGACASDGSVCVLDLR  523 (524)
T ss_pred             cchhee-E-eecCCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence            776542 2 23456679999999999999999999999998763

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.3e-32  Score=240.95  Aligned_cols=289  Identities=21%  Similarity=0.311  Sum_probs=239.6

Q ss_pred             cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283           53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  132 (609)
                      +.||++.|+.+.|+|+|.++|||+.|..|-+|.+.....-...+.+|++.|..+.|.+|+..++++|.++   .++.|+-
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk---~v~~wD~  119 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDK---TVRGWDA  119 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCc---eEEEEec
Confidence            5799999999999999999999999999999997654433345679999999999999999999999766   4677888


Q ss_pred             CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      ++++....+++|.+.|.++.-..-|+..+.+++.|+++++||.+.......+. .+.+++++.|..++..+.+|+-|+.|
T Consensus       120 ~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~i  198 (338)
T KOG0265|consen  120 ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDI  198 (338)
T ss_pred             ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccccCce
Confidence            88999999999999999999666677889999999999999998766655543 35679999999999999999999999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCc-eEEEeccCCCCCccceEEEEEE
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK-LKKTLTPSGSGGVDDMLVGCLW  291 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      ++||++..+....+   .||...|+.+..+|+|.++.+-+.|.++++||++.-.+.. .++.+.. ....++.....|.|
T Consensus       199 kvWd~r~~d~~~~l---sGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g-~~hnfeknlL~csw  274 (338)
T KOG0265|consen  199 KVWDLRKNDGLYTL---SGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQG-HIHNFEKNLLKCSW  274 (338)
T ss_pred             eeeccccCcceEEe---ecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeec-chhhhhhhcceeec
Confidence            99999999888776   4999999999999999999999999999999997543332 2443321 22233445567778


Q ss_pred             cCC--eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEE
Q 007283          292 QND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVK  351 (609)
Q Consensus       292 ~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~  351 (609)
                      +++  .+-+++.|..+++|+... ......++||...|.+++|++.. .++.+++.|.+|.+
T Consensus       275 sp~~~~i~ags~dr~vyvwd~~~-r~~lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~l  334 (338)
T KOG0265|consen  275 SPNGTKITAGSADRFVYVWDTTS-RRILYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYL  334 (338)
T ss_pred             cCCCCccccccccceEEEeeccc-ccEEEEcCCcceeEEEeeecCCC-cEEEEeccCceeEe
Confidence            744  667788899999998643 23445689999999999999754 58999999999875

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=2.4e-34  Score=256.14  Aligned_cols=275  Identities=20%  Similarity=0.389  Sum_probs=217.1

Q ss_pred             CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007283          144 HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI  223 (609)
Q Consensus       144 h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~  223 (609)
                      ....|+++.+..+   .+++|..|.+|++||.....+...+.||.+.|.|+.|.  .+.|++|+.|.+|++||+++++.+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l  270 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL  270 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh
Confidence            3567999988543   49999999999999999999999999999999999994  458999999999999999999998


Q ss_pred             cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCC
Q 007283          224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGG  303 (609)
Q Consensus       224 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  303 (609)
                      .++.   +|...|..+.|+  +.+++++|.|.++++||+......                                   
T Consensus       271 ~tli---hHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~i-----------------------------------  310 (499)
T KOG0281|consen  271 NTLI---HHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDI-----------------------------------  310 (499)
T ss_pred             hHHh---hhcceeEEEEEe--CCEEEEecCCceeEEEeccCchHH-----------------------------------
Confidence            8874   799999999996  468999999999999998531100                                   


Q ss_pred             cEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEE
Q 007283          304 TISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTS  383 (609)
Q Consensus       304 ~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (609)
                                 .....+.||...|..+.|                                                   
T Consensus       311 -----------t~rrVLvGHrAaVNvVdf---------------------------------------------------  328 (499)
T KOG0281|consen  311 -----------TLRRVLVGHRAAVNVVDF---------------------------------------------------  328 (499)
T ss_pred             -----------HHHHHHhhhhhheeeecc---------------------------------------------------
Confidence                       001234566555544443                                                   


Q ss_pred             eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEE
Q 007283          384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAI  463 (609)
Q Consensus       384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  463 (609)
                                                                                                |.++++
T Consensus       329 --------------------------------------------------------------------------d~kyIV  334 (499)
T KOG0281|consen  329 --------------------------------------------------------------------------DDKYIV  334 (499)
T ss_pred             --------------------------------------------------------------------------ccceEE
Confidence                                                                                      234555


Q ss_pred             EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC
Q 007283          464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS  543 (609)
Q Consensus       464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s  543 (609)
                      ++|.|.+|++|++.+..+  ..++.+|+..|.|+.+  .|++++|||.|.+|++||++.+.. +..+.+|..-|.|+.| 
T Consensus       335 sASgDRTikvW~~st~ef--vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~c-LRvLeGHEeLvRciRF-  408 (499)
T KOG0281|consen  335 SASGDRTIKVWSTSTCEF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF-  408 (499)
T ss_pred             EecCCceEEEEeccceee--ehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHH-HHHHhchHHhhhheee-
Confidence            666666666666655444  4567889999999877  789999999999999999887654 4567799999999999 


Q ss_pred             CCCcEEEEEeCCCeEEEEEcCCCCCc-------ceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          544 PNNSMVATGSLDTCVIIYEIDKPASS-------RMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       544 ~d~~~l~s~s~D~~v~vw~~~~~~~~-------~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                       |.+.+++|..||+|+|||+......       .+..+..|+++|..+.|.+ ..|++++.|.+|.+||+.
T Consensus       409 -d~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~-fqIvsssHddtILiWdFl  477 (499)
T KOG0281|consen  409 -DNKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDE-FQIISSSHDDTILIWDFL  477 (499)
T ss_pred             -cCceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeecc-eEEEeccCCCeEEEEEcC
Confidence             6888999999999999998642211       1223456999999999964 568999999999999983

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.7e-32  Score=268.17  Aligned_cols=379  Identities=20%  Similarity=0.339  Sum_probs=275.2

Q ss_pred             EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC
Q 007283           96 FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG  175 (609)
Q Consensus        96 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~  175 (609)
                      |...+..|..++|+|..-++++.=-   ...+++|++..+.++..|.+|.++|..++|||+++. |++||.|++|++|+.
T Consensus         5 fEskSsRvKglsFHP~rPwILtslH---sG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qpl-FVSGGDDykIkVWnY   80 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLH---SGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPL-FVSGGDDYKIKVWNY   80 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeec---CceeeeehhhhhhHHhhhhccCCccceeeecCCCCe-EEecCCccEEEEEec
Confidence            3445667999999999988887542   236889999999999999999999999999999995 999999999999999


Q ss_pred             CCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC
Q 007283          176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK  255 (609)
Q Consensus       176 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~  255 (609)
                      ...++.+++.||.++|..+.|++.-.+|+++|+|.+|+||++++.+++..+   .||+.-|.|..|+|...+++|+|-|.
T Consensus        81 k~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavl---tGHnHYVMcAqFhptEDlIVSaSLDQ  157 (1202)
T KOG0292|consen   81 KTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVL---TGHNHYVMCAQFHPTEDLIVSASLDQ  157 (1202)
T ss_pred             ccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEE---ecCceEEEeeccCCccceEEEecccc
Confidence            999999999999999999999999999999999999999999999999887   49999999999999999999999999


Q ss_pred             cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC
Q 007283          256 SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI  335 (609)
Q Consensus       256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  335 (609)
                      +||+||++.    ..++...+.   +.++.....--+.+  +.++.|..           ....+.||...|..++|++.
T Consensus       158 TVRVWDisG----LRkk~~~pg---~~e~~~~~~~~~~d--Lfg~~DaV-----------VK~VLEGHDRGVNwaAfhpT  217 (1202)
T KOG0292|consen  158 TVRVWDISG----LRKKNKAPG---SLEDQMRGQQGNSD--LFGQTDAV-----------VKHVLEGHDRGVNWAAFHPT  217 (1202)
T ss_pred             eEEEEeecc----hhccCCCCC---Cchhhhhccccchh--hcCCcCee-----------eeeeecccccccceEEecCC
Confidence            999999863    222222111   11111110000000  11111111           11457899999999999864


Q ss_pred             CCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeE
Q 007283          336 DPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS  415 (609)
Q Consensus       336 ~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (609)
                      . .++++|++|+.|++|..+..                              +.|-.+.                     
T Consensus       218 l-pliVSG~DDRqVKlWrmnet------------------------------KaWEvDt---------------------  245 (1202)
T KOG0292|consen  218 L-PLIVSGADDRQVKLWRMNET------------------------------KAWEVDT---------------------  245 (1202)
T ss_pred             c-ceEEecCCcceeeEEEeccc------------------------------cceeehh---------------------
Confidence            3 48999999999999954311                              1111110                     


Q ss_pred             eeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceE
Q 007283          416 VALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVS  495 (609)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~  495 (609)
                                                 ...|...|+++-|+|...++++.+.|++||+||++....  .+++....+.-+
T Consensus       246 ---------------------------crgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~--v~tfrrendRFW  296 (1202)
T KOG0292|consen  246 ---------------------------CRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS--VQTFRRENDRFW  296 (1202)
T ss_pred             ---------------------------hhcccCCcceEEecCccceeEecCCCccEEEEecccccc--eeeeeccCCeEE
Confidence                                       011224588999999999999999999999999986653  456666778899


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcc-eeEe
Q 007283          496 VIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSR-MTIK  574 (609)
Q Consensus       496 ~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~-~~~~  574 (609)
                      +++..|...++|+| .|+-+.++-++...           +  +.+.+. +. |.-.- |..|+-+|+.+.+... +.+.
T Consensus       297 ~laahP~lNLfAAg-HDsGm~VFkleREr-----------p--a~~v~~-n~-LfYvk-d~~i~~~d~~t~~d~~v~~lr  359 (1202)
T KOG0292|consen  297 ILAAHPELNLFAAG-HDSGMIVFKLERER-----------P--AYAVNG-NG-LFYVK-DRFIRSYDLRTQKDTAVASLR  359 (1202)
T ss_pred             EEEecCCcceeeee-cCCceEEEEEcccC-----------c--eEEEcC-CE-EEEEc-cceEEeeeccccccceeEecc
Confidence            99999999999876 66667777543221           1  234442 22 33333 8889999987643221 2222


Q ss_pred             cc--ccCCeEEEEEcCC-C-eEEEEeCCC
Q 007283          575 GA--HLGGVYGLAFTDE-H-SVVSSGEDA  599 (609)
Q Consensus       575 ~~--h~~~v~~~~~s~~-~-~l~s~s~D~  599 (609)
                      .+  .-....++.|.+. + .++++..|+
T Consensus       360 ~~g~~~~~~~smsYNpae~~vlics~~~n  388 (1202)
T KOG0292|consen  360 RPGTLWQPPRSLSYNPAENAVLICSNLDN  388 (1202)
T ss_pred             CCCcccCCcceeeeccccCeEEEEeccCC
Confidence            11  1245677888743 2 344444443

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=1.4e-30  Score=252.32  Aligned_cols=580  Identities=19%  Similarity=0.269  Sum_probs=358.7

Q ss_pred             cCceeEEeecCCCC---eEEEe-CCCEEEEEeCCCCccc--cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283           16 RGRGILISGHPKSN---SILYT-NGRSVIILDLSNPLQV--SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND   89 (609)
Q Consensus        16 ~~~~~~~~~~~~~~---~l~~~-~~~~~~i~~~~~~~~~--~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~   89 (609)
                      .++...+..-|..+   .++.+ .++.+++|.+......  ..+.+|.  +.+.+++..-........|+++.+||.+..
T Consensus        54 ~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~--~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~  131 (764)
T KOG1063|consen   54 VARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHC--KECVCVVARSSVMTCKAADGTVSVWDKQQD  131 (764)
T ss_pred             ccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcc--eeEEEEEeeeeEEEeeccCceEEEeecCCC
Confidence            33444555555544   34544 3578899999743332  3345666  445555544444444478999999999665


Q ss_pred             ce-eeEEEeecccce--eEEEECC-CCCEEEEEECCCCcceEEEEEcCC--CCeeEEEecCCccEEEEEEeeCC--CeEE
Q 007283           90 HV-LKKEFRVLSGRI--DDLQWSP-DGLRIVACGDGKGKSLVRAFMWDS--GTNVGEFDGHSRRVLSCAFKPSR--PFRI  161 (609)
Q Consensus        90 ~~-~~~~~~~~~~~v--~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~p~~--~~~i  161 (609)
                      +. +...++...+.+  .++++.| .+..|+++|..+.  .+.++--..  -+...++.||.+-|.+++|...+  ...+
T Consensus       132 e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~--~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~l  209 (764)
T KOG1063|consen  132 EVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKF--VVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLL  209 (764)
T ss_pred             ceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcce--EEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEE
Confidence            52 333444444443  4556667 5678888875432  233322221  14567889999999999997543  5779


Q ss_pred             EEecCCCeEEEEeCCCCc-------------------------ee------eeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283          162 ATCGEDFLVNFYEGPPFK-------------------------FK------LSHRGHSNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       162 ~t~~~d~~i~~~~~~~~~-------------------------~~------~~~~~h~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                      |++++|..|++|.+....                         ..      ..+.||.+.|.++.|+|++..|++++.|+
T Consensus       210 aS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDk  289 (764)
T KOG1063|consen  210 ASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADK  289 (764)
T ss_pred             EecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCc
Confidence            999999999999532111                         00      11459999999999999999999999999


Q ss_pred             cEEEEeCCCCcccc----ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283          211 KGIIYDGKTADKIG----ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML  286 (609)
Q Consensus       211 ~i~iwd~~~~~~~~----~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  286 (609)
                      ++++|.+.+..-+.    ++....|..+...+..|+|++..+++-+.-|-.++|....  .....+..  .. .+..+.+
T Consensus       290 smiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--~~~w~~~~--~i-SGH~~~V  364 (764)
T KOG1063|consen  290 SMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--KTFWTQEP--VI-SGHVDGV  364 (764)
T ss_pred             ceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC--ccceeecc--cc-ccccccc
Confidence            99999876543221    2222234456788999999999999999999999998321  12111111  11 1122233


Q ss_pred             EEEEEc--CCeEEEEEcCCcEEEEeCCCCCC---CceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccce
Q 007283          287 VGCLWQ--NDFLVIVSLGGTISIFSANDLEK---SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK  361 (609)
Q Consensus       287 ~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~  361 (609)
                      ....|.  ++++++++.|.+-|+|.......   ....-+-|--..+++++.+. +..+++|.....+|++..-......
T Consensus       365 ~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~  443 (764)
T KOG1063|consen  365 KDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKS  443 (764)
T ss_pred             eeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-CceeeecccceeeeeecCcHHHHHH
Confidence            445676  78999999999999997542111   11123456668888888764 4689999999999999653322111


Q ss_pred             ecc-------ccccc-----eeEeeeeCCcEE-----EEeccceEEEEec---------cCCcc----------cccccc
Q 007283          362 LQR-------KENSQ-----IKCFAAIEEEIV-----TSGFDNKIWRVSL---------QGDQC----------GYANSI  405 (609)
Q Consensus       362 ~~~-------~~~~~-----~~~~~~~~~~~~-----~~~~d~~i~~~~~---------~~~~~----------~~~~~~  405 (609)
                      ...       .....     +..+..++..+.     ++.. +..+.-..         .+...          ...+.+
T Consensus       444 l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~-~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY  522 (764)
T KOG1063|consen  444 LMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGE-AAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY  522 (764)
T ss_pred             HHHHhCccccCchhcccccccccccccCCCCcccccccccc-cceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence            000       00000     000000000000     0000 00000000         00000          000111


Q ss_pred             ccCCCCceeEeeccCCcEEEEEe------cccEEEeeCC--eeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEe
Q 007283          406 DIGSQPKDLSVALHYPELVLVST------DSGVVLLRGA--EVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSI  476 (609)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~--~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~  476 (609)
                      .++.+...+.+.+.+ ++++...      ...+.+|...  .....+ .|...|+-++|||||++|++.+.|+++.+|+.
T Consensus       523 GHGyEv~~l~~s~~g-nliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  523 GHGYEVYALAISPTG-NLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             cCceeEEEEEecCCC-CEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            233344444433322 3333332      1235555422  112222 35677999999999999999999999999998


Q ss_pred             cCCeeee--eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC--ceEEe-eecCCCCceEEEEECCC-----C
Q 007283          477 RGDTLTE--EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR--EVKLK-NMLYHTARINCLAWSPN-----N  546 (609)
Q Consensus       477 ~~~~~~~--~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~--~~~~~-~~~~h~~~i~~l~~s~d-----~  546 (609)
                      +.+....  -...+.|+..|++.+|+|++.++|++|.|++|++|.....  +...+ ....+...|++++|.|-     +
T Consensus       602 ~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~  681 (764)
T KOG1063|consen  602 QEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKG  681 (764)
T ss_pred             ecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccccccc
Confidence            6543221  1236789999999999999999999999999999987654  21111 23458889999999873     2


Q ss_pred             cEEEEEeCCCeEEEEEcCCCCCc----------ceeEeccccCCeEEEEEcCC-----------CeEEEEeCCCcEEEEE
Q 007283          547 SMVATGSLDTCVIIYEIDKPASS----------RMTIKGAHLGGVYGLAFTDE-----------HSVVSSGEDACVRVWR  605 (609)
Q Consensus       547 ~~l~s~s~D~~v~vw~~~~~~~~----------~~~~~~~h~~~v~~~~~s~~-----------~~l~s~s~D~~i~~W~  605 (609)
                      ..++.|-.-|.|.+|.......+          +..-..+|...|.-+.|++-           ..|+++|.|.++++++
T Consensus       682 ~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~n  761 (764)
T KOG1063|consen  682 DVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFN  761 (764)
T ss_pred             ceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccceeEEee
Confidence            36789999999999996521100          11123467888999999722           1379999999999999


Q ss_pred             cc
Q 007283          606 LT  607 (609)
Q Consensus       606 ~~  607 (609)
                      ++
T Consensus       762 v~  763 (764)
T KOG1063|consen  762 VD  763 (764)
T ss_pred             cc
Confidence            85

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=7.1e-34  Score=258.60  Aligned_cols=240  Identities=27%  Similarity=0.515  Sum_probs=201.6

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-
Q 007283           57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-  135 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-  135 (609)
                      +-+|..++|.|+|+.|++|+..|...||...+-. ....+..|..+|+++.||++|.++++...+   .+++  .|+.+ 
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn-FEtilQaHDs~Vr~m~ws~~g~wmiSgD~g---G~iK--yWqpnm  169 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN-FETILQAHDSPVRTMKWSHNGTWMISGDKG---GMIK--YWQPNM  169 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceee-HHHHhhhhcccceeEEEccCCCEEEEcCCC---ceEE--ecccch
Confidence            4579999999999999999999999999874311 112245789999999999999999985432   2444  45543 


Q ss_pred             CeeEEEecC-CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283          136 TNVGEFDGH-SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII  214 (609)
Q Consensus       136 ~~~~~~~~h-~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~i  214 (609)
                      .++..+..| ...|.+++|+|++. .|++|+.|++|++||....+....+.||.-.|.|+.|+|.-.+|++||.|..|++
T Consensus       170 nnVk~~~ahh~eaIRdlafSpnDs-kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKl  248 (464)
T KOG0284|consen  170 NNVKIIQAHHAEAIRDLAFSPNDS-KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKL  248 (464)
T ss_pred             hhhHHhhHhhhhhhheeccCCCCc-eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEe
Confidence            234445555 48999999999877 5999999999999998888888888999999999999999999999999999999


Q ss_pred             EeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC
Q 007283          215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND  294 (609)
Q Consensus       215 wd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (609)
                      ||.+++.++.++.   +|+..|..+.|.|++.+|+++|.|..++++|++.   .+                         
T Consensus       249 WDprSg~cl~tlh---~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~---mk-------------------------  297 (464)
T KOG0284|consen  249 WDPRSGSCLATLH---GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT---MK-------------------------  297 (464)
T ss_pred             ecCCCcchhhhhh---hccceEEEEEEcCCCCeeEEccCCceEEEEehhH---hH-------------------------
Confidence            9999999998874   7999999999999999999999999999999861   10                         


Q ss_pred             eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          295 FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       295 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                                           ....+.+|.+.|.++++++..+.++.+|+.||.|..|...
T Consensus       298 ---------------------El~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~  337 (464)
T KOG0284|consen  298 ---------------------ELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVG  337 (464)
T ss_pred             ---------------------HHHHhhcchhhheeeccccccccceeeccCCCceEEEecc
Confidence                                 1123568999999999999888999999999999999654

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=4.2e-29  Score=233.39  Aligned_cols=477  Identities=18%  Similarity=0.246  Sum_probs=322.3

Q ss_pred             EEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--------eEEEEeCCC
Q 007283          106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--------LVNFYEGPP  177 (609)
Q Consensus       106 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--------~i~~~~~~~  177 (609)
                      +-+-|-|+.+..+.     .+..++.|+...+ .-+-+|...|.+++.||+.- ++++|-..+        .+++||..+
T Consensus        71 ly~lptgE~vyfvA-----~V~Vl~n~ee~~Q-r~y~GH~ddikc~~vHPdri-~vatGQ~ag~~g~~~~phvriWdsv~  143 (626)
T KOG2106|consen   71 LYLLPTGELVYFVA-----AVGVLYNWEERSQ-RHYLGHNDDIKCMAVHPDRI-RVATGQGAGTSGRPLQPHVRIWDSVT  143 (626)
T ss_pred             eEEccCccEEEEec-----cEEEEEeehhhhc-ccccCCCCceEEEeecCCce-eeccCcccccCCCcCCCeeeeccccc
Confidence            44556555443322     1344677755332 33679999999999999875 477663333        489999777


Q ss_pred             CceeeeccCcccceEEEEEcCC--CCEEEEEe--CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPD--GSKFISVS--SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~  253 (609)
                      ......+..-...|.|++|++-  |..|+...  .+..+-+||++.++.....+   ..+..|..+.|+|-+..|+....
T Consensus       144 L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FHPtd~nliit~G  220 (626)
T KOG2106|consen  144 LSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFHPTDPNLIITCG  220 (626)
T ss_pred             ceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcce---eccceEEEEEeccCCCcEEEEeC
Confidence            6666666666677999999975  55555543  34456789998887765553   45677899999997665555555


Q ss_pred             CCcEEEeecccCCCCceEEEe-ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283          254 DKSAKVWDISEDNHGKLKKTL-TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV  332 (609)
Q Consensus       254 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~  332 (609)
                      .+++.+|+++.+.   +.+.. ....... ......++-.+...+++..+|+|.+|..... ....+...|.+.|.+++.
T Consensus       221 k~H~~Fw~~~~~~---l~k~~~~fek~ek-k~Vl~v~F~engdviTgDS~G~i~Iw~~~~~-~~~k~~~aH~ggv~~L~~  295 (626)
T KOG2106|consen  221 KGHLYFWTLRGGS---LVKRQGIFEKREK-KFVLCVTFLENGDVITGDSGGNILIWSKGTN-RISKQVHAHDGGVFSLCM  295 (626)
T ss_pred             CceEEEEEccCCc---eEEEeeccccccc-eEEEEEEEcCCCCEEeecCCceEEEEeCCCc-eEEeEeeecCCceEEEEE
Confidence            7899999987432   22221 1111111 1222222334678999999999999986433 333444589999999998


Q ss_pred             ecCCCCEEEEEecCCcEEEEecCccccceecc-ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCC
Q 007283          333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR-KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP  411 (609)
Q Consensus       333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  411 (609)
                      ...  ..+++|+.|+.|..|+.+-........ .....++.++.....++.+...+.|..-.+++.....  ..-++.+.
T Consensus       296 lr~--GtllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~--v~gh~del  371 (626)
T KOG2106|consen  296 LRD--GTLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT--VQGHGDEL  371 (626)
T ss_pred             ecC--ccEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE--EEecccce
Confidence            743  567789999999999854332211111 1223455555555557777777777665555443210  00112223


Q ss_pred             ceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCC
Q 007283          412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR  491 (609)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~  491 (609)
                      ..++..+..+.++..+-+..+.+|+.+.+........+..|++|+|.| .+|+|+..|...+.|.++..+..   +....
T Consensus       372 wgla~hps~~q~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~---~~~d~  447 (626)
T KOG2106|consen  372 WGLATHPSKNQLLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT---IHTDN  447 (626)
T ss_pred             eeEEcCCChhheeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEE---EEecC
Confidence            333333444444555556678889888887777788899999999999 99999999999999998765533   22237


Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeee-cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcc
Q 007283          492 GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM-LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSR  570 (609)
Q Consensus       492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~  570 (609)
                      .++++++|+|+|.++|.|+.|+.|++|.+.....++... +.|-..|+.++||+|+++|.+-+.|-.|..|.... ..+.
T Consensus       448 ~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~-~~~~  526 (626)
T KOG2106|consen  448 EQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE-CKQI  526 (626)
T ss_pred             CceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc-Cccc
Confidence            899999999999999999999999999987665554432 23447899999999999999999999999994321 1011


Q ss_pred             e-----------------eEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          571 M-----------------TIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       571 ~-----------------~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      .                 ....+|..-|..++-+ .+.+++++-+.|.|+++..
T Consensus       527 ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~y  580 (626)
T KOG2106|consen  527 TSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSY  580 (626)
T ss_pred             ceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEcc
Confidence            0                 1123455566777766 6677888888999999865

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=2.8e-33  Score=254.76  Aligned_cols=287  Identities=24%  Similarity=0.333  Sum_probs=234.9

Q ss_pred             CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283          145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      .-.|..+.|.|+|. +|++|+..|...+|+...+..+..+..|..+|.++.|+++|.++++|..+|.|++|+..-.....
T Consensus        96 kc~V~~v~WtPeGR-RLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~  174 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGR-RLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKI  174 (464)
T ss_pred             ccceeeEEEcCCCc-eeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHH
Confidence            34688999999997 69999999999999998877777788999999999999999999999999999999876544322


Q ss_pred             ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCc
Q 007283          225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT  304 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  304 (609)
                       +  ...|...|++++|+|....|+++|.||+|+|||....                                       
T Consensus       175 -~--~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---------------------------------------  212 (464)
T KOG0284|consen  175 -I--QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---------------------------------------  212 (464)
T ss_pred             -h--hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---------------------------------------
Confidence             1  1245689999999999999999999999999996410                                       


Q ss_pred             EEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEe
Q 007283          305 ISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSG  384 (609)
Q Consensus       305 i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (609)
                                .....+.||--.|.++++++. ..+++++|.|+.|++||..++.....                      
T Consensus       213 ----------kee~vL~GHgwdVksvdWHP~-kgLiasgskDnlVKlWDprSg~cl~t----------------------  259 (464)
T KOG0284|consen  213 ----------KEERVLRGHGWDVKSVDWHPT-KGLIASGSKDNLVKLWDPRSGSCLAT----------------------  259 (464)
T ss_pred             ----------chhheeccCCCCcceeccCCc-cceeEEccCCceeEeecCCCcchhhh----------------------
Confidence                      011345789999999999865 36999999999999998754321110                      


Q ss_pred             ccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEE
Q 007283          385 FDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII  464 (609)
Q Consensus       385 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~  464 (609)
                                                                                ...++..|..+.|+|++.+|++
T Consensus       260 ----------------------------------------------------------lh~HKntVl~~~f~~n~N~Llt  281 (464)
T KOG0284|consen  260 ----------------------------------------------------------LHGHKNTVLAVKFNPNGNWLLT  281 (464)
T ss_pred             ----------------------------------------------------------hhhccceEEEEEEcCCCCeeEE
Confidence                                                                      0012244778889999999999


Q ss_pred             EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC
Q 007283          465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV-SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS  543 (609)
Q Consensus       465 gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s  543 (609)
                      +|+|..+++||++  .+.+..++.+|+..|+++.|+|-. .+|.+|+.|+.+..|.+...+.......+|...|++++|+
T Consensus       282 ~skD~~~kv~DiR--~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~h  359 (464)
T KOG0284|consen  282 GSKDQSCKVFDIR--TMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYH  359 (464)
T ss_pred             ccCCceEEEEehh--HhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeecc
Confidence            9999999999997  344556788999999999999975 6888999999999999764443333345799999999999


Q ss_pred             CCCcEEEEEeCCCeEEEEEcCCCC
Q 007283          544 PNNSMVATGSLDTCVIIYEIDKPA  567 (609)
Q Consensus       544 ~d~~~l~s~s~D~~v~vw~~~~~~  567 (609)
                      |-|..|++|+.|.++++|.-.++.
T Consensus       360 PlGhil~tgsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  360 PLGHILATGSNDRTVRFWTRNRPG  383 (464)
T ss_pred             ccceeEeecCCCcceeeeccCCCC
Confidence            999999999999999999866544

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=5e-32  Score=242.44  Aligned_cols=287  Identities=19%  Similarity=0.267  Sum_probs=236.7

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      +++.||.+-|.|+++.|-.++++||++|++|+|||+.+++ ++..+++|..-|..+++|+---+|+++|+++   .++.|
T Consensus       145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~-LkltltGhi~~vr~vavS~rHpYlFs~gedk---~VKCw  220 (460)
T KOG0285|consen  145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ-LKLTLTGHIETVRGVAVSKRHPYLFSAGEDK---QVKCW  220 (460)
T ss_pred             hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe-EEEeecchhheeeeeeecccCceEEEecCCC---eeEEE
Confidence            3467999999999999999999999999999999999976 6678999999999999999999999999866   57888


Q ss_pred             EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283          131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                      +++.++.+..+-||-..|++++.+|... ++++||.|.++++||.++...+..+.||..+|..+.+.|-...+++|+.|+
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~  299 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS  299 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence            8888888888999999999999999987 699999999999999999999999999999999999999888899999999


Q ss_pred             cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE-
Q 007283          211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC-  289 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  289 (609)
                      +|++||...++...++.   .|+..|.+++.+|....+|++|.| .|+-|++..   +..++.+...     ..++-+. 
T Consensus       300 tvrlWDl~agkt~~tlt---~hkksvral~lhP~e~~fASas~d-nik~w~~p~---g~f~~nlsgh-----~~iintl~  367 (460)
T KOG0285|consen  300 TVRLWDLRAGKTMITLT---HHKKSVRALCLHPKENLFASASPD-NIKQWKLPE---GEFLQNLSGH-----NAIINTLS  367 (460)
T ss_pred             eEEEeeeccCceeEeee---cccceeeEEecCCchhhhhccCCc-cceeccCCc---cchhhccccc-----cceeeeee
Confidence            99999999998777663   689999999999999999999988 589999863   3333332211     1122222 


Q ss_pred             EEcCCeEEEEEcCCcEEEEeCCCCCCCce----eeeC---CCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          290 LWQNDFLVIVSLGGTISIFSANDLEKSPL----QLSG---HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~~~---h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                      ..+++++++++..|.+..|+....-....    ..+|   ....|.+.+|. ..+..++||..|.+|++|..+
T Consensus       368 ~nsD~v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fD-ktg~rlit~eadKtIk~~keD  439 (460)
T KOG0285|consen  368 VNSDGVLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFD-KTGSRLITGEADKTIKMYKED  439 (460)
T ss_pred             eccCceEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeec-ccCceEEeccCCcceEEEecc
Confidence            23467899999999999999765432211    1122   23356666654 455789999999999999654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.1e-31  Score=240.34  Aligned_cols=290  Identities=23%  Similarity=0.319  Sum_probs=239.7

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      ...+.+|.+.|.++++.|.+.+ |++|+.|+++++||..++++..++.||...|..+++|+--.++.+++.|+.|+.||.
T Consensus       144 ~rVi~gHlgWVr~vavdP~n~w-f~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  144 YRVISGHLGWVRSVAVDPGNEW-FATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             hhhhhhccceEEEEeeCCCcee-EEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            4467899999999999999876 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV  297 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (609)
                      +..+.|..+.   ||-+.|++++.+|.-..|++++.|.++|+||++...                               
T Consensus       223 e~nkvIR~Yh---GHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-------------------------------  268 (460)
T KOG0285|consen  223 EYNKVIRHYH---GHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-------------------------------  268 (460)
T ss_pred             hhhhhHHHhc---cccceeEEEeccccceeEEecCCcceEEEeeecccc-------------------------------
Confidence            9998887763   899999999999999999999999999999987310                               


Q ss_pred             EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283          298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE  377 (609)
Q Consensus       298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~  377 (609)
                                        ....+.||...|..+.+-+.+ ..++|||.|++|++||+..+...                 
T Consensus       269 ------------------~V~~l~GH~~~V~~V~~~~~d-pqvit~S~D~tvrlWDl~agkt~-----------------  312 (460)
T KOG0285|consen  269 ------------------SVHVLSGHTNPVASVMCQPTD-PQVITGSHDSTVRLWDLRAGKTM-----------------  312 (460)
T ss_pred             ------------------eEEEecCCCCcceeEEeecCC-CceEEecCCceEEEeeeccCcee-----------------
Confidence                              123567899999998876544 47899999999999986432100                 


Q ss_pred             CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283          378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP  457 (609)
Q Consensus       378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  457 (609)
                                                                                     ....+++..+.+++++|
T Consensus       313 ---------------------------------------------------------------~tlt~hkksvral~lhP  329 (460)
T KOG0285|consen  313 ---------------------------------------------------------------ITLTHHKKSVRALCLHP  329 (460)
T ss_pred             ---------------------------------------------------------------EeeecccceeeEEecCC
Confidence                                                                           00011223478889999


Q ss_pred             CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE--Eeee-----
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK--LKNM-----  530 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~-----  530 (609)
                      ....+|+++.|. |+-|++..+.+.  ..+.+|.+.|++++.+.|| ++++|+..+.+.+||-.++...  ....     
T Consensus       330 ~e~~fASas~dn-ik~w~~p~g~f~--~nlsgh~~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGS  405 (460)
T KOG0285|consen  330 KENLFASASPDN-IKQWKLPEGEFL--QNLSGHNAIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGS  405 (460)
T ss_pred             chhhhhccCCcc-ceeccCCccchh--hccccccceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCc
Confidence            999999998875 899999877654  3488999999999998776 5677889999999997765321  1111     


Q ss_pred             cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       531 ~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      ......|.+.+|...|..|+||..|++|++|.-+.
T Consensus       406 l~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  406 LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            12346799999999999999999999999998654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2e-31  Score=271.25  Aligned_cols=287  Identities=29%  Similarity=0.421  Sum_probs=232.1

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc-C
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW-D  133 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~  133 (609)
                      |...|.++.|||+|+++++++.|+++++|+.++.+ .+...+.+|...|..++|+|||+++++++++.   .+++|+. +
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~---tiriwd~~~  234 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDK---TLRIWDLKD  234 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCc---eEEEeeccC
Confidence            36789999999999999999999999999996655 23345678999999999999999999988765   4677777 4


Q ss_pred             CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283          134 SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI  213 (609)
Q Consensus       134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~  213 (609)
                      .+.++.++++|...|++++|+|++ ..+++|+.|++|++||.+++++...+.+|.+.|++++|+++|+.|++++.|+.++
T Consensus       235 ~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~  313 (456)
T KOG0266|consen  235 DGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIR  313 (456)
T ss_pred             CCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEE
Confidence            457899999999999999999999 5699999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE--
Q 007283          214 IYDGKTAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC--  289 (609)
Q Consensus       214 iwd~~~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  289 (609)
                      +||..++.  +...+....... .++++.|+|++.++++++.|+++++||+..   +.....+...... . ......  
T Consensus       314 vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~---~~~~~~~~~~~~~-~-~~~~~~~~  387 (456)
T KOG0266|consen  314 VWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRS---GKSVGTYTGHSNL-V-RCIFSPTL  387 (456)
T ss_pred             EEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccC---CcceeeecccCCc-c-eeEecccc
Confidence            99999998  344443222222 699999999999999999999999999973   3444444332221 1 011111  


Q ss_pred             EEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCC-CCCeEEEEEecCCCCEEEEEe--cCCcEEEEec
Q 007283          290 LWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGH-MKNVTALTVLNIDPKVILSSS--YDGLIVKWIQ  354 (609)
Q Consensus       290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~t~s--~dg~i~~W~~  354 (609)
                      ...+..+++++.|+.|++|+... ......+.+| ...+..+.++. ..+++++++  .|+.+++|..
T Consensus       388 ~~~~~~i~sg~~d~~v~~~~~~s-~~~~~~l~~h~~~~~~~~~~~~-~~~~~~s~s~~~d~~~~~w~~  453 (456)
T KOG0266|consen  388 STGGKLIYSGSEDGSVYVWDSSS-GGILQRLEGHSKAAVSDLSSHP-TENLIASSSFEGDGLIRLWKY  453 (456)
T ss_pred             cCCCCeEEEEeCCceEEEEeCCc-cchhhhhcCCCCCceeccccCC-CcCeeeecCcCCCceEEEecC
Confidence            12366899999999999999875 3344567889 77777777764 346888888  7999999943

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.3e-29  Score=250.47  Aligned_cols=457  Identities=19%  Similarity=0.266  Sum_probs=330.7

Q ss_pred             cCceeEEeecCCC--CeEEE-eCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283           16 RGRGILISGHPKS--NSILY-TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        16 ~~~~~~~~~~~~~--~~l~~-~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~   92 (609)
                      .+..+..-.||.-  |.|+- ...+.+.||++.+++.+..|.++...|+++.-+|-=..+|-|-.+|+|.|..+..++.+
T Consensus       158 ~~~~Ital~HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil  237 (910)
T KOG1539|consen  158 EGDFITALLHPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKIL  237 (910)
T ss_pred             cCCceeeEecchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEE
Confidence            3444777789873  44444 45689999999999999999999999999999999899999999999999999988765


Q ss_pred             eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                      . .|+...+.|+.++|.-||..++++|...+  .+-+|+++..+..... +.|.+.|..+.|-|..+ ++++.+.|..++
T Consensus       238 ~-sFk~d~g~VtslSFrtDG~p~las~~~~G--~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~ep-Vl~ta~~DnSlk  313 (910)
T KOG1539|consen  238 M-SFKQDWGRVTSLSFRTDGNPLLASGRSNG--DMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEP-VLVTAGADNSLK  313 (910)
T ss_pred             E-EEEccccceeEEEeccCCCeeEEeccCCc--eEEEEEcCCCeeeeeeeccccCCcccceecCCCc-eEeeccCCCcee
Confidence            3 56665689999999999999999886544  3557777766655544 48989999999999887 599999999999


Q ss_pred             EEeCCCC----ceeeeccCcccceEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCcc---------------ccccCcCCC
Q 007283          172 FYEGPPF----KFKLSHRGHSNFVNCVRFS-PDGSKFISVSSDKKGIIYDGKTADK---------------IGELSPEDG  231 (609)
Q Consensus       172 ~~~~~~~----~~~~~~~~h~~~v~~l~~s-~dg~~l~s~~~d~~i~iwd~~~~~~---------------~~~~~~~~~  231 (609)
                      +|-.+++    +..+.-.||..+..|+.|. .+|..+.+++.|++.+.++......               ........-
T Consensus       314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~  393 (910)
T KOG1539|consen  314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL  393 (910)
T ss_pred             EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence            8843322    2334446899999999998 6788999999999988876432111               111100000


Q ss_pred             CccceEEEEECCC-----CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEE
Q 007283          232 HKGSVYAVSWSPD-----GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTIS  306 (609)
Q Consensus       232 h~~~V~~l~~spd-----~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  306 (609)
                      --.+|..++|...     ...++..-.+...+.|+.+....|+..-..............++..+-+++.+.|...|.|-
T Consensus       394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id  473 (910)
T KOG1539|consen  394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID  473 (910)
T ss_pred             cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence            1135677777543     23444445578899999986555443211111111112222233344578899999999999


Q ss_pred             EEeCCCCCCCce--eeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEe
Q 007283          307 IFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSG  384 (609)
Q Consensus       307 ~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (609)
                      +|+.+..-....  .-+.|...|.++++.. .++.+++++.+|-++.|+.+....          +              
T Consensus       474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l----------~--------------  528 (910)
T KOG1539|consen  474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVL----------K--------------  528 (910)
T ss_pred             EEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcce----------e--------------
Confidence            999875432211  2357999999999754 457899999999999997653210          0              


Q ss_pred             ccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEE
Q 007283          385 FDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII  464 (609)
Q Consensus       385 ~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~  464 (609)
                                                                               ..+....++.++..+-....+|+
T Consensus       529 ---------------------------------------------------------~~l~l~~~~~~iv~hr~s~l~a~  551 (910)
T KOG1539|consen  529 ---------------------------------------------------------KSLRLGSSITGIVYHRVSDLLAI  551 (910)
T ss_pred             ---------------------------------------------------------eeeccCCCcceeeeeehhhhhhh
Confidence                                                                     00001112233333334456788


Q ss_pred             EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC
Q 007283          465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP  544 (609)
Q Consensus       465 gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~  544 (609)
                      +..|-.|+++|+.+...  ...+.+|.+.|++++|||||+.+++++.|++|++||+.+....  ....-...++.+.|||
T Consensus       552 ~~ddf~I~vvD~~t~kv--vR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lI--D~~~vd~~~~sls~SP  627 (910)
T KOG1539|consen  552 ALDDFSIRVVDVVTRKV--VREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLI--DGLLVDSPCTSLSFSP  627 (910)
T ss_pred             hcCceeEEEEEchhhhh--hHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCccee--eeEecCCcceeeEECC
Confidence            88999999999876654  3567899999999999999999999999999999999877542  2334577899999999


Q ss_pred             CCcEEEEEeCC-CeEEEEE
Q 007283          545 NNSMVATGSLD-TCVIIYE  562 (609)
Q Consensus       545 d~~~l~s~s~D-~~v~vw~  562 (609)
                      +|.+|||...| .-|.+|.
T Consensus       628 ngD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  628 NGDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             CCCEEEEEEecCceEEEEE
Confidence            99999999999 6799996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.5e-33  Score=257.18  Aligned_cols=295  Identities=16%  Similarity=0.255  Sum_probs=242.0

Q ss_pred             cccccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283           49 QVSIYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV  127 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  127 (609)
                      ....+.||+..|+++.|.| .+.+|+|+++|+.|+||++...+.+.+++.+|+.+|..++|+++|..+++++-+.   .+
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~---~l  282 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDR---FL  282 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecce---ee
Confidence            3456889999999999999 9999999999999999999986667788999999999999999999999998655   56


Q ss_pred             EEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283          128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS  207 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  207 (609)
                      ++|+.++|.++..|.. ...++++.|+|+++..|++|+.|+.|+.||.++++..+++..|.+.|..+.|-++|+++++.+
T Consensus       283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            7788778887766542 235678999999988899999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEE
Q 007283          208 SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLV  287 (609)
Q Consensus       208 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (609)
                      +|++++||+.+.+-.+..+...  +.-...++..+|++.+++..+.|+.|.++.+.........+.+..   ..+....+
T Consensus       362 Ddks~riWe~~~~v~ik~i~~~--~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feG---h~vaGys~  436 (503)
T KOG0282|consen  362 DDKSVRIWENRIPVPIKNIADP--EMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEG---HSVAGYSC  436 (503)
T ss_pred             cCccEEEEEcCCCccchhhcch--hhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcc---eeccCcee
Confidence            9999999999888766554322  333577999999999999999999999998653211111111111   11122223


Q ss_pred             EEEE--cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEe
Q 007283          288 GCLW--QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI  353 (609)
Q Consensus       288 ~~~~--~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~  353 (609)
                      .+.+  ++.++++|+.+|.+.+|+.+.. .....++.|.+.+..+.|++..+..++||+.||.|++|+
T Consensus       437 ~v~fSpDG~~l~SGdsdG~v~~wdwkt~-kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGDSDGKVNFWDWKTT-KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eEEEcCCCCeEEeecCCccEEEeechhh-hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            3444  4669999999999999998653 334567899999999999988788999999999999994

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.5e-29  Score=239.69  Aligned_cols=241  Identities=22%  Similarity=0.375  Sum_probs=218.5

Q ss_pred             cCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeE
Q 007283           16 RGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKK   94 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~   94 (609)
                      ..|+-.+.+||-.-+++..- .+.+-||+-++...+..+.--.-+|.+..|-+--+++++|+.|..|||++..+.+.. .
T Consensus        13 SdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV-~   91 (794)
T KOG0276|consen   13 SDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKV-K   91 (794)
T ss_pred             CCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceee-E
Confidence            44667999999998887664 357899999998888888877889999999999999999999999999999987643 5


Q ss_pred             EEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE
Q 007283           95 EFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY  173 (609)
Q Consensus        95 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~  173 (609)
                      .|..|+.-|++++.+|.--++++.+|+.   ++++|+|+.. .+..+|.||...|.+++|.|.++..||+++-|+++++|
T Consensus        92 ~FeAH~DyIR~iavHPt~P~vLtsSDDm---~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVW  168 (794)
T KOG0276|consen   92 TFEAHSDYIRSIAVHPTLPYVLTSSDDM---TIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVW  168 (794)
T ss_pred             EeeccccceeeeeecCCCCeEEecCCcc---EEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEE
Confidence            7999999999999999999999988765   6899999976 67789999999999999999999999999999999999


Q ss_pred             eCCCCceeeeccCcccceEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283          174 EGPPFKFKLSHRGHSNFVNCVRFSPDG--SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       174 ~~~~~~~~~~~~~h~~~v~~l~~s~dg--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                      ........+++.||...|+|+.|-+-|  .+|++|++|.+++|||.++..++.++   .||...|..+.|+|.-..++||
T Consensus       169 slgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TL---eGHt~Nvs~v~fhp~lpiiisg  245 (794)
T KOG0276|consen  169 SLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTL---EGHTNNVSFVFFHPELPIIISG  245 (794)
T ss_pred             EcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHh---hcccccceEEEecCCCcEEEEe
Confidence            998888889999999999999998866  48999999999999999999999988   4999999999999999999999


Q ss_pred             eCCCcEEEeecc
Q 007283          252 SADKSAKVWDIS  263 (609)
Q Consensus       252 s~d~~i~iwd~~  263 (609)
                      |.||++|||...
T Consensus       246 sEDGTvriWhs~  257 (794)
T KOG0276|consen  246 SEDGTVRIWNSK  257 (794)
T ss_pred             cCCccEEEecCc
Confidence            999999999864

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=100.00  E-value=6.8e-32  Score=230.17  Aligned_cols=289  Identities=22%  Similarity=0.344  Sum_probs=237.4

Q ss_pred             EEEecCCccEEEEEEeeC--CCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          139 GEFDGHSRRVLSCAFKPS--RPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~--~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      .+..+|+++|..++|+|-  ..+.+++++.|+.=.+-+.+++..+.+|.||++.|....+..+..+-|+++.|-+.++||
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~   87 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWD   87 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhh
Confidence            345799999999999863  235688999999888888999999999999999999999999888889999999999999


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL  296 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (609)
                      .-++..+..+    .|+.-|.+++|+.|..+|++|+.+.-+|+||++..                               
T Consensus        88 a~tgdelhsf----~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p-------------------------------  132 (334)
T KOG0278|consen   88 AVTGDELHSF----EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRP-------------------------------  132 (334)
T ss_pred             hhhhhhhhhh----hhhheeeeEEecccchhhhccchHHHhhhhhccCC-------------------------------
Confidence            9999988877    58889999999999999999999999999997521                               


Q ss_pred             EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283          297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI  376 (609)
Q Consensus       297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~  376 (609)
                                       ..++.++.+|.+.|..+.|+..+ +.|++.+.|++||+||..++.                  
T Consensus       133 -----------------~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt------------------  176 (334)
T KOG0278|consen  133 -----------------KAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGT------------------  176 (334)
T ss_pred             -----------------CCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCc------------------
Confidence                             12345667899999999988554 577788999999999864321                  


Q ss_pred             CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                                                                                     ....++...+++++.++
T Consensus       177 ---------------------------------------------------------------~v~sL~~~s~VtSlEvs  193 (334)
T KOG0278|consen  177 ---------------------------------------------------------------EVQSLEFNSPVTSLEVS  193 (334)
T ss_pred             ---------------------------------------------------------------EEEEEecCCCCcceeec
Confidence                                                                           11223334568889999


Q ss_pred             CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc
Q 007283          457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR  536 (609)
Q Consensus       457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~  536 (609)
                      +||+++.++ .-+.|.+||...-.+....   .-.--|.+.+++|+..+++.|+.|..++.||..+++..-..-++|.++
T Consensus       194 ~dG~ilTia-~gssV~Fwdaksf~~lKs~---k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gp  269 (334)
T KOG0278|consen  194 QDGRILTIA-YGSSVKFWDAKSFGLLKSY---KMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGP  269 (334)
T ss_pred             cCCCEEEEe-cCceeEEeccccccceeec---cCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCc
Confidence            999977665 5678999997643332111   123357888999999999999999999999998887654445899999


Q ss_pred             eEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          537 INCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       537 i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      |.|+.|||||...|+||.||+|++|.+..
T Consensus       270 VhcVrFSPdGE~yAsGSEDGTirlWQt~~  298 (334)
T KOG0278|consen  270 VHCVRFSPDGELYASGSEDGTIRLWQTTP  298 (334)
T ss_pred             eEEEEECCCCceeeccCCCceEEEEEecC
Confidence            99999999999999999999999999864

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=4.6e-30  Score=281.37  Aligned_cols=300  Identities=17%  Similarity=0.246  Sum_probs=224.2

Q ss_pred             cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283           53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  132 (609)
                      +.+|.+.|.+++|+|+|++||+|+.|++|+||+..........  .+                                 
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~--~~---------------------------------  523 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRD--IH---------------------------------  523 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccc--cc---------------------------------
Confidence            3458999999999999999999999999999997542100000  00                                 


Q ss_pred             CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcC-CCCEEEEEeCCCc
Q 007283          133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP-DGSKFISVSSDKK  211 (609)
Q Consensus       133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~d~~  211 (609)
                         .....+. +...|.+++|+|.....+++++.|+.+++||..+.+....+.+|...|++++|+| ++.+|++|+.|++
T Consensus       524 ---~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~  599 (793)
T PLN00181        524 ---YPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGS  599 (793)
T ss_pred             ---cceEEec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCE
Confidence               0001111 2346788899886555799999999999999998888888999999999999997 7889999999999


Q ss_pred             EEEEeCCCCccccccCcCCCCccceEEEEEC-CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283          212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWS-PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL  290 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s-pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (609)
                      +++||..++..+..+.    +...|.++.|+ +++.+|++|+.|+.|++||++...   .                    
T Consensus       600 v~iWd~~~~~~~~~~~----~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~---~--------------------  652 (793)
T PLN00181        600 VKLWSINQGVSIGTIK----TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK---L--------------------  652 (793)
T ss_pred             EEEEECCCCcEEEEEe----cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC---c--------------------
Confidence            9999999888776653    33579999995 579999999999999999985210   0                    


Q ss_pred             EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccce
Q 007283          291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI  370 (609)
Q Consensus       291 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~  370 (609)
                                               ....+.+|...|.++.|.  ++..+++++.|++|++|+.....            
T Consensus       653 -------------------------~~~~~~~h~~~V~~v~f~--~~~~lvs~s~D~~ikiWd~~~~~------------  693 (793)
T PLN00181        653 -------------------------PLCTMIGHSKTVSYVRFV--DSSTLVSSSTDNTLKLWDLSMSI------------  693 (793)
T ss_pred             -------------------------cceEecCCCCCEEEEEEe--CCCEEEEEECCCEEEEEeCCCCc------------
Confidence                                     011234677778888775  33677888888888888542100            


Q ss_pred             eEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCce
Q 007283          371 KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPV  450 (609)
Q Consensus       371 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (609)
                                                                                                      
T Consensus       694 --------------------------------------------------------------------------------  693 (793)
T PLN00181        694 --------------------------------------------------------------------------------  693 (793)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe--
Q 007283          451 TASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK--  528 (609)
Q Consensus       451 ~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~--  528 (609)
                           ++.        .           ..  ....+.+|...+.+++|+|++.++++|+.|+++++|+.........  
T Consensus       694 -----~~~--------~-----------~~--~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~  747 (793)
T PLN00181        694 -----SGI--------N-----------ET--PLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK  747 (793)
T ss_pred             -----ccc--------C-----------Cc--ceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe
Confidence                 000        0           00  0123567888999999999999999999999999999654321110  


Q ss_pred             ----------eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          529 ----------NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       529 ----------~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                                ....|...|.+++|+|++.+|++|+.||+|+||++
T Consensus       748 ~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        748 FKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence                      01234567999999999999999999999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.5e-31  Score=242.27  Aligned_cols=289  Identities=22%  Similarity=0.343  Sum_probs=232.8

Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC---CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP---PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      ..+..|+++|+-+.|+++|.+ +|+++.|.+..+|+..   ..+...++.||.++|..+.||||.++|++++.|..+.+|
T Consensus       218 qil~~htdEVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  218 QILQDHTDEVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLW  296 (519)
T ss_pred             hhHhhCCCcEEEEEEcCCCee-EeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeec
Confidence            456799999999999999986 9999999999999642   256678889999999999999999999999999999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF  295 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (609)
                      |+.++++...+..  +|...+.+++|.|||..+++|+.|+++..||+++.    ..                        
T Consensus       297 Dv~tgd~~~~y~~--~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn----~~------------------------  346 (519)
T KOG0293|consen  297 DVDTGDLRHLYPS--GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN----IL------------------------  346 (519)
T ss_pred             cCCcchhhhhccc--CcCCCcceeEEccCCceeEecCCCCcEEEecCCcc----hh------------------------
Confidence            9999998877742  56788999999999999999999999999997521    00                        


Q ss_pred             EEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee
Q 007283          296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA  375 (609)
Q Consensus       296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~  375 (609)
                                                                            .-|.-               +     
T Consensus       347 ------------------------------------------------------~~W~g---------------v-----  352 (519)
T KOG0293|consen  347 ------------------------------------------------------GNWEG---------------V-----  352 (519)
T ss_pred             ------------------------------------------------------hcccc---------------c-----
Confidence                                                                  00100               0     


Q ss_pred             eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEE
Q 007283          376 IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI  455 (609)
Q Consensus       376 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (609)
                                                                                  +          ...+.++++
T Consensus       353 ------------------------------------------------------------r----------~~~v~dlai  362 (519)
T KOG0293|consen  353 ------------------------------------------------------------R----------DPKVHDLAI  362 (519)
T ss_pred             ------------------------------------------------------------c----------cceeEEEEE
Confidence                                                                        0          012566788


Q ss_pred             cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC
Q 007283          456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA  535 (609)
Q Consensus       456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~  535 (609)
                      ++||+++++-..|..|++++.....-  .. +.....+|++...|.|++++.+.-.+.++.+||++...... ...+|..
T Consensus       363 t~Dgk~vl~v~~d~~i~l~~~e~~~d--r~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~-kY~Ghkq  438 (519)
T KOG0293|consen  363 TYDGKYVLLVTVDKKIRLYNREARVD--RG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVR-KYFGHKQ  438 (519)
T ss_pred             cCCCcEEEEEecccceeeechhhhhh--hc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHH-Hhhcccc
Confidence            99999999999999999998864322  22 22345689999999999999999999999999998554432 3456654


Q ss_pred             c--eEEEEECC-CCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc--CCCeEEEEeCCCcEEEEEccC
Q 007283          536 R--INCLAWSP-NNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT--DEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       536 ~--i~~l~~s~-d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      .  |-.-+|-. +.+++|+||.|+.|.+|+-..+  ..+..+.||++.|++|+|.  +.++++|+|.||+|++|..++
T Consensus       439 ~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  439 GHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cceEEEeccCCCCcceEEecCCCceEEEEEccCC--ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            3  33445543 5689999999999999997764  4577889999999999999  457899999999999998764

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=3.2e-32  Score=253.39  Aligned_cols=292  Identities=22%  Similarity=0.331  Sum_probs=234.3

Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      .+.++.+|+..|.++.|.|....++++||.|+.|++|+... +++.++|.||..+|..++|+++|..|++++.|+.+++|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            45678899999999999996566799999999999999765 78999999999999999999999999999999999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND  294 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (609)
                      |.++|+++..+.    -...++++.|+||+ ..+++|+.|+.|+.||++.   +++.++                     
T Consensus       286 DtETG~~~~~f~----~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs---~kvvqe---------------------  337 (503)
T KOG0282|consen  286 DTETGQVLSRFH----LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRS---GKVVQE---------------------  337 (503)
T ss_pred             ccccceEEEEEe----cCCCceeeecCCCCCcEEEEecCCCcEEEEeccc---hHHHHH---------------------
Confidence            999999988773    23467899999998 7899999999999999873   333222                     


Q ss_pred             eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283          295 FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA  374 (609)
Q Consensus       295 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~  374 (609)
                                               ...|-+.|..+.|.+ .+..+++.+.|+++++|+.......+...          
T Consensus       338 -------------------------Yd~hLg~i~~i~F~~-~g~rFissSDdks~riWe~~~~v~ik~i~----------  381 (503)
T KOG0282|consen  338 -------------------------YDRHLGAILDITFVD-EGRRFISSSDDKSVRIWENRIPVPIKNIA----------  381 (503)
T ss_pred             -------------------------HHhhhhheeeeEEcc-CCceEeeeccCccEEEEEcCCCccchhhc----------
Confidence                                     223666777788775 45789999999999999643221000000          


Q ss_pred             eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE
Q 007283          375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA  454 (609)
Q Consensus       375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (609)
                                                                                           ....+...++.
T Consensus       382 ---------------------------------------------------------------------~~~~hsmP~~~  392 (503)
T KOG0282|consen  382 ---------------------------------------------------------------------DPEMHTMPCLT  392 (503)
T ss_pred             ---------------------------------------------------------------------chhhccCccee
Confidence                                                                                 00012356788


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEecCCe-eeeeEEEecCCC--ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeec
Q 007283          455 IAPDGSEAIIGSQDGKLRVYSIRGDT-LTEEAVLEKHRG--AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML  531 (609)
Q Consensus       455 ~sp~g~~l~~gs~dg~i~iw~~~~~~-~~~~~~~~~h~~--~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  531 (609)
                      .+|++.+++.-+-|..|.+|.+.... +..++.+++|..  --..+.|||||.+|++|+.||.+.+||..+... +..+.
T Consensus       393 ~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-~~~lk  471 (503)
T KOG0282|consen  393 LHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-VSKLK  471 (503)
T ss_pred             cCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh-hhccc
Confidence            99999999999999999999865322 233456777853  356789999999999999999999999766543 44578


Q ss_pred             CCCCceEEEEECCCC-cEEEEEeCCCeEEEEE
Q 007283          532 YHTARINCLAWSPNN-SMVATGSLDTCVIIYE  562 (609)
Q Consensus       532 ~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~  562 (609)
                      .|+..+..+.|+|.. ..+||++.||.|++|+
T Consensus       472 ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  472 AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            899999999999965 5799999999999996

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=6.2e-30  Score=280.36  Aligned_cols=307  Identities=21%  Similarity=0.347  Sum_probs=227.7

Q ss_pred             CCeEEEEeCCCCceeee-----ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ccccccCcCCCCccceE
Q 007283          167 DFLVNFYEGPPFKFKLS-----HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA----DKIGELSPEDGHKGSVY  237 (609)
Q Consensus       167 d~~i~~~~~~~~~~~~~-----~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~V~  237 (609)
                      ++..++|+....+....     +.+|...|.+++|+|+|++||+|+.|+.|+||+....    ..+........+...|.
T Consensus       457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~  536 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS  536 (793)
T ss_pred             hhhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee
Confidence            44556666554433322     3458999999999999999999999999999996532    11110000012346789


Q ss_pred             EEEECC-CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCC
Q 007283          238 AVSWSP-DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKS  316 (609)
Q Consensus       238 ~l~~sp-d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  316 (609)
                      +++|+| ++.+|++++.|++|++||+..   ++..                                             
T Consensus       537 ~l~~~~~~~~~las~~~Dg~v~lWd~~~---~~~~---------------------------------------------  568 (793)
T PLN00181        537 GICWNSYIKSQVASSNFEGVVQVWDVAR---SQLV---------------------------------------------  568 (793)
T ss_pred             eEEeccCCCCEEEEEeCCCeEEEEECCC---CeEE---------------------------------------------
Confidence            999987 478999999999999999752   1111                                             


Q ss_pred             ceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccC
Q 007283          317 PLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQG  396 (609)
Q Consensus       317 ~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  396 (609)
                       ..+.+|...|.+++|++.++.++++|+.|++|++|+...+..          +.                         
T Consensus       569 -~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~----------~~-------------------------  612 (793)
T PLN00181        569 -TEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS----------IG-------------------------  612 (793)
T ss_pred             -EEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE----------EE-------------------------
Confidence             234568899999999866678999999999999997643210          00                         


Q ss_pred             CccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEE-cCCCCEEEEEeCCCcEEEEE
Q 007283          397 DQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI-APDGSEAIIGSQDGKLRVYS  475 (609)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-sp~g~~l~~gs~dg~i~iw~  475 (609)
                                                                    .+.....+.++.+ +++|.++++|+.||.|++||
T Consensus       613 ----------------------------------------------~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD  646 (793)
T PLN00181        613 ----------------------------------------------TIKTKANICCVQFPSESGRSLAFGSADHKVYYYD  646 (793)
T ss_pred             ----------------------------------------------EEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence                                                          0000123556666 46799999999999999999


Q ss_pred             ecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC-----ceEEeeecCCCCceEEEEECCCCcEEE
Q 007283          476 IRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR-----EVKLKNMLYHTARINCLAWSPNNSMVA  550 (609)
Q Consensus       476 ~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~~h~~~i~~l~~s~d~~~l~  550 (609)
                      ++.... ....+.+|...|.++.|. ++.++++++.|+++++||+...     ...+..+.+|...+++++|+|++++||
T Consensus       647 ~~~~~~-~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~la  724 (793)
T PLN00181        647 LRNPKL-PLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIA  724 (793)
T ss_pred             CCCCCc-cceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEE
Confidence            975432 234567899999999997 7889999999999999998642     123445778999999999999999999


Q ss_pred             EEeCCCeEEEEEcCCCCCccee------------EeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          551 TGSLDTCVIIYEIDKPASSRMT------------IKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       551 s~s~D~~v~vw~~~~~~~~~~~------------~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      +|+.|++|++|+...+. ....            ....|...|.+++|+ ++.+|++++.||.|++|++
T Consensus       725 sgs~D~~v~iw~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        725 TGSETNEVFVYHKAFPM-PVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EEeCCCEEEEEECCCCC-ceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence            99999999999975432 1110            012355679999999 7789999999999999987

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=4.4e-30  Score=261.41  Aligned_cols=290  Identities=26%  Similarity=0.420  Sum_probs=230.4

Q ss_pred             eeccC-cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283          182 LSHRG-HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK  258 (609)
Q Consensus       182 ~~~~~-h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~  258 (609)
                      ..+.+ |...|.++.|+|+|+.+++++.|+.+++|+....+  ....+   .+|...|..++|+||++++++++.|++|+
T Consensus       152 ~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l---~~h~~~v~~~~fs~d~~~l~s~s~D~tir  228 (456)
T KOG0266|consen  152 QTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLREL---SGHTRGVSDVAFSPDGSYLLSGSDDKTLR  228 (456)
T ss_pred             eeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccc---cccccceeeeEECCCCcEEEEecCCceEE
Confidence            33434 47889999999999999999999999999986666  33333   58999999999999999999999999999


Q ss_pred             EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283          259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK  338 (609)
Q Consensus       259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  338 (609)
                      +||+..  .+..                                              ...+.+|...|.+++|++.. +
T Consensus       229 iwd~~~--~~~~----------------------------------------------~~~l~gH~~~v~~~~f~p~g-~  259 (456)
T KOG0266|consen  229 IWDLKD--DGRN----------------------------------------------LKTLKGHSTYVTSVAFSPDG-N  259 (456)
T ss_pred             EeeccC--CCeE----------------------------------------------EEEecCCCCceEEEEecCCC-C
Confidence            999832  1111                                              23466899999999998765 8


Q ss_pred             EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283          339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL  418 (609)
Q Consensus       339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (609)
                      ++++|+.|++|++|+..++..                                                           
T Consensus       260 ~i~Sgs~D~tvriWd~~~~~~-----------------------------------------------------------  280 (456)
T KOG0266|consen  260 LLVSGSDDGTVRIWDVRTGEC-----------------------------------------------------------  280 (456)
T ss_pred             EEEEecCCCcEEEEeccCCeE-----------------------------------------------------------
Confidence            999999999999997653210                                                           


Q ss_pred             cCCcEEEEEecccEEEeeCCeeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCc--eE
Q 007283          419 HYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGA--VS  495 (609)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~--i~  495 (609)
                                            ...+ .+..++++++|+++|+++++++.|+.|++||+.++.+.....+.++...  ++
T Consensus       281 ----------------------~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~  338 (456)
T KOG0266|consen  281 ----------------------VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVT  338 (456)
T ss_pred             ----------------------EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCcee
Confidence                                  0011 1234689999999999999999999999999988774323445566555  99


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc---eEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCccee
Q 007283          496 VIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR---INCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMT  572 (609)
Q Consensus       496 ~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~---i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~  572 (609)
                      ++.|+|++.+++++..|+.+++||+...... ....+|...   +.+...++.++++.+|+.|+.|.+|++....  ...
T Consensus       339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~--~~~  415 (456)
T KOG0266|consen  339 SVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGG--ILQ  415 (456)
T ss_pred             EEEECCCCcEEEEecCCCeEEEEEccCCcce-eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccc--hhh
Confidence            9999999999999999999999998766543 345566664   4445567899999999999999999998632  234


Q ss_pred             Eeccc-cCCeEEEEEc-CCCeEEEEe--CCCcEEEEEcc
Q 007283          573 IKGAH-LGGVYGLAFT-DEHSVVSSG--EDACVRVWRLT  607 (609)
Q Consensus       573 ~~~~h-~~~v~~~~~s-~~~~l~s~s--~D~~i~~W~~~  607 (609)
                      .+.+| ...|..+++. ..+++++++  .|+.+++|...
T Consensus       416 ~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  416 RLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             hhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            45678 8889999999 667888887  79999999865

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.98  E-value=1.9e-30  Score=234.29  Aligned_cols=309  Identities=21%  Similarity=0.258  Sum_probs=231.4

Q ss_pred             cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 007283          143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG---SKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~d~~i~iwd~~~  219 (609)
                      .|.+-|.++...+  . .|.+|++|+.+++|+.. ++......||.++|.++++-...   ..|++++.|.++++|.++.
T Consensus       103 ~hdDWVSsv~~~~--~-~IltgsYDg~~riWd~~-Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~  178 (423)
T KOG0313|consen  103 LHDDWVSSVKGAS--K-WILTGSYDGTSRIWDLK-GKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV  178 (423)
T ss_pred             cchhhhhhhcccC--c-eEEEeecCCeeEEEecC-CceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence            4666777776663  2 49999999999999965 77888899999999977764332   2599999999999998877


Q ss_pred             Ccccc-ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283          220 ADKIG-ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI  298 (609)
Q Consensus       220 ~~~~~-~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (609)
                      ++... ......||.+.|.+++..++|.++++||.|.+|+||+..... .............             +... 
T Consensus       179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~-~~~~E~~s~~rrk-------------~~~~-  243 (423)
T KOG0313|consen  179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDE-EDELESSSNRRRK-------------KQKR-  243 (423)
T ss_pred             chhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCc-cccccccchhhhh-------------hhhh-
Confidence            66432 222335999999999999999999999999999999932110 0000000000000             0000 


Q ss_pred             EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCC
Q 007283          299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE  378 (609)
Q Consensus       299 ~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (609)
                               -.......+...+.||+..|.++.|.+  +..++++|.|.+|+.||+.++...                  
T Consensus       244 ---------~~~~~~r~P~vtl~GHt~~Vs~V~w~d--~~v~yS~SwDHTIk~WDletg~~~------------------  294 (423)
T KOG0313|consen  244 ---------EKEGGTRTPLVTLEGHTEPVSSVVWSD--ATVIYSVSWDHTIKVWDLETGGLK------------------  294 (423)
T ss_pred             ---------hhcccccCceEEecccccceeeEEEcC--CCceEeecccceEEEEEeecccce------------------
Confidence                     000011234457899999999999976  478999999999999987543210                  


Q ss_pred             cEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC
Q 007283          379 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD  458 (609)
Q Consensus       379 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  458 (609)
                                                                                     ..+.....+.+++.+|.
T Consensus       295 ---------------------------------------------------------------~~~~~~ksl~~i~~~~~  311 (423)
T KOG0313|consen  295 ---------------------------------------------------------------STLTTNKSLNCISYSPL  311 (423)
T ss_pred             ---------------------------------------------------------------eeeecCcceeEeecccc
Confidence                                                                           00111234678889999


Q ss_pred             CCEEEEEeCCCcEEEEEecCCe-eeeeEEEecCCCceEEEEECCCC-CEEEEEeCCCeEEEEEccCCceEEeeecCCCCc
Q 007283          459 GSEAIIGSQDGKLRVYSIRGDT-LTEEAVLEKHRGAVSVIRYSPDV-SMFASGDVNREAIVWDRVSREVKLKNMLYHTAR  536 (609)
Q Consensus       459 g~~l~~gs~dg~i~iw~~~~~~-~~~~~~~~~h~~~i~~v~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~  536 (609)
                      .+++|+|+.|..||+||-+.+. ......+.+|++.|.++.|+|.. ..|+||+.|+++++||+++..-.+-.+.+|.+.
T Consensus       312 ~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK  391 (423)
T KOG0313|consen  312 SKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK  391 (423)
T ss_pred             cceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce
Confidence            9999999999999999976543 22356789999999999999986 468899999999999998877566678899999


Q ss_pred             eEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          537 INCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       537 i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      |.++.|. ++..+++|+.|++|+++.-
T Consensus       392 vl~vdW~-~~~~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  392 VLSVDWN-EGGLIVSGGADNKLRIFKG  417 (423)
T ss_pred             EEEEecc-CCceEEeccCcceEEEecc
Confidence            9999998 6778999999999999864

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=6.2e-29  Score=240.91  Aligned_cols=205  Identities=30%  Similarity=0.537  Sum_probs=177.0

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      ..+.+|+++|++++|+|++++|++++.|+.|++|+..+++. ...+..|...+..+.|+|+++++++++.+.   .+++|
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~---~i~i~   78 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAASADGTYLASGSSDK---TIRLW   78 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCc-EEEEecCCcceeEEEECCCCCEEEEEcCCC---eEEEE
Confidence            35678999999999999999999999999999999987653 345667888899999999998888877533   46777


Q ss_pred             EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283          131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                      +.+.+..+..+..|...|.++.|+|++. .+++++.|+.+.+|+....+....+..|...+.++.|+|++.++++++.|+
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~  157 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG  157 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCC-EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence            7777677888889999999999999965 577888899999999988888888888999999999999998888888899


Q ss_pred             cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .+.+||...++.+..+.   .|...|.++.|+|+++.+++++.|+.+++||+.
T Consensus       158 ~i~i~d~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  207 (289)
T cd00200         158 TIKLWDLRTGKCVATLT---GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLS  207 (289)
T ss_pred             cEEEEEccccccceeEe---cCccccceEEECCCcCEEEEecCCCcEEEEECC
Confidence            99999998877766553   678899999999999999999999999999975

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=8.9e-29  Score=239.81  Aligned_cols=287  Identities=30%  Similarity=0.464  Sum_probs=231.3

Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK  218 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~  218 (609)
                      ..+.+|..+|.+++|+|++.. +++++.|+.+.+|+..+.+....+.+|...+..+.|+|+++.|++++.|+.+.+|+..
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~-l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKL-LATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCE-EEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            346789999999999999874 8889999999999988877777788899999999999999999999999999999998


Q ss_pred             CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283          219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI  298 (609)
Q Consensus       219 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (609)
                      .++.+..+   ..|...|.++.|+|+++++++++.|+.+++||+..   .+..                           
T Consensus        82 ~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~~---------------------------  128 (289)
T cd00200          82 TGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVET---GKCL---------------------------  128 (289)
T ss_pred             cccceEEE---eccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCC---cEEE---------------------------
Confidence            87665554   36788999999999999998888899999999852   1111                           


Q ss_pred             EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCC
Q 007283          299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE  378 (609)
Q Consensus       299 ~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (609)
                                         ..+..|...+.++.+++. +.++++++.|+.+++|+......          +        
T Consensus       129 -------------------~~~~~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~~----------~--------  170 (289)
T cd00200         129 -------------------TTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKC----------V--------  170 (289)
T ss_pred             -------------------EEeccCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEcccccc----------c--------
Confidence                               112246667888888754 56788888899999997542100          0        


Q ss_pred             cEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC
Q 007283          379 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD  458 (609)
Q Consensus       379 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  458 (609)
                                 ..+                                                   ..+..++.+++++|+
T Consensus       171 -----------~~~---------------------------------------------------~~~~~~i~~~~~~~~  188 (289)
T cd00200         171 -----------ATL---------------------------------------------------TGHTGEVNSVAFSPD  188 (289)
T ss_pred             -----------eeE---------------------------------------------------ecCccccceEEECCC
Confidence                       000                                                   001124778899999


Q ss_pred             CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283          459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN  538 (609)
Q Consensus       459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~  538 (609)
                      ++.+++++.|+.|++|+++.+..  ...+..|...|.++.|+|++.++++++.|+.+++||..+.+. ...+..|...|.
T Consensus       189 ~~~l~~~~~~~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~~~~~~i~  265 (289)
T cd00200         189 GEKLLSSSSDGTIKLWDLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-VQTLSGHTNSVT  265 (289)
T ss_pred             cCEEEEecCCCcEEEEECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-EEEccccCCcEE
Confidence            99999999999999999976544  344557888999999999999999999899999999876543 334557889999


Q ss_pred             EEEECCCCcEEEEEeCCCeEEEEE
Q 007283          539 CLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       539 ~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                      +++|+|++++|++++.|+.|++|+
T Consensus       266 ~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         266 SLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             EEEECCCCCEEEEecCCCeEEecC
Confidence            999999999999999999999995

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.97  E-value=2.4e-26  Score=222.88  Aligned_cols=489  Identities=16%  Similarity=0.169  Sum_probs=323.0

Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec-ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC
Q 007283           58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL-SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT  136 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  136 (609)
                      ..|.++||+.+.+.||.+-.||.|.||.+...-.+...+.++ +..|..++|+ +|.+|+++|-+.   .+.-|+..+.+
T Consensus        26 s~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg---~i~EwDl~~lk  101 (691)
T KOG2048|consen   26 SEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSG---SITEWDLHTLK  101 (691)
T ss_pred             cceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCc---eEEEEecccCc
Confidence            359999999999999999999999999998877776677766 4579999999 555888877443   24456666777


Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee--eeccCcccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK--LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII  214 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~i  214 (609)
                      ....+....+.|++++.+|.+. .++.|..||.+.+.++.+.+..  ..+...+..|.++.|+|++..|++|+.||.|++
T Consensus       102 ~~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  102 QKYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             eeEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            7788888889999999999986 5888889998888888887654  446667789999999999999999999999999


Q ss_pred             EeCCCCcccc-----ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE
Q 007283          215 YDGKTADKIG-----ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC  289 (609)
Q Consensus       215 wd~~~~~~~~-----~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      ||...+..+.     .....++-+--|.++.|-.++ .|++|-..|+|++||...   +.+++.+....   .+....+.
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~---gTLiqS~~~h~---adVl~Lav  253 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIF---GTLIQSHSCHD---ADVLALAV  253 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccC---cchhhhhhhhh---cceeEEEE
Confidence            9999888665     111112234457888887665 688888899999999763   44444333221   11223344


Q ss_pred             EEcCCeEEEEEcCCcEEEEeCCCCCC---CceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc--ccceecc
Q 007283          290 LWQNDFLVIVSLGGTISIFSANDLEK---SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG--YGGKLQR  364 (609)
Q Consensus       290 ~~~~~~~~~~~~~g~i~~~~~~~~~~---~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~--~~~~~~~  364 (609)
                      ..+++.+++++.|+.+-.|.......   .......|...|.++++..   ..+++|+.|.++.+-....-  .......
T Consensus       254 ~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~---~~l~sgG~d~~l~i~~s~~~~~~~h~~~~  330 (691)
T KOG2048|consen  254 ADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIE---NALISGGRDFTLAICSSREFKNMDHRQKN  330 (691)
T ss_pred             cCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeec---ceEEecceeeEEEEccccccCchhhhccc
Confidence            44568999999999988887654422   2233457888999999875   38999999999987643320  0000000


Q ss_pred             cc-ccceeEeeeeCCcEEEEeccceEEEEeccCCcc----ccccccc--cC-C-CCceeEeeccCCcEEEEEecccEEEe
Q 007283          365 KE-NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQC----GYANSID--IG-S-QPKDLSVALHYPELVLVSTDSGVVLL  435 (609)
Q Consensus       365 ~~-~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~----~~~~~~~--~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (609)
                      .+ .+.....+ ..+.++..-.+..+..|.+.....    .+..-..  .. . .....++.+ .+.+++.++-....++
T Consensus       331 ~~p~~~~v~~a-~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~st~~~~~iy  408 (691)
T KOG2048|consen  331 LFPASDRVSVA-PENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAISTVSRTKIY  408 (691)
T ss_pred             cccccceeecC-ccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEeeccceEEE
Confidence            00 00111111 122222222222233332222100    0000000  00 0 111122222 2345555554444443


Q ss_pred             e--CCeeeEEecc------CCceeEEEEcCCCCEEEEEe-CCCcEEEEEecCCeeeeeE--EEecCCCceEEEEECCCCC
Q 007283          436 R--GAEVVSTINL------RFPVTASAIAPDGSEAIIGS-QDGKLRVYSIRGDTLTEEA--VLEKHRGAVSVIRYSPDVS  504 (609)
Q Consensus       436 ~--~~~~~~~~~~------~~~~~~~~~sp~g~~l~~gs-~dg~i~iw~~~~~~~~~~~--~~~~h~~~i~~v~~s~~~~  504 (609)
                      +  ....+.....      ..+...+.|+-|+..++..+ .+..+.+++.......+..  ..+.....|..+..||+|+
T Consensus       409 ~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~  488 (691)
T KOG2048|consen  409 RLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGN  488 (691)
T ss_pred             EeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCC
Confidence            2  1112222211      13456677888888887777 6788888887665432211  1224567899999999999


Q ss_pred             EEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEcC
Q 007283          505 MFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       505 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~-d~~~l~s~s~D~~v~vw~~~  564 (609)
                      ++|+.+.++.|.+|++++.+.... ...-+..||+++|+| +-..|+.+..|+.|.=||++
T Consensus       489 yiaa~~t~g~I~v~nl~~~~~~~l-~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~  548 (691)
T KOG2048|consen  489 YIAAISTRGQIFVYNLETLESHLL-KVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIE  548 (691)
T ss_pred             EEEEEeccceEEEEEcccceeecc-hhccCcceeeeeccccccCcEEEEecCCeEEEEecc
Confidence            999999999999999988765432 124458899999995 55678999999999999984

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.1e-30  Score=232.83  Aligned_cols=282  Identities=22%  Similarity=0.337  Sum_probs=220.3

Q ss_pred             cceeecCCCccCcCceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEE
Q 007283            4 LAETYTCVPSTERGRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVR   82 (609)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~   82 (609)
                      +..|+-|-.....| +..++...  +.++++ .+++|.|||..+......+.||.+.|-|+.|.  .+.|+|||.|.||+
T Consensus       186 ~~~rinc~Se~skg-VYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvr  260 (499)
T KOG0281|consen  186 LLQRINCRSENSKG-VYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVR  260 (499)
T ss_pred             eeeeecCCcccCCc-eEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEE
Confidence            45667776665554 45666652  346665 36888888888877778888888888888875  45888888888888


Q ss_pred             EEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEE
Q 007283           83 IWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIA  162 (609)
Q Consensus        83 vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~  162 (609)
                      |||+++++.+.                                              ++-+|...|..+.|+..   .++
T Consensus       261 vWDv~tge~l~----------------------------------------------tlihHceaVLhlrf~ng---~mv  291 (499)
T KOG0281|consen  261 VWDVNTGEPLN----------------------------------------------TLIHHCEAVLHLRFSNG---YMV  291 (499)
T ss_pred             EEeccCCchhh----------------------------------------------HHhhhcceeEEEEEeCC---EEE
Confidence            88888876432                                              23467777777777653   599


Q ss_pred             EecCCCeEEEEeCCCC---ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283          163 TCGEDFLVNFYEGPPF---KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV  239 (609)
Q Consensus       163 t~~~d~~i~~~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l  239 (609)
                      +|+.|+.+.+||....   .+.+.+.||...|+.+.|+  .+++++++.|.++++|+..+.+.+.++.   +|...|-|+
T Consensus       292 tcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~---gHkRGIACl  366 (499)
T KOG0281|consen  292 TCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN---GHKRGIACL  366 (499)
T ss_pred             EecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhh---cccccceeh
Confidence            9999999999996543   2445688999999999995  4599999999999999999999998884   899999888


Q ss_pred             EECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCC---
Q 007283          240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKS---  316 (609)
Q Consensus       240 ~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~---  316 (609)
                      .+  .++++++||.|.+||+||+.   .|+....+.     +.++.+-+.-++++.+++++-||.|++|++.....+   
T Consensus       367 QY--r~rlvVSGSSDntIRlwdi~---~G~cLRvLe-----GHEeLvRciRFd~krIVSGaYDGkikvWdl~aaldpra~  436 (499)
T KOG0281|consen  367 QY--RDRLVVSGSSDNTIRLWDIE---CGACLRVLE-----GHEELVRCIRFDNKRIVSGAYDGKIKVWDLQAALDPRAP  436 (499)
T ss_pred             hc--cCeEEEecCCCceEEEEecc---ccHHHHHHh-----chHHhhhheeecCceeeeccccceEEEEecccccCCccc
Confidence            76  68999999999999999987   455554443     234555666788999999999999999998755433   


Q ss_pred             -----ceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283          317 -----PLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG  357 (609)
Q Consensus       317 -----~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~  357 (609)
                           ...+..|++.|-.+.|.   ...++++++|-+|.+|+...+
T Consensus       437 ~~~~Cl~~lv~hsgRVFrLQFD---~fqIvsssHddtILiWdFl~~  479 (499)
T KOG0281|consen  437 ASTLCLRTLVEHSGRVFRLQFD---EFQIISSSHDDTILIWDFLNG  479 (499)
T ss_pred             ccchHHHhhhhccceeEEEeec---ceEEEeccCCCeEEEEEcCCC
Confidence                 22456799999999884   368999999999999987654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.97  E-value=1.5e-29  Score=228.57  Aligned_cols=309  Identities=20%  Similarity=0.342  Sum_probs=224.8

Q ss_pred             CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC---eEEEEeCCCcEEEeec
Q 007283          186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK---QVLTASADKSAKVWDI  262 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~---~l~s~s~d~~i~iwd~  262 (609)
                      -|.+.|.++...  +++|++|+.||.+++||. .|+.+.++   .||.++|.+++|.--..   .|+++|.|.++++|..
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~---~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTI---VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEE---ecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            478889888887  669999999999999995 56666665   38999999888865433   5999999999999987


Q ss_pred             ccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEE
Q 007283          263 SEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS  342 (609)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t  342 (609)
                      +....   +                                          ....+...||...|.++... .++..+++
T Consensus       177 ~~~~~---~------------------------------------------~~~~~~~~GHk~~V~sVsv~-~sgtr~~S  210 (423)
T KOG0313|consen  177 NVGEN---K------------------------------------------VKALKVCRGHKRSVDSVSVD-SSGTRFCS  210 (423)
T ss_pred             cCchh---h------------------------------------------hhHHhHhcccccceeEEEec-CCCCeEEe
Confidence            53210   0                                          00112234899999999875 45678999


Q ss_pred             EecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCcc-ccccccccCCCCceeEeeccCC
Q 007283          343 SSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQC-GYANSIDIGSQPKDLSVALHYP  421 (609)
Q Consensus       343 ~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  421 (609)
                      ||.|.++.+|+........        ...          ...         +..+. .....   .             
T Consensus       211 gS~D~~lkiWs~~~~~~~~--------~E~----------~s~---------~rrk~~~~~~~---~-------------  247 (423)
T KOG0313|consen  211 GSWDTMLKIWSVETDEEDE--------LES----------SSN---------RRRKKQKREKE---G-------------  247 (423)
T ss_pred             ecccceeeecccCCCcccc--------ccc----------cch---------hhhhhhhhhhc---c-------------
Confidence            9999999999722110000        000          000         00000 00000   0             


Q ss_pred             cEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC
Q 007283          422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP  501 (609)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~  501 (609)
                                   .....+.....|+.+|.++.+++ ...+.+++.|.+|+.||+..+.......   -...++|++++|
T Consensus       248 -------------~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~---~~ksl~~i~~~~  310 (423)
T KOG0313|consen  248 -------------GTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT---TNKSLNCISYSP  310 (423)
T ss_pred             -------------cccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee---cCcceeEeeccc
Confidence                         00001111223567899998887 6779999999999999998776533222   245799999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCce--EEeeecCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEcCCCCCcceeEecccc
Q 007283          502 DVSMFASGDVNREAIVWDRVSREV--KLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMTIKGAHL  578 (609)
Q Consensus       502 ~~~~l~s~s~d~~v~iwd~~~~~~--~~~~~~~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~  578 (609)
                      ...++++|+.|+-+++||.+++.-  ....+.+|+..|.++.|+|-+ .+|++|+.|+++++||+...... +....+|.
T Consensus       311 ~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p-lydI~~h~  389 (423)
T KOG0313|consen  311 LSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP-LYDIAGHN  389 (423)
T ss_pred             ccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc-ceeeccCC
Confidence            999999999999999999877543  334578999999999999965 67899999999999999865533 44556799


Q ss_pred             CCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          579 GGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       579 ~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ..|.++.|..+..|+|||+|+.|+++.-.
T Consensus       390 DKvl~vdW~~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  390 DKVLSVDWNEGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ceEEEEeccCCceEEeccCcceEEEeccc
Confidence            99999999999999999999999998643

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.3e-30  Score=227.05  Aligned_cols=288  Identities=22%  Similarity=0.357  Sum_probs=238.5

Q ss_pred             cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee-------eEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283           55 EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL-------KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV  127 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~-------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  127 (609)
                      |.+.-+.|.+|||||+||++|+.||-|.||+..+++.-       ...|..+..+|.++.||.|.+.|++...+.   -+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDG---kI  287 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDG---KI  287 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCC---cE
Confidence            44556899999999999999999999999999887631       124556788999999999999888765322   26


Q ss_pred             EEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEE
Q 007283          128 RAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~  206 (609)
                      ++|...++.++.-|. .|+..|+++.|+.|+.. +.+++.|.++++.-...+++..+++||..+|+...|++||..++++
T Consensus       288 KvWri~tG~ClRrFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  288 KVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEEEEecchHHHHhhhhhccCeeEEEEccCcch-hhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence            677777898888886 89999999999999985 9999999999999999999999999999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccce
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDM  285 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  285 (609)
                      +.||++++|+.++.+++.++.+. +..-.|+++..-|.+ ..++.+-..+++.+-++.    ++..+.+......+-+.+
T Consensus       367 SsDgtvkvW~~KtteC~~Tfk~~-~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q----GQvVrsfsSGkREgGdFi  441 (508)
T KOG0275|consen  367 SSDGTVKVWHGKTTECLSTFKPL-GTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ----GQVVRSFSSGKREGGDFI  441 (508)
T ss_pred             cCCccEEEecCcchhhhhhccCC-CCcccceeEEEcCCCCceEEEEcCCCeEEEEecc----ceEEeeeccCCccCCceE
Confidence            99999999999999999988764 456689999888854 578888889999999985    677777765544333333


Q ss_pred             EEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEe
Q 007283          286 LVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI  353 (609)
Q Consensus       286 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~  353 (609)
                      .......++.+++.+.|+.+++|..... .....+.-|.+.|..++-++ ..+++++-+.||.+++|.
T Consensus       442 ~~~lSpkGewiYcigED~vlYCF~~~sG-~LE~tl~VhEkdvIGl~HHP-HqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  442 NAILSPKGEWIYCIGEDGVLYCFSVLSG-KLERTLPVHEKDVIGLTHHP-HQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEecCCCcEEEEEccCcEEEEEEeecC-ceeeeeecccccccccccCc-ccchhhhhcccchhhhcC
Confidence            3444455789999999999999986543 33456788999999998664 447899999999999993

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=5.9e-29  Score=218.69  Aligned_cols=293  Identities=20%  Similarity=0.380  Sum_probs=224.0

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC------------C-----ceeeEEEeecccceeEEEECCCCCE
Q 007283           52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHN------------D-----HVLKKEFRVLSGRIDDLQWSPDGLR  114 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~------------~-----~~~~~~~~~~~~~v~~~~~spdg~~  114 (609)
                      .+..|+.+..+.+|||||.++|+|+.|..|+|.|++.            +     ..+.+++=.|..+|..+.|+|-...
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            3568999999999999999999999999999999971            1     1344556668889999999999877


Q ss_pred             EEEEECCCCcceEEEEEcCCCCeeEEE--ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee---ccCccc
Q 007283          115 IVACGDGKGKSLVRAFMWDSGTNVGEF--DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS---HRGHSN  189 (609)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~---~~~h~~  189 (609)
                      |++.+.+.   .++++++.+...-..+  -....+|.+++|||.|.+ ++.|..--++++||+.+.++...   -.+|..
T Consensus       187 LiS~srD~---tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGef-llvgTdHp~~rlYdv~T~QcfvsanPd~qht~  262 (430)
T KOG0640|consen  187 LISGSRDN---TVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEF-LLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG  262 (430)
T ss_pred             EEeccCCC---eEEEEecccHHHHHHHHHhhccceeeeEeecCCCce-EEEecCCCceeEEeccceeEeeecCccccccc
Confidence            77755433   5778887754221111  134568999999999996 66666667899999998877554   357999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCc-cceEEEEECCCCCeEEEEeCCCcEEEeecccCCCC
Q 007283          190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK-GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG  268 (609)
Q Consensus       190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~  268 (609)
                      .|+++.+++.|++.++|+.||.|+|||.-.++++.++.  .+|. ..|.++.|..+|+|+++.+.|..+++|++.   .+
T Consensus       263 ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~--~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~---t~  337 (430)
T KOG0640|consen  263 AITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIG--NAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS---TG  337 (430)
T ss_pred             ceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHH--hhcCCceeeeEEEccCCeEEeecCCcceeeeeeec---CC
Confidence            99999999999999999999999999999999998885  3565 479999999999999999999999999997   46


Q ss_pred             ceEEEeccCCCCCccceEEEEEEc--CCeEEEE-EcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEec
Q 007283          269 KLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIV-SLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY  345 (609)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~  345 (609)
                      +.++.++..+..+-........++  .++++.- -..+.+..|+.+..........||.+.+..+.-++ ...-++||+.
T Consensus       338 R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP-~~p~FmTcsd  416 (430)
T KOG0640|consen  338 RMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSP-VEPAFMTCSD  416 (430)
T ss_pred             ceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCC-CCCceeeecc
Confidence            777777655432211111222233  2333332 23466778887766555555678999998887554 4457999999


Q ss_pred             CCcEEEEec
Q 007283          346 DGLIVKWIQ  354 (609)
Q Consensus       346 dg~i~~W~~  354 (609)
                      |..+|.|..
T Consensus       417 D~raRFWyr  425 (430)
T KOG0640|consen  417 DFRARFWYR  425 (430)
T ss_pred             cceeeeeee
Confidence            999999943

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.2e-29  Score=219.66  Aligned_cols=343  Identities=21%  Similarity=0.298  Sum_probs=246.5

Q ss_pred             EEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283          161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS  240 (609)
Q Consensus       161 i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~  240 (609)
                      |++.-.++++.      +...+.+.||++.|..++-......+.+++.|.+.+||.++++.++.++   .||.+.|+++.
T Consensus       127 ivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y---~GH~GSVNsik  197 (481)
T KOG0300|consen  127 IVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATY---TGHTGSVNSIK  197 (481)
T ss_pred             heeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeee---cccccceeeEE
Confidence            55544554432      2455678899999999988777778999999999999999999998776   49999999999


Q ss_pred             ECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE--cCCeEEEEEcCC-cEEEEeCCCCCCCc
Q 007283          241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW--QNDFLVIVSLGG-TISIFSANDLEKSP  317 (609)
Q Consensus       241 ~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g-~i~~~~~~~~~~~~  317 (609)
                      |+|.+.+++++|.|++..||.....- ......-......  ++. ..+..  +.+.--....|| +|+        .+.
T Consensus       198 fh~s~~L~lTaSGD~taHIW~~av~~-~vP~~~a~~~hSs--EeE-~e~sDe~~~d~d~~~~sD~~tiR--------vPl  265 (481)
T KOG0300|consen  198 FHNSGLLLLTASGDETAHIWKAAVNW-EVPSNNAPSDHSS--EEE-EEHSDEHNRDTDSSEKSDGHTIR--------VPL  265 (481)
T ss_pred             eccccceEEEccCCcchHHHHHhhcC-cCCCCCCCCCCCc--hhh-hhcccccccccccccccCCceee--------eee
Confidence            99999999999999999999742110 0000000000000  000 00000  000000001111 111        233


Q ss_pred             eeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCC
Q 007283          318 LQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGD  397 (609)
Q Consensus       318 ~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  397 (609)
                      ..+.||...|.+..|.. .++.++|++.|.+-.+|+..++......                                  
T Consensus       266 ~~ltgH~~vV~a~dWL~-gg~Q~vTaSWDRTAnlwDVEtge~v~~L----------------------------------  310 (481)
T KOG0300|consen  266 MRLTGHRAVVSACDWLA-GGQQMVTASWDRTANLWDVETGEVVNIL----------------------------------  310 (481)
T ss_pred             eeeeccccceEehhhhc-CcceeeeeeccccceeeeeccCceeccc----------------------------------
Confidence            56789999998888774 4578999999999999987654211100                                  


Q ss_pred             ccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec
Q 007283          398 QCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR  477 (609)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~  477 (609)
                                                            .+        +..+.+-++.+|..+++++.+.|.+.|+||.+
T Consensus       311 --------------------------------------tG--------Hd~ELtHcstHptQrLVvTsSrDtTFRLWDFR  344 (481)
T KOG0300|consen  311 --------------------------------------TG--------HDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR  344 (481)
T ss_pred             --------------------------------------cC--------cchhccccccCCcceEEEEeccCceeEeccch
Confidence                                                  00        11234455668999999999999999999997


Q ss_pred             CCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCe
Q 007283          478 GDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTC  557 (609)
Q Consensus       478 ~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~  557 (609)
                       +.+....++++|...|+++.|..|. .+++||.|.++++||+.+..-.+.. ......++.++++..++.+|.--.+..
T Consensus       345 -eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsplAT-IRtdS~~NRvavs~g~~iIAiPhDNRq  421 (481)
T KOG0300|consen  345 -EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSPLAT-IRTDSPANRVAVSKGHPIIAIPHDNRQ  421 (481)
T ss_pred             -hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCccee-eecCCccceeEeecCCceEEeccCCce
Confidence             4555678899999999999998665 5789999999999999876655543 346778999999998889999999999


Q ss_pred             EEEEEcCCCCCccee--EeccccCCeEEEEEcCCC---eEEEEeCCCcEEEEEccC
Q 007283          558 VIIYEIDKPASSRMT--IKGAHLGGVYGLAFTDEH---SVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       558 v~vw~~~~~~~~~~~--~~~~h~~~v~~~~~s~~~---~l~s~s~D~~i~~W~~~~  608 (609)
                      |++||+......++.  ...+|.+.|.|++|++++   .|+|+|-|+.+.-|++..
T Consensus       422 vRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~  477 (481)
T KOG0300|consen  422 VRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT  477 (481)
T ss_pred             EEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence            999999743333332  456899999999999654   589999999999999865

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.8e-28  Score=203.42  Aligned_cols=282  Identities=20%  Similarity=0.306  Sum_probs=215.2

Q ss_pred             eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      ..+..|.++|..+.|+-||++.++++.|.++++|++..+.++.+++   +|...|..++.+.|+..|++++.|+.+.+||
T Consensus        11 ~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYs---ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen   11 SILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYS---GHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             eeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeec---CCCceeeeccccccccccccCCCCceEEEEE
Confidence            3456789999999999999999999999999999999999998874   8999999999999999999999999999999


Q ss_pred             cccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283          262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL  341 (609)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  341 (609)
                      ++.   ++..                                              ..+.||...|..+.|+. ....++
T Consensus        88 V~T---Gkv~----------------------------------------------Rr~rgH~aqVNtV~fNe-esSVv~  117 (307)
T KOG0316|consen   88 VNT---GKVD----------------------------------------------RRFRGHLAQVNTVRFNE-ESSVVA  117 (307)
T ss_pred             ccc---Ceee----------------------------------------------eecccccceeeEEEecC-cceEEE
Confidence            973   3332                                              23457889999999874 447899


Q ss_pred             EEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCC
Q 007283          342 SSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP  421 (609)
Q Consensus       342 t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (609)
                      +|+.|.++++|+.........+        .+..                                              
T Consensus       118 SgsfD~s~r~wDCRS~s~ePiQ--------ilde----------------------------------------------  143 (307)
T KOG0316|consen  118 SGSFDSSVRLWDCRSRSFEPIQ--------ILDE----------------------------------------------  143 (307)
T ss_pred             eccccceeEEEEcccCCCCccc--------hhhh----------------------------------------------
Confidence            9999999999976433211111        0000                                              


Q ss_pred             cEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC
Q 007283          422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP  501 (609)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~  501 (609)
                                              ....+.++.++  ++.+++||-||++|.||++.+.+..    .....+|+|++||+
T Consensus       144 ------------------------a~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~s----Dy~g~pit~vs~s~  193 (307)
T KOG0316|consen  144 ------------------------AKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLSS----DYFGHPITSVSFSK  193 (307)
T ss_pred             ------------------------hcCceeEEEec--ccEEEeeccCCcEEEEEeecceeeh----hhcCCcceeEEecC
Confidence                                    01124444443  6789999999999999998876532    33456999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc--eEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccC
Q 007283          502 DVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR--INCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLG  579 (609)
Q Consensus       502 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~--i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~  579 (609)
                      |++....++.|+++++.|..++++ ++..++|...  =..++++....++++||.||.|.+||+-...  .+.-+..|+.
T Consensus       194 d~nc~La~~l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~--~~sk~~~~~~  270 (307)
T KOG0316|consen  194 DGNCSLASSLDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDET--QISKLSVVST  270 (307)
T ss_pred             CCCEEEEeeccceeeecccchhHH-HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccce--eeeeeccCCc
Confidence            999999999999999999877765 4456677643  3566788889999999999999999997543  2333455666


Q ss_pred             C-eEEEEEcC-CCeEEEEeCCCcEEEE
Q 007283          580 G-VYGLAFTD-EHSVVSSGEDACVRVW  604 (609)
Q Consensus       580 ~-v~~~~~s~-~~~l~s~s~D~~i~~W  604 (609)
                      . |.++++.+ ...++++. ++.+..|
T Consensus       271 v~v~dl~~hp~~~~f~~A~-~~~~~~~  296 (307)
T KOG0316|consen  271 VIVTDLSCHPTMDDFITAT-GHGDLFW  296 (307)
T ss_pred             eeEEeeecccCccceeEec-CCceece
Confidence            5 78888874 23344333 3345555

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.1e-27  Score=202.74  Aligned_cols=285  Identities=20%  Similarity=0.261  Sum_probs=227.4

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      +..+.++.+.|..+.|.-+|.+ .++||.|.++++|+...+.++.++.||...|..++.+.|+..|++++.|+.+.+||+
T Consensus        10 ~~~l~~~qgaV~avryN~dGnY-~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen   10 LSILDCAQGAVRAVRYNVDGNY-CLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             ceeecccccceEEEEEccCCCE-EEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            4567889999999999999986 889999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV  297 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (609)
                      .+|+.+..+   .+|.+.|+.+.|..+...+++||.|.++|+||-+.. ..+.++.                        
T Consensus        89 ~TGkv~Rr~---rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~-s~ePiQi------------------------  140 (307)
T KOG0316|consen   89 NTGKVDRRF---RGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSR-SFEPIQI------------------------  140 (307)
T ss_pred             ccCeeeeec---ccccceeeEEEecCcceEEEeccccceeEEEEcccC-CCCccch------------------------
Confidence            999999887   489999999999999999999999999999996531 1111111                        


Q ss_pred             EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283          298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE  377 (609)
Q Consensus       298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~  377 (609)
                                            +..-...|.++...   ...|++||.||++|.++...+.                   
T Consensus       141 ----------------------ldea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~-------------------  176 (307)
T KOG0316|consen  141 ----------------------LDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGT-------------------  176 (307)
T ss_pred             ----------------------hhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecce-------------------
Confidence                                  11223455555543   3689999999999988653221                   


Q ss_pred             CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283          378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP  457 (609)
Q Consensus       378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  457 (609)
                                                                                     +..-.+..|++++.+++
T Consensus       177 ---------------------------------------------------------------l~sDy~g~pit~vs~s~  193 (307)
T KOG0316|consen  177 ---------------------------------------------------------------LSSDYFGHPITSVSFSK  193 (307)
T ss_pred             ---------------------------------------------------------------eehhhcCCcceeEEecC
Confidence                                                                           00011246899999999


Q ss_pred             CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceE--EEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVS--VIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA  535 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~--~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~  535 (609)
                      |++...+++-|++||+.|-.++++.  +..++|...=.  ...++....++++||.||.+++||+.......+ +..|..
T Consensus       194 d~nc~La~~l~stlrLlDk~tGklL--~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk-~~~~~~  270 (307)
T KOG0316|consen  194 DGNCSLASSLDSTLRLLDKETGKLL--KSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISK-LSVVST  270 (307)
T ss_pred             CCCEEEEeeccceeeecccchhHHH--HHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeee-eccCCc
Confidence            9999999999999999999888763  56778876533  345778889999999999999999987765443 444555


Q ss_pred             c-eEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283          536 R-INCLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       536 ~-i~~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                      . |+.++++|--.-+.++.. +.+.+|-
T Consensus       271 v~v~dl~~hp~~~~f~~A~~-~~~~~~~  297 (307)
T KOG0316|consen  271 VIVTDLSCHPTMDDFITATG-HGDLFWY  297 (307)
T ss_pred             eeEEeeecccCccceeEecC-Cceecee
Confidence            5 899999997766666654 3455564

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=2.1e-24  Score=209.54  Aligned_cols=493  Identities=16%  Similarity=0.161  Sum_probs=324.3

Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-eEEEecC-CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-VGEFDGH-SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP  177 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h-~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~  177 (609)
                      ..+|.++|||.+...|++.-.   ...+-+|....+-. ...+.++ .+.|.+++|.+.+  ++-+.+.++.|.-||.-+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt---~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~--RLFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRT---DGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGG--RLFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeecc---CCcEEEEccCCCceeeEEEecCCCCceeeEEEccCC--eEEeecCCceEEEEeccc
Confidence            457999999999988776432   23456666555432 3345566 4579999999766  588889999999999999


Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA  257 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i  257 (609)
                      .+....+..-.+.|++++.+|.+..++.|++||.++..+...++....-. ....++.|.+++|+|++..++.|+.||.|
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~-l~rq~sRvLslsw~~~~~~i~~Gs~Dg~I  178 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRS-LMRQKSRVLSLSWNPTGTKIAGGSIDGVI  178 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEee-cccccceEEEEEecCCccEEEecccCceE
Confidence            98888888888999999999999999999999988888877666543322 23457899999999999999999999999


Q ss_pred             EEeecccCCCCceEEEeccCCCCC-ccceEEEEEE-cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC
Q 007283          258 KVWDISEDNHGKLKKTLTPSGSGG-VDDMLVGCLW-QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI  335 (609)
Q Consensus       258 ~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  335 (609)
                      ++||+..++... +.+....+... -.-.+....+ .++.++++...|++.+|+..... .......|...|.+++..+ 
T Consensus       179 riwd~~~~~t~~-~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~G~V~FWd~~~gT-LiqS~~~h~adVl~Lav~~-  255 (691)
T KOG2048|consen  179 RIWDVKSGQTLH-IITMQLDRLSKREPTIVWSVLFLRDSTIASGDSAGTVTFWDSIFGT-LIQSHSCHDADVLALAVAD-  255 (691)
T ss_pred             EEEEcCCCceEE-EeeecccccccCCceEEEEEEEeecCcEEEecCCceEEEEcccCcc-hhhhhhhhhcceeEEEEcC-
Confidence            999997543221 11111111111 1112222222 47799999999999999976432 2345677999999999865 


Q ss_pred             CCCEEEEEecCCcEEEEecCcccc---c-eeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCC
Q 007283          336 DPKVILSSSYDGLIVKWIQGIGYG---G-KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP  411 (609)
Q Consensus       336 ~~~~~~t~s~dg~i~~W~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  411 (609)
                      ++..+.+++.|+.|..+.+..+..   . .....+...+++++..+..+.+++.|..+..-....-....  +......+
T Consensus       256 ~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~~~~~~--h~~~~~~p  333 (691)
T KOG2048|consen  256 NEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIENALISGGRDFTLAICSSREFKNMD--HRQKNLFP  333 (691)
T ss_pred             CCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecceEEecceeeEEEEccccccCchh--hhcccccc
Confidence            446899999999998886654422   1 11223455677888877788888888776654332211111  11111111


Q ss_pred             -ceeEeeccCCcEEEEEecccEEEeeCCee----------eEEec--cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283          412 -KDLSVALHYPELVLVSTDSGVVLLRGAEV----------VSTIN--LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG  478 (609)
Q Consensus       412 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~--~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~  478 (609)
                       ...........+++.-.+.++.+|+-+..          +..+.  -..-+++.+++|+|++++.+.- .+.++|.++.
T Consensus       334 ~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~-~~~~iy~L~~  412 (691)
T KOG2048|consen  334 ASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV-SRTKIYRLQP  412 (691)
T ss_pred             ccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec-cceEEEEecc
Confidence             11111122224444444556666542211          11122  2345889999999999999864 4578888876


Q ss_pred             CeeeeeEEEe---cCCCceEEEEECCCCCEEEEEe-CCCeEEEEEccCCceEE-eee--cCCCCceEEEEECCCCcEEEE
Q 007283          479 DTLTEEAVLE---KHRGAVSVIRYSPDVSMFASGD-VNREAIVWDRVSREVKL-KNM--LYHTARINCLAWSPNNSMVAT  551 (609)
Q Consensus       479 ~~~~~~~~~~---~h~~~i~~v~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~-~~~--~~h~~~i~~l~~s~d~~~l~s  551 (609)
                      .........+   ...-....+.|+-|+..+...+ .+..+.+.+..+...+. +.+  ..-...|..+..||||+|||.
T Consensus       413 ~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa  492 (691)
T KOG2048|consen  413 DPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAA  492 (691)
T ss_pred             CcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEE
Confidence            5432222221   2233567888998888777777 66777777765543221 111  123456999999999999999


Q ss_pred             EeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-C-CCeEEEEeCCCcEEEEEc
Q 007283          552 GSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-D-EHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       552 ~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~-~~~l~s~s~D~~i~~W~~  606 (609)
                      .+.++.|.+|++..... . .+...-...|++.+|+ + ...|+-+-+|+-+.=+++
T Consensus       493 ~~t~g~I~v~nl~~~~~-~-~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi  547 (691)
T KOG2048|consen  493 ISTRGQIFVYNLETLES-H-LLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI  547 (691)
T ss_pred             EeccceEEEEEccccee-e-cchhccCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence            99999999999976431 1 1111223678999998 3 345665556666666655

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=7.4e-29  Score=211.67  Aligned_cols=284  Identities=24%  Similarity=0.388  Sum_probs=219.1

Q ss_pred             EeecccceeEEEECC---CCCEEEEEE-CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           96 FRVLSGRIDDLQWSP---DGLRIVACG-DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        96 ~~~~~~~v~~~~~sp---dg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                      -.+|..+|..++|||   ||-+|++.. |++.  +  +..-+++.-+++|.+|.+.|+++.+..+-. +.|+++.|.+-+
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~p--m--lr~g~tgdwigtfeghkgavw~~~l~~na~-~aasaaadftak   84 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKP--M--LRNGDTGDWIGTFEGHKGAVWSATLNKNAT-RAASAAADFTAK   84 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCc--h--hccCCCCCcEEeeeccCcceeeeecCchhh-hhhhhcccchhh
Confidence            457899999999997   787777654 3332  3  345567788999999999999999987654 689999999999


Q ss_pred             EEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283          172 FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       172 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                      +||.-++.....| .|+-.|..++|+.|.+.|++|+.++.++|+|.+..+.  ......+|++.|..+.|....+.|++.
T Consensus        85 vw~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~A--pp~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   85 VWDAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKA--PPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCC--CchhhcCCCCcceeEEEeccCceEEee
Confidence            9998877666555 4777899999999999999999999999999876553  233346899999999999988889999


Q ss_pred             eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEE
Q 007283          252 SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALT  331 (609)
Q Consensus       252 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~  331 (609)
                      +.|++||+||.+   .+...+++..                                               ...|.++.
T Consensus       162 add~tVRLWD~r---Tgt~v~sL~~-----------------------------------------------~s~VtSlE  191 (334)
T KOG0278|consen  162 ADDKTVRLWDHR---TGTEVQSLEF-----------------------------------------------NSPVTSLE  191 (334)
T ss_pred             ccCCceEEEEec---cCcEEEEEec-----------------------------------------------CCCCccee
Confidence            999999999987   3444443321                                               12344555


Q ss_pred             EecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCC
Q 007283          332 VLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP  411 (609)
Q Consensus       332 ~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  411 (609)
                      ++..  ..++|...-+.|..|+.+.-                                                      
T Consensus       192 vs~d--G~ilTia~gssV~Fwdaksf------------------------------------------------------  215 (334)
T KOG0278|consen  192 VSQD--GRILTIAYGSSVKFWDAKSF------------------------------------------------------  215 (334)
T ss_pred             eccC--CCEEEEecCceeEEeccccc------------------------------------------------------
Confidence            5432  35667777788888865320                                                      


Q ss_pred             ceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCC
Q 007283          412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR  491 (609)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~  491 (609)
                                                 .+++...+...|.+..++|+...+++|+.|..++-||..++.-... ..++|.
T Consensus       216 ---------------------------~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~-~nkgh~  267 (334)
T KOG0278|consen  216 ---------------------------GLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS-YNKGHF  267 (334)
T ss_pred             ---------------------------cceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee-cccCCC
Confidence                                       1112222334477778899999999999999999999987753221 148999


Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283          492 GAVSVIRYSPDVSMFASGDVNREAIVWDRV  521 (609)
Q Consensus       492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~  521 (609)
                      ++|.||.|||||...|+||.||++|+|-..
T Consensus       268 gpVhcVrFSPdGE~yAsGSEDGTirlWQt~  297 (334)
T KOG0278|consen  268 GPVHCVRFSPDGELYASGSEDGTIRLWQTT  297 (334)
T ss_pred             CceEEEEECCCCceeeccCCCceEEEEEec
Confidence            999999999999999999999999999743

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=3.8e-28  Score=207.98  Aligned_cols=280  Identities=21%  Similarity=0.332  Sum_probs=212.5

Q ss_pred             EEEEECCC--CCeEEEE------eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc---CCeEEEEEcCCcE
Q 007283          237 YAVSWSPD--GKQVLTA------SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ---NDFLVIVSLGGTI  305 (609)
Q Consensus       237 ~~l~~spd--~~~l~s~------s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~i  305 (609)
                      +++.|||-  +++.+..      ...|++.|-++...........+.      ..+..+...|+   .+++++++.||++
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d------~~D~LfdV~Wse~~e~~~~~a~GDGSL   85 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYD------TEDGLFDVAWSENHENQVIAASGDGSL   85 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeee------cccceeEeeecCCCcceEEEEecCceE
Confidence            57889983  3332222      235888888885322222223322      23445566676   4578899999999


Q ss_pred             EEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEec
Q 007283          306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGF  385 (609)
Q Consensus       306 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (609)
                      ++|+......+...++.|..+|.++.+....+..++++|.|++|++|+.+.....+...                     
T Consensus        86 rl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~---------------------  144 (311)
T KOG0277|consen   86 RLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN---------------------  144 (311)
T ss_pred             EEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec---------------------
Confidence            99998777777788899999999999987777888999999999999764321100000                     


Q ss_pred             cceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEE
Q 007283          386 DNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAII  464 (609)
Q Consensus       386 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~  464 (609)
                                                                                 .+...|...+++| .+..+++
T Consensus       145 -----------------------------------------------------------gh~~~Iy~a~~sp~~~nlfas  165 (311)
T KOG0277|consen  145 -----------------------------------------------------------GHNSCIYQAAFSPHIPNLFAS  165 (311)
T ss_pred             -----------------------------------------------------------CCccEEEEEecCCCCCCeEEE
Confidence                                                                       0112355566777 5678999


Q ss_pred             EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC-CCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC
Q 007283          465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP-DVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS  543 (609)
Q Consensus       465 gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~-~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s  543 (609)
                      +|.|+++++||++....  ...+..|...|.|..|+. |-..+++|+.|+.||.||+.+.+.++.++.+|.-.|..++||
T Consensus       166 ~Sgd~~l~lwdvr~~gk--~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~S  243 (311)
T KOG0277|consen  166 ASGDGTLRLWDVRSPGK--FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFS  243 (311)
T ss_pred             ccCCceEEEEEecCCCc--eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecC
Confidence            99999999999975432  234788999999999985 467899999999999999988877788889999999999999


Q ss_pred             CCC-cEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc--CCCeEEEEeCCCcEEEEE
Q 007283          544 PNN-SMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT--DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       544 ~d~-~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~l~s~s~D~~i~~W~  605 (609)
                      |.. ..||+++.|-++++||...+- ..+.....|+.-|..+.||  +...++++|.|..+.+|+
T Consensus       244 ph~~~lLaSasYDmT~riw~~~~~d-s~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  244 PHHASLLASASYDMTVRIWDPERQD-SAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             cchhhHhhhccccceEEecccccch-hhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            965 689999999999999987543 2334445699999999999  678999999999999998

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=224.32  Aligned_cols=313  Identities=20%  Similarity=0.283  Sum_probs=223.5

Q ss_pred             CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----cccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD----KIGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      +......+.+|...|+++++.|.|..|++|+.|-+|++||+..-.    ....+.+...  ..|+++.|++.|..|++.+
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~--h~i~sl~ys~Tg~~iLvvs  233 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCET--HQINSLQYSVTGDQILVVS  233 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccc--cccceeeecCCCCeEEEEe
Confidence            455667788999999999999999999999999999999976432    2233333334  4699999999999999999


Q ss_pred             CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283          253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV  332 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~  332 (609)
                      .....+++|..    +..+-.+.                .++++          |-+       ....+||...+++.+|
T Consensus       234 g~aqakl~DRd----G~~~~e~~----------------KGDQY----------I~D-------m~nTKGHia~lt~g~w  276 (641)
T KOG0772|consen  234 GSAQAKLLDRD----GFEIVEFS----------------KGDQY----------IRD-------MYNTKGHIAELTCGCW  276 (641)
T ss_pred             cCcceeEEccC----Cceeeeee----------------ccchh----------hhh-------hhccCCceeeeecccc
Confidence            99999999965    22221111                11111          111       1235789999999999


Q ss_pred             ecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCc
Q 007283          333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPK  412 (609)
Q Consensus       333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  412 (609)
                      ++.+...++|++.||++|+|+.+...         ++...+..                   ..                
T Consensus       277 hP~~k~~FlT~s~DgtlRiWdv~~~k---------~q~qVik~-------------------k~----------------  312 (641)
T KOG0772|consen  277 HPDNKEEFLTCSYDGTLRIWDVNNTK---------SQLQVIKT-------------------KP----------------  312 (641)
T ss_pred             ccCcccceEEecCCCcEEEEecCCch---------hheeEEee-------------------cc----------------
Confidence            98888899999999999999875421         01100000                   00                


Q ss_pred             eeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeee-eEEEecCC
Q 007283          413 DLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE-EAVLEKHR  491 (609)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~-~~~~~~h~  491 (609)
                                      ..              ..+-+++.++++|||+++|+|+.||.|.+|+..+..... -.+-++|.
T Consensus       313 ----------------~~--------------g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~  362 (641)
T KOG0772|consen  313 ----------------AG--------------GKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHL  362 (641)
T ss_pred             ----------------CC--------------CcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccC
Confidence                            00              012357889999999999999999999999975433221 23446788


Q ss_pred             C--ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC--CCCceEEEEECCCCcEEEEEe------CCCeEEEE
Q 007283          492 G--AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY--HTARINCLAWSPNNSMVATGS------LDTCVIIY  561 (609)
Q Consensus       492 ~--~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~--h~~~i~~l~~s~d~~~l~s~s------~D~~v~vw  561 (609)
                      .  .|+||+||+||++|+|-+.|.++++||+......+....+  ....-+.++||||.++|+||.      .-+++.+|
T Consensus       363 ~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~  442 (641)
T KOG0772|consen  363 PGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFF  442 (641)
T ss_pred             CCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEE
Confidence            7  8999999999999999999999999998776554432221  234568899999999999986      34678888


Q ss_pred             EcCCCCCcceeEeccccCCeEEEEEcCC-CeEEEEeCCCcEEEE
Q 007283          562 EIDKPASSRMTIKGAHLGGVYGLAFTDE-HSVVSSGEDACVRVW  604 (609)
Q Consensus       562 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~l~s~s~D~~i~~W  604 (609)
                      |-.+.  ....-..-....|-.+.|.+. +.|+.++.||+++++
T Consensus       443 d~~t~--d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  443 DRMTL--DTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             eccce--eeEEEecCCCceEEEEeecchhhheeeecCCCceEEE
Confidence            75431  112212223556777888853 668889999999876

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1e-27  Score=205.36  Aligned_cols=286  Identities=21%  Similarity=0.344  Sum_probs=210.9

Q ss_pred             eeEEEECC--CCCEEEEEECCCCc-ceEEEEEcCC--CCeeEEEe--cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC
Q 007283          103 IDDLQWSP--DGLRIVACGDGKGK-SLVRAFMWDS--GTNVGEFD--GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG  175 (609)
Q Consensus       103 v~~~~~sp--dg~~l~~~~~~~~~-~~~~~~~~~~--~~~~~~~~--~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~  175 (609)
                      -.++.|||  +++..++++..-+. ...++++.+.  ++.+.++.  .-.+.+..++|++....++++++.||.+++||.
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~   90 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDL   90 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEecc
Confidence            36789999  55555544321000 0123444443  33344333  235678899999998889999999999999995


Q ss_pred             C-CCceeeeccCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC-CCCeEEEEe
Q 007283          176 P-PFKFKLSHRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP-DGKQVLTAS  252 (609)
Q Consensus       176 ~-~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s  252 (609)
                      . +.+.+..++.|.+.|.++.|++- ++.+++++.|++|++|+...++.+.++   .||...|+...|+| ...+++++|
T Consensus        91 ~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf---~gh~~~Iy~a~~sp~~~nlfas~S  167 (311)
T KOG0277|consen   91 TMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTF---NGHNSCIYQAAFSPHIPNLFASAS  167 (311)
T ss_pred             CCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEee---cCCccEEEEEecCCCCCCeEEEcc
Confidence            4 44567788999999999999986 457888899999999999999888886   48999999999999 567999999


Q ss_pred             CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283          253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV  332 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~  332 (609)
                      .|+++++||++..  ++.                                               ..+..|..++.++.+
T Consensus       168 gd~~l~lwdvr~~--gk~-----------------------------------------------~~i~ah~~Eil~cdw  198 (311)
T KOG0277|consen  168 GDGTLRLWDVRSP--GKF-----------------------------------------------MSIEAHNSEILCCDW  198 (311)
T ss_pred             CCceEEEEEecCC--Cce-----------------------------------------------eEEEeccceeEeecc
Confidence            9999999998631  211                                               113346556666666


Q ss_pred             ecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCc
Q 007283          333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPK  412 (609)
Q Consensus       333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  412 (609)
                      +..+..+++||+.|+.|+.||                                                           
T Consensus       199 ~ky~~~vl~Tg~vd~~vr~wD-----------------------------------------------------------  219 (311)
T KOG0277|consen  199 SKYNHNVLATGGVDNLVRGWD-----------------------------------------------------------  219 (311)
T ss_pred             cccCCcEEEecCCCceEEEEe-----------------------------------------------------------
Confidence            554555566666555555554                                                           


Q ss_pred             eeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCC
Q 007283          413 DLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG  492 (609)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~  492 (609)
                                                                                     ++.-. ....++.+|.-
T Consensus       220 ---------------------------------------------------------------ir~~r-~pl~eL~gh~~  235 (311)
T KOG0277|consen  220 ---------------------------------------------------------------IRNLR-TPLFELNGHGL  235 (311)
T ss_pred             ---------------------------------------------------------------hhhcc-ccceeecCCce
Confidence                                                                           33211 12344567888


Q ss_pred             ceEEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEc
Q 007283          493 AVSVIRYSPD-VSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       493 ~i~~v~~s~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~-d~~~l~s~s~D~~v~vw~~  563 (609)
                      .|..|+|||- -..|||++.|.+++|||.+.+.-.+.....|+..+..++||+ +..++|+.+-|..+.||+.
T Consensus       236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence            8999999998 468999999999999998866554555667999999999998 5679999999999999983

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.4e-28  Score=240.43  Aligned_cols=302  Identities=20%  Similarity=0.313  Sum_probs=199.5

Q ss_pred             cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC
Q 007283           55 EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS  134 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  134 (609)
                      .|++.|.++.|||||+|||+|+.|+-||||.+...+...    ...+.-.++-|.     +.+-+....  ..-.-.-..
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~----~~~~~~~~~~~~-----~~~~s~~~p--~~s~~~~~~  333 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMR----VAEGDSSCMYFE-----YNANSQIEP--STSSEEKIS  333 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhc----ccccccchhhhh-----hhhccccCc--ccccccccc
Confidence            899999999999999999999999999999987644311    111111111000     000000000  000000000


Q ss_pred             CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283          135 GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII  214 (609)
Q Consensus       135 ~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~i  214 (609)
                      +.. ..... .....+ ...|...            ..+.   -+....+.||.+.|..|.||.++ +|++++.|+++++
T Consensus       334 ~~~-s~~~~-~~~s~~-~~~p~~~------------f~f~---ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRL  394 (712)
T KOG0283|consen  334 SRT-SSSRK-GSQSPC-VLLPLKA------------FVFS---EKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRL  394 (712)
T ss_pred             ccc-ccccc-ccCCcc-ccCCCcc------------cccc---ccchhhhhccchhheecccccCC-eeEeccccccEEe
Confidence            000 00000 000000 0011110            0111   13456789999999999999886 7999999999999


Q ss_pred             EeCCCCccccccCcCCCCccceEEEEECC-CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcC
Q 007283          215 YDGKTADKIGELSPEDGHKGSVYAVSWSP-DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN  293 (609)
Q Consensus       215 wd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (609)
                      |++...+++..+    .|..-|+|++|+| |.+||++||-|+.+|||++...                            
T Consensus       395 Wh~~~~~CL~~F----~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~----------------------------  442 (712)
T KOG0283|consen  395 WHPGRKECLKVF----SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDK----------------------------  442 (712)
T ss_pred             ecCCCcceeeEE----ecCCeeEEEEecccCCCcEeecccccceEEeecCcC----------------------------
Confidence            999999999887    5999999999999 7789999999999999987410                            


Q ss_pred             CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEe
Q 007283          294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCF  373 (609)
Q Consensus       294 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~  373 (609)
                                                                            .|..|.-                   
T Consensus       443 ------------------------------------------------------~Vv~W~D-------------------  449 (712)
T KOG0283|consen  443 ------------------------------------------------------KVVDWND-------------------  449 (712)
T ss_pred             ------------------------------------------------------eeEeehh-------------------
Confidence                                                                  1112200                   


Q ss_pred             eeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEE
Q 007283          374 AAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTAS  453 (609)
Q Consensus       374 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (609)
                                                                                              ++.-|+++
T Consensus       450 ------------------------------------------------------------------------l~~lITAv  457 (712)
T KOG0283|consen  450 ------------------------------------------------------------------------LRDLITAV  457 (712)
T ss_pred             ------------------------------------------------------------------------hhhhheeE
Confidence                                                                                    00127888


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC------CCceEEEEECCCCC-EEEEEeCCCeEEEEEccCCceE
Q 007283          454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH------RGAVSVIRYSPDVS-MFASGDVNREAIVWDRVSREVK  526 (609)
Q Consensus       454 ~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h------~~~i~~v~~s~~~~-~l~s~s~d~~v~iwd~~~~~~~  526 (609)
                      ++.|||++.++|+.+|..++|+....++.......-|      ...|+.+.|.|... .+++.+.|..|||+|.......
T Consensus       458 cy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv  537 (712)
T KOG0283|consen  458 CYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV  537 (712)
T ss_pred             EeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence            9999999999999999999999887665433222111      22799999987644 4777789999999998554443


Q ss_pred             EeeecCC-C-CceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          527 LKNMLYH-T-ARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       527 ~~~~~~h-~-~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      .+ ++++ + ..-....|+.||++|++|+.|..|.+|+++
T Consensus       538 ~K-fKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  538 HK-FKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             hh-hcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            32 3332 2 223467899999999999999999999984

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=8.5e-26  Score=190.14  Aligned_cols=296  Identities=24%  Similarity=0.361  Sum_probs=205.1

Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEe------CCCCccccc------cCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283          187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYD------GKTADKIGE------LSPEDGHKGSVYAVSWSPDGKQVLTASAD  254 (609)
Q Consensus       187 h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd------~~~~~~~~~------~~~~~~h~~~V~~l~~spd~~~l~s~s~d  254 (609)
                      ..+.|.+++|+|.|.+.++|+..++.+|.-      .+.+.....      ..-.+.|.+.|+|.+|+|+|++|++|+.|
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsnd  110 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSND  110 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCC
Confidence            456799999999999999999999988863      222221111      11134689999999999999999999999


Q ss_pred             CcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec
Q 007283          255 KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN  334 (609)
Q Consensus       255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  334 (609)
                      .+|++-..+.+..                                            .......++.-|.+.|..++|.+
T Consensus       111 k~ik~l~fn~dt~--------------------------------------------~~~g~dle~nmhdgtirdl~fld  146 (350)
T KOG0641|consen  111 KTIKVLPFNADTC--------------------------------------------NATGHDLEFNMHDGTIRDLAFLD  146 (350)
T ss_pred             ceEEEEecccccc--------------------------------------------cccCcceeeeecCCceeeeEEec
Confidence            9999876542100                                            00112245667888899998873


Q ss_pred             ---CCCCEEEEEe-cCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCC
Q 007283          335 ---IDPKVILSSS-YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQ  410 (609)
Q Consensus       335 ---~~~~~~~t~s-~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~  410 (609)
                         ..+.++++++ .|..|.+=+...+..                                                   
T Consensus       147 ~~~s~~~il~s~gagdc~iy~tdc~~g~~---------------------------------------------------  175 (350)
T KOG0641|consen  147 DPESGGAILASAGAGDCKIYITDCGRGQG---------------------------------------------------  175 (350)
T ss_pred             CCCcCceEEEecCCCcceEEEeecCCCCc---------------------------------------------------
Confidence               2234555554 233333322221110                                                   


Q ss_pred             CceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC
Q 007283          411 PKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH  490 (609)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h  490 (609)
                                  +.+.++-.|                 -+.+ -++-+|-.+++|++|.+||+||++-.......-...|
T Consensus       176 ------------~~a~sghtg-----------------hila-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~  225 (350)
T KOG0641|consen  176 ------------FHALSGHTG-----------------HILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH  225 (350)
T ss_pred             ------------ceeecCCcc-----------------cEEE-EEEecCcEEEccCCCceEEEEeeeccceeeeccCccc
Confidence                        000000000                 0111 1234678899999999999999976544321111223


Q ss_pred             -----CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          491 -----RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       491 -----~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                           ...|.+|+..|.|+++++|-.|..+.+||+..++. +..+..|+..|.|+.|||...+|.+++.|..|++=|+.-
T Consensus       226 ~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~-iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  226 DGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             CCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-eeeeCCCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence                 25699999999999999999999999999987764 455778999999999999999999999999999999863


Q ss_pred             C-CCcc-eeEeccccCCeEEEEEcCC-CeEEEEeCCCcEEEEEccC
Q 007283          566 P-ASSR-MTIKGAHLGGVYGLAFTDE-HSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       566 ~-~~~~-~~~~~~h~~~v~~~~~s~~-~~l~s~s~D~~i~~W~~~~  608 (609)
                      . ..++ ..+...|...+-.++|.+. --++|.|+|+++.+|.+.+
T Consensus       305 dla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~~  350 (350)
T KOG0641|consen  305 DLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALNG  350 (350)
T ss_pred             chhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccCC
Confidence            2 1111 2334569999999999954 4589999999999998753

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.1e-27  Score=236.73  Aligned_cols=289  Identities=24%  Similarity=0.305  Sum_probs=191.7

Q ss_pred             CCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEE-Eec-----cCCCCCccceEEEE-EEcCC--eEEEEEc
Q 007283          231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKK-TLT-----PSGSGGVDDMLVGC-LWQND--FLVIVSL  301 (609)
Q Consensus       231 ~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~-~~~-----~~~~~~~~~~~~~~-~~~~~--~~~~~~~  301 (609)
                      +|.+.|.++.||+||+|||+||.|+.||||.+.+.....+-. ...     ......+......- .-...  ..-....
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            799999999999999999999999999999986421100000 000     00000000000000 00000  0000001


Q ss_pred             CCcEEEEe--CCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCc
Q 007283          302 GGTISIFS--ANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEE  379 (609)
Q Consensus       302 ~g~i~~~~--~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (609)
                      ...+.+-.  +.-...+...+.||...|..+.|+..  ++|+++|.|.|||+|.+...                      
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~----------------------  400 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRK----------------------  400 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCc----------------------
Confidence            11111100  01113445678999999999999744  79999999999999965421                      


Q ss_pred             EEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-C
Q 007283          380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-D  458 (609)
Q Consensus       380 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~  458 (609)
                                                                                 +++..+.|..-|+|++|+| |
T Consensus       401 -----------------------------------------------------------~CL~~F~HndfVTcVaFnPvD  421 (712)
T KOG0283|consen  401 -----------------------------------------------------------ECLKVFSHNDFVTCVAFNPVD  421 (712)
T ss_pred             -----------------------------------------------------------ceeeEEecCCeeEEEEecccC
Confidence                                                                       1122233334599999999 8


Q ss_pred             CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee--------e
Q 007283          459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN--------M  530 (609)
Q Consensus       459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~--------~  530 (609)
                      .++|++|+-|+.+|||++.......   ...-...|++++|+|||++.+.|+.+|.+++|+....+.....        -
T Consensus       422 DryFiSGSLD~KvRiWsI~d~~Vv~---W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk  498 (712)
T KOG0283|consen  422 DRYFISGSLDGKVRLWSISDKKVVD---WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKK  498 (712)
T ss_pred             CCcEeecccccceEEeecCcCeeEe---ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCcc
Confidence            8999999999999999997665422   2233479999999999999999999999999997765543221        1


Q ss_pred             cCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEcCCCCCcceeEeccccCC-eEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          531 LYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDKPASSRMTIKGAHLGG-VYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       531 ~~h~~~i~~l~~s~d~~-~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~-v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ..|. .||.+.|.|... .+...+.|..|+|+|..... ....+++.|... -..-.|+ |+++||++|.|..|.+|+.+
T Consensus       499 ~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~-lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~  576 (712)
T KOG0283|consen  499 KQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD-LVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND  576 (712)
T ss_pred             ccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccchh-hhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence            1233 799999997543 46667789999999985422 334455555443 3456677 99999999999999999974

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=6.6e-27  Score=218.51  Aligned_cols=289  Identities=18%  Similarity=0.245  Sum_probs=226.9

Q ss_pred             eeecCCCccCcCceeEEeecCCCCe-EEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 007283            6 ETYTCVPSTERGRGILISGHPKSNS-ILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW   84 (609)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vW   84 (609)
                      .+++.++.+++ ....|.++|+.-+ ++.+.+-.+.||+..+......+...++.|.++.|..||++||.|+..|.|+|+
T Consensus        17 ~~~~~~~ke~~-~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vf   95 (487)
T KOG0310|consen   17 ETFPPVHKEHN-SVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVF   95 (487)
T ss_pred             hcccccccccC-cceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEe
Confidence            35566777766 4468999997543 667778899999998877777677778999999999999999999999999999


Q ss_pred             cCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe
Q 007283           85 GAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC  164 (609)
Q Consensus        85 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~  164 (609)
                      |..+ +...+.+..|..+|....|+|++..+++.|++.  ..+++|+.++......+.+|++.|.+.+|+|..+..++||
T Consensus        96 D~k~-r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd--~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtG  172 (487)
T KOG0310|consen   96 DMKS-RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD--KVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTG  172 (487)
T ss_pred             cccc-HHHHHHHhhccCceeEEEecccCCeEEEecCCC--ceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEec
Confidence            9544 434456888999999999999877666665433  3678888888776668899999999999999988889999


Q ss_pred             cCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283          165 GEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD  244 (609)
Q Consensus       165 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd  244 (609)
                      |+||.|++||.........-..|..+|..+.|.|.|+.||+|+. ..+++||..+|......  ...|...|+|+++..+
T Consensus       173 sYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~--~~~H~KtVTcL~l~s~  249 (487)
T KOG0310|consen  173 SYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTS--MFNHNKTVTCLRLASD  249 (487)
T ss_pred             CCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhh--hhcccceEEEEEeecC
Confidence            99999999998776333333468999999999999999998865 57999999866544332  1249999999999999


Q ss_pred             CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEE
Q 007283          245 GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIF  308 (609)
Q Consensus       245 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~  308 (609)
                      +..|+++|-|+++++||+.   ..+.+..+...++  +  +.++....+..+++|-.+|.+.+-
T Consensus       250 ~~rLlS~sLD~~VKVfd~t---~~Kvv~s~~~~~p--v--Lsiavs~dd~t~viGmsnGlv~~r  306 (487)
T KOG0310|consen  250 STRLLSGSLDRHVKVFDTT---NYKVVHSWKYPGP--V--LSIAVSPDDQTVVIGMSNGLVSIR  306 (487)
T ss_pred             CceEeecccccceEEEEcc---ceEEEEeeecccc--e--eeEEecCCCceEEEecccceeeee
Confidence            9999999999999999975   3566666554321  1  112233345677888888876555

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=2.6e-27  Score=208.96  Aligned_cols=325  Identities=18%  Similarity=0.288  Sum_probs=236.8

Q ss_pred             cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      .++.|.||++.|..++.......+.++++|.|.+||.++++.++ .++.+|.+.|.++.|+|.+..+++.+.+..   ..
T Consensus       140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL-~~Y~GH~GSVNsikfh~s~~L~lTaSGD~t---aH  215 (481)
T KOG0300|consen  140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACL-ATYTGHTGSVNSIKFHNSGLLLLTASGDET---AH  215 (481)
T ss_pred             ehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccce-eeecccccceeeEEeccccceEEEccCCcc---hH
Confidence            45678999999999999888889999999999999999998865 468999999999999999988777654332   22


Q ss_pred             EEE----cCCCCeeEEEecCCcc--EEEEEEeeCCCeEEEEe--cCC-CeEEEEeCCCCceeeeccCcccceEEEEEcCC
Q 007283          129 AFM----WDSGTNVGEFDGHSRR--VLSCAFKPSRPFRIATC--GED-FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD  199 (609)
Q Consensus       129 ~~~----~~~~~~~~~~~~h~~~--v~~~~~~p~~~~~i~t~--~~d-~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  199 (609)
                      +|.    |....+.. -.+|+..  +.+-  ..+.+  ...+  ..| ++|++       ....+.||...|.+..|...
T Consensus       216 IW~~av~~~vP~~~a-~~~hSsEeE~e~s--De~~~--d~d~~~~sD~~tiRv-------Pl~~ltgH~~vV~a~dWL~g  283 (481)
T KOG0300|consen  216 IWKAAVNWEVPSNNA-PSDHSSEEEEEHS--DEHNR--DTDSSEKSDGHTIRV-------PLMRLTGHRAVVSACDWLAG  283 (481)
T ss_pred             HHHHhhcCcCCCCCC-CCCCCchhhhhcc--ccccc--ccccccccCCceeee-------eeeeeeccccceEehhhhcC
Confidence            332    33322211 1223221  1111  11111  1111  112 22322       34567899999999999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCC
Q 007283          200 GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS  279 (609)
Q Consensus       200 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  279 (609)
                      |+.+++++.|.+..+||+++++.+..+   .||....+.++-+|..+++++.|.|.+.|+||+++.     ++       
T Consensus       284 g~Q~vTaSWDRTAnlwDVEtge~v~~L---tGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea-----I~-------  348 (481)
T KOG0300|consen  284 GQQMVTASWDRTANLWDVETGEVVNIL---TGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA-----IQ-------  348 (481)
T ss_pred             cceeeeeeccccceeeeeccCceeccc---cCcchhccccccCCcceEEEEeccCceeEeccchhh-----cc-------
Confidence            999999999999999999999988776   499999999999999999999999999999998621     10       


Q ss_pred             CCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccc
Q 007283          280 GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG  359 (609)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~  359 (609)
                                                          ....++||...|+++.|...  ..+++|++|.+|++|++.+...
T Consensus       349 ------------------------------------sV~VFQGHtdtVTS~vF~~d--d~vVSgSDDrTvKvWdLrNMRs  390 (481)
T KOG0300|consen  349 ------------------------------------SVAVFQGHTDTVTSVVFNTD--DRVVSGSDDRTVKVWDLRNMRS  390 (481)
T ss_pred             ------------------------------------eeeeecccccceeEEEEecC--CceeecCCCceEEEeeeccccC
Confidence                                                11246789999999998743  5699999999999998753210


Q ss_pred             ceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCe
Q 007283          360 GKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAE  439 (609)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (609)
                               +          +.                                                          
T Consensus       391 ---------p----------lA----------------------------------------------------------  393 (481)
T KOG0300|consen  391 ---------P----------LA----------------------------------------------------------  393 (481)
T ss_pred             ---------c----------ce----------------------------------------------------------
Confidence                     0          00                                                          


Q ss_pred             eeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeE--EEecCCCceEEEEECCCC--CEEEEEeCCCeE
Q 007283          440 VVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEA--VLEKHRGAVSVIRYSPDV--SMFASGDVNREA  515 (609)
Q Consensus       440 ~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~--~~~~h~~~i~~v~~s~~~--~~l~s~s~d~~v  515 (609)
                         .+....+++-++++-.+..+|+--.+..||+||+.+..+....  .-++|...|.|++|..+-  .-|.+++.|+.+
T Consensus       394 ---TIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v  470 (481)
T KOG0300|consen  394 ---TIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMV  470 (481)
T ss_pred             ---eeecCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCccccccccccccee
Confidence               0001123555666766777788778889999999877653222  346899999999998663  457789999999


Q ss_pred             EEEEccC
Q 007283          516 IVWDRVS  522 (609)
Q Consensus       516 ~iwd~~~  522 (609)
                      .-|.+..
T Consensus       471 ~gW~in~  477 (481)
T KOG0300|consen  471 AGWKINT  477 (481)
T ss_pred             eeeEecc
Confidence            9998643

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=5.7e-27  Score=239.62  Aligned_cols=311  Identities=24%  Similarity=0.374  Sum_probs=211.9

Q ss_pred             cC-CCCcEEEEECCCCCEEEEEe--CCCcEEEEcCCCC-----------ceeeEEEeecccceeEEEECCCCCEEEEEEC
Q 007283           55 EH-AYPATVARFSPNGEWIASAD--VSGTVRIWGAHND-----------HVLKKEFRVLSGRIDDLQWSPDGLRIVACGD  120 (609)
Q Consensus        55 ~h-~~~v~~~~~sp~g~~las~~--~d~~i~vWd~~~~-----------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~  120 (609)
                      +| ...|..+..+|||..+|||+  .|+.++||..+.-           .........|.+.|.++.|||||++|++.+|
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            45 45689999999999999999  8999999976531           0011223344555666666666666555554


Q ss_pred             CCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCC
Q 007283          121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG  200 (609)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  200 (609)
                      ++     .+..|+... .                +.+. .+-+.|.-     -+.+.++....+.+|...|..++|+|++
T Consensus        90 D~-----~v~iW~~~~-~----------------~~~~-~fgs~g~~-----~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~  141 (942)
T KOG0973|consen   90 DR-----LVMIWERAE-I----------------GSGT-VFGSTGGA-----KNVESWKVVSILRGHDSDVLDVNWSPDD  141 (942)
T ss_pred             cc-----eEEEeeecc-c----------------CCcc-cccccccc-----cccceeeEEEEEecCCCccceeccCCCc
Confidence            32     244443321 0                0000 01110000     1234456777899999999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCC
Q 007283          201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG  280 (609)
Q Consensus       201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  280 (609)
                      .+|++++.|++|.||+.++.+++..+   .+|.+.|..+.|.|-|+|||+-+.|++|++|+...  .+ +.+..      
T Consensus       142 ~~lvS~s~DnsViiwn~~tF~~~~vl---~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d--w~-i~k~I------  209 (942)
T KOG0973|consen  142 SLLVSVSLDNSVIIWNAKTFELLKVL---RGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD--WG-IEKSI------  209 (942)
T ss_pred             cEEEEecccceEEEEccccceeeeee---ecccccccceEECCccCeeeeecCCceEEEEEccc--ce-eeEee------
Confidence            99999999999999999999877766   48999999999999999999999999999998542  10 00000      


Q ss_pred             CccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccc
Q 007283          281 GVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG  360 (609)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~  360 (609)
                                                              .++.+.+       ...                       
T Consensus       210 ----------------------------------------t~pf~~~-------~~~-----------------------  219 (942)
T KOG0973|consen  210 ----------------------------------------TKPFEES-------PLT-----------------------  219 (942)
T ss_pred             ----------------------------------------ccchhhC-------CCc-----------------------
Confidence                                                    0000000       000                       


Q ss_pred             eeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCee
Q 007283          361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEV  440 (609)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (609)
                                                                                                      
T Consensus       220 --------------------------------------------------------------------------------  219 (942)
T KOG0973|consen  220 --------------------------------------------------------------------------------  219 (942)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEeccCCceeEEEEcCCCCEEEEEeC----CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC------C-------
Q 007283          441 VSTINLRFPVTASAIAPDGSEAIIGSQ----DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD------V-------  503 (609)
Q Consensus       441 ~~~~~~~~~~~~~~~sp~g~~l~~gs~----dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~------~-------  503 (609)
                             .-+.-+.+||||++|++...    -.++.|.+-.+.  .....+-+|.+++.++.|+|.      .       
T Consensus       220 -------T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tW--k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~  290 (942)
T KOG0973|consen  220 -------TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTW--KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQP  290 (942)
T ss_pred             -------ceeeecccCCCcCeecchhhccCCcceeEEEecCCc--eeeeeeecCCCceEEEEeChHHhccccccCCccCC
Confidence                   00223456888888877633    225677765333  335678899999999999984      1       


Q ss_pred             ----CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          504 ----SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       504 ----~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                          ..+|+||+|+++-||.....+.........+..|..++|||||..|+..|.||+|.+...+
T Consensus       291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fe  355 (942)
T KOG0973|consen  291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFE  355 (942)
T ss_pred             CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcc
Confidence                1689999999999999754433221112245789999999999999999999999999875

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2e-26  Score=213.58  Aligned_cols=306  Identities=20%  Similarity=0.325  Sum_probs=227.5

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      ...+..|.-++.+++++||.+++.+++.|++|.=|++.+++........  ..|...                       
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~--~ev~k~-----------------------  189 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIER--DEVLKS-----------------------  189 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCccccccccc--chhhhh-----------------------
Confidence            4557889999999999999999999999999999999887532111000  000000                       


Q ss_pred             EEcCCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283          130 FMWDSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       130 ~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                          .+..+..- ++|...+.+++.+||+.+ ||+|+.|..+.+|+..+.+....+.+|.+.|.+++|-.....|.+++.
T Consensus       190 ----~~~~~k~~r~~h~keil~~avS~Dgky-latgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~  264 (479)
T KOG0299|consen  190 ----HGNPLKESRKGHVKEILTLAVSSDGKY-LATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA  264 (479)
T ss_pred             ----ccCCCCcccccccceeEEEEEcCCCcE-EEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec
Confidence                00000001 489999999999999986 999999999999999999999999999999999999887778999999


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      |..+++|+......+.++.   ||.+.|.++.....++.+..|+.|+++++|++.+..                      
T Consensus       265 Drsvkvw~~~~~s~vetly---GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees----------------------  319 (479)
T KOG0299|consen  265 DRSVKVWSIDQLSYVETLY---GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES----------------------  319 (479)
T ss_pred             CCceEEEehhHhHHHHHHh---CCccceeeechhcccceEEeccccceeEEEeccccc----------------------
Confidence            9999999988777776663   899999999998888888778899999999984210                      


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~  368 (609)
                                                  ...+.+|...+.+++|.+.  ..+++||.||.|.+|..-...          
T Consensus       320 ----------------------------qlifrg~~~sidcv~~In~--~HfvsGSdnG~IaLWs~~KKk----------  359 (479)
T KOG0299|consen  320 ----------------------------QLIFRGGEGSIDCVAFIND--EHFVSGSDNGSIALWSLLKKK----------  359 (479)
T ss_pred             ----------------------------eeeeeCCCCCeeeEEEecc--cceeeccCCceEEEeeecccC----------
Confidence                                        1223456778888888755  679999999999999653211          


Q ss_pred             ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283          369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF  448 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (609)
                      ++.                              .....++..                            .....++..+
T Consensus       360 plf------------------------------~~~~AHgv~----------------------------~~~~~~~~~~  381 (479)
T KOG0299|consen  360 PLF------------------------------TSRLAHGVI----------------------------PELDPVNGNF  381 (479)
T ss_pred             cee------------------------------Eeecccccc----------------------------CCcccccccc
Confidence            000                              000000000                            0001122336


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEecCC--eeeeeEEEecCCCceEEEEECCCCCEEEEE
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGD--TLTEEAVLEKHRGAVSVIRYSPDVSMFASG  509 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~--~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~  509 (609)
                      .++++++.|...++|+|+.+|.||+|.+..+  .+.....++ ..+-|++|+|+++|..+++|
T Consensus       382 Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  382 WITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEe
Confidence            7999999999999999999999999999876  222222233 67889999999999966665

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.2e-27  Score=218.67  Aligned_cols=290  Identities=22%  Similarity=0.337  Sum_probs=218.3

Q ss_pred             CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283          177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD  254 (609)
Q Consensus       177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d  254 (609)
                      |......+..|...+..+.|.++...|++|+.|..|.+|+....+  .+.++   .|..+.|+++.|.++++++++.+.|
T Consensus       164 pS~~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tL---aGs~g~it~~d~d~~~~~~iAas~d  240 (459)
T KOG0288|consen  164 PSRALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTL---AGSLGNITSIDFDSDNKHVIAASND  240 (459)
T ss_pred             chhhhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhh---hccCCCcceeeecCCCceEEeecCC
Confidence            334445566789999999999998899999999999999977665  44444   3667889999999999999999999


Q ss_pred             CcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec
Q 007283          255 KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN  334 (609)
Q Consensus       255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  334 (609)
                      +.+++|+++.   .+                                              ...++.||+..|+++.+..
T Consensus       241 ~~~r~Wnvd~---~r----------------------------------------------~~~TLsGHtdkVt~ak~~~  271 (459)
T KOG0288|consen  241 KNLRLWNVDS---LR----------------------------------------------LRHTLSGHTDKVTAAKFKL  271 (459)
T ss_pred             Cceeeeeccc---hh----------------------------------------------hhhhhcccccceeeehhhc
Confidence            9999999862   11                                              1245678999999998874


Q ss_pred             CCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCcee
Q 007283          335 IDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDL  414 (609)
Q Consensus       335 ~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~  414 (609)
                      .. ..+++|+.|.+|++|++......+.... .+....+......+.++.+|.+++.|+.+...                
T Consensus       272 ~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~----------------  333 (459)
T KOG0288|consen  272 SH-SRVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCSISDVISGHFDKKVRFWDIRSAD----------------  333 (459)
T ss_pred             cc-cceeeccccchhhhhhhhhhheeccccc-cccccceEecceeeeecccccceEEEeccCCc----------------
Confidence            43 2399999999999999876544332111 11111122223446677788888888765433                


Q ss_pred             EeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC--CC
Q 007283          415 SVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH--RG  492 (609)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h--~~  492 (609)
                                               ....+.....++++.++++|..+.+.+.|.++.+.|+++........-.+.  ..
T Consensus       334 -------------------------~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~as  388 (459)
T KOG0288|consen  334 -------------------------KTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCAS  388 (459)
T ss_pred             -------------------------eeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccc
Confidence                                     233344455789999999999999999999999999987654322211111  22


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC-ceEEEEECCCCcEEEEEeCCCeEEEE
Q 007283          493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA-RINCLAWSPNNSMVATGSLDTCVIIY  561 (609)
Q Consensus       493 ~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~-~i~~l~~s~d~~~l~s~s~D~~v~vw  561 (609)
                      ..+.+.|||++.|+|+||.||.++||++.+++........+.. .|++++|+|.|+.|++++.++.+.+|
T Consensus       389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            4889999999999999999999999999887664432233433 79999999999999999999999999

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.96  E-value=3.5e-26  Score=210.27  Aligned_cols=285  Identities=23%  Similarity=0.328  Sum_probs=224.7

Q ss_pred             ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 007283          146 RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE  225 (609)
Q Consensus       146 ~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~  225 (609)
                      ..+.++...|..+ .+.+||.|....++|.+..+....+.||.-.|+.+.|+|+...+++++.|..|+||..-.......
T Consensus       220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~  298 (506)
T KOG0289|consen  220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS  298 (506)
T ss_pred             CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccc
Confidence            4577777777744 599999999999999999999999999999999999999999999999999999998766553322


Q ss_pred             cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcE
Q 007283          226 LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI  305 (609)
Q Consensus       226 ~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  305 (609)
                      .   ..|.+.|+.+..+|.|+||++++.|++..+.|++.   +...                                  
T Consensus       299 ~---~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~---g~~l----------------------------------  338 (506)
T KOG0289|consen  299 S---RPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISS---GSQL----------------------------------  338 (506)
T ss_pred             c---ccccccceeeeeccCCcEEEEecCCceEEEEEccC---CcEE----------------------------------
Confidence            2   46999999999999999999999999988887652   1000                                  


Q ss_pred             EEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEec
Q 007283          306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGF  385 (609)
Q Consensus       306 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (609)
                                               +..          +.+                    .+                 
T Consensus       339 -------------------------t~v----------s~~--------------------~s-----------------  346 (506)
T KOG0289|consen  339 -------------------------TVV----------SDE--------------------TS-----------------  346 (506)
T ss_pred             -------------------------EEE----------eec--------------------cc-----------------
Confidence                                     000          000                    00                 


Q ss_pred             cceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEE
Q 007283          386 DNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG  465 (609)
Q Consensus       386 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~g  465 (609)
                                                                                   .-.+++.+|+|||..|.+|
T Consensus       347 -------------------------------------------------------------~v~~ts~~fHpDgLifgtg  365 (506)
T KOG0289|consen  347 -------------------------------------------------------------DVEYTSAAFHPDGLIFGTG  365 (506)
T ss_pred             -------------------------------------------------------------cceeEEeeEcCCceEEecc
Confidence                                                                         0125677899999999999


Q ss_pred             eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCC
Q 007283          466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN  545 (609)
Q Consensus       466 s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d  545 (609)
                      ..||.|+|||++.+.  ....+.+|+++|.+|+|+.||.++|++..|+.|++||++.-+........-..++.++.|.+.
T Consensus       366 t~d~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~S  443 (506)
T KOG0289|consen  366 TPDGVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQS  443 (506)
T ss_pred             CCCceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCC
Confidence            999999999998765  345678999999999999999999999999999999987654322222223347999999999


Q ss_pred             CcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       546 ~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      |++|+.++.|-.|.+++-.+.....+....-|++..++++|. ...+++++|.|..+++..+
T Consensus       444 Gt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  444 GTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             CCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            999999987766666553332223344455688899999998 6789999999999998865

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=1.7e-27  Score=210.66  Aligned_cols=288  Identities=19%  Similarity=0.284  Sum_probs=225.1

Q ss_pred             cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee--------ccCcccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283          143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS--------HRGHSNFVNCVRFSPDGSKFISVSSDKKGII  214 (609)
Q Consensus       143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~--------~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~i  214 (609)
                      +....+.+..|+||+.+ +++|+.|+.|.+|+..+++....        |.-+.++|.|+.|+.|..+||+|+.||.|++
T Consensus       211 g~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKv  289 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKV  289 (508)
T ss_pred             ccccchhheeeCCCCce-EeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEE
Confidence            44566889999999986 99999999999999888876543        3346789999999999999999999999999


Q ss_pred             EeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC
Q 007283          215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND  294 (609)
Q Consensus       215 wd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (609)
                      |.+++|.++..+.  .+|+..|+++.||.|+..++++|.|.++|+--+.   .++.                        
T Consensus       290 Wri~tG~ClRrFd--rAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlK---SGK~------------------------  340 (508)
T KOG0275|consen  290 WRIETGQCLRRFD--RAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLK---SGKC------------------------  340 (508)
T ss_pred             EEEecchHHHHhh--hhhccCeeEEEEccCcchhhcccccceEEEeccc---cchh------------------------
Confidence            9999999998884  5899999999999999999999999999998665   2222                        


Q ss_pred             eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283          295 FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA  374 (609)
Q Consensus       295 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~  374 (609)
                                            .+++.||+..|....|.+ ++..+++++.||+|++|+..+.......+          
T Consensus       341 ----------------------LKEfrGHsSyvn~a~ft~-dG~~iisaSsDgtvkvW~~KtteC~~Tfk----------  387 (508)
T KOG0275|consen  341 ----------------------LKEFRGHSSYVNEATFTD-DGHHIISASSDGTVKVWHGKTTECLSTFK----------  387 (508)
T ss_pred             ----------------------HHHhcCccccccceEEcC-CCCeEEEecCCccEEEecCcchhhhhhcc----------
Confidence                                  245668888888888764 56789999999999999765432111000          


Q ss_pred             eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE
Q 007283          375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA  454 (609)
Q Consensus       375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (609)
                      ..                                                                    ....++..+.
T Consensus       388 ~~--------------------------------------------------------------------~~d~~vnsv~  399 (508)
T KOG0275|consen  388 PL--------------------------------------------------------------------GTDYPVNSVI  399 (508)
T ss_pred             CC--------------------------------------------------------------------CCcccceeEE
Confidence            00                                                                    0012344444


Q ss_pred             EcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCC
Q 007283          455 IAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYH  533 (609)
Q Consensus       455 ~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h  533 (609)
                      .-| +-.+++++....+|+|-++++.-......-+...+...+...||.|..+-..+.|+.++.+++.++.... .+.-|
T Consensus       400 ~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~-tl~Vh  478 (508)
T KOG0275|consen  400 LLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLER-TLPVH  478 (508)
T ss_pred             EcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceee-eeecc
Confidence            444 4467899999999999998754321111112234556667799999999999999999999998887654 35669


Q ss_pred             CCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283          534 TARINCLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       534 ~~~i~~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                      ...|..++-+|..+.||+=+.||.+++|.
T Consensus       479 EkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  479 EKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cccccccccCcccchhhhhcccchhhhcC
Confidence            99999999999999999999999999995

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=7.2e-26  Score=194.90  Aligned_cols=281  Identities=19%  Similarity=0.258  Sum_probs=220.2

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      +.+.+|...|..++|+.+|.+||+|+.|+++++|.++..+..+.                                    
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~------------------------------------   57 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE------------------------------------   57 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh------------------------------------
Confidence            45778999999999999999999999999999999876532110                                    


Q ss_pred             EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283          131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                              ....+|.+.|..+.|+|..+.++++.+.|.+|++||....++..........+ -+.|+|+|.+++.+..|.
T Consensus        58 --------~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD  128 (313)
T KOG1407|consen   58 --------LVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDD  128 (313)
T ss_pred             --------hcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcc
Confidence                    02357888888889988888889999999999999999988877655444433 467999999999999999


Q ss_pred             cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283          211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL  290 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (609)
                      .|.+.|.++.+.....    ...-.+.-++|+.++.+++.-.+.|.|.|-....     +                    
T Consensus       129 ~it~id~r~~~~~~~~----~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyps-----L--------------------  179 (313)
T KOG1407|consen  129 RITFIDARTYKIVNEE----QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPS-----L--------------------  179 (313)
T ss_pred             cEEEEEecccceeehh----cccceeeeeeecCCCCEEEEecCCceEEEEeccc-----c--------------------
Confidence            9999998887655443    2455677888887777766666667776654310     0                    


Q ss_pred             EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccce
Q 007283          291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI  370 (609)
Q Consensus       291 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~  370 (609)
                                              ++...++.|.                                              
T Consensus       180 ------------------------kpv~si~AH~----------------------------------------------  189 (313)
T KOG1407|consen  180 ------------------------KPVQSIKAHP----------------------------------------------  189 (313)
T ss_pred             ------------------------ccccccccCC----------------------------------------------
Confidence                                    0001111121                                              


Q ss_pred             eEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCce
Q 007283          371 KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPV  450 (609)
Q Consensus       371 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (609)
                                                                                                   ...
T Consensus       190 -----------------------------------------------------------------------------snC  192 (313)
T KOG1407|consen  190 -----------------------------------------------------------------------------SNC  192 (313)
T ss_pred             -----------------------------------------------------------------------------cce
Confidence                                                                                         114


Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q 007283          451 TASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM  530 (609)
Q Consensus       451 ~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  530 (609)
                      .|+.|+|+|+++|+|+.|-.+-+||++  .+.+...+..+.-+|..|+||-||++||+||.|..|-|=+++++....+  
T Consensus       193 icI~f~p~GryfA~GsADAlvSLWD~~--ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~e--  268 (313)
T KOG1407|consen  193 ICIEFDPDGRYFATGSADALVSLWDVD--ELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWE--  268 (313)
T ss_pred             EEEEECCCCceEeeccccceeeccChh--HhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEE--
Confidence            567789999999999999999999986  5666788899999999999999999999999999999999888876543  


Q ss_pred             cCCCCceEEEEECCCCcEEEEEeCCC
Q 007283          531 LYHTARINCLAWSPNNSMVATGSLDT  556 (609)
Q Consensus       531 ~~h~~~i~~l~~s~d~~~l~s~s~D~  556 (609)
                      ..+.++...++|+|...+||-+..|.
T Consensus       269 I~~~~~t~tVAWHPk~~LLAyA~ddk  294 (313)
T KOG1407|consen  269 IPCEGPTFTVAWHPKRPLLAYACDDK  294 (313)
T ss_pred             eeccCCceeEEecCCCceeeEEecCC
Confidence            45888999999999999999887764

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.8e-26  Score=214.39  Aligned_cols=282  Identities=22%  Similarity=0.339  Sum_probs=221.0

Q ss_pred             CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283          145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      .+.|.+++|+|..++-+|+.+.- .+.+|+..+......+..-...|.++.|-.||++||.|...|.|+|+|.++...+.
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~S~-rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR  104 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTSSV-RVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILR  104 (487)
T ss_pred             cCcceeEecCCCCCCceEEeccc-EEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHH
Confidence            35799999999888767766554 46788866655555555566789999999999999999999999999966644455


Q ss_pred             ccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCC
Q 007283          225 ELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGG  303 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  303 (609)
                      .+   .+|+.+|....|+|+ +..|++|+.|+.+++||+++.    ..                                
T Consensus       105 ~~---~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a----~v--------------------------------  145 (487)
T KOG0310|consen  105 QL---YAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA----YV--------------------------------  145 (487)
T ss_pred             HH---hhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc----EE--------------------------------
Confidence            54   489999999999995 557888888999999998631    00                                


Q ss_pred             cEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEE
Q 007283          304 TISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTS  383 (609)
Q Consensus       304 ~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (609)
                                   ...+.+|+..|.+.++++.++.+++|||.||+|++|+....                          
T Consensus       146 -------------~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~--------------------------  186 (487)
T KOG0310|consen  146 -------------QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSL--------------------------  186 (487)
T ss_pred             -------------EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccC--------------------------
Confidence                         12456899999999999888889999999999999964321                          


Q ss_pred             eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEE
Q 007283          384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAI  463 (609)
Q Consensus       384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  463 (609)
                                                                            .+....+++..||..+.+-|.|..+|
T Consensus       187 ------------------------------------------------------~~~v~elnhg~pVe~vl~lpsgs~ia  212 (487)
T KOG0310|consen  187 ------------------------------------------------------TSRVVELNHGCPVESVLALPSGSLIA  212 (487)
T ss_pred             ------------------------------------------------------CceeEEecCCCceeeEEEcCCCCEEE
Confidence                                                                  01123456677899999999999999


Q ss_pred             EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC
Q 007283          464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS  543 (609)
Q Consensus       464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s  543 (609)
                      +++ ...+++||+.++... ...+..|...|+|+.+..+++.|.||+.|+.+++||+.+.+.  ..-..-.++|.+++.|
T Consensus       213 sAg-Gn~vkVWDl~~G~ql-l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv--v~s~~~~~pvLsiavs  288 (487)
T KOG0310|consen  213 SAG-GNSVKVWDLTTGGQL-LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV--VHSWKYPGPVLSIAVS  288 (487)
T ss_pred             EcC-CCeEEEEEecCCcee-hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEE--EEeeecccceeeEEec
Confidence            886 457999999855432 122345999999999999999999999999999999644332  2223457899999999


Q ss_pred             CCCcEEEEEeCCCeEEEEEc
Q 007283          544 PNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       544 ~d~~~l~s~s~D~~v~vw~~  563 (609)
                      ||++.++.|-.||.+.+-+.
T Consensus       289 ~dd~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  289 PDDQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             CCCceEEEecccceeeeehh
Confidence            99999999999999887644

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=1.3e-27  Score=214.65  Aligned_cols=284  Identities=18%  Similarity=0.279  Sum_probs=215.9

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      ++.+.+|.+.|.+++-+|.....+++|+.||.+++||.....+...+..|.+.|..+++..  ..++++++|++++.|..
T Consensus        59 v~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~  136 (433)
T KOG0268|consen   59 VGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKI  136 (433)
T ss_pred             hhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeec
Confidence            4567899999999999999866799999999999999999999999999999999999987  46889999999999975


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV  297 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (609)
                      .. ..+.++.    -.+.+..+.-+..+..++|+|.  .|-|||..-.   ..++.+                       
T Consensus       137 ~~-~p~~til----g~s~~~gIdh~~~~~~FaTcGe--~i~IWD~~R~---~Pv~sm-----------------------  183 (433)
T KOG0268|consen  137 DG-PPLHTIL----GKSVYLGIDHHRKNSVFATCGE--QIDIWDEQRD---NPVSSM-----------------------  183 (433)
T ss_pred             cC-Ccceeee----ccccccccccccccccccccCc--eeeecccccC---Ccccee-----------------------
Confidence            54 2333331    2345677777777778888875  5889997521   111111                       


Q ss_pred             EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283          298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE  377 (609)
Q Consensus       298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~  377 (609)
                                             .-....|.++.|++....+|++|+.|+.|.++|+..+..          +       
T Consensus       184 -----------------------swG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~P----------l-------  223 (433)
T KOG0268|consen  184 -----------------------SWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASP----------L-------  223 (433)
T ss_pred             -----------------------ecCCCceeEEecCCCcchheeeeccCCceEEEecccCCc----------c-------
Confidence                                   112234556666655557899999999999997643210          0       


Q ss_pred             CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283          378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP  457 (609)
Q Consensus       378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  457 (609)
                                                                                      ..+.....-+.++++|
T Consensus       224 ----------------------------------------------------------------~KVi~~mRTN~IswnP  239 (433)
T KOG0268|consen  224 ----------------------------------------------------------------KKVILTMRTNTICWNP  239 (433)
T ss_pred             ----------------------------------------------------------------ceeeeeccccceecCc
Confidence                                                                            0000112345678999


Q ss_pred             CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCC---
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT---  534 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~---  534 (609)
                      ++-.+++|+.|..++.||++.-. ....+..+|.+.|..|+|||-|+-+++||.|++|+||....+.-   .-..|+   
T Consensus       240 eafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S---RdiYhtkRM  315 (433)
T KOG0268|consen  240 EAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS---RDIYHTKRM  315 (433)
T ss_pred             cccceeeccccccceehhhhhhc-ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc---hhhhhHhhh
Confidence            88889999999999999997533 23567789999999999999999999999999999998654321   122344   


Q ss_pred             CceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          535 ARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       535 ~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      ..|.|+.||-|.+++++||.|+.|++|.-.
T Consensus       316 q~V~~Vk~S~Dskyi~SGSdd~nvRlWka~  345 (433)
T KOG0268|consen  316 QHVFCVKYSMDSKYIISGSDDGNVRLWKAK  345 (433)
T ss_pred             heeeEEEEeccccEEEecCCCcceeeeecc
Confidence            358999999999999999999999999854

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1.3e-25  Score=193.92  Aligned_cols=290  Identities=21%  Similarity=0.298  Sum_probs=221.1

Q ss_pred             EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007283          141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA  220 (609)
Q Consensus       141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~  220 (609)
                      +.||.++++.+.|..+|.. +-+|+.|.+..+|=..+++...++.||.+.|.|+..+.+.+.+++|+.|.++++||+++|
T Consensus         6 l~GHERplTqiKyN~eGDL-lFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDL-LFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             cccCccccceEEecCCCcE-EEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            6799999999999999985 889999999999988888889999999999999999999999999999999999999999


Q ss_pred             ccccccCcCCCCccceEEEEECCCCCeEEEEeCC-----CcEEEeecccCCC----Cc-eEEEeccCCCCCccceEEEEE
Q 007283          221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-----KSAKVWDISEDNH----GK-LKKTLTPSGSGGVDDMLVGCL  290 (609)
Q Consensus       221 ~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-----~~i~iwd~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~  290 (609)
                      +.+.++.    ....|..+.|+++|.+++....+     +.|.++|++....    .. ..+...+      +..+....
T Consensus        85 k~la~~k----~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~------~skit~a~  154 (327)
T KOG0643|consen   85 KQLATWK----TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTP------DSKITSAL  154 (327)
T ss_pred             cEEEEee----cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCC------ccceeeee
Confidence            9998874    46789999999999988777543     5688999874321    11 1111111      12233455


Q ss_pred             Ec--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283          291 WQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       291 ~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~  368 (609)
                      |.  ++.++++..+|.|..|+..........-..|...|..+.++. +..+++|+|.|.+-++||..+-           
T Consensus       155 Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~-d~T~FiT~s~Dttakl~D~~tl-----------  222 (327)
T KOG0643|consen  155 WGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSR-DRTYFITGSKDTTAKLVDVRTL-----------  222 (327)
T ss_pred             ecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccC-CcceEEecccCccceeeeccce-----------
Confidence            65  679999999999999998765544455567999999999874 4579999999999999975321           


Q ss_pred             ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283          369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF  448 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (609)
                                                                                            +.++......
T Consensus       223 ----------------------------------------------------------------------~v~Kty~te~  232 (327)
T KOG0643|consen  223 ----------------------------------------------------------------------EVLKTYTTER  232 (327)
T ss_pred             ----------------------------------------------------------------------eeEEEeeecc
Confidence                                                                                  0111122234


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEe--cCCee----------eeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEE
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSI--RGDTL----------TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAI  516 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~--~~~~~----------~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~  516 (609)
                      |+++.+++|...+++.|+.....-+=..  +.+++          .+....++|-++|++|+|+|+|+..+||+.||.||
T Consensus       233 PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR  312 (327)
T KOG0643|consen  233 PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVR  312 (327)
T ss_pred             cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEE
Confidence            6888888888888777765443322221  22211          11234689999999999999999999999999999


Q ss_pred             EEEccCC
Q 007283          517 VWDRVSR  523 (609)
Q Consensus       517 iwd~~~~  523 (609)
                      +.-+...
T Consensus       313 ~h~Fd~~  319 (327)
T KOG0643|consen  313 LHHFDSN  319 (327)
T ss_pred             EEEeccc
Confidence            9865544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=199.00  Aligned_cols=293  Identities=16%  Similarity=0.240  Sum_probs=193.9

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-----eeeEEEeecccceeEEEECCCCCEEEE-EECCCC
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH-----VLKKEFRVLSGRIDDLQWSPDGLRIVA-CGDGKG  123 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~-----~~~~~~~~~~~~v~~~~~spdg~~l~~-~~~~~~  123 (609)
                      +..+.||++.|++++||.||++|||++.|++||||++.+-.     +++.++.  -+-.+.++|+||.+-++. +-.+. 
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve--~dhpT~V~FapDc~s~vv~~~~g~-  155 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVE--YDHPTRVVFAPDCKSVVVSVKRGN-  155 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcccc--CCCceEEEECCCcceEEEEEccCC-
Confidence            34578999999999999999999999999999999986421     1111111  124578999999875554 43332 


Q ss_pred             cceEEEEEcCC---CCeeE---------EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccce
Q 007283          124 KSLVRAFMWDS---GTNVG---------EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV  191 (609)
Q Consensus       124 ~~~~~~~~~~~---~~~~~---------~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v  191 (609)
                        .++++-..+   +....         .-+.|+-.|..+-...++ ..|++++.|..|.+|+.. ++............
T Consensus       156 --~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n  231 (420)
T KOG2096|consen  156 --KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN  231 (420)
T ss_pred             --EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence              233333322   11111         113456666666655544 469999999999999987 55544443334445


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCC---CCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc--
Q 007283          192 NCVRFSPDGSKFISVSSDKKGIIYDGK---TAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE--  264 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~~d~~i~iwd~~---~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~--  264 (609)
                      +..+.||+|+++++++.-..+++|.+-   .|.  .....-..+||.+.|..++|+|+.+.+++.|.||+.|+||.+.  
T Consensus       232 ~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY  311 (420)
T KOG2096|consen  232 YDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRY  311 (420)
T ss_pred             cceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceE
Confidence            678899999999999999999999742   221  1111223469999999999999999999999999999999752  


Q ss_pred             --CCCCceEEEe-ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283          265 --DNHGKLKKTL-TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL  341 (609)
Q Consensus       265 --~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  341 (609)
                        ++..++.++. .+....+.+......+ .+...++++....+++|..++.......-..|...|.++.|.. ++++++
T Consensus       312 ~~~qDpk~Lk~g~~pl~aag~~p~RL~ls-P~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~-~g~~~a  389 (420)
T KOG2096|consen  312 EAGQDPKILKEGSAPLHAAGSEPVRLELS-PSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSS-DGKYIA  389 (420)
T ss_pred             ecCCCchHhhcCCcchhhcCCCceEEEeC-CCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecC-CCcEEe
Confidence              1122222222 1111111112222222 2345566777888999987765544444456999999999864 567888


Q ss_pred             EEecCCcEEEE
Q 007283          342 SSSYDGLIVKW  352 (609)
Q Consensus       342 t~s~dg~i~~W  352 (609)
                      ||+ |.-+++.
T Consensus       390 tcG-dr~vrv~  399 (420)
T KOG2096|consen  390 TCG-DRYVRVI  399 (420)
T ss_pred             eec-ceeeeee
Confidence            887 5556554

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.95  E-value=1.3e-25  Score=194.01  Aligned_cols=239  Identities=18%  Similarity=0.254  Sum_probs=196.8

Q ss_pred             EEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283           21 LISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      -|...-+|..|.++. +.+..+|-..+++++-.|.||++-|.|++.+-+.++++||++|.+++|||+++++++- .+ ..
T Consensus        15 qiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la-~~-k~   92 (327)
T KOG0643|consen   15 QIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLA-TW-KT   92 (327)
T ss_pred             eEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEE-Ee-ec
Confidence            566777888888775 5788899888999999999999999999999999999999999999999999998643 22 23


Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcc--eEEEEEcC-------CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKS--LVRAFMWD-------SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV  170 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~--~~~~~~~~-------~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i  170 (609)
                      ..+|..+.|+++|.+++++.|.....  .+.+++..       ...+...+..+...++..-|.|-+.+ |++|..|+.|
T Consensus        93 ~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~-ii~Ghe~G~i  171 (327)
T KOG0643|consen   93 NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGET-IIAGHEDGSI  171 (327)
T ss_pred             CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCE-EEEecCCCcE
Confidence            56799999999999999988754332  24444444       23446667778889999999999986 8899999999


Q ss_pred             EEEeCCCCc-eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC----------------------
Q 007283          171 NFYEGPPFK-FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS----------------------  227 (609)
Q Consensus       171 ~~~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~----------------------  227 (609)
                      ..||..+++ .+..-..|...|+.++|+||..++++++.|.+.++||..+-+.+.++.                      
T Consensus       172 s~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGG  251 (327)
T KOG0643|consen  172 SIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGG  251 (327)
T ss_pred             EEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCC
Confidence            999999874 455557799999999999999999999999999999976544332211                      


Q ss_pred             ------------------------------cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          228 ------------------------------PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       228 ------------------------------~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                                                    ..++|-++|++++|||+|+..++|+.||.||+.-.
T Consensus       252 qeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~F  316 (327)
T KOG0643|consen  252 QEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHF  316 (327)
T ss_pred             ceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEe
Confidence                                          13479999999999999999999999999998754

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.4e-25  Score=225.43  Aligned_cols=274  Identities=25%  Similarity=0.446  Sum_probs=218.1

Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc-cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccC
Q 007283          187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISED  265 (609)
Q Consensus       187 h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~  265 (609)
                      +...+.+..|.  ..++++++.|.++.+||..++..+.. +   .||.+.|.+++|..-+.+|++|+.|.++++||... 
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l---~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~s-  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRL---VGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCST-  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeec---cCCCCCceeEEEecCCCEEEEEecCCcEEeEecCC-
Confidence            45668888887  44789999999999999998887765 4   59999999999987788999999999999999752 


Q ss_pred             CCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEec
Q 007283          266 NHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY  345 (609)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~  345 (609)
                        +...                                              ..+.||...|.++..   .+..+++|+.
T Consensus       281 --g~C~----------------------------------------------~~l~gh~stv~~~~~---~~~~~~sgs~  309 (537)
T KOG0274|consen  281 --GECT----------------------------------------------HSLQGHTSSVRCLTI---DPFLLVSGSR  309 (537)
T ss_pred             --CcEE----------------------------------------------EEecCCCceEEEEEc---cCceEeeccC
Confidence              2222                                              345578888888765   3467888999


Q ss_pred             CCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEE
Q 007283          346 DGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVL  425 (609)
Q Consensus       346 dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (609)
                      |.+|++|+..++..                                                                  
T Consensus       310 D~tVkVW~v~n~~~------------------------------------------------------------------  323 (537)
T KOG0274|consen  310 DNTVKVWDVTNGAC------------------------------------------------------------------  323 (537)
T ss_pred             CceEEEEeccCcce------------------------------------------------------------------
Confidence            99999996542210                                                                  


Q ss_pred             EEecccEEEeeCCeeeEEec-cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCC
Q 007283          426 VSTDSGVVLLRGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVS  504 (609)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~  504 (609)
                                     +..+. +..+|.++.+.  +.++++|+.|++|++|++...++  ...+++|.+.|.++.+.+. .
T Consensus       324 ---------------l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c--l~sl~gH~~~V~sl~~~~~-~  383 (537)
T KOG0274|consen  324 ---------------LNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC--LKSLSGHTGRVYSLIVDSE-N  383 (537)
T ss_pred             ---------------EEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee--eeeecCCcceEEEEEecCc-c
Confidence                           01111 33567777766  88999999999999999986654  5788999999999988766 9


Q ss_pred             EEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc-ccCCeEE
Q 007283          505 MFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA-HLGGVYG  583 (609)
Q Consensus       505 ~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~-h~~~v~~  583 (609)
                      .+.+|+.|++|++||+.+.+..+..+.+|..-+..+.+  .+++|++++.|++|++||.....  ......+ |.+.|++
T Consensus       384 ~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~--~~~~~~~~~~~~v~~  459 (537)
T KOG0274|consen  384 RLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGE--CLRTLEGRHVGGVSA  459 (537)
T ss_pred             eEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCc--eeeeeccCCcccEEE
Confidence            99999999999999998873344557788888877766  68899999999999999987643  2333444 7899999


Q ss_pred             EEEcCCCeEEEEeCCCcEEEEEccC
Q 007283          584 LAFTDEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       584 ~~~s~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      +++. +..+++++.|+++++|++.+
T Consensus       460 l~~~-~~~il~s~~~~~~~l~dl~~  483 (537)
T KOG0274|consen  460 LALG-KEEILCSSDDGSVKLWDLRS  483 (537)
T ss_pred             eecC-cceEEEEecCCeeEEEeccc
Confidence            9987 57789999999999999863

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.3e-24  Score=183.03  Aligned_cols=280  Identities=22%  Similarity=0.307  Sum_probs=205.4

Q ss_pred             EEeecCCCCeEEEe-CCCEEEEEeCC---CC-------ccc-c----ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 007283           21 LISGHPKSNSILYT-NGRSVIILDLS---NP-------LQV-S----IYGEHAYPATVARFSPNGEWIASADVSGTVRIW   84 (609)
Q Consensus        21 ~~~~~~~~~~l~~~-~~~~~~i~~~~---~~-------~~~-~----~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vW   84 (609)
                      ++.|||.|...+.. |..+.+|....   +.       ++. .    .-..|++.|.|.+|||+|++||+|++|++|++-
T Consensus        37 av~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgsndk~ik~l  116 (350)
T KOG0641|consen   37 AVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVL  116 (350)
T ss_pred             eEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecCCCceEEEE
Confidence            88999998765443 45666664421   11       111 1    124789999999999999999999999999998


Q ss_pred             cCCCCce----eeEEEeecccceeEEEECCC----CCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeC
Q 007283           85 GAHNDHV----LKKEFRVLSGRIDDLQWSPD----GLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS  156 (609)
Q Consensus        85 d~~~~~~----~~~~~~~~~~~v~~~~~spd----g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (609)
                      -+....+    ...+|..|.+-|..++|-.|    |..|++.|.+.-  .+.+.+-..+.....+.+|++.|.++ ++-+
T Consensus       117 ~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc--~iy~tdc~~g~~~~a~sghtghilal-yswn  193 (350)
T KOG0641|consen  117 PFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDC--KIYITDCGRGQGFHALSGHTGHILAL-YSWN  193 (350)
T ss_pred             ecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcc--eEEEeecCCCCcceeecCCcccEEEE-EEec
Confidence            6654321    22357788999999999765    445555555443  34445555677788899999999877 3444


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCceeeecc----C---cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC
Q 007283          157 RPFRIATCGEDFLVNFYEGPPFKFKLSHR----G---HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE  229 (609)
Q Consensus       157 ~~~~i~t~~~d~~i~~~~~~~~~~~~~~~----~---h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  229 (609)
                      +- .|++|+.|.+|++||.+-..++..+.    +   ....|.+++..|.|++|++|-.|....+||++.+..+..+.  
T Consensus       194 ~~-m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~--  270 (350)
T KOG0641|consen  194 GA-MFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFH--  270 (350)
T ss_pred             Cc-EEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeC--
Confidence            54 59999999999999987665555432    1   23679999999999999999999999999999999888875  


Q ss_pred             CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC--eEEEEEcCCcEEE
Q 007283          230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND--FLVIVSLGGTISI  307 (609)
Q Consensus       230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~  307 (609)
                       .|+..|.++.|+|...|+++++.|..|++=|+..+    +.+.+..-.-+...+..+.|-|.+.  .+++.+.|.+..+
T Consensus       271 -phsadir~vrfsp~a~yllt~syd~~ikltdlqgd----la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl  345 (350)
T KOG0641|consen  271 -PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD----LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL  345 (350)
T ss_pred             -CCccceeEEEeCCCceEEEEecccceEEEeecccc----hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence             58999999999999999999999999999998643    2221111111122344567778754  4566777888888


Q ss_pred             EeCC
Q 007283          308 FSAN  311 (609)
Q Consensus       308 ~~~~  311 (609)
                      |.++
T Consensus       346 wa~~  349 (350)
T KOG0641|consen  346 WALN  349 (350)
T ss_pred             eccC
Confidence            8653

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=5.8e-25  Score=213.73  Aligned_cols=281  Identities=23%  Similarity=0.354  Sum_probs=209.8

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      .+.+.||+..|..+++.++. .+++++.||++++|+-..++.+..+                                  
T Consensus         7 s~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~----------------------------------   51 (745)
T KOG0301|consen    7 SHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETH----------------------------------   51 (745)
T ss_pred             EEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccce----------------------------------
Confidence            46788999999988887655 7889999999999986554432210                                  


Q ss_pred             EEcCCCCeeEEEecCCccEEE-EEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283          130 FMWDSGTNVGEFDGHSRRVLS-CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~-~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                                .+.+|.+.|.. +.|.+.+..++++|+.|.++.+|..........++||...|.|+....++. +++||.
T Consensus        52 ----------~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSW  120 (745)
T KOG0301|consen   52 ----------AFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSW  120 (745)
T ss_pred             ----------ecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEeccc
Confidence                      12233333333 455444445799999999999999887778888999999999999888887 899999


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      |.++++|-  .+++...+   .+|+..|.++.+-|++ .++|||.|.+|++|.-.     +.                  
T Consensus       121 D~TakvW~--~~~l~~~l---~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~-----~~------------------  171 (745)
T KOG0301|consen  121 DSTAKVWR--IGELVYSL---QGHTASVWAVASLPEN-TYVTGSADKTIKLWKGG-----TL------------------  171 (745)
T ss_pred             ccceEEec--chhhhccc---CCcchheeeeeecCCC-cEEeccCcceeeeccCC-----ch------------------
Confidence            99999995  34444333   5899999999999988 77899999999999631     11                  


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~  368 (609)
                                                  ...+.||...|..+++.+.                                 
T Consensus       172 ----------------------------l~tf~gHtD~VRgL~vl~~---------------------------------  190 (745)
T KOG0301|consen  172 ----------------------------LKTFSGHTDCVRGLAVLDD---------------------------------  190 (745)
T ss_pred             ----------------------------hhhhccchhheeeeEEecC---------------------------------
Confidence                                        1345677777766655422                                 


Q ss_pred             ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283          369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF  448 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (609)
                                                                                                      
T Consensus       191 --------------------------------------------------------------------------------  190 (745)
T KOG0301|consen  191 --------------------------------------------------------------------------------  190 (745)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK  528 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~  528 (609)
                                 ..+++++.||.|++|++.++.+   ..+.+|+.-|.+++...++..+++++.|++++||+..   ....
T Consensus       191 -----------~~flScsNDg~Ir~w~~~ge~l---~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q  253 (745)
T KOG0301|consen  191 -----------SHFLSCSNDGSIRLWDLDGEVL---LEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQ  253 (745)
T ss_pred             -----------CCeEeecCCceEEEEeccCcee---eeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEE
Confidence                       1255666667777777654443   3567899999999988999999999999999999854   2223


Q ss_pred             eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       529 ~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      .+......|+++.+-++|. +++|+.||-|+||..+
T Consensus       254 ~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  254 VITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVD  288 (745)
T ss_pred             EEecCccceEEEEEeeCCC-EEEeccCceEEEEEec
Confidence            3333455899999998888 5789999999999865

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=2.4e-26  Score=206.63  Aligned_cols=282  Identities=18%  Similarity=0.295  Sum_probs=206.4

Q ss_pred             eeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283          182 LSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW  260 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw  260 (609)
                      ..+.||.+.|.|++=+|.. ..+++|+.||.|+|||....+++.++   .+|.+.|..|++..  ..++++|.|.+|+.|
T Consensus        60 ~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f---~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~w  134 (433)
T KOG0268|consen   60 GSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTF---KAHEGLVRGICVTQ--TSFFTVGDDKTVKQW  134 (433)
T ss_pred             hhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhee---ecccCceeeEEecc--cceEEecCCcceeee
Confidence            3467999999999999986 67899999999999999988888777   47999999999976  678899999999999


Q ss_pred             ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283          261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI  340 (609)
Q Consensus       261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  340 (609)
                      .+..    ...+++...                                               ..+..+..+ ..+..+
T Consensus       135 k~~~----~p~~tilg~-----------------------------------------------s~~~gIdh~-~~~~~F  162 (433)
T KOG0268|consen  135 KIDG----PPLHTILGK-----------------------------------------------SVYLGIDHH-RKNSVF  162 (433)
T ss_pred             eccC----Ccceeeecc-----------------------------------------------ccccccccc-cccccc
Confidence            8763    222222110                                               011111111 122467


Q ss_pred             EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283          341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY  420 (609)
Q Consensus       341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (609)
                      +|||.  .|.+|+....          .++..+                                         ...   
T Consensus       163 aTcGe--~i~IWD~~R~----------~Pv~sm-----------------------------------------swG---  186 (433)
T KOG0268|consen  163 ATCGE--QIDIWDEQRD----------NPVSSM-----------------------------------------SWG---  186 (433)
T ss_pred             cccCc--eeeecccccC----------Ccccee-----------------------------------------ecC---
Confidence            77765  4677864311          011000                                         000   


Q ss_pred             CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEE
Q 007283          421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS-EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY  499 (609)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~  499 (609)
                                                ...+.++.++|... .|++|..|+.|.+||++......+.++.   -.-+.|+|
T Consensus       187 --------------------------~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~---mRTN~Isw  237 (433)
T KOG0268|consen  187 --------------------------ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT---MRTNTICW  237 (433)
T ss_pred             --------------------------CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee---ccccceec
Confidence                                      01256667777655 4666679999999999877655444433   24467899


Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccC
Q 007283          500 SPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLG  579 (609)
Q Consensus       500 s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~  579 (609)
                      +|+.--+++|+.|..++.+|...-...+.....|...|..++|||-|+-+++||.|++|+||.+..+. .+-.-..--..
T Consensus       238 nPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~-SRdiYhtkRMq  316 (433)
T KOG0268|consen  238 NPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH-SRDIYHTKRMQ  316 (433)
T ss_pred             CccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc-chhhhhHhhhh
Confidence            99999999999999999999877666666677899999999999999999999999999999987533 22221111234


Q ss_pred             CeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          580 GVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       580 ~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      .|.||.|| |..+++|||.|++|++|..
T Consensus       317 ~V~~Vk~S~Dskyi~SGSdd~nvRlWka  344 (433)
T KOG0268|consen  317 HVFCVKYSMDSKYIISGSDDGNVRLWKA  344 (433)
T ss_pred             eeeEEEEeccccEEEecCCCcceeeeec
Confidence            68999999 8899999999999999975

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=211.14  Aligned_cols=290  Identities=18%  Similarity=0.232  Sum_probs=198.8

Q ss_pred             cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe----ecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR----VLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~----~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      +.+|..-|+++++.|.|..++||+-|.+|+.||+..-....+.|+    .-...|..++|||-|..++++...   ...+
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~---aqak  239 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS---AQAK  239 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC---ccee
Confidence            667888899999999999999999999999999974221111122    235679999999998877776532   1234


Q ss_pred             EEEcCCCC------------eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee-ee-----ccCcccc
Q 007283          129 AFMWDSGT------------NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-LS-----HRGHSNF  190 (609)
Q Consensus       129 ~~~~~~~~------------~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~-~~-----~~~h~~~  190 (609)
                      +++.+.-.            .+..-+||...+++..|+|.....|.||+.|+++++|++...+.. ..     ..+..-+
T Consensus       240 l~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~  319 (641)
T KOG0772|consen  240 LLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVP  319 (641)
T ss_pred             EEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccC
Confidence            44444211            122346999999999999999889999999999999997654322 11     2345568


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCcc--ceEEEEECCCCCeEEEEeCCCcEEEeecccCCCC
Q 007283          191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKG--SVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG  268 (609)
Q Consensus       191 v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~--~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~  268 (609)
                      ++.++|+|||.+||+|+.||.|.+|+......--.+...++|..  .|+|+.||+||++|++-|.|+++++||++..  .
T Consensus       320 ~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~--k  397 (641)
T KOG0772|consen  320 VTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF--K  397 (641)
T ss_pred             ceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc--c
Confidence            89999999999999999999999999643322222222357877  8999999999999999999999999999742  2


Q ss_pred             ceEEEeccCCCCCccceEEEEEEc--CCeEEEEEc------CCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283          269 KLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVSL------GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI  340 (609)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~------~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  340 (609)
                      +.+.+...-..   ......|+|+  ..++++++.      .|++.+|+....... ..+.-....|..+.|++.-+ +|
T Consensus       398 kpL~~~tgL~t---~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v-~ki~i~~aSvv~~~WhpkLN-Qi  472 (641)
T KOG0772|consen  398 KPLNVRTGLPT---PFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTV-YKIDISTASVVRCLWHPKLN-QI  472 (641)
T ss_pred             cchhhhcCCCc---cCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeE-EEecCCCceEEEEeecchhh-he
Confidence            22222111100   0011223444  335555543      366777775443221 22223356677778876543 56


Q ss_pred             EEEecCCcEEEE
Q 007283          341 LSSSYDGLIVKW  352 (609)
Q Consensus       341 ~t~s~dg~i~~W  352 (609)
                      ..++.||+++++
T Consensus       473 ~~gsgdG~~~vy  484 (641)
T KOG0772|consen  473 FAGSGDGTAHVY  484 (641)
T ss_pred             eeecCCCceEEE
Confidence            667778998876

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=3.2e-24  Score=217.30  Aligned_cols=208  Identities=13%  Similarity=0.210  Sum_probs=167.8

Q ss_pred             ccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCce------eeEEEeecccceeEEEECCCC-CEEEEEECCCC
Q 007283           52 IYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHV------LKKEFRVLSGRIDDLQWSPDG-LRIVACGDGKG  123 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~------~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~  123 (609)
                      .+.+|.+.|++++|+| ++++||+|+.|++|+|||+.++..      ....+.+|...|.+++|+|++ ..|++++.+. 
T Consensus        70 ~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg-  148 (493)
T PTZ00421         70 ILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM-  148 (493)
T ss_pred             eEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC-
Confidence            4789999999999999 899999999999999999976421      234577899999999999986 5677766433 


Q ss_pred             cceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccc-eEEEEEcCCCCE
Q 007283          124 KSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNF-VNCVRFSPDGSK  202 (609)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~-v~~l~~s~dg~~  202 (609)
                        .+++|+...+..+..+.+|...|.+++|+|++. .+++++.|+.+++||...++....+.+|... +..+.|.+++..
T Consensus       149 --tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~  225 (493)
T PTZ00421        149 --VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDL  225 (493)
T ss_pred             --EEEEEECCCCeEEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCe
Confidence              578888888888888999999999999999987 4999999999999999988888888888764 456789998887


Q ss_pred             EEEEe----CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe-CCCcEEEeeccc
Q 007283          203 FISVS----SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS-ADKSAKVWDISE  264 (609)
Q Consensus       203 l~s~~----~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~d~~i~iwd~~~  264 (609)
                      |++++    .|+.+++||.++......... ..+...+....|+|++.+|++++ .|+.|++||+..
T Consensus       226 ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~-~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~  291 (493)
T PTZ00421        226 IITLGCSKSQQRQIMLWDTRKMASPYSTVD-LDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMN  291 (493)
T ss_pred             EEEEecCCCCCCeEEEEeCCCCCCceeEec-cCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeC
Confidence            77765    478999999876543221111 12334566778999999999887 599999999974

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1e-24  Score=191.74  Aligned_cols=274  Identities=20%  Similarity=0.318  Sum_probs=194.1

Q ss_pred             cccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          187 HSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTA-DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       187 h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      ..+.|.+|+|||. ..+++.+|.|++|++|+++.. ..+.  .....|.++|.+++|+.||..+++|+-|+.+++||+..
T Consensus        26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             cccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            4567999999994 557778999999999998874 3332  22346899999999999999999999999999999863


Q ss_pred             CCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCC-CCEEEEE
Q 007283          265 DNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNID-PKVILSS  343 (609)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~t~  343 (609)
                      +   +.                                               .+...|...|..+.+.... -..++||
T Consensus       104 ~---Q~-----------------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl~TG  133 (347)
T KOG0647|consen  104 G---QV-----------------------------------------------SQVAAHDAPVKTCHWVPGMNYQCLVTG  133 (347)
T ss_pred             C---Ce-----------------------------------------------eeeeecccceeEEEEecCCCcceeEec
Confidence            2   11                                               1223477777777777432 2578999


Q ss_pred             ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcE
Q 007283          344 SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL  423 (609)
Q Consensus       344 s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (609)
                      |.|.+|+.||........ .....++..+.......++.+..+..|..+.+++.-..+.                     
T Consensus       134 SWDKTlKfWD~R~~~pv~-t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k---------------------  191 (347)
T KOG0647|consen  134 SWDKTLKFWDTRSSNPVA-TLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFK---------------------  191 (347)
T ss_pred             ccccceeecccCCCCeee-eeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhh---------------------
Confidence            999999999875321111 0111122222222233344455555555555543221000                     


Q ss_pred             EEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCC---------ce
Q 007283          424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG---------AV  494 (609)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~---------~i  494 (609)
                                       ...-.+++.+.|+++.+|....|.|+-+|.+.+..+..+.......++.|..         .|
T Consensus       192 -----------------~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaV  254 (347)
T KOG0647|consen  192 -----------------RIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAV  254 (347)
T ss_pred             -----------------hhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEe
Confidence                             0001134568899999999999999999999999997754344566777763         58


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEE
Q 007283          495 SVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATG  552 (609)
Q Consensus       495 ~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~  552 (609)
                      ++|+|.|.-..|++++.||+.-+||-.. +.+++....|..+|+|++|+.+|.++|-+
T Consensus       255 Nsi~FhP~hgtlvTaGsDGtf~FWDkda-r~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  255 NSIAFHPVHGTLVTAGSDGTFSFWDKDA-RTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             cceEeecccceEEEecCCceEEEecchh-hhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            8999999999999999999999999543 33455667799999999999999988755

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.9e-23  Score=212.37  Aligned_cols=124  Identities=18%  Similarity=0.271  Sum_probs=105.4

Q ss_pred             CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc--------eeeeccCcccceEEEEEcCCCCE-EEEE
Q 007283          136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--------FKLSHRGHSNFVNCVRFSPDGSK-FISV  206 (609)
Q Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~--------~~~~~~~h~~~v~~l~~s~dg~~-l~s~  206 (609)
                      ..+..+.+|.+.|.+++|+|+...+|++|+.|+.|++|+.+...        ....+.+|...|.+++|+|++.. |+++
T Consensus        65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg  144 (568)
T PTZ00420         65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS  144 (568)
T ss_pred             ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence            44566889999999999999855579999999999999986432        22356789999999999999875 5789


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +.|++++|||+++++.+..+    .|...|.+++|+|+|.+|++++.|++|++||++
T Consensus       145 S~DgtIrIWDl~tg~~~~~i----~~~~~V~SlswspdG~lLat~s~D~~IrIwD~R  197 (568)
T PTZ00420        145 GFDSFVNIWDIENEKRAFQI----NMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPR  197 (568)
T ss_pred             eCCCeEEEEECCCCcEEEEE----ecCCcEEEEEECCCCCEEEEEecCCEEEEEECC
Confidence            99999999999988766554    255789999999999999999999999999986

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.4e-24  Score=209.65  Aligned_cols=275  Identities=20%  Similarity=0.303  Sum_probs=214.8

Q ss_pred             EEEECCCCCEEEEEECCCCcceEEEEEcC--CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee
Q 007283          105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL  182 (609)
Q Consensus       105 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~  182 (609)
                      -+.||..+...  ++.+.     .++.|+  .+........+...|+++.|+++|.. ||+|..++.+.+||....+...
T Consensus       182 lldWss~n~la--Valg~-----~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~  253 (484)
T KOG0305|consen  182 LLDWSSANVLA--VALGQ-----SVYLWSASSGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTR  253 (484)
T ss_pred             HhhcccCCeEE--EEecc-----eEEEEecCCCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhccccc
Confidence            46788655433  33333     255665  34433333444789999999999985 9999999999999999888888


Q ss_pred             eccC-cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          183 SHRG-HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       183 ~~~~-h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      .+.+ |...|-+++|.  +..+.+|+.|+.|..+|++..+.....  ..+|...|..+.|++|+.+||+|+.|+.+.|||
T Consensus       254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~--~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd  329 (484)
T KOG0305|consen  254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVST--LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWD  329 (484)
T ss_pred             cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhh--hhcccceeeeeEECCCCCeeccCCCccceEecc
Confidence            8888 99999999998  557899999999999999988766551  358999999999999999999999999999999


Q ss_pred             cccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283          262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL  341 (609)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  341 (609)
                      ....                                                 .+...+..|...|.+++|++-.+.+||
T Consensus       330 ~~~~-------------------------------------------------~p~~~~~~H~aAVKA~awcP~q~~lLA  360 (484)
T KOG0305|consen  330 GLSP-------------------------------------------------EPKFTFTEHTAAVKALAWCPWQSGLLA  360 (484)
T ss_pred             CCCc-------------------------------------------------cccEEEeccceeeeEeeeCCCccCceE
Confidence            6311                                                 112345569999999999988888999


Q ss_pred             EEe--cCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeecc
Q 007283          342 SSS--YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALH  419 (609)
Q Consensus       342 t~s--~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (609)
                      +|+  .|++|++|+...+..                                                            
T Consensus       361 sGGGs~D~~i~fwn~~~g~~------------------------------------------------------------  380 (484)
T KOG0305|consen  361 TGGGSADRCIKFWNTNTGAR------------------------------------------------------------  380 (484)
T ss_pred             EcCCCcccEEEEEEcCCCcE------------------------------------------------------------
Confidence            866  799999997643210                                                            


Q ss_pred             CCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEE--eCCCcEEEEEecCCeeeeeEEEecCCCceEEE
Q 007283          420 YPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG--SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVI  497 (609)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~g--s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v  497 (609)
                                           +..+.....|..+.+++..+.++++  ..+..|.||++.+-.  ....+.+|...|..+
T Consensus       381 ---------------------i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~--~~~~l~gH~~RVl~l  437 (484)
T KOG0305|consen  381 ---------------------IDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMK--LVAELLGHTSRVLYL  437 (484)
T ss_pred             ---------------------ecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccc--eeeeecCCcceeEEE
Confidence                                 0111112347778888888776664  556799999987643  356789999999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCC
Q 007283          498 RYSPDVSMFASGDVNREAIVWDRVSR  523 (609)
Q Consensus       498 ~~s~~~~~l~s~s~d~~v~iwd~~~~  523 (609)
                      ++||||..+++|+.|.++++|++-..
T Consensus       438 a~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  438 ALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             EECCCCCEEEEecccCcEEeccccCC
Confidence            99999999999999999999997653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=7e-25  Score=224.42  Aligned_cols=209  Identities=22%  Similarity=0.327  Sum_probs=158.4

Q ss_pred             CcCce-eEEeecCCCCeEEEeC---CCEEEEEeCCC------------CccccccccCCCCcEEEEECCCCCEEEEEeCC
Q 007283           15 ERGRG-ILISGHPKSNSILYTN---GRSVIILDLSN------------PLQVSIYGEHAYPATVARFSPNGEWIASADVS   78 (609)
Q Consensus        15 ~~~~~-~~~~~~~~~~~l~~~~---~~~~~i~~~~~------------~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d   78 (609)
                      |++.. +.|..||||..+++++   ++.++||+...            ++.+.....|.+.|+|++|||||+|||+|+.|
T Consensus        11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD   90 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD   90 (942)
T ss_pred             cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence            34444 4899999999888765   24556887541            33445567899999999999999999999999


Q ss_pred             CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCC
Q 007283           79 GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP  158 (609)
Q Consensus        79 ~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (609)
                      +-|.||+.... .           ...+..+..|.                ...+.-+....+.+|...|..+.|+|++.
T Consensus        91 ~~v~iW~~~~~-~-----------~~~~fgs~g~~----------------~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~  142 (942)
T KOG0973|consen   91 RLVMIWERAEI-G-----------SGTVFGSTGGA----------------KNVESWKVVSILRGHDSDVLDVNWSPDDS  142 (942)
T ss_pred             ceEEEeeeccc-C-----------Ccccccccccc----------------cccceeeEEEEEecCCCccceeccCCCcc
Confidence            99999987641 0           11111111111                01112245667889999999999999887


Q ss_pred             eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCC---CCccc
Q 007283          159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED---GHKGS  235 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---~h~~~  235 (609)
                      + +|+++.|+.|.+|+..+++....+.+|...|..+.|.|-|++||+=++|++++||...+......+....   .-...
T Consensus       143 ~-lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~  221 (942)
T KOG0973|consen  143 L-LVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTF  221 (942)
T ss_pred             E-EEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcce
Confidence            5 9999999999999999999999999999999999999999999999999999999865543333332111   12345


Q ss_pred             eEEEEECCCCCeEEEEe
Q 007283          236 VYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       236 V~~l~~spd~~~l~s~s  252 (609)
                      +..+.|||||.+|++.-
T Consensus       222 f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  222 FLRLSWSPDGHHLASPN  238 (942)
T ss_pred             eeecccCCCcCeecchh
Confidence            78999999999999874

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.3e-23  Score=182.81  Aligned_cols=291  Identities=18%  Similarity=0.233  Sum_probs=218.7

Q ss_pred             cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283           53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  132 (609)
                      |..-.+.|+++.|+++|.+|++++.|.+++|+|..+++.++ .+....-.+..++|......++.... +....+|+...
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~-ti~skkyG~~~~~Fth~~~~~i~sSt-k~d~tIryLsl   87 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK-TINSKKYGVDLACFTHHSNTVIHSST-KEDDTIRYLSL   87 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee-EeecccccccEEEEecCCceEEEccC-CCCCceEEEEe
Confidence            44446679999999999999999999999999999887543 34444557888999887766666553 44457888888


Q ss_pred             CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      .+++.+.-|.||...|.++..+|-+. .+++++.|.++++||.+..++...+.-..  -..++|.|+|-.+|++.....|
T Consensus        88 ~dNkylRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~--~pi~AfDp~GLifA~~~~~~~I  164 (311)
T KOG1446|consen   88 HDNKYLRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSG--RPIAAFDPEGLIFALANGSELI  164 (311)
T ss_pred             ecCceEEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCC--CcceeECCCCcEEEEecCCCeE
Confidence            89999999999999999999999986 59999999999999998766654443322  3457899999999999888899


Q ss_pred             EEEeCCCCc--cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283          213 IIYDGKTAD--KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL  290 (609)
Q Consensus       213 ~iwd~~~~~--~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (609)
                      ++||.+.-.  ...++....+-..+.+.+.|||||++|+.+...+.+++.|.-   .|..+.++...........-.++.
T Consensus       165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf---~G~~~~tfs~~~~~~~~~~~a~ft  241 (311)
T KOG1446|consen  165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAF---DGTVKSTFSGYPNAGNLPLSATFT  241 (311)
T ss_pred             EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEcc---CCcEeeeEeeccCCCCcceeEEEC
Confidence            999987643  222333333456789999999999999999999999999875   455666664433222111222233


Q ss_pred             EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeC-CCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSG-HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       291 ~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                      .+++++++++.||+|++|++.... ....+.+ +...+.++.|.   |+..+-.+.+..+.+|...
T Consensus       242 Pds~Fvl~gs~dg~i~vw~~~tg~-~v~~~~~~~~~~~~~~~fn---P~~~mf~sa~s~l~fw~p~  303 (311)
T KOG1446|consen  242 PDSKFVLSGSDDGTIHVWNLETGK-KVAVLRGPNGGPVSCVRFN---PRYAMFVSASSNLVFWLPD  303 (311)
T ss_pred             CCCcEEEEecCCCcEEEEEcCCCc-EeeEecCCCCCCccccccC---CceeeeeecCceEEEEecc
Confidence            456788899999999999986443 3344555 67788888764   3566666778889999654

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.1e-25  Score=205.90  Aligned_cols=290  Identities=22%  Similarity=0.317  Sum_probs=226.6

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce-eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV-LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      ...+..|.+.|..+.|-++...|++|+.|.-|++|++...+. +...+.+..++|+.+.|.++++++++.+.++   ..+
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~---~~r  244 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDK---NLR  244 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCC---cee
Confidence            345678999999999999999999999999999999886652 2345666678899999999999999887655   367


Q ss_pred             EEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283          129 AFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                      +|..+......++.+|++.|+++.|..... ++++|++|.+++.||.....+..+... ...+..+..+  ...++++-.
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~-~vVsgs~DRtiK~WDl~k~~C~kt~l~-~S~cnDI~~~--~~~~~SgH~  320 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHS-RVVSGSADRTIKLWDLQKAYCSKTVLP-GSQCNDIVCS--ISDVISGHF  320 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhcccc-ceeeccccchhhhhhhhhhheeccccc-cccccceEec--ceeeeeccc
Confidence            888888888889999999999999987665 499999999999999887666655332 2334555554  446788889


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      |++|++||.++..+...+.   . .+.|+++..++++..+++++.|.++.+.|++.   ....+++.             
T Consensus       321 DkkvRfwD~Rs~~~~~sv~---~-gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt---~eI~~~~s-------------  380 (459)
T KOG0288|consen  321 DKKVRFWDIRSADKTRSVP---L-GGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT---KEIRQTFS-------------  380 (459)
T ss_pred             ccceEEEeccCCceeeEee---c-CcceeeEeeccCCeEEeeecCCCceeeeeccc---ccEEEEee-------------
Confidence            9999999999988776653   2 35899999999999999999999999999862   11111110             


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~  368 (609)
                                                                   ..  .+ -++                         
T Consensus       381 ---------------------------------------------A~--g~-k~a-------------------------  387 (459)
T KOG0288|consen  381 ---------------------------------------------AE--GF-KCA-------------------------  387 (459)
T ss_pred             ---------------------------------------------cc--cc-ccc-------------------------
Confidence                                                         00  00 000                         


Q ss_pred             ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283          369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF  448 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (609)
                                                                                                     .
T Consensus       388 -------------------------------------------------------------------------------s  388 (459)
T KOG0288|consen  388 -------------------------------------------------------------------------------S  388 (459)
T ss_pred             -------------------------------------------------------------------------------c
Confidence                                                                                           0


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEE
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW  518 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iw  518 (609)
                      ..+.+.|||++.|+|+||.||.|+||++.++++............|++++|+|-|..+++++.++.+.+|
T Consensus       389 DwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  389 DWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             ccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            1355678999999999999999999999998875433333223379999999999999999999999999

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.94  E-value=2.8e-24  Score=189.38  Aligned_cols=297  Identities=15%  Similarity=0.184  Sum_probs=216.7

Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-----------------C-ceeeeccCcccceEEEEEcCCC
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-----------------F-KFKLSHRGHSNFVNCVRFSPDG  200 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-----------------~-~~~~~~~~h~~~v~~l~~s~dg  200 (609)
                      ..+..|..++.+.+|+|||.+ +|||+.|..|++.|.+.                 . ..++++..|...|+++.|+|..
T Consensus       106 ~ylt~HK~~cR~aafs~DG~l-vATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre  184 (430)
T KOG0640|consen  106 KYLTSHKSPCRAAAFSPDGSL-VATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE  184 (430)
T ss_pred             EEEeecccceeeeeeCCCCcE-EEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh
Confidence            346789999999999999985 99999999999998651                 0 2356678899999999999999


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCC
Q 007283          201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG  280 (609)
Q Consensus       201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  280 (609)
                      ..|++++.|++++++|.........++.. .-...|.+++|+|.|.+|+.|..-.++++||++.   .   +.+...   
T Consensus       185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T---~---Qcfvsa---  254 (430)
T KOG0640|consen  185 TILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNT---Y---QCFVSA---  254 (430)
T ss_pred             heEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCceEEEecCCCceeEEeccc---e---eEeeec---
Confidence            99999999999999998654332222211 2345799999999999999999999999999862   1   111000   


Q ss_pred             CccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccc
Q 007283          281 GVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG  360 (609)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~  360 (609)
                                                           ..-..|+..|.++.+++ .+++.+|+|.||.|++||-..+...
T Consensus       255 -------------------------------------nPd~qht~ai~~V~Ys~-t~~lYvTaSkDG~IklwDGVS~rCv  296 (430)
T KOG0640|consen  255 -------------------------------------NPDDQHTGAITQVRYSS-TGSLYVTASKDGAIKLWDGVSNRCV  296 (430)
T ss_pred             -------------------------------------CcccccccceeEEEecC-CccEEEEeccCCcEEeeccccHHHH
Confidence                                                 01135889999999874 5679999999999999964322110


Q ss_pred             eeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCee
Q 007283          361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEV  440 (609)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (609)
                      .....                                                                           
T Consensus       297 ~t~~~---------------------------------------------------------------------------  301 (430)
T KOG0640|consen  297 RTIGN---------------------------------------------------------------------------  301 (430)
T ss_pred             HHHHh---------------------------------------------------------------------------
Confidence            00000                                                                           


Q ss_pred             eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCc---eEEEEECCCCCEEEEE-eCCCeEE
Q 007283          441 VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGA---VSVIRYSPDVSMFASG-DVNREAI  516 (609)
Q Consensus       441 ~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~---i~~v~~s~~~~~l~s~-s~d~~v~  516 (609)
                         -..+..+.+..|+-||+++.+.+.|..+++|++.++......+-.+-.+.   -+...|+....|+..- -..+.+-
T Consensus       302 ---AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slc  378 (430)
T KOG0640|consen  302 ---AHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLC  378 (430)
T ss_pred             ---hcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCcee
Confidence               00012466777899999999999999999999988865432222211221   1223355555555443 2456688


Q ss_pred             EEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283          517 VWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       517 iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                      -||..+.........+|++.+.++.-||.+.-+.|++.|-..++|-
T Consensus       379 sWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy  424 (430)
T KOG0640|consen  379 SWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY  424 (430)
T ss_pred             eccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence            8998776655445578999999999999999999999999999995

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=3.2e-24  Score=217.31  Aligned_cols=277  Identities=26%  Similarity=0.394  Sum_probs=228.2

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG  135 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  135 (609)
                      |...+.+..|.  +.++++++.|.+|++||..++..+...+.+|.+.|.+++|...+..|+++..++   .+++|+..++
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~---t~rvWd~~sg  281 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDK---TERVWDCSTG  281 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCC---cEEeEecCCC
Confidence            45668888888  678999999999999999998877777999999999999998677788766444   5788998899


Q ss_pred             CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      .+..++.+|..-|.++...+   ..+++|+.|.++++|+.+++.+...+.+|..+|.++.++  +.++++|+.|++|++|
T Consensus       282 ~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW  356 (537)
T KOG0274|consen  282 ECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVW  356 (537)
T ss_pred             cEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEE
Confidence            99999999999999998765   368889999999999999999999999999999999997  6799999999999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF  295 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (609)
                      |..+++++..+.   +|++.|+++.+.+. .++++|+.|++|++||+....  +.+.++....     ..+......++.
T Consensus       357 ~~~~~~cl~sl~---gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~-----~~v~~l~~~~~~  425 (537)
T KOG0274|consen  357 DPRTGKCLKSLS---GHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHT-----SLVSSLLLRDNF  425 (537)
T ss_pred             Ehhhceeeeeec---CCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCc-----ccccccccccce
Confidence            999999988874   89999999988765 889999999999999997421  3444443221     112223345778


Q ss_pred             EEEEEcCCcEEEEeCCCCCCCceeeeC-CCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283          296 LVIVSLGGTISIFSANDLEKSPLQLSG-HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG  357 (609)
Q Consensus       296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~  357 (609)
                      +++.+.|++|++|+..+.+ ....+.+ |...|..+...   ...+++++.|+++++|++..+
T Consensus       426 Lvs~~aD~~Ik~WD~~~~~-~~~~~~~~~~~~v~~l~~~---~~~il~s~~~~~~~l~dl~~~  484 (537)
T KOG0274|consen  426 LVSSSADGTIKLWDAEEGE-CLRTLEGRHVGGVSALALG---KEEILCSSDDGSVKLWDLRSG  484 (537)
T ss_pred             eEeccccccEEEeecccCc-eeeeeccCCcccEEEeecC---cceEEEEecCCeeEEEecccC
Confidence            9999999999999877543 3345566 66788777753   357999999999999987654

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.94  E-value=3.2e-23  Score=199.16  Aligned_cols=152  Identities=21%  Similarity=0.351  Sum_probs=118.9

Q ss_pred             CCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCee-----eeeEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEE
Q 007283          447 RFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTL-----TEEAVLEKHRGAVSVIRYSPD-VSMFASGDVNREAIVWD  519 (609)
Q Consensus       447 ~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~-----~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd  519 (609)
                      +..|+.+.+.| |.+.||+++.||.|++|.+..+.+     ....++..|...|.++.|+|= ...|++++.|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            34577788888 778899999999999999976643     345678999999999999996 57889999999999999


Q ss_pred             ccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecccc-CCeEEEEEc-CCCeEEEEeC
Q 007283          520 RVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHL-GGVYGLAFT-DEHSVVSSGE  597 (609)
Q Consensus       520 ~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~-~~v~~~~~s-~~~~l~s~s~  597 (609)
                      +.+..... .+.+|++.|..++|||||+++||.+.||+|+||+-.... +.+.--.|.. .+=..+.|. |+++++..|-
T Consensus       707 l~~~~~~~-~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e-~pv~Eg~gpvgtRgARi~wacdgr~viv~Gf  784 (1012)
T KOG1445|consen  707 LANAKLYS-RLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSRE-QPVYEGKGPVGTRGARILWACDGRIVIVVGF  784 (1012)
T ss_pred             hhhhhhhh-eeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCC-CccccCCCCccCcceeEEEEecCcEEEEecc
Confidence            98876543 478999999999999999999999999999999875422 1111111111 223456676 8999988887


Q ss_pred             CCc
Q 007283          598 DAC  600 (609)
Q Consensus       598 D~~  600 (609)
                      |++
T Consensus       785 dk~  787 (1012)
T KOG1445|consen  785 DKS  787 (1012)
T ss_pred             ccc
Confidence            764

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6e-25  Score=212.00  Aligned_cols=339  Identities=19%  Similarity=0.247  Sum_probs=235.9

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCce-----eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC--CeeE
Q 007283           67 PNGEWIASADVSGTVRIWGAHNDHV-----LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG--TNVG  139 (609)
Q Consensus        67 p~g~~las~~~d~~i~vWd~~~~~~-----~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~--~~~~  139 (609)
                      |+++||.||+.||.|++|+......     ....+..|+..|..++.--+|+.|++++.+.   .+++|.-...  .+..
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDt---TVK~W~~~~~~~~c~s  111 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDT---TVKVWNAHKDNTFCMS  111 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCc---eEEEeecccCcchhHh
Confidence            6889999999999999998864332     2334667888999999999999999988655   3455554444  4566


Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce--e--------eecc-CcccceEEEEEcCCCCEEEEEeC
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF--K--------LSHR-GHSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~--~--------~~~~-~h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                      ++..|.+.|.++++...+...+|+||-|+.|++||...+..  .        ..+. |+...|.+++-++.|..|++|+.
T Consensus       112 tir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt  191 (735)
T KOG0308|consen  112 TIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT  191 (735)
T ss_pred             hhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence            78899999999999434445799999999999999875521  1        1233 88999999999999999999999


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      .+.+++||.++.+.+..+   .||+..|..+..++||+.++++|.||+|++||+..   .+...                
T Consensus       192 ek~lr~wDprt~~kimkL---rGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgq---QrCl~----------------  249 (735)
T KOG0308|consen  192 EKDLRLWDPRTCKKIMKL---RGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQ---QRCLA----------------  249 (735)
T ss_pred             ccceEEeccccccceeee---eccccceEEEEEcCCCCeEeecCCCceEEeeeccc---cceee----------------
Confidence            999999999999988777   39999999999999999999999999999999862   22221                


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~  368 (609)
                                                    ++..|.+.|+++...+ +=..+++|+.||.|..=++.+........+++.
T Consensus       250 ------------------------------T~~vH~e~VWaL~~~~-sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da  298 (735)
T KOG0308|consen  250 ------------------------------TYIVHKEGVWALQSSP-SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA  298 (735)
T ss_pred             ------------------------------eEEeccCceEEEeeCC-CcceEEecCCCCcEEecccCCchhheEeecCCC
Confidence                                          2334677777777652 225789999999998776654322222222233


Q ss_pred             ceeEeee--eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEee-CCeeeEEec
Q 007283          369 QIKCFAA--IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR-GAEVVSTIN  445 (609)
Q Consensus       369 ~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  445 (609)
                      ++..+..  .++.+.++..|..|.+|.......                +.... +.....++....... ....-..+.
T Consensus       299 Pv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~----------------l~~s~-~~~~~~T~~~~~~~~~~~tp~~vi~  361 (735)
T KOG0308|consen  299 PVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIA----------------LSVSG-DLDFFSTDSNNHSCDLTNTPDSVIP  361 (735)
T ss_pred             chhhhhhccccCCceeeeccccceecCCccccc----------------cccCC-CCCcccccCCCccccccCCCceecc
Confidence            3333322  245567888899999987543221                00000 000011111111110 001111222


Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283          446 LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG  478 (609)
Q Consensus       446 ~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~  478 (609)
                      .+..+...++-.|.+++++-..+|.+.+||+-.
T Consensus       362 Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwDIl~  394 (735)
T KOG0308|consen  362 GGAAIKKHAMLNDKRHVLTKDAKGNVALWDILA  394 (735)
T ss_pred             CchhhhhhhhhcCcceEeeecCCCCEEEEEeee
Confidence            334455556677899999999999999999854

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=3.1e-24  Score=208.72  Aligned_cols=282  Identities=21%  Similarity=0.283  Sum_probs=215.4

Q ss_pred             ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEE-EEECC-CCCeEEEEeCCCc
Q 007283          179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA-VSWSP-DGKQVLTASADKS  256 (609)
Q Consensus       179 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~sp-d~~~l~s~s~d~~  256 (609)
                      +..+.+.||...|..+++.+.. .++++|.|+++++|+...++.+.... ..+|.+.|.. +++-+ ++-.|++|+.|.+
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~-~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHA-FEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             eeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccccee-cccCcceeeccceeccccCcceEeecccce
Confidence            4566788999999988887665 78999999999999876655544322 3467777766 78775 4556999999999


Q ss_pred             EEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCC
Q 007283          257 AKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNID  336 (609)
Q Consensus       257 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  336 (609)
                      +.+|.+..                                                 ..+...+.||..+|.++..... 
T Consensus        83 i~v~~~~~-------------------------------------------------~~P~~~LkgH~snVC~ls~~~~-  112 (745)
T KOG0301|consen   83 IIVFKLSQ-------------------------------------------------AEPLYTLKGHKSNVCSLSIGED-  112 (745)
T ss_pred             EEEEecCC-------------------------------------------------CCchhhhhccccceeeeecCCc-
Confidence            99998642                                                 1123457899999999876432 


Q ss_pred             CCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEe
Q 007283          337 PKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSV  416 (609)
Q Consensus       337 ~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (609)
                       ..++|||.|.++++|..+....                                                         
T Consensus       113 -~~~iSgSWD~TakvW~~~~l~~---------------------------------------------------------  134 (745)
T KOG0301|consen  113 -GTLISGSWDSTAKVWRIGELVY---------------------------------------------------------  134 (745)
T ss_pred             -CceEecccccceEEecchhhhc---------------------------------------------------------
Confidence             3489999999999994321000                                                         


Q ss_pred             eccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEE
Q 007283          417 ALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV  496 (609)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~  496 (609)
                                               ....|...|.+++.-|++ .+++||.|.+|++|.-  +.+  ..++.+|..-|..
T Consensus       135 -------------------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~--l~tf~gHtD~VRg  184 (745)
T KOG0301|consen  135 -------------------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTL--LKTFSGHTDCVRG  184 (745)
T ss_pred             -------------------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--Cch--hhhhccchhheee
Confidence                                     000123457888888888 7999999999999964  333  4688999999999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc
Q 007283          497 IRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA  576 (609)
Q Consensus       497 v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~  576 (609)
                      +++-|++ .|+|++.||.|++|+. +++. +..+.+|+.-|.+++..+++..+++.+.|+++++|+.+.    ..+...-
T Consensus       185 L~vl~~~-~flScsNDg~Ir~w~~-~ge~-l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~e----~~q~I~l  257 (745)
T KOG0301|consen  185 LAVLDDS-HFLSCSNDGSIRLWDL-DGEV-LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKDE----CVQVITL  257 (745)
T ss_pred             eEEecCC-CeEeecCCceEEEEec-cCce-eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecCc----eEEEEec
Confidence            9997654 5788999999999997 4443 345789999999999989999999999999999999752    2233333


Q ss_pred             ccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          577 HLGGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       577 h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ..-.||++.+....-|++|+.||.|++|..+
T Consensus       258 PttsiWsa~~L~NgDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  258 PTTSIWSAKVLLNGDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             CccceEEEEEeeCCCEEEeccCceEEEEEec
Confidence            4458999998866668999999999999876

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=8.7e-24  Score=196.25  Aligned_cols=288  Identities=21%  Similarity=0.314  Sum_probs=211.8

Q ss_pred             eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc--------------cCcC-CCCccceEEEEECCCCC
Q 007283          182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE--------------LSPE-DGHKGSVYAVSWSPDGK  246 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~--------------~~~~-~~h~~~V~~l~~spd~~  246 (609)
                      .....|..++.|++++||+++..+++.+++|.-|++.+++....              +... .+|...|.+++.||||+
T Consensus       136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk  215 (479)
T KOG0299|consen  136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK  215 (479)
T ss_pred             eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc
Confidence            44567999999999999999999999999999999888774411              1112 27889999999999999


Q ss_pred             eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCC
Q 007283          247 QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKN  326 (609)
Q Consensus       247 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~  326 (609)
                      ||++|+.|..|.||+.....                                                 ....+.+|.+.
T Consensus       216 ylatgg~d~~v~Iw~~~t~e-------------------------------------------------hv~~~~ghr~~  246 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLE-------------------------------------------------HVKVFKGHRGA  246 (479)
T ss_pred             EEEecCCCceEEEecCcccc-------------------------------------------------hhhcccccccc
Confidence            99999999999999975311                                                 11235689999


Q ss_pred             eEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccc
Q 007283          327 VTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSID  406 (609)
Q Consensus       327 v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~  406 (609)
                      |.+++|-. +...+++++.|++|++|+.+.......                                            
T Consensus       247 V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s~vet--------------------------------------------  281 (479)
T KOG0299|consen  247 VSSLAFRK-GTSELYSASADRSVKVWSIDQLSYVET--------------------------------------------  281 (479)
T ss_pred             eeeeeeec-CccceeeeecCCceEEEehhHhHHHHH--------------------------------------------
Confidence            99999864 346789999999999996542100000                                            


Q ss_pred             cCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEE
Q 007283          407 IGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV  486 (609)
Q Consensus       407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~  486 (609)
                                                          .+.++..|..+....-++-+-+|..|+++++|++....   ..+
T Consensus       282 ------------------------------------lyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~ees---qli  322 (479)
T KOG0299|consen  282 ------------------------------------LYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEES---QLI  322 (479)
T ss_pred             ------------------------------------HhCCccceeeechhcccceEEeccccceeEEEeccccc---eee
Confidence                                                00011123333334445556677899999999996543   356


Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC-----------CCCceEEEEECCCCcEEEEEeCC
Q 007283          487 LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-----------HTARINCLAWSPNNSMVATGSLD  555 (609)
Q Consensus       487 ~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-----------h~~~i~~l~~s~d~~~l~s~s~D  555 (609)
                      +.+|.+.+-|++|= +..++++||.||.|.+|++...+........           +...|++|+..|...++|+||.+
T Consensus       323 frg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~  401 (479)
T KOG0299|consen  323 FRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWS  401 (479)
T ss_pred             eeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCC
Confidence            78999999999994 6678999999999999998766543222122           23489999999999999999999


Q ss_pred             CeEEEEEcCCCCCcc--eeEeccccCCeEEEEEc-CCC-eEEEEeCCCcEEEE
Q 007283          556 TCVIIYEIDKPASSR--MTIKGAHLGGVYGLAFT-DEH-SVVSSGEDACVRVW  604 (609)
Q Consensus       556 ~~v~vw~~~~~~~~~--~~~~~~h~~~v~~~~~s-~~~-~l~s~s~D~~i~~W  604 (609)
                      |.|++|.+.....++  +.-+ .-.+.|++++|+ +++ .++..|....+=-|
T Consensus       402 G~vrLW~i~~g~r~i~~l~~l-s~~GfVNsl~f~~sgk~ivagiGkEhRlGRW  453 (479)
T KOG0299|consen  402 GCVRLWKIEDGLRAINLLYSL-SLVGFVNSLAFSNSGKRIVAGIGKEHRLGRW  453 (479)
T ss_pred             CceEEEEecCCccccceeeec-ccccEEEEEEEccCCCEEEEeccccccccee
Confidence            999999997642111  1112 256789999998 776 55667877776444

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.93  E-value=4.4e-24  Score=196.53  Aligned_cols=286  Identities=16%  Similarity=0.236  Sum_probs=215.2

Q ss_pred             CCccCcCceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283           11 VPSTERGRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND   89 (609)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~   89 (609)
                      +|+.....-+++...|..+.+.+. .+..++++|...+..+.+|.||...|+.+.|+|+-..+++++.|-.||||.+...
T Consensus       214 LH~t~~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~  293 (506)
T KOG0289|consen  214 LHSTSTPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS  293 (506)
T ss_pred             eeccCCCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccccc
Confidence            444444444455555543444444 3468999999999999999999999999999999999999999999999998765


Q ss_pred             ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec--CCccEEEEEEeeCCCeEEEEecCC
Q 007283           90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG--HSRRVLSCAFKPSRPFRIATCGED  167 (609)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~i~t~~~d  167 (609)
                      . .....+.|.++|..+..+|.|+||++.++++   ..-..+...+.++.....  ..-.+++.+|||||- +|++|..|
T Consensus       294 s-~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~---~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d  368 (506)
T KOG0289|consen  294 S-EPTSSRPHEEPVTGLSLHPTGEYLLSASNDG---TWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPD  368 (506)
T ss_pred             c-CccccccccccceeeeeccCCcEEEEecCCc---eEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCC
Confidence            4 3445678999999999999999999988654   334455556666544332  223488999999996 69999999


Q ss_pred             CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe
Q 007283          168 FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ  247 (609)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  247 (609)
                      +.+++||.........|.+|..+|..++|+.+|-+||++++|+.|++||.+.-+...++...  ....|.++.|.+.|.+
T Consensus       369 ~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~--~~~~v~s~~fD~SGt~  446 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLD--EKKEVNSLSFDQSGTY  446 (506)
T ss_pred             ceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeecc--ccccceeEEEcCCCCe
Confidence            99999999888888889999999999999999999999999999999999987766665432  2337999999999999


Q ss_pred             EEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE--cCCeEEEEEcCCcEEEEe
Q 007283          248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW--QNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       248 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~~~  309 (609)
                      |+.++.|=+|++++-...++..........+      ...+..+  ...+++.++.+..++++.
T Consensus       447 L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg------~st~v~Fg~~aq~l~s~smd~~l~~~a  504 (506)
T KOG0289|consen  447 LGIAGSDLQVYICKKKTKSWTEIKELADHSG------LSTGVRFGEHAQYLASTSMDAILRLYA  504 (506)
T ss_pred             EEeecceeEEEEEecccccceeeehhhhccc------ccceeeecccceEEeeccchhheEEee
Confidence            9999988888887744333332222111110      1111222  234667777777766664

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=4.4e-24  Score=207.86  Aligned_cols=271  Identities=22%  Similarity=0.348  Sum_probs=211.1

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecc
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLS  100 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~  100 (609)
                      .+..+ ..+.++-.-|..+++|+-.++.......-+++.|+++.++|+|++||.|-.+|+|+|||..+.+...       
T Consensus       182 lldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~-------  253 (484)
T KOG0305|consen  182 LLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTR-------  253 (484)
T ss_pred             Hhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccc-------
Confidence            34555 4567888889999999999888655555558899999999999999999999999999987654211       


Q ss_pred             cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec-CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc
Q 007283          101 GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG-HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK  179 (609)
Q Consensus       101 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~  179 (609)
                                                             .+.+ |..+|-+++|..   .++.+|+.|+.|..+|.+..+
T Consensus       254 ---------------------------------------~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~  291 (484)
T KOG0305|consen  254 ---------------------------------------TLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQ  291 (484)
T ss_pred             ---------------------------------------cccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecch
Confidence                                                   1223 667777777762   368899999999999987665


Q ss_pred             eeee-ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEe--CCC
Q 007283          180 FKLS-HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTAS--ADK  255 (609)
Q Consensus       180 ~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s--~d~  255 (609)
                      .... +.+|.+.|..+.|++|+.+||+|+.|+.+.|||....+....+   ..|.+.|.+++|+|- ..+||+|+  .|+
T Consensus       292 ~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~---~~H~aAVKA~awcP~q~~lLAsGGGs~D~  368 (484)
T KOG0305|consen  292 HVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTF---TEHTAAVKALAWCPWQSGLLATGGGSADR  368 (484)
T ss_pred             hhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEE---eccceeeeEeeeCCCccCceEEcCCCccc
Confidence            4444 8899999999999999999999999999999998666665555   379999999999995 45788875  499


Q ss_pred             cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe--EEE--EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEE
Q 007283          256 SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF--LVI--VSLGGTISIFSANDLEKSPLQLSGHMKNVTALT  331 (609)
Q Consensus       256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~  331 (609)
                      +|++||..   .+..+..+...      ..+....|...+  +++  +..++.|.+|++... .....+.+|...|..++
T Consensus       369 ~i~fwn~~---~g~~i~~vdtg------sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-~~~~~l~gH~~RVl~la  438 (484)
T KOG0305|consen  369 CIKFWNTN---TGARIDSVDTG------SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-KLVAELLGHTSRVLYLA  438 (484)
T ss_pred             EEEEEEcC---CCcEecccccC------CceeeEEEcCCCCEEEEecCCCCCcEEEEecccc-ceeeeecCCcceeEEEE
Confidence            99999987   34444443221      245566787553  333  344578999998763 34567899999999999


Q ss_pred             EecCCCCEEEEEecCCcEEEEecC
Q 007283          332 VLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       332 ~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                      +++ ++..+++|+.|.++++|..-
T Consensus       439 ~SP-dg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  439 LSP-DGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             ECC-CCCEEEEecccCcEEecccc
Confidence            875 46799999999999999653

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=2.1e-23  Score=211.28  Aligned_cols=202  Identities=18%  Similarity=0.265  Sum_probs=162.7

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee------------eEEEeecccceeEEEECC-CCCEEEEEECCC
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL------------KKEFRVLSGRIDDLQWSP-DGLRIVACGDGK  122 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~------------~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~  122 (609)
                      |-.+|+..+.++++..+++++.+.....|+...+...            ...+.+|.+.|.+++|+| |+.+|++++++.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~Dg   98 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDG   98 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCC
Confidence            3356777778888777777777777777775433211            023678899999999999 888888887644


Q ss_pred             CcceEEEEEcCCC-------CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEE
Q 007283          123 GKSLVRAFMWDSG-------TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVR  195 (609)
Q Consensus       123 ~~~~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~  195 (609)
                         .+++|+...+       ..+..+.+|...|.+++|+|++...+++++.|+.|++||..+.+....+.+|...|.+++
T Consensus        99 ---tIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421         99 ---TIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             ---EEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence               4677776543       246678999999999999998766799999999999999998888888899999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccc-eEEEEECCCCCeEEEEe----CCCcEEEeecc
Q 007283          196 FSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS-VYAVSWSPDGKQVLTAS----ADKSAKVWDIS  263 (609)
Q Consensus       196 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~-V~~l~~spd~~~l~s~s----~d~~i~iwd~~  263 (609)
                      |+|+|.+|++++.|+.++|||.++++.+..+.   +|.+. +..+.|.|++.++++++    .|+.|++||++
T Consensus       176 ~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~---~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr  245 (493)
T PTZ00421        176 WNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVE---AHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTR  245 (493)
T ss_pred             EECCCCEEEEecCCCEEEEEECCCCcEEEEEe---cCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCC
Confidence            99999999999999999999999988776553   56654 45778999988887765    47899999986

>PTZ00420 coronin; Provisional

Probab=99.93  E-value=2.7e-23  Score=211.26  Aligned_cols=222  Identities=14%  Similarity=0.158  Sum_probs=172.9

Q ss_pred             CEEEEEeCCCCccccccccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEcCCCCce-------eeEEEeecccceeEEEE
Q 007283           37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPN-GEWIASADVSGTVRIWGAHNDHV-------LKKEFRVLSGRIDDLQW  108 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~-g~~las~~~d~~i~vWd~~~~~~-------~~~~~~~~~~~v~~~~~  108 (609)
                      ..+.+|+......+..+.+|.+.|.+++|+|+ +++||||+.|++|+|||+.++..       ....+..|...|.+++|
T Consensus        54 gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf  133 (568)
T PTZ00420         54 GAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDW  133 (568)
T ss_pred             eEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEE
Confidence            46778888766666678899999999999997 89999999999999999975321       12346788899999999


Q ss_pred             CCCCCEEE-EEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCc
Q 007283          109 SPDGLRIV-ACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGH  187 (609)
Q Consensus       109 spdg~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h  187 (609)
                      +|++..++ +++.+.   .+++|+...+..+..+. |...|.+++|+|++.. +++++.|+.+++||...++....+.+|
T Consensus       134 ~P~g~~iLaSgS~Dg---tIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~l-Lat~s~D~~IrIwD~Rsg~~i~tl~gH  208 (568)
T PTZ00420        134 NPMNYYIMCSSGFDS---FVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNL-LSGTCVGKHMHIIDPRKQEIASSFHIH  208 (568)
T ss_pred             CCCCCeEEEEEeCCC---eEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCE-EEEEecCCEEEEEECCCCcEEEEEecc
Confidence            99998765 444332   57788887777666665 5678999999999985 888889999999999998888888889


Q ss_pred             ccceE-----EEEEcCCCCEEEEEeCCC----cEEEEeCCC-CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE
Q 007283          188 SNFVN-----CVRFSPDGSKFISVSSDK----KGIIYDGKT-ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA  257 (609)
Q Consensus       188 ~~~v~-----~l~~s~dg~~l~s~~~d~----~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i  257 (609)
                      .+.+.     ...|++++.+|++++.|+    .++|||.+. .+.+..+. ...+.+.+......+++.++++|+.|+.|
T Consensus       209 ~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~-ld~~~~~L~p~~D~~tg~l~lsGkGD~tI  287 (568)
T PTZ00420        209 DGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMS-IDNASAPLIPHYDESTGLIYLIGKGDGNC  287 (568)
T ss_pred             cCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEE-ecCCccceEEeeeCCCCCEEEEEECCCeE
Confidence            86543     334568999999988774    799999885 44443332 22344555555556679999999999999


Q ss_pred             EEeeccc
Q 007283          258 KVWDISE  264 (609)
Q Consensus       258 ~iwd~~~  264 (609)
                      |+|++..
T Consensus       288 r~~e~~~  294 (568)
T PTZ00420        288 RYYQHSL  294 (568)
T ss_pred             EEEEccC
Confidence            9999863

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.9e-24  Score=184.35  Aligned_cols=267  Identities=22%  Similarity=0.300  Sum_probs=197.2

Q ss_pred             cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC---ceeeeccCcccceEEEEEcC--CCCEEEEEeCCCcEEEEeC
Q 007283          143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF---KFKLSHRGHSNFVNCVRFSP--DGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~---~~~~~~~~h~~~v~~l~~s~--dg~~l~s~~~d~~i~iwd~  217 (609)
                      .|.+-|-.....-.|. +||||+.|++|+++..++.   +...++.||.++|..++|.+  .|.+||+++.||.++||..
T Consensus         9 ~H~D~IHda~lDyygk-rlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    9 QHEDMIHDAQLDYYGK-RLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhHhhhhhhcc-eeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            5665555544444444 7999999999999986543   56778999999999999987  6999999999999999987


Q ss_pred             CCCccccccCcCCCCccceEEEEECCC--CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPD--GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF  295 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (609)
                      +.+ ..........|.+.|++++|.|.  |-.|++++.||.|.+.+.+..  +..                         
T Consensus        88 ~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~--g~w-------------------------  139 (299)
T KOG1332|consen   88 ENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSS--GGW-------------------------  139 (299)
T ss_pred             CCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCC--CCc-------------------------
Confidence            777 45555556689999999999996  558999999999999987532  100                         


Q ss_pred             EEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee
Q 007283          296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA  375 (609)
Q Consensus       296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~  375 (609)
                                         ........|.-.|.++.+.+..-        +|.+.                         
T Consensus       140 -------------------~t~ki~~aH~~GvnsVswapa~~--------~g~~~-------------------------  167 (299)
T KOG1332|consen  140 -------------------TTSKIVFAHEIGVNSVSWAPASA--------PGSLV-------------------------  167 (299)
T ss_pred             -------------------cchhhhhccccccceeeecCcCC--------Ccccc-------------------------
Confidence                               00122345666666666543210        00000                         


Q ss_pred             eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEE
Q 007283          376 IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI  455 (609)
Q Consensus       376 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (609)
                                                 .                                            ....    
T Consensus       168 ---------------------------~--------------------------------------------~~~~----  172 (299)
T KOG1332|consen  168 ---------------------------D--------------------------------------------QGPA----  172 (299)
T ss_pred             ---------------------------c--------------------------------------------cCcc----
Confidence                                       0                                            0000    


Q ss_pred             cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC----CEEEEEeCCCeEEEEEccCC--ceEEee
Q 007283          456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV----SMFASGDVNREAIVWDRVSR--EVKLKN  529 (609)
Q Consensus       456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~----~~l~s~s~d~~v~iwd~~~~--~~~~~~  529 (609)
                      .+ -+.|++|+-|..|+||+...+....+.++.+|++-|..++|.|.-    .++||+|+||++.||.....  +.+.+.
T Consensus       173 ~~-~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tl  251 (299)
T KOG1332|consen  173 AK-VKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTL  251 (299)
T ss_pred             cc-cceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccc
Confidence            00 145899999999999999877655566789999999999999985    68999999999999975532  222333


Q ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          530 MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       530 ~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      +......++.+.||+.|..|+.++.|+.|.+|.-+..
T Consensus       252 l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~  288 (299)
T KOG1332|consen  252 LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVD  288 (299)
T ss_pred             cccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCC
Confidence            4445677999999999999999999999999986543

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=2.3e-24  Score=208.01  Aligned_cols=329  Identities=17%  Similarity=0.243  Sum_probs=237.6

Q ss_pred             EEEEeeCCCeEEEEecCCCeEEEEeCCCC------ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--
Q 007283          150 SCAFKPSRPFRIATCGEDFLVNFYEGPPF------KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD--  221 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~~~------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~--  221 (609)
                      .+..++.+...+.|||+|+.|+.|+...-      .+...+..|.+.|+.+....+|+.|+++|.|.+|++|+...+.  
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            34444333335999999999999975432      2356678899999999999999999999999999999988774  


Q ss_pred             cccccCcCCCCccceEEEEE-CCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEE
Q 007283          222 KIGELSPEDGHKGSVYAVSW-SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS  300 (609)
Q Consensus       222 ~~~~~~~~~~h~~~V~~l~~-spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (609)
                      +..++   ..|..-|.+++. .++..++|+||-|+.|.+||++.... ++...+.                         
T Consensus       109 c~sti---r~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~-~l~~s~n-------------------------  159 (735)
T KOG0308|consen  109 CMSTI---RTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTA-TLVASFN-------------------------  159 (735)
T ss_pred             hHhhh---hcccchheeeeecccCceeEEecCCCccEEEEEccCcch-hhhhhcc-------------------------
Confidence            34444   479999999999 88999999999999999999974211 0110000                         


Q ss_pred             cCCcEEEEeCCCCCCCceee-eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCc
Q 007283          301 LGGTISIFSANDLEKSPLQL-SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEE  379 (609)
Q Consensus       301 ~~g~i~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~  379 (609)
                         +          .....+ .|+...|++++..+ .+..+++|+..+.+++|+..++...+.                 
T Consensus       160 ---~----------~t~~sl~sG~k~siYSLA~N~-t~t~ivsGgtek~lr~wDprt~~kimk-----------------  208 (735)
T KOG0308|consen  160 ---N----------VTVNSLGSGPKDSIYSLAMNQ-TGTIIVSGGTEKDLRLWDPRTCKKIMK-----------------  208 (735)
T ss_pred             ---c----------cccccCCCCCccceeeeecCC-cceEEEecCcccceEEeccccccceee-----------------
Confidence               0          000112 27888999999864 346899999999999998654321110                 


Q ss_pred             EEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCC
Q 007283          380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDG  459 (609)
Q Consensus       380 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g  459 (609)
                                                                                     ...|...|.++-+++||
T Consensus       209 ---------------------------------------------------------------LrGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  209 ---------------------------------------------------------------LRGHTDNVRVLLVNDDG  225 (735)
T ss_pred             ---------------------------------------------------------------eeccccceEEEEEcCCC
Confidence                                                                           00122347778889999


Q ss_pred             CEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEE
Q 007283          460 SEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC  539 (609)
Q Consensus       460 ~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~  539 (609)
                      +.++++|.||+|++||+...  .+..++..|+..|+++..+|+-.++-+|+.|+.|+.=|+.+..... .+....++|..
T Consensus       226 t~~ls~sSDgtIrlWdLgqQ--rCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~t-lick~daPv~~  302 (735)
T KOG0308|consen  226 TRLLSASSDGTIRLWDLGQQ--RCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKST-LICKEDAPVLK  302 (735)
T ss_pred             CeEeecCCCceEEeeecccc--ceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhhe-EeecCCCchhh
Confidence            99999999999999999644  4467789999999999999999999999999999998887753322 23335566777


Q ss_pred             EEECCCCcEEEEEeCCCeEEEEEcCCCCCc----ce--------------------eEeccccCCeEEEEEc-CCCeEEE
Q 007283          540 LAWSPNNSMVATGSLDTCVIIYEIDKPASS----RM--------------------TIKGAHLGGVYGLAFT-DEHSVVS  594 (609)
Q Consensus       540 l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~----~~--------------------~~~~~h~~~v~~~~~s-~~~~l~s  594 (609)
                      +..+.+..-+-+++.|+.|+-|........    .+                    .+.+||  .|.-.+.. |.++++|
T Consensus       303 l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~~~~~~T~~~~~~~~~~~tp~~vi~Gg~--ai~k~~mL~dkRhVlT  380 (735)
T KOG0308|consen  303 LHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGDLDFFSTDSNNHSCDLTNTPDSVIPGGA--AIKKHAMLNDKRHVLT  380 (735)
T ss_pred             hhhccccCCceeeeccccceecCCccccccccCCCCCcccccCCCccccccCCCceeccCch--hhhhhhhhcCcceEee
Confidence            777654444567889999999975421100    00                    011111  23334444 7789999


Q ss_pred             EeCCCcEEEEEc
Q 007283          595 SGEDACVRVWRL  606 (609)
Q Consensus       595 ~s~D~~i~~W~~  606 (609)
                      =-.+|.+++||+
T Consensus       381 kDa~gnv~lwDI  392 (735)
T KOG0308|consen  381 KDAKGNVALWDI  392 (735)
T ss_pred             ecCCCCEEEEEe
Confidence            999999999998

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=5.2e-23  Score=182.18  Aligned_cols=298  Identities=21%  Similarity=0.272  Sum_probs=197.3

Q ss_pred             eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc----cccCcCCCCccceEEEEECCCCCe-EEEEeCCCcE
Q 007283          183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI----GELSPEDGHKGSVYAVSWSPDGKQ-VLTASADKSA  257 (609)
Q Consensus       183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~h~~~V~~l~~spd~~~-l~s~s~d~~i  257 (609)
                      .++||...|++++|+.||+.|++++.|+.|++|+.+....-    ...+..-+|   -+.+.|+||-+- +++.-...++
T Consensus        81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dh---pT~V~FapDc~s~vv~~~~g~~l  157 (420)
T KOG2096|consen   81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDH---PTRVVFAPDCKSVVVSVKRGNKL  157 (420)
T ss_pred             hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCC---ceEEEECCCcceEEEEEccCCEE
Confidence            47899999999999999999999999999999997653211    111112234   478999999764 4455556789


Q ss_pred             EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283          258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP  337 (609)
Q Consensus       258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  337 (609)
                      ++|.+.....+........                               |+   .   ...-.-|.-.+..+-. ..+.
T Consensus       158 ~vyk~~K~~dG~~~~~~v~-------------------------------~D---~---~~f~~kh~v~~i~iGi-A~~~  199 (420)
T KOG2096|consen  158 CVYKLVKKTDGSGSHHFVH-------------------------------ID---N---LEFERKHQVDIINIGI-AGNA  199 (420)
T ss_pred             EEEEeeecccCCCCccccc-------------------------------cc---c---cccchhcccceEEEee-cCCc
Confidence            9997642211111100000                               00   0   0001124444444333 2456


Q ss_pred             CEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEee
Q 007283          338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVA  417 (609)
Q Consensus       338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (609)
                      .+|++++.|.+|.+|++.. +.  .+                                        ++            
T Consensus       200 k~imsas~dt~i~lw~lkG-q~--L~----------------------------------------~i------------  224 (420)
T KOG2096|consen  200 KYIMSASLDTKICLWDLKG-QL--LQ----------------------------------------SI------------  224 (420)
T ss_pred             eEEEEecCCCcEEEEecCC-ce--ee----------------------------------------ee------------
Confidence            8999999999999997641 10  00                                        00            


Q ss_pred             ccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec---CCeee---eeEEEecCC
Q 007283          418 LHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR---GDTLT---EEAVLEKHR  491 (609)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~---~~~~~---~~~~~~~h~  491 (609)
                                        +.+        ...-...++||||+++|+++..-.+++|++-   .+.+.   ....+++|+
T Consensus       225 ------------------dtn--------q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~  278 (420)
T KOG2096|consen  225 ------------------DTN--------QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ  278 (420)
T ss_pred             ------------------ccc--------cccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence                              000        0112446889999999999999999999973   22221   124578999


Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE------Eeee--cCCC--CceEEEEECCCCcEEEEEeCCCeEEEE
Q 007283          492 GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK------LKNM--LYHT--ARINCLAWSPNNSMVATGSLDTCVIIY  561 (609)
Q Consensus       492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~------~~~~--~~h~--~~i~~l~~s~d~~~l~s~s~D~~v~vw  561 (609)
                      ..|...+|||+.+.+++.|.||+.++||..-++..      ++..  ..|.  +.-..|+.||+|+.||.+ ...++++|
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~  357 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVF  357 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEE
Confidence            99999999999999999999999999996432211      1111  1121  233489999999988755 45578999


Q ss_pred             EcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          562 EIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       562 ~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                      ...++. ........|...|.+++|+ ++++++|+| |+.+++..
T Consensus       358 ~se~g~-~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  358 ASEDGK-DYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             EcccCc-cchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence            876643 3345567899999999999 788888887 55666543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=7.6e-22  Score=175.52  Aligned_cols=284  Identities=18%  Similarity=0.236  Sum_probs=217.3

Q ss_pred             CcCceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC--CCcEEEEcCCCCce
Q 007283           15 ERGRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV--SGTVRIWGAHNDHV   91 (609)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~--d~~i~vWd~~~~~~   91 (609)
                      ..++...+.++++|+.++.+ .+..+.|||..+++++..+..++..+..++|....+-+..++.  |.+||.=++.+.+.
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            47788899999999998775 5679999999999999999888899999999776665555544  89999999999886


Q ss_pred             eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                      + +.|.+|...|..++.+|-+..+++.+-++   .+|+|+....++.+.+.-...+  .+||+|+|- ++|++.....|+
T Consensus        93 l-RYF~GH~~~V~sL~~sP~~d~FlS~S~D~---tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GL-ifA~~~~~~~Ik  165 (311)
T KOG1446|consen   93 L-RYFPGHKKRVNSLSVSPKDDTFLSSSLDK---TVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGL-IFALANGSELIK  165 (311)
T ss_pred             E-EEcCCCCceEEEEEecCCCCeEEecccCC---eEEeeEecCCCCceEEecCCCc--ceeECCCCc-EEEEecCCCeEE
Confidence            5 46999999999999999989999887654   4788888777777766544443  479999997 477776666999


Q ss_pred             EEeCCCC-----ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC
Q 007283          172 FYEGPPF-----KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK  246 (609)
Q Consensus       172 ~~~~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~  246 (609)
                      +||.+..     .......+.....+.+.|||||+.|+.++..+.+.+.|..+|..+.++.........-.+.+|+||++
T Consensus       166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~  245 (311)
T KOG1446|consen  166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSK  245 (311)
T ss_pred             EEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCc
Confidence            9986543     22111224556789999999999999999999999999999998777753322222226889999999


Q ss_pred             eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCC
Q 007283          247 QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND  312 (609)
Q Consensus       247 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  312 (609)
                      ++++|+.||+|.+|+++   .+.....+.....    ....+.-|++.+...++.+..+..|-...
T Consensus       246 Fvl~gs~dg~i~vw~~~---tg~~v~~~~~~~~----~~~~~~~fnP~~~mf~sa~s~l~fw~p~~  304 (311)
T KOG1446|consen  246 FVLSGSDDGTIHVWNLE---TGKKVAVLRGPNG----GPVSCVRFNPRYAMFVSASSNLVFWLPDE  304 (311)
T ss_pred             EEEEecCCCcEEEEEcC---CCcEeeEecCCCC----CCccccccCCceeeeeecCceEEEEeccc
Confidence            99999999999999996   3444444432211    11122337788877888888888887653

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.7e-23  Score=180.30  Aligned_cols=235  Identities=20%  Similarity=0.295  Sum_probs=188.9

Q ss_pred             ccCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCcccc--ccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCC
Q 007283           13 STERGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVS--IYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHN   88 (609)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~--~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~   88 (609)
                      ..+-+..-.+++.-+|..|+... +..+.+|.+...+...  .+.+|.+.|-.++++| +..++|+++.|++||+||...
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~   96 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRS   96 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEecc
Confidence            33444445788999999999875 6899999997764432  3568999999999987 567899999999999999988


Q ss_pred             CceeeEEEeecccceeEEEECCCCCEEEEEECCCC--------------------------------------cceEEEE
Q 007283           89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKG--------------------------------------KSLVRAF  130 (609)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~--------------------------------------~~~~~~~  130 (609)
                      ++++...  ..++.--.+.|+|||+++++.+.+..                                      ...+.+.
T Consensus        97 ~k~~~~i--~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~IL  174 (313)
T KOG1407|consen   97 GKCTARI--ETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEIL  174 (313)
T ss_pred             CcEEEEe--eccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEE
Confidence            7754322  23344456799999999888763211                                      1112223


Q ss_pred             EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283          131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                      .|..=+++.+++.|...-.++.|+|+|.+ ||+|+.|-.+.+||....-+.+.+..+.-+|..+.|+.||++||+|+.|.
T Consensus       175 sypsLkpv~si~AH~snCicI~f~p~Gry-fA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh  253 (313)
T KOG1407|consen  175 SYPSLKPVQSIKAHPSNCICIEFDPDGRY-FATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH  253 (313)
T ss_pred             eccccccccccccCCcceEEEEECCCCce-EeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc
Confidence            33333445567789999999999999986 99999999999999998888899999999999999999999999999999


Q ss_pred             cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283          211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD  254 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d  254 (609)
                      .|-|=++++|..+..+    .+.++-..++|+|...+||-++.|
T Consensus       254 ~IDIA~vetGd~~~eI----~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  254 FIDIAEVETGDRVWEI----PCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eEEeEecccCCeEEEe----eccCCceeEEecCCCceeeEEecC
Confidence            9999999999998877    377889999999999999988876

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=6.5e-24  Score=181.16  Aligned_cols=253  Identities=23%  Similarity=0.345  Sum_probs=190.8

Q ss_pred             CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      ..|...|..+...--|++|+|+|.|++|+|+.++....                                          
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------------------------------------------   45 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------------------------------------------   45 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------------------------------------------
Confidence            46888888888877899999999999999999863211                                          


Q ss_pred             CCCCCCCceeeeCCCCCeEEEEEe-cCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccce
Q 007283          310 ANDLEKSPLQLSGHMKNVTALTVL-NIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNK  388 (609)
Q Consensus       310 ~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  388 (609)
                          .....+|.||.++|..+++. +.-+.+|++|+.||.|.+|.-..+.-.+.                          
T Consensus        46 ----s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~--------------------------   95 (299)
T KOG1332|consen   46 ----SKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKA--------------------------   95 (299)
T ss_pred             ----ceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhh--------------------------
Confidence                01224678999999999987 44568999999999999995432210000                          


Q ss_pred             EEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC--CCEEEEEe
Q 007283          389 IWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD--GSEAIIGS  466 (609)
Q Consensus       389 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~~l~~gs  466 (609)
                                      .                                    ....+...++++++.|.  |-.||+++
T Consensus        96 ----------------~------------------------------------e~~~h~~SVNsV~wapheygl~Lacas  123 (299)
T KOG1332|consen   96 ----------------Y------------------------------------EHAAHSASVNSVAWAPHEYGLLLACAS  123 (299)
T ss_pred             ----------------h------------------------------------hhhhhcccceeecccccccceEEEEee
Confidence                            0                                    00012234677777775  45789999


Q ss_pred             CCCcEEEEEecCC-eeeeeEEEecCCCceEEEEECCC---C-----------CEEEEEeCCCeEEEEEccCCceEEee-e
Q 007283          467 QDGKLRVYSIRGD-TLTEEAVLEKHRGAVSVIRYSPD---V-----------SMFASGDVNREAIVWDRVSREVKLKN-M  530 (609)
Q Consensus       467 ~dg~i~iw~~~~~-~~~~~~~~~~h~~~i~~v~~s~~---~-----------~~l~s~s~d~~v~iwd~~~~~~~~~~-~  530 (609)
                      .||.|.+++.+.. ..........|.-.|++++|.|-   |           +.|+||+.|+.|+||+..+.+..+.. +
T Consensus       124 SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l  203 (299)
T KOG1332|consen  124 SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTL  203 (299)
T ss_pred             CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhh
Confidence            9999999998765 33334566789999999999987   5           56999999999999998775443332 6


Q ss_pred             cCCCCceEEEEECCCC----cEEEEEeCCCeEEEEEcCCCCCc-ceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEE
Q 007283          531 LYHTARINCLAWSPNN----SMVATGSLDTCVIIYEIDKPASS-RMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW  604 (609)
Q Consensus       531 ~~h~~~i~~l~~s~d~----~~l~s~s~D~~v~vw~~~~~~~~-~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W  604 (609)
                      ..|.+.|+.++|.|.-    .+||++|.||+|.||..+.+..+ ...++..-...+|.+.|| .++.|+-++.|..+.+|
T Consensus       204 ~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlw  283 (299)
T KOG1332|consen  204 EGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLW  283 (299)
T ss_pred             hhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEE
Confidence            7899999999999974    57999999999999987643211 122333345679999999 78889889999999999


Q ss_pred             Ec
Q 007283          605 RL  606 (609)
Q Consensus       605 ~~  606 (609)
                      .=
T Consensus       284 ke  285 (299)
T KOG1332|consen  284 KE  285 (299)
T ss_pred             Ee
Confidence            64

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=1.2e-22  Score=179.97  Aligned_cols=265  Identities=22%  Similarity=0.311  Sum_probs=194.8

Q ss_pred             eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC--eEEEEeCCCcEE
Q 007283          181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK--QVLTASADKSAK  258 (609)
Q Consensus       181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~--~l~s~s~d~~i~  258 (609)
                      .+.+..|...|++++.  +|.++|+|+.|-+|.|||.++...+..+.   .|.+.|+++.|.|...  .|++|+.||.|.
T Consensus        36 lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll---~HagsitaL~F~~~~S~shLlS~sdDG~i~  110 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILL---SHAGSITALKFYPPLSKSHLLSGSDDGHII  110 (362)
T ss_pred             cccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhccee---ccccceEEEEecCCcchhheeeecCCCcEE
Confidence            4557789999999998  67899999999999999999888777764   5899999999999875  899999999999


Q ss_pred             EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283          259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK  338 (609)
Q Consensus       259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  338 (609)
                      +|+...     .                                            .....+++|...|+.++.++. ++
T Consensus       111 iw~~~~-----W--------------------------------------------~~~~slK~H~~~Vt~lsiHPS-~K  140 (362)
T KOG0294|consen  111 IWRVGS-----W--------------------------------------------ELLKSLKAHKGQVTDLSIHPS-GK  140 (362)
T ss_pred             EEEcCC-----e--------------------------------------------EEeeeecccccccceeEecCC-Cc
Confidence            999741     0                                            012346779999999999864 57


Q ss_pred             EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283          339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL  418 (609)
Q Consensus       339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (609)
                      +.++-+.|+.++.|++..+.....                                                        
T Consensus       141 LALsVg~D~~lr~WNLV~Gr~a~v--------------------------------------------------------  164 (362)
T KOG0294|consen  141 LALSVGGDQVLRTWNLVRGRVAFV--------------------------------------------------------  164 (362)
T ss_pred             eEEEEcCCceeeeehhhcCcccee--------------------------------------------------------
Confidence            999999999999998754321110                                                        


Q ss_pred             cCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEE
Q 007283          419 HYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIR  498 (609)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~  498 (609)
                                               ++.+..-+.+.|+|.|.+++.+..++ |-+|.+....+.....   ....+.|+.
T Consensus       165 -------------------------~~L~~~at~v~w~~~Gd~F~v~~~~~-i~i~q~d~A~v~~~i~---~~~r~l~~~  215 (362)
T KOG0294|consen  165 -------------------------LNLKNKATLVSWSPQGDHFVVSGRNK-IDIYQLDNASVFREIE---NPKRILCAT  215 (362)
T ss_pred             -------------------------eccCCcceeeEEcCCCCEEEEEeccE-EEEEecccHhHhhhhh---ccccceeee
Confidence                                     00111123367889999998887755 7888876544322211   124466766


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEE--CCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc
Q 007283          499 YSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW--SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA  576 (609)
Q Consensus       499 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~--s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~  576 (609)
                      |- ++..+++|..|+.+++||... ...+..+.+|..+|..+.+  .|++.+|+|+|.||.|+|||++.....+...+.-
T Consensus       216 ~l-~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e  293 (362)
T KOG0294|consen  216 FL-DGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAE  293 (362)
T ss_pred             ec-CCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEE
Confidence            63 677888999999999999765 3345567889999999984  4678999999999999999997432111111111


Q ss_pred             c--cCCeEEEEEc
Q 007283          577 H--LGGVYGLAFT  587 (609)
Q Consensus       577 h--~~~v~~~~~s  587 (609)
                      |  ..+++|++..
T Consensus       294 ~n~~~RltCl~~~  306 (362)
T KOG0294|consen  294 LNTNVRLTCLRVK  306 (362)
T ss_pred             eecCCccceeeeh
Confidence            1  3466777754

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.92  E-value=9.7e-23  Score=180.21  Aligned_cols=271  Identities=19%  Similarity=0.310  Sum_probs=202.1

Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCC
Q 007283          188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNH  267 (609)
Q Consensus       188 ~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~  267 (609)
                      ...|+.+.|+|.++.|+.++.||.+++||+...+....+    .|..++.+++|.++ ..+++|+.||.|+.+|+...+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~----~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~   87 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF----KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNE   87 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe----ecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcc
Confidence            567999999999999999999999999998887554444    58899999999874 5688999999999999863210


Q ss_pred             CceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCC
Q 007283          268 GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDG  347 (609)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg  347 (609)
                                                                        .++..|...|.++.+... ...+++||+|+
T Consensus        88 --------------------------------------------------~~igth~~~i~ci~~~~~-~~~vIsgsWD~  116 (323)
T KOG1036|consen   88 --------------------------------------------------DQIGTHDEGIRCIEYSYE-VGCVISGSWDK  116 (323)
T ss_pred             --------------------------------------------------eeeccCCCceEEEEeecc-CCeEEEcccCc
Confidence                                                              123458888888887743 35899999999


Q ss_pred             cEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEE
Q 007283          348 LIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVS  427 (609)
Q Consensus       348 ~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (609)
                      +|++||......... ......+.++...++.++.+..+.++..|+++....-+                          
T Consensus       117 ~ik~wD~R~~~~~~~-~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~--------------------------  169 (323)
T KOG1036|consen  117 TIKFWDPRNKVVVGT-FDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPF--------------------------  169 (323)
T ss_pred             cEEEEeccccccccc-cccCceEEEEeccCCEEEEeecCceEEEEEcccccchh--------------------------
Confidence            999998764221111 01223566777778888888889898888876543110                          


Q ss_pred             ecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCC--eeeeeEEEecCCC---------ceEE
Q 007283          428 TDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD--TLTEEAVLEKHRG---------AVSV  496 (609)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~--~~~~~~~~~~h~~---------~i~~  496 (609)
                                  ..+.-..+.++.++++.|++.-+|++|-||+|.+=.++..  ....+..++.|..         +|++
T Consensus       170 ------------q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNa  237 (323)
T KOG1036|consen  170 ------------QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNA  237 (323)
T ss_pred             ------------hhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEece
Confidence                        0011122356889999999999999999999866444322  2223455666743         7999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeC
Q 007283          497 IRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSL  554 (609)
Q Consensus       497 v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~  554 (609)
                      |+|+|-...||||+.||.|.+||..+++. ++++..-...|-.++|+.||..||.|+.
T Consensus       238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-l~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  238 IAFHPIHGTFATGGSDGIVNIWDLFNRKR-LKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEeccccceEEecCCCceEEEccCcchhh-hhhccCCCCceEEEEeccCCCeEEEEec
Confidence            99999999999999999999999876543 4445444567999999999999999864

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.9e-23  Score=194.11  Aligned_cols=265  Identities=20%  Similarity=0.330  Sum_probs=195.5

Q ss_pred             CCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          231 GHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       231 ~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      .|.+.|+.+..-|... .+++.+..+.+.|||....... ...      .                              
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~-~~~------~------------------------------  164 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSK-PKA------S------------------------------  164 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCc-ccc------c------------------------------
Confidence            4889999999999776 4556677899999997531110 000      0                              


Q ss_pred             CCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceE
Q 007283          310 ANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKI  389 (609)
Q Consensus       310 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  389 (609)
                        ..-.+-..+.||.+.-.++.|+......+++++.|++|.+|+++.....      ...+.                  
T Consensus       165 --~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~------~~~~~------------------  218 (422)
T KOG0264|consen  165 --GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKE------DKVVD------------------  218 (422)
T ss_pred             --ccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccC------Ccccc------------------
Confidence              0011224577888877888888777778999999999999987532110      00000                  


Q ss_pred             EEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCC
Q 007283          390 WRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQD  468 (609)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~d  468 (609)
                                                      .                 ....-.+...|..++++| +..++++.+.|
T Consensus       219 --------------------------------p-----------------~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd  249 (422)
T KOG0264|consen  219 --------------------------------P-----------------KTIFSGHEDVVEDVAWHPLHEDLFGSVGDD  249 (422)
T ss_pred             --------------------------------c-----------------eEEeecCCcceehhhccccchhhheeecCC
Confidence                                            0                 000001223466777777 45678999999


Q ss_pred             CcEEEEEecCCeeeeeEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCC-
Q 007283          469 GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-VSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN-  546 (609)
Q Consensus       469 g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~-  546 (609)
                      +.+.|||++.+........++|.+.|+|++|+|- +..||+||.|++|.+||+++-..++-.+.+|...|.+|.|||.. 
T Consensus       250 ~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e  329 (422)
T KOG0264|consen  250 GKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE  329 (422)
T ss_pred             CeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC
Confidence            9999999986433334567899999999999986 56789999999999999988777666788999999999999975 


Q ss_pred             cEEEEEeCCCeEEEEEcCCCCC------------cceeEeccccCCeEEEEEcCC--CeEEEEeCCCcEEEEEcc
Q 007283          547 SMVATGSLDTCVIIYEIDKPAS------------SRMTIKGAHLGGVYGLAFTDE--HSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       547 ~~l~s~s~D~~v~vw~~~~~~~------------~~~~~~~~h~~~v~~~~~s~~--~~l~s~s~D~~i~~W~~~  607 (609)
                      ..||+++.|+.+.|||+.+-+.            +++.+.+||...|..+.|.+.  -.|+|++.|+.+.||+..
T Consensus       330 tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  330 TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence            6899999999999999864221            234678899999999999843  357899999999999874

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.9e-23  Score=181.78  Aligned_cols=246  Identities=17%  Similarity=0.288  Sum_probs=187.9

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      ...+..|.+.++++|.+  |.|+|||+.|-+|+|||......+                                     
T Consensus        36 lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~ql-------------------------------------   76 (362)
T KOG0294|consen   36 LFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQL-------------------------------------   76 (362)
T ss_pred             cccccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhh-------------------------------------
Confidence            34567899999999985  899999999999999998764322                                     


Q ss_pred             EEcCCCCeeEEEecCCccEEEEEEeeCCC-eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283          130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRP-FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                               +.+-.|.+.|++|.|.|.-. .-+.+|+.||.|.+|+..++++...+++|..+|+.++.+|.|++-++.+.
T Consensus        77 ---------g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~  147 (362)
T KOG0294|consen   77 ---------GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGG  147 (362)
T ss_pred             ---------cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcC
Confidence                     12334566666666655432 13889999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      |+.++.|+.-+++....++.  .+.  -+.+.|+|.|.+++.++.+ .|-+|.+..   -.+...+...     ......
T Consensus       148 D~~lr~WNLV~Gr~a~v~~L--~~~--at~v~w~~~Gd~F~v~~~~-~i~i~q~d~---A~v~~~i~~~-----~r~l~~  214 (362)
T KOG0294|consen  148 DQVLRTWNLVRGRVAFVLNL--KNK--ATLVSWSPQGDHFVVSGRN-KIDIYQLDN---ASVFREIENP-----KRILCA  214 (362)
T ss_pred             CceeeeehhhcCccceeecc--CCc--ceeeEEcCCCCEEEEEecc-EEEEEeccc---HhHhhhhhcc-----ccceee
Confidence            99999999988886655532  233  3349999999999888765 688998753   1222222111     011122


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEe-cCCCCEEEEEecCCcEEEEecCcc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVL-NIDPKVILSSSYDGLIVKWIQGIG  357 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~-~~~~~~~~t~s~dg~i~~W~~~~~  357 (609)
                      ..-++..++++..++.|.+|+.++ ..+...+.+|...|..+.+. ++...+++|+|.||.|++|+.+..
T Consensus       215 ~~l~~~~L~vG~d~~~i~~~D~ds-~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  215 TFLDGSELLVGGDNEWISLKDTDS-DTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             eecCCceEEEecCCceEEEeccCC-CccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            222466899999999999999876 45567789999999999855 555679999999999999987654

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=3.2e-23  Score=192.64  Aligned_cols=261  Identities=22%  Similarity=0.352  Sum_probs=198.2

Q ss_pred             cCCCCcEEEEECCCC-CEEEEEeCCCcEEEEcCCCCceee---------EEEeecccceeEEEECCCCC-EEEEEECCCC
Q 007283           55 EHAYPATVARFSPNG-EWIASADVSGTVRIWGAHNDHVLK---------KEFRVLSGRIDDLQWSPDGL-RIVACGDGKG  123 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g-~~las~~~d~~i~vWd~~~~~~~~---------~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~  123 (609)
                      .|.+.|+.++.-|+. .+||+++..+.|.|||.....-..         ..+.+|.+.-..++|++... +|++.+++. 
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~-  200 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH-  200 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC-
Confidence            588899999988865 566788889999999987432111         25778888788899999643 666665543 


Q ss_pred             cceEEEEEcCCCC-------eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC--CCceeeeccCcccceEEE
Q 007283          124 KSLVRAFMWDSGT-------NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP--PFKFKLSHRGHSNFVNCV  194 (609)
Q Consensus       124 ~~~~~~~~~~~~~-------~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~--~~~~~~~~~~h~~~v~~l  194 (609)
                        .+++|+.....       ....+.+|...|..++|+|.....|++++.|+.+.+||.+  +.+......+|.+.|+|+
T Consensus       201 --~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~  278 (422)
T KOG0264|consen  201 --TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCV  278 (422)
T ss_pred             --cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEE
Confidence              46666665321       2456889999999999999988899999999999999988  555666678899999999


Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEE
Q 007283          195 RFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKK  272 (609)
Q Consensus       195 ~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~  272 (609)
                      +|+|-+. .|||||.|+++.+||.+.-+.  .+....+|...|.++.|||.. ..|++++.|+.+.+||+..-  +   .
T Consensus       279 ~fnp~~~~ilAT~S~D~tV~LwDlRnL~~--~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i--g---~  351 (422)
T KOG0264|consen  279 AFNPFNEFILATGSADKTVALWDLRNLNK--PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI--G---E  351 (422)
T ss_pred             EeCCCCCceEEeccCCCcEEEeechhccc--CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc--c---c
Confidence            9999755 789999999999999887553  333346899999999999975 57889999999999998621  1   0


Q ss_pred             EeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEE
Q 007283          273 TLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW  352 (609)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W  352 (609)
                      .......                     .         +..........||+..|....+++..+..++|.+.|+.+.+|
T Consensus       352 eq~~eda---------------------~---------dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW  401 (422)
T KOG0264|consen  352 EQSPEDA---------------------E---------DGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIW  401 (422)
T ss_pred             ccChhhh---------------------c---------cCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEe
Confidence            0000000                     0         000111234568999999999998889999999999999999


Q ss_pred             ecC
Q 007283          353 IQG  355 (609)
Q Consensus       353 ~~~  355 (609)
                      ...
T Consensus       402 ~~s  404 (422)
T KOG0264|consen  402 QMA  404 (422)
T ss_pred             ecc
Confidence            653

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3.1e-22  Score=186.40  Aligned_cols=292  Identities=20%  Similarity=0.251  Sum_probs=205.4

Q ss_pred             EEEEEcCCCCeeEEEecC-CccEEEE-EEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEE
Q 007283          127 VRAFMWDSGTNVGEFDGH-SRRVLSC-AFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI  204 (609)
Q Consensus       127 ~~~~~~~~~~~~~~~~~h-~~~v~~~-~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  204 (609)
                      ..+|+..++....++++- ...-.++ +..+  .+.+++--.-..+.+|...+.......---.++|.|++-+|+|.+|+
T Consensus        20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~l~~--~yllsaq~~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~G~~l~   97 (476)
T KOG0646|consen   20 CIVWDLRTGTSLLQYKGSYLAQAASLTALNN--EYLLSAQLKRPLLHVWEILKKDQVVQYIVLPGPVHALASSNLGYFLL   97 (476)
T ss_pred             eeEEecCCCceeEEecCcccccchhhhhhch--hheeeecccCccccccccCchhhhhhhcccccceeeeecCCCceEEE
Confidence            456676777776666654 1111111 1112  23344334445688888654433322222346799999999999988


Q ss_pred             EEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283          205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD  284 (609)
Q Consensus       205 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  284 (609)
                      .|+..+.+++|.+.+|..+..+   .+|-..|+++.|+-||.+|+|||.||.|.+|++..     +.             
T Consensus        98 ag~i~g~lYlWelssG~LL~v~---~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~-----lv-------------  156 (476)
T KOG0646|consen   98 AGTISGNLYLWELSSGILLNVL---SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTD-----LV-------------  156 (476)
T ss_pred             eecccCcEEEEEeccccHHHHH---HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEe-----ec-------------
Confidence            8889999999999999988777   37999999999999999999999999999998741     00             


Q ss_pred             eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC-CCCEEEEEecCCcEEEEecCccccceec
Q 007283          285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI-DPKVILSSSYDGLIVKWIQGIGYGGKLQ  363 (609)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~t~s~dg~i~~W~~~~~~~~~~~  363 (609)
                                   .+..+.         ...+...+.+|.-.|+.+..... .+..++|+|.|.++++|++..+.     
T Consensus       157 -------------~a~~~~---------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~-----  209 (476)
T KOG0646|consen  157 -------------SADNDH---------SVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGV-----  209 (476)
T ss_pred             -------------ccccCC---------CccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccce-----
Confidence                         000010         11233456678888988877643 34589999999999999764320     


Q ss_pred             cccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEE
Q 007283          364 RKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVST  443 (609)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (609)
                                                                                                  ++..
T Consensus       210 ----------------------------------------------------------------------------LLlt  213 (476)
T KOG0646|consen  210 ----------------------------------------------------------------------------LLLT  213 (476)
T ss_pred             ----------------------------------------------------------------------------eeEE
Confidence                                                                                        1111


Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe--------------eeeeEEEecCCC--ceEEEEECCCCCEEE
Q 007283          444 INLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT--------------LTEEAVLEKHRG--AVSVIRYSPDVSMFA  507 (609)
Q Consensus       444 ~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~--------------~~~~~~~~~h~~--~i~~v~~s~~~~~l~  507 (609)
                      +....++.++++.|-++.+.+|+.+|.|.+.++..-.              ......+.+|.+  .|+|+++|-||.+|+
T Consensus       214 i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  214 ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence            1222457889999999999999999999998874321              123456788988  999999999999999


Q ss_pred             EEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCC
Q 007283          508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN  545 (609)
Q Consensus       508 s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d  545 (609)
                      +|+.||.+.+||+.+.+. ++.+..-.++|+-+.+.|-
T Consensus       294 SGd~dg~VcvWdi~S~Q~-iRtl~~~kgpVtnL~i~~~  330 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQC-IRTLQTSKGPVTNLQINPL  330 (476)
T ss_pred             eeCCCCCEEEEecchHHH-HHHHhhhccccceeEeecc
Confidence            999999999999876543 3333334567888888553

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=7.4e-22  Score=173.88  Aligned_cols=279  Identities=17%  Similarity=0.203  Sum_probs=193.7

Q ss_pred             cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-Ccee-eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007283          143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFK-LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA  220 (609)
Q Consensus       143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~  220 (609)
                      ...+.|.+++|+|.....++.++.|+++++|+... +... .....|.++|.+++|+.||..+++|+.|+.+++||+.++
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~  104 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG  104 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC
Confidence            34567999999997666788999999999999765 2222 335678999999999999999999999999999999998


Q ss_pred             ccccccCcCCCCccceEEEEECCCCC--eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283          221 DKIGELSPEDGHKGSVYAVSWSPDGK--QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI  298 (609)
Q Consensus       221 ~~~~~~~~~~~h~~~V~~l~~spd~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (609)
                      +.. ++   ..|.++|..+.|-+-..  .|++||.|.+|++||++.   ...+.++...+      .+.+..-...++++
T Consensus       105 Q~~-~v---~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~---~~pv~t~~LPe------RvYa~Dv~~pm~vV  171 (347)
T KOG0647|consen  105 QVS-QV---AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRS---SNPVATLQLPE------RVYAADVLYPMAVV  171 (347)
T ss_pred             Cee-ee---eecccceeEEEEecCCCcceeEecccccceeecccCC---CCeeeeeeccc------eeeehhccCceeEE
Confidence            543 22   36999999999987654  799999999999999873   23333332221      22222233568888


Q ss_pred             EEcCCcEEEEeCCCCCCCceeeeCCC----CCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283          299 VSLGGTISIFSANDLEKSPLQLSGHM----KNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA  374 (609)
Q Consensus       299 ~~~~g~i~~~~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~  374 (609)
                      +..+..|.+|++....   .+++.+.    -.+.+++.+... ...+-|+-.|.+-+-..+....          .    
T Consensus       172 ata~r~i~vynL~n~~---te~k~~~SpLk~Q~R~va~f~d~-~~~alGsiEGrv~iq~id~~~~----------~----  233 (347)
T KOG0647|consen  172 ATAERHIAVYNLENPP---TEFKRIESPLKWQTRCVACFQDK-DGFALGSIEGRVAIQYIDDPNP----------K----  233 (347)
T ss_pred             EecCCcEEEEEcCCCc---chhhhhcCcccceeeEEEEEecC-CceEeeeecceEEEEecCCCCc----------c----
Confidence            9999999999985322   2222222    245666665332 3447777777776654432110          0    


Q ss_pred             eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE
Q 007283          375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA  454 (609)
Q Consensus       375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (609)
                                                           ..+.+.-|+..       ..     ...      .-+.|+.++
T Consensus       234 -------------------------------------~nFtFkCHR~~-------~~-----~~~------~VYaVNsi~  258 (347)
T KOG0647|consen  234 -------------------------------------DNFTFKCHRST-------NS-----VND------DVYAVNSIA  258 (347)
T ss_pred             -------------------------------------CceeEEEeccC-------CC-----CCC------ceEEecceE
Confidence                                                 00000000000       00     000      013478899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEE
Q 007283          455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG  509 (609)
Q Consensus       455 ~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~  509 (609)
                      |+|....|++.+.||++-+||-+....  .+..+.|..+|+|.+|+.+|.++|-+
T Consensus       259 FhP~hgtlvTaGsDGtf~FWDkdar~k--Lk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  259 FHPVHGTLVTAGSDGTFSFWDKDARTK--LKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             eecccceEEEecCCceEEEecchhhhh--hhccCcCCCccceeEecCCCCEEEEE
Confidence            999999999999999999999765432  35567899999999999999999876

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=2.2e-22  Score=192.47  Aligned_cols=312  Identities=23%  Similarity=0.378  Sum_probs=218.0

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE-EEEEECCCCcceEEEE
Q 007283           52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR-IVACGDGKGKSLVRAF  130 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~~~~  130 (609)
                      .|.||++-|.++...|.|.+||+|+.||+||||.+.+++++.+ + ...+.|.+++|+|.+.. ++++.-+..     +.
T Consensus       395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~-~-~~d~~I~~vaw~P~~~~~vLAvA~~~~-----~~  467 (733)
T KOG0650|consen  395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRT-V-QFDSEIRSVAWNPLSDLCVLAVAVGEC-----VL  467 (733)
T ss_pred             eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEE-E-eecceeEEEEecCCCCceeEEEEecCc-----eE
Confidence            4789999999999999999999999999999999999886653 2 34568999999998652 333322221     12


Q ss_pred             EcCC--CCeeEEEecCCccEEEEEEeeCCCeEEEEe----cCCCeEEEEeCCC----CceeeeccCcccceEEEEEcCCC
Q 007283          131 MWDS--GTNVGEFDGHSRRVLSCAFKPSRPFRIATC----GEDFLVNFYEGPP----FKFKLSHRGHSNFVNCVRFSPDG  200 (609)
Q Consensus       131 ~~~~--~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~----~~d~~i~~~~~~~----~~~~~~~~~h~~~v~~l~~s~dg  200 (609)
                      ..+.  +..+..  +           +... .|+++    ..+..+..|....    .+.+...-.|...|..+.|+..|
T Consensus       468 ivnp~~G~~~e~--~-----------~t~e-ll~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkG  533 (733)
T KOG0650|consen  468 IVNPIFGDRLEV--G-----------PTKE-LLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKG  533 (733)
T ss_pred             EeCccccchhhh--c-----------chhh-hhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCC
Confidence            2221  110000  0           0111 12222    1233455664321    11123334578889999999999


Q ss_pred             CEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccC
Q 007283          201 SKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPS  277 (609)
Q Consensus       201 ~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  277 (609)
                      .+|++...+   ..|.|+++........+   .-..+.|.++.|+|...+|+.++ ...||+||+..   +.+.+     
T Consensus       534 DYlatV~~~~~~~~VliHQLSK~~sQ~PF---~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k---qelvK-----  601 (733)
T KOG0650|consen  534 DYLATVMPDSGNKSVLIHQLSKRKSQSPF---RKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK---QELVK-----  601 (733)
T ss_pred             ceEEEeccCCCcceEEEEecccccccCch---hhcCCceeEEEecCCCceEEEEe-ccceEEEehhH---HHHHH-----
Confidence            999998764   56888887665544333   23457899999999999988886 46899999751   10000     


Q ss_pred             CCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283          278 GSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG  357 (609)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~  357 (609)
                                                                                   .+.+++             
T Consensus       602 -------------------------------------------------------------kL~tg~-------------  607 (733)
T KOG0650|consen  602 -------------------------------------------------------------KLLTGS-------------  607 (733)
T ss_pred             -------------------------------------------------------------HHhcCC-------------
Confidence                                                                         000000             


Q ss_pred             ccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeC
Q 007283          358 YGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRG  437 (609)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  437 (609)
                                                                                                      
T Consensus       608 --------------------------------------------------------------------------------  607 (733)
T KOG0650|consen  608 --------------------------------------------------------------------------------  607 (733)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEE
Q 007283          438 AEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV  517 (609)
Q Consensus       438 ~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~i  517 (609)
                                ..+..++++|.|..++.|+.|+.+-.||++-... ..+.+.-|...+++|+|++...+++||+.|+++.+
T Consensus       608 ----------kwiS~msihp~GDnli~gs~d~k~~WfDldlssk-Pyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~V  676 (733)
T KOG0650|consen  608 ----------KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK-PYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIV  676 (733)
T ss_pred             ----------eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc-hhHHhhhhhhhhhhhhhccccceeeeecCCCcEEE
Confidence                      1255678899999999999999999999864422 24567789999999999999999999999999998


Q ss_pred             EE------c-cCC-ceEEeeecCCCCc----eEEEEECCCCcEEEEEeCCCeEEEE
Q 007283          518 WD------R-VSR-EVKLKNMLYHTAR----INCLAWSPNNSMVATGSLDTCVIIY  561 (609)
Q Consensus       518 wd------~-~~~-~~~~~~~~~h~~~----i~~l~~s~d~~~l~s~s~D~~v~vw  561 (609)
                      +-      + ++. -..++.+.+|...    |..+.|+|..-||++++.||+|++|
T Consensus       677 fhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  677 FHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             EeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            74      1 111 2245667777655    9999999999999999999999998

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=1.6e-21  Score=181.31  Aligned_cols=286  Identities=19%  Similarity=0.283  Sum_probs=206.7

Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe
Q 007283           58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN  137 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~  137 (609)
                      ++|+++.|+|.-.+|++++.|+++||+.++.+.-.         .+..                                
T Consensus       214 ~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~---------~lqS--------------------------------  252 (514)
T KOG2055|consen  214 GGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNP---------KLQS--------------------------------  252 (514)
T ss_pred             CCceEEEecCCCceEEEecCCCcEEEEEecCccCh---------hhee--------------------------------
Confidence            57999999999999999999999999988653200         0111                                


Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee--ccCcc-cceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS--HRGHS-NFVNCVRFSPDGSKFISVSSDKKGII  214 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~--~~~h~-~~v~~l~~s~dg~~l~s~~~d~~i~i  214 (609)
                         +.-...+|.++.|+|+|..+++++|.-..+..||.++.+....  ..|+. ..+.....+|++++|+.++..|.|.+
T Consensus       253 ---~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~l  329 (514)
T KOG2055|consen  253 ---IHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHL  329 (514)
T ss_pred             ---eeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEe
Confidence               1111235677788888876788888888888999877665432  34544 45677889999999999999999999


Q ss_pred             EeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC
Q 007283          215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND  294 (609)
Q Consensus       215 wd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (609)
                      ....+++.+..++    -.+.|..++|+.|++.|+.++.+|.|.+||++.   .....                      
T Consensus       330 LhakT~eli~s~K----ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~---~~~~~----------------------  380 (514)
T KOG2055|consen  330 LHAKTKELITSFK----IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQ---NSCLH----------------------  380 (514)
T ss_pred             ehhhhhhhhheee----eccEEeeEEEecCCcEEEEEcCCceEEEEecCC---cceEE----------------------
Confidence            9999999988875    467899999999999999999999999999862   11100                      


Q ss_pred             eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283          295 FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA  374 (609)
Q Consensus       295 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~  374 (609)
                                  .|.                        +           ||.|                         
T Consensus       381 ------------rf~------------------------D-----------~G~v-------------------------  388 (514)
T KOG2055|consen  381 ------------RFV------------------------D-----------DGSV-------------------------  388 (514)
T ss_pred             ------------EEe------------------------e-----------cCcc-------------------------
Confidence                        000                        0           0000                         


Q ss_pred             eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE
Q 007283          375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA  454 (609)
Q Consensus       375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (609)
                                                                                                .-+.++
T Consensus       389 --------------------------------------------------------------------------~gts~~  394 (514)
T KOG2055|consen  389 --------------------------------------------------------------------------HGTSLC  394 (514)
T ss_pred             --------------------------------------------------------------------------ceeeee
Confidence                                                                                      012345


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEecCC----eeeeeEEEecCCCceEEEEECCCCCEEEEEeC--CCeEEEEEccCCceEEe
Q 007283          455 IAPDGSEAIIGSQDGKLRVYSIRGD----TLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV--NREAIVWDRVSREVKLK  528 (609)
Q Consensus       455 ~sp~g~~l~~gs~dg~i~iw~~~~~----~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~--d~~v~iwd~~~~~~~~~  528 (609)
                      .+++|.++|+||+.|.|.|||.++.    ...+...+..-...|+++.|+||.++||.+|.  +..+|+=.+-+-.. ..
T Consensus       395 ~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TV-Fs  473 (514)
T KOG2055|consen  395 ISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTV-FS  473 (514)
T ss_pred             ecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceee-ec
Confidence            6788899999999999999985432    12223344555678999999999999998874  44566544322111 11


Q ss_pred             ee---cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          529 NM---LYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       529 ~~---~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      .+   ...-+.|+|++|||.+-+||.|..+|.|.+|.+
T Consensus       474 NfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL  511 (514)
T KOG2055|consen  474 NFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKL  511 (514)
T ss_pred             cCCCCCCcccceEEEEecCCCceEEeecCCCceeeEee
Confidence            11   123356999999999999999999999999976

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=2.1e-22  Score=198.38  Aligned_cols=285  Identities=21%  Similarity=0.320  Sum_probs=201.6

Q ss_pred             ceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc---CCeEEEEEcCCcEEEEeCC
Q 007283          235 SVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ---NDFLVIVSLGGTISIFSAN  311 (609)
Q Consensus       235 ~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~i~~~~~~  311 (609)
                      ....+...++-..++.++. ..++++.+...... ..-.+...........+....|.   .+++++++..|.|.+|+++
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~-~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdln  118 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFS-EKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLN  118 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCC-cceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecC
Confidence            3556677788777777764 46788876532111 11111111110000011112343   4578999999999999987


Q ss_pred             CC--CCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceE
Q 007283          312 DL--EKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKI  389 (609)
Q Consensus       312 ~~--~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  389 (609)
                      ..  +.....+..|+..+..++|+...+.++++||.||+|+.||+.........                          
T Consensus       119 k~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~--------------------------  172 (839)
T KOG0269|consen  119 KSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTF--------------------------  172 (839)
T ss_pred             ccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccc--------------------------
Confidence            53  22233578899999999999888999999999999999987432100000                          


Q ss_pred             EEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCC
Q 007283          390 WRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQD  468 (609)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~d  468 (609)
                                                                    ++        ....+..+.|+| .+..++++...
T Consensus       173 ----------------------------------------------~~--------nSESiRDV~fsp~~~~~F~s~~ds  198 (839)
T KOG0269|consen  173 ----------------------------------------------RS--------NSESIRDVKFSPGYGNKFASIHDS  198 (839)
T ss_pred             ----------------------------------------------cc--------cchhhhceeeccCCCceEEEecCC
Confidence                                                          00        012356667777 56789999999


Q ss_pred             CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCc-
Q 007283          469 GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS-  547 (609)
Q Consensus       469 g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~-  547 (609)
                      |.|++||++.... ....+.+|.++|.|+.|+|++.+||+|+.|+.++|||..+.+...........+|.+|+|-|+.+ 
T Consensus       199 G~lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  199 GYLQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY  277 (839)
T ss_pred             ceEEEeeccCchh-HHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence            9999999975432 34567899999999999999999999999999999998765544333344567899999999865 


Q ss_pred             EEEEEe--CCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc--CCCeEEEEeCCCcEEE
Q 007283          548 MVATGS--LDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT--DEHSVVSSGEDACVRV  603 (609)
Q Consensus       548 ~l~s~s--~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~l~s~s~D~~i~~  603 (609)
                      +||+.+  .|-.|.|||+.++.-. ..+...|...++.++|.  |...+.|+|.|+++..
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP-~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~q  336 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIP-YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQ  336 (839)
T ss_pred             hhhhhhccccceEEEEeecccccc-ceeeeccCccccceeccCCCceeeEeecCccHHHH
Confidence            577665  6789999999876533 34456799999999996  5678899999998754

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4.3e-19  Score=178.37  Aligned_cols=457  Identities=18%  Similarity=0.235  Sum_probs=264.1

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCC---EEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGE---WIASADVSGTVRIWGAHNDHVLKKEFR   97 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~---~las~~~d~~i~vWd~~~~~~~~~~~~   97 (609)
                      ...+++|+..++.+-++.|.||+..++.....+.+|..++..+.+.|...   ++.+.+.||+|++||...+..+ +.+.
T Consensus        21 ~avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll-kt~~   99 (792)
T KOG1963|consen   21 PAVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL-KTFD   99 (792)
T ss_pred             ccccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE-EEEe
Confidence            55689999999999999999999999999999999999999999988654   6678999999999999876543 3332


Q ss_pred             ecccceeEEEECC----CCCEEEEEECCCCcceEEEEEcCCCCe-----eEEE--------ecCCccEEEEEEeeCCCeE
Q 007283           98 VLSGRIDDLQWSP----DGLRIVACGDGKGKSLVRAFMWDSGTN-----VGEF--------DGHSRRVLSCAFKPSRPFR  160 (609)
Q Consensus        98 ~~~~~v~~~~~sp----dg~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~--------~~h~~~v~~~~~~p~~~~~  160 (609)
                       ...++-++.+.|    +. ..+..+... ........-+....     +.++        ++|.. -..+.+.+.+.+ 
T Consensus       100 -~~~~v~~~~~~~~~a~~s-~~~~~s~~~-~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~-  174 (792)
T KOG1963|consen  100 -NNLPVHALVYKPAQADIS-ANVYVSVED-YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PKSIVDNNSGEF-  174 (792)
T ss_pred             -cCCceeEEEechhHhCcc-ceeEeeccc-ceeeeecccccccceeeeEeeeccccchhhhhhhcC-CccEEEcCCceE-
Confidence             223344444433    22 122111111 00110000111111     1111        12222 234555666653 


Q ss_pred             EEEecCCCeEEEEeCCCCceee----eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccCcCCCCccc
Q 007283          161 IATCGEDFLVNFYEGPPFKFKL----SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT-ADKIGELSPEDGHKGS  235 (609)
Q Consensus       161 i~t~~~d~~i~~~~~~~~~~~~----~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~  235 (609)
                       ..--.+..+.+|..+......    ....|.-.++|.++||.++.+|+|..||.|.+|.-.. ...-.+.....=|...
T Consensus       175 -~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~  253 (792)
T KOG1963|consen  175 -KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDE  253 (792)
T ss_pred             -EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccc
Confidence             222234446677665533111    1235777799999999999999999999999996333 1111111111126679


Q ss_pred             eEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE--cCCeEEEEEcCCcEEEEeCCCC
Q 007283          236 VYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW--QNDFLVIVSLGGTISIFSANDL  313 (609)
Q Consensus       236 V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~~~~~~~  313 (609)
                      |++++|+++|.+|++||..+-+-.|.+..+.     +.+.+.-.+    .+..+.+  ++++..+...|+.|.+....+.
T Consensus       254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-----kqfLPRLgs----~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl  324 (792)
T KOG1963|consen  254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-----KQFLPRLGS----PILHIVVSPDSDLYSLVLEDNQIHLIKASDL  324 (792)
T ss_pred             cceeEEecCCceEeecccceEEEEEeecCCC-----cccccccCC----eeEEEEEcCCCCeEEEEecCceEEEEeccch
Confidence            9999999999999999999999999986432     333333222    2333333  4557777788999888876443


Q ss_pred             CCCceeeeC-----------CCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEE
Q 007283          314 EKSPLQLSG-----------HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVT  382 (609)
Q Consensus       314 ~~~~~~~~~-----------h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (609)
                      ..... .+|           -.+-.+.+.+. +..+.++-.++.|.|..+++-+..          .+..+...+.    
T Consensus       325 ~~k~t-Isgi~~~~~~~k~~~~~l~t~~~id-pr~~~~vln~~~g~vQ~ydl~td~----------~i~~~~v~~~----  388 (792)
T KOG1963|consen  325 EIKST-ISGIKPPTPSTKTRPQSLTTGVSID-PRTNSLVLNGHPGHVQFYDLYTDS----------TIYKLQVCDE----  388 (792)
T ss_pred             hhhhh-ccCccCCCccccccccccceeEEEc-CCCCceeecCCCceEEEEeccccc----------eeeeEEEEee----
Confidence            21110 000           11112223332 223455566666666666542210          0100000000    


Q ss_pred             EeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEE
Q 007283          383 SGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEA  462 (609)
Q Consensus       383 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l  462 (609)
                                          +              ...++        +             +..-.+++++.+-+|.++
T Consensus       389 --------------------n--------------~~~~~--------~-------------n~~v~itav~~~~~gs~m  413 (792)
T KOG1963|consen  389 --------------------N--------------YSDGD--------V-------------NIQVGITAVARSRFGSWM  413 (792)
T ss_pred             --------------------c--------------ccCCc--------c-------------eeEEeeeeehhhccceEE
Confidence                                0              00000        0             000113333333444444


Q ss_pred             EEE--------eCC--CcEEEEEecCCee---eeeEEEecCCCceEEEEEC-CCCC-EEEEEeCCCeEEEEEccCCceE-
Q 007283          463 IIG--------SQD--GKLRVYSIRGDTL---TEEAVLEKHRGAVSVIRYS-PDVS-MFASGDVNREAIVWDRVSREVK-  526 (609)
Q Consensus       463 ~~g--------s~d--g~i~iw~~~~~~~---~~~~~~~~h~~~i~~v~~s-~~~~-~l~s~s~d~~v~iwd~~~~~~~-  526 (609)
                      ++.        ..|  -.+++|-......   ....+...|...+.+..|. |-.. .+++++.|+.+++|-+...+.. 
T Consensus       414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~  493 (792)
T KOG1963|consen  414 ATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIY  493 (792)
T ss_pred             EEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccC
Confidence            432        223  3578897654431   1233456788776665553 3333 8999999999999987432211 


Q ss_pred             --------EeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          527 --------LKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       527 --------~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                              ...-..|..++++++||.||..| +.+.|++|.+||..+
T Consensus       494 k~~s~W~c~~i~sy~k~~i~a~~fs~dGsll-a~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  494 KKSSNWTCKAIGSYHKTPITALCFSQDGSLL-AVSFDDTITIWDYDT  539 (792)
T ss_pred             cCccceEEeeeeccccCcccchhhcCCCcEE-EEecCCEEEEecCCC
Confidence                    11123578899999999999765 567889999999876

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.89  E-value=1.9e-21  Score=187.62  Aligned_cols=321  Identities=20%  Similarity=0.256  Sum_probs=209.6

Q ss_pred             EEEe--eCCCeEEEEecCCCeEEEEeCCCCcee------eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283          151 CAFK--PSRPFRIATCGEDFLVNFYEGPPFKFK------LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       151 ~~~~--p~~~~~i~t~~~d~~i~~~~~~~~~~~------~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                      +.|+  |....+|+.+..|+.|.++|.......      ..+..|.+.|..+.|.|....|++++.|.+++.||+++..+
T Consensus        55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l  134 (720)
T KOG0321|consen   55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRL  134 (720)
T ss_pred             ccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeecccee
Confidence            4553  455678999999999999987654433      34567999999999999666899999999999999999887


Q ss_pred             ccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEc
Q 007283          223 IGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL  301 (609)
Q Consensus       223 ~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (609)
                      ...- ...||.+.|.+++|.|+.. .|++|+.||.|.|||++... ......+..        .           +.+..
T Consensus       135 ~G~~-~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~-~d~~e~~~~--------~-----------~~~~~  193 (720)
T KOG0321|consen  135 VGGR-LNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNG-VDALEEFDN--------R-----------IYGRH  193 (720)
T ss_pred             ecce-eecccccccchhhhccCCCcceeeccCCCcEEEEEEeccc-hhhHHHHhh--------h-----------hhccc
Confidence            7652 2359999999999999765 78999999999999987421 000000000        0           00000


Q ss_pred             CCcEEEEeCCCCCCCceeeeCCCCCe----EEEEEecCCCCEEEEEec-CCcEEEEecCccccceeccccccceeEeeee
Q 007283          302 GGTISIFSANDLEKSPLQLSGHMKNV----TALTVLNIDPKVILSSSY-DGLIVKWIQGIGYGGKLQRKENSQIKCFAAI  376 (609)
Q Consensus       302 ~g~i~~~~~~~~~~~~~~~~~h~~~v----~~~~~~~~~~~~~~t~s~-dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~  376 (609)
                      .+. - --..........-..|...+    +.+.|-  +...+++++. |+.|++||+...+....+.    ++.     
T Consensus       194 n~~-p-tpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~r~e----p~~-----  260 (720)
T KOG0321|consen  194 NTA-P-TPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAYRQE----PRG-----  260 (720)
T ss_pred             cCC-C-CCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeecccccccccC----CCc-----
Confidence            000 0 00000000011112233333    334443  4468888887 9999999876432111100    000     


Q ss_pred             CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                                                          ...+..+.                        .-...+.++...
T Consensus       261 ------------------------------------~~~~~t~s------------------------krs~G~~nL~lD  280 (720)
T KOG0321|consen  261 ------------------------------------SDKYPTHS------------------------KRSVGQVNLILD  280 (720)
T ss_pred             ------------------------------------ccCccCcc------------------------cceeeeEEEEec
Confidence                                                00000000                        000124566666


Q ss_pred             CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCce--EEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCC
Q 007283          457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAV--SVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT  534 (609)
Q Consensus       457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i--~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~  534 (609)
                      ..|.++.+.+.|+.|++|++.+........+.+|...-  ..-..|||+.++++|+.|...++|.+...+.....+.+|.
T Consensus       281 ssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght  360 (720)
T KOG0321|consen  281 SSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHT  360 (720)
T ss_pred             CCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcc
Confidence            77888777777999999999876654444444443211  1224689999999999999999999888777666788999


Q ss_pred             CceEEEEECCCC-cEEEEEeCCCeEEEEEcCC
Q 007283          535 ARINCLAWSPNN-SMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       535 ~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~  565 (609)
                      ..|++++|.|.. .-++|++.|-.+++|++..
T Consensus       361 ~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  361 REVTTVRWLPSATTPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             eEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence            999999998753 3467779999999999854

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=1.1e-21  Score=193.44  Aligned_cols=282  Identities=20%  Similarity=0.308  Sum_probs=208.7

Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-eeeEEEe--ecc---cceeEEEECC-CCCEEEEEECCCCcceEEEE
Q 007283           58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDH-VLKKEFR--VLS---GRIDDLQWSP-DGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~-~~~~~~~--~~~---~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~  130 (609)
                      ...+++...++-..|+.++. -..+|+.+.... .+...++  .-.   -.+..+.|+. +.+.|+++..+.   .+.+|
T Consensus        40 ~~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG---~i~vW  115 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNG---VISVW  115 (839)
T ss_pred             cccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCC---cEEEE
Confidence            34667777888888877754 367788776432 1111122  111   1346678886 345666655332   46667


Q ss_pred             EcCC---CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC-CCEEEEE
Q 007283          131 MWDS---GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD-GSKFISV  206 (609)
Q Consensus       131 ~~~~---~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~  206 (609)
                      +...   ++.+..|+.|.+.+.+++|++..+.++++|++|++|++||.+..+-...+++....|..|.|+|. +..|+++
T Consensus       116 dlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~  195 (839)
T KOG0269|consen  116 DLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASI  195 (839)
T ss_pred             ecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEe
Confidence            7665   55667899999999999999999999999999999999999988888889999999999999986 6789999


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML  286 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  286 (609)
                      .+.|.+++||++..+.-...  ..+|.+.|.++.|+|++.+|||||.|++|+|||+..... +.+.++.-      ...+
T Consensus       196 ~dsG~lqlWDlRqp~r~~~k--~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tInT------iapv  266 (839)
T KOG0269|consen  196 HDSGYLQLWDLRQPDRCEKK--LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTINT------IAPV  266 (839)
T ss_pred             cCCceEEEeeccCchhHHHH--hhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEee------ccee
Confidence            99999999999876643322  358999999999999999999999999999999874322 22222211      0122


Q ss_pred             EEEEEcCC---eEEEEE--cCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEE
Q 007283          287 VGCLWQND---FLVIVS--LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW  352 (609)
Q Consensus       287 ~~~~~~~~---~~~~~~--~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W  352 (609)
                      -...|.+.   .|++.+  .+-.|++|++.-.--+..++..|...++.++|-..+...+.+++.|+++..-
T Consensus       267 ~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh  337 (839)
T KOG0269|consen  267 GRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH  337 (839)
T ss_pred             eeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence            33445543   344433  3567999998766666678899999999999987667889999999998654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.89  E-value=4e-20  Score=179.12  Aligned_cols=268  Identities=15%  Similarity=0.231  Sum_probs=191.4

Q ss_pred             eEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283           20 ILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      ..+.+.|||..|+-..|+++++||.+++.++..+.+|++.|+|++++.||+++|||++|+.|.||...-...++.   .|
T Consensus        16 ~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkY---SH   92 (1081)
T KOG1538|consen   16 NDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKY---SH   92 (1081)
T ss_pred             heeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeee---cc
Confidence            479999999999999999999999999999999999999999999999999999999999999998654444432   57


Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC--CC
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG--PP  177 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~--~~  177 (609)
                      ...|.++.|.|-...|++|+-..      .-.|......-.-.....++.+|+|..||.+ ++-|-.+|+|.+-+.  ++
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLsd------FglWS~~qK~V~K~kss~R~~~CsWtnDGqy-lalG~~nGTIsiRNk~gEe  165 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLSD------FGLWSPEQKSVSKHKSSSRIICCSWTNDGQY-LALGMFNGTISIRNKNGEE  165 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchhh------ccccChhhhhHHhhhhheeEEEeeecCCCcE-EEEeccCceEEeecCCCCc
Confidence            88999999999999999987432      2245432211111123467889999999985 889999999988752  22


Q ss_pred             CceeeeccCcccceEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDG-----SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg-----~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      .-.+....|...+|.+++|+|..     ..++++....++-.|.. +|+.|..-.   .-.-.-.|+.+.|+|++++.|+
T Consensus       166 k~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~L-sG~~Igk~r---~L~FdP~CisYf~NGEy~LiGG  241 (1081)
T KOG1538|consen  166 KVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQL-SGKQIGKDR---ALNFDPCCISYFTNGEYILLGG  241 (1081)
T ss_pred             ceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEe-cceeecccc---cCCCCchhheeccCCcEEEEcc
Confidence            22333445678899999999973     25666777777766654 233332111   1112235788899999999999


Q ss_pred             CCCcEEEeecccCCCCceEEEeccCCCCCccceEEE--EEEcCCeEEEEEcCCcEEEEeC
Q 007283          253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG--CLWQNDFLVIVSLGGTISIFSA  310 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~i~~~~~  310 (609)
                      .|+.+.+|-.+    +....++..     .+.-+.+  .-.+++.++.+..||++..|++
T Consensus       242 sdk~L~~fTR~----GvrLGTvg~-----~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  242 SDKQLSLFTRD----GVRLGTVGE-----QDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             CCCceEEEeec----CeEEeeccc-----cceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            99999999643    334443321     1122222  2234556667777777777764

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.89  E-value=1.9e-20  Score=164.34  Aligned_cols=303  Identities=17%  Similarity=0.309  Sum_probs=207.1

Q ss_pred             ccCcCceeEEeecCC-CCeEEEeC-CCEEEEEeCCCCcc---------------ccccccCCCCcEEEEECC-CCCEEEE
Q 007283           13 STERGRGILISGHPK-SNSILYTN-GRSVIILDLSNPLQ---------------VSIYGEHAYPATVARFSP-NGEWIAS   74 (609)
Q Consensus        13 ~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~i~~~~~~~~---------------~~~~~~h~~~v~~~~~sp-~g~~las   74 (609)
                      .+|+|....++..+- |.++++.+ ++.+.+||+++-..               ...-.+|+..|+.+.|=| |.-++.|
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            578899999998876 57777765 47999999976441               111348888999999988 4456778


Q ss_pred             EeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCC--EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEE
Q 007283           75 ADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL--RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCA  152 (609)
Q Consensus        75 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  152 (609)
                      ++.|.+++|||..+-+.. ..| ...+.|+.-++||-..  -|+++|...  .-+|+-+...+...+++.||.+.|.++.
T Consensus       120 sSFDhtlKVWDtnTlQ~a-~~F-~me~~VYshamSp~a~sHcLiA~gtr~--~~VrLCDi~SGs~sH~LsGHr~~vlaV~  195 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEA-VDF-KMEGKVYSHAMSPMAMSHCLIAAGTRD--VQVRLCDIASGSFSHTLSGHRDGVLAVE  195 (397)
T ss_pred             ccccceEEEeecccceee-EEe-ecCceeehhhcChhhhcceEEEEecCC--CcEEEEeccCCcceeeeccccCceEEEE
Confidence            999999999999875421 223 2467899999999643  566665332  2478888889999999999999999999


Q ss_pred             EeeCCCeEEEEecCCCeEEEEeCCCC-ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCC
Q 007283          153 FKPSRPFRIATCGEDFLVNFYEGPPF-KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDG  231 (609)
Q Consensus       153 ~~p~~~~~i~t~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  231 (609)
                      |+|...+++++|+.|+.+++||++.. .+.                               ++.|...++....+....+
T Consensus       196 Wsp~~e~vLatgsaDg~irlWDiRrasgcf-------------------------------~~lD~hn~k~~p~~~~n~a  244 (397)
T KOG4283|consen  196 WSPSSEWVLATGSADGAIRLWDIRRASGCF-------------------------------RVLDQHNTKRPPILKTNTA  244 (397)
T ss_pred             eccCceeEEEecCCCceEEEEEeeccccee-------------------------------EEeecccCccCcccccccc
Confidence            99999999999999999999997642 111                               1112112121111112247


Q ss_pred             CccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCC-ceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeC
Q 007283          232 HKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG-KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSA  310 (609)
Q Consensus       232 h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~  310 (609)
                      |.+.|++++|+.|+.++++++.|..+++|+...+... +............. .+.+.+. ..+.++..-.++.+.++++
T Consensus       245 h~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~-~~~~~~~-~s~vfv~~p~~~~lall~~  322 (397)
T KOG4283|consen  245 HYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSF-AVHIQSM-DSDVFVLFPNDGSLALLNL  322 (397)
T ss_pred             ccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccc-eEEEeec-ccceEEEEecCCeEEEEEc
Confidence            9999999999999999999999999999998643211 00000000000000 0111111 1233444455688888876


Q ss_pred             CCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283          311 NDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       311 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~  354 (609)
                      -+. .....+.+|-+.+.+.++- ++=+...++..|+.|..|.+
T Consensus       323 ~sg-s~ir~l~~h~k~i~c~~~~-~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  323 LEG-SFVRRLSTHLKRINCAAYR-PDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             cCc-eEEEeeecccceeeEEeec-CchhhhhccccCCccccccc
Confidence            543 2345678898888776653 23356889999999999955

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=1.2e-20  Score=165.47  Aligned_cols=302  Identities=20%  Similarity=0.248  Sum_probs=216.6

Q ss_pred             ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc------------ee---eeccCcccceEEEEEcCC-CCEEEE
Q 007283          142 DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK------------FK---LSHRGHSNFVNCVRFSPD-GSKFIS  205 (609)
Q Consensus       142 ~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~------------~~---~~~~~h~~~v~~l~~s~d-g~~l~s  205 (609)
                      ..|.+.|.++.+.|.....+++|+.|+.+.+||.+...            ++   .-..+|+..|..+.|-|- ..++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46889999999999877779999999999999965432            11   113468889999999884 458899


Q ss_pred             EeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC---CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCc
Q 007283          206 VSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG---KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV  282 (609)
Q Consensus       206 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  282 (609)
                      ++.|.++++||..+-+....+    ..++.|++-++||-.   .++|+|..|-.|++.|+..   +              
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F----~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~S---G--------------  178 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDF----KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIAS---G--------------  178 (397)
T ss_pred             ccccceEEEeecccceeeEEe----ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccC---C--------------
Confidence            999999999999887766555    356789999999954   4788999999999999862   1              


Q ss_pred             cceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccccee
Q 007283          283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL  362 (609)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~  362 (609)
                                                      ...+.++||.+.|.++.|++.....++||+.||.|++||.....    
T Consensus       179 --------------------------------s~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras----  222 (397)
T KOG4283|consen  179 --------------------------------SFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS----  222 (397)
T ss_pred             --------------------------------cceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc----
Confidence                                            12356889999999999998888899999999999999864211    


Q ss_pred             ccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeE
Q 007283          363 QRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVS  442 (609)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (609)
                              .|+.                +++..+.+.           +          ..           +     ..
T Consensus       223 --------gcf~----------------~lD~hn~k~-----------~----------p~-----------~-----~~  241 (397)
T KOG4283|consen  223 --------GCFR----------------VLDQHNTKR-----------P----------PI-----------L-----KT  241 (397)
T ss_pred             --------ceeE----------------EeecccCcc-----------C----------cc-----------c-----cc
Confidence                    1111                111100000           0          00           0     00


Q ss_pred             EeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEE-EecCCCc---eEEEEECCCCCEEEEEeCCCeEEEE
Q 007283          443 TINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV-LEKHRGA---VSVIRYSPDVSMFASGDVNREAIVW  518 (609)
Q Consensus       443 ~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~-~~~h~~~---i~~v~~s~~~~~l~s~s~d~~v~iw  518 (609)
                      ...+...+..++++.||.++++.+.|..+++|+...+....+.. ...|...   -.-+. +.+...++---.|+++.++
T Consensus       242 n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall  320 (397)
T KOG4283|consen  242 NTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALL  320 (397)
T ss_pred             cccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEE
Confidence            01122347889999999999999999999999998765322110 0111111   01122 3444444444566888888


Q ss_pred             EccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          519 DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       519 d~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      ++..++. +..+..|-..|.|.+|-|+=+...+|+.|+.|..|-.
T Consensus       321 ~~~sgs~-ir~l~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  321 NLLEGSF-VRRLSTHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             EccCceE-EEeeecccceeeEEeecCchhhhhccccCCccccccc
Confidence            8777654 4567889999999999999888999999999999976

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.88  E-value=1.7e-19  Score=173.90  Aligned_cols=188  Identities=20%  Similarity=0.294  Sum_probs=130.5

Q ss_pred             CCeEEEe---CCCEEEEEeCCC----CccccccccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc--eee---E
Q 007283           28 SNSILYT---NGRSVIILDLSN----PLQVSIYGEHAYPATVARFSPN-GEWIASADVSGTVRIWGAHNDH--VLK---K   94 (609)
Q Consensus        28 ~~~l~~~---~~~~~~i~~~~~----~~~~~~~~~h~~~v~~~~~sp~-g~~las~~~d~~i~vWd~~~~~--~~~---~   94 (609)
                      +..|++-   .|+.+-|..+..    .+.+..+.+|.+.|+.+.|+|- ..+|||+|.|..|+||.+..+.  .+.   .
T Consensus        43 ~~flAFn~e~~G~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~  122 (1012)
T KOG1445|consen   43 ADFLAFNIEGEGGKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEI  122 (1012)
T ss_pred             cceEEEeecCCCceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcce
Confidence            3455543   244566666642    1234567899999999999994 5688999999999999987432  110   1


Q ss_pred             EEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEe
Q 007283           95 EFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE  174 (609)
Q Consensus        95 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~  174 (609)
                      .+...+-.|.++.|+|-..-|++++...   .+.+|+..+++.+.++.+|.+.|.+..|+.||.. +++...|..|++||
T Consensus       123 ~~g~~~~~vE~l~fHpTaDgil~s~a~g---~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~l-latscKdkqirifD  198 (1012)
T KOG1445|consen  123 DVGGGNVIVECLRFHPTADGILASGAHG---SVYITDISTQKTAVELSGHTDKVQSADWSEDGKL-LATSCKDKQIRIFD  198 (1012)
T ss_pred             eecCCceEEEEeecccCcCceEEeccCc---eEEEEEcccCceeecccCCchhhhccccccCCce-EeeecCCcceEEeC
Confidence            1222344689999999655555555433   3567777788889999999999999999999984 88889999999999


Q ss_pred             CCC-CceeeeccCcccc-eEEEEEcCCCCEEEEEeCC----CcEEEEeCCC
Q 007283          175 GPP-FKFKLSHRGHSNF-VNCVRFSPDGSKFISVSSD----KKGIIYDGKT  219 (609)
Q Consensus       175 ~~~-~~~~~~~~~h~~~-v~~l~~s~dg~~l~s~~~d----~~i~iwd~~~  219 (609)
                      .+. .+.++...+|.+. =..+.|.-+-..|++-+.+    ..+++||.+.
T Consensus       199 PRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~  249 (1012)
T KOG1445|consen  199 PRASMEPIQTTEGHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRK  249 (1012)
T ss_pred             CccCCCccccccccccchhheeeeccchhhhhhcccchhhheeeeeeeccc
Confidence            653 3445555677642 2345676654566665543    4578888654

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=3.2e-20  Score=164.38  Aligned_cols=281  Identities=18%  Similarity=0.213  Sum_probs=196.7

Q ss_pred             CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283          145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      .+.|.++.|+|.+.. ++++++|+.+++|+.+.......+ .|..++.+++|.++. .+++|+.|+.|+.+|..+++...
T Consensus        13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d~~-~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFADES-TIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccCCc-eEEEeccCceEEEEEecCCccee
Confidence            567999999988876 556679999999998877554444 488899999999864 68999999999999998887543


Q ss_pred             ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCc
Q 007283          225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT  304 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  304 (609)
                      ..    .|...|.++.+++....+++||.|++|++||.+..   ....++..      ...+.+..-.++.|++++.+..
T Consensus        90 ig----th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~---~~~~~~d~------~kkVy~~~v~g~~LvVg~~~r~  156 (323)
T KOG1036|consen   90 IG----THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK---VVVGTFDQ------GKKVYCMDVSGNRLVVGTSDRK  156 (323)
T ss_pred             ec----cCCCceEEEEeeccCCeEEEcccCccEEEEecccc---cccccccc------CceEEEEeccCCEEEEeecCce
Confidence            32    69999999999998888999999999999998731   11111111      1123334446788999999999


Q ss_pred             EEEEeCCCCCCCce-eeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEE
Q 007283          305 ISIFSANDLEKSPL-QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTS  383 (609)
Q Consensus       305 i~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (609)
                      +.+|+++....... .-..-.-.+.++++.+ +..-++.+|-||.|.+=..+.....+      +               
T Consensus       157 v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~sSieGRVavE~~d~s~~~~------s---------------  214 (323)
T KOG1036|consen  157 VLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVVSSIEGRVAVEYFDDSEEAQ------S---------------  214 (323)
T ss_pred             EEEEEcccccchhhhccccceeEEEEEEEec-CCCceEEEeecceEEEEccCCchHHh------h---------------
Confidence            99999876543321 1112223566777765 44557788889988765443220000      0               


Q ss_pred             eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEE
Q 007283          384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAI  463 (609)
Q Consensus       384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  463 (609)
                                                  ...++.-|..      .+++.            ..-.||++++|+|-.+.||
T Consensus       215 ----------------------------kkyaFkCHr~------~~~~~------------~~~yPVNai~Fhp~~~tfa  248 (323)
T KOG1036|consen  215 ----------------------------KKYAFKCHRL------SEKDT------------EIIYPVNAIAFHPIHGTFA  248 (323)
T ss_pred             ----------------------------hceeEEeeec------ccCCc------------eEEEEeceeEeccccceEE
Confidence                                        0000000000      00000            0115799999999999999


Q ss_pred             EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeC
Q 007283          464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV  511 (609)
Q Consensus       464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~  511 (609)
                      +|+.||.|.+||....+.  ...+.+....|.+++|+.||..||.|+.
T Consensus       249 TgGsDG~V~~Wd~~~rKr--l~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  249 TGGSDGIVNIWDLFNRKR--LKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             ecCCCceEEEccCcchhh--hhhccCCCCceEEEEeccCCCeEEEEec
Confidence            999999999999875542  2345566778999999999999999874

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.88  E-value=2.3e-20  Score=164.97  Aligned_cols=270  Identities=21%  Similarity=0.377  Sum_probs=178.0

Q ss_pred             cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc-CcCCCCccceEEEEECC--CCCeEEEEeCCCcEEEee
Q 007283          185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL-SPEDGHKGSVYAVSWSP--DGKQVLTASADKSAKVWD  261 (609)
Q Consensus       185 ~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~h~~~V~~l~~sp--d~~~l~s~s~d~~i~iwd  261 (609)
                      .+|.+-|+|+.|.+-|+.+|+++.|+++.|||.+....-... ..-+.|.+.|..+.|.+  -|+.+|++|.|+++.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            468889999999999999999999999999996443321111 12247999999999965  589999999999999997


Q ss_pred             cccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCC-CCEE
Q 007283          262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNID-PKVI  340 (609)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~  340 (609)
                      -...       .....+                           +-|      .....+......|+.+.|.+.. +-.+
T Consensus        90 E~~~-------~~~~~~---------------------------~~W------v~~ttl~DsrssV~DV~FaP~hlGLkl  129 (361)
T KOG2445|consen   90 EQEK-------SEEAHG---------------------------RRW------VRRTTLVDSRSSVTDVKFAPKHLGLKL  129 (361)
T ss_pred             eccc-------cccccc---------------------------cee------EEEEEeecCCcceeEEEecchhcceEE
Confidence            4211       000000                           001      0112344455677777777433 3467


Q ss_pred             EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283          341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY  420 (609)
Q Consensus       341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (609)
                      ++++.||.+|+++.-.-.                             .+..|.++.                        
T Consensus       130 A~~~aDG~lRIYEA~dp~-----------------------------nLs~W~Lq~------------------------  156 (361)
T KOG2445|consen  130 AAASADGILRIYEAPDPM-----------------------------NLSQWTLQH------------------------  156 (361)
T ss_pred             EEeccCcEEEEEecCCcc-----------------------------ccccchhhh------------------------
Confidence            888888888887431100                             011111110                        


Q ss_pred             CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEEC
Q 007283          421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYS  500 (609)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s  500 (609)
                                                  ++..+.                              .....+..+..||.|+
T Consensus       157 ----------------------------Ei~~~~------------------------------~pp~~~~~~~~CvsWn  178 (361)
T KOG2445|consen  157 ----------------------------EIQNVI------------------------------DPPGKNKQPCFCVSWN  178 (361)
T ss_pred             ----------------------------hhhhcc------------------------------CCcccccCcceEEeec
Confidence                                        000000                              0112344455666666


Q ss_pred             CC---CCEEEEEeCC-----CeEEEEEccCCce---EEeeecCCCCceEEEEECCCC----cEEEEEeCCCeEEEEEcCC
Q 007283          501 PD---VSMFASGDVN-----REAIVWDRVSREV---KLKNMLYHTARINCLAWSPNN----SMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       501 ~~---~~~l~s~s~d-----~~v~iwd~~~~~~---~~~~~~~h~~~i~~l~~s~d~----~~l~s~s~D~~v~vw~~~~  565 (609)
                      |.   -.+||.|+.+     +.++||.......   +...+..|.++|+.++|.|+-    .+||+|+.|| |+||++..
T Consensus       179 ~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~  257 (361)
T KOG2445|consen  179 PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKV  257 (361)
T ss_pred             cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEee
Confidence            54   3567777655     4688887554332   234567899999999999963    5799999999 99999862


Q ss_pred             CC------------------CcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          566 PA------------------SSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       566 ~~------------------~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      ..                  .+++..+..|.+.||.+.|. -+..|+|.|.||++++|..
T Consensus       258 ~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  258 ARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             ccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhh
Confidence            11                  01123467899999999999 8899999999999999975

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=1e-20  Score=182.62  Aligned_cols=300  Identities=19%  Similarity=0.197  Sum_probs=211.4

Q ss_pred             cccCCCCcEE--EEECC---CCCEEEEEeCCCcEEEEcCCCCce-----eeEEEeecccceeEEEECCCCCEEEEEECCC
Q 007283           53 YGEHAYPATV--ARFSP---NGEWIASADVSGTVRIWGAHNDHV-----LKKEFRVLSGRIDDLQWSPDGLRIVACGDGK  122 (609)
Q Consensus        53 ~~~h~~~v~~--~~~sp---~g~~las~~~d~~i~vWd~~~~~~-----~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~  122 (609)
                      +..|.-++.-  ..|++   ...+||-+..||.|.++|......     ....+..|...|..+.|-|....|++...  
T Consensus        43 ~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG--  120 (720)
T KOG0321|consen   43 YANDGLPVPPFADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG--  120 (720)
T ss_pred             cccCCCCCCCccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC--
Confidence            4444445544  56665   346788999999999999864321     11335568889999999995556665543  


Q ss_pred             CcceEEEEEcCCCCeeEE--EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc---------------------
Q 007283          123 GKSLVRAFMWDSGTNVGE--FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK---------------------  179 (609)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~--~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~---------------------  179 (609)
                       ++.+++|+....+..+.  +.||...|.+++|+|+++.+|++||.|+.+.+||..-..                     
T Consensus       121 -DsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp  199 (720)
T KOG0321|consen  121 -DSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP  199 (720)
T ss_pred             -CceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence             34688888888877766  889999999999999999999999999999999842110                     


Q ss_pred             ------eeeeccCcccceEE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccCcC-----CCC---ccceEEEEE
Q 007283          180 ------FKLSHRGHSNFVNC---VRFSPDGSKFISVSS-DKKGIIYDGKTADKIGELSPE-----DGH---KGSVYAVSW  241 (609)
Q Consensus       180 ------~~~~~~~h~~~v~~---l~~s~dg~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~-----~~h---~~~V~~l~~  241 (609)
                            ....-+.|...|.+   +.+..|...||+++. |+.|++||+++........+.     ..|   .-.+.++..
T Consensus       200 skp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l  279 (720)
T KOG0321|consen  200 SKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL  279 (720)
T ss_pred             CchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe
Confidence                  00111223344444   555678889999988 999999999876655433211     122   235677777


Q ss_pred             CCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc-eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceee
Q 007283          242 SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD-MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQL  320 (609)
Q Consensus       242 spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  320 (609)
                      ...|.+|+..+.|+.|++|++..... .....+....  .... ......+.+.++++++.+...++|.+...+..+..+
T Consensus       280 DssGt~L~AsCtD~sIy~ynm~s~s~-sP~~~~sg~~--~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l  356 (720)
T KOG0321|consen  280 DSSGTYLFASCTDNSIYFYNMRSLSI-SPVAEFSGKL--NSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL  356 (720)
T ss_pred             cCCCCeEEEEecCCcEEEEeccccCc-CchhhccCcc--cceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh
Confidence            77788888888899999999863211 1111111000  0000 112234567799999999999999998888788889


Q ss_pred             eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccc
Q 007283          321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGY  358 (609)
Q Consensus       321 ~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~  358 (609)
                      .||...|.++++.+..-.-++||++|.++++|++..+.
T Consensus       357 ~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l  394 (720)
T KOG0321|consen  357 LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL  394 (720)
T ss_pred             hCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence            99999999999986555568899999999999885543

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=7.4e-20  Score=161.75  Aligned_cols=270  Identities=17%  Similarity=0.300  Sum_probs=187.9

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc---eeeEEEeecccceeEEEECCC--CCEEEEEECCCCcce
Q 007283           52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH---VLKKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSL  126 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~---~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~  126 (609)
                      +..+|++-|.++.|.+-|+.+||++.|++|+|||...+.   .+....+.|.+.|..+.|.+-  |+.+++++.+++   
T Consensus         8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt---   84 (361)
T KOG2445|consen    8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT---   84 (361)
T ss_pred             cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc---
Confidence            456899999999999999999999999999999975432   344567889999999999874  899999987664   


Q ss_pred             EEEEEcCCC---------CeeEEEecCCccEEEEEEeeCC-CeEEEEecCCCeEEEEeCCC------Cceeeecc-----
Q 007283          127 VRAFMWDSG---------TNVGEFDGHSRRVLSCAFKPSR-PFRIATCGEDFLVNFYEGPP------FKFKLSHR-----  185 (609)
Q Consensus       127 ~~~~~~~~~---------~~~~~~~~h~~~v~~~~~~p~~-~~~i~t~~~d~~i~~~~~~~------~~~~~~~~-----  185 (609)
                      +++|.=+..         ....++......|+.+.|.|.. ...+|+++.|+++++|+.+.      +.+..++.     
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p  164 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP  164 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence            334332100         1133566777899999999863 34699999999999998532      22222222     


Q ss_pred             --CcccceEEEEEcCC---CCEEEEEeCC-----CcEEEEeCCCCc-cccccCcCCCCccceEEEEECCCC----CeEEE
Q 007283          186 --GHSNFVNCVRFSPD---GSKFISVSSD-----KKGIIYDGKTAD-KIGELSPEDGHKGSVYAVSWSPDG----KQVLT  250 (609)
Q Consensus       186 --~h~~~v~~l~~s~d---g~~l~s~~~d-----~~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~spd~----~~l~s  250 (609)
                        .+...-.|+.|+|.   ..+||.|+.+     +.++||...... +........+|+.+|+.++|.|+-    .+||+
T Consensus       165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAv  244 (361)
T KOG2445|consen  165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAV  244 (361)
T ss_pred             cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEE
Confidence              46677889999975   4478877766     478888754433 333333345899999999999962    47999


Q ss_pred             EeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEE
Q 007283          251 ASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTAL  330 (609)
Q Consensus       251 ~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~  330 (609)
                      ++.|| |+||.+..............  +....                    .+.       -....++.+|...|..+
T Consensus       245 A~kDg-v~I~~v~~~~s~i~~ee~~~--~~~~~--------------------~l~-------v~~vs~~~~H~~~VWrv  294 (361)
T KOG2445|consen  245 ATKDG-VRIFKVKVARSAIEEEEVLA--PDLMT--------------------DLP-------VEKVSELDDHNGEVWRV  294 (361)
T ss_pred             eecCc-EEEEEEeeccchhhhhcccC--CCCcc--------------------ccc-------eEEeeeccCCCCceEEE
Confidence            99999 99999863211100000000  00000                    000       01123467899999999


Q ss_pred             EEecCCCCEEEEEecCCcEEEEecC
Q 007283          331 TVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       331 ~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                      .+. ..+..+++.|.||+||+|..+
T Consensus       295 ~wN-mtGtiLsStGdDG~VRLWkan  318 (361)
T KOG2445|consen  295 RWN-MTGTILSSTGDDGCVRLWKAN  318 (361)
T ss_pred             EEe-eeeeEEeecCCCceeeehhhh
Confidence            986 456789999999999999543

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=1.1e-18  Score=170.72  Aligned_cols=286  Identities=16%  Similarity=0.156  Sum_probs=184.6

Q ss_pred             EEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccCcCCCCccceEE
Q 007283          160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA  238 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~  238 (609)
                      .+++++.|+.+.+||..+++....+.++.. +.+++|+|+|+.+ ++++.++.+++||..+++....+.   .+. .+..
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~---~~~-~~~~   77 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP---SGP-DPEL   77 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc---CCC-CccE
Confidence            588999999999999988887777766544 6789999999876 567788999999998887665442   222 3567


Q ss_pred             EEECCCCCeEEEE-eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCc
Q 007283          239 VSWSPDGKQVLTA-SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSP  317 (609)
Q Consensus       239 l~~spd~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~  317 (609)
                      ++|+|+++.++.+ +.|+.+++||+..   .+....+.                                          
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~---~~~~~~~~------------------------------------------  112 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIET---RKVLAEIP------------------------------------------  112 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCC---CeEEeEee------------------------------------------
Confidence            8999999977554 5689999999863   22211110                                          


Q ss_pred             eeeeCCCCCeEEEEEecCCCCEEEEEecCCc-EEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccC
Q 007283          318 LQLSGHMKNVTALTVLNIDPKVILSSSYDGL-IVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQG  396 (609)
Q Consensus       318 ~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~-i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  396 (609)
                           +...+..+++++ ++.++++++.++. +..|+.....                     .                
T Consensus       113 -----~~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~---------------------~----------------  149 (300)
T TIGR03866       113 -----VGVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYE---------------------I----------------  149 (300)
T ss_pred             -----CCCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCe---------------------E----------------
Confidence                 001123345543 4466666666554 3344321100                     0                


Q ss_pred             CccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEE-eCCCcEEEEE
Q 007283          397 DQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG-SQDGKLRVYS  475 (609)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~g-s~dg~i~iw~  475 (609)
                                                                  ............++++|+|++++++ ..++.|++||
T Consensus       150 --------------------------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d  185 (300)
T TIGR03866       150 --------------------------------------------VDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVID  185 (300)
T ss_pred             --------------------------------------------EEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence                                                        0000001123457889999988655 4699999999


Q ss_pred             ecCCeeeeeEEEec---CCC--ceEEEEECCCCCEEEE-EeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEE
Q 007283          476 IRGDTLTEEAVLEK---HRG--AVSVIRYSPDVSMFAS-GDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV  549 (609)
Q Consensus       476 ~~~~~~~~~~~~~~---h~~--~i~~v~~s~~~~~l~s-~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l  549 (609)
                      ++++..........   +..  ....++|+|+++++.. ...++++.+||..+.+.. ... .+...+.+++|+|+|++|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~~~~~~~g~~l  263 (300)
T TIGR03866       186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LVGQRVWQLAFTPDEKYL  263 (300)
T ss_pred             cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-EeCCCcceEEECCCCCEE
Confidence            98765432222111   111  2346889999998544 345678999998765543 222 345579999999999999


Q ss_pred             EEE-eCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc
Q 007283          550 ATG-SLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT  587 (609)
Q Consensus       550 ~s~-s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s  587 (609)
                      +++ ..+++|++||+.... .+..+..  ....+.++|+
T Consensus       264 ~~~~~~~~~i~v~d~~~~~-~~~~~~~--~~~~~~~~~~  299 (300)
T TIGR03866       264 LTTNGVSNDVSVIDVAALK-VIKSIKV--GRLPWGVVVR  299 (300)
T ss_pred             EEEcCCCCeEEEEECCCCc-EEEEEEc--ccccceeEeC
Confidence            876 569999999998643 2223322  2445777765

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.87  E-value=1e-18  Score=170.87  Aligned_cols=185  Identities=17%  Similarity=0.198  Sum_probs=134.2

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccE
Q 007283           69 GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRV  148 (609)
Q Consensus        69 g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  148 (609)
                      +++++|++.|++|++||..+++.+ ..+..+ ..+..++|+|||+.+++++...  ..+++|+.+.+.....+..+.. +
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~-~~~~~~-~~~~~l~~~~dg~~l~~~~~~~--~~v~~~d~~~~~~~~~~~~~~~-~   75 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVT-RTFPVG-QRPRGITLSKDGKLLYVCASDS--DTIQVIDLATGEVIGTLPSGPD-P   75 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceE-EEEECC-CCCCceEECCCCCEEEEEECCC--CeEEEEECCCCcEEEeccCCCC-c
Confidence            467889999999999999887643 344443 3467899999999886655332  2455666666666665655443 4


Q ss_pred             EEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccccccC
Q 007283          149 LSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK-KGIIYDGKTADKIGELS  227 (609)
Q Consensus       149 ~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~-~i~iwd~~~~~~~~~~~  227 (609)
                      ..++|+|++..++++++.++.+.+||..+.+....+.. ...+.+++|+|+|+++++++.++ .+.+||..+++......
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~  154 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL  154 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE
Confidence            67899999987677778889999999887766555542 23467899999999999888775 46677987776554331


Q ss_pred             cCCCCccceEEEEECCCCCeEEEE-eCCCcEEEeecc
Q 007283          228 PEDGHKGSVYAVSWSPDGKQVLTA-SADKSAKVWDIS  263 (609)
Q Consensus       228 ~~~~h~~~V~~l~~spd~~~l~s~-s~d~~i~iwd~~  263 (609)
                          ......+++|+|++++|+.+ ..++.|++||+.
T Consensus       155 ----~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~  187 (300)
T TIGR03866       155 ----VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVA  187 (300)
T ss_pred             ----cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcC
Confidence                12345789999999988544 468999999986

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=3e-20  Score=174.34  Aligned_cols=284  Identities=18%  Similarity=0.235  Sum_probs=208.7

Q ss_pred             cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCC--CCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED--GHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       185 ~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      -.|..-|..+.+|...+.+.||+. |.|+|||+.........+...  .....|.++.++|||+.|++|+.-.++.|||+
T Consensus       416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDL  494 (705)
T KOG0639|consen  416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDL  494 (705)
T ss_pred             hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeec
Confidence            357788889999999888888764 679999986543222221111  23457899999999999999999999999998


Q ss_pred             ccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEE
Q 007283          263 SEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS  342 (609)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t  342 (609)
                      ... ..+++..+..                                              ..-..++++.+ .+.++..+
T Consensus       495 Aap-Tprikaelts----------------------------------------------sapaCyALa~s-pDakvcFs  526 (705)
T KOG0639|consen  495 AAP-TPRIKAELTS----------------------------------------------SAPACYALAIS-PDAKVCFS  526 (705)
T ss_pred             cCC-CcchhhhcCC----------------------------------------------cchhhhhhhcC-Cccceeee
Confidence            642 1122211111                                              11123344443 35578999


Q ss_pred             EecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCc
Q 007283          343 SSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE  422 (609)
Q Consensus       343 ~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (609)
                      |..||.|++||+.+...                                                               
T Consensus       527 ccsdGnI~vwDLhnq~~---------------------------------------------------------------  543 (705)
T KOG0639|consen  527 CCSDGNIAVWDLHNQTL---------------------------------------------------------------  543 (705)
T ss_pred             eccCCcEEEEEccccee---------------------------------------------------------------
Confidence            99999999998643110                                                               


Q ss_pred             EEEEEecccEEEeeCCeeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC
Q 007283          423 LVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP  501 (609)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~  501 (609)
                                        ++.+ .+.....|+.+++||..|-+|+-|.+||.||++.+...   ....+...|.++.++|
T Consensus       544 ------------------VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql---qqhdF~SQIfSLg~cP  602 (705)
T KOG0639|consen  544 ------------------VRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL---QQHDFSSQIFSLGYCP  602 (705)
T ss_pred             ------------------eecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh---hhhhhhhhheecccCC
Confidence                              0000 02234788999999999999999999999999766431   1123467899999999


Q ss_pred             CCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCe
Q 007283          502 DVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGV  581 (609)
Q Consensus       502 ~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v  581 (609)
                      ++..++.|-.++.+-+......+.  -.+..|..-|.++.|++-|+|+++-+.|+.+-.|...-+. .+..  .-.+..|
T Consensus       603 ~~dWlavGMens~vevlh~skp~k--yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGa-siFq--skE~SsV  677 (705)
T KOG0639|consen  603 TGDWLAVGMENSNVEVLHTSKPEK--YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA-SIFQ--SKESSSV  677 (705)
T ss_pred             CccceeeecccCcEEEEecCCccc--eeecccccEEEEEEecccCceeeecCchhhhhhccCcccc-ceee--ccccCcc
Confidence            999999999999988887554432  2356788999999999999999999999999999876433 2222  2357789


Q ss_pred             EEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          582 YGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       582 ~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      .++..| |+++|+|||.|+..-|+.+
T Consensus       678 lsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  678 LSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eeeeeccCceEEEecCCCcceEEEEE
Confidence            999999 8999999999999888876

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.86  E-value=5e-20  Score=164.24  Aligned_cols=330  Identities=20%  Similarity=0.274  Sum_probs=213.7

Q ss_pred             eecccceeEEEECC-----CCCEEEEEECCCCcceEEEEEcCCCC---eeEEE--ecCCccEEEEEEee---CCCeEEEE
Q 007283           97 RVLSGRIDDLQWSP-----DGLRIVACGDGKGKSLVRAFMWDSGT---NVGEF--DGHSRRVLSCAFKP---SRPFRIAT  163 (609)
Q Consensus        97 ~~~~~~v~~~~~sp-----dg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~h~~~v~~~~~~p---~~~~~i~t  163 (609)
                      ..|+.+|..++|.+     +-+.++++|.+    .+.++......   .+..+  ..|....+.|+|.-   ++...+|.
T Consensus        35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~----rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGN----RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ccCCCccceeeeehhcCCCCCceEEEeCCc----EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            34567788888875     12345555432    23333333221   22222  24666788888863   33446888


Q ss_pred             ecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEEC
Q 007283          164 CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS  242 (609)
Q Consensus       164 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s  242 (609)
                      +|.-|.|++-|....++...+.+|...|+.+.|.|+. +++++||.|..+++|++++..++..+.-..||.+.|.++.|+
T Consensus       111 ~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~  190 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFS  190 (385)
T ss_pred             ecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEc
Confidence            8899999999999999999999999999999999985 588999999999999999999988887778999999999999


Q ss_pred             CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCc--eee
Q 007283          243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSP--LQL  320 (609)
Q Consensus       243 pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~--~~~  320 (609)
                      ++|.+|+++|.|.++++|+++.+.   ....+...         ..  +        +.+++.+-+-.. ....+  .+.
T Consensus       191 ~~gd~i~ScGmDhslk~W~l~~~~---f~~~lE~s---------~~--~--------~~~~t~~pfpt~-~~~fp~fst~  247 (385)
T KOG1034|consen  191 LDGDRIASCGMDHSLKLWRLNVKE---FKNKLELS---------IT--Y--------SPNKTTRPFPTP-KTHFPDFSTT  247 (385)
T ss_pred             CCCCeeeccCCcceEEEEecChhH---Hhhhhhhh---------cc--c--------CCCCccCcCCcc-cccccccccc
Confidence            999999999999999999986321   11100000         00  0        000110000000 00000  022


Q ss_pred             eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC-CcEEEEeccceEEEEeccCCcc
Q 007283          321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE-EEIVTSGFDNKIWRVSLQGDQC  399 (609)
Q Consensus       321 ~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~~~~~~~~~~  399 (609)
                      .-|...|.|+.|..   .++++-|-++.|..|..+.-         .+.+..+...+ ...+       +..++.+    
T Consensus       248 diHrnyVDCvrw~g---d~ilSkscenaI~~w~pgkl---------~e~~~~vkp~es~~Ti-------~~~~~~~----  304 (385)
T KOG1034|consen  248 DIHRNYVDCVRWFG---DFILSKSCENAIVCWKPGKL---------EESIHNVKPPESATTI-------LGEFDYP----  304 (385)
T ss_pred             ccccchHHHHHHHh---hheeecccCceEEEEecchh---------hhhhhccCCCccceee-------eeEeccC----
Confidence            34888888888763   68899999999999965310         00000000000 0000       0000000    


Q ss_pred             ccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCC
Q 007283          400 GYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD  479 (609)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~  479 (609)
                                                                   .+.-...-.++.|-++.||.|.+.|.|++||++..
T Consensus       305 ---------------------------------------------~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  305 ---------------------------------------------MCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             ---------------------------------------------ccceEEEEEeecHHHHHHhhccCCCcEEEEECCCC
Confidence                                                         00011223467888999999999999999999765


Q ss_pred             eeeeeEEEe--cCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283          480 TLTEEAVLE--KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV  521 (609)
Q Consensus       480 ~~~~~~~~~--~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~  521 (609)
                      ......++.  .-...|...+||.||.+++....|++|--||..
T Consensus       340 ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  340 EPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             CCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            432112222  224568899999999999999999999999853

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.86  E-value=3.5e-20  Score=168.11  Aligned_cols=209  Identities=21%  Similarity=0.291  Sum_probs=155.4

Q ss_pred             cccCCCCcEEEEECCCC--CEEEEEeCCCcEEEEcCCCC-------c--------eeeEEEeecccceeEEEECCCCC-E
Q 007283           53 YGEHAYPATVARFSPNG--EWIASADVSGTVRIWGAHND-------H--------VLKKEFRVLSGRIDDLQWSPDGL-R  114 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g--~~las~~~d~~i~vWd~~~~-------~--------~~~~~~~~~~~~v~~~~~spdg~-~  114 (609)
                      .-+|.+.++.++.+|-|  .+.|+-+..|.|+||++...       +        ....++..|.+.-++++|||-.. +
T Consensus       147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~  226 (440)
T KOG0302|consen  147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGR  226 (440)
T ss_pred             ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccc
Confidence            34788899999998866  45667777899999987531       1        11234556777779999999321 3


Q ss_pred             EEEEECCCCcceEEEEEcCCCCe---eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC--ceeeeccCccc
Q 007283          115 IVACGDGKGKSLVRAFMWDSGTN---VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF--KFKLSHRGHSN  189 (609)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~--~~~~~~~~h~~  189 (609)
                      |++ ||-  ...+++|....+.-   ..-|.+|+..|..+.|+|....+|++|+-|+.|++||.+.+  +.....+.|..
T Consensus       227 Lls-GDc--~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~s  303 (440)
T KOG0302|consen  227 LLS-GDC--VKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNS  303 (440)
T ss_pred             ccc-Ccc--ccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCC
Confidence            443 322  22344444444321   22356899999999999999889999999999999998765  22233478999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeeccc
Q 007283          190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~  264 (609)
                      .|+.+.|+.+-.+||+|++||++.|||++.-+.-..+...+-|+.+|+++.|+|. ...|+++|.|.+|.+||+..
T Consensus       304 DVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsv  379 (440)
T KOG0302|consen  304 DVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSV  379 (440)
T ss_pred             ceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeec
Confidence            9999999999889999999999999998765433222233569999999999995 45788888999999999864

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.86  E-value=1.3e-21  Score=191.33  Aligned_cols=218  Identities=19%  Similarity=0.299  Sum_probs=186.3

Q ss_pred             CeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEE
Q 007283           29 NSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQ  107 (609)
Q Consensus        29 ~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~  107 (609)
                      ..++.++ ...+.+|....+.....|.+|..+|.++.|+++..+|++|+.+|+||+||++..+.+ +++.+|..++..+.
T Consensus        41 r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v-rtLtgh~~~~~sv~  119 (825)
T KOG0267|consen   41 RSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV-RTLTGHLLNITSVD  119 (825)
T ss_pred             eeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh-hhhhccccCcceee
Confidence            3444432 367779999888877778999999999999999999999999999999999988754 47889999999999


Q ss_pred             ECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCc
Q 007283          108 WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGH  187 (609)
Q Consensus       108 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h  187 (609)
                      |+|-|.+.+..+.+.   .+.+|+-....+.+.+++|...|..+.|+|+|.+ ++.|+.|..+++||...++....|.+|
T Consensus       120 f~P~~~~~a~gStdt---d~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~-v~~g~ed~tvki~d~~agk~~~ef~~~  195 (825)
T KOG0267|consen  120 FHPYGEFFASGSTDT---DLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRW-VASGGEDNTVKIWDLTAGKLSKEFKSH  195 (825)
T ss_pred             eccceEEeccccccc---cceehhhhccCceeeecCCcceeEEEeecCCCce-eeccCCcceeeeecccccccccccccc
Confidence            999998885433322   2445555556788999999999999999999986 899999999999999999999999999


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283          188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD  254 (609)
Q Consensus       188 ~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d  254 (609)
                      ...+..+.|+|..-++++|+.|+++++||.++.+.+....   .....|.++.|.|+++.+++|-..
T Consensus       196 e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~---~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  196 EGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGK---PETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             cccccccccCchhhhhccCCCCceeeeeccceeEEeeccC---CccCCceeeeecCCceeeecCchh
Confidence            9999999999999999999999999999999888776654   346789999999999998888654

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1.6e-19  Score=173.13  Aligned_cols=320  Identities=17%  Similarity=0.226  Sum_probs=216.4

Q ss_pred             ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe-EEEEeCCCcE
Q 007283          179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ-VLTASADKSA  257 (609)
Q Consensus       179 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~-l~s~s~d~~i  257 (609)
                      .+...++||.+.|.|+...|.|.+|++|+.||+++||.+.++.++.++.    ..+.|.+++|+|.+.. ++.++.+..+
T Consensus       391 ~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~----~d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  391 RCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ----FDSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             eeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe----ecceeEEEEecCCCCceeEEEEecCce
Confidence            3445689999999999999999999999999999999999999998873    4568999999998763 3333344456


Q ss_pred             EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEE----EcCCcEEEEeCCC---CCCCceeeeCCCCCeEEE
Q 007283          258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV----SLGGTISIFSAND---LEKSPLQLSGHMKNVTAL  330 (609)
Q Consensus       258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~~~~~---~~~~~~~~~~h~~~v~~~  330 (609)
                      .|-+...+.  ++....+                 ...++.+    .-++.+..|.-..   ........-.|.+.|..+
T Consensus       467 ~ivnp~~G~--~~e~~~t-----------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~v  527 (733)
T KOG0650|consen  467 LIVNPIFGD--RLEVGPT-----------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQV  527 (733)
T ss_pred             EEeCccccc--hhhhcch-----------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCcccee
Confidence            666543210  0000000                 0000000    1123445554321   122223334578888888


Q ss_pred             EEecCCCCEEEEEecCC---cEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCcccccccccc
Q 007283          331 TVLNIDPKVILSSSYDG---LIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDI  407 (609)
Q Consensus       331 ~~~~~~~~~~~t~s~dg---~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  407 (609)
                      .++.. +.++++...|+   .|.+..+...                                                  
T Consensus       528 tWHrk-GDYlatV~~~~~~~~VliHQLSK~--------------------------------------------------  556 (733)
T KOG0650|consen  528 TWHRK-GDYLATVMPDSGNKSVLIHQLSKR--------------------------------------------------  556 (733)
T ss_pred             eeecC-CceEEEeccCCCcceEEEEecccc--------------------------------------------------
Confidence            88743 45666654432   1222211000                                                  


Q ss_pred             CCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEE
Q 007283          408 GSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL  487 (609)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~  487 (609)
                         .....+.                           ..+..+.++.|+|...+++++++ ..|||||+....+.  +.+
T Consensus       557 ---~sQ~PF~---------------------------kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelv--KkL  603 (733)
T KOG0650|consen  557 ---KSQSPFR---------------------------KSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELV--KKL  603 (733)
T ss_pred             ---cccCchh---------------------------hcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHH--HHH
Confidence               0000000                           01234677889999988888874 67999999765443  233


Q ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC-
Q 007283          488 EKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP-  566 (609)
Q Consensus       488 ~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~-  566 (609)
                      ......|..++.+|.|.-++.|+.|+.+..+|+.-.....+.+..|...+++|+|++.=.++++|+.||++.||.-.-. 
T Consensus       604 ~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~  683 (733)
T KOG0650|consen  604 LTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYN  683 (733)
T ss_pred             hcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeeh
Confidence            3445679999999999999999999999999987666667778899999999999999999999999999999863211 


Q ss_pred             ---CCcc---eeEeccccCC----eEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          567 ---ASSR---MTIKGAHLGG----VYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       567 ---~~~~---~~~~~~h~~~----v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                         +..+   +..+.||...    |..+.|. -..+|+|+|+|++|++|.
T Consensus       684 Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  684 DLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLFT  733 (733)
T ss_pred             hhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEeeC
Confidence               1111   3346688765    8888999 467899999999999994

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=9.8e-20  Score=169.87  Aligned_cols=224  Identities=19%  Similarity=0.222  Sum_probs=183.6

Q ss_pred             cCceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC------
Q 007283           16 RGRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHN------   88 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~------   88 (609)
                      -|...++..+|.|.+++.. -.+.+++|.+++++.+.++.+|=.+|+|+.|+-||.+|.||+.||.|.+|++.+      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            4667799999999998876 568999999999999999999999999999999999999999999999997642      


Q ss_pred             C-c-eeeEEEeecccceeEEEECCCC--CEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe
Q 007283           89 D-H-VLKKEFRVLSGRIDDLQWSPDG--LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC  164 (609)
Q Consensus        89 ~-~-~~~~~~~~~~~~v~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~  164 (609)
                      . . .-.+.|..|.-+|+.+...+.|  .+|++++.+.   .+++|+...+..+.++.- ...+.+++.+|-+. ++..|
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~---t~k~wdlS~g~LLlti~f-p~si~av~lDpae~-~~yiG  235 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDR---TIKLWDLSLGVLLLTITF-PSSIKAVALDPAER-VVYIG  235 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCc---eEEEEEeccceeeEEEec-CCcceeEEEccccc-EEEec
Confidence            1 1 1224677888899999888764  5888887655   688999988887776543 45788999999886 68899


Q ss_pred             cCCCeEEEEeCCC----------------CceeeeccCccc--ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283          165 GEDFLVNFYEGPP----------------FKFKLSHRGHSN--FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       165 ~~d~~i~~~~~~~----------------~~~~~~~~~h~~--~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      +.++.|.+.+...                ......+.||.+  +|+|++++-||..|++|+.||.++|||+.+.+++.++
T Consensus       236 t~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl  315 (476)
T KOG0646|consen  236 TEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTL  315 (476)
T ss_pred             CCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHH
Confidence            9999887765321                123345788988  9999999999999999999999999999999999887


Q ss_pred             CcCCCCccceEEEEECCCCCe
Q 007283          227 SPEDGHKGSVYAVSWSPDGKQ  247 (609)
Q Consensus       227 ~~~~~h~~~V~~l~~spd~~~  247 (609)
                      .   ...++|+.+.+.|-.+-
T Consensus       316 ~---~~kgpVtnL~i~~~~~~  333 (476)
T KOG0646|consen  316 Q---TSKGPVTNLQINPLERG  333 (476)
T ss_pred             h---hhccccceeEeeccccc
Confidence            4   25688999999765443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.85  E-value=1.8e-16  Score=163.31  Aligned_cols=376  Identities=28%  Similarity=0.443  Sum_probs=263.8

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecc-cceeEEEE-CCCCC-EEEEEECCCCcceEE
Q 007283           52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLS-GRIDDLQW-SPDGL-RIVACGDGKGKSLVR  128 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~-~~v~~~~~-spdg~-~l~~~~~~~~~~~~~  128 (609)
                      .+.+|...+..+.|.+++..++.++.|+.+.+|+..........+.... ..+..+.+ ++++. .++..+...  ..++
T Consensus        60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d--~~~~  137 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD--GTVK  137 (466)
T ss_pred             eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCC--ccEE
Confidence            4568899999999999999999999999999999887642223344433 36777777 88888 444433322  2456


Q ss_pred             EEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEecC-CCeEEEEeCCCCceeeeccCcccceEEEEEcCCCC-EEEE
Q 007283          129 AFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE-DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS-KFIS  205 (609)
Q Consensus       129 ~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~-d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s  205 (609)
                      +|+... ......+..|...|..++|+|++.. ++.++. |+.+++|+....+....+.+|...|.+++|+|++. .+++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  216 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSESVTSLAFSPDGKL-LASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS  216 (466)
T ss_pred             EEEecCCCeEEEEEecCcccEEEEEECCCCCE-EEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence            666665 5667788999999999999999984 666675 99999999988777788888999999999999998 5566


Q ss_pred             EeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccce
Q 007283          206 VSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDM  285 (609)
Q Consensus       206 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  285 (609)
                      ++.|+.+.+||...+..+..  ...+|...+ -..|+|++.++++++.|+.+++|+......  ..              
T Consensus       217 ~~~d~~i~~wd~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~--------------  277 (466)
T COG2319         217 GSSDGTIRLWDLSTGKLLRS--TLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS--LL--------------  277 (466)
T ss_pred             ecCCCcEEEEECCCCcEEee--ecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc--EE--------------
Confidence            68999999998886666552  123677665 448999998999999999999999763211  00              


Q ss_pred             EEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccc
Q 007283          286 LVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK  365 (609)
Q Consensus       286 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~  365 (609)
                                                      ..+.+|...+.++.+.+ .+..+++++.|+.+++|+..........  
T Consensus       278 --------------------------------~~~~~~~~~v~~~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~--  322 (466)
T COG2319         278 --------------------------------RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSL--  322 (466)
T ss_pred             --------------------------------EEEecCCccEEEEEECC-CCCEEEEeeCCCcEEEEEcCCCceEEEe--
Confidence                                            00124566777776655 3456666888888999954321100000  


Q ss_pred             cccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEec
Q 007283          366 ENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN  445 (609)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (609)
                                                 .                                                 ...
T Consensus       323 ---------------------------~-------------------------------------------------~~~  326 (466)
T COG2319         323 ---------------------------T-------------------------------------------------LKG  326 (466)
T ss_pred             ---------------------------e-------------------------------------------------ecc
Confidence                                       0                                                 000


Q ss_pred             cCCceeEEEEcCCCCEEEEE-eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEE-EeCCCeEEEEEccCC
Q 007283          446 LRFPVTASAIAPDGSEAIIG-SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS-GDVNREAIVWDRVSR  523 (609)
Q Consensus       446 ~~~~~~~~~~sp~g~~l~~g-s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s-~s~d~~v~iwd~~~~  523 (609)
                      +...+..+.+.|++..++.+ ..|+.+++|++....  ...... ....+..+.+++ ...+.. +..++.+.+|+....
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  402 (466)
T COG2319         327 HEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLE-GHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTG  402 (466)
T ss_pred             cCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc--eeEEec-CCceEEEEEECC-CCCEEEEecCCCceEEEecccC
Confidence            00124444553333455555 688999999987654  112222 222288999998 544444 689999999998766


Q ss_pred             ceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          524 EVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       524 ~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      ...... ..+...+....+++++..+++++.++++++|+...
T Consensus       403 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         403 SLLRNL-DGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             eeeeec-cCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            543322 22227899999999999999999999999999764

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=4.1e-19  Score=178.86  Aligned_cols=243  Identities=17%  Similarity=0.208  Sum_probs=193.8

Q ss_pred             cCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCC-ccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 007283           14 TERGRGILISGHPKSNSILYTN-GRSVIILDLSNP-LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV   91 (609)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~-~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~   91 (609)
                      .|.+--+.|.+.|+|+.|+.++ .+.|++|+.... .....+.-|...|.+++..  +.++++++.+++|.++.+...+.
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~   88 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEE   88 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCc
Confidence            4444457899999999887775 478899988665 4444454477778777664  44899999999999999887542


Q ss_pred             eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                       ...+.-+.-++..++|+.+|+++++.+|+.   .+++...+.......+.+|..+|.++.|+|.+.+ +|+..-||.++
T Consensus        89 -~~iL~Rftlp~r~~~v~g~g~~iaagsdD~---~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~f-LAvss~dG~v~  163 (933)
T KOG1274|consen   89 -DTILARFTLPIRDLAVSGSGKMIAAGSDDT---AVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNF-LAVSSCDGKVQ  163 (933)
T ss_pred             -cceeeeeeccceEEEEecCCcEEEeecCce---eEEEEeccccchheeecccCCceeeeeEcCCCCE-EEEEecCceEE
Confidence             111222344799999999999999988765   3566666777777889999999999999999985 99999999999


Q ss_pred             EEeCCCCceeeeccC--------cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283          172 FYEGPPFKFKLSHRG--------HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP  243 (609)
Q Consensus       172 ~~~~~~~~~~~~~~~--------h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp  243 (609)
                      +|+...+.+...+.+        ....+..++|+|+|..|+..+.|+.|.+|+...++....+... .+...+..+.|+|
T Consensus       164 iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~-~~ss~~~~~~wsP  242 (933)
T KOG1274|consen  164 IWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDK-LSSSKFSDLQWSP  242 (933)
T ss_pred             EEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccc-ccccceEEEEEcC
Confidence            999988776655433        1345678999999888999999999999999998887777643 3444599999999


Q ss_pred             CCCeEEEEeCCCcEEEeeccc
Q 007283          244 DGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       244 d~~~l~s~s~d~~i~iwd~~~  264 (609)
                      .|+|||+++.||.|.+||++.
T Consensus       243 nG~YiAAs~~~g~I~vWnv~t  263 (933)
T KOG1274|consen  243 NGKYIAASTLDGQILVWNVDT  263 (933)
T ss_pred             CCcEEeeeccCCcEEEEeccc
Confidence            999999999999999999873

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.85  E-value=6.1e-19  Score=177.58  Aligned_cols=243  Identities=17%  Similarity=0.287  Sum_probs=180.8

Q ss_pred             CCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccc-cccceeEeeeeCCcEEEEeccceEEEEeccCCccc
Q 007283          322 GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK-ENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG  400 (609)
Q Consensus       322 ~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  400 (609)
                      +|....+.+++.+ ++.++++|+.||.|++|.-+.......... ....+.+++.....+++++.++.+.++.+......
T Consensus        11 aht~G~t~i~~d~-~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~   89 (933)
T KOG1274|consen   11 AHTGGLTLICYDP-DGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEED   89 (933)
T ss_pred             hccCceEEEEEcC-CCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCcc
Confidence            5777777777754 456999999999999996544321111111 34456666667778888888888888876544310


Q ss_pred             cccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe
Q 007283          401 YANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT  480 (609)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~  480 (609)
                                                            ..+..  ...|+.+++++.+|+++|+||.|-.|++.++....
T Consensus        90 --------------------------------------~iL~R--ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s  129 (933)
T KOG1274|consen   90 --------------------------------------TILAR--FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS  129 (933)
T ss_pred             --------------------------------------ceeee--eeccceEEEEecCCcEEEeecCceeEEEEeccccc
Confidence                                                  01111  12578899999999999999999999999987654


Q ss_pred             eeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe--ee-----cCCCCceEEEEECCCCcEEEEEe
Q 007283          481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK--NM-----LYHTARINCLAWSPNNSMVATGS  553 (609)
Q Consensus       481 ~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~-----~~h~~~i~~l~~s~d~~~l~s~s  553 (609)
                      .  ..++.+|.++|.+|.|+|++.+||+.+.||.|++||+.++.....  .+     ..-+..++.++|+|++..|+...
T Consensus       130 ~--~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~  207 (933)
T KOG1274|consen  130 Q--EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP  207 (933)
T ss_pred             h--heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec
Confidence            3  578899999999999999999999999999999999887654211  00     11244578899999999899999


Q ss_pred             CCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          554 LDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       554 ~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      .|++|++|+...-..........|+..+..++|| .+.+|++++-||-|.|||++
T Consensus       208 ~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  208 VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVD  262 (933)
T ss_pred             cCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecc
Confidence            9999999987642211111122344559999999 68999999999999999986

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=4.7e-19  Score=164.82  Aligned_cols=297  Identities=15%  Similarity=0.185  Sum_probs=201.2

Q ss_pred             ccCcccceEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCc-cccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEE
Q 007283          184 HRGHSNFVNCVRFSPDGS--KFISVSSDKKGIIYDGKTAD-KIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKV  259 (609)
Q Consensus       184 ~~~h~~~v~~l~~s~dg~--~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~i  259 (609)
                      .+-+.+.|++++|+|...  ++|+|..-|.|-+||+.+.+ ....+.....|+++|.++.|+|.+ ..+++.|.||+||.
T Consensus       182 ~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~  261 (498)
T KOG4328|consen  182 AKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRL  261 (498)
T ss_pred             eEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeee
Confidence            445678899999999854  67888889999999985322 222222335799999999999954 58899999999999


Q ss_pred             eecccCCCCceEEEeccCCCCCccceEEEEEE--cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283          260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW--QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP  337 (609)
Q Consensus       260 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  337 (609)
                      -|++......+   +... ..  ......+.+  ....++.++.-|...+|+.+........+.-|...|..+++++..+
T Consensus       262 ~D~~~~i~e~v---~s~~-~d--~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p  335 (498)
T KOG4328|consen  262 QDFEGNISEEV---LSLD-TD--NIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCP  335 (498)
T ss_pred             eeecchhhHHH---hhcC-cc--ceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCc
Confidence            99864211111   1110 00  011112222  2446777888889999998876655556777999999999999889


Q ss_pred             CEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEee
Q 007283          338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVA  417 (609)
Q Consensus       338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (609)
                      .+++|+|.|++.++||...-.     . ..+                                                 
T Consensus       336 ~~laT~s~D~T~kIWD~R~l~-----~-K~s-------------------------------------------------  360 (498)
T KOG4328|consen  336 WFLATASLDQTAKIWDLRQLR-----G-KAS-------------------------------------------------  360 (498)
T ss_pred             hheeecccCcceeeeehhhhc-----C-CCC-------------------------------------------------
Confidence            999999999999999863210     0 000                                                 


Q ss_pred             ccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec--CCeeeeeEEEecCCC---
Q 007283          418 LHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR--GDTLTEEAVLEKHRG---  492 (609)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~--~~~~~~~~~~~~h~~---  492 (609)
                                           ..+..+.++..|.++.|||.+..+++-++|..|||||..  +.... ......|..   
T Consensus       361 ---------------------p~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~-p~~~I~Hn~~t~  418 (498)
T KOG4328|consen  361 ---------------------PFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE-PLGTIPHNNRTG  418 (498)
T ss_pred             ---------------------cceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCC-ccceeeccCccc
Confidence                                 012234455678999999999999999999999999973  01111 111112221   


Q ss_pred             -c--eEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEE-EECCCCc-EEEEEeCCCeEEEEEc
Q 007283          493 -A--VSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL-AWSPNNS-MVATGSLDTCVIIYEI  563 (609)
Q Consensus       493 -~--i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l-~~s~d~~-~l~s~s~D~~v~vw~~  563 (609)
                       .  ..-..|.|+..++++|-.-..|-|+|-..++........-...|.++ .|+|-+. ++|-++.-|.|.||.-
T Consensus       419 RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~  494 (498)
T KOG4328|consen  419 RWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTN  494 (498)
T ss_pred             ccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEec
Confidence             1  22346999999999999999999999665543222111122356665 8899877 6666677788888853

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=1.4e-15  Score=156.73  Aligned_cols=371  Identities=26%  Similarity=0.429  Sum_probs=260.2

Q ss_pred             cCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCc-cccccccCC-CCcEEEEE-CCCCC-EEEEEe-CCCcEEEEcCC
Q 007283           14 TERGRGILISGHPKSNSILYTN-GRSVIILDLSNPL-QVSIYGEHA-YPATVARF-SPNGE-WIASAD-VSGTVRIWGAH   87 (609)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~-~~~~~~~h~-~~v~~~~~-sp~g~-~las~~-~d~~i~vWd~~   87 (609)
                      .+......+.+.+.+..++... ...+.+|+...+. ....+.++. ..+..+.+ ++++. +++..+ .|+.+++|+..
T Consensus        63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  142 (466)
T COG2319          63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS  142 (466)
T ss_pred             eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEec
Confidence            3445556788888888777665 6899999998876 555565544 36777777 89998 555544 49999999997


Q ss_pred             CCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC
Q 007283           88 NDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED  167 (609)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d  167 (609)
                      ........+..|...|..++|+|+++.++..+.  ....+++|.......+..+.+|...|.+++|+|++...+++++.|
T Consensus       143 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  220 (466)
T COG2319         143 TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS--LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD  220 (466)
T ss_pred             CCCeEEEEEecCcccEEEEEECCCCCEEEecCC--CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence            622344567788999999999999997776642  223455666556677888889999999999999987556777999


Q ss_pred             CeEEEEeCCCCceee-eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ccccCcCCCCccceEEEEECCCC
Q 007283          168 FLVNFYEGPPFKFKL-SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK-IGELSPEDGHKGSVYAVSWSPDG  245 (609)
Q Consensus       168 ~~i~~~~~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~spd~  245 (609)
                      +.+.+|+...+.... .+.+|.... ...|+|++..+++++.|+.+++|+...... ...+   .+|...|.++.|.|++
T Consensus       221 ~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~  296 (466)
T COG2319         221 GTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL---SGHSSSVLSVAFSPDG  296 (466)
T ss_pred             CcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE---ecCCccEEEEEECCCC
Confidence            999999877666666 578888875 448999998889999999999999876654 3222   3688899999999999


Q ss_pred             CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCC
Q 007283          246 KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMK  325 (609)
Q Consensus       246 ~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~  325 (609)
                      ..+++++.|+.+++|+....   .......                                            ...|..
T Consensus       297 ~~~~~~~~d~~~~~~~~~~~---~~~~~~~--------------------------------------------~~~~~~  329 (466)
T COG2319         297 KLLASGSSDGTVRLWDLETG---KLLSSLT--------------------------------------------LKGHEG  329 (466)
T ss_pred             CEEEEeeCCCcEEEEEcCCC---ceEEEee--------------------------------------------ecccCC
Confidence            98888999988999976521   1111000                                            112444


Q ss_pred             CeEEEEEecCCCCEEEEE-ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccc
Q 007283          326 NVTALTVLNIDPKVILSS-SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANS  404 (609)
Q Consensus       326 ~v~~~~~~~~~~~~~~t~-s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~  404 (609)
                      .+..+.+ ..+...++.+ ..|+.+.+|+.....  .        .                   ..             
T Consensus       330 ~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~--~--------~-------------------~~-------------  366 (466)
T COG2319         330 PVSSLSF-SPDGSLLVSGGSDDGTIRLWDLRTGK--P--------L-------------------KT-------------  366 (466)
T ss_pred             ceEEEEE-CCCCCEEEEeecCCCcEEeeecCCCc--e--------e-------------------EE-------------
Confidence            5556666 3321334444 677888887543211  0        0                   00             


Q ss_pred             cccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEE-EeCCCcEEEEEecCCeeee
Q 007283          405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII-GSQDGKLRVYSIRGDTLTE  483 (609)
Q Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~-gs~dg~i~iw~~~~~~~~~  483 (609)
                                                             ......+..+.+++ ....+. +..++.+.+|+........
T Consensus       367 ---------------------------------------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (466)
T COG2319         367 ---------------------------------------LEGHSNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLR  406 (466)
T ss_pred             ---------------------------------------ecCCceEEEEEECC-CCCEEEEecCCCceEEEecccCeeee
Confidence                                                   00000033445555 333333 6889999999987655422


Q ss_pred             eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283          484 EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       484 ~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~  522 (609)
                        ....+...+....+++++..+++++.+.++++|+...
T Consensus       407 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         407 --NLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             --eccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence              2222227889999999999999999999999999765

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=3.7e-18  Score=151.49  Aligned_cols=279  Identities=18%  Similarity=0.215  Sum_probs=190.8

Q ss_pred             eeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283           19 GILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR   97 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~   97 (609)
                      ...+.|++-|.+|+.+ +.+.++|||+.+...-+.+.+|--+|++++|||||++|+|+|.|-.|++||+-.+.++. +++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~-rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLK-RIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCcee-EEE
Confidence            3488999999999765 56799999999988888899999999999999999999999999999999998877543 344


Q ss_pred             ecccceeEEEECCCCCEEEEEE-CCCCcceEEEEEcCCCCeeEEEe----cCCccEE-EEEEeeCCCeEEEEecCCCeEE
Q 007283           98 VLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGEFD----GHSRRVL-SCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        98 ~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~-~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                       ++.+|..+.|+|-.+..+.+. -...   -.+...+..... .+.    +..+.+. +..|++.|.+ |.+|...|.+.
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~s---p~vi~~s~~~h~-~Lp~d~d~dln~sas~~~fdr~g~y-IitGtsKGkll  178 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEES---PVVIDFSDPKHS-VLPKDDDGDLNSSASHGVFDRRGKY-IITGTSKGKLL  178 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCC---cEEEEecCCcee-eccCCCccccccccccccccCCCCE-EEEecCcceEE
Confidence             567899999999544333222 1111   112222221111 011    1111111 2247777775 89999999999


Q ss_pred             EEeCCCCceeeeccCcc-cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc-cCcCCCCc-------cceEEEEEC
Q 007283          172 FYEGPPFKFKLSHRGHS-NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE-LSPEDGHK-------GSVYAVSWS  242 (609)
Q Consensus       172 ~~~~~~~~~~~~~~~h~-~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~h~-------~~V~~l~~s  242 (609)
                      +++.++.+++..++--. ..|.++.|+..|++|+.-+.|..|+.|+.+.-..... ..+...|+       -.=.+++|+
T Consensus       179 v~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs  258 (405)
T KOG1273|consen  179 VYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS  258 (405)
T ss_pred             EEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec
Confidence            99999999888876555 7899999999999999999999999998652111000 00000111       123578999


Q ss_pred             CCCCeEEEEeC-CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE-EEEEcCCcEEEEeCC
Q 007283          243 PDGKQVLTASA-DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL-VIVSLGGTISIFSAN  311 (609)
Q Consensus       243 pd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~i~~~~~~  311 (609)
                      .+|.|++.++. ...++||.-.   .|.+++.+.....    +......|.+-.. +..-..|++++|...
T Consensus       259 ~dgeYv~a~s~~aHaLYIWE~~---~GsLVKILhG~kg----E~l~DV~whp~rp~i~si~sg~v~iw~~~  322 (405)
T KOG1273|consen  259 GDGEYVCAGSARAHALYIWEKS---IGSLVKILHGTKG----EELLDVNWHPVRPIIASIASGVVYIWAVV  322 (405)
T ss_pred             CCccEEEeccccceeEEEEecC---CcceeeeecCCch----hheeecccccceeeeeeccCCceEEEEee
Confidence            99999988764 4679999865   4666666643321    1223334443322 222267889999754

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.83  E-value=8.6e-19  Score=160.81  Aligned_cols=119  Identities=29%  Similarity=0.491  Sum_probs=96.5

Q ss_pred             CccEEEEEEeeCCCeEEEEecCCCeEEEEeCC---CC------ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP---PF------KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~---~~------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      ..+|.++.|+++...+++|||.|..|++|-..   +.      +....+.+|.+.|+++.|+|+|..||+|+++|.+.+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW   92 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW   92 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence            35789999999887679999999999999532   22      2334578899999999999999999999999999999


Q ss_pred             eCC--------C-----CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          216 DGK--------T-----ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       216 d~~--------~-----~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      -..        +     .+.........+|...|+.++|+||+.++++++.|..+++||+.
T Consensus        93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~  153 (434)
T KOG1009|consen   93 KQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVH  153 (434)
T ss_pred             EecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEec
Confidence            654        2     11111112235799999999999999999999999999999986

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.83  E-value=2e-18  Score=160.90  Aligned_cols=287  Identities=17%  Similarity=0.241  Sum_probs=192.7

Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeeccc
Q 007283          188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDG--KTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISE  264 (609)
Q Consensus       188 ~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~  264 (609)
                      .+.|+++.|+|....|++|+.|++++||.+  +....+..+..   -..+|.+++|+|+|. .+++++....++.||+..
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l---~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~  289 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL---EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLET  289 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee---ccCccceeeecCCCceEEEecccceEEEEeeccc
Confidence            357999999999999999999999999964  34444444421   246799999999999 899999999999999863


Q ss_pred             CCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCC-CCeEEEEEecCCCCEEEEE
Q 007283          265 DNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHM-KNVTALTVLNIDPKVILSS  343 (609)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~t~  343 (609)
                         .+..+...+.+                                            +. +.+-...++ .++++|+..
T Consensus       290 ---ak~~k~~~~~g--------------------------------------------~e~~~~e~FeVS-hd~~fia~~  321 (514)
T KOG2055|consen  290 ---AKVTKLKPPYG--------------------------------------------VEEKSMERFEVS-HDSNFIAIA  321 (514)
T ss_pred             ---cccccccCCCC--------------------------------------------cccchhheeEec-CCCCeEEEc
Confidence               22222111110                                            10 001111111 123467777


Q ss_pred             ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcE
Q 007283          344 SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL  423 (609)
Q Consensus       344 s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (609)
                      +..|-|.+-...++                                                                  
T Consensus       322 G~~G~I~lLhakT~------------------------------------------------------------------  335 (514)
T KOG2055|consen  322 GNNGHIHLLHAKTK------------------------------------------------------------------  335 (514)
T ss_pred             ccCceEEeehhhhh------------------------------------------------------------------
Confidence            76666654421110                                                                  


Q ss_pred             EEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC
Q 007283          424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV  503 (609)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~  503 (609)
                                     +.+..+.....+..++|+.|++.+++.+.+|.|.+||+....+....+-++-. .=++++.|+++
T Consensus       336 ---------------eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v-~gts~~~S~ng  399 (514)
T KOG2055|consen  336 ---------------ELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSV-HGTSLCISLNG  399 (514)
T ss_pred             ---------------hhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCcc-ceeeeeecCCC
Confidence                           11111112234677889999999999999999999999877554333322211 23567788999


Q ss_pred             CEEEEEeCCCeEEEEEccCCc-----eEEeeecCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEcCCCCCc-ceeEec
Q 007283          504 SMFASGDVNREAIVWDRVSRE-----VKLKNMLYHTARINCLAWSPNNSMVATGS--LDTCVIIYEIDKPASS-RMTIKG  575 (609)
Q Consensus       504 ~~l~s~s~d~~v~iwd~~~~~-----~~~~~~~~h~~~i~~l~~s~d~~~l~s~s--~D~~v~vw~~~~~~~~-~~~~~~  575 (609)
                      .+||+||..|-|-|||..+-.     .+++.+..-...|+.++|+||.+.||.+|  .+..+++=.++.-... -.....
T Consensus       400 ~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n  479 (514)
T KOG2055|consen  400 SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN  479 (514)
T ss_pred             ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence            999999999999999954321     12333444566899999999999998776  4567888777542100 011123


Q ss_pred             cccCCeEEEEEcC-CCeEEEEeCCCcEEEEEcc
Q 007283          576 AHLGGVYGLAFTD-EHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       576 ~h~~~v~~~~~s~-~~~l~s~s~D~~i~~W~~~  607 (609)
                      ...+.|+|++||+ +.+|+-|-.+|.+.+|.|.
T Consensus       480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            4556799999995 7788889999999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.83  E-value=3.9e-19  Score=166.88  Aligned_cols=277  Identities=17%  Similarity=0.222  Sum_probs=202.3

Q ss_pred             cCceeEEeecCCCCeEEEeCC-CEEEEEeCCCCcc---cccccc--CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283           16 RGRGILISGHPKSNSILYTNG-RSVIILDLSNPLQ---VSIYGE--HAYPATVARFSPNGEWIASADVSGTVRIWGAHND   89 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~---~~~~~~--h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~   89 (609)
                      ...+++++.+..-. -||+.| +.|.|||+..+.-   +..+.-  -..-|..+.++|||+.|++|+.-.++-|||+...
T Consensus       419 GEvVcAvtIS~~tr-hVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAap  497 (705)
T KOG0639|consen  419 GEVVCAVTISNPTR-HVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAP  497 (705)
T ss_pred             CcEEEEEEecCCcc-eeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCC
Confidence            44556777765544 556655 7999999976431   222221  2335889999999999999999999999999865


Q ss_pred             c-eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC
Q 007283           90 H-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF  168 (609)
Q Consensus        90 ~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~  168 (609)
                      . .++.+++...-.+++++.|||.+..+++..+.   .+++|+......+..|.||++.+.++.++++|. .|=|||-|.
T Consensus       498 TprikaeltssapaCyALa~spDakvcFsccsdG---nI~vwDLhnq~~VrqfqGhtDGascIdis~dGt-klWTGGlDn  573 (705)
T KOG0639|consen  498 TPRIKAELTSSAPACYALAISPDAKVCFSCCSDG---NIAVWDLHNQTLVRQFQGHTDGASCIDISKDGT-KLWTGGLDN  573 (705)
T ss_pred             CcchhhhcCCcchhhhhhhcCCccceeeeeccCC---cEEEEEcccceeeecccCCCCCceeEEecCCCc-eeecCCCcc
Confidence            4 34455555556789999999999888765332   477888888888999999999999999999997 599999999


Q ss_pred             eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeE
Q 007283          169 LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV  248 (609)
Q Consensus       169 ~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  248 (609)
                      +++.||.+.++....+ .-..+|.++.++|++.+++.|=.++.+-+......++ ..+   .-|.+.|.++.|.+-|+++
T Consensus       574 tvRcWDlregrqlqqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-yql---hlheScVLSlKFa~cGkwf  648 (705)
T KOG0639|consen  574 TVRCWDLREGRQLQQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-YQL---HLHESCVLSLKFAYCGKWF  648 (705)
T ss_pred             ceeehhhhhhhhhhhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-eee---cccccEEEEEEecccCcee
Confidence            9999998766443222 1246799999999999999999999988876554433 222   2588999999999999999


Q ss_pred             EEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          249 LTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       249 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      ++.+.|.-+..|...-   +..+  +...+.  .....+.+..++.++++++.+....+|.
T Consensus       649 vStGkDnlLnawrtPy---Gasi--FqskE~--SsVlsCDIS~ddkyIVTGSGdkkATVYe  702 (705)
T KOG0639|consen  649 VSTGKDNLLNAWRTPY---GASI--FQSKES--SSVLSCDISFDDKYIVTGSGDKKATVYE  702 (705)
T ss_pred             eecCchhhhhhccCcc---ccce--eecccc--CcceeeeeccCceEEEecCCCcceEEEE
Confidence            9999999999997642   2111  111111  1112222344577888888876666664

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.83  E-value=6.7e-19  Score=165.17  Aligned_cols=287  Identities=15%  Similarity=0.172  Sum_probs=201.2

Q ss_pred             EEEEEcCCCCeeEEEecCCc--cEEEEEEeeCCCeEEEEecCCCeEEEEe--CCCCceeeeccCcccceEEEEEcCCCCE
Q 007283          127 VRAFMWDSGTNVGEFDGHSR--RVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKLSHRGHSNFVNCVRFSPDGSK  202 (609)
Q Consensus       127 ~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~  202 (609)
                      +++|+...-.....+..|+.  .+.++.|......+.++-+.|..+.+|.  .++++....-+...+.-.|++......+
T Consensus        14 ~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y   93 (673)
T KOG4378|consen   14 TKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLY   93 (673)
T ss_pred             eEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhccee
Confidence            45666554333333444432  3778888776655667778899999995  3333332221222234566666666689


Q ss_pred             EEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCc
Q 007283          203 FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV  282 (609)
Q Consensus       203 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  282 (609)
                      +++|+..+.|+|||.+..-+...+   ++|...|+++.+.-...|||+++..|.|.+-.+..+   ....++... .+..
T Consensus        94 ~~sgG~~~~Vkiwdl~~kl~hr~l---kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---~~tt~f~~~-sgqs  166 (673)
T KOG4378|consen   94 EISGGQSGCVKIWDLRAKLIHRFL---KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---QKTTTFTID-SGQS  166 (673)
T ss_pred             eeccCcCceeeehhhHHHHHhhhc---cCCcceeEEEEecCCcceeEEeccCCcEEEEecccC---ccccceecC-CCCe
Confidence            999999999999999854433333   589999999999999999999999999999987642   222222221 1111


Q ss_pred             cceEEEEE-EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccce
Q 007283          283 DDMLVGCL-WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK  361 (609)
Q Consensus       283 ~~~~~~~~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~  361 (609)
                      .. ..... +...+|.+++.+|.+.+|+.+.......-...|......++|++.++.++++.+.|..|.++|.....   
T Consensus       167 vR-ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~---  242 (673)
T KOG4378|consen  167 VR-LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQA---  242 (673)
T ss_pred             EE-EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccccc---
Confidence            10 11111 22446788899999999998876555555678999999999999888999999999999988653210   


Q ss_pred             eccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeee
Q 007283          362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVV  441 (609)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (609)
                                                                                                    ..
T Consensus       243 ------------------------------------------------------------------------------s~  244 (673)
T KOG4378|consen  243 ------------------------------------------------------------------------------ST  244 (673)
T ss_pred             ------------------------------------------------------------------------------cc
Confidence                                                                                          00


Q ss_pred             EEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC
Q 007283          442 STINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV  503 (609)
Q Consensus       442 ~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~  503 (609)
                      ..+....|.+.++|+|+|.+|++|+..|.|..||++... ....++..|...|++|+|-|.-
T Consensus       245 ~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k-~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  245 DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK-APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             ceeeecCCcceeeecCCceEEEeecCCceEEEEecccCC-CCceEeeecccceeEEEeeecc
Confidence            111223578899999999999999999999999997543 4567889999999999996653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.82  E-value=3.6e-18  Score=159.07  Aligned_cols=300  Identities=17%  Similarity=0.192  Sum_probs=193.1

Q ss_pred             CCccccccccCCCCcEEEEECCCC--CEEEEEeCCCcEEEEcCCCC---ceeeEEEeecccceeEEEECCC--CCEEEEE
Q 007283           46 NPLQVSIYGEHAYPATVARFSPNG--EWIASADVSGTVRIWGAHND---HVLKKEFRVLSGRIDDLQWSPD--GLRIVAC  118 (609)
Q Consensus        46 ~~~~~~~~~~h~~~v~~~~~sp~g--~~las~~~d~~i~vWd~~~~---~~~~~~~~~~~~~v~~~~~spd--g~~l~~~  118 (609)
                      +-.+...+.-|.+.|++++|+|.-  +++|+|+.-|+|-+|++.++   ..-...+..|+++|..+.|+|-  .+.+.+.
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS  254 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS  254 (498)
T ss_pred             cceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec
Confidence            333444566788999999999965  58889999999999999422   2222457789999999999995  3444444


Q ss_pred             ECCCCcceEEEEEcCCCC--eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce-eeeccCcccceEEEE
Q 007283          119 GDGKGKSLVRAFMWDSGT--NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF-KLSHRGHSNFVNCVR  195 (609)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~l~  195 (609)
                      -||    .+|+.+++.+.  .+...+.....+.+++|+...+. ++.+..-+...+||..+.+. ...+.-|...|.+++
T Consensus       255 yDG----tiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~-vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~  329 (498)
T KOG4328|consen  255 YDG----TIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRS-VLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVA  329 (498)
T ss_pred             cCc----eeeeeeecchhhHHHhhcCccceeeeeccccCCCcc-EEEeecccceEEEEeecCCccchhhhhhhcccceee
Confidence            444    47777777543  23334434555778888888776 44455555888999776554 334566888999999


Q ss_pred             EcCCCC-EEEEEeCCCcEEEEeCCCCccccc-cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc-CCCCceEE
Q 007283          196 FSPDGS-KFISVSSDKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE-DNHGKLKK  272 (609)
Q Consensus       196 ~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~-~~~~~~~~  272 (609)
                      ++|-.. +|||++.|++.+|||.+.-..... +...-.|...|.++.|||++-.|++-+.|.+||+||.+- ...-....
T Consensus       330 ~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~  409 (498)
T KOG4328|consen  330 LNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLG  409 (498)
T ss_pred             cCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccc
Confidence            999865 789999999999999775332221 111236999999999999988899999999999999731 00011111


Q ss_pred             EeccCCC--CCccceEEEEEEcC--CeEEEEEcCCcEEEEeCCCCCCCceeeeCCC-CCeEEE-EEecCCCCEEEEEecC
Q 007283          273 TLTPSGS--GGVDDMLVGCLWQN--DFLVIVSLGGTISIFSANDLEKSPLQLSGHM-KNVTAL-TVLNIDPKVILSSSYD  346 (609)
Q Consensus       273 ~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~-~~v~~~-~~~~~~~~~~~t~s~d  346 (609)
                      ++.+...  .+..  .+-+.|.+  .+++++..-..|-+++.+... ...++.+-. ..|.++ .+++....+++.++..
T Consensus       410 ~I~Hn~~t~RwlT--~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q-~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~  486 (498)
T KOG4328|consen  410 TIPHNNRTGRWLT--PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ-MVCELHDPESSTIPSVNEFHPMRDTLAAGGNSS  486 (498)
T ss_pred             eeeccCccccccc--chhheeCCCccEEEEeccCcceeEEcCCCCE-EeeeccCccccccccceeecccccceeccCCcc
Confidence            1111110  1111  12234543  466667667778888644221 112222211 134443 3445443466666678


Q ss_pred             CcEEEEe
Q 007283          347 GLIVKWI  353 (609)
Q Consensus       347 g~i~~W~  353 (609)
                      |.|.+|.
T Consensus       487 Gki~vft  493 (498)
T KOG4328|consen  487 GKIYVFT  493 (498)
T ss_pred             ceEEEEe
Confidence            8888883

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.81  E-value=2.5e-18  Score=166.77  Aligned_cols=276  Identities=19%  Similarity=0.326  Sum_probs=193.4

Q ss_pred             cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283          147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       147 ~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      -|..++|.|||...++.++  ..+.+||...+....++++|++.|+|++|+.||+.+|+|+.|+.+++|..+-...+ .+
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY   90 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY   90 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee
Confidence            6788999999987555443  35788999889999999999999999999999999999999999999986543322 22


Q ss_pred             CcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcC--CeEEEEEcCCc
Q 007283          227 SPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN--DFLVIVSLGGT  304 (609)
Q Consensus       227 ~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~  304 (609)
                          .|...|.|+.|.|-...|++++- ...-+|....++-.+.          .....+.+|.|.+  .+++.+-.+|+
T Consensus        91 ----SH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~----------kss~R~~~CsWtnDGqylalG~~nGT  155 (1081)
T KOG1538|consen   91 ----SHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH----------KSSSRIICCSWTNDGQYLALGMFNGT  155 (1081)
T ss_pred             ----ccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh----------hhheeEEEeeecCCCcEEEEeccCce
Confidence                59999999999999999999975 3567887653211111          1123467788974  48888999999


Q ss_pred             EEEEeCCCCCCCc-eeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEE
Q 007283          305 ISIFSANDLEKSP-LQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTS  383 (609)
Q Consensus       305 i~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (609)
                      |.+-+-...++.. ..-.|..++|.++++++..+     -+.+-.                               +...
T Consensus       156 IsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg-----~G~~di-------------------------------~aV~  199 (1081)
T KOG1538|consen  156 ISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSG-----EGRNDI-------------------------------LAVA  199 (1081)
T ss_pred             EEeecCCCCcceEEeCCCCCCCCceEEEecCCCC-----CCccce-------------------------------EEEE
Confidence            9998654333222 22345777888888875422     001111                               1111


Q ss_pred             eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEE
Q 007283          384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAI  463 (609)
Q Consensus       384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  463 (609)
                      .+..++-.+.+.+                                         .......+..+...|+...|+|.++.
T Consensus       200 DW~qTLSFy~LsG-----------------------------------------~~Igk~r~L~FdP~CisYf~NGEy~L  238 (1081)
T KOG1538|consen  200 DWGQTLSFYQLSG-----------------------------------------KQIGKDRALNFDPCCISYFTNGEYIL  238 (1081)
T ss_pred             eccceeEEEEecc-----------------------------------------eeecccccCCCCchhheeccCCcEEE
Confidence            1111111111110                                         00111223346677888999999999


Q ss_pred             EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283          464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDR  520 (609)
Q Consensus       464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~  520 (609)
                      .|+.|+.+++|.-++-.   ..++......|+.|+..|++++++.|+.||++-.|++
T Consensus       239 iGGsdk~L~~fTR~Gvr---LGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl  292 (1081)
T KOG1538|consen  239 LGGSDKQLSLFTRDGVR---LGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNL  292 (1081)
T ss_pred             EccCCCceEEEeecCeE---EeeccccceeEEEEEEccCCceEEEEEccCeeehhhh
Confidence            99999999999754322   2445556778999999999999999999999998874

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.81  E-value=3.5e-18  Score=155.22  Aligned_cols=265  Identities=20%  Similarity=0.273  Sum_probs=179.1

Q ss_pred             CCccceEEEEECCCC--CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEE
Q 007283          231 GHKGSVYAVSWSPDG--KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIF  308 (609)
Q Consensus       231 ~h~~~V~~l~~spd~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~  308 (609)
                      +|.+.++.+.-++-+  .+.++=+..|.|+||++..     ..+.+...                .+.+-          
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~-----~l~~l~~~----------------~~~~~----------  197 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAP-----HLNALSEP----------------GLEVK----------  197 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchh-----hhhhhcCc----------------ccccc----------
Confidence            577788888877765  4555557789999999852     11111100                00000          


Q ss_pred             eCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccce
Q 007283          309 SANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNK  388 (609)
Q Consensus       309 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  388 (609)
                        .....+...+.+|...-++++|++.....++||..-+.|++|...++.                              
T Consensus       198 --~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~------------------------------  245 (440)
T KOG0302|consen  198 --DSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGS------------------------------  245 (440)
T ss_pred             --ccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCc------------------------------
Confidence              011234566788999999999987554567788777888888443210                              


Q ss_pred             EEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCC-CEEEEEeC
Q 007283          389 IWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDG-SEAIIGSQ  467 (609)
Q Consensus       389 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g-~~l~~gs~  467 (609)
                         |.+..                                            .....+...|..+.+||.. ..||+||-
T Consensus       246 ---W~vd~--------------------------------------------~Pf~gH~~SVEDLqWSptE~~vfaScS~  278 (440)
T KOG0302|consen  246 ---WKVDQ--------------------------------------------RPFTGHTKSVEDLQWSPTEDGVFASCSC  278 (440)
T ss_pred             ---eeecC--------------------------------------------ccccccccchhhhccCCccCceEEeeec
Confidence               00000                                            0000112335667788844 56899999


Q ss_pred             CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc--eEEeeecCCCCceEEEEECCC
Q 007283          468 DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE--VKLKNMLYHTARINCLAWSPN  545 (609)
Q Consensus       468 dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~--~~~~~~~~h~~~i~~l~~s~d  545 (609)
                      ||+|+|||++.+....-...++|.+.|+.|+|+.+-.+||+|+.||+++|||++.-+  ..+..++.|..+|+++.|+|.
T Consensus       279 DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~  358 (440)
T KOG0302|consen  279 DGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPH  358 (440)
T ss_pred             CceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccc
Confidence            999999999887433333448999999999999999999999999999999986532  345567889999999999995


Q ss_pred             -CcEEEEEeCCCeEEEEEcCCCCC----------cc----eeEeccccC--CeEEEEEcC--CCeEEEEeCCCcEEEEE
Q 007283          546 -NSMVATGSLDTCVIIYEIDKPAS----------SR----MTIKGAHLG--GVYGLAFTD--EHSVVSSGEDACVRVWR  605 (609)
Q Consensus       546 -~~~l~s~s~D~~v~vw~~~~~~~----------~~----~~~~~~h~~--~v~~~~~s~--~~~l~s~s~D~~i~~W~  605 (609)
                       ...|++++.|.+|.+||+.....          .+    .+++--|.+  -|..|.|..  ..+|+|.+-||--.+..
T Consensus       359 e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGfnVfkt  437 (440)
T KOG0302|consen  359 EDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGFNVFKT  437 (440)
T ss_pred             cCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccceeEEEe
Confidence             46788899999999999864321          00    011223544  377888883  46899999998644433

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.81  E-value=8.6e-18  Score=153.62  Aligned_cols=214  Identities=21%  Similarity=0.320  Sum_probs=160.7

Q ss_pred             ccccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           50 VSIYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      .-...||+++|-.++|+| +...|||||.|.+|.||++..+. +.+.+   .                            
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~-l~~~l---t----------------------------  121 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENG-LTRDL---T----------------------------  121 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcc-cccCc---c----------------------------
Confidence            345689999999999999 66789999999999999987653 21111   1                            


Q ss_pred             EEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283          129 AFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                             ..+..+.+|+.+|-.++|||.-..+++++|.|.++.+|+..+++....+. |.+.|.++.|+.||++|++.+.
T Consensus       122 -------epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck  193 (472)
T KOG0303|consen  122 -------EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK  193 (472)
T ss_pred             -------cceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc
Confidence                   23346789999999999999998899999999999999999998887776 9999999999999999999999


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCcc-ceEEEEECCCCCeEEEEe---CCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKG-SVYAVSWSPDGKQVLTAS---ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD  284 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~-~V~~l~~spd~~~l~s~s---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  284 (609)
                      |+.|+|||.++++.+..-.   +|.+ .-..+.|-.+|..+-+|-   .++++-+||...-.......++...     ..
T Consensus       194 DKkvRv~dpr~~~~v~e~~---~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS-----nG  265 (472)
T KOG0303|consen  194 DKKVRVIDPRRGTVVSEGV---AHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTS-----NG  265 (472)
T ss_pred             cceeEEEcCCCCcEeeecc---cccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccC-----Cc
Confidence            9999999999998776542   4554 234566778888554442   3688999997543222222333211     11


Q ss_pred             eEEEEEEcCC---eEEEEEcCCcEEEEeCCC
Q 007283          285 MLVGCLWQND---FLVIVSLGGTISIFSAND  312 (609)
Q Consensus       285 ~~~~~~~~~~---~~~~~~~~g~i~~~~~~~  312 (609)
                       +.-.+++.+   .++++-.|++|+.|.+..
T Consensus       266 -vl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  266 -VLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             -eEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence             222334432   456778899999998754

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.2e-17  Score=148.35  Aligned_cols=282  Identities=16%  Similarity=0.263  Sum_probs=186.7

Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283           60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG  139 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (609)
                      ..|+.|++.|.+||.|..||.|-|||..+-. ..+.+..|-.+|.+++||+||+.|++.+.+.   -+..|+...+.+++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-iar~lsaH~~pi~sl~WS~dgr~LltsS~D~---si~lwDl~~gs~l~  101 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-IARMLSAHVRPITSLCWSRDGRKLLTSSRDW---SIKLWDLLKGSPLK  101 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccc-hhhhhhccccceeEEEecCCCCEeeeecCCc---eeEEEeccCCCcee
Confidence            7899999999999999999999999999865 3456888999999999999999999987443   35677777888777


Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee-ee--ccCc-ccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-LS--HRGH-SNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~-~~--~~~h-~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      .+. -..+|+.+.|+|-....++++--+..-.+-+..+.+.. ..  ..+. .....+..|.+.|+++++|...|.+.++
T Consensus       102 rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~  180 (405)
T KOG1273|consen  102 RIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVY  180 (405)
T ss_pred             EEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEE
Confidence            654 35689999999977655555433322222222111111 11  1111 1223445699999999999999999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccC----CCCceE--EEeccCCCCCccce-EEE
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISED----NHGKLK--KTLTPSGSGGVDDM-LVG  288 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~----~~~~~~--~~~~~~~~~~~~~~-~~~  288 (609)
                      +..+-+++..+...  ....|.++.|+..|+.|+.-+.|+.||.|+++.-    +.+..-  +.++    .-+... --.
T Consensus       181 ~a~t~e~vas~rit--s~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~q----DvVNk~~Wk~  254 (405)
T KOG1273|consen  181 DAETLECVASFRIT--SVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQ----DVVNKLQWKK  254 (405)
T ss_pred             ecchheeeeeeeec--hheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHH----HHHhhhhhhh
Confidence            99999888766532  2367899999999999999999999999997621    111110  0000    000000 012


Q ss_pred             EEEc--CCeEEEEEc-CCcEEEEeCCCCCCCceeeeCCC-CCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          289 CLWQ--NDFLVIVSL-GGTISIFSANDLEKSPLQLSGHM-KNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       289 ~~~~--~~~~~~~~~-~g~i~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                      |+++  +.+++.++. ...+++|.-.. ....+.+.|.. .....+.+++-. ..+++- ..|.+++|.+.
T Consensus       255 ccfs~dgeYv~a~s~~aHaLYIWE~~~-GsLVKILhG~kgE~l~DV~whp~r-p~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  255 CCFSGDGEYVCAGSARAHALYIWEKSI-GSLVKILHGTKGEELLDVNWHPVR-PIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             eeecCCccEEEeccccceeEEEEecCC-cceeeeecCCchhheeecccccce-eeeeec-cCCceEEEEee
Confidence            3333  334444432 34578886432 33445677766 455666666542 234444 88999999653

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=5.8e-20  Score=179.93  Aligned_cols=204  Identities=17%  Similarity=0.317  Sum_probs=179.6

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEE
Q 007283           52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM  131 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  131 (609)
                      .+..|...|.|+..-..++.+++|+.|-.+-||.+.....+ ..+.+|..+|.++.|+++...|++....   ..+++|+
T Consensus        23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i-~S~~~hespIeSl~f~~~E~Llaagsas---gtiK~wD   98 (825)
T KOG0267|consen   23 EFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAI-TSLTGHESPIESLTFDTSERLLAAGSAS---GTIKVWD   98 (825)
T ss_pred             hhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchh-heeeccCCcceeeecCcchhhhcccccC---Cceeeee
Confidence            45668888999998888999999999999999987543322 2478899999999999998666654432   3588888


Q ss_pred             cCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc
Q 007283          132 WDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK  211 (609)
Q Consensus       132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~  211 (609)
                      .+.++.+.++.+|...+.+++|+|-+.+ +|.|+.|.-+.+||....-+...+.+|...+.++.|+|+|++++.+++|.+
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P~~~~-~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHPYGEF-FASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT  177 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeeccceEE-eccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence            8888888899999999999999999986 699999999999999988888999999999999999999999999999999


Q ss_pred             EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ++|||...|+.+..+   .+|.+.|.++.|+|..-++++||.|+++++||++
T Consensus       178 vki~d~~agk~~~ef---~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dle  226 (825)
T KOG0267|consen  178 VKIWDLTAGKLSKEF---KSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLE  226 (825)
T ss_pred             eeeeccccccccccc---ccccccccccccCchhhhhccCCCCceeeeeccc
Confidence            999999999887766   4799999999999999999999999999999986

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.80  E-value=7.9e-17  Score=152.84  Aligned_cols=206  Identities=22%  Similarity=0.395  Sum_probs=158.4

Q ss_pred             eEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEEC
Q 007283           30 SILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWS  109 (609)
Q Consensus        30 ~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~s  109 (609)
                      .+++.++++..|.+.. ++.......|.+-|.|-+|+|||.-|+|++.||.|++|.-..  -++..+.....+|++++|.
T Consensus        78 ~~i~s~DGkf~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~W~  154 (737)
T KOG1524|consen   78 LLICSNDGRFVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCARWA  154 (737)
T ss_pred             EEEEcCCceEEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEEEC
Confidence            3455567777777653 344455788999999999999999999999999999997532  2333444566789999999


Q ss_pred             CCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCccc
Q 007283          110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSN  189 (609)
Q Consensus       110 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~  189 (609)
                      |+...++.|..+.    +.+..+..+..+..++.|.+-|.+++|+|... +|++||.|...++||.. +...++...|..
T Consensus       155 p~S~~vl~c~g~h----~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~-lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey  228 (737)
T KOG1524|consen  155 PNSNSIVFCQGGH----ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSN-IIASGGEDFRFKIWDAQ-GANLFTSAAEEY  228 (737)
T ss_pred             CCCCceEEecCCe----EEEeecccccceeEEeccCcEEEEeecCcccc-ceeecCCceeEEeeccc-CcccccCChhcc
Confidence            9988877775432    34555566666677899999999999999987 59999999999999964 334455567999


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283          190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW  260 (609)
Q Consensus       190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw  260 (609)
                      +|++++|+|| ..++.++.. +.+            +.  ....+.|..++|||||..++.|+..|.+.+=
T Consensus       229 ~ITSva~npd-~~~~v~S~n-t~R------------~~--~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  229 AITSVAFNPE-KDYLLWSYN-TAR------------FS--SPRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             ceeeeeeccc-cceeeeeee-eee------------ec--CCCccceEEEEEcCCCceeeccccCceEEEe
Confidence            9999999999 566666543 222            11  2346789999999999999999988887653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.79  E-value=2.1e-17  Score=155.25  Aligned_cols=294  Identities=15%  Similarity=0.132  Sum_probs=208.7

Q ss_pred             CCeEEEeCCCEEEEEeCCCCccccccccCC--CCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEeeccc-ce
Q 007283           28 SNSILYTNGRSVIILDLSNPLQVSIYGEHA--YPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSG-RI  103 (609)
Q Consensus        28 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~--~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~~~~-~v  103 (609)
                      .|..+...|..+.|||.+.......+..|.  -.+..+.|+....++ |+.+.|+.|++|.-..+......++...+ .-
T Consensus         3 eNl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~   82 (673)
T KOG4378|consen    3 ENLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNA   82 (673)
T ss_pred             cceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchH
Confidence            355666678899999998766555554443  238889998877543 45567889999975433111111111111 22


Q ss_pred             eEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee
Q 007283          104 DDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS  183 (609)
Q Consensus       104 ~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~  183 (609)
                      .|++......++++.|.+.   .+++|++....+...+++|...|+++.+...+.+ ||+++..|-|.+....+......
T Consensus        83 ~Cv~~~s~S~y~~sgG~~~---~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~Dey-iAsvs~gGdiiih~~~t~~~tt~  158 (673)
T KOG4378|consen   83 FCVACASQSLYEISGGQSG---CVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEY-IASVSDGGDIIIHGTKTKQKTTT  158 (673)
T ss_pred             HHHhhhhcceeeeccCcCc---eeeehhhHHHHHhhhccCCcceeEEEEecCCcce-eEEeccCCcEEEEecccCccccc
Confidence            3333333347888777654   5677777655556678999999999999988886 99999888899988777655555


Q ss_pred             ccCc-ccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEe
Q 007283          184 HRGH-SNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVW  260 (609)
Q Consensus       184 ~~~h-~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iw  260 (609)
                      |... .+.|..+.|+|..+ +|.+++++|.|.+||+.....+..+.  ..|+.+...++|+|.++ +|++.+.|..|.+|
T Consensus       159 f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~--~~HsAP~~gicfspsne~l~vsVG~Dkki~~y  236 (673)
T KOG4378|consen  159 FTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHAS--EAHSAPCRGICFSPSNEALLVSVGYDKKINIY  236 (673)
T ss_pred             eecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchh--hhccCCcCcceecCCccceEEEecccceEEEe
Confidence            5433 45567999999877 56788999999999998877766553  47999999999999765 78899999999999


Q ss_pred             ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec
Q 007283          261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN  334 (609)
Q Consensus       261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  334 (609)
                      |...   .+....+....+    ...+.+...+.+|+++...|.+..|+++....+...+..|...|++++|-.
T Consensus       237 D~~s---~~s~~~l~y~~P----lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~  303 (673)
T KOG4378|consen  237 DIRS---QASTDRLTYSHP----LSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQP  303 (673)
T ss_pred             eccc---ccccceeeecCC----cceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeee
Confidence            9873   333333322111    011222234568888889999999999988888888999999999999864

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.78  E-value=2.7e-14  Score=144.28  Aligned_cols=472  Identities=16%  Similarity=0.198  Sum_probs=277.4

Q ss_pred             cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCC---EEEEEECCCCcceEEE
Q 007283           53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL---RIVACGDGKGKSLVRA  129 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~---~l~~~~~~~~~~~~~~  129 (609)
                      ++|-...-....||+|++++.... +..|+|+...++.+. +.+..|..++..+.+-|...   ++.++....   .+++
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i-~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G---~I~v   86 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCT-GNFVKVYSTATGECI-TSLEDHTAPLTSVIVLPSSENANYLIVCSLDG---TIRV   86 (792)
T ss_pred             eccccceecccccccCCcEEEEee-CCEEEEEecchHhhh-hhcccccCccceeeecCCCccceEEEEEecCc---cEEE
Confidence            444444444567999999988664 568999999987754 36778888999998888654   333444322   4889


Q ss_pred             EEcCCCCeeEEEecCCccEEEEEEee---CCCeEEEEecCCCeE------------EEEeCCCCcee-e-eccCcccceE
Q 007283          130 FMWDSGTNVGEFDGHSRRVLSCAFKP---SRPFRIATCGEDFLV------------NFYEGPPFKFK-L-SHRGHSNFVN  192 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p---~~~~~i~t~~~d~~i------------~~~~~~~~~~~-~-~~~~h~~~v~  192 (609)
                      |+|..+..+.++..+.. +..+.+.|   +.+..+.....|..+            ..+...+.... . ...+|.. -.
T Consensus        87 wd~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~-~~  164 (792)
T KOG1963|consen   87 WDWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQE-PK  164 (792)
T ss_pred             ecCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcC-Cc
Confidence            99998888777764432 22222211   111111122222211            11111111100 0 0122322 35


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCccc-cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceE
Q 007283          193 CVRFSPDGSKFISVSSDKKGIIYDGKTADKI-GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLK  271 (609)
Q Consensus       193 ~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~  271 (609)
                      ++.+++.|.+.. ...+..+.+|...+.... ........|.-.+++.++||.+++++++-.||+|.+|.-..    .  
T Consensus       165 ~I~~~~~ge~~~-i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~----~--  237 (792)
T KOG1963|consen  165 SIVDNNSGEFKG-IVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFG----S--  237 (792)
T ss_pred             cEEEcCCceEEE-EEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccc----c--
Confidence            678888887544 445566778876654311 11111234777789999999999999999999999996221    0  


Q ss_pred             EEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEE
Q 007283          272 KTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVK  351 (609)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~  351 (609)
                           .   .                               .......+.=|...|.++.|+. ++..++||+..+.+.+
T Consensus       238 -----~---~-------------------------------~~~t~t~lHWH~~~V~~L~fS~-~G~~LlSGG~E~VLv~  277 (792)
T KOG1963|consen  238 -----S---D-------------------------------DSETCTLLHWHHDEVNSLSFSS-DGAYLLSGGREGVLVL  277 (792)
T ss_pred             -----c---c-------------------------------ccccceEEEecccccceeEEec-CCceEeecccceEEEE
Confidence                 0   0                               0001122333778899999874 5678999999999999


Q ss_pred             EecCccccceeccccccceeEeee--eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEec
Q 007283          352 WIQGIGYGGKLQRKENSQIKCFAA--IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTD  429 (609)
Q Consensus       352 W~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (609)
                      |..+++. .++..+-.+++..+..  +++.......|+.|..........  ...+.                       
T Consensus       278 Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~--k~tIs-----------------------  331 (792)
T KOG1963|consen  278 WQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEI--KSTIS-----------------------  331 (792)
T ss_pred             EeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhh--hhhcc-----------------------
Confidence            9887664 2333333445544443  233344455566666554322110  00000                       


Q ss_pred             ccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeee-EEEe--------cCCCceEEEEEC
Q 007283          430 SGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEE-AVLE--------KHRGAVSVIRYS  500 (609)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~-~~~~--------~h~~~i~~v~~s  500 (609)
                       |+.-. ... . ....+.-.+.++++|.-+.++..+..|.|.+||+.++....+ .+..        .+.-.|++++.+
T Consensus       332 -gi~~~-~~~-~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~  407 (792)
T KOG1963|consen  332 -GIKPP-TPS-T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARS  407 (792)
T ss_pred             -CccCC-Ccc-c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhh
Confidence             00000 000 0 000011245677888777788888999999999876543221 1111        123357888899


Q ss_pred             CCCCEEEEEe--------CC--CeEEEEEccCCce----EEeeecCCCCceEEEEECCC--CcEEEEEeCCCeEEEEEcC
Q 007283          501 PDVSMFASGD--------VN--REAIVWDRVSREV----KLKNMLYHTARINCLAWSPN--NSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       501 ~~~~~l~s~s--------~d--~~v~iwd~~~~~~----~~~~~~~h~~~i~~l~~s~d--~~~l~s~s~D~~v~vw~~~  564 (609)
                      .+|.++++.-        .|  -.+|+|-......    ..+....|...+.+.++.+.  ..+.+|++.||.+++|-+.
T Consensus       408 ~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~  487 (792)
T KOG1963|consen  408 RFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFT  487 (792)
T ss_pred             ccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEe
Confidence            9999999864        23  3467886544332    12233467776666666543  2278999999999999873


Q ss_pred             CCC-----C---cceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEEccC
Q 007283          565 KPA-----S---SRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       565 ~~~-----~---~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      ...     .   ....+..-|...+.++.|+-+..+++.|.|.+|.+|+.+.
T Consensus       488 ~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  488 DDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             cccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCC
Confidence            211     1   1122222367889999999444678899999999999764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=1.5e-17  Score=154.54  Aligned_cols=252  Identities=19%  Similarity=0.279  Sum_probs=175.4

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCcc
Q 007283           68 NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRR  147 (609)
Q Consensus        68 ~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  147 (609)
                      -|+|+|-|.+|..|.|||+.-.......+                  .+.....+..       -..++.-....+|++.
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~------------------~LGs~~sk~~-------~k~~k~~~~~~gHTda  245 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCV------------------TLGSKASKKK-------KKKGKRSNSASGHTDA  245 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccce------------------eechhhhhhh-------hhhcccccccccchHH
Confidence            37899999999999999986322111100                  0000000000       0011111123589999


Q ss_pred             EEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283          148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      |..++|...-..++|+||.|.++++||..++++...+..|...|.++.|+|. ...|++|+.|+++.+.|.+........
T Consensus       246 vl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~  325 (463)
T KOG0270|consen  246 VLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKE  325 (463)
T ss_pred             HHHHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCce
Confidence            9999999888889999999999999999999999999999999999999997 558999999999999998853222111


Q ss_pred             CcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcE
Q 007283          227 SPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI  305 (609)
Q Consensus       227 ~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  305 (609)
                         -...+.|-.++|.|... .++++..||+++-+|++..  +                                     
T Consensus       326 ---wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~--~-------------------------------------  363 (463)
T KOG0270|consen  326 ---WKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNP--G-------------------------------------  363 (463)
T ss_pred             ---EEeccceEEEEecCCCceeEEEecCCceEEeeecCCC--C-------------------------------------
Confidence               12457899999998765 5667778899999998631  1                                     


Q ss_pred             EEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc--ccccceeEeeeeCC---cE
Q 007283          306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR--KENSQIKCFAAIEE---EI  380 (609)
Q Consensus       306 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~---~~  380 (609)
                               .+..+++.|...|.+++++...+.+++|++.|+.+++|+...........  ..-....|++....   .+
T Consensus       364 ---------~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~l  434 (463)
T KOG0270|consen  364 ---------KPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTL  434 (463)
T ss_pred             ---------CceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEE
Confidence                     12245678999999999998888999999999999999876443322211  11223556665332   24


Q ss_pred             EEEeccceEEEEecc
Q 007283          381 VTSGFDNKIWRVSLQ  395 (609)
Q Consensus       381 ~~~~~d~~i~~~~~~  395 (609)
                      +.++..+.+++|++.
T Consensus       435 a~GG~k~~~~vwd~~  449 (463)
T KOG0270|consen  435 AFGGEKAVLRVWDIF  449 (463)
T ss_pred             EecCccceEEEeecc
Confidence            445555557777654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.78  E-value=1.8e-16  Score=145.77  Aligned_cols=159  Identities=22%  Similarity=0.342  Sum_probs=121.2

Q ss_pred             CCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCce--------eeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283           57 AYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHV--------LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV  127 (609)
Q Consensus        57 ~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~--------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  127 (609)
                      .++|..+.|.+++. .||||+.|..||||.+.....        ....+..|...|..+.|+|+|+.|++++        
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~--------   84 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGG--------   84 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecC--------
Confidence            35799999999887 999999999999998764321        1122334444555555555555555544        


Q ss_pred             EEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC----------------CCCceeeeccCcccce
Q 007283          128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG----------------PPFKFKLSHRGHSNFV  191 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~----------------~~~~~~~~~~~h~~~v  191 (609)
                                                            .++.+.+|-.                +.+.....+.+|...|
T Consensus        85 --------------------------------------D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~di  126 (434)
T KOG1009|consen   85 --------------------------------------DGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDI  126 (434)
T ss_pred             --------------------------------------CCceEEEEEecCcCCccccchhhhCccceEEEEEecccccch
Confidence                                                  4444444421                2244556678899999


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          192 NCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      ..++|+||+.++++++-|..+++||+..|.....+   .+|..-|..++|.|-++++++-+.|+..+.+.+..
T Consensus       127 ydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~---~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~  196 (434)
T KOG1009|consen  127 YDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAIL---DDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKL  196 (434)
T ss_pred             hhhhccCCCceeeeeeccceEEEEEeccceeEeec---cccccccceeecchhhhhhhhhccCcccceeeeee
Confidence            99999999999999999999999999999988766   47999999999999999999999999888887653

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.77  E-value=1.1e-16  Score=140.49  Aligned_cols=289  Identities=19%  Similarity=0.260  Sum_probs=190.9

Q ss_pred             CEEEEEeCCCC--cc-ccccccCCCCcEEEEECC-CCCEEEEEeCC-------CcEEEEcCCCCce--------eeEEEe
Q 007283           37 RSVIILDLSNP--LQ-VSIYGEHAYPATVARFSP-NGEWIASADVS-------GTVRIWGAHNDHV--------LKKEFR   97 (609)
Q Consensus        37 ~~~~i~~~~~~--~~-~~~~~~h~~~v~~~~~sp-~g~~las~~~d-------~~i~vWd~~~~~~--------~~~~~~   97 (609)
                      +.|.+.++..+  .. -..|..|.+.|..++-+| |.++|+|+-.+       ..+-||.++....        +...+.
T Consensus        40 NqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ld  119 (370)
T KOG1007|consen   40 NQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLD  119 (370)
T ss_pred             ceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCC
Confidence            56666555432  22 245677889999999999 45666765442       2468998874321        111222


Q ss_pred             -ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-eEEE-----ecCCccEEEEEEeeC-CCeEEEEecCCCe
Q 007283           98 -VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-VGEF-----DGHSRRVLSCAFKPS-RPFRIATCGEDFL  169 (609)
Q Consensus        98 -~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-----~~h~~~v~~~~~~p~-~~~~i~t~~~d~~  169 (609)
                       .+-+.|.++.|.|++..|++..+++    +.+|..+.... .+.+     .+|....++.+|+|. +...+++ -.|++
T Consensus       120 teavg~i~cvew~Pns~klasm~dn~----i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~t  194 (370)
T KOG1007|consen  120 TEAVGKINCVEWEPNSDKLASMDDNN----IVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDST  194 (370)
T ss_pred             HHHhCceeeEEEcCCCCeeEEeccCc----eEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCc
Confidence             3456899999999999999987654    45666665443 3333     246677889999993 2233444 45778


Q ss_pred             EEEEeCCCCceeeec-cCcccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CC
Q 007283          170 VNFYEGPPFKFKLSH-RGHSNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GK  246 (609)
Q Consensus       170 i~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~  246 (609)
                      +..||.++.+..... ..|...|..+.|+|+-+ .|++|++|+.++|||.+..+.  .+....+|+..|.++.|.|. .+
T Consensus       195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~--pv~el~~HsHWvW~VRfn~~hdq  272 (370)
T KOG1007|consen  195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF--PVQELPGHSHWVWAVRFNPEHDQ  272 (370)
T ss_pred             EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCc--cccccCCCceEEEEEEecCccce
Confidence            999998876554443 46888999999999976 789999999999999876542  22233589999999999996 46


Q ss_pred             eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCC
Q 007283          247 QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKN  326 (609)
Q Consensus       247 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~  326 (609)
                      +++++|.|..|.+|....-.....+.. ..........                 +..=+.--+  ..+....+..|...
T Consensus       273 LiLs~~SDs~V~Lsca~svSSE~qi~~-~~dese~e~~-----------------dseer~kpL--~dg~l~tydehEDS  332 (370)
T KOG1007|consen  273 LILSGGSDSAVNLSCASSVSSEQQIEF-EDDESESEDE-----------------DSEERVKPL--QDGQLETYDEHEDS  332 (370)
T ss_pred             EEEecCCCceeEEEecccccccccccc-ccccccCcch-----------------hhHHhcccc--cccccccccccccc
Confidence            889999999999998643222111110 0000000000                 000000000  01122345679999


Q ss_pred             eEEEEEecCCCCEEEEEecCCcEEEE
Q 007283          327 VTALTVLNIDPKVILSSSYDGLIVKW  352 (609)
Q Consensus       327 v~~~~~~~~~~~~~~t~s~dg~i~~W  352 (609)
                      |+++++++.+|.++++-|.||.+.+-
T Consensus       333 VY~~aWSsadPWiFASLSYDGRviIs  358 (370)
T KOG1007|consen  333 VYALAWSSADPWIFASLSYDGRVIIS  358 (370)
T ss_pred             eEEEeeccCCCeeEEEeccCceEEee
Confidence            99999999999999999999999875

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.76  E-value=2.6e-16  Score=140.80  Aligned_cols=295  Identities=19%  Similarity=0.265  Sum_probs=199.0

Q ss_pred             ccccCCCCcEEEEECC-----CCCEEEEEeCCCcEEEEcCCCCc--e-eeEEEe-ecccceeEEEECCC---CCEEEEEE
Q 007283           52 IYGEHAYPATVARFSP-----NGEWIASADVSGTVRIWGAHNDH--V-LKKEFR-VLSGRIDDLQWSPD---GLRIVACG  119 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp-----~g~~las~~~d~~i~vWd~~~~~--~-~~~~~~-~~~~~v~~~~~spd---g~~l~~~~  119 (609)
                      ..+.|+.+|..++|.+     +-+.+|+++ ...+.++....+.  . +..-.. .+.+....++|+=|   +.-+++++
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            4567888899999984     234556654 3467788776543  1 111111 24566788899875   34444444


Q ss_pred             CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec---cCcccceEEEEE
Q 007283          120 DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH---RGHSNFVNCVRF  196 (609)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~---~~h~~~v~~l~~  196 (609)
                      .  ...++|+.+..++.....+.+|...|..+.|+|+.+..+++++.|+.+++|++.+..++..+   .||.+.|.++.|
T Consensus       112 G--~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  112 G--YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             c--ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            3  35579999999998889999999999999999999999999999999999999999888775   579999999999


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCcccc------ccC-------------------cCCCCccceEEEEECCCCCeEEEE
Q 007283          197 SPDGSKFISVSSDKKGIIYDGKTADKIG------ELS-------------------PEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       197 s~dg~~l~s~~~d~~i~iwd~~~~~~~~------~~~-------------------~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                      +++|.+|++++.|..+++|+....+...      ++.                   ...-|...|-|+.|-  |.++++-
T Consensus       190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk  267 (385)
T KOG1034|consen  190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK  267 (385)
T ss_pred             cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence            9999999999999999999876322110      010                   112355566666663  6889999


Q ss_pred             eCCCcEEEeecccCCCCceEEEeccCCC------------CCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCc-e
Q 007283          252 SADKSAKVWDISEDNHGKLKKTLTPSGS------------GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSP-L  318 (609)
Q Consensus       252 s~d~~i~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~-~  318 (609)
                      |-++.|..|....  .+..+....+...            ..+-.+...+..-.++++++...|.+.+|+++..+... .
T Consensus       268 scenaI~~w~pgk--l~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t  345 (385)
T KOG1034|consen  268 SCENAIVCWKPGK--LEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT  345 (385)
T ss_pred             ccCceEEEEecch--hhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc
Confidence            9999999998621  0001000101000            00111122222236689999999999999987554322 1


Q ss_pred             eee--CCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283          319 QLS--GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       319 ~~~--~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~  354 (609)
                      ++.  -....|...+|+ .++.+++....|++|-.|+.
T Consensus       346 tl~~s~~~~tVRQ~sfS-~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  346 TLTHSKSGSTVRQTSFS-RDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             eEEeccccceeeeeeec-ccCcEEEEEeCCCcEEEEEe
Confidence            222  122345555554 34567777778888877753

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.75  E-value=2.6e-17  Score=170.26  Aligned_cols=250  Identities=19%  Similarity=0.326  Sum_probs=182.3

Q ss_pred             cceEEEEEcCCCCE----EEEEeCCCcEEEEeCCC---CccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEe
Q 007283          189 NFVNCVRFSPDGSK----FISVSSDKKGIIYDGKT---ADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVW  260 (609)
Q Consensus       189 ~~v~~l~~s~dg~~----l~s~~~d~~i~iwd~~~---~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iw  260 (609)
                      ...+.|+|.+.|..    ||.|.+||.|.+||...   +.....+.....|++.|..+.|.+.+. +||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            35688999988775    88899999999999765   232223333357999999999999876 99999999999999


Q ss_pred             ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283          261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI  340 (609)
Q Consensus       261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  340 (609)
                      |+....     ..+...                                          -..-...|.+++|......++
T Consensus       145 Dlnn~~-----tP~~~~------------------------------------------~~~~~~eI~~lsWNrkvqhIL  177 (1049)
T KOG0307|consen  145 DLNKPE-----TPFTPG------------------------------------------SQAPPSEIKCLSWNRKVSHIL  177 (1049)
T ss_pred             ccCCcC-----CCCCCC------------------------------------------CCCCcccceEeccchhhhHHh
Confidence            986311     001000                                          001235677788775556789


Q ss_pred             EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283          341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY  420 (609)
Q Consensus       341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (609)
                      ++++.+|.+.+||+....          ++..++.                                           . 
T Consensus       178 AS~s~sg~~~iWDlr~~~----------pii~ls~-------------------------------------------~-  203 (1049)
T KOG0307|consen  178 ASGSPSGRAVIWDLRKKK----------PIIKLSD-------------------------------------------T-  203 (1049)
T ss_pred             hccCCCCCceeccccCCC----------ccccccc-------------------------------------------C-
Confidence            999999999999875321          1100000                                           0 


Q ss_pred             CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC-EEEEEeCCC---cEEEEEecCCeeeeeEEEecCCCceEE
Q 007283          421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS-EAIIGSQDG---KLRVYSIRGDTLTEEAVLEKHRGAVSV  496 (609)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~~gs~dg---~i~iw~~~~~~~~~~~~~~~h~~~i~~  496 (609)
                                              ..+..++.++++|++. .+++++.|.   .|.+||++.-. ...+++++|...|.+
T Consensus       204 ------------------------~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-sP~k~~~~H~~Gils  258 (1049)
T KOG0307|consen  204 ------------------------PGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-SPLKILEGHQRGILS  258 (1049)
T ss_pred             ------------------------CCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-Cchhhhcccccceee
Confidence                                    0001256788899775 466666654   68999986433 335677899999999


Q ss_pred             EEECCCC-CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEcCC
Q 007283          497 IRYSPDV-SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       497 v~~s~~~-~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~s~D~~v~vw~~~~  565 (609)
                      ++|++.+ .+++|++.|+.+.+|+.++++.. ..+......+..+.|.|..- .++.++.||.|.|+.+..
T Consensus       259 lsWc~~D~~lllSsgkD~~ii~wN~~tgEvl-~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~  328 (1049)
T KOG0307|consen  259 LSWCPQDPRLLLSSGKDNRIICWNPNTGEVL-GELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQG  328 (1049)
T ss_pred             eccCCCCchhhhcccCCCCeeEecCCCceEe-eecCCCCcceeeeeecCCCcchhhhheeccceeeeeeec
Confidence            9999887 89999999999999999887753 34455667899999999775 889999999999999853

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.75  E-value=1.2e-16  Score=148.50  Aligned_cols=231  Identities=20%  Similarity=0.261  Sum_probs=165.1

Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCC--Ccee------------------eeCCCCCeEEEEEecCCCCEEEEEecCCcEEEE
Q 007283          293 NDFLVIVSLGGTISIFSANDLEK--SPLQ------------------LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW  352 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~--~~~~------------------~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W  352 (609)
                      ++++++|+.+..|.||+++-...  +..+                  ..+|+..|..+.+...-.+++++||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            56899999999999998752211  1111                  237888888888875556899999999999999


Q ss_pred             ecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccE
Q 007283          353 IQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGV  432 (609)
Q Consensus       353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  432 (609)
                      ++..+.......                                                                    
T Consensus       272 D~~~g~p~~s~~--------------------------------------------------------------------  283 (463)
T KOG0270|consen  272 DVDTGKPKSSIT--------------------------------------------------------------------  283 (463)
T ss_pred             EcCCCCcceehh--------------------------------------------------------------------
Confidence            987653211100                                                                    


Q ss_pred             EEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCC-EEEEEe
Q 007283          433 VLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVS-MFASGD  510 (609)
Q Consensus       433 ~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~-~l~s~s  510 (609)
                                  .+..+|.++.++| ....+++|+.|+++++.|.+.....  ...=...+.|-.++|.|... .+.++.
T Consensus       284 ------------~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s--~~~wk~~g~VEkv~w~~~se~~f~~~t  349 (463)
T KOG0270|consen  284 ------------HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNS--GKEWKFDGEVEKVAWDPHSENSFFVST  349 (463)
T ss_pred             ------------hcCCceeEEEecCCCceEEEeccccceEEeeeccCcccc--CceEEeccceEEEEecCCCceeEEEec
Confidence                        0123477778877 4567999999999999998742211  11112467899999988864 566777


Q ss_pred             CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEcCCCCCcceeEecccc---CCeEEEEE
Q 007283          511 VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMTIKGAHL---GGVYGLAF  586 (609)
Q Consensus       511 ~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~---~~v~~~~~  586 (609)
                      .||+++-+|.++....+-.+..|.++|.++++++.. .+|+|++.|++|++|+++......   ...|.   ++..|.++
T Consensus       350 ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~---v~~~~~~~~rl~c~~~  426 (463)
T KOG0270|consen  350 DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKS---VKEHSFKLGRLHCFAL  426 (463)
T ss_pred             CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcc---cccccccccceeeccc
Confidence            999999999988766666678999999999999865 578999999999999986422111   12232   34445555


Q ss_pred             cC--CCeEEEEeCCCcEEEEEccC
Q 007283          587 TD--EHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       587 s~--~~~l~s~s~D~~i~~W~~~~  608 (609)
                      -+  .-.++.||.-+.+++||+..
T Consensus       427 ~~~~a~~la~GG~k~~~~vwd~~~  450 (463)
T KOG0270|consen  427 DPDVAFTLAFGGEKAVLRVWDIFT  450 (463)
T ss_pred             CCCcceEEEecCccceEEEeeccc
Confidence            52  24577788888899999853

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.75  E-value=3.1e-16  Score=139.94  Aligned_cols=274  Identities=18%  Similarity=0.278  Sum_probs=185.2

Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-------e----eeEEEeec-ccceeEEEEC-------CCCCEEEEEEC
Q 007283           60 ATVARFSPNGEWIASADVSGTVRIWGAHNDH-------V----LKKEFRVL-SGRIDDLQWS-------PDGLRIVACGD  120 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~-------~----~~~~~~~~-~~~v~~~~~s-------pdg~~l~~~~~  120 (609)
                      ...+.|||||.-|++-+.|..+++|.+....       .    ....++.. .+-|...+|=       |+..++++...
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            4457899999999999999999999876321       1    11112222 2346666765       55555555544


Q ss_pred             CCCcceEEEEEcCCCCeeEEEe--cCCccE---EEEEEeeCCCeEEEEecCCCeEEEEeC-CCCceeee-------ccCc
Q 007283          121 GKGKSLVRAFMWDSGTNVGEFD--GHSRRV---LSCAFKPSRPFRIATCGEDFLVNFYEG-PPFKFKLS-------HRGH  187 (609)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~--~h~~~v---~~~~~~p~~~~~i~t~~~d~~i~~~~~-~~~~~~~~-------~~~h  187 (609)
                      ...   +++|+--+++..+++.  .|.+++   .+++|+|||..++  +|....|+++|. +++.....       ..+.
T Consensus       132 ~~P---Ih~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq  206 (406)
T KOG2919|consen  132 DQP---IHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQ  206 (406)
T ss_pred             cCc---eeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccc
Confidence            333   4455554677666654  355544   4799999999755  477888999996 55532211       2345


Q ss_pred             ccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecccC
Q 007283          188 SNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDISED  265 (609)
Q Consensus       188 ~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~~~  265 (609)
                      .+-+.|++|+|-.. .++.++....+-||.......+..+   .+|.+.|+.++|++||+.|++|+. |-.|-.||++..
T Consensus       207 ~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~ll---ggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~  283 (406)
T KOG2919|consen  207 KGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLL---GGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYS  283 (406)
T ss_pred             cceeeeeeccCCCCcceeeecccceeeeEecCCCCceeee---cccCCCeeeEEeccCcCeecccccCCCeEEEEeehhc
Confidence            77899999999755 8899999999989887777766655   389999999999999999999986 788999999742


Q ss_pred             CCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe
Q 007283          266 NHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS  344 (609)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s  344 (609)
                        +...-.+..........+.+.....+..|++++++|.|++|++.+....+..+..|...+..+.+++.- .+++|++
T Consensus       284 --~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~m-pilatss  359 (406)
T KOG2919|consen  284 --RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIM-PILATSS  359 (406)
T ss_pred             --cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCccc-ceeeecc
Confidence              111111111000000111222223466889999999999999988766667777888899999887653 3555554

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=9.2e-16  Score=131.54  Aligned_cols=234  Identities=15%  Similarity=0.226  Sum_probs=167.0

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCC---------CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHN---------DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~---------~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      .|..-+++|.+++|+.|+.+|+|-+..+..         ++.....++.|.++|+.++|.  ..+|+++|||    .++-
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gdG----~V~g   85 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGDG----LVYG   85 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccCc----eEEE
Confidence            366668999999999999999999987653         122223457899999999999  3478888875    3778


Q ss_pred             EEcCCCC------eeEEE--ecCC-----ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEE
Q 007283          130 FMWDSGT------NVGEF--DGHS-----RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRF  196 (609)
Q Consensus       130 ~~~~~~~------~~~~~--~~h~-----~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~  196 (609)
                      |.|....      .+...  .-|.     .+|+++-..|.... +..++.|+.+..||.++++..++++||.++|.++.-
T Consensus        86 w~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS-i~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~  164 (325)
T KOG0649|consen   86 WEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS-ILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVG  164 (325)
T ss_pred             eeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc-EEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence            8887421      11111  1122     45888889988775 555568999999999999999999999999999988


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCccccccCcCC------CCc-cceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCc
Q 007283          197 SPDGSKFISVSSDKKGIIYDGKTADKIGELSPED------GHK-GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK  269 (609)
Q Consensus       197 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~------~h~-~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~  269 (609)
                      -.....+++|+.||++++||.++++....+.+.+      .|. ..|.+++-  +..+|++|+ ...+.+|.++..   .
T Consensus       165 R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss---e  238 (325)
T KOG0649|consen  165 RNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS---E  238 (325)
T ss_pred             cccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC---C
Confidence            4444568999999999999999998876654332      122 24566654  456776665 678999998742   2


Q ss_pred             eEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCC
Q 007283          270 LKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAN  311 (609)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~  311 (609)
                      ...++...      ...-.+.+..+.+++++..+.+.-|.++
T Consensus       239 ~t~vfpip------a~v~~v~F~~d~vl~~G~g~~v~~~~l~  274 (325)
T KOG0649|consen  239 STCVFPIP------ARVHLVDFVDDCVLIGGEGNHVQSYTLN  274 (325)
T ss_pred             ceEEEecc------cceeEeeeecceEEEeccccceeeeeec
Confidence            22333211      1122345667888888888888888765

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=1.2e-16  Score=146.22  Aligned_cols=207  Identities=22%  Similarity=0.262  Sum_probs=149.2

Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-------ceeeeccCcccceEEEEEcCCC-CEEEEEeCCCc
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-------KFKLSHRGHSNFVNCVRFSPDG-SKFISVSSDKK  211 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-------~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~  211 (609)
                      .+.||+.+|..++|.|-+..+||+|+.|.++.+|.++..       +....+.||...|..++|+|.. +.|++++.|.+
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            356999999999999999999999999999999987543       3345678999999999999984 48899999999


Q ss_pred             EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE
Q 007283          212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW  291 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      |.||++.+++.+.++    .|...|++++|+-||.+|++.+.|..||+||.+.   +++...- ..+. +.......++-
T Consensus       156 v~iWnv~tgeali~l----~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~---~~~v~e~-~~he-G~k~~Raifl~  226 (472)
T KOG0303|consen  156 VSIWNVGTGEALITL----DHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRR---GTVVSEG-VAHE-GAKPARAIFLA  226 (472)
T ss_pred             EEEEeccCCceeeec----CCCCeEEEEEeccCCceeeeecccceeEEEcCCC---CcEeeec-cccc-CCCcceeEEec
Confidence            999999999988776    3999999999999999999999999999999873   4444433 1211 11222222233


Q ss_pred             cCCeEEEEEc----CCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE-EEEecCCcEEEEecCc
Q 007283          292 QNDFLVIVSL----GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI-LSSSYDGLIVKWIQGI  356 (609)
Q Consensus       292 ~~~~~~~~~~----~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~-~t~s~dg~i~~W~~~~  356 (609)
                      +++ +++.+.    +..+.+|+......+.....-.+++-.-+=|.+.+..++ +.|-.|+.||.+....
T Consensus       227 ~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~  295 (472)
T KOG0303|consen  227 SGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITN  295 (472)
T ss_pred             cCc-eeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecC
Confidence            344 444433    456888987655544322222222222233444455555 4555799999996543

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.75  E-value=3.6e-16  Score=137.36  Aligned_cols=243  Identities=23%  Similarity=0.386  Sum_probs=176.4

Q ss_pred             cCceeEEeecCCCCeEEEe--C---C----CEEEEEeCCCCccc---------cccc-cCCCCcEEEEECCCCCEEEEEe
Q 007283           16 RGRGILISGHPKSNSILYT--N---G----RSVIILDLSNPLQV---------SIYG-EHAYPATVARFSPNGEWIASAD   76 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~--~---~----~~~~i~~~~~~~~~---------~~~~-~h~~~v~~~~~sp~g~~las~~   76 (609)
                      .|-.-.|+.+|-...|+.+  +   +    ..+.||.+..+...         ..+. .|-++|.|+.|.||+..||+..
T Consensus        63 agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~  142 (370)
T KOG1007|consen   63 AGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD  142 (370)
T ss_pred             CcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec
Confidence            4555578888876555332  1   1    25679998665433         1222 4456899999999999999885


Q ss_pred             CCCcEEEEcCCCCceeeEEEe-----ecccceeEEEECC--CCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccE
Q 007283           77 VSGTVRIWGAHNDHVLKKEFR-----VLSGRIDDLQWSP--DGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRV  148 (609)
Q Consensus        77 ~d~~i~vWd~~~~~~~~~~~~-----~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v  148 (609)
                       |..|.+|+.+.......++.     .+......-+|||  ||..+++.+++.    ++.|+..+-.+...+ ..|...|
T Consensus       143 -dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~t----l~~~D~RT~~~~~sI~dAHgq~v  217 (370)
T KOG1007|consen  143 -DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDST----LQFWDLRTMKKNNSIEDAHGQRV  217 (370)
T ss_pred             -cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCc----EEEEEccchhhhcchhhhhccee
Confidence             88999999986543122221     2344677889999  899999988654    456665554444433 5788899


Q ss_pred             EEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-eeeeccCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc-----
Q 007283          149 LSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-FKLSHRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTAD-----  221 (609)
Q Consensus       149 ~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~-----  221 (609)
                      ..++|.|+....+++||.|+.+++||.+..+ ..+++.+|.-.|.++.|+|. .++|++++.|..+.+|....-.     
T Consensus       218 rdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi  297 (370)
T KOG1007|consen  218 RDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQI  297 (370)
T ss_pred             eeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccc
Confidence            9999999999999999999999999976544 56778899999999999997 4578999999999998532110     


Q ss_pred             ----------------cccc-----cCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecc
Q 007283          222 ----------------KIGE-----LSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDIS  263 (609)
Q Consensus       222 ----------------~~~~-----~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~  263 (609)
                                      +...     +.....|...|++++||.-.. .||+-|.||.+.|=.+.
T Consensus       298 ~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  298 EFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             ccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                            0001     111246899999999998666 56777999999887653

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.73  E-value=2.9e-16  Score=136.25  Aligned_cols=304  Identities=18%  Similarity=0.201  Sum_probs=183.9

Q ss_pred             eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEE
Q 007283          180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKV  259 (609)
Q Consensus       180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~i  259 (609)
                      ..+.+++|...++++.|-.+++ |.+|...|.+++|+.++......+..  .|...|+.+.--|+ ..|.+-+.|..+.+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~--~g~~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRL--FGRLFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhh--hccceeeceeecCC-cchhhcCCCceEEE
Confidence            3455678999999999988876 88899999999999988776544421  36678999998887 56789999999999


Q ss_pred             eecccCCCCceEEEeccCCCCCccceEEEEEEcCC---eEEEEEcCCcEEEEeCCCCCCCc-ee-----eeCCCCCeEEE
Q 007283          260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND---FLVIVSLGGTISIFSANDLEKSP-LQ-----LSGHMKNVTAL  330 (609)
Q Consensus       260 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~i~~~~~~~~~~~~-~~-----~~~h~~~v~~~  330 (609)
                      |++...... .+..+....   +.........+++   .++..-..+.-.... .+..... ..     -.+..+.+.+.
T Consensus        82 w~ia~s~~i-~i~Si~~ns---lgFCrfSl~~~~k~~eqll~yp~rgsde~h~-~D~g~~tqv~i~dd~~~~Klgsvmc~  156 (323)
T KOG0322|consen   82 WTIAYSAFI-SIHSIVVNS---LGFCRFSLVKKPKNSEQLLEYPSRGSDETHK-QDGGDTTQVQIADDSERSKLGSVMCQ  156 (323)
T ss_pred             EEccCcceE-EEeeeeccc---cccccceeccCCCcchhheecCCcccchhhh-hccCccceeEccCchhccccCceeee
Confidence            998642111 111110000   0000000000000   111110000000000 0000000 00     11223344444


Q ss_pred             EEe-cCCCC-EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccC
Q 007283          331 TVL-NIDPK-VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIG  408 (609)
Q Consensus       331 ~~~-~~~~~-~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  408 (609)
                      .+- ..... +++.|-.+|.+.+|+...+... .+                              ++...          
T Consensus       157 ~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~-~~------------------------------~~~~~----------  195 (323)
T KOG0322|consen  157 DKDHACGSTFLLLAGYESGHVVIWDLSTGDKI-IQ------------------------------LPQSS----------  195 (323)
T ss_pred             eccccccceEEEEEeccCCeEEEEEccCCcee-ec------------------------------ccccc----------
Confidence            322 11222 4556667888888876543100 00                              00000          


Q ss_pred             CCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCC--eeeeeEE
Q 007283          409 SQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD--TLTEEAV  486 (609)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~--~~~~~~~  486 (609)
                                                   ........+..++.++.+.+....-|+|+.+..+..|+++..  .+.....
T Consensus       196 -----------------------------kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e  246 (323)
T KOG0322|consen  196 -----------------------------KVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE  246 (323)
T ss_pred             -----------------------------ccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence                                         000011123467788888887777889999999999988643  2322222


Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          487 LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       487 ~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      .+-..-.|..+..-||++.+|++++|+.+|+|+-++.. .+..++.|.+.|++++||||...+|+|+.|+.|.+|++
T Consensus       247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~-pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLN-PLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCC-chhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            22223458888999999999999999999999976654 35567899999999999999999999999999999985

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=8.9e-17  Score=148.88  Aligned_cols=197  Identities=21%  Similarity=0.323  Sum_probs=147.0

Q ss_pred             EEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEE
Q 007283           61 TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGE  140 (609)
Q Consensus        61 ~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  140 (609)
                      .+++|+++|..||++..||++|||+++.-..+. ....|.+.|..+.|||||+.|+++|.+.    .++|+.+.+..+..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l-~e~~~~~eV~DL~FS~dgk~lasig~d~----~~VW~~~~g~~~a~  222 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTIL-EEIAHHAEVKDLDFSPDGKFLASIGADS----ARVWSVNTGAALAR  222 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhh-hhHhhcCccccceeCCCCcEEEEecCCc----eEEEEeccCchhhh
Confidence            789999999999999999999999987654332 3556788999999999999999998653    56777777755544


Q ss_pred             Ee--cCCccEEEEEEeeCC---CeEEEEe-cCCCeEEEEeCCCCce-----eeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283          141 FD--GHSRRVLSCAFKPSR---PFRIATC-GEDFLVNFYEGPPFKF-----KLSHRGHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       141 ~~--~h~~~v~~~~~~p~~---~~~i~t~-~~d~~i~~~~~~~~~~-----~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                      ..  +-......|.|+.++   ..++++- ..-+.+..++...++.     .+........|++++.++||+++|.|+.|
T Consensus       223 ~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~d  302 (398)
T KOG0771|consen  223 KTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMD  302 (398)
T ss_pred             cCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccC
Confidence            33  112345578887665   3444443 3334455544332221     11111223469999999999999999999


Q ss_pred             CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      |.|.|++..+-+.+...+  +.|...|+.+.|+||.+++++.+.|.+..+..+..
T Consensus       303 GsVai~~~~~lq~~~~vk--~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  303 GSVAIYDAKSLQRLQYVK--EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CcEEEEEeceeeeeEeeh--hhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999988877765553  47999999999999999999999999999987753

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.73  E-value=1.6e-15  Score=135.73  Aligned_cols=221  Identities=19%  Similarity=0.237  Sum_probs=150.2

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEE-EeCCCcEEEEcCCCCceeeEEEeec
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIAS-ADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las-~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      ..+++|+|++|+..+.-.++|-|..+-+..+.|.- -+.|.-+.+.-|.-++.. +..|+.|++|++...+-- ......
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~-ckIdeg   90 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY-CKIDEG   90 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeecceeE-EEeccC
Confidence            57899999999999888999999887666554443 356888889988888774 567899999999765421 234556


Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecC-CccEEEEEEeeCCCeEEEEec-CCCe--EEEEeC
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGH-SRRVLSCAFKPSRPFRIATCG-EDFL--VNFYEG  175 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~i~t~~-~d~~--i~~~~~  175 (609)
                      ..++..++|||||+.++..+.-    ..|+..|...+....+-.| ...+...+|+|++.+ .+.++ .|..  +.+..-
T Consensus        91 ~agls~~~WSPdgrhiL~tseF----~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f-~ai~sRrDCkdyv~i~~c  165 (447)
T KOG4497|consen   91 QAGLSSISWSPDGRHILLTSEF----DLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQF-CAILSRRDCKDYVQISSC  165 (447)
T ss_pred             CCcceeeeECCCcceEeeeecc----eeEEEEEEeccceeEEecccccCceeEEECCCCce-eeeeecccHHHHHHHHhh
Confidence            6789999999999999887642    3567777766554444444 334678899999986 44443 3321  111111


Q ss_pred             CCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC
Q 007283          176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK  255 (609)
Q Consensus       176 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~  255 (609)
                      ..+.....+.-.....+.+.|+|||+.||+         ||.--.-.+..+    .-.-.+..++|+|-+++|+.|+.|+
T Consensus       166 ~~W~ll~~f~~dT~DltgieWsPdg~~laV---------wd~~Leykv~aY----e~~lG~k~v~wsP~~qflavGsyD~  232 (447)
T KOG4497|consen  166 KAWILLKEFKLDTIDLTGIEWSPDGNWLAV---------WDNVLEYKVYAY----ERGLGLKFVEWSPCNQFLAVGSYDQ  232 (447)
T ss_pred             HHHHHHHhcCCCcccccCceECCCCcEEEE---------ecchhhheeeee----eeccceeEEEeccccceEEeeccch
Confidence            112223334445566788999999998774         432111111111    0113588899999999999999999


Q ss_pred             cEEEee
Q 007283          256 SAKVWD  261 (609)
Q Consensus       256 ~i~iwd  261 (609)
                      .+|+-+
T Consensus       233 ~lrvln  238 (447)
T KOG4497|consen  233 MLRVLN  238 (447)
T ss_pred             hhhhhc
Confidence            999865

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=3.4e-17  Score=169.36  Aligned_cols=222  Identities=16%  Similarity=0.283  Sum_probs=174.3

Q ss_pred             CEEEEEeCCC----C--ccccccccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceeeEEE-e-ecccceeEEE
Q 007283           37 RSVIILDLSN----P--LQVSIYGEHAYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHVLKKEF-R-VLSGRIDDLQ  107 (609)
Q Consensus        37 ~~~~i~~~~~----~--~~~~~~~~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~~~~~~-~-~~~~~v~~~~  107 (609)
                      +.|.+||...    .  ..+..+..|++.|..+.|+|.+. +||+|+.||+|.|||+..-+.- ... . ...+.|.+++
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP-~~~~~~~~~~eI~~ls  168 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETP-FTPGSQAPPSEIKCLS  168 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCC-CCCCCCCCcccceEec
Confidence            5677777643    1  23556789999999999999765 9999999999999999864311 111 1 1356799999


Q ss_pred             ECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCc--cEEEEEEeeCCCeEEEEecCCC---eEEEEeCCCCc-ee
Q 007283          108 WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR--RVLSCAFKPSRPFRIATCGEDF---LVNFYEGPPFK-FK  181 (609)
Q Consensus       108 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~p~~~~~i~t~~~d~---~i~~~~~~~~~-~~  181 (609)
                      |...-+++++.+...++  ..+|+.+..+.+..+..|.+  .+..++|||++..++++++.|.   .|.+||.+... ..
T Consensus       169 WNrkvqhILAS~s~sg~--~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~  246 (1049)
T KOG0307|consen  169 WNRKVSHILASGSPSGR--AVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL  246 (1049)
T ss_pred             cchhhhHHhhccCCCCC--ceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence            99988888877755443  44677767766766766654  4778999999998898887764   68999976433 34


Q ss_pred             eeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEE
Q 007283          182 LSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKV  259 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~i  259 (609)
                      +.+.+|...|.++.|++.+ .+|++++.|+.+++|+.++++.+..+.   .....+..+.|+|... .++.++-||.|-|
T Consensus       247 k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p---~~~nW~fdv~w~pr~P~~~A~asfdgkI~I  323 (1049)
T KOG0307|consen  247 KILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELP---AQGNWCFDVQWCPRNPSVMAAASFDGKISI  323 (1049)
T ss_pred             hhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecC---CCCcceeeeeecCCCcchhhhheeccceee
Confidence            5568999999999999987 689999999999999999999888774   3457899999999876 7888899999999


Q ss_pred             eeccc
Q 007283          260 WDISE  264 (609)
Q Consensus       260 wd~~~  264 (609)
                      +.+..
T Consensus       324 ~sl~~  328 (1049)
T KOG0307|consen  324 YSLQG  328 (1049)
T ss_pred             eeeec
Confidence            99864

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.72  E-value=3.5e-15  Score=133.28  Aligned_cols=236  Identities=22%  Similarity=0.325  Sum_probs=167.2

Q ss_pred             EEeecCCCCeEEEeC-CCEEEEEeCCCCc------cccccccC-------CCCcEEEEE-------CCCCCEEEEEeCCC
Q 007283           21 LISGHPKSNSILYTN-GRSVIILDLSNPL------QVSIYGEH-------AYPATVARF-------SPNGEWIASADVSG   79 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~-~~~~~i~~~~~~~------~~~~~~~h-------~~~v~~~~~-------sp~g~~las~~~d~   79 (609)
                      ....+|||..|+... .+.+.+|.+....      ....+..|       .+.|....+       .|+..++|+.+.+.
T Consensus        54 gckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~  133 (406)
T KOG2919|consen   54 GCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQ  133 (406)
T ss_pred             cceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccC
Confidence            456899999887764 6888999874211      11111111       233544443       48899999999999


Q ss_pred             cEEEEcCCCCceeeEEEeec--cc---ceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCe--eEEE-----ecCCc
Q 007283           80 TVRIWGAHNDHVLKKEFRVL--SG---RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTN--VGEF-----DGHSR  146 (609)
Q Consensus        80 ~i~vWd~~~~~~~~~~~~~~--~~---~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~-----~~h~~  146 (609)
                      -|.+||.-+++ ++..++..  ..   .--+++|+|||.+|++. .   +..+++++... +..  ...-     .+..+
T Consensus       134 PIh~wdaftG~-lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-y---krcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  134 PIHLWDAFTGK-LRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-Y---KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             ceeeeeccccc-cccchhhhhhHHhhhhheeEEecCCCCeEeec-c---cceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            99999999876 44445543  22   34579999999999973 2   23577777643 211  1111     13356


Q ss_pred             cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcc-cc
Q 007283          147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKTADK-IG  224 (609)
Q Consensus       147 ~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd~~~~~~-~~  224 (609)
                      -+.+++|+|.+...+|.|+....+-+|..........+.||.+.|+.+.|.+||+.|.+|+. |-.|..||++.... +.
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~  288 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVY  288 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhh
Confidence            67889999999878999999888888876666666777899999999999999999998875 77899999876543 22


Q ss_pred             ccCcCCCCcc-ceEEE--EECCCCCeEEEEeCCCcEEEeeccc
Q 007283          225 ELSPEDGHKG-SVYAV--SWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       225 ~~~~~~~h~~-~V~~l--~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      .+   .+|.+ .-..|  ...|+++.|++|+.||.|++||++.
T Consensus       289 ~L---~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~  328 (406)
T KOG2919|consen  289 AL---ERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD  328 (406)
T ss_pred             hh---hhhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence            22   34544 22333  4468899999999999999999874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=3.8e-17  Score=162.74  Aligned_cols=240  Identities=22%  Similarity=0.289  Sum_probs=176.9

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEE
Q 007283           52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM  131 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  131 (609)
                      .+.||..-|+|++|...|+||.+|+.|..++||..++..++                                       
T Consensus       185 rLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l---------------------------------------  225 (1113)
T KOG0644|consen  185 RLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL---------------------------------------  225 (1113)
T ss_pred             HHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh---------------------------------------
Confidence            36799999999999999999999999999999997665422                                       


Q ss_pred             cCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc
Q 007283          132 WDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK  211 (609)
Q Consensus       132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~  211 (609)
                             ++..||.+.|+.++.+..+. ++|+++.|..|++|-.+.+..+..+.||.+.|++++|+|--    +.+.||+
T Consensus       226 -------As~rGhs~ditdlavs~~n~-~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt  293 (1113)
T KOG0644|consen  226 -------ASCRGHSGDITDLAVSSNNT-MIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGT  293 (1113)
T ss_pred             -------ccCCCCccccchhccchhhh-hhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCc
Confidence                   23457888888888876654 59999999999999999988888999999999999999963    7789999


Q ss_pred             EEEEeCCCCccccccCcC-CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEE
Q 007283          212 GIIYDGKTADKIGELSPE-DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL  290 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (609)
                      +++||.+-.-.+..-.+. ......+.++-|...+..++|++.|+.-+.|.+.........-.+            +...
T Consensus       294 ~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif------------~t~s  361 (1113)
T KOG0644|consen  294 CRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIF------------VTRS  361 (1113)
T ss_pred             eEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEE------------Eecc
Confidence            999998732222221111 122356888889999999999999999999976421000000000            0000


Q ss_pred             -EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          291 -WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       291 -~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                       ..+.+.+++-.+-.+.+|++.+. ...+.+.+|...+..+.+++.++.+..+++.||...+|+.-
T Consensus       362 sd~~~~~~~ar~~~~~~vwnl~~g-~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~  426 (1113)
T KOG0644|consen  362 SDLSSIVVTARNDHRLCVWNLYTG-QLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIW  426 (1113)
T ss_pred             ccccccceeeeeeeEeeeeecccc-hhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecc
Confidence             00123334444445566765443 23456789999999999999988999999999999999753

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=9.4e-16  Score=138.03  Aligned_cols=189  Identities=18%  Similarity=0.226  Sum_probs=138.4

Q ss_pred             CCCEEEEEeCCCCccccccccCCCCcEEEEECC--CCCEEEEEeCCCcEEEEcCCCCc-eeeEEEeecc-cceeEEEECC
Q 007283           35 NGRSVIILDLSNPLQVSIYGEHAYPATVARFSP--NGEWIASADVSGTVRIWGAHNDH-VLKKEFRVLS-GRIDDLQWSP  110 (609)
Q Consensus        35 ~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp--~g~~las~~~d~~i~vWd~~~~~-~~~~~~~~~~-~~v~~~~~sp  110 (609)
                      .-+.+.|||..++..+..+.+|.+-++.++|..  .+..+.+++.||+||+||+.... .-+..+..++ .+..+++-.-
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc  127 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC  127 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence            446899999999999999999999999999977  56789999999999999997643 2223344444 2333333332


Q ss_pred             CCCEEEEEECCCCcc--eEEEEEcCCCCe-eEE-EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc---eeee
Q 007283          111 DGLRIVACGDGKGKS--LVRAFMWDSGTN-VGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK---FKLS  183 (609)
Q Consensus       111 dg~~l~~~~~~~~~~--~~~~~~~~~~~~-~~~-~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~---~~~~  183 (609)
                       ...++++|.-....  .+.+|+|....+ ++. ...|.+.|+++.|+|.++..+++|+.||.+.++|...-.   ....
T Consensus       128 -k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~  206 (376)
T KOG1188|consen  128 -KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLH  206 (376)
T ss_pred             -cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHH
Confidence             34566666333332  355677766554 554 468999999999999999999999999999999864221   1112


Q ss_pred             ccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcccc
Q 007283          184 HRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       184 ~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      .-.|...|.++.|..++ ++|.+-+...+..+|+.+.+....
T Consensus       207 viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  207 VINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             hhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence            23567789999999887 357888899999999988876443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=2.1e-15  Score=154.25  Aligned_cols=301  Identities=20%  Similarity=0.278  Sum_probs=195.1

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC--CCCeEEEEeCCCcEEEeecccCC-
Q 007283          190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP--DGKQVLTASADKSAKVWDISEDN-  266 (609)
Q Consensus       190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~s~d~~i~iwd~~~~~-  266 (609)
                      +-..+.|+|-...++++.+.-.|++||++.++.+..+.........|..+.+-.  |..++++++.||.||||+--... 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            456788999888899888888999999999998877754434456799999876  45689999999999999743221 


Q ss_pred             -CCceEEEeccCC--CCCccceEEEEEEc--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEE
Q 007283          267 -HGKLKKTLTPSG--SGGVDDMLVGCLWQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVIL  341 (609)
Q Consensus       267 -~~~~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  341 (609)
                       ..++......-.  .......-....|+  ...+++.+....|++|+........-...+-...|+++......+++++
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~ 1225 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIA 1225 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEE
Confidence             122222221110  00011111334565  4467777778889999975432111112234445666655444468999


Q ss_pred             EEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCC
Q 007283          342 SSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP  421 (609)
Q Consensus       342 t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  421 (609)
                      .|-.||.|+++|......       .+                   .+..|                             
T Consensus      1226 AGfaDGsvRvyD~R~a~~-------ds-------------------~v~~~----------------------------- 1250 (1387)
T KOG1517|consen 1226 AGFADGSVRVYDRRMAPP-------DS-------------------LVCVY----------------------------- 1250 (1387)
T ss_pred             EeecCCceEEeecccCCc-------cc-------------------cceee-----------------------------
Confidence            999999999997532110       00                   00000                             


Q ss_pred             cEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEEecCCeeeeeEEEecCC--C-ceEEE
Q 007283          422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS-EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR--G-AVSVI  497 (609)
Q Consensus       422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~--~-~i~~v  497 (609)
                                    +.++      -..+|..+.+-++|- .+++|+.||.|++||++............|-  | ..+++
T Consensus      1251 --------------R~h~------~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal 1310 (1387)
T KOG1517|consen 1251 --------------REHN------DVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTAL 1310 (1387)
T ss_pred             --------------cccC------CcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceee
Confidence                          0000      001234444555443 4999999999999999864322222223333  4 59999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceEEe-----eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          498 RYSPDVSMFASGDVNREAIVWDRVSREVKLK-----NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       498 ~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-----~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      ..++.-..+|+|+. +.++||++.+......     .+......+.|++|+|---+||.|+.|.+|.||....+
T Consensus      1311 ~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1311 TVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             eeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence            99999999999999 9999999866543211     11223456899999999999999999999999987643

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.70  E-value=9.2e-16  Score=133.18  Aligned_cols=69  Identities=30%  Similarity=0.505  Sum_probs=62.4

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDR  520 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~  520 (609)
                      +..+.+-||++.+|+++.|++||+|+.++.  ....+++-|.+.|++++|+|+...+|+||.|.+|-+|++
T Consensus       254 v~gvrIRpD~KIlATAGWD~RiRVyswrtl--~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  254 VSGVRIRPDGKILATAGWDHRIRVYSWRTL--NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             ccceEEccCCcEEeecccCCcEEEEEeccC--CchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            556778899999999999999999998754  346789999999999999999999999999999999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=3.7e-15  Score=136.20  Aligned_cols=170  Identities=17%  Similarity=0.196  Sum_probs=128.7

Q ss_pred             cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283           53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  132 (609)
                      +.+|.+-|+++.||.+|++||+|+.|..++||.++..- ..+                                      
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~-~~k--------------------------------------   92 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELM-VRK--------------------------------------   92 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHH-hhc--------------------------------------
Confidence            45899999999999999999999999999999875421 000                                      


Q ss_pred             CCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc--CcccceEEEEEcCCCCEEEEEeCC
Q 007283          133 DSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR--GHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       133 ~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                       ..++++.. ..|...|.+++|...+.+ +.+|+.++++...|+++.+....+.  ...+.|..+..+|-.+.|++.+.+
T Consensus        93 -~~KPI~~~~~~H~SNIF~L~F~~~N~~-~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~  170 (609)
T KOG4227|consen   93 -TPKPIGVMEHPHRSNIFSLEFDLENRF-LYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRA  170 (609)
T ss_pred             -CCCCceeccCccccceEEEEEccCCee-EecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecC
Confidence             01112212 245678999999877764 8899999999999999877655543  334589999999999999999999


Q ss_pred             CcEEEEeCCCCc-cccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeeccc
Q 007283          210 KKGIIYDGKTAD-KIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISE  264 (609)
Q Consensus       210 ~~i~iwd~~~~~-~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~  264 (609)
                      +.+.+||.+... .+..+- ..........+-|+|... +|++.+..+-+.+||.+.
T Consensus       171 ~~V~~~D~Rd~~~~~~~~~-~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~  226 (609)
T KOG4227|consen  171 KLVSFIDNRDRQNPISLVL-PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM  226 (609)
T ss_pred             ceEEEEeccCCCCCCceee-ecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence            999999987654 222221 123445678899999764 777888888999999863

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.70  E-value=2.9e-15  Score=152.57  Aligned_cols=212  Identities=17%  Similarity=0.193  Sum_probs=147.9

Q ss_pred             CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283           37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL  113 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~  113 (609)
                      ..+.++|...... ..+..|.+.+..++|||||++||.++.+   .+|.+||+.+++..  .+....+....++|||||+
T Consensus       184 ~~i~i~d~dg~~~-~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~--~l~~~~g~~~~~~wSPDG~  260 (429)
T PRK01742        184 YEVRVADYDGFNQ-FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK--VVASFRGHNGAPAFSPDGS  260 (429)
T ss_pred             EEEEEECCCCCCc-eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--EEecCCCccCceeECCCCC
Confidence            4788999865554 4567788899999999999999987643   46999999876521  2233334456789999999


Q ss_pred             EEEEEECCCCcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC--CceeeeccCcccc
Q 007283          114 RIVACGDGKGKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP--FKFKLSHRGHSNF  190 (609)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~--~~~~~~~~~h~~~  190 (609)
                      +|+.+.+..+.  .++|.++. +.....+..+...+....|+|++..++.+...++..++|+...  .... .+ ++.. 
T Consensus       261 ~La~~~~~~g~--~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~-~l-~~~~-  335 (429)
T PRK01742        261 RLAFASSKDGV--LNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS-LV-GGRG-  335 (429)
T ss_pred             EEEEEEecCCc--EEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE-Ee-cCCC-
Confidence            99987643332  45666653 2334556667777889999999987666666777778886432  2221 12 3333 


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       191 v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                       .+..|+|||+.|+.++.++ +.+||..+++... +..  .+  ...++.|+|||++|+.++.++...+|++.
T Consensus       336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~~-lt~--~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~  401 (429)
T PRK01742        336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTEV-LSS--TF--LDESPSISPNGIMIIYSSTQGLGKVLQLV  401 (429)
T ss_pred             -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeEE-ecC--CC--CCCCceECCCCCEEEEEEcCCCceEEEEE
Confidence             4578999999998887765 5568988776432 211  11  23568899999999999999988888753

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.69  E-value=2.1e-16  Score=157.53  Aligned_cols=281  Identities=21%  Similarity=0.252  Sum_probs=198.0

Q ss_pred             EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 007283          141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA  220 (609)
Q Consensus       141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~  220 (609)
                      +.+|...|+|..|...+.+ |.+|+.|..+++|..++..+....+||...|+.++.+.+.-++++++.|..|++|-..++
T Consensus       186 LlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  186 LLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             HHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            4589999999999999975 999999999999999998898999999999999999999889999999999999999998


Q ss_pred             ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEE
Q 007283          221 DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS  300 (609)
Q Consensus       221 ~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (609)
                      ..+..+   .||++.|++++|+|..    +.+.||++++||.+-.   ..+  +.+..                      
T Consensus       265 ~pvsvL---rghtgavtaiafsP~~----sss~dgt~~~wd~r~~---~~~--y~prp----------------------  310 (1113)
T KOG0644|consen  265 APVSVL---RGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLE---PRI--YVPRP----------------------  310 (1113)
T ss_pred             chHHHH---hccccceeeeccCccc----cCCCCCceEecccccc---ccc--cCCCC----------------------
Confidence            877655   5999999999999975    7788999999997511   000  00000                      


Q ss_pred             cCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcE
Q 007283          301 LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEI  380 (609)
Q Consensus       301 ~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (609)
                                       ..+.+. +-+..+.+. .+..-+.|++.|+.-+.|.....                +...   
T Consensus       311 -----------------~~~~~~-~~~~s~~~~-~~~~~f~Tgs~d~ea~n~e~~~l----------------~~~~---  352 (1113)
T KOG0644|consen  311 -----------------LKFTEK-DLVDSILFE-NNGDRFLTGSRDGEARNHEFEQL----------------AWRS---  352 (1113)
T ss_pred             -----------------CCcccc-cceeeeecc-ccccccccccCCcccccchhhHh----------------hhhc---
Confidence                             000000 111122221 22345778888887776632100                0000   


Q ss_pred             EEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC
Q 007283          381 VTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS  460 (609)
Q Consensus       381 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  460 (609)
                                                               ..+.+.+..                         +--..
T Consensus       353 -----------------------------------------~~lif~t~s-------------------------sd~~~  366 (1113)
T KOG0644|consen  353 -----------------------------------------NLLIFVTRS-------------------------SDLSS  366 (1113)
T ss_pred             -----------------------------------------cceEEEecc-------------------------ccccc
Confidence                                                     000000000                         00002


Q ss_pred             EEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCE-EEEEeCCCeEEEEEccCCceEEeeecCCCCceEE
Q 007283          461 EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSM-FASGDVNREAIVWDRVSREVKLKNMLYHTARINC  539 (609)
Q Consensus       461 ~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~-l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~  539 (609)
                      +.+++-.+-.+.+|++..+.+  ...+.+|...+..+.++|-+.. ..+++.||...|||+-.+........+|.. +..
T Consensus       367 ~~~~ar~~~~~~vwnl~~g~l--~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~k-l~d  443 (1113)
T KOG0644|consen  367 IVVTARNDHRLCVWNLYTGQL--LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGK-LVD  443 (1113)
T ss_pred             cceeeeeeeEeeeeecccchh--hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccce-eec
Confidence            344445566778898877765  3567889999999999997654 558999999999998766543334455554 446


Q ss_pred             EEECCCCcEEEEEeCCCeEEEEEc
Q 007283          540 LAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       540 l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      .+||+||..++....-|.+.+...
T Consensus       444 ~kFSqdgts~~lsd~hgql~i~g~  467 (1113)
T KOG0644|consen  444 GKFSQDGTSIALSDDHGQLYILGT  467 (1113)
T ss_pred             cccCCCCceEecCCCCCceEEecc
Confidence            699999999999988899888864

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.69  E-value=7.3e-16  Score=147.65  Aligned_cols=267  Identities=16%  Similarity=0.295  Sum_probs=168.9

Q ss_pred             eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----ccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283          180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA-----DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD  254 (609)
Q Consensus       180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d  254 (609)
                      ...++..|.+.|..++|.|-...|++|+.|+++.+|+.+..     ..+.++....+|.++|.|++..+.++.+++||.|
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence            34456778899999999999999999999999999998321     1122222346899999999999999999999999


Q ss_pred             CcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec
Q 007283          255 KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN  334 (609)
Q Consensus       255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  334 (609)
                      |+|+.|++.....        +.   .                            ..+.......+.||...|+.++++.
T Consensus       366 g~I~~w~~p~n~d--------p~---d----------------------------s~dp~vl~~~l~Ghtdavw~l~~s~  406 (577)
T KOG0642|consen  366 GTIRCWNLPPNQD--------PD---D----------------------------SYDPSVLSGTLLGHTDAVWLLALSS  406 (577)
T ss_pred             ceeeeeccCCCCC--------cc---c----------------------------ccCcchhccceeccccceeeeeecc
Confidence            9999998742100        00   0                            0000111235779999999999885


Q ss_pred             CCCCEEEEEecCCcEEEEecCccccceecccccc-ceeEeeeeCCc--EEEEeccceEEEEeccCCccccccccccCCCC
Q 007283          335 IDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS-QIKCFAAIEEE--IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP  411 (609)
Q Consensus       335 ~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  411 (609)
                       .+..+++|+.||++++|.........+...... ....+......  ...+++  ......+..        ++.   .
T Consensus       407 -~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~--~~~~~~~~~--------~ev---~  472 (577)
T KOG0642|consen  407 -TKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASF--RFGYTSIDD--------MEV---V  472 (577)
T ss_pred             -cccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhc--ccccccchh--------hhh---h
Confidence             346799999999999997654432111111100 00111111100  000000  000000000        000   0


Q ss_pred             ceeEeeccCCcEEEEE--ecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEec
Q 007283          412 KDLSVALHYPELVLVS--TDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEK  489 (609)
Q Consensus       412 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~  489 (609)
                      .         ...++.  ...+..            ..-.+.-+...|.+.+.+++-.|+.|+++|...+.+.  .....
T Consensus       473 s---------~~~~~~s~~~~~~~------------~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l--~s~~a  529 (577)
T KOG0642|consen  473 S---------DLLIFESSASPGPR------------RYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL--HSMVA  529 (577)
T ss_pred             h---------heeeccccCCCccc------------ccCccceEEecCCCCeeEecccCCceecccccccccc--hheee
Confidence            0         000000  000000            0012344556888899999999999999998877653  44568


Q ss_pred             CCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283          490 HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       490 h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~  522 (609)
                      |...++++++.|+|-+|++++.|+.+++|.+..
T Consensus       530 ~~~svtslai~~ng~~l~s~s~d~sv~l~kld~  562 (577)
T KOG0642|consen  530 HKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDV  562 (577)
T ss_pred             ccceecceeecCCCceEEeecCCceeehhhccc
Confidence            999999999999999999999999999998644

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.69  E-value=2.9e-13  Score=133.70  Aligned_cols=283  Identities=12%  Similarity=0.086  Sum_probs=168.3

Q ss_pred             EEEEecCCCeEEEEeCCC-Cc--eeeeccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccc
Q 007283          160 RIATCGEDFLVNFYEGPP-FK--FKLSHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGS  235 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~-~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~  235 (609)
                      ++++.+.++.|.+|+..+ ++  ....+. +......++++|++++|++++ .++.+.+|+......+...... ...+.
T Consensus         4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~-~~~~~   81 (330)
T PRK11028          4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAES-PLPGS   81 (330)
T ss_pred             EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeee-cCCCC
Confidence            345557788899998753 33  222332 334577889999999876664 5788999988632112111110 12234


Q ss_pred             eEEEEECCCCCeEEEEeC-CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCC
Q 007283          236 VYAVSWSPDGKQVLTASA-DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLE  314 (609)
Q Consensus       236 V~~l~~spd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~  314 (609)
                      ...+.|+|++++|++++. ++.|.+|+++..  +.......                                       
T Consensus        82 p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~--g~~~~~~~---------------------------------------  120 (330)
T PRK11028         82 PTHISTDHQGRFLFSASYNANCVSVSPLDKD--GIPVAPIQ---------------------------------------  120 (330)
T ss_pred             ceEEEECCCCCEEEEEEcCCCeEEEEEECCC--CCCCCcee---------------------------------------
Confidence            678999999998888764 789999998531  11100000                                       


Q ss_pred             CCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEec
Q 007283          315 KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSL  394 (609)
Q Consensus       315 ~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  394 (609)
                          .+. +......+++++....++++...++.|.+|+.+...  .........                         
T Consensus       121 ----~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g--~l~~~~~~~-------------------------  168 (330)
T PRK11028        121 ----IIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDG--HLVAQEPAE-------------------------  168 (330)
T ss_pred             ----ecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCC--cccccCCCc-------------------------
Confidence                000 001122344444333445666678999999764310  000000000                         


Q ss_pred             cCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeC-CCcEEE
Q 007283          395 QGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQ-DGKLRV  473 (609)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~-dg~i~i  473 (609)
                                         .                            ..........++++|||+++++.+. +++|.+
T Consensus       169 -------------------~----------------------------~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v  201 (330)
T PRK11028        169 -------------------V----------------------------TTVEGAGPRHMVFHPNQQYAYCVNELNSSVDV  201 (330)
T ss_pred             -------------------e----------------------------ecCCCCCCceEEECCCCCEEEEEecCCCEEEE
Confidence                               0                            0000012345789999999988876 899999


Q ss_pred             EEecC--CeeeeeEEEecC------CCceEEEEECCCCCEEEEEeC-CCeEEEEEccCCceEEeeecCC---CCceEEEE
Q 007283          474 YSIRG--DTLTEEAVLEKH------RGAVSVIRYSPDVSMFASGDV-NREAIVWDRVSREVKLKNMLYH---TARINCLA  541 (609)
Q Consensus       474 w~~~~--~~~~~~~~~~~h------~~~i~~v~~s~~~~~l~s~s~-d~~v~iwd~~~~~~~~~~~~~h---~~~i~~l~  541 (609)
                      |+++.  +.+.....+..+      ......+.++||++++.++.. ++.|.+|++......++ +..+   ......++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~-~~~~~~~~~~p~~~~  280 (330)
T PRK11028        202 WQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS-FEGHQPTETQPRGFN  280 (330)
T ss_pred             EEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE-EeEEEeccccCCceE
Confidence            99973  333222222211      122346889999999888854 78999999854432221 1112   12456899


Q ss_pred             ECCCCcEEEEEeC-CCeEEEEEcCC
Q 007283          542 WSPNNSMVATGSL-DTCVIIYEIDK  565 (609)
Q Consensus       542 ~s~d~~~l~s~s~-D~~v~vw~~~~  565 (609)
                      |+|||++|+++.. +++|.+|+++.
T Consensus       281 ~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        281 IDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             ECCCCCEEEEEEccCCcEEEEEEcC
Confidence            9999999998775 89999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.66  E-value=3e-13  Score=133.60  Aligned_cols=269  Identities=10%  Similarity=0.100  Sum_probs=166.2

Q ss_pred             CCCEEEEEeCCC-Cc--cccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCC-CceeeEEEeecccceeEEEEC
Q 007283           35 NGRSVIILDLSN-PL--QVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHN-DHVLKKEFRVLSGRIDDLQWS  109 (609)
Q Consensus        35 ~~~~~~i~~~~~-~~--~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~-~~~~~~~~~~~~~~v~~~~~s  109 (609)
                      .++.|.+|++.+ ++  ....+. +.+....++++|+|++|+.++ .++.|.+|++.. ++..........+....++|+
T Consensus        10 ~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~   88 (330)
T PRK11028         10 ESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTD   88 (330)
T ss_pred             CCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEEC
Confidence            357899999953 32  223232 345678899999999987654 588999999873 222111111123456789999


Q ss_pred             CCCCEEEEEECCCCcceEEEEEcCCCC----eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-ceee--
Q 007283          110 PDGLRIVACGDGKGKSLVRAFMWDSGT----NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-KFKL--  182 (609)
Q Consensus       110 pdg~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-~~~~--  182 (609)
                      |||++|+++..+.+  .+.++..+...    .+..+. +......++++|++.+.+++...++.|.+|+..+. ....  
T Consensus        89 ~~g~~l~v~~~~~~--~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~  165 (330)
T PRK11028         89 HQGRFLFSASYNAN--CVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE  165 (330)
T ss_pred             CCCCEEEEEEcCCC--eEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC
Confidence            99999998875432  35566665321    222222 22345678899999987788888899999997652 2210  


Q ss_pred             ----eccCcccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--Cc--cccccCcCC---CCccceEEEEECCCCCeEEE
Q 007283          183 ----SHRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKT--AD--KIGELSPED---GHKGSVYAVSWSPDGKQVLT  250 (609)
Q Consensus       183 ----~~~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd~~~--~~--~~~~~~~~~---~h~~~V~~l~~spd~~~l~s  250 (609)
                          ... .......+.|+|+|++++++.. ++.+.+|+...  ++  .+..+....   .+......+.|+|++++|++
T Consensus       166 ~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv  244 (330)
T PRK11028        166 PAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYA  244 (330)
T ss_pred             CCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEE
Confidence                111 1233568899999999887776 89999999863  22  122221110   11223346889999999888


Q ss_pred             EeC-CCcEEEeecccCCC-CceEEEeccCCCCCccceEEEEEEcCCeEEEEEc-CCcEEEEeCCC
Q 007283          251 ASA-DKSAKVWDISEDNH-GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL-GGTISIFSAND  312 (609)
Q Consensus       251 ~s~-d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~  312 (609)
                      +.. ++.|.+|++..... .+....... +. ...  .+.+..++.+++++.. ++++.+|..+.
T Consensus       245 ~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~-~p~--~~~~~~dg~~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        245 CDRTASLISVFSVSEDGSVLSFEGHQPT-ET-QPR--GFNIDHSGKYLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             ecCCCCeEEEEEEeCCCCeEEEeEEEec-cc-cCC--ceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence            854 78999999864311 112222211 10 011  1233345667776654 78899998653

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.3e-14  Score=130.86  Aligned_cols=184  Identities=18%  Similarity=0.287  Sum_probs=136.4

Q ss_pred             eEEEEEcCCCCeeEEEecCCccEEEEEEeeC-CCeEEEEecCCCeEEEEeCCCCce--eeeccCcc-cceEEEEEcCCCC
Q 007283          126 LVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS-RPFRIATCGEDFLVNFYEGPPFKF--KLSHRGHS-NFVNCVRFSPDGS  201 (609)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~i~t~~~d~~i~~~~~~~~~~--~~~~~~h~-~~v~~l~~s~dg~  201 (609)
                      -+++++|.++..+..|+++..-+..+.|... ++..+.+|+.||.|++||.+....  .+.+.+|. .+..|++..-.++
T Consensus        51 sv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~  130 (376)
T KOG1188|consen   51 SVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKN  130 (376)
T ss_pred             eEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCC
Confidence            3789999999999999999999999999764 666799999999999999876543  33345555 4667777765677


Q ss_pred             EEEEEeC----CCcEEEEeCCCCcc-ccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEec
Q 007283          202 KFISVSS----DKKGIIYDGKTADK-IGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       202 ~l~s~~~----d~~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                      .+++|+.    +-.+.+||++..+. +..+.  ..|..-|++++|+|.. .+|+|||.||.+.+||+..++..       
T Consensus       131 ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~--eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee-------  201 (376)
T KOG1188|consen  131 IIACGTELTRSDASVVLWDVRSEQQLLRQLN--ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE-------  201 (376)
T ss_pred             eEEeccccccCceEEEEEEeccccchhhhhh--hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch-------
Confidence            7887753    66789999998877 66654  4799999999999954 68999999999999998642110       


Q ss_pred             cCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          276 PSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                              +.                               ....-.|...|..+.|+...-+.+.+-++..+..+|+++
T Consensus       202 --------Da-------------------------------L~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele  242 (376)
T KOG1188|consen  202 --------DA-------------------------------LLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELE  242 (376)
T ss_pred             --------hh-------------------------------HHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEcc
Confidence                    00                               001112444566677764433468888899999999776


Q ss_pred             cc
Q 007283          356 IG  357 (609)
Q Consensus       356 ~~  357 (609)
                      .+
T Consensus       243 ~~  244 (376)
T KOG1188|consen  243 DG  244 (376)
T ss_pred             CC
Confidence            54

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.65  E-value=1e-14  Score=148.54  Aligned_cols=213  Identities=19%  Similarity=0.285  Sum_probs=144.2

Q ss_pred             cCceeEEeecCCCCeEEEeC----CCEEEEEeCCCCcc--ccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEc--C
Q 007283           16 RGRGILISGHPKSNSILYTN----GRSVIILDLSNPLQ--VSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWG--A   86 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~--~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd--~   86 (609)
                      ++......++|||+.|+|..    ...+++||+.++..  +..+.+|   ...++|||||++|+.++ .+|.++||.  .
T Consensus       203 ~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~  279 (429)
T PRK01742        203 SQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLNIYVMGA  279 (429)
T ss_pred             CCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEEEEEEEC
Confidence            34456889999999999873    24799999987653  2223333   45789999999998754 688877774  4


Q ss_pred             CCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecC
Q 007283           87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE  166 (609)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~  166 (609)
                      .+++  ...+..+...+..++|+|||++|+.+++..+.  .++|.++.........++..  ...+|+|++.. ++..+.
T Consensus       280 ~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~--~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~-ia~~~~  352 (429)
T PRK01742        280 NGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS--PQVYRMSASGGGASLVGGRG--YSAQISADGKT-LVMING  352 (429)
T ss_pred             CCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCC--ceEEEEECCCCCeEEecCCC--CCccCCCCCCE-EEEEcC
Confidence            4443  23455566678899999999999888754332  45676654322112223433  45789999986 555555


Q ss_pred             CCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCccccccCcCCCCccceEEEEECCC
Q 007283          167 DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG--KTADKIGELSPEDGHKGSVYAVSWSPD  244 (609)
Q Consensus       167 d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~--~~~~~~~~~~~~~~h~~~V~~l~~spd  244 (609)
                      +..+ .||..+++.......+  ....+.|+|||++|++++.++...+|+.  .++..+..+.   +|.+.+..++|+|-
T Consensus       353 ~~i~-~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~---~~~g~~~~p~wsp~  426 (429)
T PRK01742        353 DNVV-KQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLP---GSDGQVKFPAWSPY  426 (429)
T ss_pred             CCEE-EEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEcc---CCCCCCCCcccCCC
Confidence            6544 4787766544332222  2356789999999999999998887764  3455555553   67788899999985

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=7.2e-14  Score=127.89  Aligned_cols=298  Identities=16%  Similarity=0.178  Sum_probs=196.4

Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC------Cceeeec-cCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP------FKFKLSH-RGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~------~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      .+.+|.+-|..+.|+.++.+ +++||.|....+|..+.      .|.+... ..|...|.|++|.....++.+|+.++++
T Consensus        51 D~~~H~GCiNAlqFS~N~~~-L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~V  129 (609)
T KOG4227|consen   51 DVREHTGCINALQFSHNDRF-LASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTV  129 (609)
T ss_pred             hhhhhccccceeeeccCCeE-EeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCccee
Confidence            45689999999999999775 99999999999997432      2333222 3466899999999999999999999999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCC-CCceEEEeccCCCCCccceEEEEEE
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN-HGKLKKTLTPSGSGGVDDMLVGCLW  291 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      +..|+++.+.+..+.. ....+.|+.+..+|....|++.+.++.|.+||.+..+ .+.+                     
T Consensus       130 I~HDiEt~qsi~V~~~-~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~---------------------  187 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANE-NNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISL---------------------  187 (609)
T ss_pred             Eeeecccceeeeeecc-cCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCce---------------------
Confidence            9999999888766532 2334589999999999999999999999999987422 1100                     


Q ss_pred             cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccccee
Q 007283          292 QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK  371 (609)
Q Consensus       292 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~  371 (609)
                           ++..                     ...+....+-|++..+.++++.+..+-+-+|+........++.       
T Consensus       188 -----~~~A---------------------N~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~-------  234 (609)
T KOG4227|consen  188 -----VLPA---------------------NSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR-------  234 (609)
T ss_pred             -----eeec---------------------CCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh-------
Confidence                 0000                     0112233455667778899999998889999754321100000       


Q ss_pred             EeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCcee
Q 007283          372 CFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVT  451 (609)
Q Consensus       372 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (609)
                        ....               .++..                                                 .....
T Consensus       235 --~~~~---------------~L~~~-------------------------------------------------~~~~M  248 (609)
T KOG4227|consen  235 --SMFK---------------GLPQE-------------------------------------------------NTEWM  248 (609)
T ss_pred             --hccc---------------cCccc-------------------------------------------------chhhh
Confidence              0000               00000                                                 00011


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEe-cCC-------CceEEEEECCCCCEEEEEeCCCeEEEEEccC-
Q 007283          452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE-KHR-------GAVSVIRYSPDVSMFASGDVNREAIVWDRVS-  522 (609)
Q Consensus       452 ~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~-~h~-------~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~-  522 (609)
                      .+-++|+|..+.+--.-..=.+||+-+..+.   +++ .|.       -.+.++.|-.|.. +++||.+-.+++|.+-. 
T Consensus       249 ~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~---V~k~D~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~  324 (609)
T KOG4227|consen  249 GSLWSPSGNQFMSIRRGKCPLYFDFISQRCF---VLKSDHNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRA  324 (609)
T ss_pred             heeeCCCCCeehhhhccCCCEEeeeecccce---eEeccCCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCC
Confidence            2334555555444333333344444332221   111 111       1466777865544 99999999999997421 


Q ss_pred             ---Cc------------------eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          523 ---RE------------------VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       523 ---~~------------------~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                         ..                  ..+..+.+|..-++.+.|+|...+|++++..+.+++|.-
T Consensus       325 ~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  325 NDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             ccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcceEeccchhhheecccc
Confidence               00                  012346789999999999999999999999999999964

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.63  E-value=7.1e-14  Score=143.30  Aligned_cols=285  Identities=17%  Similarity=0.181  Sum_probs=193.5

Q ss_pred             ceeEEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCC---CCcEEEEECC--CCCEEEEEeCCCcEEEEcCC-CC-
Q 007283           18 RGILISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHA---YPATVARFSP--NGEWIASADVSGTVRIWGAH-ND-   89 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~---~~v~~~~~sp--~g~~las~~~d~~i~vWd~~-~~-   89 (609)
                      .|-.+.+||=...++...+ ..+.+||-+.++.+..|..+.   ..|+.+.+-.  |..++.+|+.||.||||+-. +. 
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence            4558889988877777664 799999999988877776443   4688888743  56789999999999999644 32 


Q ss_pred             -c-eeeEEEeeccc-------ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCe
Q 007283           90 -H-VLKKEFRVLSG-------RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPF  159 (609)
Q Consensus        90 -~-~~~~~~~~~~~-------~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~  159 (609)
                       + .+...+...++       .-.-+.|-....+|++.||-   ..+|+|+-+.......+. +...-|+++.-+-....
T Consensus      1146 ~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~---r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1146 KKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDV---RSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             CCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCe---eEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence             1 12222222211       11446788877788888763   367888777766666554 34455777765444445


Q ss_pred             EEEEecCCCeEEEEeCCC---CceeeeccCcccc--eEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCc
Q 007283          160 RIATCGEDFLVNFYEGPP---FKFKLSHRGHSNF--VNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHK  233 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~---~~~~~~~~~h~~~--v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~  233 (609)
                      +|+.|-.||.+++||.+.   ...+...+.|...  |..+.+.+.|- .|++|+.||.|.+||.+.......+.. ..|.
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i-v~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI-VAHW 1301 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCccccccee-eecc
Confidence            799999999999999542   2345667888877  99999998776 499999999999999987543333322 2333


Q ss_pred             --c-ceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCC--CCCccceEEEEEEcC--CeEEEEEcCCcEE
Q 007283          234 --G-SVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG--SGGVDDMLVGCLWQN--DFLVIVSLGGTIS  306 (609)
Q Consensus       234 --~-~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~g~i~  306 (609)
                        | ..+++..|++...+|+|+. +.|+||++....    +..+....  -+.-.....+..+.+  -++++++.|.++.
T Consensus      1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~----l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~ 1376 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ----LNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVS 1376 (1387)
T ss_pred             ccCccceeeeeccCCCeeeecCc-ceEEEEecChhh----hcccccCcccccCcCCCcceeeecchhHhhhhccCCceEE
Confidence              3 5999999999999999998 999999986432    22221110  000000112223333  3677788888899


Q ss_pred             EEeCC
Q 007283          307 IFSAN  311 (609)
Q Consensus       307 ~~~~~  311 (609)
                      +|...
T Consensus      1377 iYs~~ 1381 (1387)
T KOG1517|consen 1377 IYSCE 1381 (1387)
T ss_pred             EeecC
Confidence            88754

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.62  E-value=4.1e-13  Score=135.67  Aligned_cols=285  Identities=14%  Similarity=0.155  Sum_probs=175.0

Q ss_pred             CcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      +.+.+|+.+....-...   -.-...|+++.|+|. ..+++.|+.+|.|.+||++..... ....               
T Consensus       222 ~~~~vW~~~~p~~Pe~~---~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~-~~s~---------------  282 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELV---LESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDT-PPSG---------------  282 (555)
T ss_pred             ceEEEEecCCCCCceEE---EecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCC-CCcc---------------
Confidence            46889998765221111   123568999999995 457778888999999998742110 0000               


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec-CCCCEEEEEecCCcEEEEecCccccceeccccc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN-IDPKVILSSSYDGLIVKWIQGIGYGGKLQRKEN  367 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~  367 (609)
                                                 .......|...++.+.+.. ..+.-+++++.||.|..|+.+.-..   .    
T Consensus       283 ---------------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~---P----  328 (555)
T KOG1587|consen  283 ---------------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSL---P----  328 (555)
T ss_pred             ---------------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeecccccc---c----
Confidence                                       0011234677777776652 2234588888899999995432100   0    


Q ss_pred             cceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccC
Q 007283          368 SQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLR  447 (609)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (609)
                      .....        .           +.                      ..+                    ........
T Consensus       329 ~e~~~--------~-----------~~----------------------~~~--------------------~~~~~~~~  347 (555)
T KOG1587|consen  329 VEGLL--------L-----------ES----------------------KKH--------------------KGQQSSKA  347 (555)
T ss_pred             hhhcc--------c-----------cc----------------------ccc--------------------cccccccc
Confidence            00000        0           00                      000                    00000001


Q ss_pred             CceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeee------eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283          448 FPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTE------EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDR  520 (609)
Q Consensus       448 ~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~------~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~  520 (609)
                      ..+++++|.| +-..+++|+.+|.|.-=.-.+..-..      ......|.++|.++.++|-+..+...+.|-+++||..
T Consensus       348 ~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~  427 (555)
T KOG1587|consen  348 VGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSE  427 (555)
T ss_pred             cceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccc
Confidence            2355566655 44568899999988663222111111      1245668899999999999876666666999999985


Q ss_pred             cCCceEEeeecCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcC-CCeEEEEeCC
Q 007283          521 VSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTD-EHSVVSSGED  598 (609)
Q Consensus       521 ~~~~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~-~~~l~s~s~D  598 (609)
                      ......+..+..+...|++++|||-- ..++++..||.|-+||+......-.....-+....+.+.|+. +..|+.|.+-
T Consensus       428 ~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~  507 (555)
T KOG1587|consen  428 DVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDAN  507 (555)
T ss_pred             cCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCC
Confidence            53333344455677889999999964 578899999999999985322111111122355566777885 7888899999


Q ss_pred             CcEEEEEccC
Q 007283          599 ACVRVWRLTP  608 (609)
Q Consensus       599 ~~i~~W~~~~  608 (609)
                      |++.+|+|.+
T Consensus       508 G~~~~~~l~~  517 (555)
T KOG1587|consen  508 GTTHILKLSE  517 (555)
T ss_pred             CcEEEEEcCc
Confidence            9999999953

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.61  E-value=4.2e-13  Score=139.95  Aligned_cols=177  Identities=15%  Similarity=0.176  Sum_probs=120.1

Q ss_pred             CccccccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcc
Q 007283           47 PLQVSIYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS  125 (609)
Q Consensus        47 ~~~~~~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~  125 (609)
                      |..+..+..|+..|..++.++ ++.+++|||.||+||+|+...-....      ...=..+.|+|.              
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s~rS~ltys~~-------------- 1097 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG------GSARSELTYSPE-------------- 1097 (1431)
T ss_pred             ceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc------ceeeeeEEEecc--------------
Confidence            445566888998888888765 55999999999999999875321100      000112223332              


Q ss_pred             eEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-------ceeee--ccCcccceEEEEE
Q 007283          126 LVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-------KFKLS--HRGHSNFVNCVRF  196 (609)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-------~~~~~--~~~h~~~v~~l~~  196 (609)
                                         ..++..+..-+.+. .+|.++.||.|.+..++--       ...+.  ..+....|.+-+|
T Consensus      1098 -------------------~sr~~~vt~~~~~~-~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1098 -------------------GSRVEKVTMCGNGD-QFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAF 1157 (1431)
T ss_pred             -------------------CCceEEEEeccCCC-eEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecc
Confidence                               23445555555555 4888899999888865431       11111  2222234555566


Q ss_pred             cCC-CC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          197 SPD-GS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       197 s~d-g~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      ... +. .++.+..-+.+..||.+....+.++..... .|.|++++.+|-+.+++.|+..|.+-+||++.
T Consensus      1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~-hG~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR-HGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred             cccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-ccceeEEEecCCceEEEEecCCceEEEEEeec
Confidence            544 44 678888899999999998887776654333 47899999999999999999999999999973

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.59  E-value=1.3e-13  Score=123.34  Aligned_cols=163  Identities=19%  Similarity=0.302  Sum_probs=131.6

Q ss_pred             EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC---CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           96 FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG---TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        96 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      +....++|++.+|++|+..++.+-.+.+   +.++.+...   ...++++.|...|+.++|.|..+ +|++|+.|..-.+
T Consensus         6 ~~~~~~pitchAwn~drt~iAv~~~~~e---vhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn-rIvtcs~drnayV   81 (361)
T KOG1523|consen    6 FHRLLEPITCHAWNSDRTQIAVSPNNHE---VHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN-RIVTCSHDRNAYV   81 (361)
T ss_pred             eeeccCceeeeeecCCCceEEeccCCce---EEEEEecCCCCceeceehhhhCcceeEEeecCCCC-ceeEccCCCCccc
Confidence            4445678999999999999998766543   456666544   35778999999999999999986 6999999999999


Q ss_pred             EeCC---CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC-cCCCCccceEEEEECCCCCeE
Q 007283          173 YEGP---PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS-PEDGHKGSVYAVSWSPDGKQV  248 (609)
Q Consensus       173 ~~~~---~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~h~~~V~~l~~spd~~~l  248 (609)
                      |..+   +++....+..+.+.++++.|+|.+++||+|+....|.||-.+..+....-+ ..+.+.+.|++++|+|++-+|
T Consensus        82 w~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLl  161 (361)
T KOG1523|consen   82 WTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLL  161 (361)
T ss_pred             cccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCccee
Confidence            9763   345556677899999999999999999999999999998766554431100 112467889999999999999


Q ss_pred             EEEeCCCcEEEeec
Q 007283          249 LTASADKSAKVWDI  262 (609)
Q Consensus       249 ~s~s~d~~i~iwd~  262 (609)
                      +.||.|+..|++..
T Consensus       162 aaGs~D~k~rVfSa  175 (361)
T KOG1523|consen  162 AAGSTDGKCRVFSA  175 (361)
T ss_pred             cccccCcceeEEEE
Confidence            99999999999964

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=3.8e-14  Score=136.05  Aligned_cols=205  Identities=20%  Similarity=0.334  Sum_probs=161.6

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC------c-eeeEEEeecccceeEEEECCCCCEEEEEECCCCc
Q 007283           52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND------H-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK  124 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~------~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~  124 (609)
                      .+..|-+.|+.++|.|...-|++++.|+++++|.++..      . .-..+|+.|.++|.+++.++.++++.+.|-+.  
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg--  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG--  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCc--
Confidence            35678889999999999999999999999999999321      1 12357899999999999999999999987443  


Q ss_pred             ceEEEEEcC-------C---CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce-eee-cc-------
Q 007283          125 SLVRAFMWD-------S---GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF-KLS-HR-------  185 (609)
Q Consensus       125 ~~~~~~~~~-------~---~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~-~~~-~~-------  185 (609)
                       .++.|...       .   ......+.||.+.|+.+++|+... ++++|+.|++++.|+...... .+. ..       
T Consensus       367 -~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Pls  444 (577)
T KOG0642|consen  367 -TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLS  444 (577)
T ss_pred             -eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCccccCCccccCCcce
Confidence             35555222       1   123456889999999999998876 599999999999997421111 000 00       


Q ss_pred             --------Cc----------------------------------ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007283          186 --------GH----------------------------------SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI  223 (609)
Q Consensus       186 --------~h----------------------------------~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~  223 (609)
                              .|                                  ...++-+..+|.+.+..++..|+.|+++|..+++.+
T Consensus       445 vd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  445 VDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             EeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence                    00                                  024566777888888899999999999999999988


Q ss_pred             cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       224 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ....   .|...|+++++.|+|-+|++++.|+.+++|.+.
T Consensus       525 ~s~~---a~~~svtslai~~ng~~l~s~s~d~sv~l~kld  561 (577)
T KOG0642|consen  525 HSMV---AHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLD  561 (577)
T ss_pred             hhee---eccceecceeecCCCceEEeecCCceeehhhcc
Confidence            7663   789999999999999999999999999999875

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=4.3e-14  Score=133.19  Aligned_cols=301  Identities=22%  Similarity=0.278  Sum_probs=206.7

Q ss_pred             eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC--CCeEEEEeCCCcEEE
Q 007283          182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD--GKQVLTASADKSAKV  259 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~d~~i~i  259 (609)
                      ..+.+|.+.|+.|.|+..|..|+++++|..+.+||+..++....+  ..||...|....|-|.  .+.+++++.||.+++
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceee
Confidence            456789999999999999999999999999999999988876655  3589999999999884  467999999999998


Q ss_pred             eecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCE
Q 007283          260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKV  339 (609)
Q Consensus       260 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  339 (609)
                      =.+...  +....                                            ...+.-|.+.|.-++..+..+.-
T Consensus       214 s~i~~t--~~~e~--------------------------------------------t~rl~~h~g~vhklav~p~sp~~  247 (559)
T KOG1334|consen  214 SEILET--GYVEN--------------------------------------------TKRLAPHEGPVHKLAVEPDSPKP  247 (559)
T ss_pred             eeeccc--cceec--------------------------------------------ceecccccCccceeeecCCCCCc
Confidence            654321  11100                                            11233477777778877777889


Q ss_pred             EEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeecc
Q 007283          340 ILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALH  419 (609)
Q Consensus       340 ~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (609)
                      +.|++.|+.+.-.++........       +.|          -.                                 .+
T Consensus       248 f~S~geD~~v~~~Dlr~~~pa~~-------~~c----------r~---------------------------------~~  277 (559)
T KOG1334|consen  248 FLSCGEDAVVFHIDLRQDVPAEK-------FVC----------RE---------------------------------AD  277 (559)
T ss_pred             ccccccccceeeeeeccCCccce-------eee----------ec---------------------------------cC
Confidence            99999999987665432210000       000          00                                 00


Q ss_pred             CCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEEecCCeeee-----eEEEecC---
Q 007283          420 YPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS-EAIIGSQDGKLRVYSIRGDTLTE-----EAVLEKH---  490 (609)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~~gs~dg~i~iw~~~~~~~~~-----~~~~~~h---  490 (609)
                      .+.                        .-....+++.|-.. .+++|+.|.-+|+||.+.-....     ...+..|   
T Consensus       278 ~~~------------------------~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~  333 (559)
T KOG1334|consen  278 EKE------------------------RVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVE  333 (559)
T ss_pred             Ccc------------------------ceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccc
Confidence            000                        01235567777555 78999999999999975432110     1111222   


Q ss_pred             --CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc-----------eEEee-ecCCC--CceEEEEE-CCCCcEEEEEe
Q 007283          491 --RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE-----------VKLKN-MLYHT--ARINCLAW-SPNNSMVATGS  553 (609)
Q Consensus       491 --~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~-----------~~~~~-~~~h~--~~i~~l~~-s~d~~~l~s~s  553 (609)
                        .-.|+++.|+.++.-+.++..|-.|++++-.-+.           ...+. .++|.  ..|.++-| =|...|+++||
T Consensus       334 d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGS  413 (559)
T KOG1334|consen  334 DDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGS  413 (559)
T ss_pred             cCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecC
Confidence              3468999999888888888889999999522111           11222 56664  45888876 57889999999


Q ss_pred             CCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          554 LDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       554 ~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      .=|-|.+|+-...  +++....|....|+|+-=. --..|+|+|-|.-||||.=
T Consensus       414 DCGhIFiW~K~t~--eii~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  414 DCGHIFIWDKKTG--EIIRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             ccceEEEEecchh--HHHHHhhcccceEeccCCCCCCchhhccCCccceeeecC
Confidence            9999999996542  3333444555588888855 3457899999999999963

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.57  E-value=5.1e-13  Score=117.91  Aligned_cols=236  Identities=18%  Similarity=0.235  Sum_probs=164.1

Q ss_pred             eeEEeecCCCC----eEEEeCCCEEEEEeCCCCcc----ccccc-----cCCCCcEEEEECC-CCCEEEEEeCCCcEEEE
Q 007283           19 GILISGHPKSN----SILYTNGRSVIILDLSNPLQ----VSIYG-----EHAYPATVARFSP-NGEWIASADVSGTVRIW   84 (609)
Q Consensus        19 ~~~~~~~~~~~----~l~~~~~~~~~i~~~~~~~~----~~~~~-----~h~~~v~~~~~sp-~g~~las~~~d~~i~vW   84 (609)
                      ++.+.+.|+..    -|+.+.+.-+++|.......    ...+.     .|..++++..|+. +-++|.+.|-|-|+.||
T Consensus        99 ~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiW  178 (364)
T KOG0290|consen   99 VTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIW  178 (364)
T ss_pred             ccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEE
Confidence            34788888763    23445567899999874222    12232     3445677777775 67899999999999999


Q ss_pred             cCCCCc--eeeEEEeecccceeEEEECCCCC-EEEEEECCCCcceEEEEEcCCCC---eeEEEecCCccEEEEEEeeCCC
Q 007283           85 GAHNDH--VLKKEFRVLSGRIDDLQWSPDGL-RIVACGDGKGKSLVRAFMWDSGT---NVGEFDGHSRRVLSCAFKPSRP  158 (609)
Q Consensus        85 d~~~~~--~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~h~~~v~~~~~~p~~~  158 (609)
                      |++++.  .++.++=.|.++|..++|+.++. .++++|.+..   +|.+++..-.   .+.+-.....+...+++.++++
T Consensus       179 die~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS---vRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDp  255 (364)
T KOG0290|consen  179 DIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS---VRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDP  255 (364)
T ss_pred             EEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc---EEEEEecccccceEEecCCCCCCcceeeccCcCCc
Confidence            999863  36778888999999999999876 4555664432   5666665422   2222222246788899999998


Q ss_pred             eEEEEecCCC-eEEEEeCC-CCceeeeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcc---ccccCcCCCC
Q 007283          159 FRIATCGEDF-LVNFYEGP-PFKFKLSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADK---IGELSPEDGH  232 (609)
Q Consensus       159 ~~i~t~~~d~-~i~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~h  232 (609)
                      ..+||-..|. .+.+.|.+ +......+++|...|+.++|.|.. ..|++|++|..+.|||+...-.   ...+... ..
T Consensus       256 nymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay-~a  334 (364)
T KOG0290|consen  256 NYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAY-TA  334 (364)
T ss_pred             hHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhh-hc
Confidence            8888877664 56777765 455677899999999999999984 4899999999999999764322   1111111 23


Q ss_pred             ccceEEEEECCCC-CeEEEEeCCCcEEE
Q 007283          233 KGSVYAVSWSPDG-KQVLTASADKSAKV  259 (609)
Q Consensus       233 ~~~V~~l~~spd~-~~l~s~s~d~~i~i  259 (609)
                      .+.|+.+.|+|.. ..++.+. ++++.+
T Consensus       335 ~~EVNqi~Ws~~~~Dwiai~~-~kklei  361 (364)
T KOG0290|consen  335 GGEVNQIQWSSSQPDWIAICF-GKKLEI  361 (364)
T ss_pred             cceeeeeeecccCCCEEEEEe-cCeeeE
Confidence            5689999999754 4555553 444443

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.57  E-value=1.9e-13  Score=122.39  Aligned_cols=204  Identities=17%  Similarity=0.244  Sum_probs=156.3

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc-C
Q 007283           57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDH--VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW-D  133 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~-~  133 (609)
                      .++|+|.||++|+..+|.+-....|-|+.....+  ...+++..|...|+.+.|+|.+.+|++++.+++.   .+|.. +
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna---yVw~~~~   86 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA---YVWTQPS   86 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc---cccccCC
Confidence            4689999999999999999999999999876554  3446788899999999999999999999977653   23333 2


Q ss_pred             CC--CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eCCC--CceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283          134 SG--TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPP--FKFKLSHRGHSNFVNCVRFSPDGSKFISVS  207 (609)
Q Consensus       134 ~~--~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  207 (609)
                      .+  +....+..+.+.++++.|+|.... ||+|+..+.|-++  +.++  +-.+..-+.++..|+++.|+|++-+|+.|+
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enk-FAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs  165 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENK-FAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS  165 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCce-EEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence            22  334566788999999999999874 9999999887765  3332  233334456788999999999999999999


Q ss_pred             CCCcEEEEeCC-----CCcc---------ccc-cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          208 SDKKGIIYDGK-----TADK---------IGE-LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       208 ~d~~i~iwd~~-----~~~~---------~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      .|+..+++...     +...         ... +.+.....+.|..+.|+|+|..|+-.+.|.++.+-|...
T Consensus       166 ~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  166 TDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             cCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            99999998632     1100         000 011113457899999999999999999999999988653

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.57  E-value=1.2e-12  Score=132.30  Aligned_cols=272  Identities=18%  Similarity=0.201  Sum_probs=174.4

Q ss_pred             eEEEEeCCCC-ceeeeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcc--ccccCc-CCCCccceEEEEECC
Q 007283          169 LVNFYEGPPF-KFKLSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADK--IGELSP-EDGHKGSVYAVSWSP  243 (609)
Q Consensus       169 ~i~~~~~~~~-~~~~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~--~~~~~~-~~~h~~~V~~l~~sp  243 (609)
                      .+.+|+.... .....+ .-...|.|+.|+|.. ..+|.|..+|.|.+||.+.+..  ...+.. ...|...|+.+.|-.
T Consensus       223 ~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~  301 (555)
T KOG1587|consen  223 VLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQ  301 (555)
T ss_pred             eEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEec
Confidence            5788886544 222233 235679999999974 5778888999999999987765  222221 236889999999987


Q ss_pred             CCCe--EEEEeCCCcEEEeecccCCCCc---eEEEeccCCCC-CccceEEEEEE---cCCeEEEEEcCCcEEEEeCCCCC
Q 007283          244 DGKQ--VLTASADKSAKVWDISEDNHGK---LKKTLTPSGSG-GVDDMLVGCLW---QNDFLVIVSLGGTISIFSANDLE  314 (609)
Q Consensus       244 d~~~--l~s~s~d~~i~iwd~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~~~g~i~~~~~~~~~  314 (609)
                      +..-  ++++|.||.|..|+++.-....   +.......+.. .-........+   .+..+++++..|.|..-+-....
T Consensus       302 ~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  302 NEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             cCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCc
Confidence            6554  9999999999999875321100   00000000000 00011112222   25577888888887663222111


Q ss_pred             -------CCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccc
Q 007283          315 -------KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDN  387 (609)
Q Consensus       315 -------~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  387 (609)
                             +.......|.+.|.++.+++.....+++++ |-++++|.....         ..++..               
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~---------~~Pl~~---------------  436 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVI---------ASPLLS---------------  436 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCC---------CCcchh---------------
Confidence                   112245668889999998877777888888 999999954310         000000               


Q ss_pred             eEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCC-CEEEEEe
Q 007283          388 KIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDG-SEAIIGS  466 (609)
Q Consensus       388 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g-~~l~~gs  466 (609)
                                                                             .......++++++||-- ..|+++.
T Consensus       437 -------------------------------------------------------~~~~~~~v~~vaWSptrpavF~~~d  461 (555)
T KOG1587|consen  437 -------------------------------------------------------LDSSPDYVTDVAWSPTRPAVFATVD  461 (555)
T ss_pred             -------------------------------------------------------hhhccceeeeeEEcCcCceEEEEEc
Confidence                                                                   00001226778888844 4688889


Q ss_pred             CCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283          467 QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV  521 (609)
Q Consensus       467 ~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~  521 (609)
                      .||.|.+||+...........+-+....+.+.|+++|+.++.|+..|++.+|++.
T Consensus       462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~  516 (555)
T KOG1587|consen  462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS  516 (555)
T ss_pred             CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence            9999999999765544434444445667888899999999999999999999974

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.56  E-value=9.9e-12  Score=118.75  Aligned_cols=238  Identities=13%  Similarity=0.188  Sum_probs=154.6

Q ss_pred             eeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECC---------CCCEEEEEe
Q 007283            6 ETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSP---------NGEWIASAD   76 (609)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp---------~g~~las~~   76 (609)
                      +|-.|.-.-+.-..+.+.+......+..+.+..+.+|.-...........-.+.|...-+ |         ....++-++
T Consensus         4 k~~~~~k~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h-~~~rs~~~g~~~d~~~i~s   82 (737)
T KOG1524|consen    4 KTRICKKNRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMH-LGGRSSGGGKGSDTLLICS   82 (737)
T ss_pred             chhhhhccccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCcccc-ccccccCCCCCcceEEEEc
Confidence            344454444333445666666655555556666666554333332333222333322211 1         123566677


Q ss_pred             CCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-EEecCCccEEEEEEee
Q 007283           77 VSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-EFDGHSRRVLSCAFKP  155 (609)
Q Consensus        77 ~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p  155 (609)
                      .||.+.|-.- .+++ .+....|.+.+.+-+|+|||.-|+++|.+.     .+.+|.....+. ++.....+|+|++|.|
T Consensus        83 ~DGkf~il~k-~~rV-E~sv~AH~~A~~~gRW~~dGtgLlt~GEDG-----~iKiWSrsGMLRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   83 NDGRFVILNK-SARV-ERSISAHAAAISSGRWSPDGAGLLTAGEDG-----VIKIWSRSGMLRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             CCceEEEecc-cchh-hhhhhhhhhhhhhcccCCCCceeeeecCCc-----eEEEEeccchHHHHHhhcCceeEEEEECC
Confidence            8888777653 3333 245678899999999999999999998654     255676554433 2334456899999999


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccc
Q 007283          156 SRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS  235 (609)
Q Consensus       156 ~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  235 (609)
                      +...++.+.+..  +.+-...+.......+.|.+-|.++.|++..+.+++|+.|-..+|||........    ...|.-+
T Consensus       156 ~S~~vl~c~g~h--~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~----S~~~ey~  229 (737)
T KOG1524|consen  156 NSNSIVFCQGGH--ISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFT----SAAEEYA  229 (737)
T ss_pred             CCCceEEecCCe--EEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCccccc----CChhccc
Confidence            988755544432  3343444444456678899999999999999999999999999999976544332    2368889


Q ss_pred             eEEEEECCCCCeEEEEeCCCcEEE
Q 007283          236 VYAVSWSPDGKQVLTASADKSAKV  259 (609)
Q Consensus       236 V~~l~~spd~~~l~s~s~d~~i~i  259 (609)
                      |++++|.|| +.++.+|. +++|+
T Consensus       230 ITSva~npd-~~~~v~S~-nt~R~  251 (737)
T KOG1524|consen  230 ITSVAFNPE-KDYLLWSY-NTARF  251 (737)
T ss_pred             eeeeeeccc-cceeeeee-eeeee
Confidence            999999999 66666663 46663

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=1.2e-13  Score=131.97  Aligned_cols=213  Identities=21%  Similarity=0.309  Sum_probs=158.3

Q ss_pred             cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCC-CCEEEEEECCCCcceE
Q 007283           49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPD-GLRIVACGDGKGKSLV  127 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~~  127 (609)
                      +...+.||.+-|+|++|+.||.+|||||.|-.+.|||.-..+.+...-++|...|.++.|=|. +.+++..|.+.  +.+
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgD--k~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGD--KLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCc--ceE
Confidence            345688999999999999999999999999999999998766555556789999999999995 56666666543  468


Q ss_pred             EEEEcCC----------CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-ee---------eeccCc
Q 007283          128 RAFMWDS----------GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-FK---------LSHRGH  187 (609)
Q Consensus       128 ~~~~~~~----------~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-~~---------~~~~~h  187 (609)
                      ++++.+.          ......+..|.++|..++-.|+++..+-+++.||+++-+|++... +.         ..+.+.
T Consensus       120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~  199 (758)
T KOG1310|consen  120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ  199 (758)
T ss_pred             EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence            8888874          233456778999999999999999999999999999999975321 11         112223


Q ss_pred             ccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCC--------Cc----------cccccCcCCCCc-----------cceE
Q 007283          188 SNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKT--------AD----------KIGELSPEDGHK-----------GSVY  237 (609)
Q Consensus       188 ~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~--------~~----------~~~~~~~~~~h~-----------~~V~  237 (609)
                      .-...|+..+|... +||+|+.|.-.++||.+.        +.          ++..+.  .+|-           -.++
T Consensus       200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~--p~hlkn~~gn~~~~~~~~t  277 (758)
T KOG1310|consen  200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFS--PGHLKNSQGNLDRYITCCT  277 (758)
T ss_pred             hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheec--CccccCcccccccceeeeE
Confidence            34578999999854 889999999999999321        11          111111  1222           1257


Q ss_pred             EEEECCCCCeEEEEeCCCcEEEeecccC
Q 007283          238 AVSWSPDGKQVLTASADKSAKVWDISED  265 (609)
Q Consensus       238 ~l~~spd~~~l~s~s~d~~i~iwd~~~~  265 (609)
                      .+.|+|+|.-|+..-..-+|+++|+..+
T Consensus       278 ~vtfnpNGtElLvs~~gEhVYlfdvn~~  305 (758)
T KOG1310|consen  278 YVTFNPNGTELLVSWGGEHVYLFDVNED  305 (758)
T ss_pred             EEEECCCCcEEEEeeCCeEEEEEeecCC
Confidence            7889999976555555568999998753

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=5.7e-14  Score=132.40  Aligned_cols=293  Identities=20%  Similarity=0.250  Sum_probs=191.9

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCC--CCEEEEEECCCCcceEEE
Q 007283           52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~  129 (609)
                      .+.+|.+-|+.+-|...|..|+||+.|..|.+||...+.....-..+|...|....|-|.  .+.+++++.++-   +++
T Consensus       137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgq---vr~  213 (559)
T KOG1334|consen  137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQ---VRV  213 (559)
T ss_pred             cccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCc---eee
Confidence            477999999999999999999999999999999999876544334567777877778883  456676653321   222


Q ss_pred             EEc-CCCC--eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC----ceeeeccCccc---ceEEEEEcCC
Q 007283          130 FMW-DSGT--NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF----KFKLSHRGHSN---FVNCVRFSPD  199 (609)
Q Consensus       130 ~~~-~~~~--~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~----~~~~~~~~h~~---~v~~l~~s~d  199 (609)
                      -.. .++.  ...-+..|.++|..++..|+.++.|.+||.|+.++-.|....    +.. .-..+..   ....++..|-
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~-cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV-CREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee-eeccCCccceeeeeEecCCC
Confidence            222 2222  133456899999999999999999999999998887664332    121 1122232   6788899987


Q ss_pred             CC-EEEEEeCCCcEEEEeCCCCccc------cccCc---CCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCC-
Q 007283          200 GS-KFISVSSDKKGIIYDGKTADKI------GELSP---EDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG-  268 (609)
Q Consensus       200 g~-~l~s~~~d~~i~iwd~~~~~~~------~~~~~---~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~-  268 (609)
                      .. .+++++.|...++||.+.-..-      ..+-+   .....-.|++++|+.++.-|++.=.|-.|+++.-.-+ .+ 
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~-~G~  371 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG-DGS  371 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc-cCC
Confidence            65 8999999999999996543221      11111   0112346999999977665555556778999853211 11 


Q ss_pred             ---------ceEEE-eccCCCCCccceEEEE-EEc--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC
Q 007283          269 ---------KLKKT-LTPSGSGGVDDMLVGC-LWQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI  335 (609)
Q Consensus       269 ---------~~~~~-~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  335 (609)
                               ...+. +....+   ...+-++ +|.  ..++++++.-|.|.+|+-.... .+..+.+...-|.|+.-++-
T Consensus       372 ~p~~~s~~~~~~k~vYKGHrN---~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~e-ii~~MegDr~VVNCLEpHP~  447 (559)
T KOG1334|consen  372 EPDPSSPREQYVKRVYKGHRN---SRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGE-IIRFMEGDRHVVNCLEPHPH  447 (559)
T ss_pred             CCCCCcchhhccchhhccccc---ccccceeeeccCccceEEecCccceEEEEecchhH-HHHHhhcccceEeccCCCCC
Confidence                     11111 111111   0111222 233  4588888999999999854322 22234555556777765544


Q ss_pred             CCCEEEEEecCCcEEEEec
Q 007283          336 DPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       336 ~~~~~~t~s~dg~i~~W~~  354 (609)
                      . -++++++.|..|++|-.
T Consensus       448 ~-PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  448 L-PVLASSGIDHDVKIWTP  465 (559)
T ss_pred             C-chhhccCCccceeeecC
Confidence            3 37999999999999965

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.55  E-value=6.7e-11  Score=108.38  Aligned_cols=227  Identities=13%  Similarity=0.198  Sum_probs=150.5

Q ss_pred             ecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEE--EECCCCCEEEEEeCC--CcEEEEcCCCCceeeEEEeec
Q 007283           24 GHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVA--RFSPNGEWIASADVS--GTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        24 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~--~~sp~g~~las~~~d--~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      +..|+..|.......-.+|..+.-..  .+..-.+.+.-+  -||  ..++|-.+.+  +.+++.+...+..+. ++ ..
T Consensus        13 ~Nqd~~~lsvGs~~Gyk~~~~~~~~k--~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~IC-e~-~f   86 (391)
T KOG2110|consen   13 FNQDSTLLSVGSKDGYKIFSCSPFEK--CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTIC-EI-FF   86 (391)
T ss_pred             eccceeEEEccCCCceeEEecCchHH--hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEEEcccCceEE-EE-ec
Confidence            55554444333334455666644333  122222333333  354  4567655544  348888876654332 22 24


Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec---CCccEEEEEEeeCCCeEEEEecCC-CeEEEEeC
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG---HSRRVLSCAFKPSRPFRIATCGED-FLVNFYEG  175 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~~~~~p~~~~~i~t~~~d-~~i~~~~~  175 (609)
                      ..+|.++.+..+  +|+++=...    +.+++...=+.+.++..   +...+..+++++.+.+...-++.+ |.+.+||.
T Consensus        87 pt~IL~VrmNr~--RLvV~Lee~----IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~  160 (391)
T KOG2110|consen   87 PTSILAVRMNRK--RLVVCLEES----IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDT  160 (391)
T ss_pred             CCceEEEEEccc--eEEEEEccc----EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEc
Confidence            567888888764  566554332    44555544445555443   333455555555555544444444 78999999


Q ss_pred             CCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCccccccCcCCCC-ccceEEEEECCCCCeEEEEeC
Q 007283          176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK-GIIYDGKTADKIGELSPEDGH-KGSVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       176 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~s~  253 (609)
                      .+.+....+..|.+.+.|++|+|+|.+||||++.|+ |+++.+.+++++..+.-  |. ...|.+++|+||+++|++.|.
T Consensus       161 ~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR--G~~~~~IySL~Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  161 INLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR--GTYPVSIYSLSFSPDSQFLAASSN  238 (391)
T ss_pred             ccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC--CceeeEEEEEEECCCCCeEEEecC
Confidence            998888888999999999999999999999999996 47999999998877642  32 356899999999999999999


Q ss_pred             CCcEEEeeccc
Q 007283          254 DKSAKVWDISE  264 (609)
Q Consensus       254 d~~i~iwd~~~  264 (609)
                      .++|.+|.++.
T Consensus       239 TeTVHiFKL~~  249 (391)
T KOG2110|consen  239 TETVHIFKLEK  249 (391)
T ss_pred             CCeEEEEEecc
Confidence            99999998753

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.55  E-value=1.7e-13  Score=127.30  Aligned_cols=195  Identities=19%  Similarity=0.271  Sum_probs=142.4

Q ss_pred             eEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEE-e
Q 007283           20 ILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF-R   97 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~-~   97 (609)
                      -.+++..+|..++..+ ++.++||+..+.........|...|.++.|||||++||+.+.| ..+||+.+++-.+.+.- .
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            4788888988887764 6899999976666655667788999999999999999999999 99999999874332221 2


Q ss_pred             ecccceeEEEECCCC---CEEEEEEC--CCCcceEEEEEcCCCCeeE--EEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283           98 VLSGRIDDLQWSPDG---LRIVACGD--GKGKSLVRAFMWDSGTNVG--EFDGHSRRVLSCAFKPSRPFRIATCGEDFLV  170 (609)
Q Consensus        98 ~~~~~v~~~~~spdg---~~l~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i  170 (609)
                      ..+.....+.|+.|+   .++++...  ++.....++..|+.+..+.  ........|.+++.+++|.+ +|.|+.|+.+
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf-~AlGT~dGsV  305 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKF-LALGTMDGSV  305 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcE-EEEeccCCcE
Confidence            234457889999987   33333332  2222223344555432222  12223446999999999986 9999999999


Q ss_pred             EEEeCCCCceeee-ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          171 NFYEGPPFKFKLS-HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       171 ~~~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      -+++....+...- .+.|...|+.+.|+||.+.+++.+.|....+..
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~  352 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTK  352 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEE
Confidence            9999877665443 457999999999999999999888887766654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=1.1e-13  Score=132.08  Aligned_cols=135  Identities=27%  Similarity=0.489  Sum_probs=107.7

Q ss_pred             eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC--CCCeEEEEeCCCcE
Q 007283          180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP--DGKQVLTASADKSA  257 (609)
Q Consensus       180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~s~d~~i  257 (609)
                      ...++.||.+-|+|++|+.||.+|++|++|-.++|||+...+.+..+.  .||...|.++.|-|  ..+.+++|+.|..|
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~--TgHtaNIFsvKFvP~tnnriv~sgAgDk~i  119 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSIS--TGHTANIFSVKFVPYTNNRIVLSGAGDKLI  119 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeee--cccccceeEEeeeccCCCeEEEeccCcceE
Confidence            445688999999999999999999999999999999999888777664  69999999999998  46789999999999


Q ss_pred             EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283          258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP  337 (609)
Q Consensus       258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  337 (609)
                      +++|+.....+            +.+.                           ...........|...|..++..+..+
T Consensus       120 ~lfdl~~~~~~------------~~d~---------------------------~~~~~~~~~~cht~rVKria~~p~~P  160 (758)
T KOG1310|consen  120 KLFDLDSSKEG------------GMDH---------------------------GMEETTRCWSCHTDRVKRIATAPNGP  160 (758)
T ss_pred             EEEeccccccc------------cccc---------------------------CccchhhhhhhhhhhhhheecCCCCC
Confidence            99998631111            0000                           00111123456888898998888888


Q ss_pred             CEEEEEecCCcEEEEecC
Q 007283          338 KVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       338 ~~~~t~s~dg~i~~W~~~  355 (609)
                      ..+.+++.||+|+..|..
T Consensus       161 htfwsasEDGtirQyDiR  178 (758)
T KOG1310|consen  161 HTFWSASEDGTIRQYDIR  178 (758)
T ss_pred             ceEEEecCCcceeeeccc
Confidence            999999999999988754

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.54  E-value=6.8e-13  Score=126.71  Aligned_cols=224  Identities=19%  Similarity=0.280  Sum_probs=150.2

Q ss_pred             CCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCcccc------ccccCCCCcEEEEE-----CCCCCEEEEEeCC
Q 007283           10 CVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVS------IYGEHAYPATVARF-----SPNGEWIASADVS   78 (609)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~------~~~~h~~~v~~~~~-----sp~g~~las~~~d   78 (609)
                      ...+...|..++--.+-+|..|++-.|+.+++|+......+.      .|.+  .+-.|=+|     .|.|--|..|-.-
T Consensus       117 ~~s~~~sg~~~~~~~~~~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf~t  194 (636)
T KOG2394|consen  117 PHSNANSGIVTNTNQSGKGDRLCFNVGRELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGFTT  194 (636)
T ss_pred             ccccccccceeeccccCCCCEEEEecCCeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEeecc
Confidence            333444454445555556889999999999999986433322      1221  12233334     4667667777778


Q ss_pred             CcEEEEcCCCCceee-EE--EeecccceeEEEECCCC--CEEEEEECCCCcceEEEEEcC--------------CCC---
Q 007283           79 GTVRIWGAHNDHVLK-KE--FRVLSGRIDDLQWSPDG--LRIVACGDGKGKSLVRAFMWD--------------SGT---  136 (609)
Q Consensus        79 ~~i~vWd~~~~~~~~-~~--~~~~~~~v~~~~~spdg--~~l~~~~~~~~~~~~~~~~~~--------------~~~---  136 (609)
                      |.|++.|....++.+ ..  -...+..|+++.|-|.+  .+|++-.++.    +.+++..              .+.   
T Consensus       195 Gqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGn----lyly~~~~~~~~t~p~~~~~k~~~~f~  270 (636)
T KOG2394|consen  195 GQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGN----LYLYDKEIVCGATAPSYQALKDGDQFA  270 (636)
T ss_pred             CceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCc----eEEeeccccccCCCCcccccCCCCeeE
Confidence            889988876533211 11  11224679999999954  4555544433    1122111              000   


Q ss_pred             -----------eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEE
Q 007283          137 -----------NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFIS  205 (609)
Q Consensus       137 -----------~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s  205 (609)
                                 ++.-+.--.+.|...+|+||+.+ +|+.+.|+.+++++..+.++...++..-+...|++|||||++|++
T Consensus       271 i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvt  349 (636)
T KOG2394|consen  271 ILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVT  349 (636)
T ss_pred             EeeeeccccCCccceeEeccccccceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEe
Confidence                       11111112346788999999986 999999999999998877766666666677999999999999999


Q ss_pred             EeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283          206 VSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP  243 (609)
Q Consensus       206 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp  243 (609)
                      |++|-.+.||.+...+.+..-   .||++.|..++|.|
T Consensus       350 GGEDDLVtVwSf~erRVVARG---qGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  350 GGEDDLVTVWSFEERRVVARG---QGHKSWVSVVAFDP  384 (636)
T ss_pred             cCCcceEEEEEeccceEEEec---cccccceeeEeecc
Confidence            999999999999888877654   48999999999973

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.3e-12  Score=130.70  Aligned_cols=215  Identities=13%  Similarity=0.114  Sum_probs=142.2

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC---CCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV---SGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR  114 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~---d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~  114 (609)
                      .+.++|...... +.+..|...+..++|||||+.||..+.   +..|.+||+.+++.  ..+..+.+.+...+|||||++
T Consensus       183 ~l~~~d~dg~~~-~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        183 RLAIMDQDGANV-RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             EEEEECCCCCCc-EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCCE
Confidence            677888754443 446678889999999999999987653   46899999987653  345556677889999999999


Q ss_pred             EEEEECCCCcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeeeccCcccce
Q 007283          115 IVACGDGKGKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLSHRGHSNFV  191 (609)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~~~~h~~~v  191 (609)
                      |+...+..+.  ..+|.++. +.....+..+........|+|++..++.+...++  .+.+++....+...... +...+
T Consensus       260 la~~~~~~g~--~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~-~~~~~  336 (435)
T PRK05137        260 VVMSLSQGGN--TDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISF-GGGRY  336 (435)
T ss_pred             EEEEEecCCC--ceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeec-CCCcc
Confidence            8766543332  23555543 2233445556666678899999986444443443  56666765544433222 23445


Q ss_pred             EEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC------CcEEEeec
Q 007283          192 NCVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD------KSAKVWDI  262 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d------~~i~iwd~  262 (609)
                      ....|+|||+.|+..+.+   ..+.+||...+. ...+.    ....+..+.|+|||++|+..+.+      ..+.+.|+
T Consensus       337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt----~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl  411 (435)
T PRK05137        337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILT----SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDL  411 (435)
T ss_pred             cCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEecc----CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEEC
Confidence            678899999999887653   357788865443 22232    12246788999999988776543      24666666


Q ss_pred             c
Q 007283          263 S  263 (609)
Q Consensus       263 ~  263 (609)
                      .
T Consensus       412 ~  412 (435)
T PRK05137        412 T  412 (435)
T ss_pred             C
Confidence            4

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=2.2e-12  Score=131.18  Aligned_cols=216  Identities=16%  Similarity=0.079  Sum_probs=141.3

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe---CCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD---VSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR  114 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~---~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~  114 (609)
                      .+.++|........ +..+.+.+..++|||||+.||..+   .+..|.+|++.+++.  ..+....+.+..++|||||++
T Consensus       180 ~l~~~d~dg~~~~~-lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        180 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             eEEEEcCCCCCCEE-eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCCE
Confidence            68888886655433 455677899999999999998654   235788999877652  223344455667899999999


Q ss_pred             EEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eCCCCceeeeccCcccceE
Q 007283          115 IVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFKLSHRGHSNFVN  192 (609)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~~~~~~~~~~~~h~~~v~  192 (609)
                      |+.+.+..+...+.+++.+.+.. ..+..+...+....|+|++..++.+...++...+|  +...++... +..+.....
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~-~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~-lt~~~~~~~  334 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQR-ITWEGSQNQ  334 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCE-EEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEE-eecCCCCcc
Confidence            99875543333344444444433 33444445678899999998655555444545555  554443322 222333456


Q ss_pred             EEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCc---EEEeecc
Q 007283          193 CVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKS---AKVWDIS  263 (609)
Q Consensus       193 ~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~---i~iwd~~  263 (609)
                      +..|+|||+.|+..+.+   ..+.+||..+++. ..+..  .  .......|+|||++|+..+.++.   +.++++.
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~--~--~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~  406 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTD--T--FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD  406 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCC--C--CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence            78899999998877643   3577889877653 23321  1  12346889999999999988765   5666664

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.54  E-value=4.8e-12  Score=109.00  Aligned_cols=149  Identities=17%  Similarity=0.222  Sum_probs=108.0

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe-
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK-  528 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-  528 (609)
                      ++++-+.|..+-++.++.|+.++.||++++.+  ..++.+|+.-|.++.--.....+.||+.||++|+||..+.+.... 
T Consensus       117 INam~ldP~enSi~~AgGD~~~y~~dlE~G~i--~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~i  194 (325)
T KOG0649|consen  117 INAMWLDPSENSILFAGGDGVIYQVDLEDGRI--QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMI  194 (325)
T ss_pred             cceeEeccCCCcEEEecCCeEEEEEEecCCEE--EEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEe
Confidence            67778888777777777999999999999987  467899999999999855566788999999999999877653211 


Q ss_pred             ------e-ecCCC-CceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCc
Q 007283          529 ------N-MLYHT-ARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC  600 (609)
Q Consensus       529 ------~-~~~h~-~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~  600 (609)
                            . +..|. ..|-|++.  +..+|+.|+. ..+.+|++..........   -..+|.-+.|-+ ..++++|+-..
T Consensus       195 e~yk~~~~lRp~~g~wigala~--~edWlvCGgG-p~lslwhLrsse~t~vfp---ipa~v~~v~F~~-d~vl~~G~g~~  267 (325)
T KOG0649|consen  195 EPYKNPNLLRPDWGKWIGALAV--NEDWLVCGGG-PKLSLWHLRSSESTCVFP---IPARVHLVDFVD-DCVLIGGEGNH  267 (325)
T ss_pred             ccccChhhcCcccCceeEEEec--cCceEEecCC-CceeEEeccCCCceEEEe---cccceeEeeeec-ceEEEeccccc
Confidence                  0 11222 34777777  4668877754 458999997643221121   234466777765 45777888888


Q ss_pred             EEEEEcc
Q 007283          601 VRVWRLT  607 (609)
Q Consensus       601 i~~W~~~  607 (609)
                      +.-|.+.
T Consensus       268 v~~~~l~  274 (325)
T KOG0649|consen  268 VQSYTLN  274 (325)
T ss_pred             eeeeeec
Confidence            8888764

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.53  E-value=9.7e-14  Score=132.37  Aligned_cols=94  Identities=21%  Similarity=0.352  Sum_probs=77.4

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcc
Q 007283          491 RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSR  570 (609)
Q Consensus       491 ~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~  570 (609)
                      ++.|+..+|||||++||+.|+|+.+||+|+.+.++. ..++---+...||+|||||++|++|+.|-.|.||.+...  ..
T Consensus       290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLl-g~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er--RV  366 (636)
T KOG2394|consen  290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELL-GVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER--RV  366 (636)
T ss_pred             cccccceeEcCCCceEEEEecCceEEEeeccHHHHH-HHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc--eE
Confidence            458899999999999999999999999998765432 122223467899999999999999999999999998753  23


Q ss_pred             eeEeccccCCeEEEEEc
Q 007283          571 MTIKGAHLGGVYGLAFT  587 (609)
Q Consensus       571 ~~~~~~h~~~v~~~~~s  587 (609)
                      ..-..||..+|..|+|.
T Consensus       367 VARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  367 VARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EEeccccccceeeEeec
Confidence            45556899999999995

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=2.2e-12  Score=131.80  Aligned_cols=216  Identities=16%  Similarity=0.127  Sum_probs=140.3

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR  114 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~  114 (609)
                      .+.++|...... +.+..|...+..++|+|||+.||..+.+   ..|.+|++.+++.  ..+....+....++|||||++
T Consensus       185 ~l~i~D~~g~~~-~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        185 ALQVADSDGYNP-QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEEECCCCCCc-eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCCE
Confidence            588898855444 3455677789999999999999977643   4699999987653  233444555668899999998


Q ss_pred             EEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCe--EEEEeCCCCceeeeccCcccceE
Q 007283          115 IVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL--VNFYEGPPFKFKLSHRGHSNFVN  192 (609)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~--i~~~~~~~~~~~~~~~~h~~~v~  192 (609)
                      |+...+..+...+.+++.+.+. ...+..+.......+|+|++..++.+...++.  +..++...++..... .+.....
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~  339 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNA  339 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCcc
Confidence            8765433333334444444443 33455555556678999999875555545544  444565554433222 1223345


Q ss_pred             EEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC---CcEEEeecc
Q 007283          193 CVRFSPDGSKFISVSSDK---KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD---KSAKVWDIS  263 (609)
Q Consensus       193 ~l~~s~dg~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d---~~i~iwd~~  263 (609)
                      ..+|+|||+.|+..+.++   .+.+||..+++.. .+.    +........|+|||++++..+.+   +.+.++++.
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt----~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~  411 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLT----PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD  411 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECC----CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            689999999988765443   5889998776643 332    22235577999999988777653   346666654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.53  E-value=1.1e-12  Score=115.75  Aligned_cols=245  Identities=16%  Similarity=0.210  Sum_probs=167.6

Q ss_pred             CCcEEEEEC--CC-CCEEEEEeC----CCcEEEEcCCCC--ceeeEEEeecccceeEEEECCCCC-----EEEEEECCCC
Q 007283           58 YPATVARFS--PN-GEWIASADV----SGTVRIWGAHND--HVLKKEFRVLSGRIDDLQWSPDGL-----RIVACGDGKG  123 (609)
Q Consensus        58 ~~v~~~~~s--p~-g~~las~~~----d~~i~vWd~~~~--~~~~~~~~~~~~~v~~~~~spdg~-----~l~~~~~~~~  123 (609)
                      ....++.||  |+ +.+||-|+.    ...|+|-.+...  +.....--.|.=+++.+.|.||.+     .|++++|   
T Consensus        45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D---  121 (364)
T KOG0290|consen   45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD---  121 (364)
T ss_pred             CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC---
Confidence            356777777  33 456887764    356777765532  221111123555889999999863     5566554   


Q ss_pred             cceEEEEEcCCCCe-e---EEE-----ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC---ceeeeccCcccce
Q 007283          124 KSLVRAFMWDSGTN-V---GEF-----DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF---KFKLSHRGHSNFV  191 (609)
Q Consensus       124 ~~~~~~~~~~~~~~-~---~~~-----~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~---~~~~~~~~h~~~v  191 (609)
                        .+|+|....... +   ..+     ..+..++++.+|..-++.+|.+++-|.+..+||++.+   ..+..+-.|...|
T Consensus       122 --~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV  199 (364)
T KOG0290|consen  122 --FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEV  199 (364)
T ss_pred             --eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcce
Confidence              355655542111 1   111     2456789999999888889999999999999998875   2455677899999


Q ss_pred             EEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEeCC-CcEEEeecccCCCC
Q 007283          192 NCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASAD-KSAKVWDISEDNHG  268 (609)
Q Consensus       192 ~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d-~~i~iwd~~~~~~~  268 (609)
                      ..++|..++. .||+++.||.++++|.+.-+.-..+............++|++. -+++|+-..| ..|.|-|++     
T Consensus       200 ~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR-----  274 (364)
T KOG0290|consen  200 YDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIR-----  274 (364)
T ss_pred             eEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEec-----
Confidence            9999999765 7899999999999998876543333222222345666777663 3456655544 335555543     


Q ss_pred             ceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCc
Q 007283          269 KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL  348 (609)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~  348 (609)
                                                                 ....+...+.+|...|.++++.+..+..+.||++|..
T Consensus       275 -------------------------------------------~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~q  311 (364)
T KOG0290|consen  275 -------------------------------------------VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQ  311 (364)
T ss_pred             -------------------------------------------CCCcceehhhcCcccccceEecCCCCceeeecCCcce
Confidence                                                       1222345678999999999999888889999999999


Q ss_pred             EEEEecC
Q 007283          349 IVKWIQG  355 (609)
Q Consensus       349 i~~W~~~  355 (609)
                      +.+|++.
T Consensus       312 aliWDl~  318 (364)
T KOG0290|consen  312 ALIWDLQ  318 (364)
T ss_pred             EEEEecc
Confidence            9999875

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=2.5e-12  Score=130.94  Aligned_cols=207  Identities=18%  Similarity=0.207  Sum_probs=135.6

Q ss_pred             CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283           37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL  113 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~  113 (609)
                      ..+.++|..... .+.+..+.+.+.+++|||||+.||..+.+   ..|.+||+.+++..  .+....+.+...+|||||+
T Consensus       176 ~~L~~~D~dG~~-~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~--~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDADGQN-AQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRR--VVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECCCCCC-ceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCC
Confidence            367777774333 33355677889999999999999876642   35999999876532  3444455677899999999


Q ss_pred             EEEEEECCCCcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEe--CCCCceee-eccCccc
Q 007283          114 RIVACGDGKGKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKL-SHRGHSN  189 (609)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~~~~~~~~-~~~~h~~  189 (609)
                      +|+...+..+.  .++|.++. +.....+..+........|+|++..++.+...++...+|.  ....+... .+.+  .
T Consensus       253 ~la~~~~~~g~--~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g--~  328 (427)
T PRK02889        253 TLAVALSRDGN--SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTG--S  328 (427)
T ss_pred             EEEEEEccCCC--ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCC--C
Confidence            98865533332  34555543 2234445555555677899999987555555555556664  33333222 2222  2


Q ss_pred             ceEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC
Q 007283          190 FVNCVRFSPDGSKFISVSSDK---KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK  255 (609)
Q Consensus       190 ~v~~l~~s~dg~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~  255 (609)
                      ......|+|||++|+..+.++   .+.+||..+++.. .+.    .........|+|||++|+..+.++
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt----~~~~~~~p~~spdg~~l~~~~~~~  392 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALT----DTTRDESPSFAPNGRYILYATQQG  392 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-Ecc----CCCCccCceECCCCCEEEEEEecC
Confidence            334578999999998877654   5899998876643 332    112346789999999988887543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.2e-11  Score=123.35  Aligned_cols=249  Identities=18%  Similarity=0.184  Sum_probs=166.7

Q ss_pred             eeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCC------C------CEEE
Q 007283            6 ETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPN------G------EWIA   73 (609)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~------g------~~la   73 (609)
                      .|.+..|..++-  .++..+|.| .|+|+.++.|.+.|.-+-+.++.++.|+..|+.++|.|-      +      -+||
T Consensus         7 ~tlpG~l~~sN~--~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliA   83 (1062)
T KOG1912|consen    7 HTLPGPLSRSNR--NAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIA   83 (1062)
T ss_pred             ccCCCCCCcccc--cccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEE
Confidence            456666666552  378888876 699999999999998877777888999999999999763      2      2678


Q ss_pred             EEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECC---CCC-EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEE
Q 007283           74 SADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSP---DGL-RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVL  149 (609)
Q Consensus        74 s~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~sp---dg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  149 (609)
                      +++-.|.|.|||+...-. ...+..+..++..++|=|   |.+ .|+++. +.  ..+.+|.-++|.......-......
T Consensus        84 saD~~GrIil~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh-~s--s~lvLwntdtG~k~Wk~~ys~~iLs  159 (1062)
T KOG1912|consen   84 SADISGRIILVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIH-GS--STLVLWNTDTGEKFWKYDYSHEILS  159 (1062)
T ss_pred             eccccCcEEEEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEec-CC--cEEEEEEccCCceeeccccCCccee
Confidence            898999999999987542 345777888888888766   553 444443 22  2455666677776665444444566


Q ss_pred             EEEEeeCCCeEEEEecCCCeEEEE-eCC------CCceeeeccCccc-------------------------ceEEEEEc
Q 007283          150 SCAFKPSRPFRIATCGEDFLVNFY-EGP------PFKFKLSHRGHSN-------------------------FVNCVRFS  197 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~~i~~~-~~~------~~~~~~~~~~h~~-------------------------~v~~l~~s  197 (609)
                      ++.+.|-+..-++.-+..+.+..- +..      +++..+....|..                         +-..++|+
T Consensus       160 ~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~  239 (1062)
T KOG1912|consen  160 CFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS  239 (1062)
T ss_pred             eeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC
Confidence            688888665445444444444333 211      1222222222211                         11245678


Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC--CeEEEEeCCCcEEEeeccc
Q 007283          198 PDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG--KQVLTASADKSAKVWDISE  264 (609)
Q Consensus       198 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~--~~l~s~s~d~~i~iwd~~~  264 (609)
                      |.-+.++....-..+.++|.+-..++.....   ..+.+.-+.+-|++  ..|++.-.||.+.+|-.+.
T Consensus       240 p~~rn~lfi~~prellv~dle~~~~l~vvpi---er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  240 PHWRNILFITFPRELLVFDLEYECCLAVVPI---ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             hhhhceEEEEeccceEEEcchhhceeEEEEe---ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            8877677777888899999887776665532   34556677777765  4688999999999997543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.52  E-value=2.1e-12  Score=115.98  Aligned_cols=298  Identities=15%  Similarity=0.187  Sum_probs=181.5

Q ss_pred             eecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283           23 SGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        23 ~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      ...-|..+|+...  ...|.+|++.+++....+..-..++..+++||||+-| .+.+.|-.|.||.+.+.++..  +...
T Consensus        55 eW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~--~~~p  132 (447)
T KOG4497|consen   55 EWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL--LPHP  132 (447)
T ss_pred             eeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE--eccc
Confidence            3444555666553  3588999999998877776667789999999999655 577789999999998876432  3333


Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcceEEE---EEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRA---FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP  176 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~  176 (609)
                      ...+..++|+|||++.+.+.-..-...+.+   ..|   ..++.++-.+-..+.+-|+|||.. +         -+||..
T Consensus       133 K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W---~ll~~f~~dT~DltgieWsPdg~~-l---------aVwd~~  199 (447)
T KOG4497|consen  133 KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAW---ILLKEFKLDTIDLTGIEWSPDGNW-L---------AVWDNV  199 (447)
T ss_pred             ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHH---HHHHhcCCCcccccCceECCCCcE-E---------EEecch
Confidence            556799999999998776652111101111   111   123455666677888999999985 3         345532


Q ss_pred             CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc---------------------------------
Q 007283          177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI---------------------------------  223 (609)
Q Consensus       177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~---------------------------------  223 (609)
                      ---.+..+ .-.-.+..++|+|-+++|+.|+.|+.+++.+-.+.+.+                                 
T Consensus       200 Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLs  278 (447)
T KOG4497|consen  200 LEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLS  278 (447)
T ss_pred             hhheeeee-eeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccc
Confidence            11111111 11234788999999999999999998876431110000                                 


Q ss_pred             ---------------------------cccCc---CCCCccceEEEEECCCCCeEEEEeC--CCcEEEeecccCCCCceE
Q 007283          224 ---------------------------GELSP---EDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVWDISEDNHGKLK  271 (609)
Q Consensus       224 ---------------------------~~~~~---~~~h~~~V~~l~~spd~~~l~s~s~--d~~i~iwd~~~~~~~~~~  271 (609)
                                                 ..+.+   .....-.+.-++|++|..++++-..  -+.+.+||++.   .++.
T Consensus       279 f~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~---l~l~  355 (447)
T KOG4497|consen  279 FTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN---LKLH  355 (447)
T ss_pred             cCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechh---hhhh
Confidence                                       00000   0112345778999999999998753  25688999863   2222


Q ss_pred             EEeccCCCCCccceEEEEEEcCC--eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCc
Q 007283          272 KTLTPSGSGGVDDMLVGCLWQND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL  348 (609)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~  348 (609)
                      ..+...      ..+..+.|++.  .+++......+++|....  ......++.--+|..+.++.+ +..++-++.|.-
T Consensus       356 avLiQk------~piraf~WdP~~prL~vctg~srLY~W~psg--~~~V~vP~~GF~i~~l~W~~~-g~~i~l~~kDaf  425 (447)
T KOG4497|consen  356 AVLIQK------HPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG--PRVVGVPKKGFNIQKLQWLQP-GEFIVLCGKDAF  425 (447)
T ss_pred             hhhhhc------cceeEEEeCCCCceEEEEcCCceEEEEcCCC--ceEEecCCCCceeeeEEecCC-CcEEEEEcCCce
Confidence            222111      12445667654  455555556677786543  222222333357778887643 345666666543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=3.7e-12  Score=129.43  Aligned_cols=216  Identities=13%  Similarity=0.177  Sum_probs=141.6

Q ss_pred             ceeEEeecCCCCeEEEeC----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEE-eCCC--cEEEEcCCCCc
Q 007283           18 RGILISGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASA-DVSG--TVRIWGAHNDH   90 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~-~~d~--~i~vWd~~~~~   90 (609)
                      ......++|||+.|+|..    ...+.++++.+++... +....+.+..++|||||+.||.. +.++  .|.+||+.+++
T Consensus       200 ~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-l~~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~  278 (429)
T PRK03629        200 PLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQ  278 (429)
T ss_pred             ceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ccCCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            455889999999998852    3578899998775432 22233445678999999998854 4455  48888987765


Q ss_pred             eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-CeeEEEecCCccEEEEEEeeCCCeEEEEecCC--
Q 007283           91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCGED--  167 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d--  167 (609)
                      .  ..+......+...+|+|||++|+.+.+..+.  .++|.++.. .....+..+........|+|++..++.+...+  
T Consensus       279 ~--~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~--~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~  354 (429)
T PRK03629        279 I--RQVTDGRSNNTEPTWFPDSQNLAYTSDQAGR--PQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  354 (429)
T ss_pred             E--EEccCCCCCcCceEECCCCCEEEEEeCCCCC--ceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEccCCC
Confidence            3  2344444567889999999999988765433  345555432 22333433444456788999998755555443  


Q ss_pred             CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc---EEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283          168 FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK---GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD  244 (609)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~---i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd  244 (609)
                      ..+.+||..+++.......+  ......|+|||++|+.++.++.   +.+++.. +.....+   .+|.+.+...+|+|-
T Consensus       355 ~~I~~~dl~~g~~~~Lt~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l---~~~~~~~~~p~Wsp~  428 (429)
T PRK03629        355 QHIAKQDLATGGVQVLTDTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARL---PATDGQVKFPAWSPY  428 (429)
T ss_pred             ceEEEEECCCCCeEEeCCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEEC---ccCCCCcCCcccCCC
Confidence            35677787666543322222  2345789999999999988764   4566653 3333344   257778888999873

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.51  E-value=8.9e-11  Score=105.47  Aligned_cols=241  Identities=13%  Similarity=0.175  Sum_probs=152.5

Q ss_pred             cCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEE-EeCC------CcEEEEcCCC
Q 007283           16 RGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIAS-ADVS------GTVRIWGAHN   88 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las-~~~d------~~i~vWd~~~   88 (609)
                      .+....+++..|....+.+.....+||...--+....-..+.+++.-+..---.++||- |+.+      ..+.||| +.
T Consensus         5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWD-D~   83 (346)
T KOG2111|consen    5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWD-DL   83 (346)
T ss_pred             cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEe-cc
Confidence            44556789998887777766666777777432221111112222222222223466763 3332      3799999 33


Q ss_pred             CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEe--c
Q 007283           89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATC--G  165 (609)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~--~  165 (609)
                      .+.+..++ ....+|.++.+++|  +++++-.++    +.+|.+.. .+.+..+.....+=--|+..|.....+.++  -
T Consensus        84 k~~~i~el-~f~~~I~~V~l~r~--riVvvl~~~----I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~  156 (346)
T KOG2111|consen   84 KERCIIEL-SFNSEIKAVKLRRD--RIVVVLENK----IYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF  156 (346)
T ss_pred             cCcEEEEE-EeccceeeEEEcCC--eEEEEecCe----EEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence            33333333 35678999999987  566554432    44444442 233444433222211344445433333333  3


Q ss_pred             CCCeEEEEeCCCCce--eeeccCcccceEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCccccccCcCCCCccceEEEEEC
Q 007283          166 EDFLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDKK-GIIYDGKTADKIGELSPEDGHKGSVYAVSWS  242 (609)
Q Consensus       166 ~d~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~-i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s  242 (609)
                      .-|.+++-+...-+.  ......|...|.|++.+.+|.++||+|..|+ |+|||..+++.+..+.-. .-...|++++||
T Consensus       157 k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG-~d~A~iy~iaFS  235 (346)
T KOG2111|consen  157 KTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRG-VDRADIYCIAFS  235 (346)
T ss_pred             ccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecC-CchheEEEEEeC
Confidence            347788877544333  3456789999999999999999999999986 689999999988776421 123579999999


Q ss_pred             CCCCeEEEEeCCCcEEEeecccC
Q 007283          243 PDGKQVLTASADKSAKVWDISED  265 (609)
Q Consensus       243 pd~~~l~s~s~d~~i~iwd~~~~  265 (609)
                      |+..+|+.+|.-|++.||.+...
T Consensus       236 p~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  236 PNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             CCccEEEEEcCCCeEEEEEeecC
Confidence            99999999999999999998653

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.51  E-value=1.3e-10  Score=104.52  Aligned_cols=101  Identities=16%  Similarity=0.309  Sum_probs=82.1

Q ss_pred             EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCe-EEEEEccCCceEEeeecC-CCCceEEEEE
Q 007283          465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNRE-AIVWDRVSREVKLKNMLY-HTARINCLAW  542 (609)
Q Consensus       465 gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~-h~~~i~~l~~  542 (609)
                      |-+-|.|+|-++............+|.+.|.|++.+.+|..+||+|..|| |||||..+++.......+ -.+.|.|++|
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF  234 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF  234 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe
Confidence            34568899999865543223667899999999999999999999999999 589999888764332222 3457999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEEcCC
Q 007283          543 SPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       543 s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      |||..+||.+|.-|||.+|.+..
T Consensus       235 Sp~~s~LavsSdKgTlHiF~l~~  257 (346)
T KOG2111|consen  235 SPNSSWLAVSSDKGTLHIFSLRD  257 (346)
T ss_pred             CCCccEEEEEcCCCeEEEEEeec
Confidence            99999999999999999998853

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.7e-12  Score=129.65  Aligned_cols=219  Identities=16%  Similarity=0.168  Sum_probs=137.9

Q ss_pred             cCceeEEeecCCCCeEEEeC---C-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCc
Q 007283           16 RGRGILISGHPKSNSILYTN---G-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDH   90 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~---~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~   90 (609)
                      ++..+...++|||+.|+|..   + ..+.+||+.+++... +....+.+..++|||||+.|| +.+.++..+||.++...
T Consensus       195 ~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  273 (427)
T PRK02889        195 PEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG  273 (427)
T ss_pred             CCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC
Confidence            34445788999999998863   2 469999998876543 444455677899999999887 56788888888664321


Q ss_pred             eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC--CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-
Q 007283           91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-  167 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-  167 (609)
                      .....+..+........|+|||++|+.+++..+.  ..+|..+  .+. ...+..+.......+|+|++..++.+...+ 
T Consensus       274 ~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~--~~Iy~~~~~~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g  350 (427)
T PRK02889        274 SGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA--PQIYRMPASGGA-AQRVTFTGSYNTSPRISPDGKLLAYISRVGG  350 (427)
T ss_pred             CCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCC--cEEEEEECCCCc-eEEEecCCCCcCceEECCCCCEEEEEEccCC
Confidence            1123344444556778999999999988764333  2345444  232 222222223344678999998755444333 


Q ss_pred             -CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC-c--EEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283          168 -FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK-K--GIIYDGKTADKIGELSPEDGHKGSVYAVSWSP  243 (609)
Q Consensus       168 -~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~-~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp  243 (609)
                       ..+.+|+...++......+  .......|+|||+.|+.++.++ .  +.+.+. .+.....+   ..+.+.+...+|+|
T Consensus       351 ~~~I~v~d~~~g~~~~lt~~--~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l---~~~~g~~~~p~wsp  424 (427)
T PRK02889        351 AFKLYVQDLATGQVTALTDT--TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRL---SVQGGDVREPSWGP  424 (427)
T ss_pred             cEEEEEEECCCCCeEEccCC--CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEe---ecCCCCCCCCccCC
Confidence             3688888776654433322  2346779999999888877544 2  333344 23333223   13556677778877


Q ss_pred             C
Q 007283          244 D  244 (609)
Q Consensus       244 d  244 (609)
                      -
T Consensus       425 ~  425 (427)
T PRK02889        425 F  425 (427)
T ss_pred             C
Confidence            4

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.3e-11  Score=123.05  Aligned_cols=219  Identities=15%  Similarity=0.117  Sum_probs=134.5

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE---EEeCCCcEEEE--cCCCCceeeEEEeecccceeEEEECCCC
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA---SADVSGTVRIW--GAHNDHVLKKEFRVLSGRIDDLQWSPDG  112 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la---s~~~d~~i~vW--d~~~~~~~~~~~~~~~~~v~~~~~spdg  112 (609)
                      .+.+.|....... .+..+...+...+|||||+.++   ....++.-+||  ++.+++.  ..+....+.....+|||||
T Consensus       166 ~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        166 ELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPRK  242 (428)
T ss_pred             eEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCCC
Confidence            5667776554443 3444566778899999998532   44455555555  6555442  3344555666788999999


Q ss_pred             CEEEEEECCCCcceEEEEEcC--CC---CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEe--CCC-Cceeeec
Q 007283          113 LRIVACGDGKGKSLVRAFMWD--SG---TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPP-FKFKLSH  184 (609)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~~~-~~~~~~~  184 (609)
                      ++|+.+.+..+...+.+..|+  .+   .......++.......+|+|||..++.+...++...+|.  ... ......+
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~l  322 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLL  322 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEe
Confidence            999988754333233343343  21   222222233334467899999986555555566555553  321 1222233


Q ss_pred             cCcccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC---CCcEE
Q 007283          185 RGHSNFVNCVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA---DKSAK  258 (609)
Q Consensus       185 ~~h~~~v~~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~---d~~i~  258 (609)
                      ..+...+....|+|||++|+..+.+   ..+.+||..+++.. .+.   .....+....|+|||++|+..+.   ...|.
T Consensus       323 t~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt---~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~  398 (428)
T PRK01029        323 TKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLT---TSPENKESPSWAIDSLHLVYSAGNSNESELY  398 (428)
T ss_pred             ccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE-Ecc---CCCCCccceEECCCCCEEEEEECCCCCceEE
Confidence            3344566788999999998877653   36889998877643 232   12345678999999998775433   34577


Q ss_pred             Eeecc
Q 007283          259 VWDIS  263 (609)
Q Consensus       259 iwd~~  263 (609)
                      ++|+.
T Consensus       399 ~vdl~  403 (428)
T PRK01029        399 LISLI  403 (428)
T ss_pred             EEECC
Confidence            77775

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=1.5e-11  Score=125.90  Aligned_cols=217  Identities=18%  Similarity=0.220  Sum_probs=139.6

Q ss_pred             cCceeEEeecCCCCeEEEeC----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCc--EEEEcCCC
Q 007283           16 RGRGILISGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGT--VRIWGAHN   88 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~--i~vWd~~~   88 (609)
                      .+..+...++|||+.|+|..    ...+.+||+.++... .+..+.+.+...+|||||+.|+ +.+.++.  |.+||..+
T Consensus       201 ~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~  279 (435)
T PRK05137        201 SSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRS  279 (435)
T ss_pred             CCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCC
Confidence            44566888999999999863    258999999877653 3556677788999999999876 5666665  55567766


Q ss_pred             CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-
Q 007283           89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-  167 (609)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-  167 (609)
                      ++.  ..+..+.......+|+|||++|+.+.+..+...+.+++.+.+. ...+..+...+....|+|++..++.+.... 
T Consensus       280 ~~~--~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~  356 (435)
T PRK05137        280 GTT--TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN-PRRISFGGGRYSTPVWSPRGDLIAFTKQGGG  356 (435)
T ss_pred             Cce--EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC-eEEeecCCCcccCeEECCCCCEEEEEEcCCC
Confidence            543  3355555566789999999999988765444333344433332 333433445566788999998755444322 


Q ss_pred             -CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283          168 -FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD------KKGIIYDGKTADKIGELSPEDGHKGSVYAVS  240 (609)
Q Consensus       168 -~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~  240 (609)
                       ..+.+++...........+  ..+....|+|||+.|+..+.+      ..+.++|...++. ..+.    ..+.+...+
T Consensus       357 ~~~i~~~d~~~~~~~~lt~~--~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~----~~~~~~~p~  429 (435)
T PRK05137        357 QFSIGVMKPDGSGERILTSG--FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVP----TPGDASDPA  429 (435)
T ss_pred             ceEEEEEECCCCceEeccCC--CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce-EEcc----CCCCccCcc
Confidence             3566777544332222222  246778999999988776543      2466667654433 2332    133456677


Q ss_pred             ECC
Q 007283          241 WSP  243 (609)
Q Consensus       241 ~sp  243 (609)
                      |+|
T Consensus       430 Wsp  432 (435)
T PRK05137        430 WSP  432 (435)
T ss_pred             cCC
Confidence            776

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.44  E-value=1.7e-12  Score=118.70  Aligned_cols=126  Identities=26%  Similarity=0.400  Sum_probs=99.2

Q ss_pred             CcceeecCCCccCcCceeEEeecCCCCeEEEeCC---CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCC
Q 007283            3 QLAETYTCVPSTERGRGILISGHPKSNSILYTNG---RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSG   79 (609)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~   79 (609)
                      +|.+|+.=.|.-++| .++++.++.+.+|+||..   +.|+|||+.+-+....+..|++++.|++|+|+|.+|||+|..|
T Consensus       117 klLhTI~t~~~n~~g-l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG  195 (391)
T KOG2110|consen  117 KLLHTIETTPPNPKG-LCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG  195 (391)
T ss_pred             eeehhhhccCCCccc-eEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence            456666644333354 578888888889999964   6899999999999889999999999999999999999999999


Q ss_pred             c-EEEEcCCCCceeeEEEeec--ccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283           80 T-VRIWGAHNDHVLKKEFRVL--SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD  133 (609)
Q Consensus        80 ~-i~vWd~~~~~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  133 (609)
                      | |||+.+.+++.+ .+|+--  ...|..++|+||+++|.++++...   ++++..+
T Consensus       196 TVIRVf~v~~G~kl-~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeT---VHiFKL~  248 (391)
T KOG2110|consen  196 TVIRVFSVPEGQKL-YEFRRGTYPVSIYSLSFSPDSQFLAASSNTET---VHIFKLE  248 (391)
T ss_pred             eEEEEEEcCCccEe-eeeeCCceeeEEEEEEECCCCCeEEEecCCCe---EEEEEec
Confidence            8 599999887643 345432  235789999999999999887653   4444443

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.44  E-value=1.6e-11  Score=109.64  Aligned_cols=152  Identities=22%  Similarity=0.343  Sum_probs=106.9

Q ss_pred             eEEEECCCCCEEEEEECC---CC-c---ceEEEEEcCC-CCeeEEEec-CCccEEEEEEeeCCCeEEE-EecCCCeEEEE
Q 007283          104 DDLQWSPDGLRIVACGDG---KG-K---SLVRAFMWDS-GTNVGEFDG-HSRRVLSCAFKPSRPFRIA-TCGEDFLVNFY  173 (609)
Q Consensus       104 ~~~~~spdg~~l~~~~~~---~~-~---~~~~~~~~~~-~~~~~~~~~-h~~~v~~~~~~p~~~~~i~-t~~~d~~i~~~  173 (609)
                      ..+.|+|+|.+|++..+.   +. .   ....++.++. +.....+.- ..++|.+++|+|++..+++ .|..+..+.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            467899999988876541   11 1   1123344432 223333322 3456999999999886433 34456789999


Q ss_pred             eCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEE
Q 007283          174 EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT  250 (609)
Q Consensus       174 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s  250 (609)
                      |.. .+....+  +...++.+.|+|+|++|++|+.+   |.+.+||.++.+.+...    .|. .++.++|+|||++|++
T Consensus        89 d~~-~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~----~~~-~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   89 DVK-GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF----EHS-DATDVEWSPDGRYLAT  160 (194)
T ss_pred             cCc-ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc----ccC-cEEEEEEcCCCCEEEE
Confidence            986 4444444  34567899999999999998753   67999999988877655    233 4789999999999999


Q ss_pred             EeC------CCcEEEeecc
Q 007283          251 ASA------DKSAKVWDIS  263 (609)
Q Consensus       251 ~s~------d~~i~iwd~~  263 (609)
                      ++.      |..++||+..
T Consensus       161 a~t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             EEeccceeccccEEEEEec
Confidence            874      7888999985

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.44  E-value=3e-12  Score=131.97  Aligned_cols=148  Identities=24%  Similarity=0.315  Sum_probs=124.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC
Q 007283          453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY  532 (609)
Q Consensus       453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~  532 (609)
                      +..+++.-++++|+--+.|.+|+.......  ..+.+|++.|.++.++-||.++++.|.|+++|+|++.+.+.......+
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p--~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg  216 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKP--IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG  216 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCc--ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc
Confidence            446788889999999999999997633321  247899999999999999999999999999999999887765545778


Q ss_pred             CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccC-CeEEEEEcC-CCeEEEEeCCCcEEEEEcc
Q 007283          533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLG-GVYGLAFTD-EHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       533 h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~-~v~~~~~s~-~~~l~s~s~D~~i~~W~~~  607 (609)
                      |+++|+.+.|+|+  .++|++.|.+.++|+.+..   .+....+|.+ .||.++..+ ...++|++.|+.+++|++.
T Consensus       217 HsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~---~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~  288 (967)
T KOG0974|consen  217 HSARVWACCFLPN--RIITVGEDCTCRVWGVNGT---QLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN  288 (967)
T ss_pred             ccceeEEEEeccc--eeEEeccceEEEEEecccc---eehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence            9999999999988  8999999999999987642   2334556764 699999994 5567899999999999874

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.43  E-value=8.9e-13  Score=123.73  Aligned_cols=228  Identities=16%  Similarity=0.270  Sum_probs=175.7

Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC-CCCee
Q 007283           60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD-SGTNV  138 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~  138 (609)
                      -..+.++.+|+.|+-|+..|.+-..|..+.+. ..++. ..+.|..+.|-...+++++..- +     .++.+| .+..+
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L-~~Ei~-v~Etv~Dv~~LHneq~~AVAQK-~-----y~yvYD~~GtEl  203 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL-HFEIN-VMETVRDVTFLHNEQFFAVAQK-K-----YVYVYDNNGTEL  203 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeeccccee-eeeee-hhhhhhhhhhhcchHHHHhhhh-c-----eEEEecCCCcEE
Confidence            46789999999999999999999999998763 33332 3456888888888777776532 1     244555 45667


Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK  218 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~  218 (609)
                      +.++.|. +|..+.|-|.. +.+++++..+.+++-|+..++.+..+.--.+.+..++-+|-+..+-+|...|+|-+|.+.
T Consensus       204 HClk~~~-~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~  281 (545)
T KOG1272|consen  204 HCLKRHI-RVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPN  281 (545)
T ss_pred             eehhhcC-chhhhcccchh-heeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCC
Confidence            7666554 68889999986 568999999999999999999988887777888889999999899999999999999998


Q ss_pred             CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283          219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI  298 (609)
Q Consensus       219 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (609)
                      ..+.+..+.   .|.+.|.++++.++|+|++|.|.|..++|||++.-  .++....++...       .....++..+++
T Consensus       282 skePLvKiL---cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~--~ql~t~~tp~~a-------~~ls~SqkglLA  349 (545)
T KOG1272|consen  282 SKEPLVKIL---CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF--YQLHTYRTPHPA-------SNLSLSQKGLLA  349 (545)
T ss_pred             CcchHHHHH---hcCCCcceEEECCCCcEEeecccccceeEeeeccc--cccceeecCCCc-------ccccccccccee
Confidence            888766553   69999999999999999999999999999999742  222222221111       112335556677


Q ss_pred             EEcCCcEEEEe
Q 007283          299 VSLGGTISIFS  309 (609)
Q Consensus       299 ~~~~g~i~~~~  309 (609)
                      .+.+..+.+|.
T Consensus       350 ~~~G~~v~iw~  360 (545)
T KOG1272|consen  350 LSYGDHVQIWK  360 (545)
T ss_pred             eecCCeeeeeh
Confidence            78888899996

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.43  E-value=2.2e-11  Score=124.43  Aligned_cols=214  Identities=15%  Similarity=0.248  Sum_probs=138.4

Q ss_pred             ceeEEeecCCCCeEEEeC---C-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCC--cEEEEcCCCCc
Q 007283           18 RGILISGHPKSNSILYTN---G-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSG--TVRIWGAHNDH   90 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~---~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~--~i~vWd~~~~~   90 (609)
                      ..+...++|||+.|+|..   + ..+.+|++.+++... +..+.+...+++|||||+.|+ +.+.++  .|.+||+.+++
T Consensus       205 ~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~  283 (433)
T PRK04922        205 PILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQ  283 (433)
T ss_pred             ccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCC
Confidence            345678999999999874   2 479999998776543 444455566889999999886 555555  58889988765


Q ss_pred             eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC--CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-
Q 007283           91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-  167 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-  167 (609)
                      .  ..+..+......++|+|||++|+.+.+..+..  .++.++  .+.. ..+..+.......+|+|++..++.+...+ 
T Consensus       284 ~--~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~--~iy~~dl~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~  358 (433)
T PRK04922        284 L--TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRP--QIYRVAASGGSA-ERLTFQGNYNARASVSPDGKKIAMVHGSGG  358 (433)
T ss_pred             e--EECccCCCCccceEECCCCCEEEEEECCCCCc--eEEEEECCCCCe-EEeecCCCCccCEEECCCCCEEEEEECCCC
Confidence            3  23444444557789999999999887644332  344444  3332 22222333445689999998755544433 


Q ss_pred             -CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283          168 -FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP  243 (609)
Q Consensus       168 -~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp  243 (609)
                       ..+.+|+..+++......+  .......|+|||++|+..+.+   ..+.+++... .....+.   .+.+.+...+|+|
T Consensus       359 ~~~I~v~d~~~g~~~~Lt~~--~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~---~~~g~~~~p~wsp  432 (433)
T PRK04922        359 QYRIAVMDLSTGSVRTLTPG--SLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-RVRQRLV---SADGEVREPAWSP  432 (433)
T ss_pred             ceeEEEEECCCCCeEECCCC--CCCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEEcc---cCCCCCCCCccCC
Confidence             3688888776655432222  234467899999988877653   3466677643 3333332   3455677778876

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.41  E-value=6e-11  Score=107.55  Aligned_cols=253  Identities=15%  Similarity=0.296  Sum_probs=168.8

Q ss_pred             eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283          182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK-TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW  260 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw  260 (609)
                      ..+.||.+.++....-|...-+.+++.|.+++||--+ .++....+.  ......+.++.+.++.+.|+.+-..|++.-+
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~--~~mP~~~~~~~y~~e~~~L~vg~~ngtvtef   95 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIY--HYMPSPCSAMEYVSESRRLYVGQDNGTVTEF   95 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhh--hhCCCCceEeeeeccceEEEEEEecceEEEE
Confidence            3467888888887777777778999999999999533 233322222  1245678999999999999998888888777


Q ss_pred             ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283          261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI  340 (609)
Q Consensus       261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  340 (609)
                      .+.+.-.. .                                            ..+.....|...|..+.|. ..+.++
T Consensus        96 s~sedfnk-m--------------------------------------------~~~r~~~~h~~~v~~~if~-~~~e~V  129 (404)
T KOG1409|consen   96 ALSEDFNK-M--------------------------------------------TFLKDYLAHQARVSAIVFS-LTHEWV  129 (404)
T ss_pred             Ehhhhhhh-c--------------------------------------------chhhhhhhhhcceeeEEec-CCceeE
Confidence            65421100 0                                            0011223477777777765 344788


Q ss_pred             EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccC
Q 007283          341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY  420 (609)
Q Consensus       341 ~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  420 (609)
                      ++++.|..+. |.-                  ...          +..+-                              
T Consensus       130 ~s~~~dk~~~-~hc------------------~e~----------~~~lg------------------------------  150 (404)
T KOG1409|consen  130 LSTGKDKQFA-WHC------------------TES----------GNRLG------------------------------  150 (404)
T ss_pred             EEeccccceE-EEe------------------ecc----------CCccc------------------------------
Confidence            8888877653 210                  000          00000                              


Q ss_pred             CcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEEC
Q 007283          421 PELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYS  500 (609)
Q Consensus       421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s  500 (609)
                       .++...                     +.+++.+.-  .+...|...|.|..-.+....+.....+.+|.+.+.+++|.
T Consensus       151 -~Y~~~~---------------------~~t~~~~d~--~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd  206 (404)
T KOG1409|consen  151 -GYNFET---------------------PASALQFDA--LYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD  206 (404)
T ss_pred             -ceEeec---------------------cCCCCceee--EEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc
Confidence             000000                     000000000  03445666676766666544554456778999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          501 PDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       501 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      |....+.+|..|..+.+||+.......-++.+|+..|..+.+-+--+.|.+++.||.|.+|+++.
T Consensus       207 ~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  207 PGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             CCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence            99999999999999999998766555556788999999999999899999999999999999753

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.40  E-value=9.2e-11  Score=120.28  Aligned_cols=209  Identities=13%  Similarity=0.165  Sum_probs=136.7

Q ss_pred             CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283           37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL  113 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~  113 (609)
                      ..+.++|...... +.+..+...+..++|||||++||.+..+   .+|.+||+.+++..  .+..+.+.+..++|+|||+
T Consensus       170 ~~l~~~d~~g~~~-~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~--~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGANP-QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE--KVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCCC-EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE--EeecCCCCccceEECCCCC
Confidence            3577888754444 3455566779999999999999976543   47999999876532  2344556677899999999


Q ss_pred             EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeeeccCcccce
Q 007283          114 RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLSHRGHSNFV  191 (609)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~~~~h~~~v  191 (609)
                      .|+...+..+...+.+++.+.+. ...+..+........|+|++..++.+...++  .+.+++....+.. .+..+...+
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~  324 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYN  324 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCc
Confidence            88876544333334444444433 3334444444556789999986555544443  4666676555433 222344556


Q ss_pred             EEEEEcCCCCEEEEEeCCC---cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC
Q 007283          192 NCVRFSPDGSKFISVSSDK---KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK  255 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~~d~---~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~  255 (609)
                      ....|+|+|++|+.++.++   .+.+||..++.. ..+.   . ........|+|||++|+..+.++
T Consensus       325 ~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~---~-~~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       325 ASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE-RVLT---D-TGLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             cCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe-EEcc---C-CCCCCCceECCCCCEEEEEEeCC
Confidence            7789999999998888775   788888876543 2221   1 12245678999999888877654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.38  E-value=7.1e-07  Score=98.08  Aligned_cols=434  Identities=13%  Similarity=0.135  Sum_probs=230.3

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEE----cCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283           57 AYPATVARFSPNGEWIASADVSGTVRIW----GAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i~vW----d~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  132 (609)
                      .+.|..+.+-++..-|..+..+|.|-+.    +..+..+.  .......+|.+++||||++.|+.+.....         
T Consensus        75 ~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E--~VG~vd~GI~a~~WSPD~Ella~vT~~~~---------  143 (928)
T PF04762_consen   75 NDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIE--IVGSVDSGILAASWSPDEELLALVTGEGN---------  143 (928)
T ss_pred             CCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeE--EEEEEcCcEEEEEECCCcCEEEEEeCCCE---------
Confidence            4568899999999988888899999999    55554322  23345678999999999998887653221         


Q ss_pred             CCCCeeEEEecCCccEEEEEEeeCC--CeEEEEecCCCeEEEEeCCCCce--------------eeeccCcccceEEEEE
Q 007283          133 DSGTNVGEFDGHSRRVLSCAFKPSR--PFRIATCGEDFLVNFYEGPPFKF--------------KLSHRGHSNFVNCVRF  196 (609)
Q Consensus       133 ~~~~~~~~~~~h~~~v~~~~~~p~~--~~~i~t~~~d~~i~~~~~~~~~~--------------~~~~~~h~~~v~~l~~  196 (609)
                           +..+..+-+.+....+++++  ....++.|+...=.-+-+.-+|.              ...+. +...-..++|
T Consensus       144 -----l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISW  217 (928)
T PF04762_consen  144 -----LLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISW  217 (928)
T ss_pred             -----EEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEE
Confidence                 11122333344455554432  12345555443322222111111              01111 3334567899


Q ss_pred             cCCCCEEEEEeC---C---CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC---CCcEEEeecccCCC
Q 007283          197 SPDGSKFISVSS---D---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA---DKSAKVWDISEDNH  267 (609)
Q Consensus       197 s~dg~~l~s~~~---d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~---d~~i~iwd~~~~~~  267 (609)
                      -.||+++|+.+-   .   ..++||+-+ |.....-.   .-.+--.+++|-|.|.+||+.-.   ...|.+|.-+.   
T Consensus       218 RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE---~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNG---  290 (928)
T PF04762_consen  218 RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE---PVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNG---  290 (928)
T ss_pred             CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc---cCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCC---
Confidence            999999998764   2   478899743 54332221   12233457899999999998864   35677787553   


Q ss_pred             CceEEEeccCCCCCccceEEEEEEcCC--eEEEEEcCCcEEEEeCCC-CCCCceeeeC-CCCCeEEEEEecCCCCEEEEE
Q 007283          268 GKLKKTLTPSGSGGVDDMLVGCLWQND--FLVIVSLGGTISIFSAND-LEKSPLQLSG-HMKNVTALTVLNIDPKVILSS  343 (609)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~~~~~-~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~t~  343 (609)
                       .....+.... ......+....|+.+  .|++ -....|.+|...- .......+.. ....+..+.|++.++..+...
T Consensus       291 -LrhgeF~l~~-~~~~~~v~~l~Wn~ds~iLAv-~~~~~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~  367 (928)
T PF04762_consen  291 -LRHGEFTLRF-DPEEEKVIELAWNSDSEILAV-WLEDRVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVL  367 (928)
T ss_pred             -cEeeeEecCC-CCCCceeeEEEECCCCCEEEE-EecCCceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEE
Confidence             2233332221 011223456678744  4444 4455589986421 1111122221 223344577887777777777


Q ss_pred             ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccc-eEEEEeccCCccccccccccCCCCceeEeeccCCc
Q 007283          344 SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDN-KIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE  422 (609)
Q Consensus       344 s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (609)
                      +.+|.+...+..-....   . ...      ...+.-.++..|+ ++....+...        ..+++.           
T Consensus       368 t~~g~~~~~~~~~~v~~---s-~~~------~~~D~g~vaVIDG~~lllTpf~~a--------~VPPPM-----------  418 (928)
T PF04762_consen  368 TSNGQYEIYDFAWDVSR---S-PGS------SPNDNGTVAVIDGNKLLLTPFRRA--------VVPPPM-----------  418 (928)
T ss_pred             ecCCcEEEEEEEEEEEe---c-CCC------CccCceEEEEEeCCeEEEeccccc--------CCCchH-----------
Confidence            76666654322110000   0 000      0000111111111 1111111000        000000           


Q ss_pred             EEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeee------eEEE---------
Q 007283          423 LVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE------EAVL---------  487 (609)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~------~~~~---------  487 (609)
                                       ....+....++.+++|++++..+|+-..||.|.+|.........      ...+         
T Consensus       419 -----------------s~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  481 (928)
T PF04762_consen  419 -----------------SSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISD  481 (928)
T ss_pred             -----------------hceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccc
Confidence                             01223345678999999999889999999999999864332110      0001         


Q ss_pred             -ecCCCceEEEEECCCCCEEEEEeCC---CeEEEEEccCCc--eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEE
Q 007283          488 -EKHRGAVSVIRYSPDVSMFASGDVN---REAIVWDRVSRE--VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIY  561 (609)
Q Consensus       488 -~~h~~~i~~v~~s~~~~~l~s~s~d---~~v~iwd~~~~~--~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw  561 (609)
                       ..-...+..+.|..+..+++..+.+   ..+.+++....+  ........-...+..+...++...++.-..||.|...
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~  561 (928)
T PF04762_consen  482 SELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQL  561 (928)
T ss_pred             cccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEe
Confidence             1113456788887777776666554   567777763222  1122222234445556666665546666778877765


Q ss_pred             Ec
Q 007283          562 EI  563 (609)
Q Consensus       562 ~~  563 (609)
                      +.
T Consensus       562 ~~  563 (928)
T PF04762_consen  562 SS  563 (928)
T ss_pred             ec
Confidence            44

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=7.5e-11  Score=105.34  Aligned_cols=147  Identities=16%  Similarity=0.386  Sum_probs=97.8

Q ss_pred             EEEcCCCCEEEEEeC----------CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEE--EeCCCeEEEEEc
Q 007283          453 SAIAPDGSEAIIGSQ----------DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS--GDVNREAIVWDR  520 (609)
Q Consensus       453 ~~~sp~g~~l~~gs~----------dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s--~s~d~~v~iwd~  520 (609)
                      +.++|+|.+|++-..          -+...+|.++..............++|.+++|+|+|..+|+  |..++.+.+||+
T Consensus        11 ~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~   90 (194)
T PF08662_consen   11 LHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDV   90 (194)
T ss_pred             EEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcC
Confidence            345666665544322          13455665533222111222234567999999999998755  457789999998


Q ss_pred             cCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC---CeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEe
Q 007283          521 VSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD---TCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSG  596 (609)
Q Consensus       521 ~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D---~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s  596 (609)
                      ...  .+.  ..+...++.+.|||+|++|++|+.+   |.|.+||+...  ..+.  ..+...+..++|| |+++++++.
T Consensus        91 ~~~--~i~--~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~--~~i~--~~~~~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen   91 KGK--KIF--SFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKK--KKIS--TFEHSDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             ccc--EeE--eecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCC--EEee--ccccCcEEEEEEcCCCCEEEEEE
Confidence            532  222  2346678999999999999998754   56999999743  2222  2334457899999 788888765


Q ss_pred             ------CCCcEEEEEcc
Q 007283          597 ------EDACVRVWRLT  607 (609)
Q Consensus       597 ------~D~~i~~W~~~  607 (609)
                            .|..+++|++.
T Consensus       163 t~~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  163 TSPRLRVDNGFKIWSFQ  179 (194)
T ss_pred             eccceeccccEEEEEec
Confidence                  48999999975

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.37  E-value=1.3e-10  Score=121.91  Aligned_cols=254  Identities=17%  Similarity=0.226  Sum_probs=145.4

Q ss_pred             CCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCC----ceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcE
Q 007283          231 GHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHG----KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI  305 (609)
Q Consensus       231 ~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i  305 (609)
                      .|+..|..++.++.. .+++|||.||+|++|+.+.-...    +...++...   +.....+..+.+++++++++.||.|
T Consensus      1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~---~sr~~~vt~~~~~~~~Av~t~DG~v 1122 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPE---GSRVEKVTMCGNGDQFAVSTKDGSV 1122 (1431)
T ss_pred             hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEecc---CCceEEEEeccCCCeEEEEcCCCeE
Confidence            588888899988765 99999999999999998642111    122222221   1122344555678899999999999


Q ss_pred             EEEeCCCCCCCce--e----eeCCC-CCeEEE-EEecCCC-CEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283          306 SIFSANDLEKSPL--Q----LSGHM-KNVTAL-TVLNIDP-KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI  376 (609)
Q Consensus       306 ~~~~~~~~~~~~~--~----~~~h~-~~v~~~-~~~~~~~-~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~  376 (609)
                      ++..++.......  +    ...+. +.+..+ ++..... ..++-+..-+.|..||.....                  
T Consensus      1123 ~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~------------------ 1184 (1431)
T KOG1240|consen 1123 RVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH------------------ 1184 (1431)
T ss_pred             EEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh------------------
Confidence            9998875311100  0    00010 111111 1111111 133333333334444321100                  


Q ss_pred             CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                                 .+|..  +                                              ... -...+++++++
T Consensus      1185 -----------~~w~l--k----------------------------------------------~~~-~hG~vTSi~id 1204 (1431)
T KOG1240|consen 1185 -----------DAWRL--K----------------------------------------------NQL-RHGLVTSIVID 1204 (1431)
T ss_pred             -----------hHHhh--h----------------------------------------------cCc-cccceeEEEec
Confidence                       00000  0                                              000 01348899999


Q ss_pred             CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC---CCEEEEEe--CCCeEEEEEccCCceEEeeec
Q 007283          457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD---VSMFASGD--VNREAIVWDRVSREVKLKNML  531 (609)
Q Consensus       457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~---~~~l~s~s--~d~~v~iwd~~~~~~~~~~~~  531 (609)
                      |.+.++++|+.-|.+-+||++-+....... ..+..+|..|...|-   ....++++  ..+.+-+|+++++......+.
T Consensus      1205 p~~~WlviGts~G~l~lWDLRF~~~i~sw~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1205 PWCNWLVIGTSRGQLVLWDLRFRVPILSWE-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred             CCceEEEEecCCceEEEEEeecCceeeccc-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEc
Confidence            999999999999999999997554332222 234466766665443   34555544  578899999887644322111


Q ss_pred             C------------------CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          532 Y------------------HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       532 ~------------------h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      .                  +.-....+.+-..+.++.+|+.|..|+.||...+
T Consensus      1284 s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1284 SDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             CCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            1                  1112233444445678899999999999998764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.36  E-value=2.5e-10  Score=115.57  Aligned_cols=218  Identities=14%  Similarity=0.124  Sum_probs=134.4

Q ss_pred             eEEeecCCCCe--EEEe---CC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe-CCC----cEEEEcCCC
Q 007283           20 ILISGHPKSNS--ILYT---NG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD-VSG----TVRIWGAHN   88 (609)
Q Consensus        20 ~~~~~~~~~~~--l~~~---~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~----~i~vWd~~~   88 (609)
                      +.=.++|||+.  ++|.   ++ ..|.+.++.++.... +....+.....+|||||+.||..+ .+|    .+.+|++..
T Consensus       188 ~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~-lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~  266 (428)
T PRK01029        188 ITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK-ILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLET  266 (428)
T ss_pred             ccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE-eecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeeccc
Confidence            34479999876  4443   23 578999998776543 333455667799999999998544 233    345577654


Q ss_pred             Cc-eeeEEEeec-ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC---CCeeEEEecCCccEEEEEEeeCCCeEEEE
Q 007283           89 DH-VLKKEFRVL-SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS---GTNVGEFDGHSRRVLSCAFKPSRPFRIAT  163 (609)
Q Consensus        89 ~~-~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~~p~~~~~i~t  163 (609)
                      +. .....+... .......+|||||++|+.+.+..+..  ++|.++.   +.....+..+...+....|+|+|..++.+
T Consensus       267 g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~--~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~  344 (428)
T PRK01029        267 GAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRP--RIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFC  344 (428)
T ss_pred             CCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCc--eEEEEECcccccceEEeccCCCCccceeECCCCCEEEEE
Confidence            21 111222222 23456789999999999887644332  3444432   22234444455567788999999875555


Q ss_pred             ecCC--CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccCcCCCCccceEE
Q 007283          164 CGED--FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS---DKKGIIYDGKTADKIGELSPEDGHKGSVYA  238 (609)
Q Consensus       164 ~~~d--~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~  238 (609)
                      ...+  ..+.+||...++......+ ...+....|+|||+.|+..+.   ...+.++|...++.. .+.   ...+.+..
T Consensus       345 ~~~~g~~~I~v~dl~~g~~~~Lt~~-~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~-~Lt---~~~g~~~~  419 (428)
T PRK01029        345 SVIKGVRQICVYDLATGRDYQLTTS-PENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTR-KIV---IGSGEKRF  419 (428)
T ss_pred             EcCCCCcEEEEEECCCCCeEEccCC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-Eee---cCCCcccC
Confidence            4433  4678888877765433322 335677899999998875543   346777887766532 222   12345667


Q ss_pred             EEECCCC
Q 007283          239 VSWSPDG  245 (609)
Q Consensus       239 l~~spd~  245 (609)
                      .+|+|..
T Consensus       420 p~Ws~~~  426 (428)
T PRK01029        420 PSWGAFP  426 (428)
T ss_pred             ceecCCC
Confidence            7888753

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=7e-09  Score=100.54  Aligned_cols=110  Identities=21%  Similarity=0.427  Sum_probs=83.7

Q ss_pred             CCceeEEEEcCCCCEEEE--EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeC---CCeEEEEEcc
Q 007283          447 RFPVTASAIAPDGSEAII--GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV---NREAIVWDRV  521 (609)
Q Consensus       447 ~~~~~~~~~sp~g~~l~~--gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~---d~~v~iwd~~  521 (609)
                      ..||.++.++|+++.+++  |-.--.+.|||++..     .++.--+++=+++-|+|.|.+++-++.   -|.|-+||+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~-----~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~  344 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK-----PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVP  344 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC-----EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEecc
Confidence            468999999999987655  445568999988654     334445678899999999999998875   5778999998


Q ss_pred             CCceEEeeecCCCCceEEEEECCCCcEEEEEeC------CCeEEEEEcC
Q 007283          522 SREVKLKNMLYHTARINCLAWSPNNSMVATGSL------DTCVIIYEID  564 (609)
Q Consensus       522 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~------D~~v~vw~~~  564 (609)
                      +.+.. ....  ...-+-++|+|||+++.|+..      |+.++||++.
T Consensus       345 n~K~i-~~~~--a~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  345 NRKLI-AKFK--AANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             chhhc-cccc--cCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence            75432 2222  234456899999999999874      6889999985

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=5e-10  Score=114.41  Aligned_cols=215  Identities=15%  Similarity=0.119  Sum_probs=131.5

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC-CC--cEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV-SG--TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR  114 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~-d~--~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~  114 (609)
                      .+.+.|...... +.+..+...+..++|||||++||..+. ++  .|.+||+.+++.  ..+....+.....+|||||++
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence            566777655443 335556778999999999999986543 33  477778876653  223333444567899999999


Q ss_pred             EEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCe--EEEEeCCCCceeee-ccCcccce
Q 007283          115 IVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL--VNFYEGPPFKFKLS-HRGHSNFV  191 (609)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~--i~~~~~~~~~~~~~-~~~h~~~v  191 (609)
                      |+.+.+..+...+.+++.+.+. ...+..+.......+|+|++..++.+...++.  +..++...++.... +.++  ..
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~  352 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGE--QN  352 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCC-eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCC--CC
Confidence            9876544333333334443333 33444555556778999999876666655544  44456655544332 2332  23


Q ss_pred             EEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC-Cc--EEEeecc
Q 007283          192 NCVRFSPDGSKFISVSSD-K--KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-KS--AKVWDIS  263 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-~~--i~iwd~~  263 (609)
                      ....|+|||++|+..+.+ +  .+.++|..+++. ..+..  .  .......|+|||++|+..+.+ +.  +.+++..
T Consensus       353 ~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~--~--~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~  425 (448)
T PRK04792        353 LGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTS--T--RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID  425 (448)
T ss_pred             cCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccC--C--CCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            456899999988776653 3  345567766653 22221  1  122345899999988776543 33  5555653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.33  E-value=3.6e-09  Score=104.39  Aligned_cols=329  Identities=16%  Similarity=0.093  Sum_probs=163.5

Q ss_pred             EEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283          160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV  239 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l  239 (609)
                      .+++-..++.+.+.|..+.+....+......-..+.|+|||+++.+++.|+.+.++|..+.+.+.++..    ...-.++
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~----G~~~~~i   83 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV----GGNPRGI   83 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-----SSEEEEE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec----CCCcceE
Confidence            345556778899999998887777654433334578999999999999999999999999998887742    2346789


Q ss_pred             EECCCCCeEEEEe-CCCcEEEeecccCCCCceEEEeccCCC-C-CccceEEEEE--EcCC-eEEEEEcCCcEEEEeCCCC
Q 007283          240 SWSPDGKQVLTAS-ADKSAKVWDISEDNHGKLKKTLTPSGS-G-GVDDMLVGCL--WQND-FLVIVSLGGTISIFSANDL  313 (609)
Q Consensus       240 ~~spd~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~--~~~~-~~~~~~~~g~i~~~~~~~~  313 (609)
                      ++||||++++++. .++.+.++|...   .+..+.+..... . .......+..  .... +++..-..+.+.+.++.+.
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~t---le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAET---LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT-----EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             EEcCCCCEEEEEecCCCceeEecccc---ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            9999999988775 589999999763   444444422110 0 0111122222  2233 3333344466666665543


Q ss_pred             CCCceeeeCCCCCeEEEEEecCCCCE-EEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEE
Q 007283          314 EKSPLQLSGHMKNVTALTVLNIDPKV-ILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRV  392 (609)
Q Consensus       314 ~~~~~~~~~h~~~v~~~~~~~~~~~~-~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~  392 (609)
                      .........-........+.+ ++++ +++.-.++.|-+++.......                             ..+
T Consensus       161 ~~~~~~~i~~g~~~~D~~~dp-dgry~~va~~~sn~i~viD~~~~k~v-----------------------------~~i  210 (369)
T PF02239_consen  161 KNLKVTTIKVGRFPHDGGFDP-DGRYFLVAANGSNKIAVIDTKTGKLV-----------------------------ALI  210 (369)
T ss_dssp             SCEEEEEEE--TTEEEEEE-T-TSSEEEEEEGGGTEEEEEETTTTEEE-----------------------------EEE
T ss_pred             cccceeeecccccccccccCc-ccceeeecccccceeEEEeeccceEE-----------------------------EEe
Confidence            222111111222333444433 3344 444455666666654332100                             000


Q ss_pred             eccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEE
Q 007283          393 SLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLR  472 (609)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~  472 (609)
                      +.  +..      .   ++....-.+|.        ..                 .++....  -.+...++.-....+.
T Consensus       211 ~~--g~~------p---~~~~~~~~php--------~~-----------------g~vw~~~--~~~~~~~~~ig~~~v~  252 (369)
T PF02239_consen  211 DT--GKK------P---HPGPGANFPHP--------GF-----------------GPVWATS--GLGYFAIPLIGTDPVS  252 (369)
T ss_dssp             E---SSS------B---EETTEEEEEET--------TT-----------------EEEEEEE--BSSSSEEEEEE--TTT
T ss_pred             ec--ccc------c---cccccccccCC--------Cc-----------------ceEEeec--cccceecccccCCccc
Confidence            00  000      0   00000000000        00                 0111111  1111121111223444


Q ss_pred             EEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEE----eCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcE
Q 007283          473 VYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG----DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSM  548 (609)
Q Consensus       473 iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~----s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~  548 (609)
                      +|+....+.  .+.+....++ .-+..+||+.++.+.    ....+|.++|..+.+............+..+.|++||++
T Consensus       253 v~d~~~wkv--v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~  329 (369)
T PF02239_consen  253 VHDDYAWKV--VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE  329 (369)
T ss_dssp             -STTTBTSE--EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred             cchhhcCeE--EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence            565554443  2334444444 777889999999988    456889999987764432211112234889999999997


Q ss_pred             EEEEeC--CCeEEEEEcCCC
Q 007283          549 VATGSL--DTCVIIYEIDKP  566 (609)
Q Consensus       549 l~s~s~--D~~v~vw~~~~~  566 (609)
                      +..+..  ++.|.+||..+.
T Consensus       330 v~vS~~~~~~~i~v~D~~Tl  349 (369)
T PF02239_consen  330 VWVSVWDGNGAIVVYDAKTL  349 (369)
T ss_dssp             EEEEEE--TTEEEEEETTTT
T ss_pred             EEEEEecCCCEEEEEECCCc
Confidence            654433  337999997653

...

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=6.2e-10  Score=114.22  Aligned_cols=215  Identities=15%  Similarity=0.132  Sum_probs=135.6

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR  114 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~  114 (609)
                      .+.+.|...... +.+..|...+..++|||||+.||..+.+   ..|.+|++.+++.  ..+....+.+...+|||||++
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence            477778765544 3355667789999999999999876543   3588889887653  223334455667999999999


Q ss_pred             EEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeee-ccCcccce
Q 007283          115 IVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLS-HRGHSNFV  191 (609)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~-~~~h~~~v  191 (609)
                      |+...+..+...+.+++.+.+. ...+..+........|+|++..++.+...++  .+..++...++.... +.+  ...
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~--~~~  333 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVG--NYN  333 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCC--CCc
Confidence            9866543333334444444443 3334455555667899999987555554444  455566655554322 222  223


Q ss_pred             EEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC-C--cEEEeecc
Q 007283          192 NCVRFSPDGSKFISVSSD-K--KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-K--SAKVWDIS  263 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-~--~i~iwd~~  263 (609)
                      ....|+|||+.|+..+.+ +  .+.++|..+++. ..+..    ........|+|||++++..+.+ +  .+.++++.
T Consensus       334 ~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~----~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~  406 (430)
T PRK00178        334 ARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV-RILTD----TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN  406 (430)
T ss_pred             cceEECCCCCEEEEEEccCCceEEEEEECCCCCE-EEccC----CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence            456899999998877653 3  477888877653 23321    1122356899999988877653 3  35555553

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.32  E-value=7.5e-10  Score=100.52  Aligned_cols=116  Identities=19%  Similarity=0.341  Sum_probs=79.0

Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeee--eEE------------EecCCCceEEEEECCCCCEEEEEeCCC
Q 007283          449 PVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTE--EAV------------LEKHRGAVSVIRYSPDVSMFASGDVNR  513 (609)
Q Consensus       449 ~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~--~~~------------~~~h~~~i~~v~~s~~~~~l~s~s~d~  513 (609)
                      .+++..|+| ....++-.+..|+||+-|++...+-.  ...            +.+--..|..+.||++|+++++-+. .
T Consensus       215 VITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-l  293 (433)
T KOG1354|consen  215 VITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-L  293 (433)
T ss_pred             HHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-c
Confidence            356677888 44567778889999999997432200  000            1111246889999999999998654 5


Q ss_pred             eEEEEEccCCceEEeeecCCC------------Cc---eEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          514 EAIVWDRVSREVKLKNMLYHT------------AR---INCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       514 ~v~iwd~~~~~~~~~~~~~h~------------~~---i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      ++++||+.-....+.....|.            +.   -..++||.++.+++||+..+..++++.+.
T Consensus       294 tvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  294 TVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             eeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCC
Confidence            899999743322222222232            22   24589999999999999999999999654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.31  E-value=3.7e-10  Score=115.38  Aligned_cols=214  Identities=15%  Similarity=0.207  Sum_probs=129.1

Q ss_pred             eEEeecCCCCeEEEeC---C-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCc--EEEEcCCCCcee
Q 007283           20 ILISGHPKSNSILYTN---G-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGT--VRIWGAHNDHVL   92 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~~---~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~--i~vWd~~~~~~~   92 (609)
                      +...++|||+.|+|..   + ..++++|+.+++... +..-.+....++|||||+.|| +.+.++.  |.+||+.+++. 
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-  298 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-  298 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-
Confidence            4678999999999862   2 478899998766432 222233455789999999887 4566775  56667766543 


Q ss_pred             eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                       ..+..+.......+|+|||++|+...+..+...+..++.+.+... .+..+.......+|+|++..++.+...++...+
T Consensus       299 -~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~-~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I  376 (448)
T PRK04792        299 -TRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS-RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNI  376 (448)
T ss_pred             -EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EEecCCCCCcCeeECCCCCEEEEEEecCCceEE
Confidence             234444455678899999999998876444333333333344322 222122223457899999876565544444444


Q ss_pred             --EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC-Cc--EEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283          173 --YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD-KK--GIIYDGKTADKIGELSPEDGHKGSVYAVSWSP  243 (609)
Q Consensus       173 --~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-~~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp  243 (609)
                        ++...++........  ......|+|||+.|+..+.+ +.  +.+++. ++.....+.   .+.+.+...+|+|
T Consensus       377 ~~~dl~~g~~~~lt~~~--~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~---~~~g~~~~p~Wsp  446 (448)
T PRK04792        377 ARQDLETGAMQVLTSTR--LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLP---AGQGEVKSPAWSP  446 (448)
T ss_pred             EEEECCCCCeEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECc---CCCCCcCCCccCC
Confidence              565555443222221  12244799999988776643 33  555565 444444342   3455677788887

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.30  E-value=1.3e-09  Score=105.63  Aligned_cols=201  Identities=16%  Similarity=0.178  Sum_probs=127.1

Q ss_pred             cCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283           55 EHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD  133 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  133 (609)
                      +|.+--+.|..||||+|| |||-....|+++|+.+-. ++.+=......|...-.|.|-..++....+..   +   ...
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS-LKFERhlDae~V~feiLsDD~SK~v~L~~DR~---I---efH  121 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS-LKFERHLDAEVVDFEILSDDYSKSVFLQNDRT---I---EFH  121 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce-eeeeecccccceeEEEeccchhhheEeecCce---e---eeh
Confidence            566777889999999998 567788999999997643 22211122445655556666444333322211   0   000


Q ss_pred             CCCeeE-EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          134 SGTNVG-EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       134 ~~~~~~-~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      .....+ .+. -...-..+.++.-..-+++.|+.. .+.-.+.+.+.....+.-....++++..++-..+|++|+.+|.+
T Consensus       122 ak~G~hy~~R-IP~~GRDm~y~~~scDly~~gsg~-evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~V  199 (703)
T KOG2321|consen  122 AKYGRHYRTR-IPKFGRDMKYHKPSCDLYLVGSGS-EVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVV  199 (703)
T ss_pred             hhcCeeeeee-cCcCCccccccCCCccEEEeecCc-ceEEEEccccccccccccccccceeeeecCccceEEecccCceE
Confidence            000000 000 001112334432222223333333 34444667777777777677889999999998899999999999


Q ss_pred             EEEeCCCCccccccCcC---CCCcc-----ceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          213 IIYDGKTADKIGELSPE---DGHKG-----SVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~---~~h~~-----~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      -.||.++.....++...   ..|.+     .|+++.|+.+|-.++.|+.+|.+.|||++.
T Consensus       200 EfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa  259 (703)
T KOG2321|consen  200 EFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRA  259 (703)
T ss_pred             EEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEccc
Confidence            99999987766554321   23444     499999999999999999999999999975

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.29  E-value=1.1e-10  Score=105.96  Aligned_cols=213  Identities=19%  Similarity=0.314  Sum_probs=149.3

Q ss_pred             CCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcC-CCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCc
Q 007283           46 NPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK  124 (609)
Q Consensus        46 ~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~-~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~  124 (609)
                      .+..++.++||.+.|+....-|-..-+.+.+.|.++|||-- +.++.-.........+++++++.++..+|++.-++.. 
T Consensus        13 kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt-   91 (404)
T KOG1409|consen   13 KPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT-   91 (404)
T ss_pred             chhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce-
Confidence            34456778999999999888888888999999999999943 2333211122345678999999999988876554332 


Q ss_pred             ceEEEEEcC----CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE---------------------------
Q 007283          125 SLVRAFMWD----SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY---------------------------  173 (609)
Q Consensus       125 ~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~---------------------------  173 (609)
                        +.-+...    +-..+.....|..+|..+-|+..-.. +++++.|..+.+-                           
T Consensus        92 --vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~-V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~  168 (404)
T KOG1409|consen   92 --VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEW-VLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYA  168 (404)
T ss_pred             --EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCcee-EEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEE
Confidence              1112211    12223445577888888877654443 5555555443221                           


Q ss_pred             -e-------------CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283          174 -E-------------GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV  239 (609)
Q Consensus       174 -~-------------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l  239 (609)
                       +             ......+..+.+|...+.+++|.|....|.+|..|..+++||+--.+.+...  ..+|...|..+
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~e--l~gh~~kV~~l  246 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYE--LQGHNDKVQAL  246 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeee--eccchhhhhhh
Confidence             0             0112233457889999999999999999999999999999997655443322  34899999999


Q ss_pred             EECCCCCeEEEEeCCCcEEEeeccc
Q 007283          240 SWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       240 ~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      ...+--+.|.+++.||.|-+|+++.
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~mn~  271 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWNMNV  271 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEeccc
Confidence            9888889999999999999999864

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=8.8e-10  Score=113.13  Aligned_cols=217  Identities=13%  Similarity=0.124  Sum_probs=133.0

Q ss_pred             ceeEEeecCCCCeEEEeC---C-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCC--cEEEEcCCCCc
Q 007283           18 RGILISGHPKSNSILYTN---G-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSG--TVRIWGAHNDH   90 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~---~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~--~i~vWd~~~~~   90 (609)
                      ......++|||+.|+|..   + ..+.++++.+++... +....+.+..++|||||++|+ +.+.++  .|.+||+.+++
T Consensus       200 ~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~  278 (430)
T PRK00178        200 PILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQ  278 (430)
T ss_pred             ceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCC
Confidence            345778999999998863   2 478999998776543 333345566799999999887 555555  57777887765


Q ss_pred             eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--
Q 007283           91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--  168 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--  168 (609)
                      .  ..+..+........|+|||++|+...+..+...+..++.+.+.. ..+...........|+|++..++.+...++  
T Consensus       279 ~--~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~-~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~  355 (430)
T PRK00178        279 L--SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA-ERVTFVGNYNARPRLSADGKTLVMVHRQDGNF  355 (430)
T ss_pred             e--EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccceEECCCCCEEEEEEccCCce
Confidence            3  23444455567789999999998887654433333334334432 222211222345689999987555554443  


Q ss_pred             eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC-C--cEEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283          169 LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD-K--KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD  244 (609)
Q Consensus       169 ~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd  244 (609)
                      .+.++|..+++........  ......|+|||+.++..+.+ +  .+.+.+... .....+.   .+.+.+...+|+|-
T Consensus       356 ~l~~~dl~tg~~~~lt~~~--~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~---~~~g~~~~p~ws~~  428 (430)
T PRK00178        356 HVAAQDLQRGSVRILTDTS--LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLP---TAQGEVREPSWSPY  428 (430)
T ss_pred             EEEEEECCCCCEEEccCCC--CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECc---CCCCCcCCCccCCC
Confidence            4666777665543322221  22345899999988877654 3  355556533 2222232   23456677777763

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.29  E-value=9.9e-09  Score=101.50  Aligned_cols=246  Identities=15%  Similarity=0.195  Sum_probs=154.9

Q ss_pred             cCceeEEeecCCCCeEEEeC-----CCEEEEEeCCCC-cccccc---ccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEc
Q 007283           16 RGRGILISGHPKSNSILYTN-----GRSVIILDLSNP-LQVSIY---GEHAYPATVARFSPNGEWIASAD-VSGTVRIWG   85 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~-----~~~~~i~~~~~~-~~~~~~---~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd   85 (609)
                      -+.|.-+..+|+++.|+..+     ...|..|++... ..+..+   ......--.++++|+|++|+.+. .+|+|.+++
T Consensus        36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~  115 (345)
T PF10282_consen   36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFP  115 (345)
T ss_dssp             SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEE
Confidence            34556788899998776653     248888888664 222221   11223356789999999999887 589999999


Q ss_pred             CCCCceeeEE--Eeec-----------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-e---EEEe-cCCcc
Q 007283           86 AHNDHVLKKE--FRVL-----------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-V---GEFD-GHSRR  147 (609)
Q Consensus        86 ~~~~~~~~~~--~~~~-----------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~---~~~~-~h~~~  147 (609)
                      +.....+...  ...+           ....-.+.|+|||++++++.-+.+  .+.++.++.... +   ..+. .....
T Consensus       116 l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D--~v~~~~~~~~~~~l~~~~~~~~~~G~G  193 (345)
T PF10282_consen  116 LDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD--RVYVYDIDDDTGKLTPVDSIKVPPGSG  193 (345)
T ss_dssp             ECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT--EEEEEEE-TTS-TEEEEEEEECSTTSS
T ss_pred             ccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC--EEEEEEEeCCCceEEEeeccccccCCC
Confidence            9864322221  1111           123467999999999998876655  467777776541 2   2222 22345


Q ss_pred             EEEEEEeeCCCeEEEEecCCCeEEEEeCC--CCcee--ee---c-cC--cccceEEEEEcCCCCEEEEEe-CCCcEEEEe
Q 007283          148 VLSCAFKPSRPFRIATCGEDFLVNFYEGP--PFKFK--LS---H-RG--HSNFVNCVRFSPDGSKFISVS-SDKKGIIYD  216 (609)
Q Consensus       148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~--~~~~~--~~---~-~~--h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd  216 (609)
                      -..+.|+|++.+.++++-.+..+.+++..  .++..  ..   + .+  .......++++|||++|.++. ....|.+|+
T Consensus       194 PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~  273 (345)
T PF10282_consen  194 PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFD  273 (345)
T ss_dssp             EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEE
T ss_pred             CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEE
Confidence            67899999999888888888889888765  33222  11   1 11  122578899999999876655 466889998


Q ss_pred             CC--CCccccccCcCCCCccceEEEEECCCCCeEEEEe-CCCcEEEeeccc
Q 007283          217 GK--TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS-ADKSAKVWDISE  264 (609)
Q Consensus       217 ~~--~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~d~~i~iwd~~~  264 (609)
                      +.  +++ +..+.........-..+.++|+|++|+++. .++.|.+|+++.
T Consensus       274 ~d~~~g~-l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  274 LDPATGT-LTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             ECTTTTT-EEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             EecCCCc-eEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence            73  233 222111111122367899999999988886 467899998753

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.29  E-value=3.1e-07  Score=90.87  Aligned_cols=183  Identities=16%  Similarity=0.179  Sum_probs=110.5

Q ss_pred             CcEEEEcCC--CCceeeEEEeecccceeEEEECCCCCEEEEEECCC-CcceEEEEEcCCC-CeeE---EEecCCccEEEE
Q 007283           79 GTVRIWGAH--NDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK-GKSLVRAFMWDSG-TNVG---EFDGHSRRVLSC  151 (609)
Q Consensus        79 ~~i~vWd~~--~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-~~~~~~~~~~~~~-~~~~---~~~~h~~~v~~~  151 (609)
                      +.|.+|+++  +++...............++++|++++|.++.... ....+..+.++.. ..+.   ...........+
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i   92 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHI   92 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEE
Confidence            678888883  33322111122345678899999999999998753 3334555666554 2222   222233445678


Q ss_pred             EEeeCCCeEEEEecCCCeEEEEeCCC-Cceeee---c----------cCcccceEEEEEcCCCCEEEEEeC-CCcEEEEe
Q 007283          152 AFKPSRPFRIATCGEDFLVNFYEGPP-FKFKLS---H----------RGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYD  216 (609)
Q Consensus       152 ~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~~~---~----------~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd  216 (609)
                      +++|++.+++++...++.+.+++... ++....   .          +.......++.|+|||+++++... ...|.+|+
T Consensus        93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~  172 (345)
T PF10282_consen   93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD  172 (345)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence            99999998777777789999997654 332221   1          112245789999999998776643 44788888


Q ss_pred             CCCCcc-cc---ccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecc
Q 007283          217 GKTADK-IG---ELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDIS  263 (609)
Q Consensus       217 ~~~~~~-~~---~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~  263 (609)
                      ...... +.   .+..  .....=..+.|+|+++++..... +++|.++++.
T Consensus       173 ~~~~~~~l~~~~~~~~--~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  173 IDDDTGKLTPVDSIKV--PPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             E-TTS-TEEEEEEEEC--STTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EeCCCceEEEeecccc--ccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            765441 21   1111  22344678999999988766653 5677777654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.28  E-value=7e-09  Score=95.02  Aligned_cols=236  Identities=17%  Similarity=0.209  Sum_probs=145.6

Q ss_pred             EEeecCCCCeE-EEeCCCEEEEEeCCCCccccccc-cCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceeeE---
Q 007283           21 LISGHPKSNSI-LYTNGRSVIILDLSNPLQVSIYG-EHAYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHVLKK---   94 (609)
Q Consensus        21 ~~~~~~~~~~l-~~~~~~~~~i~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~~~~---   94 (609)
                      -++.|+-=..+ +..++..|++|+-+.. ....+. ....+|+|++|-|.+. -||.|.. +-|.||......-..+   
T Consensus       103 ~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~  180 (445)
T KOG2139|consen  103 GVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIR  180 (445)
T ss_pred             eEeechhhhhhhhhccCcEEEEeccCCC-CCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccc
Confidence            46777622222 3346789999998773 333343 3346899999999764 4555554 5599997653210001   


Q ss_pred             --------EEeec-ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEec
Q 007283           95 --------EFRVL-SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCG  165 (609)
Q Consensus        95 --------~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~  165 (609)
                              .++.. ..+|+.++|.+||..|++.+-+.  .-+.+|+.+.+........-.+.+.-+.|+||+.. +..+.
T Consensus       181 ~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gs--ssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~-lfaAt  257 (445)
T KOG2139|consen  181 MMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGS--SSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDV-LFAAT  257 (445)
T ss_pred             cccccchhheeCCCCceeeEEEEcCCCCEEeecccCc--ceEEEEcCCCCCcccccccCCCceeeEEEcCCCCE-EEEec
Confidence                    11111 24799999999999999876543  34667777777655444344567888999999997 44567


Q ss_pred             CCCeEEEE-eCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC----CCCccc-----------cccCc-
Q 007283          166 EDFLVNFY-EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG----KTADKI-----------GELSP-  228 (609)
Q Consensus       166 ~d~~i~~~-~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~----~~~~~~-----------~~~~~-  228 (609)
                      -|...++| ....+...+-.-+. +.|....|+|+|++|+.+... .-++|..    +.....           ..+.. 
T Consensus       258 ~davfrlw~e~q~wt~erw~lgs-grvqtacWspcGsfLLf~~sg-sp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~  335 (445)
T KOG2139|consen  258 CDAVFRLWQENQSWTKERWILGS-GRVQTACWSPCGSFLLFACSG-SPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV  335 (445)
T ss_pred             ccceeeeehhcccceecceeccC-CceeeeeecCCCCEEEEEEcC-CceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence            78889999 44444433332232 378999999999977655432 2233321    111110           00100 


Q ss_pred             --CCC---CccceEEEEECCCCCeEEEEeCCC--------cEEEeecc
Q 007283          229 --EDG---HKGSVYAVSWSPDGKQVLTASADK--------SAKVWDIS  263 (609)
Q Consensus       229 --~~~---h~~~V~~l~~spd~~~l~s~s~d~--------~i~iwd~~  263 (609)
                        ..+   -.+.+.+++|.|.|.+|++.=..+        .|.+||.+
T Consensus       336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr  383 (445)
T KOG2139|consen  336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTR  383 (445)
T ss_pred             hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhccc
Confidence              011   246789999999999999875432        35566654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.27  E-value=2.4e-08  Score=95.69  Aligned_cols=111  Identities=16%  Similarity=0.246  Sum_probs=81.6

Q ss_pred             CCceeEEEEcCCCCEEEEE--eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC---CeEEEEEcc
Q 007283          447 RFPVTASAIAPDGSEAIIG--SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN---REAIVWDRV  521 (609)
Q Consensus       447 ~~~~~~~~~sp~g~~l~~g--s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d---~~v~iwd~~  521 (609)
                      ..+|...++.|.+..+++.  -.+..+-+++++++ +    ......+.=+.+.|||.+++++.++.|   +.+-+||..
T Consensus       274 ~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l----~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~  348 (561)
T COG5354         274 KDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-L----RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPA  348 (561)
T ss_pred             cccceeeeecccCCceeEEecccccceeecccccc-e----EEecCCcccccccccCcccEEEEecCCccccceEEeccC
Confidence            4678888999988876554  46788999998765 2    233345556778899999999998765   568999987


Q ss_pred             CCceEEeeecCCCCceEEEEECCCCcEEEEEe------CCCeEEEEEcC
Q 007283          522 SREVKLKNMLYHTARINCLAWSPNNSMVATGS------LDTCVIIYEID  564 (609)
Q Consensus       522 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s------~D~~v~vw~~~  564 (609)
                      ++......+.+.  ...-+.||||++++-++.      .|..|++||+.
T Consensus       349 ~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~  395 (561)
T COG5354         349 GRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVY  395 (561)
T ss_pred             CceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEec
Confidence            765544334333  344579999999987764      57889999985

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.27  E-value=1.1e-07  Score=99.15  Aligned_cols=182  Identities=25%  Similarity=0.285  Sum_probs=138.9

Q ss_pred             eEEEeCCCEEEEEeCCCCccccccc-cCCCC---cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeE
Q 007283           30 SILYTNGRSVIILDLSNPLQVSIYG-EHAYP---ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD  105 (609)
Q Consensus        30 ~l~~~~~~~~~i~~~~~~~~~~~~~-~h~~~---v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~  105 (609)
                      ..+....+.+.|+|........... ..+-.   .--+.++++-=++++|+.-+.|.+|+......- ..+.+|.+.|..
T Consensus       102 i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p-~~l~GHeG~iF~  180 (967)
T KOG0974|consen  102 IALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKP-IRLKGHEGSIFS  180 (967)
T ss_pred             EEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCc-ceecccCCceEE
Confidence            3344556788899887766544332 22211   222346888889999999999999998743321 247799999999


Q ss_pred             EEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec
Q 007283          106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH  184 (609)
Q Consensus       106 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~  184 (609)
                      +.||-||.++++++|+.   .+|+|..++.+.+. ..-+|+.+|+.+.|+|.   .++|++.|.+.++|+..-.... .+
T Consensus       181 i~~s~dg~~i~s~SdDR---siRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~l~-~y  253 (967)
T KOG0974|consen  181 IVTSLDGRYIASVSDDR---SIRLWPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQLE-VY  253 (967)
T ss_pred             EEEccCCcEEEEEecCc---ceeeeecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccceeh-hh
Confidence            99999999999999877   46888888766554 55689999999999998   5999999999999954332232 66


Q ss_pred             cCcc-cceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007283          185 RGHS-NFVNCVRFSPDGSKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       185 ~~h~-~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~  219 (609)
                      .+|. +.+..++..++...++|++.|+.+++|+...
T Consensus       254 ~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  254 DEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             hhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            6665 4688999999988999999999999998543

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.26  E-value=3.3e-09  Score=102.81  Aligned_cols=279  Identities=16%  Similarity=0.219  Sum_probs=181.5

Q ss_pred             cCceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccccC--CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 007283           16 RGRGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEH--AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV   91 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h--~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~   91 (609)
                      -...+.|..+|||+++..++  -..|.+||+.+....  |.-|  .+.|....++.|=..++--..|.+|.+=.- .+. 
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak-~G~-  126 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAK-YGR-  126 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhh-cCe-
Confidence            34445789999999986654  378999999875442  5555  356777777877777777777888865432 111 


Q ss_pred             eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                       ....+ ....-..++++.-.--|+.+|.+.+   +.-..++.|.-+..|......+++|...|-.. .|++|+.++.+.
T Consensus       127 -hy~~R-IP~~GRDm~y~~~scDly~~gsg~e---vYRlNLEqGrfL~P~~~~~~~lN~v~in~~hg-Lla~Gt~~g~VE  200 (703)
T KOG2321|consen  127 -HYRTR-IPKFGRDMKYHKPSCDLYLVGSGSE---VYRLNLEQGRFLNPFETDSGELNVVSINEEHG-LLACGTEDGVVE  200 (703)
T ss_pred             -eeeee-cCcCCccccccCCCccEEEeecCcc---eEEEEccccccccccccccccceeeeecCccc-eEEecccCceEE
Confidence             11111 1222345555543223344444433   22335566766667777788999999999887 488899999999


Q ss_pred             EEeCCCCceeeec------cCcc-----cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283          172 FYEGPPFKFKLSH------RGHS-----NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVS  240 (609)
Q Consensus       172 ~~~~~~~~~~~~~------~~h~-----~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~  240 (609)
                      +||.........+      ..|.     ..|+++.|+.+|-.+++|+.+|.++|||+++.+.+..-.  .+..-+|..+.
T Consensus       201 fwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd--h~~e~pi~~l~  278 (703)
T KOG2321|consen  201 FWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD--HGYELPIKKLD  278 (703)
T ss_pred             EecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc--cCCccceeeec
Confidence            9997654333221      2232     359999999999999999999999999999887664331  13345788999


Q ss_pred             ECCC--CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCC
Q 007283          241 WSPD--GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLE  314 (609)
Q Consensus       241 ~spd--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~  314 (609)
                      |-+.  +..++|. ....++|||-..   ++....+.+..  .+.+  ++...+..+++++..+..+..|.+....
T Consensus       279 ~~~~~~q~~v~S~-Dk~~~kiWd~~~---Gk~~asiEpt~--~lND--~C~~p~sGm~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  279 WQDTDQQNKVVSM-DKRILKIWDECT---GKPMASIEPTS--DLND--FCFVPGSGMFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             ccccCCCceEEec-chHHhhhccccc---CCceeeccccC--CcCc--eeeecCCceEEEecCCCcceeEEccccC
Confidence            9775  3445544 346789999763   44433332221  1222  3334456788888888888888776554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.25  E-value=1.7e-09  Score=98.99  Aligned_cols=218  Identities=13%  Similarity=0.223  Sum_probs=130.7

Q ss_pred             eeEEeecCCCCeEEEe--CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEE
Q 007283           19 GILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF   96 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~   96 (609)
                      +..+...+||..++..  .+..+.|||..++.-......--+.++-+.|||||.+|..+.-|++.+||........ ...
T Consensus       198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~-erw  276 (445)
T KOG2139|consen  198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTK-ERW  276 (445)
T ss_pred             eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhccccee-cce
Confidence            3467889999888765  4579999999887654433223467999999999999999999999999965433211 123


Q ss_pred             eecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC
Q 007283           97 RVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP  176 (609)
Q Consensus        97 ~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~  176 (609)
                      ...++.|...+|+|+|.+|+.+..+..                       .++++.|........-.++.....-+-|..
T Consensus       277 ~lgsgrvqtacWspcGsfLLf~~sgsp-----------------------~lysl~f~~~~~~~~~~~~~k~~lliaDL~  333 (445)
T KOG2139|consen  277 ILGSGRVQTACWSPCGSFLLFACSGSP-----------------------RLYSLTFDGEDSVFLRPQSIKRVLLIADLQ  333 (445)
T ss_pred             eccCCceeeeeecCCCCEEEEEEcCCc-----------------------eEEEEeecCCCccccCcccceeeeeeccch
Confidence            345669999999999999887654432                       344555543332111122222222333322


Q ss_pred             CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCc--------EEEEeCCCCccccccC--cC-CCCccceEEEEECC--
Q 007283          177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK--------GIIYDGKTADKIGELS--PE-DGHKGSVYAVSWSP--  243 (609)
Q Consensus       177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~--------i~iwd~~~~~~~~~~~--~~-~~h~~~V~~l~~sp--  243 (609)
                      .......-.--.+.+.+++|.|.|.+||+.-..+.        |.+||.+..-......  .. ..|   =..++|+|  
T Consensus       334 e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~---P~~IsF~pl~  410 (445)
T KOG2139|consen  334 EVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEY---PAYISFGPLK  410 (445)
T ss_pred             hhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCC---CceEEeeecc
Confidence            11110011112356889999999999998754433        4456544322111110  00 012   23455665  


Q ss_pred             -CCCeEEEEeCCCcEEEeecc
Q 007283          244 -DGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       244 -d~~~l~s~s~d~~i~iwd~~  263 (609)
                       ++.+|..+-..|.+.-|++.
T Consensus       411 n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  411 NEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             cCCcEEEEEeccCceEeeeeE
Confidence             56677777677888777653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.23  E-value=6.1e-06  Score=90.87  Aligned_cols=320  Identities=14%  Similarity=0.170  Sum_probs=175.8

Q ss_pred             CccCcCceeEEeecCCCCeEEEe-CCCEEEEE----eCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEE--
Q 007283           12 PSTERGRGILISGHPKSNSILYT-NGRSVIIL----DLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW--   84 (609)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~i~----~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vW--   84 (609)
                      |....+....+..-++.+.|+.. .++.|++.    +..+... -.-+.=...|.+++||||+.+||-+..++++.+=  
T Consensus        71 ~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~  149 (928)
T PF04762_consen   71 PDDPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTR  149 (928)
T ss_pred             CcCCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEec
Confidence            44556677788888887655443 34556666    4333222 1223335679999999999999988778776443  


Q ss_pred             --cCCC---------C--ce-------eeEEEeec------------------------ccceeEEEECCCCCEEEEEEC
Q 007283           85 --GAHN---------D--HV-------LKKEFRVL------------------------SGRIDDLQWSPDGLRIVACGD  120 (609)
Q Consensus        85 --d~~~---------~--~~-------~~~~~~~~------------------------~~~v~~~~~spdg~~l~~~~~  120 (609)
                        |.-.         +  +.       ..++|++.                        ...-..++|..||+++++..-
T Consensus       150 ~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~  229 (928)
T PF04762_consen  150 DFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSV  229 (928)
T ss_pred             cceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEE
Confidence              2211         0  00       00122111                        112356889999999887663


Q ss_pred             --CCC-cceEEEEEcCCCCeeEEEecC-CccEEEEEEeeCCCeEEEEecC---CCeEEEEeC---CCCceeeeccCcccc
Q 007283          121 --GKG-KSLVRAFMWDSGTNVGEFDGH-SRRVLSCAFKPSRPFRIATCGE---DFLVNFYEG---PPFKFKLSHRGHSNF  190 (609)
Q Consensus       121 --~~~-~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~i~t~~~---d~~i~~~~~---~~~~~~~~~~~h~~~  190 (609)
                        ..+ ...+  ..|+....+...... .+--..++|.|.|.. ||+.-.   ...|.+|+-   +-++....+......
T Consensus       230 ~~~~~~~R~i--RVy~ReG~L~stSE~v~gLe~~l~WrPsG~l-IA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~  306 (928)
T PF04762_consen  230 EPETGSRRVI--RVYSREGELQSTSEPVDGLEGALSWRPSGNL-IASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEK  306 (928)
T ss_pred             EcCCCceeEE--EEECCCceEEeccccCCCccCCccCCCCCCE-EEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCce
Confidence              222 3344  455554333322221 112236799999985 665533   355667762   223333333345667


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCc
Q 007283          191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGK  269 (609)
Q Consensus       191 v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~  269 (609)
                      |..+.|++|+..||....|. |.+|-..+.+--............+..+.|+|... .|...+.++.+..++..-     
T Consensus       307 v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-----  380 (928)
T PF04762_consen  307 VIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-----  380 (928)
T ss_pred             eeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE-----
Confidence            99999999999999877665 99997655442111111112233455699999654 466666667777665431     


Q ss_pred             eEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCce----eeeCCCCCeEEEEEecCCCCEEEEEec
Q 007283          270 LKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPL----QLSGHMKNVTALTVLNIDPKVILSSSY  345 (609)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~----~~~~h~~~v~~~~~~~~~~~~~~t~s~  345 (609)
                       .-... .....          ++.-.+.+-.+.++.+-.+....-++.    .+. -...|..++|.... ..++.-..
T Consensus       381 -~v~~s-~~~~~----------~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~~~-~~~avl~~  446 (928)
T PF04762_consen  381 -DVSRS-PGSSP----------NDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSPSN-SRFAVLTS  446 (928)
T ss_pred             -EEEec-CCCCc----------cCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeCCC-CeEEEEEC
Confidence             00000 00000          011112222233344444433322221    222 34678899987543 34888889


Q ss_pred             CCcEEEEecC
Q 007283          346 DGLIVKWIQG  355 (609)
Q Consensus       346 dg~i~~W~~~  355 (609)
                      ||++.+|...
T Consensus       447 d~~l~~~~~~  456 (928)
T PF04762_consen  447 DGSLSIYEWD  456 (928)
T ss_pred             CCCEEEEEec
Confidence            9999998643

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.22  E-value=3.5e-11  Score=113.25  Aligned_cols=228  Identities=14%  Similarity=0.142  Sum_probs=174.5

Q ss_pred             eeEEeecCCCCeEEEeCC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283           19 GILISGHPKSNSILYTNG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR   97 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~   97 (609)
                      |+.+..+.+|.+|+..+. +-+..+|..+.+....+.- ...|..++|-.+-+++|.++. .-+.|||-..-+ + +-+.
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v-~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~GtE-l-HClk  207 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINV-METVRDVTFLHNEQFFAVAQK-KYVYVYDNNGTE-L-HCLK  207 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeeeh-hhhhhhhhhhcchHHHHhhhh-ceEEEecCCCcE-E-eehh
Confidence            568888889999887753 5677788888777655543 456899999999999999965 568888864332 1 1122


Q ss_pred             ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283           98 VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP  177 (609)
Q Consensus        98 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~  177 (609)
                      . ..+|..+.|-|---.|+++++.   ..+++.+...++.+..+..-.+.+..+.-.|-+. ++-+|...|++.+|....
T Consensus       208 ~-~~~v~rLeFLPyHfLL~~~~~~---G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~Na-Vih~GhsnGtVSlWSP~s  282 (545)
T KOG1272|consen  208 R-HIRVARLEFLPYHFLLVAASEA---GFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNA-VIHLGHSNGTVSLWSPNS  282 (545)
T ss_pred             h-cCchhhhcccchhheeeecccC---CceEEEeechhhhhHHHHccCCccchhhcCCccc-eEEEcCCCceEEecCCCC
Confidence            2 2358889999987566665532   3578888889998888887788888888889876 588999999999999776


Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA  257 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i  257 (609)
                      .+....+..|.++|.++++.++|.++||.+.|..++|||++.-..+.++..    .-....++||..|  ++..|....+
T Consensus       283 kePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t----p~~a~~ls~Sqkg--lLA~~~G~~v  356 (545)
T KOG1272|consen  283 KEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT----PHPASNLSLSQKG--LLALSYGDHV  356 (545)
T ss_pred             cchHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec----CCCcccccccccc--ceeeecCCee
Confidence            666666778999999999999999999999999999999998776655431    2346678887665  4455566789


Q ss_pred             EEee
Q 007283          258 KVWD  261 (609)
Q Consensus       258 ~iwd  261 (609)
                      .||.
T Consensus       357 ~iw~  360 (545)
T KOG1272|consen  357 QIWK  360 (545)
T ss_pred             eeeh
Confidence            9995

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=99.21  E-value=3e-10  Score=105.49  Aligned_cols=155  Identities=17%  Similarity=0.179  Sum_probs=110.0

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCee----eeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL----TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV  525 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~----~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~  525 (609)
                      ...+..+|.++++|.+..+....++++.....    ........-...+..+..+........++....+.+|....  .
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--~  142 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--G  142 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc--c
Confidence            34556789999999999998888888764431    11111122223334333333333333444555556665443  2


Q ss_pred             EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEE
Q 007283          526 KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       526 ~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~  605 (609)
                      ....+.+|-..++.++||||++++.|++.|..|+|=.++..- ....++.||..-|..++..++..|+|+|.|+++++|+
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f-~IesfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF-VIESFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWD  221 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc-chhhhccccHhheeeeeeccCceeeecCCCCcEEEEe
Confidence            234567899999999999999999999999999998776422 3345677999999999999988999999999999999


Q ss_pred             cc
Q 007283          606 LT  607 (609)
Q Consensus       606 ~~  607 (609)
                      +.
T Consensus       222 ~~  223 (390)
T KOG3914|consen  222 IT  223 (390)
T ss_pred             cc
Confidence            85

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.20  E-value=2.3e-09  Score=109.99  Aligned_cols=187  Identities=16%  Similarity=0.194  Sum_probs=120.8

Q ss_pred             ceeEEeecCCCCeEEEeC----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCC--cEEEEcCCCCc
Q 007283           18 RGILISGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSG--TVRIWGAHNDH   90 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~--~i~vWd~~~~~   90 (609)
                      ......++|||+.|+|..    ...+++|++.+++... +..+.+.+.+++|+|||+.|+ +.+.++  .|.+|++.+++
T Consensus       191 ~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~  269 (417)
T TIGR02800       191 PILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQ  269 (417)
T ss_pred             ceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCC
Confidence            345677999999999863    2579999998876543 444566778899999999876 455444  57888887654


Q ss_pred             eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--
Q 007283           91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--  168 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--  168 (609)
                      .  ..+..+.......+|+|||++|+.+++..+...+..++.+.+. ...+..+...+....|+|++..++.+....+  
T Consensus       270 ~--~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~-~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~  346 (417)
T TIGR02800       270 L--TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE-VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGF  346 (417)
T ss_pred             E--EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC-EEEeecCCCCccCeEECCCCCEEEEEEccCCce
Confidence            2  2333444445678999999999888764433333333333333 3334445556778899999986444443322  


Q ss_pred             eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283          169 LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       169 ~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                      .+.+++.......... .. .......|+|||+.|+.++.++
T Consensus       347 ~i~~~d~~~~~~~~l~-~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       347 NIAVMDLDGGGERVLT-DT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             EEEEEeCCCCCeEEcc-CC-CCCCCceECCCCCEEEEEEeCC
Confidence            5777776654332222 11 1234568999999888777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.20  E-value=4.3e-08  Score=96.80  Aligned_cols=310  Identities=19%  Similarity=0.230  Sum_probs=164.3

Q ss_pred             CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283           35 NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR  114 (609)
Q Consensus        35 ~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~  114 (609)
                      ..+.+.+.|..+.+.+..+......-..+.|+|||+++..++.||.|.++|+.+.+.+. +++.- .....+++||||++
T Consensus        14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~-~i~~G-~~~~~i~~s~DG~~   91 (369)
T PF02239_consen   14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVA-TIKVG-GNPRGIAVSPDGKY   91 (369)
T ss_dssp             GGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEE-EEE-S-SEEEEEEE--TTTE
T ss_pred             CCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEE-EEecC-CCcceEEEcCCCCE
Confidence            35899999999988887776543334557899999999999999999999999987544 34332 34678999999999


Q ss_pred             EEEEECCCCcceEEEEEcCCCCeeEEEec-------CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-eeeeccC
Q 007283          115 IVACGDGKGKSLVRAFMWDSGTNVGEFDG-------HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-FKLSHRG  186 (609)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-~~~~~~~  186 (609)
                      ++++....+  .+.+++-++.+.+..+..       ...++..+..+|..+..+++--.-+.+-+-|....+ .......
T Consensus        92 ~~v~n~~~~--~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~  169 (369)
T PF02239_consen   92 VYVANYEPG--TVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIK  169 (369)
T ss_dssp             EEEEEEETT--EEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE
T ss_pred             EEEEecCCC--ceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeec
Confidence            987763332  345556556666665542       234677787788887534443333545444543322 2222323


Q ss_pred             cccceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccccCc-CCCCccceEEEE-------EC--CCCCeEEEEeCCC
Q 007283          187 HSNFVNCVRFSPDGSKFISV-SSDKKGIIYDGKTADKIGELSP-EDGHKGSVYAVS-------WS--PDGKQVLTASADK  255 (609)
Q Consensus       187 h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~-------~s--pd~~~l~s~s~d~  255 (609)
                      -........|+|++++++.+ -.+..+.++|.++++....+.. ...|.+.+..+-       |.  ..+...++.-...
T Consensus       170 ~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~  249 (369)
T PF02239_consen  170 VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTD  249 (369)
T ss_dssp             --TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--
T ss_pred             ccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCC
Confidence            34567788999999987665 4566888999888776543321 112444443321       11  1223332222233


Q ss_pred             cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEE----EcCCcEEEEeCCCCCCCceeee-CCCCCeEEE
Q 007283          256 SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV----SLGGTISIFSANDLEKSPLQLS-GHMKNVTAL  330 (609)
Q Consensus       256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~g~i~~~~~~~~~~~~~~~~-~h~~~v~~~  330 (609)
                      .+.+||..   ..+..+++...+.+    ..+....+..++.+.    ...+.+.+++...... ...+. +-...+..+
T Consensus       250 ~v~v~d~~---~wkvv~~I~~~G~g----lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~-~~~i~~~~~~~~~h~  321 (369)
T PF02239_consen  250 PVSVHDDY---AWKVVKTIPTQGGG----LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKV-VKTITPGPGKRVVHM  321 (369)
T ss_dssp             TTT-STTT---BTSEEEEEE-SSSS------EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEE-EE-HHHHHT--EEEE
T ss_pred             ccccchhh---cCeEEEEEECCCCc----ceeecCCCCccEEeeccCCCCCceEEEEECcCcce-eEEEeccCCCcEecc
Confidence            55566654   24555555443322    122222334455554    2346788888765421 11221 111236777


Q ss_pred             EEecCCCCEEEEEecCC-cEEEEecCc
Q 007283          331 TVLNIDPKVILSSSYDG-LIVKWIQGI  356 (609)
Q Consensus       331 ~~~~~~~~~~~t~s~dg-~i~~W~~~~  356 (609)
                      .|........+|.-..+ .|.++|..+
T Consensus       322 ef~~dG~~v~vS~~~~~~~i~v~D~~T  348 (369)
T PF02239_consen  322 EFNPDGKEVWVSVWDGNGAIVVYDAKT  348 (369)
T ss_dssp             EE-TTSSEEEEEEE--TTEEEEEETTT
T ss_pred             EECCCCCEEEEEEecCCCEEEEEECCC
Confidence            77754444444444444 688887654

...

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.18  E-value=5.7e-09  Score=96.63  Aligned_cols=203  Identities=12%  Similarity=0.168  Sum_probs=142.2

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce---eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283           57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV---LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD  133 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  133 (609)
                      +.+|..++.. ||. |.++-.+|.+++|....+..   ....+..+ ..+..+.-+|....+++.|.-.....+.+|+..
T Consensus       105 ~~~I~gl~~~-dg~-Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  105 TKSIKGLKLA-DGT-LITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             cccccchhhc-CCE-EEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            3445444433 454 55667889999998873221   11122222 456777788877888887643322345555555


Q ss_pred             CCCeeEEEecC-------Ccc--EEEEEEeeC-CCeEEEEecCCCeEEEEeCCCCc-eeeeccCcccceEEEEEcCCCCE
Q 007283          134 SGTNVGEFDGH-------SRR--VLSCAFKPS-RPFRIATCGEDFLVNFYEGPPFK-FKLSHRGHSNFVNCVRFSPDGSK  202 (609)
Q Consensus       134 ~~~~~~~~~~h-------~~~--v~~~~~~p~-~~~~i~t~~~d~~i~~~~~~~~~-~~~~~~~h~~~v~~l~~s~dg~~  202 (609)
                      ..+++.+-+.-       .-+  ++++.|-|. .++.||+|..-+.+++||....+ .+..+.--..+++++...|+|++
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~  261 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF  261 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence            44433332211       112  456788665 24579999999999999977543 33344444678999999999999


Q ss_pred             EEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          203 FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       203 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      +.+|..-+.+..+|.+.++.+...  ..+.++.|.++..+|.+++++++|-|+.+||+|+..
T Consensus       262 Iy~gn~~g~l~~FD~r~~kl~g~~--~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  262 IYTGNTKGQLAKFDLRGGKLLGCG--LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             EEEecccchhheecccCceeeccc--cCCccCCcceEEEcCCCceEEeeccceeEEEeeccc
Confidence            999999999999999999887663  247889999999999999999999999999999863

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.18  E-value=1.1e-06  Score=83.78  Aligned_cols=117  Identities=25%  Similarity=0.370  Sum_probs=93.2

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCC-cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283          447 RFPVTASAIAPDGSEAIIGSQDG-KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV  525 (609)
Q Consensus       447 ~~~~~~~~~sp~g~~l~~gs~dg-~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~  525 (609)
                      +..|.-..+..+++-++.|..|| .|-|++..++..   +...+.-+.|.++..+|||++++.+....++.+.|+.++..
T Consensus       359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~---kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv  435 (668)
T COG4946         359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV---KRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV  435 (668)
T ss_pred             CCceEEEEEccCCcceEEeccCCceEEEEecCCceE---EEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe
Confidence            34466666777778899999999 899999887653   34556678899999999999999999999999999988765


Q ss_pred             EEeeecCCCCceEEEEECCCCcEEEEEeCCC----eEEEEEcCCCC
Q 007283          526 KLKNMLYHTARINCLAWSPNNSMVATGSLDT----CVIIYEIDKPA  567 (609)
Q Consensus       526 ~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~----~v~vw~~~~~~  567 (609)
                      .+.. ...-+-|+..+|||+++++|-+--+|    .|+++|+...+
T Consensus       436 ~~id-kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K  480 (668)
T COG4946         436 RLID-KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK  480 (668)
T ss_pred             eEec-ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence            4321 22445699999999999999877665    68999987643

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.17  E-value=7.9e-09  Score=95.71  Aligned_cols=255  Identities=15%  Similarity=0.202  Sum_probs=160.7

Q ss_pred             ccceEEEEECCCCC--eEEEEeCCCcEEEeecccCCCCceE---EEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEE
Q 007283          233 KGSVYAVSWSPDGK--QVLTASADKSAKVWDISEDNHGKLK---KTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISI  307 (609)
Q Consensus       233 ~~~V~~l~~spd~~--~l~s~s~d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~  307 (609)
                      ...|.+++|-.|++  .|...+.|..+..+...+.......   .+.. .+.+    .+....-.+..++++..+|.+.+
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~-l~~~----~I~gl~~~dg~Litc~~sG~l~~  129 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVS-LGTK----SIKGLKLADGTLITCVSSGNLQV  129 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccc-cccc----cccchhhcCCEEEEEecCCcEEE
Confidence            34577777776554  4555556767776665432111000   0000 0111    11111123557777888899999


Q ss_pred             EeCCCCC---CCceeeeCCCCCeEEEEEecCCCCEEEEEecC--CcEEEEecCccccceeccccccceeEeeeeCCcEEE
Q 007283          308 FSANDLE---KSPLQLSGHMKNVTALTVLNIDPKVILSSSYD--GLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVT  382 (609)
Q Consensus       308 ~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~d--g~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (609)
                      |......   .....+..+ ..+..+.-.+..+.++++|+..  ..+.+|++....                        
T Consensus       130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~------------------------  184 (412)
T KOG3881|consen  130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSK------------------------  184 (412)
T ss_pred             EeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccce------------------------
Confidence            9865332   122223222 2333444445566788889988  788888764320                        


Q ss_pred             EeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC--CC
Q 007283          383 SGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD--GS  460 (609)
Q Consensus       383 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~  460 (609)
                           .||.-  ....                      ++.+                  -+...-.++.+.|-|.  ..
T Consensus       185 -----qiw~a--KNvp----------------------nD~L------------------~LrVPvW~tdi~Fl~g~~~~  217 (412)
T KOG3881|consen  185 -----QIWSA--KNVP----------------------NDRL------------------GLRVPVWITDIRFLEGSPNY  217 (412)
T ss_pred             -----eeeec--cCCC----------------------Cccc------------------cceeeeeeccceecCCCCCc
Confidence                 11110  0000                      0000                  0000112455566666  78


Q ss_pred             EEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEE
Q 007283          461 EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL  540 (609)
Q Consensus       461 ~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l  540 (609)
                      .||+++.-+.+|+||.+.+. .+...+.--+.+|+++..-|++.++.+|..-+.+..+|..++......+.+-.+.|+++
T Consensus       218 ~fat~T~~hqvR~YDt~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsi  296 (412)
T KOG3881|consen  218 KFATITRYHQVRLYDTRHQR-RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSI  296 (412)
T ss_pred             eEEEEecceeEEEecCcccC-cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceE
Confidence            89999999999999987443 23344444567999999999999999999999999999887765444467788999999


Q ss_pred             EECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          541 AWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       541 ~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      --+|..++||+++.|..|+|+|+.+
T Consensus       297 h~hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  297 HCHPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             EEcCCCceEEeeccceeEEEeeccc
Confidence            9999999999999999999999976

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.11  E-value=3.2e-07  Score=88.20  Aligned_cols=236  Identities=15%  Similarity=0.167  Sum_probs=143.1

Q ss_pred             CcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---------------C
Q 007283           15 ERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---------------G   79 (609)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---------------~   79 (609)
                      ++........+|.|.+|++-....|.+|.......+..+. |. .|.-+.|||+|+||.+=+..               .
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~-~~-~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n  108 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFR-HP-DVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKN  108 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhheeeee-cC-CceecccCcccceeeeeccCCccChhhccCCccccC
Confidence            4555668999999999998877889999987666544443 43 59999999999999984332               2


Q ss_pred             cEEEEcCCCCceeeEEEeecccc--ee-EEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecC---CccEEEEEE
Q 007283           80 TVRIWGAHNDHVLKKEFRVLSGR--ID-DLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGH---SRRVLSCAF  153 (609)
Q Consensus        80 ~i~vWd~~~~~~~~~~~~~~~~~--v~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~  153 (609)
                      .+.+||..++.++ ..+...+.+  .. -+.||-|.++++=+. +..   +.+...  ..++.....+   ...|...+|
T Consensus       109 ~~~vwd~~sg~iv-~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~s---l~i~e~--t~n~~~~p~~~lr~~gi~dFsi  181 (561)
T COG5354         109 NVFVWDIASGMIV-FSFNGISQPYLGWPVLKFSIDDKYVARVV-GSS---LYIHEI--TDNIEEHPFKNLRPVGILDFSI  181 (561)
T ss_pred             ceeEEeccCceeE-eeccccCCcccccceeeeeecchhhhhhc-cCe---EEEEec--CCccccCchhhccccceeeEEe
Confidence            5999999987643 344444444  44 688999877665432 111   223322  1111111111   245777788


Q ss_pred             eeCCC-eEEEE-----ecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe-----------CCCcEEEEe
Q 007283          154 KPSRP-FRIAT-----CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS-----------SDKKGIIYD  216 (609)
Q Consensus       154 ~p~~~-~~i~t-----~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-----------~d~~i~iwd  216 (609)
                      +|.+. ..||.     .+.+.++++|.++..+......--...=..+.|.+.|.+|+.-.           ...++.|++
T Consensus       182 sP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~  261 (561)
T COG5354         182 SPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLR  261 (561)
T ss_pred             cCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEe
Confidence            88632 22332     46777888888774443322111111123577888888665421           124566676


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCCeEEEEe--CCCcEEEeecc
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS--ADKSAKVWDIS  263 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s--~d~~i~iwd~~  263 (609)
                      .+... +   .....-.+.|...+|.|.++.++.++  ++..+.++|++
T Consensus       262 ~~e~~-i---~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr  306 (561)
T COG5354         262 ITERS-I---PVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLR  306 (561)
T ss_pred             ecccc-c---ceeccccccceeeeecccCCceeEEecccccceeecccc
Confidence            65322 1   11114467899999999888777665  45555666654

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.10  E-value=2.2e-08  Score=91.22  Aligned_cols=248  Identities=16%  Similarity=0.302  Sum_probs=154.7

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce----eeEEEeec------------ccceeEEEECCCCC--EEEEE
Q 007283           57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV----LKKEFRVL------------SGRIDDLQWSPDGL--RIVAC  118 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~----~~~~~~~~------------~~~v~~~~~spdg~--~l~~~  118 (609)
                      .+.|+++.|...|.+||+|+.+|.|-++.-....-    ....++.|            .+.|..++|-+++.  .++..
T Consensus        25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls  104 (433)
T KOG1354|consen   25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS  104 (433)
T ss_pred             hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence            56799999999999999999999999996543211    22233333            34678899999864  34444


Q ss_pred             ECCCCcceEEEEEcCC---CC--------------------------------eeEEE-ecCCccEEEEEEeeCCCeEEE
Q 007283          119 GDGKGKSLVRAFMWDS---GT--------------------------------NVGEF-DGHSRRVLSCAFKPSRPFRIA  162 (609)
Q Consensus       119 ~~~~~~~~~~~~~~~~---~~--------------------------------~~~~~-~~h~~~v~~~~~~p~~~~~i~  162 (609)
                      +.+++   +++|....   ..                                +...+ +.|+..|.++++..|... +.
T Consensus       105 tNdkt---iKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et-~l  180 (433)
T KOG1354|consen  105 TNDKT---IKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET-FL  180 (433)
T ss_pred             cCCcc---eeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce-Ee
Confidence            44443   34443321   11                                00111 368888999999988875 44


Q ss_pred             EecCCCeEEEEeCCCCceeee---ccCc-----ccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcc------ccccC
Q 007283          163 TCGEDFLVNFYEGPPFKFKLS---HRGH-----SNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADK------IGELS  227 (609)
Q Consensus       163 t~~~d~~i~~~~~~~~~~~~~---~~~h-----~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~------~~~~~  227 (609)
                      + ..|-.|.+|..+-....+.   .+.+     ...|++..|+|. .+.++-.+..|+|++.|.+....      +....
T Consensus       181 S-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep  259 (433)
T KOG1354|consen  181 S-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP  259 (433)
T ss_pred             e-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence            3 4566789997542211111   2222     346889999997 55788889999999999873221      11110


Q ss_pred             cC-------CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCC-----------CCCccceEEEE
Q 007283          228 PE-------DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG-----------SGGVDDMLVGC  289 (609)
Q Consensus       228 ~~-------~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~  289 (609)
                      ..       .+--..|..+.|+++|+|+++-. --+|++||+.-.  .+.+.+.....           +..+ .-.+.|
T Consensus       260 edp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme--~~pv~t~~vh~~lr~kLc~lYEnD~I-fdKFec  335 (433)
T KOG1354|consen  260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNME--AKPVETYPVHEYLRSKLCSLYENDAI-FDKFEC  335 (433)
T ss_pred             cCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEecccc--CCcceEEeehHhHHHHHHHHhhccch-hheeEE
Confidence            00       01124688899999999999864 368999998421  22233322111           0001 113457


Q ss_pred             EEcCC--eEEEEEcCCcEEEEeCCCC
Q 007283          290 LWQND--FLVIVSLGGTISIFSANDL  313 (609)
Q Consensus       290 ~~~~~--~~~~~~~~g~i~~~~~~~~  313 (609)
                      .|+++  ..++|+-.+..++++....
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             EEcCCcceEecccccceEEEecCCCC
Confidence            77766  8888898999999985443

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.08  E-value=1.1e-08  Score=99.97  Aligned_cols=190  Identities=23%  Similarity=0.379  Sum_probs=138.0

Q ss_pred             CCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee---cccceeEEEEC------C-------------CCCEEEEEECCCC
Q 007283           66 SPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV---LSGRIDDLQWS------P-------------DGLRIVACGDGKG  123 (609)
Q Consensus        66 sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~---~~~~v~~~~~s------p-------------dg~~l~~~~~~~~  123 (609)
                      .|-+.|+|....||.+|||+...++. ..+|..   .++...+..|.      |             .+..+++.|-+.+
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~-~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g   80 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQL-QQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQG   80 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCcee-eeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCc
Confidence            45678999999999999999987652 233321   23334444443      1             1223333343333


Q ss_pred             cceEEEEEcCCCCeeEEE--ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCC
Q 007283          124 KSLVRAFMWDSGTNVGEF--DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS  201 (609)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~  201 (609)
                      .  +.++....+..-..+  .+|.+.|.++..+.+-. .|.+++.|+.+.+|+.......+...+....+.+++.+|||.
T Consensus        81 ~--v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~-ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~  157 (541)
T KOG4547|consen   81 S--VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLG-CIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK  157 (541)
T ss_pred             c--EEEEEecCCeEEEEEecCCCCCcceeeecccccC-ceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence            2  233333344443444  37888999888776554 599999999999999998888888988888999999999999


Q ss_pred             EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-----CCeEEEE-eCCCcEEEeeccc
Q 007283          202 KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-----GKQVLTA-SADKSAKVWDISE  264 (609)
Q Consensus       202 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-----~~~l~s~-s~d~~i~iwd~~~  264 (609)
                      .|++|+  +.|.+||.++++.+..+   .||.+.|.++.|..+     |.+++++ ..+.-+.+|-+..
T Consensus       158 ~l~~as--~~ik~~~~~~kevv~~f---tgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  158 ILLTAS--RQIKVLDIETKEVVITF---TGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             EEEecc--ceEEEEEccCceEEEEe---cCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            998876  67999999999998887   499999999999877     6665554 5567788897754

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=8.9e-08  Score=96.43  Aligned_cols=203  Identities=10%  Similarity=0.036  Sum_probs=122.1

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCE-EEEEeCC---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW-IASADVS---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL  113 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~-las~~~d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~  113 (609)
                      .+.+-|...........+ . .....+|||||+. ++..+.+   ..|.++|+.+++.  +.+....+......|||||+
T Consensus       170 ~l~~~d~dg~~~~~~~~~-~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYTLTYQKVIVKG-G-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCCCCceeEEccC-C-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCCC
Confidence            666655543333222332 3 6788999999985 6644433   4577778777653  23444556677789999999


Q ss_pred             EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC--eEEEEeCCCCceeeec-cCcccc
Q 007283          114 RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF--LVNFYEGPPFKFKLSH-RGHSNF  190 (609)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~--~i~~~~~~~~~~~~~~-~~h~~~  190 (609)
                      +|+...+..+...+.+++.+.+. ...+..+........|+|||..++.+....+  .|...+...++..+.. .+..  
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~--  322 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN--  322 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc--
Confidence            88876654433333333433443 3334434333345689999987655554444  4555576666553332 2221  


Q ss_pred             eEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283          191 VNCVRFSPDGSKFISVSSD---------KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD  254 (609)
Q Consensus       191 v~~l~~s~dg~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d  254 (609)
                        ...|+|||+.|+..+..         ..+.+.|..+++. ..+..  +  +......|+|||++++..+.+
T Consensus       323 --~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~--~--~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        323 --NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTA--N--GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             --CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCC--C--CCcCCeEECCCCCEEEEEEcc
Confidence              23899999988877653         2577778776653 33332  1  223468999999987766543

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=3.2e-07  Score=89.00  Aligned_cols=310  Identities=18%  Similarity=0.282  Sum_probs=165.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC-----------CcEEEe
Q 007283          192 NCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-----------KSAKVW  260 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-----------~~i~iw  260 (609)
                      +-+.|||.|.+|+|--.- -|.+|-......+..+    .|.+ |.-+.|||..+||+|=|..           ..++||
T Consensus       214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF----~Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IW  287 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRF----YHPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIW  287 (698)
T ss_pred             eeEEecCCceEEEEEecc-ceeeecCccHHHHHhc----cCCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEE
Confidence            568999999999887554 4889987777777776    3664 8999999999999987642           578999


Q ss_pred             ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeC---CCCCeEEEEEecCCC
Q 007283          261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSG---HMKNVTALTVLNIDP  337 (609)
Q Consensus       261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~  337 (609)
                      |+.   +|.+++.+.........-.++...+++++++.... +.|.+|......    .+.+   ....|....|++.  
T Consensus       288 DI~---tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~----lld~Kslki~gIr~FswsP~--  357 (698)
T KOG2314|consen  288 DIA---TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFM----LLDKKSLKISGIRDFSWSPT--  357 (698)
T ss_pred             Ecc---ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCcee----eecccccCCccccCcccCCC--
Confidence            998   45555555432211111122222333455555443 678888654311    1111   1223444444432  


Q ss_pred             CEEEEEecCCcEEEEecCccccceeccccccceeEeeee-CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEe
Q 007283          338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI-EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSV  416 (609)
Q Consensus       338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (609)
                              +..+..|-......-       ..+..+... .+.+.+..      ++                 ...++.+
T Consensus       358 --------~~llAYwtpe~~~~p-------arvtL~evPs~~~iRt~n------lf-----------------nVsDckL  399 (698)
T KOG2314|consen  358 --------SNLLAYWTPETNNIP-------ARVTLMEVPSKREIRTKN------LF-----------------NVSDCKL  399 (698)
T ss_pred             --------cceEEEEcccccCCc-------ceEEEEecCccceeeecc------ce-----------------eeeccEE
Confidence                    334556643321100       011111111 11111100      00                 0001111


Q ss_pred             ecc-CCcEEEEEe-----------cccEEEee---CCeeeEEeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEEecC
Q 007283          417 ALH-YPELVLVST-----------DSGVVLLR---GAEVVSTINLRFPVTASAIAPDGSEAIIGSQD---GKLRVYSIRG  478 (609)
Q Consensus       417 ~~~-~~~~~~~~~-----------~~~~~~~~---~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~d---g~i~iw~~~~  478 (609)
                      ... .++.++.-.           ..+..+.+   ..-.+..+.++.++-+.++-|.|..+++-+..   .++.+|.+..
T Consensus       400 hWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~  479 (698)
T KOG2314|consen  400 HWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVET  479 (698)
T ss_pred             EeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeec
Confidence            100 011111111           11111211   11223445566778889999999887665433   5789998864


Q ss_pred             CeeeeeEEEecCCCceEEEEECCCCCEEEEEe---CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC
Q 007283          479 DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD---VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD  555 (609)
Q Consensus       479 ~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s---~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D  555 (609)
                      .......+..--....+.|.|||.|++++.+.   ..+.+.++|......+......| ...+.+.|.|.|+|++|++.-
T Consensus       480 ~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtGRYvvT~ss~  558 (698)
T KOG2314|consen  480 NIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEVEWDPTGRYVVTSSSS  558 (698)
T ss_pred             CCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccceECCCCCEEEEeeeh
Confidence            22111111111124568899999999998764   56888999865322211111112 346789999999999998754


Q ss_pred             C
Q 007283          556 T  556 (609)
Q Consensus       556 ~  556 (609)
                      .
T Consensus       559 w  559 (698)
T KOG2314|consen  559 W  559 (698)
T ss_pred             h
Confidence            3

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.04  E-value=7.1e-07  Score=86.98  Aligned_cols=309  Identities=15%  Similarity=0.161  Sum_probs=177.2

Q ss_pred             eEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEE-----EeCC-----CcEEEEcCCCC
Q 007283           20 ILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIAS-----ADVS-----GTVRIWGAHND   89 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las-----~~~d-----~~i~vWd~~~~   89 (609)
                      +....+++|+.++|.++..+.|++......+..... . .+..+-|||.|+||.+     ...+     ..+++|++++ 
T Consensus        38 ~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~-~-~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet-  114 (566)
T KOG2315|consen   38 NVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVEL-K-KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVET-  114 (566)
T ss_pred             eeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEecc-c-eeeeeeecccccccccccccccccCCCCCCCceeeeeecc-
Confidence            466788889999999999999999988754332322 2 7999999999999986     2223     3478999998 


Q ss_pred             ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCC-CeEEEE-----
Q 007283           90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSR-PFRIAT-----  163 (609)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~i~t-----  163 (609)
                      .+....+..-...-..++|++|....+-...+    -+.+++..... ...-+-|...|..+.++|.. +..+|+     
T Consensus       115 ~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~n----ev~f~~~~~f~-~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~  189 (566)
T KOG2315|consen  115 GVQRSQIQKKMQNGWVPQFSIDESLAARLVSN----EVQFYDLGSFK-TIQHKLSVSGITMLSLSPGPEPPFVAVYVPEK  189 (566)
T ss_pred             ceehhheehhhhcCcccccccchhhhhhhhcc----eEEEEecCCcc-ceeeeeeccceeeEEecCCCCCceEEEEccCC
Confidence            43333333322333588999986432211111    13344433311 11223456788999999983 333443     


Q ss_pred             ecCCCeEEEEeCCCCce-----eeeccCcccceEEEEEcCCCC-EEEEEeC--CC---------cEEEEeCCCCcccccc
Q 007283          164 CGEDFLVNFYEGPPFKF-----KLSHRGHSNFVNCVRFSPDGS-KFISVSS--DK---------KGIIYDGKTADKIGEL  226 (609)
Q Consensus       164 ~~~d~~i~~~~~~~~~~-----~~~~~~h~~~v~~l~~s~dg~-~l~s~~~--d~---------~i~iwd~~~~~~~~~~  226 (609)
                      +|.-..+++|..+....     .+.|. ..+. -.+.|++-|. +|+.++.  |+         ++.+.+.+..++...+
T Consensus       190 kGaPa~vri~~~~~~~~~~~~a~ksFF-kadk-vqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L  267 (566)
T KOG2315|consen  190 KGAPASVRIYKYPEEGQHQPVANKSFF-KADK-VQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL  267 (566)
T ss_pred             CCCCcEEEEeccccccccchhhhcccc-ccce-eEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec
Confidence            35556788887542111     11111 1112 2467887776 3333332  33         4555555533333333


Q ss_pred             CcCCCCccceEEEEECCCCCeEEEEe--CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcC--
Q 007283          227 SPEDGHKGSVYAVSWSPDGKQVLTAS--ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG--  302 (609)
Q Consensus       227 ~~~~~h~~~V~~l~~spd~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  302 (609)
                          .-.++|.++.|+|+++-++.+-  +-..+.|+|++    +..+-.+... .    ...+.....+.+++.++.+  
T Consensus       268 ----~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr----~~~v~df~eg-p----RN~~~fnp~g~ii~lAGFGNL  334 (566)
T KOG2315|consen  268 ----LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR----GKPVFDFPEG-P----RNTAFFNPHGNIILLAGFGNL  334 (566)
T ss_pred             ----CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC----CCEeEeCCCC-C----ccceEECCCCCEEEEeecCCC
Confidence                2368999999999998766553  34678899986    3333332211 0    0111122235577776665  


Q ss_pred             -CcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEec------CCcEEEEecC
Q 007283          303 -GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY------DGLIVKWIQG  355 (609)
Q Consensus       303 -g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~------dg~i~~W~~~  355 (609)
                       |.+.+|+.... +....+  ....-+-..|+ +++.+++|++.      |+.+++|+..
T Consensus       335 ~G~mEvwDv~n~-K~i~~~--~a~~tt~~eW~-PdGe~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  335 PGDMEVWDVPNR-KLIAKF--KAANTTVFEWS-PDGEYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             CCceEEEeccch-hhcccc--ccCCceEEEEc-CCCcEEEEEeccccEEecCCeEEEEec
Confidence             78999987542 111111  11222334554 45677777764      6788899653

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.01  E-value=8e-08  Score=96.76  Aligned_cols=183  Identities=15%  Similarity=0.175  Sum_probs=114.5

Q ss_pred             ceeEEeecCCCCe-EEEe--C--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCc--EEEEcCCCC
Q 007283           18 RGILISGHPKSNS-ILYT--N--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGT--VRIWGAHND   89 (609)
Q Consensus        18 ~~~~~~~~~~~~~-l~~~--~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~--i~vWd~~~~   89 (609)
                      ..+.-.++|||+. ++|.  .  ...++++|+.+++..... ...+.....+|||||+.|+ +.+.++.  |.++++.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIA-SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEe-cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            3456789999985 6653  2  257999999887765433 3456677889999998776 4444544  555566555


Q ss_pred             ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-EEecCCccEEEEEEeeCCCeEEEEecCC-
Q 007283           90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-EFDGHSRRVLSCAFKPSRPFRIATCGED-  167 (609)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v~~~~~~p~~~~~i~t~~~d-  167 (609)
                      +.  ..++..........|+|||++|+.+.+..+...+...+.+.+.... .+.+..    ...|+|+|..++.+.... 
T Consensus       268 ~~--~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~----~~~~SPDG~~Ia~~~~~~~  341 (419)
T PRK04043        268 TL--TQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKN----NSSVSTYKNYIVYSSRETN  341 (419)
T ss_pred             cE--EEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCc----CceECCCCCEEEEEEcCCC
Confidence            42  2344333334566899999999999876555455555555554322 222221    238999999766665443 


Q ss_pred             -------CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283          168 -------FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       168 -------~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                             ..+.+.+.+.+.......+  .......|+|||+.|+..+.+
T Consensus       342 ~~~~~~~~~I~v~d~~~g~~~~LT~~--~~~~~p~~SPDG~~I~f~~~~  388 (419)
T PRK04043        342 NEFGKNTFNLYLISTNSDYIRRLTAN--GVNQFPRFSSDGGSIMFIKYL  388 (419)
T ss_pred             cccCCCCcEEEEEECCCCCeEECCCC--CCcCCeEECCCCCEEEEEEcc
Confidence                   2456667665544322222  123357899999988776643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.01  E-value=4.1e-09  Score=105.02  Aligned_cols=288  Identities=19%  Similarity=0.242  Sum_probs=174.1

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe-ecccceeEEEECCCC---CEEEEEECCCCcceEEEEEc
Q 007283           57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR-VLSGRIDDLQWSPDG---LRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~-~~~~~v~~~~~spdg---~~l~~~~~~~~~~~~~~~~~  132 (609)
                      .+.+..+.++|.|+-||.++.-| +.+-|++..-.-.+.++ ...-.|....|||..   ..+|....-+      ...|
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qk------aiiw   96 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQK------AIIW   96 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcch------hhhh
Confidence            45688889999999999998766 44556654321112222 123357788898853   2444433222      2344


Q ss_pred             CC--C-Ce--eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce-eeeccCcccceEEEEEcCCCCEEEEE
Q 007283          133 DS--G-TN--VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF-KLSHRGHSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       133 ~~--~-~~--~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~  206 (609)
                      ..  . ..  -..+-+|+..|+.+.|+|+.+.++++|+.|..+..||...... ...+..-....+.|+|+-....++..
T Consensus        97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence            42  1 11  2345699999999999999999999999999999999765432 33333334456778888654445556


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCC----
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG----  281 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~----  281 (609)
                      +....+++||.+.+......  .++|...|+.+.|..- -..+.+.+.|++|++||.+.. ........+-...-+    
T Consensus       177 shg~~i~vwd~r~gs~pl~s--~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kS-t~e~~~~vtt~~piw~~r~  253 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGSTPLCS--LKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKS-TTESKRTVTTNFPIWRGRY  253 (1081)
T ss_pred             ccCCceEEEeccCCCcceEE--ecccceeeehHHHhhhhhhhhcccCCCCceeeeccccc-ccccceeccccCcceeccc
Confidence            77889999998876643221  2478889999988642 235788999999999998642 111111111110000    


Q ss_pred             --ccceEEEEEEc-C-CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEe---------cCCCCEEEEEecCCc
Q 007283          282 --VDDMLVGCLWQ-N-DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVL---------NIDPKVILSSSYDGL  348 (609)
Q Consensus       282 --~~~~~~~~~~~-~-~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~---------~~~~~~~~t~s~dg~  348 (609)
                        +-+.. ...+. + .++.....++....|+..+...+.+.+.||...|....|-         +...-+++|-|.|.+
T Consensus       254 ~Pfg~g~-~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~  332 (1081)
T KOG0309|consen  254 LPFGEGY-CIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQT  332 (1081)
T ss_pred             cccCcee-EeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCc
Confidence              00000 00000 1 1111112222233344445556678899999877544332         112247999999999


Q ss_pred             EEEEecC
Q 007283          349 IVKWIQG  355 (609)
Q Consensus       349 i~~W~~~  355 (609)
                      +|+|-.+
T Consensus       333 lrlWpI~  339 (1081)
T KOG0309|consen  333 LRLWPID  339 (1081)
T ss_pred             eEeeecc
Confidence            9999544

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.99  E-value=6.8e-08  Score=86.28  Aligned_cols=121  Identities=20%  Similarity=0.233  Sum_probs=91.4

Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC-CCceeee-ccCcccceEEEEEcCC-CCEEEEEeCCCcEEEE
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PFKFKLS-HRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIY  215 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~-~~~~~~~-~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iw  215 (609)
                      +.++.|.-+.+.+.|+...+.++.+||.|+.+..||.+ |.+++.. .+-|...|.++.-+|. +..|+||+.|-.|++|
T Consensus       159 q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~  238 (339)
T KOG0280|consen  159 QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVL  238 (339)
T ss_pred             ccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeee
Confidence            35788999999999998888889999999999999988 5555444 4568888999988865 6699999999999999


Q ss_pred             eCCC-CccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecc
Q 007283          216 DGKT-ADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDIS  263 (609)
Q Consensus       216 d~~~-~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~  263 (609)
                      |.+. ++.+..-    .-.+.|..+..+|.-. .++.++.-+-.++-+.+
T Consensus       239 DtRnm~kPl~~~----~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~  284 (339)
T KOG0280|consen  239 DTRNMGKPLFKA----KVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSS  284 (339)
T ss_pred             ehhcccCccccC----ccccceEEEEecchhhhHHHHHHHhcCceEEEec
Confidence            9873 4444332    2347899999999543 33344444456666654

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.99  E-value=9.9e-06  Score=75.29  Aligned_cols=274  Identities=16%  Similarity=0.199  Sum_probs=157.8

Q ss_pred             CCEEEEEeCCCCc-c--ccccccCCCCcEEEEECCCCCEEEEEeC---CCcEEEEcCCC--Cceee-EEEeecccceeEE
Q 007283           36 GRSVIILDLSNPL-Q--VSIYGEHAYPATVARFSPNGEWIASADV---SGTVRIWGAHN--DHVLK-KEFRVLSGRIDDL  106 (609)
Q Consensus        36 ~~~~~i~~~~~~~-~--~~~~~~h~~~v~~~~~sp~g~~las~~~---d~~i~vWd~~~--~~~~~-~~~~~~~~~v~~~  106 (609)
                      +..|++|++.+.. .  ...+-.+.++.+-++|+|+++.|.++..   +|.|--+.++.  ++... .+......+-.-+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            5678888886322 1  1223456788999999999999987654   47787777764  33211 1112222344889


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCC-CCe--eEEEecCCcc----------EEEEEEeeCCCeEEEEe-cCCCeEEE
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDS-GTN--VGEFDGHSRR----------VLSCAFKPSRPFRIATC-GEDFLVNF  172 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~h~~~----------v~~~~~~p~~~~~i~t~-~~d~~i~~  172 (609)
                      +++++|++|+++.-..+  .+.++-... +..  .-....|.+.          +-...|.|++.++++.. |.|+ +.+
T Consensus        95 svd~~g~~vf~AnY~~g--~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~  171 (346)
T COG2706          95 SVDEDGRFVFVANYHSG--SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFL  171 (346)
T ss_pred             EECCCCCEEEEEEccCc--eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEE
Confidence            99999999998764432  234444432 211  1122334433          77788999998755554 5664 677


Q ss_pred             EeCCCCceeeec---cCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCC--c--cc---cccCcCCCCccceEEEEE
Q 007283          173 YEGPPFKFKLSH---RGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTA--D--KI---GELSPEDGHKGSVYAVSW  241 (609)
Q Consensus       173 ~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~--~--~~---~~~~~~~~h~~~V~~l~~  241 (609)
                      |+...+++....   ......-..|.|+|++++..... -+++|.+|.....  +  .+   ..+.....-....-.+..
T Consensus       172 y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhi  251 (346)
T COG2706         172 YDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHI  251 (346)
T ss_pred             EEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEE
Confidence            776555443221   12234457899999999765555 4899999976653  2  11   112111111245678889


Q ss_pred             CCCCCeEEEEeC-CCcEEEeecccCCCCceEE-EeccCCCCCccceEEEEEEcCCeEEEEEc-CCcEEEEeCCCCCC
Q 007283          242 SPDGKQVLTASA-DKSAKVWDISEDNHGKLKK-TLTPSGSGGVDDMLVGCLWQNDFLVIVSL-GGTISIFSANDLEK  315 (609)
Q Consensus       242 spd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~i~~~~~~~~~~  315 (609)
                      +|||++|..+-. ...|.+|.+... .+++.- ...+.+  +..-.-+.+...+++|+++.. +.++.+|..+....
T Consensus       252 s~dGrFLYasNRg~dsI~~f~V~~~-~g~L~~~~~~~te--g~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG  325 (346)
T COG2706         252 SPDGRFLYASNRGHDSIAVFSVDPD-GGKLELVGITPTE--GQFPRDFNINPSGRFLIAANQKSDNITVFERDKETG  325 (346)
T ss_pred             CCCCCEEEEecCCCCeEEEEEEcCC-CCEEEEEEEeccC--CcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCc
Confidence            999999887743 236777777543 222211 111111  000011222234566666554 45788887765443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.98  E-value=6e-07  Score=83.34  Aligned_cols=237  Identities=16%  Similarity=0.218  Sum_probs=139.8

Q ss_pred             CccCcCceeEEeecCCC-CeEEEe--CCCEEEEEeCCCCccccccccCCC--CcEEEEECCCCCEEEEEeCC-----CcE
Q 007283           12 PSTERGRGILISGHPKS-NSILYT--NGRSVIILDLSNPLQVSIYGEHAY--PATVARFSPNGEWIASADVS-----GTV   81 (609)
Q Consensus        12 ~~~~~~~~~~~~~~~~~-~~l~~~--~~~~~~i~~~~~~~~~~~~~~h~~--~v~~~~~sp~g~~las~~~d-----~~i   81 (609)
                      |-+.||=  .+..+|.. ..++..  -|.-..++|..++.....+....+  .-=.-.|||||++|.+...|     |.|
T Consensus         2 ~lP~RgH--~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~I   79 (305)
T PF07433_consen    2 PLPARGH--GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVI   79 (305)
T ss_pred             CCCcccc--ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEE
Confidence            4455554  67788844 444444  267888999988877654332111  11234799999999986554     789


Q ss_pred             EEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECC--------C-------CcceEEEEEcCCCCeeEE--E--e
Q 007283           82 RIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDG--------K-------GKSLVRAFMWDSGTNVGE--F--D  142 (609)
Q Consensus        82 ~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~--------~-------~~~~~~~~~~~~~~~~~~--~--~  142 (609)
                      -|||...+-....++..+--.--.+.+.|||+.|+....|        +       ...-+.+.+-.+++.+..  +  .
T Consensus        80 gVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~  159 (305)
T PF07433_consen   80 GVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD  159 (305)
T ss_pred             EEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc
Confidence            9999984333334566554455678899999877765422        0       001122222334554443  3  3


Q ss_pred             cCCccEEEEEEeeCCCeEEEEecCCC-------eEEEEeCCC-Cceee----eccCcccceEEEEEcCCCCEEEEEe-CC
Q 007283          143 GHSRRVLSCAFKPSRPFRIATCGEDF-------LVNFYEGPP-FKFKL----SHRGHSNFVNCVRFSPDGSKFISVS-SD  209 (609)
Q Consensus       143 ~h~~~v~~~~~~p~~~~~i~t~~~d~-------~i~~~~~~~-~~~~~----~~~~h~~~v~~l~~s~dg~~l~s~~-~d  209 (609)
                      .|...|..+++.+++.. +..+-..+       .+-++.... .....    ....-.+++-+|+++++|..++..+ ..
T Consensus       160 ~~~lSiRHLa~~~~G~V-~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrG  238 (305)
T PF07433_consen  160 LHQLSIRHLAVDGDGTV-AFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRG  238 (305)
T ss_pred             ccccceeeEEecCCCcE-EEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCC
Confidence            46778999999998853 22221111       122222111 00000    0122346899999999999776655 46


Q ss_pred             CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283          210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK  258 (609)
Q Consensus       210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~  258 (609)
                      +.+.+||..+++.+....     -..+..++-.+++ +++|.+ .|.+.
T Consensus       239 g~~~~~d~~tg~~~~~~~-----l~D~cGva~~~~~-f~~ssG-~G~~~  280 (305)
T PF07433_consen  239 GRVAVWDAATGRLLGSVP-----LPDACGVAPTDDG-FLVSSG-QGQLI  280 (305)
T ss_pred             CEEEEEECCCCCEeeccc-----cCceeeeeecCCc-eEEeCC-CccEE
Confidence            789999999998776543     2236677777766 555554 45433

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.93  E-value=6.6e-08  Score=94.63  Aligned_cols=147  Identities=19%  Similarity=0.280  Sum_probs=120.4

Q ss_pred             cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC
Q 007283          456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA  535 (609)
Q Consensus       456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~  535 (609)
                      +-|...+|.|...|.|.+|++..+.+.....-.+|.+.|+++.++.+-..+-|++.|..+-.|+....... ..+..-..
T Consensus        67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~-~~~~~~~~  145 (541)
T KOG4547|consen   67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII-RIWKEQKP  145 (541)
T ss_pred             cCCceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee-eeeccCCC
Confidence            34556789999999999999999888766666799999999999999999999999999999997665443 33555677


Q ss_pred             ceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-C-----CCe-EEEEeCCCcEEEEEcc
Q 007283          536 RINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-D-----EHS-VVSSGEDACVRVWRLT  607 (609)
Q Consensus       536 ~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~-----~~~-l~s~s~D~~i~~W~~~  607 (609)
                      .+.+++++||+++|++|+  ++|++|++.+.  +......||.+.|.+++|. .     +.+ |.+...+.-+.+|-+.
T Consensus       146 ~~~sl~is~D~~~l~~as--~~ik~~~~~~k--evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~  220 (541)
T KOG4547|consen  146 LVSSLCISPDGKILLTAS--RQIKVLDIETK--EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVE  220 (541)
T ss_pred             ccceEEEcCCCCEEEecc--ceEEEEEccCc--eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEE
Confidence            789999999999999886  57999999864  4456668899999999997 4     344 4457778899999764

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.90  E-value=3.4e-06  Score=81.45  Aligned_cols=244  Identities=13%  Similarity=0.117  Sum_probs=141.4

Q ss_pred             ccCcCceeEEeecCCCCeEEEeCC-----------CEEEEEeCCCCcccccccc----C---CCCcEEEEECCCCCEEEE
Q 007283           13 STERGRGILISGHPKSNSILYTNG-----------RSVIILDLSNPLQVSIYGE----H---AYPATVARFSPNGEWIAS   74 (609)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~l~~~~~-----------~~~~i~~~~~~~~~~~~~~----h---~~~v~~~~~sp~g~~las   74 (609)
                      ...+++  .+ ++|||+.|+.++.           ..|.+||..+.+....+.-    +   ...-...++||||++|..
T Consensus        45 ~G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V  121 (352)
T TIGR02658        45 GGFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLF  121 (352)
T ss_pred             ccCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEE
Confidence            344555  34 9999988765544           7899999999887655432    1   112347899999999987


Q ss_pred             EeC--CCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe----eEEEecCCccE
Q 007283           75 ADV--SGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN----VGEFDGHSRRV  148 (609)
Q Consensus        75 ~~~--d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~h~~~v  148 (609)
                      ...  +..|-|.|+.+++.+.. ... .+...-+..++++ .++.|.|+..   ..+..=+.++.    ...|.+...++
T Consensus       122 ~n~~p~~~V~VvD~~~~kvv~e-i~v-p~~~~vy~t~e~~-~~~~~~Dg~~---~~v~~d~~g~~~~~~~~vf~~~~~~v  195 (352)
T TIGR02658       122 YQFSPSPAVGVVDLEGKAFVRM-MDV-PDCYHIFPTANDT-FFMHCRDGSL---AKVGYGTKGNPKIKPTEVFHPEDEYL  195 (352)
T ss_pred             ecCCCCCEEEEEECCCCcEEEE-EeC-CCCcEEEEecCCc-cEEEeecCce---EEEEecCCCceEEeeeeeecCCcccc
Confidence            663  68899999999875542 222 1111222222222 2233444331   11111111110    01111111111


Q ss_pred             EEE-EEee-CCCeEEEEecCCCeEEEEeCC-----CCceeee--cc----C-cccceEEEEEcCCCCEEEEEe-------
Q 007283          149 LSC-AFKP-SRPFRIATCGEDFLVNFYEGP-----PFKFKLS--HR----G-HSNFVNCVRFSPDGSKFISVS-------  207 (609)
Q Consensus       149 ~~~-~~~p-~~~~~i~t~~~d~~i~~~~~~-----~~~~~~~--~~----~-h~~~v~~l~~s~dg~~l~s~~-------  207 (609)
                      ..= .|.+ ++...+++..  +.+.+-|..     ..+....  +.    + ....+.-++++|+|+.+..+.       
T Consensus       196 ~~rP~~~~~dg~~~~vs~e--G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t  273 (352)
T TIGR02658       196 INHPAYSNKSGRLVWPTYT--GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT  273 (352)
T ss_pred             ccCCceEcCCCcEEEEecC--CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc
Confidence            110 3455 6665455444  777777732     1111111  11    1 223344599999999777643       


Q ss_pred             ---CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEe-CCCcEEEeecccCCCCceEEEe
Q 007283          208 ---SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTAS-ADKSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       208 ---~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s-~d~~i~iwd~~~~~~~~~~~~~  274 (609)
                         ..+.+.++|..+++.+..+..  +  ..+..++|+||++ +|++.. .++.|.+.|..   .++.++.+
T Consensus       274 hk~~~~~V~ViD~~t~kvi~~i~v--G--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~---t~k~i~~i  338 (352)
T TIGR02658       274 HKTASRFLFVVDAKTGKRLRKIEL--G--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAE---TGKELSSV  338 (352)
T ss_pred             ccCCCCEEEEEECCCCeEEEEEeC--C--CceeeEEECCCCCeEEEEeCCCCCcEEEEECc---CCeEEeee
Confidence               225799999999998887742  3  4689999999999 777665 57889999986   45555555

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.88  E-value=8.9e-06  Score=77.76  Aligned_cols=217  Identities=13%  Similarity=0.177  Sum_probs=140.7

Q ss_pred             ecCCCCeEEEeCCCEEEEEeCCCCcccccccc------CCCC--c---EEEE-ECC-CCCEEEEEeCCCcEEEEcCCCCc
Q 007283           24 GHPKSNSILYTNGRSVIILDLSNPLQVSIYGE------HAYP--A---TVAR-FSP-NGEWIASADVSGTVRIWGAHNDH   90 (609)
Q Consensus        24 ~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~------h~~~--v---~~~~-~sp-~g~~las~~~d~~i~vWd~~~~~   90 (609)
                      ++.||..|++-+++.|++||-.+.+....--+      -+.+  +   .-+. |++ +|.++|..|..+ .-|-+.-.+-
T Consensus       274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRGk-aFi~~~~~~~  352 (668)
T COG4946         274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRGK-AFIMRPWDGY  352 (668)
T ss_pred             cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecCc-EEEECCCCCe
Confidence            46688999999999999999877654321101      1111  1   1121 454 799999988654 3333322222


Q ss_pred             eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283           91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV  170 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i  170 (609)
                      .++   -.+.+.|.-..+.-|++-++ +|...++ .+-+++.+.+ ....+.+.-+.|.++..+|+|.+ ++.+.....+
T Consensus       353 ~iq---v~~~~~VrY~r~~~~~e~~v-igt~dgD-~l~iyd~~~~-e~kr~e~~lg~I~av~vs~dGK~-~vvaNdr~el  425 (668)
T COG4946         353 SIQ---VGKKGGVRYRRIQVDPEGDV-IGTNDGD-KLGIYDKDGG-EVKRIEKDLGNIEAVKVSPDGKK-VVVANDRFEL  425 (668)
T ss_pred             eEE---cCCCCceEEEEEccCCcceE-EeccCCc-eEEEEecCCc-eEEEeeCCccceEEEEEcCCCcE-EEEEcCceEE
Confidence            221   13556688888888877433 3433333 2335554443 34556777889999999999985 5555555566


Q ss_pred             EEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCccccccCcCCCCccceEEEEECCCCC
Q 007283          171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK----KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK  246 (609)
Q Consensus       171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~  246 (609)
                      -+.|++++.....-+...+-|+...|+|++++||-+--+|    .|+++|...++....-.    ..+.=.+-+|.||++
T Consensus       426 ~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT----~ta~DfsPaFD~d~r  501 (668)
T COG4946         426 WVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT----PTAYDFSPAFDPDGR  501 (668)
T ss_pred             EEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC----CcccccCcccCCCCc
Confidence            6668888877666666677899999999999999887665    57899988776543222    223345788999999


Q ss_pred             eEEEEe
Q 007283          247 QVLTAS  252 (609)
Q Consensus       247 ~l~s~s  252 (609)
                      +|.--|
T Consensus       502 yLYfLs  507 (668)
T COG4946         502 YLYFLS  507 (668)
T ss_pred             EEEEEe
Confidence            876554

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.86  E-value=9.1e-06  Score=75.52  Aligned_cols=277  Identities=13%  Similarity=0.093  Sum_probs=151.4

Q ss_pred             CCcEEEEcCCCCce--eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe----cCCccEEEE
Q 007283           78 SGTVRIWGAHNDHV--LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD----GHSRRVLSC  151 (609)
Q Consensus        78 d~~i~vWd~~~~~~--~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~v~~~  151 (609)
                      ++-|.+|++++...  -..++-...+.++-++|+|++++|.++.......-+-.+.|+......++.    ....+-..+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            56799999985432  112233456678999999999999888754333345567777531111221    111233778


Q ss_pred             EEeeCCCeEEEEecCCCeEEEEeCCC-Ccee--eeccCcccc----------eEEEEEcCCCCEEEEEeC-CCcEEEEeC
Q 007283          152 AFKPSRPFRIATCGEDFLVNFYEGPP-FKFK--LSHRGHSNF----------VNCVRFSPDGSKFISVSS-DKKGIIYDG  217 (609)
Q Consensus       152 ~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~--~~~~~h~~~----------v~~l~~s~dg~~l~s~~~-d~~i~iwd~  217 (609)
                      ++++++++++++--.-+.|.++-... +...  .....|...          +.+..|+|++++|++..- --.|.+|+.
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999998776666668888885422 2111  111122222          778899999998887753 336889998


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecccCCCCce--EEEeccC---CCCCccceEEEEEE
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDISEDNHGKL--KKTLTPS---GSGGVDDMLVGCLW  291 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~  291 (609)
                      ..++.-..-...-.....=..|.|+|++++....+. +++|-+|+.+.. .++.  ++.+..-   ..+......+....
T Consensus       175 ~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         175 DDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA-VGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             ccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC-CceEEEeeeeccCccccCCCCceeEEEECC
Confidence            866542211111112344578999999998777765 789999998753 2222  2222111   11111111122233


Q ss_pred             cCCeEEEEEc-CCcEEEEeCCCCCCCcee---eeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          292 QNDFLVIVSL-GGTISIFSANDLEKSPLQ---LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       292 ~~~~~~~~~~-~g~i~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                      ++.+|++... ...|.+|.++........   ...+-.......+.+.+.-++++.-.+.+|.++..+
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d  321 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD  321 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence            4445544322 235666766554332211   111222233444443333334444455667777543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=1e-08  Score=98.81  Aligned_cols=203  Identities=16%  Similarity=0.271  Sum_probs=145.5

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc------eeeEEEeecccceeEEEECCCCCEEEEEECCCC
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH------VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKG  123 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~  123 (609)
                      +..|.||...|..++--.+.+-+++++.|+||++|.+....      .+..+++.|..+|..+-|-.|-+.++++..+  
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~g--  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGG--  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCc--
Confidence            44578999999998877777889999999999999886421      3566778899999999999999888876432  


Q ss_pred             cceEEEEEcCCCCeeEEEe---cCCccEEEEEEee--CCCeEEEEecCCCeEEEEeCCCCceeeec-----cCcccceEE
Q 007283          124 KSLVRAFMWDSGTNVGEFD---GHSRRVLSCAFKP--SRPFRIATCGEDFLVNFYEGPPFKFKLSH-----RGHSNFVNC  193 (609)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~---~h~~~v~~~~~~p--~~~~~i~t~~~d~~i~~~~~~~~~~~~~~-----~~h~~~v~~  193 (609)
                         +.+|+--.++.+....   .|. .+.-+..-|  +.+.+++.|+...+++++|.+...+..++     .+....+.+
T Consensus       806 ---iHlWDPFigr~Laq~~dapk~~-a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~  881 (1034)
T KOG4190|consen  806 ---IHLWDPFIGRLLAQMEDAPKEG-AGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRA  881 (1034)
T ss_pred             ---ceeecccccchhHhhhcCcccC-CCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeE
Confidence               3444433455544321   222 222222223  45556777789999999998877665543     345567889


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEE-eec
Q 007283          194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKV-WDI  262 (609)
Q Consensus       194 l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~i-wd~  262 (609)
                      ++..+.|++++.+-.+|.+.+.|.++|+.+..+.+.   ......++ .|..+.|+....|.++.+ |-.
T Consensus       882 iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---ecdllqla-apsdq~L~~saldHslaVnWha  947 (1034)
T KOG4190|consen  882 IAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---ECDLLQLA-APSDQALAQSALDHSLAVNWHA  947 (1034)
T ss_pred             EEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---cchhhhhc-CchhHHHHhhcccceeEeeehh
Confidence            999999999999999999999999999988776532   22233333 356667777778888888 854

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=4.4e-06  Score=84.56  Aligned_cols=153  Identities=14%  Similarity=0.154  Sum_probs=110.0

Q ss_pred             ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeC-----------CCeEEEEecCCCeE
Q 007283          102 RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS-----------RPFRIATCGEDFLV  170 (609)
Q Consensus       102 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~-----------~~~~i~t~~~d~~i  170 (609)
                      +-.++.|+|.|.....+  +.   .+.+.+-..-+.+..+..|...|+++.|.|-           ...+||++...|.|
T Consensus        17 N~~A~Dw~~~GLiAygs--hs---lV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   17 NRNAADWSPSGLIAYGS--HS---LVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             cccccccCccceEEEec--Cc---eEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            46788899998433322  22   3444444455667788899999999999763           23568888888999


Q ss_pred             EEEeCCCCceeeeccCcccceEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC-CC
Q 007283          171 NFYEGPPFKFKLSHRGHSNFVNCVRFSP---DG-SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP-DG  245 (609)
Q Consensus       171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~---dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~  245 (609)
                      .+||.........+..|..++..++|-+   +. ..|+.-..-.++-+|+..+|+++.....  +| ....++.+.| |.
T Consensus        92 il~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y--s~-~iLs~f~~DPfd~  168 (1062)
T KOG1912|consen   92 ILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY--SH-EILSCFRVDPFDS  168 (1062)
T ss_pred             EEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc--CC-cceeeeeeCCCCc
Confidence            9999888777777888899999888865   34 3666677788999999999988766531  22 2344588888 45


Q ss_pred             CeEEEEeCCCcEEEeec
Q 007283          246 KQVLTASADKSAKVWDI  262 (609)
Q Consensus       246 ~~l~s~s~d~~i~iwd~  262 (609)
                      +.+..-+..|.+.+.+.
T Consensus       169 rh~~~l~s~g~vl~~~~  185 (1062)
T KOG1912|consen  169 RHFCVLGSKGFVLSCKD  185 (1062)
T ss_pred             ceEEEEccCceEEEEec
Confidence            66666666777777764

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.84  E-value=3.7e-06  Score=94.43  Aligned_cols=240  Identities=12%  Similarity=0.081  Sum_probs=146.8

Q ss_pred             eeEEeecCC-CCeEEEe-CCCEEEEEeCCCCcccccccc--CC------------CCcEEEEECCCCCEEEEEe-CCCcE
Q 007283           19 GILISGHPK-SNSILYT-NGRSVIILDLSNPLQVSIYGE--HA------------YPATVARFSPNGEWIASAD-VSGTV   81 (609)
Q Consensus        19 ~~~~~~~~~-~~~l~~~-~~~~~~i~~~~~~~~~~~~~~--h~------------~~v~~~~~sp~g~~las~~-~d~~i   81 (609)
                      |-.++.+++ |+.++.. +.++|.++|...... ..+.+  ..            ..-..++++++++.|..++ ..+.|
T Consensus       570 P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        570 PGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             CceEEEECCCCeEEEEECCCCeEEEEeCCCCEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            345777765 4444443 357899999865433 22322  11            1246789999988766555 45789


Q ss_pred             EEEcCCCCceeeEEEeec-----------------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec-
Q 007283           82 RIWGAHNDHVLKKEFRVL-----------------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG-  143 (609)
Q Consensus        82 ~vWd~~~~~~~~~~~~~~-----------------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  143 (609)
                      +++|..++.+.  .+.+.                 -.....++|+|++..+..+..+.  ..++.++...+.. ..+.+ 
T Consensus       649 r~id~~~~~V~--tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~--~~I~v~d~~~g~v-~~~~G~  723 (1057)
T PLN02919        649 REIDFVNETVR--TLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQ--HQIWEYNISDGVT-RVFSGD  723 (1057)
T ss_pred             EEEecCCCEEE--EEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCC--CeEEEEECCCCeE-EEEecC
Confidence            99998765421  22110                 01235789999654544433222  2344444333321 11211 


Q ss_pred             --------C------CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc------------C---------cc
Q 007283          144 --------H------SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR------------G---------HS  188 (609)
Q Consensus       144 --------h------~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~------------~---------h~  188 (609)
                              +      -.....++++|++..++++-+.++.|+.||..++.......            +         ..
T Consensus       724 G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l  803 (1057)
T PLN02919        724 GYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL  803 (1057)
T ss_pred             CccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence                    1      12345799999998667777788999999976543221100            0         11


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCc----------CCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283          189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSP----------EDGHKGSVYAVSWSPDGKQVLTASADKSAK  258 (609)
Q Consensus       189 ~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~----------~~~h~~~V~~l~~spd~~~l~s~s~d~~i~  258 (609)
                      ..-..++|+++|..+++-+.+++|++||..++........          ..+.-.....++++++|+.+++-+.++.|+
T Consensus       804 ~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir  883 (1057)
T PLN02919        804 QHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR  883 (1057)
T ss_pred             cCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence            1235889999999888888899999999877654321100          011123467899999999999999999999


Q ss_pred             Eeeccc
Q 007283          259 VWDISE  264 (609)
Q Consensus       259 iwd~~~  264 (609)
                      +||+..
T Consensus       884 vid~~~  889 (1057)
T PLN02919        884 YLDLNK  889 (1057)
T ss_pred             EEECCC
Confidence            999864

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.83  E-value=2.3e-05  Score=75.83  Aligned_cols=252  Identities=13%  Similarity=0.110  Sum_probs=131.7

Q ss_pred             CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC----------CCcEEEEcCCCCceeeEEEeecc------
Q 007283           37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV----------SGTVRIWGAHNDHVLKKEFRVLS------  100 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~----------d~~i~vWd~~~~~~~~~~~~~~~------  100 (609)
                      +++.+.|..+.+.+..+..-..+- .+ +||||+.|..+..          +..|.+||..+.+... ++..-.      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~-~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA-DIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe-EEccCCCchhhc
Confidence            689999998887765443212222 23 9999999875544          7899999999877543 232211      


Q ss_pred             -cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC--
Q 007283          101 -GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP--  177 (609)
Q Consensus       101 -~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~--  177 (609)
                       .....+++||||++|+...... ...+.+.+....+.+.++.-           |++...+.++.....+.+-|...  
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p-~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~~~Dg~~~~  171 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSP-SPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMHCRDGSLAK  171 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCC-CCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEEeecCceEE
Confidence             1234789999999998765332 22455666666665555432           33333233322222222222111  


Q ss_pred             ------Cce-ee---eccCcccceE-EEEEcC-CCCEEEEEeCCCcEEEEeCCC-----CccccccCcCC----CCccce
Q 007283          178 ------FKF-KL---SHRGHSNFVN-CVRFSP-DGSKFISVSSDKKGIIYDGKT-----ADKIGELSPED----GHKGSV  236 (609)
Q Consensus       178 ------~~~-~~---~~~~h~~~v~-~l~~s~-dg~~l~s~~~d~~i~iwd~~~-----~~~~~~~~~~~----~h~~~V  236 (609)
                            ++. ..   .+.+...++. .-.|++ +|+++..... |++.+.|...     .+.+..+....    =..+..
T Consensus       172 v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~  250 (352)
T TIGR02658       172 VGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGW  250 (352)
T ss_pred             EEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcc
Confidence                  110 00   1111000000 004456 7766554444 9999998433     22222221110    023455


Q ss_pred             EEEEECCCCCeEEEEeC----------CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC-eEEEEE-cCCc
Q 007283          237 YAVSWSPDGKQVLTASA----------DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND-FLVIVS-LGGT  304 (609)
Q Consensus       237 ~~l~~spd~~~l~s~s~----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~g~  304 (609)
                      .-++++|++++++....          .++|.++|..   .++.+..+.....    -..+.+..++. .+++.. .++.
T Consensus       251 q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~---t~kvi~~i~vG~~----~~~iavS~Dgkp~lyvtn~~s~~  323 (352)
T TIGR02658       251 QQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAK---TGKRLRKIELGHE----IDSINVSQDAKPLLYALSTGDKT  323 (352)
T ss_pred             eeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECC---CCeEEEEEeCCCc----eeeEEECCCCCeEEEEeCCCCCc
Confidence            66999999998777421          2578888876   3455554432211    01122222344 444443 4566


Q ss_pred             EEEEeCC
Q 007283          305 ISIFSAN  311 (609)
Q Consensus       305 i~~~~~~  311 (609)
                      +.+++..
T Consensus       324 VsViD~~  330 (352)
T TIGR02658       324 LYIFDAE  330 (352)
T ss_pred             EEEEECc
Confidence            7777754

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.82  E-value=1.4e-07  Score=88.15  Aligned_cols=97  Identities=24%  Similarity=0.319  Sum_probs=77.3

Q ss_pred             ecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC
Q 007283          164 CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP  243 (609)
Q Consensus       164 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp  243 (609)
                      .|..+.+.+|..+.++. ....||...++.|+|+||+++|+++..|..|++-..-.-..+..+  .-||+.-|..++.-+
T Consensus       128 agD~~~~di~s~~~~~~-~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf--clGH~eFVS~isl~~  204 (390)
T KOG3914|consen  128 AGDVYSFDILSADSGRC-EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF--CLGHKEFVSTISLTD  204 (390)
T ss_pred             cCCceeeeeecccccCc-chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh--ccccHhheeeeeecc
Confidence            45556777777665433 345689999999999999999999999999998765554555544  248999999999976


Q ss_pred             CCCeEEEEeCCCcEEEeeccc
Q 007283          244 DGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       244 d~~~l~s~s~d~~i~iwd~~~  264 (609)
                      + +.|+++|+|+++++||+..
T Consensus       205 ~-~~LlS~sGD~tlr~Wd~~s  224 (390)
T KOG3914|consen  205 N-YLLLSGSGDKTLRLWDITS  224 (390)
T ss_pred             C-ceeeecCCCCcEEEEeccc
Confidence            5 5689999999999999973

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.81  E-value=4.2e-06  Score=81.53  Aligned_cols=305  Identities=15%  Similarity=0.231  Sum_probs=169.8

Q ss_pred             eeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC-----------CCcEEEEcCC
Q 007283           19 GILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV-----------SGTVRIWGAH   87 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~-----------d~~i~vWd~~   87 (609)
                      .+-+.++|.|.+|++.--..|.+|-..+=.+.+.|. |. .|.-+.|||+-+||+|=+.           ...++|||+.
T Consensus       213 etyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  213 ETYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFY-HP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeeEEecCCceEEEEEeccceeeecCccHHHHHhcc-CC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            346889999999999877779999876655555453 55 4999999999999998332           2579999999


Q ss_pred             CCceeeEEEeeccc--ce-eEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecC---CccEEEEEEeeCCCeEE
Q 007283           88 NDHVLKKEFRVLSG--RI-DDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGH---SRRVLSCAFKPSRPFRI  161 (609)
Q Consensus        88 ~~~~~~~~~~~~~~--~v-~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~i  161 (609)
                      ++. +++.|....+  .+ .-..||.|+++++..+.+.      +.++++.+ ...+.+-   ...|....|+|.+.. |
T Consensus       291 tG~-lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s------isIyEtps-f~lld~Kslki~gIr~FswsP~~~l-l  361 (698)
T KOG2314|consen  291 TGL-LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS------ISIYETPS-FMLLDKKSLKISGIRDFSWSPTSNL-L  361 (698)
T ss_pred             ccc-hhcceeccCCCccccceEEeccCCceeEEeccce------EEEEecCc-eeeecccccCCccccCcccCCCcce-E
Confidence            976 3445555322  22 3468999999999876432      33344433 1222221   245667788898653 3


Q ss_pred             EE-ecC--C--CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCcccccc
Q 007283          162 AT-CGE--D--FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS----------DKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       162 ~t-~~~--d--~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~----------d~~i~iwd~~~~~~~~~~  226 (609)
                      |= ...  +  ..+.+-.++..+.+++.+-|...=..|.|-.+|.+|+.--.          -..+-|+.++..+. ..-
T Consensus       362 AYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve  440 (698)
T KOG2314|consen  362 AYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVE  440 (698)
T ss_pred             EEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cce
Confidence            31 110  0  12233334444433333333322234677788888775321          11233444333221 110


Q ss_pred             CcCCCCccceEEEEECCCCCeEEEEeCC---CcEEEeecccCC-CCceEEEeccCCCCCccceEEEEEEc--CCeEEEE-
Q 007283          227 SPEDGHKGSVYAVSWSPDGKQVLTASAD---KSAKVWDISEDN-HGKLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIV-  299 (609)
Q Consensus       227 ~~~~~h~~~V~~l~~spd~~~l~s~s~d---~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-  299 (609)
                      .  -.-+..|...+|-|.|..++..+..   .++.+|.+.... ..++++.+...       ..-...|+  +.+++++ 
T Consensus       441 ~--velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~-------~~N~vfwsPkG~fvvva~  511 (698)
T KOG2314|consen  441 V--VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKK-------FANTVFWSPKGRFVVVAA  511 (698)
T ss_pred             e--eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhccc-------ccceEEEcCCCcEEEEEE
Confidence            0  1245678999999999988877653   568888776311 11222222110       11123344  4455544 


Q ss_pred             --EcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecC
Q 007283          300 --SLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYD  346 (609)
Q Consensus       300 --~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~d  346 (609)
                        +..|.+..++..-..-.......|.. -+.+.+ ++.+++++|++.-
T Consensus       512 l~s~~g~l~F~D~~~a~~k~~~~~eh~~-at~veW-DPtGRYvvT~ss~  558 (698)
T KOG2314|consen  512 LVSRRGDLEFYDTDYADLKDTASPEHFA-ATEVEW-DPTGRYVVTSSSS  558 (698)
T ss_pred             ecccccceEEEecchhhhhhccCccccc-cccceE-CCCCCEEEEeeeh
Confidence              44677888876521111111122321 123334 4567888888753

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.80  E-value=8.2e-08  Score=96.01  Aligned_cols=287  Identities=17%  Similarity=0.255  Sum_probs=171.8

Q ss_pred             ccceEEEEECCCCCeEEEEeCCCcEEEeecccC-CCCceEEEeccCCCCCccceEEEEEEc----CCeEEEEEcCCcEEE
Q 007283          233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISED-NHGKLKKTLTPSGSGGVDDMLVGCLWQ----NDFLVIVSLGGTISI  307 (609)
Q Consensus       233 ~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~i~~  307 (609)
                      .+.+..+..+|.|+-++.++.-| +.+-|+... ...+.+..+++-..   .+    .-|+    .++-++.......-+
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~v---ad----~qws~h~a~~~wiVsts~qkaii   95 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQV---AD----VQWSPHPAKPYWIVSTSNQKAII   95 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchh---cc----eecccCCCCceeEEecCcchhhh
Confidence            35677888999999999988765 555566432 12233333332211   11    1122    223333333333345


Q ss_pred             EeCCCCC--CCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEec
Q 007283          308 FSANDLE--KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGF  385 (609)
Q Consensus       308 ~~~~~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (609)
                      |++....  .....+.||...|+.+.|....+..+++++.|-.+..|+...-.         .+                
T Consensus        96 wnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~---------~p----------------  150 (1081)
T KOG0309|consen   96 WNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH---------RP----------------  150 (1081)
T ss_pred             hhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC---------cc----------------
Confidence            6543222  22346789999999999998888899999999999999753210         00                


Q ss_pred             cceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEE
Q 007283          386 DNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG  465 (609)
Q Consensus       386 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~g  465 (609)
                         ++.|..                                        |+..           .+.+.++--...+.+.
T Consensus       151 ---~ys~~~----------------------------------------w~s~-----------asqVkwnyk~p~vlas  176 (1081)
T KOG0309|consen  151 ---FYSTSS----------------------------------------WRSA-----------ASQVKWNYKDPNVLAS  176 (1081)
T ss_pred             ---eeeeec----------------------------------------cccc-----------CceeeecccCcchhhh
Confidence               111100                                        0000           1112222212223344


Q ss_pred             eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC
Q 007283          466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-VSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP  544 (609)
Q Consensus       466 s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~  544 (609)
                      +....|++||.+.+. .....+++|...|+.++|..- ...+.+.+.|+++++||........+.......+|+--+|-|
T Consensus       177 shg~~i~vwd~r~gs-~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~P  255 (1081)
T KOG0309|consen  177 SHGNDIFVWDLRKGS-TPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLP  255 (1081)
T ss_pred             ccCCceEEEeccCCC-cceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccc
Confidence            566789999998664 235677889999999999654 567888999999999997765443444445566787777877


Q ss_pred             CC--cEEEEEeCCCeEEEEEcCCC--------CCcceeEeccccCCeEEEEEc---------C--CCeEEEEeCCCcEEE
Q 007283          545 NN--SMVATGSLDTCVIIYEIDKP--------ASSRMTIKGAHLGGVYGLAFT---------D--EHSVVSSGEDACVRV  603 (609)
Q Consensus       545 d~--~~l~s~s~D~~v~vw~~~~~--------~~~~~~~~~~h~~~v~~~~~s---------~--~~~l~s~s~D~~i~~  603 (609)
                      =|  ..+--.-.+..|..++.+..        ...-.....||.+.|..+.|.         |  +-.|+|=|.|..+++
T Consensus       256 fg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrl  335 (1081)
T KOG0309|consen  256 FGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRL  335 (1081)
T ss_pred             cCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEe
Confidence            43  33332223334444443211        111233456899998877763         1  124999999999999


Q ss_pred             EEcc
Q 007283          604 WRLT  607 (609)
Q Consensus       604 W~~~  607 (609)
                      |.++
T Consensus       336 WpI~  339 (1081)
T KOG0309|consen  336 WPID  339 (1081)
T ss_pred             eecc
Confidence            9985

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.79  E-value=5.9e-08  Score=106.11  Aligned_cols=217  Identities=16%  Similarity=0.254  Sum_probs=151.1

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe-cCCcc
Q 007283           69 GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-GHSRR  147 (609)
Q Consensus        69 g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~  147 (609)
                      ++..+.+..+++..-|......+   ....+-..|..+.=+|-..+.++.+.+   ..++.|.|..+.++..+. .-...
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~~---~~k~~v~~v~r~~sHp~~~~Yltgs~d---gsv~~~~w~~~~~v~~~rt~g~s~ 2253 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV---MIKHPVENVRRMTSHPSDPYYLTGSQD---GSVRMFEWGHGQQVVCFRTAGNSR 2253 (2439)
T ss_pred             cccCCcccCCccccceeccccee---EeecccCceeeecCCCCCceEEecCCC---ceEEEEeccCCCeEEEeeccCcch
Confidence            34444455566665565443222   222334456666667766666665432   247889998888877664 22378


Q ss_pred             EEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCcccc
Q 007283          148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS---SDKKGIIYDGKTADKIG  224 (609)
Q Consensus       148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~d~~i~iwd~~~~~~~~  224 (609)
                      |+.+.|+-+|.. +..+..|+.+-+|...+ +.....+.|....+...|-.  ..+++++   +++.+.+||........
T Consensus      2254 vtr~~f~~qGnk-~~i~d~dg~l~l~q~~p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2254 VTRSRFNHQGNK-FGIVDGDGDLSLWQASP-KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred             hhhhhhcccCCc-eeeeccCCceeecccCC-cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccc
Confidence            999999988875 77788899999998763 44456677888888888866  5567765   57899999954333222


Q ss_pred             ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCc
Q 007283          225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT  304 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  304 (609)
                      .+  ...|.+.++++++.|..++|++||.+|.|++||++.   .++++++..             .....++++++..|.
T Consensus      2330 ~v--~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rq---rql~h~~~~-------------~~~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2330 LV--HTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQ---RQLRHTFQA-------------LDTREYFVTGSSEGN 2391 (2439)
T ss_pred             ee--eeecCCCceEEEEcCcceEEEecCCcCcEEEeehHH---HHHHHHhhh-------------hhhhheeeccCcccc
Confidence            22  257999999999999999999999999999999973   344444321             112457888999999


Q ss_pred             EEEEeCCCC
Q 007283          305 ISIFSANDL  313 (609)
Q Consensus       305 i~~~~~~~~  313 (609)
                      ++||.+.+.
T Consensus      2392 ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2392 IKIWRLSEF 2400 (2439)
T ss_pred             eEEEEcccc
Confidence            999998754

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.78  E-value=2.6e-07  Score=83.17  Aligned_cols=115  Identities=21%  Similarity=0.354  Sum_probs=78.8

Q ss_pred             eeEEEEcCC-CCEEEEEeCCCcEEEEEecCCeeee------eE--------EEecCCCceEEEEECCCCCEEEEEeCCCe
Q 007283          450 VTASAIAPD-GSEAIIGSQDGKLRVYSIRGDTLTE------EA--------VLEKHRGAVSVIRYSPDVSMFASGDVNRE  514 (609)
Q Consensus       450 ~~~~~~sp~-g~~l~~gs~dg~i~iw~~~~~~~~~------~~--------~~~~h~~~i~~v~~s~~~~~l~s~s~d~~  514 (609)
                      +++..|+|. ...+.-.+..|+|++-|++...+-.      ..        .+.+-...|..+.|+|+|+++++-+. .+
T Consensus       224 ItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-lt  302 (460)
T COG5170         224 ITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LT  302 (460)
T ss_pred             HhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ce
Confidence            555667773 3456667778999999986332100      00        11222457889999999999999776 47


Q ss_pred             EEEEEccCCceEEeeecCCC------------Cce---EEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          515 AIVWDRVSREVKLKNMLYHT------------ARI---NCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       515 v~iwd~~~~~~~~~~~~~h~------------~~i---~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      +++||+.....+++....|.            +.|   -.+.||.|.+.+.+|+..+.--++..++
T Consensus       303 vkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s  368 (460)
T COG5170         303 VKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS  368 (460)
T ss_pred             EEEEecccccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence            99999876555555543342            222   3578999999999999999888887543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.77  E-value=4.9e-08  Score=106.70  Aligned_cols=186  Identities=18%  Similarity=0.301  Sum_probs=136.6

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee-cccceeEEEECCCCCEEEE-EECCCCcceEEEEEcC
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV-LSGRIDDLQWSPDGLRIVA-CGDGKGKSLVRAFMWD  133 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~-~~~~~~~~~~~~~~~~  133 (609)
                      |=.+|.++.-+|.-.+-+||+.||.||+|....++.+. .++. .+..|+.+.|+..|..... .|||.      +-.|.
T Consensus      2207 ~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~-~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~------l~l~q 2279 (2439)
T KOG1064|consen 2207 PVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVV-CFRTAGNSRVTRSRFNHQGNKFGIVDGDGD------LSLWQ 2279 (2439)
T ss_pred             ccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEE-EeeccCcchhhhhhhcccCCceeeeccCCc------eeecc
Confidence            44678888889999999999999999999887655222 2222 2367999999998865543 33332      44566


Q ss_pred             CC-CeeEEEecCCccEEEEEEeeCCCeEEEEec---CCCeEEEEeC-CCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283          134 SG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCG---EDFLVNFYEG-PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       134 ~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~---~d~~i~~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                      .+ +.....+.|......+.|-..   .+++.|   .++.+.+||. .+.........|...++++++.|.-+.|++|+.
T Consensus      2280 ~~pk~~~s~qchnk~~~Df~Fi~s---~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIGS---LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             cCCcceeccccCCccccceeeeeh---hhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence            54 344567788877777777552   355553   3477899983 233333334789999999999999999999999


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      +|.+++||.+..+.++.+..            +. ...++++++..|.++||++++
T Consensus      2357 ~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~ 2399 (2439)
T KOG1064|consen 2357 KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSE 2399 (2439)
T ss_pred             cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccc
Confidence            99999999988777665531            33 467899999999999999874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=0.0001  Score=74.35  Aligned_cols=171  Identities=17%  Similarity=0.202  Sum_probs=120.2

Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe
Q 007283           58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN  137 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~  137 (609)
                      ....|++|+.+..|||.|+.||.++|-.+.++..-. ..+              |  |++.+.           +.   .
T Consensus        15 vkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~-~~~--------------g--laa~sn-----------Ls---m   63 (1189)
T KOG2041|consen   15 VKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDL-NKS--------------G--LAAASN-----------LS---M   63 (1189)
T ss_pred             ceEEEEEEcccCCeEEeccccceeEEEEccccCCcc-ccc--------------c--cccccc-----------cc---h
Confidence            346899999999999999999999999887643100 000              1  222110           00   1


Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec--cCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH--RGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      -.++.||...|..+.|..+... +.|...+|.|.+|-.-.+...-.+  ...+..|.+++|+.||..++.+..||.|++=
T Consensus        64 NQtLeGH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVG  142 (1189)
T KOG2041|consen   64 NQTLEGHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVG  142 (1189)
T ss_pred             hhhhccCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEE
Confidence            2357899999999999887764 889999999999976555443332  2345678999999999999999999999875


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      .+... .|..-. .++  -....+.|++|.+.++.+-..|.+.++|...
T Consensus       143 svdGN-RIwgKe-Lkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqg  187 (1189)
T KOG2041|consen  143 SVDGN-RIWGKE-LKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQG  187 (1189)
T ss_pred             eeccc-eecchh-cch--heccceeecccHHHHHhhhcCCcEEEecccc
Confidence            54332 222110 111  1234688999999888887889999999754

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.74  E-value=1.3e-08  Score=64.52  Aligned_cols=37  Identities=30%  Similarity=0.679  Sum_probs=34.6

Q ss_pred             cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEc
Q 007283           49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWG   85 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd   85 (609)
                      .+..+.+|++.|++++|+|++++||+++.|++|++||
T Consensus         3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4567899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.65  E-value=4e-05  Score=69.23  Aligned_cols=225  Identities=16%  Similarity=0.229  Sum_probs=120.5

Q ss_pred             EeecCCCCeEEEeCCCEEEEEeCCCCccc--cccccCCCC---cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceee--E
Q 007283           22 ISGHPKSNSILYTNGRSVIILDLSNPLQV--SIYGEHAYP---ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK--K   94 (609)
Q Consensus        22 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~--~~~~~h~~~---v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~--~   94 (609)
                      +..+++|+.|+...+..+.|=...++..-  ....-.+++   =..++||||+.+||.+...|+|+++|+.......  .
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p   82 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPP   82 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCc
Confidence            45667888888777777777665544321  111222332   4678999999999999999999999997543210  0


Q ss_pred             --EE-eecccceeEEEECCCC------CEEEEEECCCCcceEEEEEcCCC-----CeeEE--EecC-CccEEEEEEeeCC
Q 007283           95 --EF-RVLSGRIDDLQWSPDG------LRIVACGDGKGKSLVRAFMWDSG-----TNVGE--FDGH-SRRVLSCAFKPSR  157 (609)
Q Consensus        95 --~~-~~~~~~v~~~~~spdg------~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~h-~~~v~~~~~~p~~  157 (609)
                        .+ ......|..+.|-+-.      ..|+++.-..   .++-+....+     ....+  |..| ...|.++.++|..
T Consensus        83 ~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G---~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   83 AMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG---QLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             ccccCCccccceeeeEeeccccccccceeEEEEeccc---eeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence              01 1123467777776521      2344443111   1223332211     22222  3333 5679999999998


Q ss_pred             CeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCC--EEEEEeCCCc------EEEEeCCCCccccccCcC
Q 007283          158 PFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS--KFISVSSDKK------GIIYDGKTADKIGELSPE  229 (609)
Q Consensus       158 ~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~--~l~s~~~d~~------i~iwd~~~~~~~~~~~~~  229 (609)
                      ...++.|.....-..+.           .-...+++=....+..  ..++...|..      -.+|..-+.+....   .
T Consensus       160 ~LLlVgG~~~~~~~~s~-----------a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~---~  225 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSK-----------ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSR---Q  225 (282)
T ss_pred             CEEEEeccCCCCCcccc-----------ccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeec---c
Confidence            76555554332100000           0011122222222211  1122222221      12222111111111   1


Q ss_pred             CCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ......|..|..||||+.|++...+|.|.+|++.
T Consensus       226 ~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iP  259 (282)
T PF15492_consen  226 GQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIP  259 (282)
T ss_pred             ccCCCceEEEEECCCCCEEEEEEcCCeEEEEecC
Confidence            1235679999999999999999999999999985

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.64  E-value=9.6e-06  Score=81.38  Aligned_cols=297  Identities=15%  Similarity=0.208  Sum_probs=163.0

Q ss_pred             ccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCC
Q 007283          233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND  312 (609)
Q Consensus       233 ~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  312 (609)
                      .....++.|.....++++||.||.+++-.+........+.     +                 ++.++            
T Consensus        14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~-----g-----------------laa~s------------   59 (1189)
T KOG2041|consen   14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS-----G-----------------LAAAS------------   59 (1189)
T ss_pred             CceEEEEEEcccCCeEEeccccceeEEEEccccCCccccc-----c-----------------ccccc------------
Confidence            3467899999999999999999999998875321100000     0                 00000            


Q ss_pred             CCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccc--cceeccccccceeEeeeeCCcEEEEeccceEE
Q 007283          313 LEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGY--GGKLQRKENSQIKCFAAIEEEIVTSGFDNKIW  390 (609)
Q Consensus       313 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  390 (609)
                      .......+.||...|.-+.|... .+.+.|...+|.|.+|.+=.+.  ..+......+.+..+                 
T Consensus        60 nLsmNQtLeGH~~sV~vvTWNe~-~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~Sm-----------------  121 (1189)
T KOG2041|consen   60 NLSMNQTLEGHNASVMVVTWNEN-NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSM-----------------  121 (1189)
T ss_pred             ccchhhhhccCcceEEEEEeccc-cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEE-----------------
Confidence            01112457899999999988743 4567788899999999653321  111111111111111                 


Q ss_pred             EEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCc
Q 007283          391 RVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGK  470 (609)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~  470 (609)
                      .|+..               .+.+++...++..++ ++-+|.++|...-.      .....-+-++||.+.+..+-..|.
T Consensus       122 sWn~d---------------G~kIcIvYeDGavIV-GsvdGNRIwgKeLk------g~~l~hv~ws~D~~~~Lf~~ange  179 (1189)
T KOG2041|consen  122 SWNLD---------------GTKICIVYEDGAVIV-GSVDGNRIWGKELK------GQLLAHVLWSEDLEQALFKKANGE  179 (1189)
T ss_pred             EEcCC---------------CcEEEEEEccCCEEE-Eeeccceecchhcc------hheccceeecccHHHHHhhhcCCc
Confidence            12111               112223333222222 22222233311000      011234567888888888888899


Q ss_pred             EEEEEecCCee-----eee----EEEecCCCceEEEEE--------CCCCCEEEEEeCCCeEEEEEccCCceEEeeecCC
Q 007283          471 LRVYSIRGDTL-----TEE----AVLEKHRGAVSVIRY--------SPDVSMFASGDVNREAIVWDRVSREVKLKNMLYH  533 (609)
Q Consensus       471 i~iw~~~~~~~-----~~~----~~~~~h~~~i~~v~~--------s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h  533 (609)
                      .+++|.+++..     ...    ..+......|..+.|        -||...+|.+...|.+.|..-++...+.  +...
T Consensus       180 ~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pv--v~dt  257 (1189)
T KOG2041|consen  180 THLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPV--VVDT  257 (1189)
T ss_pred             EEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCe--EEec
Confidence            99999876521     110    111111222333433        3577889999999988887544433222  1222


Q ss_pred             CCceEEEEECCCCcEEEEEeCCC---------eEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEE
Q 007283          534 TARINCLAWSPNNSMVATGSLDT---------CVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVW  604 (609)
Q Consensus       534 ~~~i~~l~~s~d~~~l~s~s~D~---------~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W  604 (609)
                      .-.|....|+++|..||.++.|.         .|.++..-  + .....+.-...-|+++.|-....-+.-..|+.|.+=
T Consensus       258 gm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~--G-~i~gtlkvpg~~It~lsWEg~gLriA~Avdsfiyfa  334 (1189)
T KOG2041|consen  258 GMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPY--G-HIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFA  334 (1189)
T ss_pred             ccEeecceecCCCcEEEEccCcccccCccccceEEEeccc--h-hheEEEecCCceeeeeEEcCCceEEEEEecceEEEE
Confidence            35688999999999999888664         34444311  1 222223334455777777644444555566666665


Q ss_pred             EccC
Q 007283          605 RLTP  608 (609)
Q Consensus       605 ~~~~  608 (609)
                      ++.|
T Consensus       335 nIRP  338 (1189)
T KOG2041|consen  335 NIRP  338 (1189)
T ss_pred             eecc
Confidence            5554

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.64  E-value=1e-06  Score=79.02  Aligned_cols=135  Identities=18%  Similarity=0.277  Sum_probs=101.4

Q ss_pred             eEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC-CCEEEEEeCCCeEEEEEccC-CceEEe
Q 007283          451 TASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-VSMFASGDVNREAIVWDRVS-REVKLK  528 (609)
Q Consensus       451 ~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd~~~-~~~~~~  528 (609)
                      .++.+++.+..++++..+|.+.+-+.....+...+..+.|.-.++..+|+.. -..+.+|+.|+.+..||++- .+....
T Consensus       125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~  204 (339)
T KOG0280|consen  125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH  204 (339)
T ss_pred             eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence            4567788888899999999999666655556555678999999999999755 46888999999999999873 333333


Q ss_pred             eecCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc
Q 007283          529 NMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT  587 (609)
Q Consensus       529 ~~~~h~~~i~~l~~s~-d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s  587 (609)
                      ....|..+|.++.=|| +..+++||+.|-.|++||....+..  .....-.++||.+..+
T Consensus       205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP--l~~~~v~GGVWRi~~~  262 (339)
T KOG0280|consen  205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP--LFKAKVGGGVWRIKHH  262 (339)
T ss_pred             cceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc--cccCccccceEEEEec
Confidence            3556899999998876 5789999999999999998643212  1122234667776654

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.62  E-value=0.00013  Score=73.55  Aligned_cols=97  Identities=12%  Similarity=0.055  Sum_probs=59.9

Q ss_pred             EEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283          160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV  239 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l  239 (609)
                      .+.+++.++.+..+|..+++..-.+.-..........  ++..++.++.++.+..+|..+++.+.....    .+.+.+.
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~----~~~~~~~  140 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWRAKL----SSEVLSP  140 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeeeecc----CceeecC
Confidence            3666677777888887776655333222211112222  456778888999999999999987765431    1222211


Q ss_pred             EECCCCCeEEEEeCCCcEEEeecc
Q 007283          240 SWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       240 ~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ... .+..++.++.++.+..||..
T Consensus       141 p~v-~~~~v~v~~~~g~l~a~d~~  163 (377)
T TIGR03300       141 PLV-ANGLVVVRTNDGRLTALDAA  163 (377)
T ss_pred             CEE-ECCEEEEECCCCeEEEEEcC
Confidence            111 24566777789999999986

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.61  E-value=1.4e-05  Score=70.95  Aligned_cols=117  Identities=10%  Similarity=-0.002  Sum_probs=86.3

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeee-EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE-
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEE-AVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL-  527 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~-~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~-  527 (609)
                      +..++++||++++++-+....|..|.++...--.+ .....-+..=.+.+||.....+|++.+|+++-|||++...... 
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~  240 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMA  240 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchh
Confidence            56788999999999999999999999875432112 2333444556788999999999999999999999987644322 


Q ss_pred             ---eeecCCCCceEEEEECCCCc--EEEEEeCCCeEEEEEcCCC
Q 007283          528 ---KNMLYHTARINCLAWSPNNS--MVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       528 ---~~~~~h~~~i~~l~~s~d~~--~l~s~s~D~~v~vw~~~~~  566 (609)
                         +....|.+.+..+.|||-|.  +|+-.-.-+-+.|-|+...
T Consensus       241 ~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~  284 (344)
T KOG4532|consen  241 EISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNY  284 (344)
T ss_pred             hhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccC
Confidence               12335889999999998663  4444445566778887654

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.61  E-value=0.00018  Score=67.75  Aligned_cols=219  Identities=14%  Similarity=0.174  Sum_probs=133.1

Q ss_pred             EeecCCCCeEEEe--CCCEEEEEeCCCCccccccccCCCCcEEEEEC-CCCCEEEEEeCCCcEEEEcCCCCceee-EEEe
Q 007283           22 ISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFS-PNGEWIASADVSGTVRIWGAHNDHVLK-KEFR   97 (609)
Q Consensus        22 ~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~s-p~g~~las~~~d~~i~vWd~~~~~~~~-~~~~   97 (609)
                      ..+.+..+.|++.  .++.|+.++..++.... +... + ...+++. ++|+++++..  +.+.++|..+++... ....
T Consensus         5 p~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~-~-~~G~~~~~~~g~l~v~~~--~~~~~~d~~~g~~~~~~~~~   79 (246)
T PF08450_consen    5 PVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP-G-PNGMAFDRPDGRLYVADS--GGIAVVDPDTGKVTVLADLP   79 (246)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS-S-EEEEEEECTTSEEEEEET--TCEEEEETTTTEEEEEEEEE
T ss_pred             eEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC-C-CceEEEEccCCEEEEEEc--CceEEEecCCCcEEEEeecc
Confidence            4566644455554  35788889987766533 2221 2 5666777 7887777653  445666888775322 1111


Q ss_pred             -e--cccceeEEEECCCCCEEEEEECCCCc-ce--EEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           98 -V--LSGRIDDLQWSPDGLRIVACGDGKGK-SL--VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        98 -~--~~~~v~~~~~spdg~~l~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                       .  .......+++.|+|...++....... ..  .+++.++.......+...-.....++|+|++..++++-+..+.|.
T Consensus        80 ~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~  159 (246)
T PF08450_consen   80 DGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIW  159 (246)
T ss_dssp             TTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEE
T ss_pred             CCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEECCcchheeecccccceeE
Confidence             1  23457889999999977765432211 11  345566555333333333455788999999987677777777777


Q ss_pred             EEeCC--CCce-----eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEEC-C
Q 007283          172 FYEGP--PFKF-----KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS-P  243 (609)
Q Consensus       172 ~~~~~--~~~~-----~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s-p  243 (609)
                      .++..  ..+.     ...+.+-....-.+++..+|+++++.-..+.|.+++.. ++.+..+..  . ...+++++|. |
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~--p-~~~~t~~~fgg~  235 (246)
T PF08450_consen  160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIEL--P-VPRPTNCAFGGP  235 (246)
T ss_dssp             EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE---S-SSSEEEEEEEST
T ss_pred             EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcC--C-CCCEEEEEEECC
Confidence            77653  2211     11222222346779999999988877788999999987 777665532  1 3478999994 6


Q ss_pred             CCCeEE
Q 007283          244 DGKQVL  249 (609)
Q Consensus       244 d~~~l~  249 (609)
                      +.+.|+
T Consensus       236 ~~~~L~  241 (246)
T PF08450_consen  236 DGKTLY  241 (246)
T ss_dssp             TSSEEE
T ss_pred             CCCEEE
Confidence            655443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.53  E-value=2.9e-05  Score=87.37  Aligned_cols=199  Identities=11%  Similarity=0.063  Sum_probs=128.5

Q ss_pred             ceeEEeecCCCCeEEEeC--CCEEEEEeCCCCcccccccc--CC---------------CCcEEEEECC-CCCEEEEEeC
Q 007283           18 RGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGE--HA---------------YPATVARFSP-NGEWIASADV   77 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~--h~---------------~~v~~~~~sp-~g~~las~~~   77 (609)
                      +|..++++++++.|+...  .+.|.++|+.++.... +.+  ..               ..-..++|+| +|.+.++...
T Consensus       625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~t-lag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~  703 (1057)
T PLN02919        625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETVRT-LAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG  703 (1057)
T ss_pred             CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEE-EeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence            577889998888654443  4688888987755422 211  00               1125789999 5667777778


Q ss_pred             CCcEEEEcCCCCceeeEEEeec---------------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEE--
Q 007283           78 SGTVRIWGAHNDHVLKKEFRVL---------------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGE--  140 (609)
Q Consensus        78 d~~i~vWd~~~~~~~~~~~~~~---------------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--  140 (609)
                      ++.|++||..++...  .+.+.               -.....++|+|||++|.++..+.  ..++.++.+.+.....  
T Consensus       704 ~~~I~v~d~~~g~v~--~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n--~~Irv~D~~tg~~~~~~g  779 (1057)
T PLN02919        704 QHQIWEYNISDGVTR--VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSES--SSIRALDLKTGGSRLLAG  779 (1057)
T ss_pred             CCeEEEEECCCCeEE--EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCC--CeEEEEECCCCcEEEEEe
Confidence            899999998775432  11110               11345799999998776654332  3466666654432110  


Q ss_pred             -----------Eec--------CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec-------------cCcc
Q 007283          141 -----------FDG--------HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH-------------RGHS  188 (609)
Q Consensus       141 -----------~~~--------h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~-------------~~h~  188 (609)
                                 +-.        .-.....++++|++. ++++-..++.|++||..++......             .++.
T Consensus       780 g~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~-LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l  858 (1057)
T PLN02919        780 GDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ-IYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQL  858 (1057)
T ss_pred             cccccCcccccccCCCCchhhhhccCCceeeEeCCCc-EEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccccccc
Confidence                       000        011235788999987 5777788899999997765443211             1122


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283          189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       189 ~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                      .....++++++|+.+++-+.++.|++||..+++.
T Consensus       859 ~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        859 SEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence            3567899999999888888899999999887654

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.51  E-value=5.5e-07  Score=56.93  Aligned_cols=36  Identities=31%  Similarity=0.586  Sum_probs=34.1

Q ss_pred             eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 007283          484 EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD  519 (609)
Q Consensus       484 ~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd  519 (609)
                      ..++.+|.+.|++|+|+|++.++++++.|++|++||
T Consensus         4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.50  E-value=0.00033  Score=70.64  Aligned_cols=135  Identities=11%  Similarity=0.089  Sum_probs=80.7

Q ss_pred             CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283          459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN  538 (609)
Q Consensus       459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~  538 (609)
                      +..+.+++.+|.++.||.+++.......   .. ......  .++..+..++.|+.+..+|..+++...+..........
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~-~~~~p~--~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~s  314 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRVLWKRD---AS-SYQGPA--VDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLT  314 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcEEEeec---cC-CccCce--EeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccc
Confidence            4567778889999999987775432221   11 111222  24566777788999999998777654332111111122


Q ss_pred             EEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeE-EEEEcCCCeEEEEeCCCcEEEE
Q 007283          539 CLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVY-GLAFTDEHSVVSSGEDACVRVW  604 (609)
Q Consensus       539 ~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~-~~~~s~~~~l~s~s~D~~i~~W  604 (609)
                      ....  .+..|++++.||.|.++|..++. .+... ..+...++ +-++.+ +.|+.++.||.|..+
T Consensus       315 sp~i--~g~~l~~~~~~G~l~~~d~~tG~-~~~~~-~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       315 APAV--VGGYLVVGDFEGYLHWLSREDGS-FVARL-KTDGSGIASPPVVVG-DGLLVQTRDGDLYAF  376 (377)
T ss_pred             cCEE--ECCEEEEEeCCCEEEEEECCCCC-EEEEE-EcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence            2222  36688899999999999987643 33333 22333333 333445 457789999988754

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.48  E-value=1.8e-06  Score=83.71  Aligned_cols=209  Identities=14%  Similarity=0.180  Sum_probs=122.9

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-------CceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-------FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-------~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                      +..+.||+..|..++--.+. .-+++++.|.++++|...+       ..+..++..|+.+|..+.|..+.+.++  +.|+
T Consensus       728 L~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~--ScD~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIA--SCDG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceee--eccC
Confidence            45678999988877443332 2488999999999997533       346678899999999999999987665  4689


Q ss_pred             cEEEEeCCCCccccccCcCCCC--ccceEEEEECCCCCeEEEE-eCCCcEEEeecccCCCCceEEEeccCCCCCc--cce
Q 007283          211 KGIIYDGKTADKIGELSPEDGH--KGSVYAVSWSPDGKQVLTA-SADKSAKVWDISEDNHGKLKKTLTPSGSGGV--DDM  285 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~~~h--~~~V~~l~~spd~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~--~~~  285 (609)
                      .+.+||+..+..+.++.....|  .+.|.++. +-+...+..+ +...+++++|.+..   .....+........  ...
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~DaRsc---e~~~E~kVcna~~Pna~~R  880 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFDARSC---EWTCELKVCNAPGPNALTR  880 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeeecccc---cceeeEEeccCCCCchhee
Confidence            9999999888876654322222  22333332 1133344444 67899999998743   23222221111111  112


Q ss_pred             EEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEE-EecCc
Q 007283          286 LVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVK-WIQGI  356 (609)
Q Consensus       286 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~-W~~~~  356 (609)
                      .+.....++.++++-..|.+.+.+.+...... ...--......++  .+..+.++....|.++.+ |..-.
T Consensus       881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN-swrpmecdllqla--apsdq~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  881 AIAVADKGNKLAAALSNGCIAILDARNGKVIN-SWRPMECDLLQLA--APSDQALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             EEEeccCcchhhHHhcCCcEEEEecCCCceec-cCCcccchhhhhc--CchhHHHHhhcccceeEeeehhcC
Confidence            23334456677777777888877755321100 0000001111111  223356677777888887 85443

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.45  E-value=6.5e-05  Score=66.77  Aligned_cols=191  Identities=14%  Similarity=0.100  Sum_probs=115.7

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCC-CEEEEEECCCCcceEEEEEcCCCCeeEEEecCCc
Q 007283           68 NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR  146 (609)
Q Consensus        68 ~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  146 (609)
                      .--+||.|+..|...+|...+.+.+......+...|.-+.=--|. ..+..+..+   +.+++.+.+.+....  .-|..
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~snd---ht~k~~~~~~~s~~~--~~h~~  157 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASND---HTGKTMVVSGDSNKF--AVHNQ  157 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCC---cceeEEEEecCcccc--eeecc
Confidence            345889999999999999987665544444444433211100011 122222222   234444444332211  12333


Q ss_pred             c--EEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-c-eee-eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 007283          147 R--VLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-K-FKL-SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD  221 (609)
Q Consensus       147 ~--v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-~-~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~  221 (609)
                      .  +.+++++|++.+ .++.|....+..|.++.- + ... ......+.=.+..|+.....+|++..||++.|||++.-.
T Consensus       158 ~~~~ns~~~snd~~~-~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~  236 (344)
T KOG4532|consen  158 NLTQNSLHYSNDPSW-GSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMA  236 (344)
T ss_pred             ccceeeeEEcCCCce-EEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence            2  789999999986 666676677888865432 1 222 122233344677899998999999999999999987643


Q ss_pred             ccccc--CcCCCCccceEEEEECCCCC--eEEEEeCCCcEEEeeccc
Q 007283          222 KIGEL--SPEDGHKGSVYAVSWSPDGK--QVLTASADKSAKVWDISE  264 (609)
Q Consensus       222 ~~~~~--~~~~~h~~~V~~l~~spd~~--~l~s~s~d~~i~iwd~~~  264 (609)
                      .....  +....|++.+..+.|+|-|.  +|+-.=.-+.+.+.|++.
T Consensus       237 tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~  283 (344)
T KOG4532|consen  237 TPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRN  283 (344)
T ss_pred             cchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEccc
Confidence            22111  11235899999999998664  343333457889999874

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.44  E-value=4.7e-07  Score=79.61  Aligned_cols=152  Identities=17%  Similarity=0.243  Sum_probs=94.7

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEe-----CCCeEEEEEccCCceEEe
Q 007283          454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD-----VNREAIVWDRVSREVKLK  528 (609)
Q Consensus       454 ~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s-----~d~~v~iwd~~~~~~~~~  528 (609)
                      +.+.-++.++++..||.+.+++.+.......+....|.+. .+.++-..+.++.++.     .-+..+.|++........
T Consensus        96 ~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~  174 (319)
T KOG4714|consen   96 ACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIP  174 (319)
T ss_pred             cccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccccccc
Confidence            3344466789999999999998764211111111112211 1122223344444432     122345565543222111


Q ss_pred             eecCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc--CCCeEEEEeCCCcEEEEE
Q 007283          529 NMLYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT--DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       529 ~~~~h~~~i~~l~~s~d~~-~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~~l~s~s~D~~i~~W~  605 (609)
                       .......|++++-+|..+ .+++|+.||.+-+||++... -...++.+|...||.+.|.  +.+.|+++++||++.-|+
T Consensus       175 -~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wd  252 (319)
T KOG4714|consen  175 -SKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-MPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWD  252 (319)
T ss_pred             -cccccccchhhhCCcccccEEEEecCCCeEEEEEccccc-chHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEc
Confidence             111234599999999654 66789999999999987532 2245567899999999998  567899999999999999


Q ss_pred             ccC
Q 007283          606 LTP  608 (609)
Q Consensus       606 ~~~  608 (609)
                      .++
T Consensus       253 as~  255 (319)
T KOG4714|consen  253 AST  255 (319)
T ss_pred             CCC
Confidence            763

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.42  E-value=1.1e-05  Score=71.18  Aligned_cols=91  Identities=20%  Similarity=0.253  Sum_probs=67.3

Q ss_pred             EEEeCCCCceeeeccCcccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC-CCCeE
Q 007283          171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP-DGKQV  248 (609)
Q Consensus       171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l  248 (609)
                      +.|+..+.+....-+.-...|++++-+|.-+ .+++|+.||.+-+||.+.......+  ...|+.++..+.|+| ++..|
T Consensus       162 ~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~--l~ahk~~i~eV~FHpk~p~~L  239 (319)
T KOG4714|consen  162 YANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSL--LKAHKAEIWEVHFHPKNPEHL  239 (319)
T ss_pred             eeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHH--HHHhhhhhhheeccCCCchhe
Confidence            4555554443322222233488898888755 6778889999999999877543333  357999999999999 56799


Q ss_pred             EEEeCCCcEEEeecc
Q 007283          249 LTASADKSAKVWDIS  263 (609)
Q Consensus       249 ~s~s~d~~i~iwd~~  263 (609)
                      ++++.||.+.-||.+
T Consensus       240 ft~sedGslw~wdas  254 (319)
T KOG4714|consen  240 FTCSEDGSLWHWDAS  254 (319)
T ss_pred             eEecCCCcEEEEcCC
Confidence            999999999999975

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.41  E-value=7.8e-06  Score=81.88  Aligned_cols=180  Identities=17%  Similarity=0.220  Sum_probs=107.6

Q ss_pred             EEeecCCCCeEEEe----CC-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEE--cCCCCcee
Q 007283           21 LISGHPKSNSILYT----NG-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIW--GAHNDHVL   92 (609)
Q Consensus        21 ~~~~~~~~~~l~~~----~~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vW--d~~~~~~~   92 (609)
                      .-.++|++..|+|-    .+ ..++++++.+++...... -.+.-...+|||||++|| +...||...||  |+.++.  
T Consensus       197 ~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~--  273 (425)
T COG0823         197 TPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKN--  273 (425)
T ss_pred             ccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCc--
Confidence            45688888888775    23 469999998887755443 344566789999999987 66678877666  554443  


Q ss_pred             eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-eEEEecCCccEEEEEEeeCCCeEEEEecCCCe--
Q 007283           93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL--  169 (609)
Q Consensus        93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~--  169 (609)
                      ...+....+.-..-.|+|||++++.+.|..+...+.+..++.... ..++.+-...  .-.++|+|..++.....++.  
T Consensus       274 ~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~  351 (425)
T COG0823         274 LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWD  351 (425)
T ss_pred             ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCc--CccCCCCCCEEEEEeccCCcee
Confidence            223444445555889999999999999888776655555554432 2223322222  55778999864444432333  


Q ss_pred             EEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEE
Q 007283          170 VNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       170 i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~  206 (609)
                      +...+..+......+ .+......-.+.|+|..+...
T Consensus       352 i~~~~~~~~~~~~~l-t~~~~~e~ps~~~ng~~i~~~  387 (425)
T COG0823         352 IDKNDLASGGKIRIL-TSTYLNESPSWAPNGRMIMFS  387 (425)
T ss_pred             eEEeccCCCCcEEEc-cccccCCCCCcCCCCceEEEe
Confidence            444444332211111 112222233456666655443

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.38  E-value=0.00042  Score=62.81  Aligned_cols=148  Identities=15%  Similarity=0.216  Sum_probs=78.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCC--ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceE
Q 007283          194 VRFSPDGSKFISVSSDKKGIIYDGKTA--DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLK  271 (609)
Q Consensus       194 l~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~  271 (609)
                      ++.+.+|+.||. -.|..|.|=..+..  ..+......+...-.=..++||||+.+||.+...|+|+++|+..    ...
T Consensus         3 ~~~~~~Gk~lAi-~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g----~~l   77 (282)
T PF15492_consen    3 LALSSDGKLLAI-LQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG----SEL   77 (282)
T ss_pred             eeecCCCcEEEE-EeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc----cee
Confidence            566788886664 45666655432221  01111111112233457899999999999999999999999863    222


Q ss_pred             EEeccCC--CCCccceEEEEEEc--------CCeEEEEEcCCcEEEEeCCCC----CCCcee--eeC-CCCCeEEEEEec
Q 007283          272 KTLTPSG--SGGVDDMLVGCLWQ--------NDFLVIVSLGGTISIFSANDL----EKSPLQ--LSG-HMKNVTALTVLN  334 (609)
Q Consensus       272 ~~~~~~~--~~~~~~~~~~~~~~--------~~~~~~~~~~g~i~~~~~~~~----~~~~~~--~~~-h~~~v~~~~~~~  334 (609)
                      -.+.+..  .+.....+.+..+-        ...+++....|.++-|.+...    -...+.  +.. +...|.++.+++
T Consensus        78 f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p  157 (282)
T PF15492_consen   78 FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHP  157 (282)
T ss_pred             EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcC
Confidence            2222111  11222222222221        114566677777777764321    111222  222 466788888876


Q ss_pred             CCCCEEEEEecC
Q 007283          335 IDPKVILSSSYD  346 (609)
Q Consensus       335 ~~~~~~~t~s~d  346 (609)
                      ...-+++.|...
T Consensus       158 ~h~LLlVgG~~~  169 (282)
T PF15492_consen  158 KHRLLLVGGCEQ  169 (282)
T ss_pred             CCCEEEEeccCC
Confidence            554444444433

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.29  E-value=4.8e-05  Score=68.92  Aligned_cols=157  Identities=12%  Similarity=0.228  Sum_probs=102.1

Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe-eeeeEEEecC-----CCceEEEEECCC-CCEEEEEeCCCeEEEEE
Q 007283          447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT-LTEEAVLEKH-----RGAVSVIRYSPD-VSMFASGDVNREAIVWD  519 (609)
Q Consensus       447 ~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~-~~~~~~~~~h-----~~~i~~v~~s~~-~~~l~s~s~d~~v~iwd  519 (609)
                      ..-+.++.+..|.+.++++ .|-.|.+|++.-.. .....-.+.|     ..-|++-.|+|. ...+.-.+..|+|++-|
T Consensus       172 ~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D  250 (460)
T COG5170         172 PYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND  250 (460)
T ss_pred             eeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence            3457888899888887775 57889999875221 1112223344     245788899987 45677778899999999


Q ss_pred             ccCCceEEe-----e----------ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccc-------
Q 007283          520 RVSREVKLK-----N----------MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-------  577 (609)
Q Consensus       520 ~~~~~~~~~-----~----------~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h-------  577 (609)
                      ++.......     .          +..-...|..+.|+|+|+++++-+. .+|++||+.-.+.....+ .-|       
T Consensus       251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi-~~h~~l~~~l  328 (460)
T COG5170         251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTI-PMHCDLMDEL  328 (460)
T ss_pred             hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceee-chHHHHHHHH
Confidence            764322110     0          0112346889999999999987655 579999986433222222 112       


Q ss_pred             -----cCCe---EEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          578 -----LGGV---YGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       578 -----~~~v---~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                           ...|   ..+.|| |+..++|||.....-++..
T Consensus       329 ~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         329 NDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             HhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence                 1233   347788 8888889887777666653

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.28  E-value=4e-05  Score=76.84  Aligned_cols=194  Identities=17%  Similarity=0.177  Sum_probs=121.3

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEe--CC--CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283           52 IYGEHAYPATVARFSPNGEWIASAD--VS--GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV  127 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~--~d--~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  127 (609)
                      .+..-...+...+|+|+++.++-.+  ..  ..+.++++.+++...  .....+.-...+|||||++|+.+.+..+...+
T Consensus       187 ~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         187 KLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             EecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            3443345678889999999988543  22  358888998765321  22245566788999999999999877766666


Q ss_pred             EEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eCCCCceee-eccCcccceEEEEEcCCCCEEE
Q 007283          128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFKL-SHRGHSNFVNCVRFSPDGSKFI  204 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~  204 (609)
                      .+.+.+...... +..-.+.-..=.|+|+|..++.+.+..+.-.+|  +.+.....+ ++.+-..  ..-.++|||++|+
T Consensus       265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~--~~p~~SpdG~~i~  341 (425)
T COG0823         265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGN--SNPVWSPDGDKIV  341 (425)
T ss_pred             EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCC--cCccCCCCCCEEE
Confidence            666665544222 332222223557899999877777777755554  544443322 2222222  2667999999998


Q ss_pred             EEeCC-Cc--EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283          205 SVSSD-KK--GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD  254 (609)
Q Consensus       205 s~~~d-~~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d  254 (609)
                      ..+.. |.  |.+.|..++..+..+    .+.......+|.|+++++...+..
T Consensus       342 ~~~~~~g~~~i~~~~~~~~~~~~~l----t~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         342 FESSSGGQWDIDKNDLASGGKIRIL----TSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             EEeccCCceeeEEeccCCCCcEEEc----cccccCCCCCcCCCCceEEEeccC
Confidence            87743 33  666666655543333    233344567788888877766543

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.25  E-value=3.4e-06  Score=77.34  Aligned_cols=139  Identities=16%  Similarity=0.250  Sum_probs=101.4

Q ss_pred             EEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC----ceEEeeecCCCCceEE
Q 007283          464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR----EVKLKNMLYHTARINC  539 (609)
Q Consensus       464 ~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~----~~~~~~~~~h~~~i~~  539 (609)
                      +.+-+..+.+-++.++...   .+. -++.|.++.|...+.++..|+..|.|...|+..+    .... ....|...|++
T Consensus       229 s~G~sqqv~L~nvetg~~q---sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~Ssvts  303 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGHQQ---SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDSSVTS  303 (425)
T ss_pred             cccccceeEEEEeeccccc---ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCcchhh
Confidence            3345666778888766432   222 4567889999988999999999999999998754    2222 34569999999


Q ss_pred             EEECC-CCcEEEEEeCCCeEEEEEcCCCCC-cceeEeccccCCeEEEEEc---CCCeEEEEeCCCcEEEEEcc
Q 007283          540 LAWSP-NNSMVATGSLDTCVIIYEIDKPAS-SRMTIKGAHLGGVYGLAFT---DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       540 l~~s~-d~~~l~s~s~D~~v~vw~~~~~~~-~~~~~~~~h~~~v~~~~~s---~~~~l~s~s~D~~i~~W~~~  607 (609)
                      +..-. ++++|.+++.+|+|++||..--+. .-.....||...-.-+-+.   .+..++++|+|...++|.++
T Consensus       304 lq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~  376 (425)
T KOG2695|consen  304 LQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLD  376 (425)
T ss_pred             hhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecc
Confidence            98876 788999999999999999863221 1134456776544444443   34578899999999999986

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.23  E-value=0.0018  Score=60.96  Aligned_cols=200  Identities=19%  Similarity=0.199  Sum_probs=120.2

Q ss_pred             EEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEEC-CCCCEEEEEECCCCcceEEEEEcCCCCee
Q 007283           61 TVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWS-PDGLRIVACGDGKGKSLVRAFMWDSGTNV  138 (609)
Q Consensus        61 ~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~s-pdg~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (609)
                      ..++|.+ +|+++.+--..+.|..|+..+++...  +. ... ...+++. ++|..+++... .    +.++++++++..
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--~~-~~~-~~G~~~~~~~g~l~v~~~~-~----~~~~d~~~g~~~   73 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--ID-LPG-PNGMAFDRPDGRLYVADSG-G----IAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--EE-SSS-EEEEEEECTTSEEEEEETT-C----EEEEETTTTEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--Ee-cCC-CceEEEEccCCEEEEEEcC-c----eEEEecCCCcEE
Confidence            3578888 77777777778999999988765322  22 222 6667777 77765555432 2    234466665332


Q ss_pred             --EEEe--c-CCccEEEEEEeeCCCeEEEEecCC--------CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEE-
Q 007283          139 --GEFD--G-HSRRVLSCAFKPSRPFRIATCGED--------FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI-  204 (609)
Q Consensus       139 --~~~~--~-h~~~v~~~~~~p~~~~~i~t~~~d--------~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~-  204 (609)
                        ....  . .....+.+++.|+|.. .++....        +.+..++.. ++..... ......+.++|+||++.|. 
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd~~G~l-y~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~-~~~~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVDPDGNL-YVTDSGGGGASGIDPGSVYRIDPD-GKVTVVA-DGLGFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE-TTS-E-EEEEECCBCTTCGGSEEEEEEETT-SEEEEEE-EEESSEEEEEEETTSSEEEE
T ss_pred             EEeeccCCCcccCCCceEEEcCCCCE-EEEecCCCccccccccceEEECCC-CeEEEEe-cCcccccceEECCcchheee
Confidence              2221  1 3456889999999984 4443322        345555555 4433332 2345578999999998665 


Q ss_pred             EEeCCCcEEEEeCCCCcc-cc---ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEecc
Q 007283          205 SVSSDKKGIIYDGKTADK-IG---ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTP  276 (609)
Q Consensus       205 s~~~d~~i~iwd~~~~~~-~~---~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  276 (609)
                      +-+..+.|..++...... +.   .+.....-.+..-.+++.++|++.++....+.|.+++.+    +++...+..
T Consensus       151 ~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~----G~~~~~i~~  222 (246)
T PF08450_consen  151 ADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD----GKLLREIEL  222 (246)
T ss_dssp             EETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT----SCEEEEEE-
T ss_pred             cccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC----ccEEEEEcC
Confidence            556677888888653221 11   111111112346789999999988888788999999975    555555543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.21  E-value=0.0039  Score=62.05  Aligned_cols=303  Identities=15%  Similarity=0.135  Sum_probs=143.1

Q ss_pred             cCCCCeEEEe----------CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeE
Q 007283           25 HPKSNSILYT----------NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKK   94 (609)
Q Consensus        25 ~~~~~~l~~~----------~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~   94 (609)
                      |||++.++..          ......|+|+++++....... ...+..+.|||+|++||-.. ++.|.+++..+++....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            4677765541          124778999998766553333 56788999999999999885 57899998877643322


Q ss_pred             EEeec----------------ccceeEEEECCCCCEEEEEECC-CCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCC
Q 007283           95 EFRVL----------------SGRIDDLQWSPDGLRIVACGDG-KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSR  157 (609)
Q Consensus        95 ~~~~~----------------~~~v~~~~~spdg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (609)
                      +..+.                -+.-.++-|||||++|+...-+ .....+.+........      ....+..+.+..-|
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YPk~G  152 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYPKAG  152 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--BTT
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccCCCC
Confidence            22220                0123678899999999986532 2222222222111100      01134455553222


Q ss_pred             CeEEEEecCCCeEEEEeCCCCceee-e----ccCcccceEEEEEcCCCCEEEEE--eCC---CcEEEEeCCCCccccccC
Q 007283          158 PFRIATCGEDFLVNFYEGPPFKFKL-S----HRGHSNFVNCVRFSPDGSKFISV--SSD---KKGIIYDGKTADKIGELS  227 (609)
Q Consensus       158 ~~~i~t~~~d~~i~~~~~~~~~~~~-~----~~~h~~~v~~l~~s~dg~~l~s~--~~d---~~i~iwd~~~~~~~~~~~  227 (609)
                      ... .    .-.+.+++...++... .    +..-...+..+.|++++..|+..  ..+   ..+.++|..++..-....
T Consensus       153 ~~n-p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~  227 (353)
T PF00930_consen  153 DPN-P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLE  227 (353)
T ss_dssp             S--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEE
T ss_pred             CcC-C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEE
Confidence            210 0    0124556766554421 1    12345678999999999844433  222   235566776654322111


Q ss_pred             c-CCCCccceEEEEEC-CCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE-EEEEc--
Q 007283          228 P-EDGHKGSVYAVSWS-PDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL-VIVSL--  301 (609)
Q Consensus       228 ~-~~~h~~~V~~l~~s-pd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--  301 (609)
                      . ..+--..-....|. +++. ++.....||.-+++-++..  +...+.++. +...+.. +......++.+ +++..  
T Consensus       228 e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~--~~~~~~lT~-G~~~V~~-i~~~d~~~~~iyf~a~~~~  303 (353)
T PF00930_consen  228 ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD--GGKPRQLTS-GDWEVTS-ILGWDEDNNRIYFTANGDN  303 (353)
T ss_dssp             EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT--SSEEEESS--SSS-EEE-EEEEECTSSEEEEEESSGG
T ss_pred             ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc--ccceecccc-Cceeecc-cceEcCCCCEEEEEecCCC
Confidence            1 01111122345554 6655 4444446776666554322  222333332 2212211 22222223433 33433  


Q ss_pred             CCcEEEEeCCCC-CCCceeeeCCCCCeEEEEEecCCCCEEEEEe
Q 007283          302 GGTISIFSANDL-EKSPLQLSGHMKNVTALTVLNIDPKVILSSS  344 (609)
Q Consensus       302 ~g~i~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s  344 (609)
                      ...-++|..+.. ......+.........+.+++....++.+++
T Consensus       304 p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  304 PGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             TTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             CCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            235566655433 3333333332222245566554444444544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.15  E-value=0.0015  Score=61.23  Aligned_cols=184  Identities=15%  Similarity=0.066  Sum_probs=115.6

Q ss_pred             EEeecCCCCeEEEeC-----C-CEEEEEeCCC-CccccccccCCCCcEEEEECCCCCEEEEEeC----------------
Q 007283           21 LISGHPKSNSILYTN-----G-RSVIILDLSN-PLQVSIYGEHAYPATVARFSPNGEWIASADV----------------   77 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~-----~-~~~~i~~~~~-~~~~~~~~~h~~~v~~~~~sp~g~~las~~~----------------   77 (609)
                      +-.|+|||++|+.+.     + +.|-|||... -..+..+..|.=.==.+.+.|||+.|+.+..                
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            677999999888762     2 5788999983 3334445444322224668999987776421                


Q ss_pred             --CCcEEEEcCCCCceee-EEE--eecccceeEEEECCCCCEEEEEECCCCc--ceEEEEEcCCCCeeEEEe-------c
Q 007283           78 --SGTVRIWGAHNDHVLK-KEF--RVLSGRIDDLQWSPDGLRIVACGDGKGK--SLVRAFMWDSGTNVGEFD-------G  143 (609)
Q Consensus        78 --d~~i~vWd~~~~~~~~-~~~--~~~~~~v~~~~~spdg~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~-------~  143 (609)
                        +..+-+=|..+++.+. ..+  ..|.-.+..+++.+||..+++.......  ..-.+..++.+..+..+.       .
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~  214 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRR  214 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHh
Confidence              2244444566666433 234  3356689999999999888876532111  011133344443322222       2


Q ss_pred             CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283          144 HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS  207 (609)
Q Consensus       144 h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  207 (609)
                      -..++-++++++++..+.+|+...+.+.+||..++++.....  ...+..++-.+++ ++++.+
T Consensus       215 l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~--l~D~cGva~~~~~-f~~ssG  275 (305)
T PF07433_consen  215 LNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP--LPDACGVAPTDDG-FLVSSG  275 (305)
T ss_pred             hCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc--cCceeeeeecCCc-eEEeCC
Confidence            346799999999999888999999999999998887764432  2335556665665 455443

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.06  E-value=7.8e-05  Score=74.21  Aligned_cols=90  Identities=14%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             EEEecCCeeeeeE-EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEE
Q 007283          473 VYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVAT  551 (609)
Q Consensus       473 iw~~~~~~~~~~~-~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s  551 (609)
                      +|++..+++.... +.-.....|.|.+++|+...++.|+.||++++||...+..   ....+.-..+.++|+|+|..+++
T Consensus       240 iYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t---~~~ka~~~P~~iaWHp~gai~~V  316 (545)
T PF11768_consen  240 IYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT---LLAKAEFIPTLIAWHPDGAIFVV  316 (545)
T ss_pred             EEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee---eeeeecccceEEEEcCCCcEEEE
Confidence            4554444332222 2235778999999999999999999999999999755422   22234456789999999999999


Q ss_pred             EeCCCeEEEEEcCC
Q 007283          552 GSLDTCVIIYEIDK  565 (609)
Q Consensus       552 ~s~D~~v~vw~~~~  565 (609)
                      |+.-|.+.+||+..
T Consensus       317 ~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  317 GSEQGELQCFDMAL  330 (545)
T ss_pred             EcCCceEEEEEeec
Confidence            99999999999864

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.06  E-value=0.0016  Score=64.82  Aligned_cols=233  Identities=15%  Similarity=0.149  Sum_probs=119.6

Q ss_pred             cCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccc-cccC----------------CCCcEEEEECCCCCEEEEEeCC
Q 007283           16 RGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSI-YGEH----------------AYPATVARFSPNGEWIASADVS   78 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-~~~h----------------~~~v~~~~~sp~g~~las~~~d   78 (609)
                      .+.......+|+|+.|+|..++.+.+.++.++...+. ..|-                -+.-..+.|||||++||....|
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            4566799999999999999999999999876644321 1120                1123567899999999975432


Q ss_pred             -Cc-----------------------------------EEEEcCCCCceeeEEEe----ecccceeEEEECCCCCEEEEE
Q 007283           79 -GT-----------------------------------VRIWGAHNDHVLKKEFR----VLSGRIDDLQWSPDGLRIVAC  118 (609)
Q Consensus        79 -~~-----------------------------------i~vWd~~~~~~~~~~~~----~~~~~v~~~~~spdg~~l~~~  118 (609)
                       ..                                   +.|+|+.+++.......    ....-+..+.|++|++.|+..
T Consensus       122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~  201 (353)
T PF00930_consen  122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ  201 (353)
T ss_dssp             -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred             CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence             21                                   22334443332111111    112236788999999855554


Q ss_pred             ECCCCcceEEE--EEcCCCCeeEEEec-CCccE---EEEEEe-eCCCeEEEEecCCCeEEEE--eCCCCceeeeccCccc
Q 007283          119 GDGKGKSLVRA--FMWDSGTNVGEFDG-HSRRV---LSCAFK-PSRPFRIATCGEDFLVNFY--EGPPFKFKLSHRGHSN  189 (609)
Q Consensus       119 ~~~~~~~~~~~--~~~~~~~~~~~~~~-h~~~v---~~~~~~-p~~~~~i~t~~~d~~i~~~--~~~~~~~~~~~~~h~~  189 (609)
                      --++......+  .+..++........ ....|   ....|. +++...+-....++--.+|  +...........| .-
T Consensus       202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~~lT~G-~~  280 (353)
T PF00930_consen  202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPRQLTSG-DW  280 (353)
T ss_dssp             EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEEESS-S-SS
T ss_pred             EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccceeccccC-ce
Confidence            43333333333  33334333222211 11111   234444 5555444444466654444  5544443322333 33


Q ss_pred             ce-EEEEEcCCCCEEE-EEeCCC----cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          190 FV-NCVRFSPDGSKFI-SVSSDK----KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       190 ~v-~~l~~s~dg~~l~-s~~~d~----~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      .| .-+.++++++.|. +|..+.    .+..-+...+..+..+....+.   -..+.|||++++++-..
T Consensus       281 ~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~---~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  281 EVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGD---HYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             -EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSST---TEEEEE-TTSSEEEEEE
T ss_pred             eecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCC---ceEEEECCCCCEEEEEE
Confidence            45 4478888877554 454422    3444455523334445432221   16899999999876543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.00052  Score=70.58  Aligned_cols=181  Identities=17%  Similarity=0.221  Sum_probs=111.7

Q ss_pred             EEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283          287 VGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE  366 (609)
Q Consensus       287 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~  366 (609)
                      .+|.....+++.++..|.+++++.+...   .....|...       +..+..++|||.||+|.+--+.+..        
T Consensus        43 s~~av~~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~--------  104 (846)
T KOG2066|consen   43 SCCAVHDKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDD--------  104 (846)
T ss_pred             HHHHhhcceeeeccccceEEEEecCCcc---ccccccccc-------ccCCceEEEecCCCcEEEeeccCCc--------
Confidence            3445567789999999999999865432   222233322       3456899999999998765321110        


Q ss_pred             ccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEecc
Q 007283          367 NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINL  446 (609)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (609)
                                           .                                                    ......
T Consensus       105 ---------------------~----------------------------------------------------~~~~df  111 (846)
T KOG2066|consen  105 ---------------------E----------------------------------------------------ITQYDF  111 (846)
T ss_pred             ---------------------c----------------------------------------------------ceeEec
Confidence                                 0                                                    001112


Q ss_pred             CCceeEEEEcCC-----CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283          447 RFPVTASAIAPD-----GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV  521 (609)
Q Consensus       447 ~~~~~~~~~sp~-----g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~  521 (609)
                      +-++.+++++||     .+.+++|+.-| +.++.-.--......++..-.|+|.++.|  .|.++|=++.+| +++||+.
T Consensus       112 ~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~  187 (846)
T KOG2066|consen  112 KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTP  187 (846)
T ss_pred             CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEecCCC-cEEEecc
Confidence            235677788887     45688998888 77775321011112245666789999988  688888887776 8999987


Q ss_pred             CCceEEeeecCC-----CCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          522 SREVKLKNMLYH-----TARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       522 ~~~~~~~~~~~h-----~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      .++........+     ...--.+.|.++.+ |+.|-.| +|+|..+.
T Consensus       188 ~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d-~v~i~~I~  233 (846)
T KOG2066|consen  188 TRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGD-SVKICSIK  233 (846)
T ss_pred             ccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCC-eEEEEEEe
Confidence            665432211111     11234578876655 5667666 58888876

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.99  E-value=0.016  Score=62.90  Aligned_cols=200  Identities=12%  Similarity=0.216  Sum_probs=121.3

Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC--C
Q 007283           58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS--G  135 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~--~  135 (609)
                      +.|..+.|.-++.-|.-+..+|+|.+=|.++....  ....-...|.+++||||.+.++.+...... ++-..+|+.  .
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS~Dee~l~liT~~~tl-l~mT~~f~~i~E  145 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWSPDEELLALITGRQTL-LFMTKDFEPIAE  145 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEccccccee--eeeeccCceEEEeecCCCcEEEEEeCCcEE-EEEeccccchhc
Confidence            57899999999999988889999999888775421  122335689999999999988877643321 111122221  0


Q ss_pred             Cee-------------------EEEecC---------------------CccEEEEEEeeCCCeEEEEe----cCC-CeE
Q 007283          136 TNV-------------------GEFDGH---------------------SRRVLSCAFKPSRPFRIATC----GED-FLV  170 (609)
Q Consensus       136 ~~~-------------------~~~~~h---------------------~~~v~~~~~~p~~~~~i~t~----~~d-~~i  170 (609)
                      +.+                   -.|.|.                     .+.=+++.|--||.+ +|+.    ..+ +.+
T Consensus       146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~-fAVs~~~~~~~~Rki  224 (1265)
T KOG1920|consen  146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEY-FAVSFVESETGTRKI  224 (1265)
T ss_pred             cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcE-EEEEEEeccCCceeE
Confidence            001                   012111                     011234677777775 4441    334 789


Q ss_pred             EEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCccccccCc-CCCCccceEEEEECCCCC
Q 007283          171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS---SDKKGIIYDGKTADKIGELSP-EDGHKGSVYAVSWSPDGK  246 (609)
Q Consensus       171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---~d~~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~spd~~  246 (609)
                      ++||-+ +.+...-....+.=.+++|-|.|.++++-.   .|+.|.++.- +|-.-..+.. ...-...|..++|..++.
T Consensus       225 rV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  225 RVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecCCCC
Confidence            999866 333222222233346889999999998864   3557888853 3322111110 111223489999999999


Q ss_pred             eEEE---EeCCCcEEEeecc
Q 007283          247 QVLT---ASADKSAKVWDIS  263 (609)
Q Consensus       247 ~l~s---~s~d~~i~iwd~~  263 (609)
                      .|+.   ......|++|-+.
T Consensus       303 iLAv~~~~~e~~~v~lwt~~  322 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTG  322 (1265)
T ss_pred             ceeeeecccccceEEEEEec
Confidence            9888   4444559999765

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00027  Score=67.59  Aligned_cols=207  Identities=16%  Similarity=0.168  Sum_probs=132.1

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeC-CCcEEEEcCCCCcee-eEEEeecccceeEEEECC-CCCEEEEEECCCCcceE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADV-SGTVRIWGAHNDHVL-KKEFRVLSGRIDDLQWSP-DGLRIVACGDGKGKSLV  127 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~-d~~i~vWd~~~~~~~-~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~  127 (609)
                      ..+..|-..|..++.|-+|.++.|.+. |+.+|++|+++-... .-.+....+.+.. .-+| |-.-+++++.-+..   
T Consensus        47 KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~w-v~skGd~~s~IAVs~~~sg---  122 (558)
T KOG0882|consen   47 KHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEW-VTSKGDKISLIAVSLFKSG---  122 (558)
T ss_pred             hhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEE-ecCCCCeeeeEEeecccCC---
Confidence            446788889999999999999999776 999999999863211 0111122222221 1222 23345555543322   


Q ss_pred             EEEEcCC--C--CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-Ccee-----ee---------ccCcc
Q 007283          128 RAFMWDS--G--TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFK-----LS---------HRGHS  188 (609)
Q Consensus       128 ~~~~~~~--~--~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~-----~~---------~~~h~  188 (609)
                      .+..+|.  .  .....-+-|..+|..+-+.|.+.. +++....|.|..|..+. ++..     ..         +....
T Consensus       123 ~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds-~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K  201 (558)
T KOG0882|consen  123 KIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDS-AVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK  201 (558)
T ss_pred             CcEEECCcCCcCccceecccccCceEEEEeeccccc-eeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence            2334442  1  122334578999999999998874 78888889999998762 2211     11         12234


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC-----------------------------CCCcc-ceEE
Q 007283          189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE-----------------------------DGHKG-SVYA  238 (609)
Q Consensus       189 ~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------------------------~~h~~-~V~~  238 (609)
                      ....++.|+|+|..+.+-+.|..|++++.++++.+..+-..                             ..|.. .-+.
T Consensus       202 t~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~  281 (558)
T KOG0882|consen  202 TEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTN  281 (558)
T ss_pred             cCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccce
Confidence            56789999999999999999999999999988866433210                             01111 1245


Q ss_pred             EEECCCCCeEEEEeCCCcEEEeecc
Q 007283          239 VSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       239 l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +.|...+.+|+-++.-| |++.++.
T Consensus       282 ~~fdes~~flly~t~~g-ikvin~~  305 (558)
T KOG0882|consen  282 AVFDESGNFLLYGTILG-IKVINLD  305 (558)
T ss_pred             eEEcCCCCEEEeeccee-EEEEEee
Confidence            66777777777776543 6777765

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.0019  Score=67.20  Aligned_cols=131  Identities=13%  Similarity=0.193  Sum_probs=87.2

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEE--ecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283          448 FPVTASAIAPDGSEAIIGSQDGKLRVYS--IRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV  525 (609)
Q Consensus       448 ~~~~~~~~sp~g~~l~~gs~dg~i~iw~--~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~  525 (609)
                      .|.++++++.+-+.+|+|-.+|.|..+.  +..+..........-.++|+.+++..+++.++=+.....|.+|.+.++..
T Consensus       126 ~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p  205 (933)
T KOG2114|consen  126 SPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP  205 (933)
T ss_pred             CcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc
Confidence            5678889999999999999999999884  21111111122234467999999999988733333456789999876653


Q ss_pred             EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCC
Q 007283          526 KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGG  580 (609)
Q Consensus       526 ~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~  580 (609)
                      ..+.+..|....+|..+++-...++.++ +.-|.+|+.+..+ ...++..||...
T Consensus       206 ~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~-~cfaf~~g~kk~  258 (933)
T KOG2114|consen  206 SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG-PCFAFEVGEKKE  258 (933)
T ss_pred             ceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcc-eeeeecCCCeEE
Confidence            4444667888899999997666455444 3458899877533 223443355443

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=97.85  E-value=0.00011  Score=67.84  Aligned_cols=146  Identities=14%  Similarity=0.157  Sum_probs=103.1

Q ss_pred             CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEE
Q 007283           37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIV  116 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  116 (609)
                      ..+.+.+++++.+.. |. -+..|.+..|...++++..|...|.|-+.|+...      .++                  
T Consensus       234 qqv~L~nvetg~~qs-f~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~r------nqG------------------  287 (425)
T KOG2695|consen  234 QQVLLTNVETGHQQS-FQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCR------NQG------------------  287 (425)
T ss_pred             ceeEEEEeecccccc-cc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeec------ccC------------------
Confidence            577888888888765 33 4677999999999999999999999999987542      111                  


Q ss_pred             EEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEee-CCCeEEEEecCCCeEEEEeCCCCce---eeeccCcccceE
Q 007283          117 ACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKP-SRPFRIATCGEDFLVNFYEGPPFKF---KLSHRGHSNFVN  192 (609)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~i~t~~~d~~i~~~~~~~~~~---~~~~~~h~~~v~  192 (609)
                           +.....++             -|...|+++..-. +++ .+.+.+-+++|++||.+..++   +..+.||.+.-.
T Consensus       288 -----~~~~a~rl-------------yh~Ssvtslq~Lq~s~q-~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a  348 (425)
T KOG2695|consen  288 -----NGWCAQRL-------------YHDSSVTSLQILQFSQQ-KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSA  348 (425)
T ss_pred             -----CCcceEEE-------------EcCcchhhhhhhccccc-eEeeccCcCceeEeeehhhhcccceeeeeccccccc
Confidence                 00000111             2444555554444 333 477778999999999887666   778889976443


Q ss_pred             EEEE--cCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007283          193 CVRF--SPDGSKFISVSSDKKGIIYDGKTADKIGELS  227 (609)
Q Consensus       193 ~l~~--s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~  227 (609)
                      -+-+  .+....++++++|...+||..+.++.+.++.
T Consensus       349 ~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip  385 (425)
T KOG2695|consen  349 YLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP  385 (425)
T ss_pred             ccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence            3333  4556688889999999999999998877664

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.84  E-value=0.0002  Score=71.47  Aligned_cols=76  Identities=24%  Similarity=0.397  Sum_probs=62.9

Q ss_pred             EeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283          443 TINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       443 ~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~  522 (609)
                      .+..+..+.+++.+|+...++.|+.||.|.+||...+.-    .+....-.++.++|+|+|..+++|+..|.+.+||..-
T Consensus       255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            345566789999999999999999999999999865532    1223445678999999999999999999999999653

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00021  Score=68.32  Aligned_cols=213  Identities=18%  Similarity=0.154  Sum_probs=133.3

Q ss_pred             cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--eeeEEEeecccceeEEEECCCCCEEEEEEC-CCCcceEEEEE
Q 007283           55 EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH--VLKKEFRVLSGRIDDLQWSPDGLRIVACGD-GKGKSLVRAFM  131 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-~~~~~~~~~~~  131 (609)
                      -|++.|+.+.-+ --+++.+++.||.++.|.-..-.  .....++.|...|..++-|-||..+.++++ +.   -+++++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dh---s~KvfD   82 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDH---SVKVFD   82 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCccc---ceeEEE
Confidence            388888877543 56789999999999999754311  122346777888999999999976666555 33   345555


Q ss_pred             cCCCCeeEEEe-cCCccEEEEEEeeCCCe-EEEEe-cCCCeEEEEeCCCCc--eeeeccCcccceEEEEEcCCCCEEEEE
Q 007283          132 WDSGTNVGEFD-GHSRRVLSCAFKPSRPF-RIATC-GEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       132 ~~~~~~~~~~~-~h~~~v~~~~~~p~~~~-~i~t~-~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~  206 (609)
                      ......+.-++ ..-.....+..+|.+.. .+|.. -.++.+.++|....-  ......-|..+|.++.++|-+..+++.
T Consensus        83 vEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSi  162 (558)
T KOG0882|consen   83 VENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSI  162 (558)
T ss_pred             eeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeec
Confidence            54322211111 00111112222333221 13333 345678888854322  222234589999999999999988888


Q ss_pred             eCCCcEEEEeCCC------CccccccC------cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEe
Q 007283          207 SSDKKGIIYDGKT------ADKIGELS------PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       207 ~~d~~i~iwd~~~------~~~~~~~~------~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  274 (609)
                      ...|.|.-|....      .+....+.      .....+....++.|+|++..+.+-+.|..||+++...   +++.+.+
T Consensus       163 D~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~Kt---Gklvqei  239 (558)
T KOG0882|consen  163 DISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKT---GKLVQEI  239 (558)
T ss_pred             cccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEecc---chhhhhh
Confidence            8889999997652      11111111      0112345678999999999999999999999999873   4444433

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.80  E-value=0.0017  Score=66.93  Aligned_cols=146  Identities=16%  Similarity=0.244  Sum_probs=91.7

Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCccccccCcCC
Q 007283          156 SRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD-----GSKFISVSSDKKGIIYDGKTADKIGELSPED  230 (609)
Q Consensus       156 ~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  230 (609)
                      .|.+ +++|+.||++.+-..-+.+....+ .-..++.+++++||     .+++++|+..| +.++.-.--...... ...
T Consensus        82 ~Gey-~asCS~DGkv~I~sl~~~~~~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v-~l~  157 (846)
T KOG2066|consen   82 EGEY-VASCSDDGKVVIGSLFTDDEITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSV-VLS  157 (846)
T ss_pred             CCce-EEEecCCCcEEEeeccCCccceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccce-eee
Confidence            4654 999999999888754443332222 12467999999998     55789999888 766642111111111 112


Q ss_pred             CCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCC-CCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG-SGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       231 ~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      .-.|.|.++.|.  |.++|.++.+| |++||+..   ++.+..+.+.. ....+.......|.++..++.+-..+|++..
T Consensus       158 ~~eG~I~~i~W~--g~lIAWand~G-v~vyd~~~---~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVIGW~d~v~i~~  231 (846)
T KOG2066|consen  158 EGEGPIHSIKWR--GNLIAWANDDG-VKVYDTPT---RQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVIGWGDSVKICS  231 (846)
T ss_pred             cCccceEEEEec--CcEEEEecCCC-cEEEeccc---cceeeccCCCCCCCCcccCCCceEecCCCeEEEecCCeEEEEE
Confidence            346889999995  78999998665 89999864   22222222211 1111112233568888777788888999988


Q ss_pred             CC
Q 007283          310 AN  311 (609)
Q Consensus       310 ~~  311 (609)
                      +.
T Consensus       232 I~  233 (846)
T KOG2066|consen  232 IK  233 (846)
T ss_pred             Ee
Confidence            76

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.79  E-value=0.0083  Score=62.61  Aligned_cols=194  Identities=15%  Similarity=0.153  Sum_probs=124.7

Q ss_pred             EECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCC-CEEEEEECCCC-cc-eEEEEEcCC---CC-
Q 007283           64 RFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDG-LRIVACGDGKG-KS-LVRAFMWDS---GT-  136 (609)
Q Consensus        64 ~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~-~~-~~~~~~~~~---~~-  136 (609)
                      +++++|..+|-|+++|.|-+.+  ..-.+.+.+..+...+...-|.-++ ..|+++|.+.. .. .+++|+.+.   +. 
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            4689999999999999775554  3333334566666663333344444 68888886655 44 666776653   12 


Q ss_pred             --eeEE--Eec-----CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee--ee--ccCcccceEEEEEcCCCCEE
Q 007283          137 --NVGE--FDG-----HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK--LS--HRGHSNFVNCVRFSPDGSKF  203 (609)
Q Consensus       137 --~~~~--~~~-----h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~--~~--~~~h~~~v~~l~~s~dg~~l  203 (609)
                        ++++  +.+     ...++.+++.+.+-. .+|.|-.+|.|..+.+...+-.  +.  ...-..+|+.+.|..+++.+
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~-~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLK-TIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEcccc-EEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence              2211  112     245688889988855 5888999999999865432111  11  12235689999999999875


Q ss_pred             EEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          204 ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       204 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +.+..-..|.+|...... . .......|...++|-.|++-...+++++ +.-+.+|+.+
T Consensus       187 lFv~Tt~~V~~y~l~gr~-p-~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd  243 (933)
T KOG2114|consen  187 LFVATTEQVMLYSLSGRT-P-SLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSD  243 (933)
T ss_pred             EEEEecceeEEEEecCCC-c-ceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCC
Confidence            566666778899876333 1 1111346777899999988666455554 4579999876

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.72  E-value=0.012  Score=54.99  Aligned_cols=213  Identities=17%  Similarity=0.104  Sum_probs=114.8

Q ss_pred             CEEEEEeCCCCccccccccCCCCcEEEE--ECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCE
Q 007283           37 RSVIILDLSNPLQVSIYGEHAYPATVAR--FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR  114 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~--~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~  114 (609)
                      +.+..+|..+++.+-...- ........  ..+++.++..++.++.+..||..+++.+. .+.. .+.+.......++..
T Consensus         3 g~l~~~d~~tG~~~W~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W-~~~~-~~~~~~~~~~~~~~v   79 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSYDL-GPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLW-RFDL-PGPISGAPVVDGGRV   79 (238)
T ss_dssp             SEEEEEETTTTEEEEEEEC-SSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEE-EEEC-SSCGGSGEEEETTEE
T ss_pred             CEEEEEECCCCCEEEEEEC-CCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEE-Eeec-cccccceeeeccccc
Confidence            3566677766665433321 11111111  33456667767899999999998887543 3332 333222222223433


Q ss_pred             EEEEECCCCcceEEEEEcCCCCeeEEE-ecCC---ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccc
Q 007283          115 IVACGDGKGKSLVRAFMWDSGTNVGEF-DGHS---RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNF  190 (609)
Q Consensus       115 l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~---~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~  190 (609)
                      ++...++    .+..++-.+++.+... ....   ...........+.. ++.+..++.+..+|..+++..-........
T Consensus        80 ~v~~~~~----~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   80 YVGTSDG----SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDR-LYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             EEEETTS----EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTE-EEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             cccccee----eeEecccCCcceeeeeccccccccccccccCceEecCE-EEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            3333222    3445555577777663 3221   11222233333543 666666888999998888776554332211


Q ss_pred             ----------eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283          191 ----------VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW  260 (609)
Q Consensus       191 ----------v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw  260 (609)
                                +..-....++ .+..++.++.+..+|..+++.+.... .    ..+..+ ..+++..|+.++.++++..|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~----~~~~~~-~~~~~~~l~~~~~~~~l~~~  227 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-I----SGIYSL-PSVDGGTLYVTSSDGRLYAL  227 (238)
T ss_dssp             SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-S----S-ECEC-EECCCTEEEEEETTTEEEEE
T ss_pred             CCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-C----CCccCC-ceeeCCEEEEEeCCCEEEEE
Confidence                      1222233344 66667777754444999988554322 1    112221 34667788888899999999


Q ss_pred             eccc
Q 007283          261 DISE  264 (609)
Q Consensus       261 d~~~  264 (609)
                      |++.
T Consensus       228 d~~t  231 (238)
T PF13360_consen  228 DLKT  231 (238)
T ss_dssp             ETTT
T ss_pred             ECCC
Confidence            9873

...

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.70  E-value=0.025  Score=52.32  Aligned_cols=182  Identities=14%  Similarity=0.178  Sum_probs=105.2

Q ss_pred             eeEEeecCCCCeEEEeCC--CEEEEEeCCCCcccccc--ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--ee
Q 007283           19 GILISGHPKSNSILYTNG--RSVIILDLSNPLQVSIY--GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH--VL   92 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~--~~~~i~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~--~~   92 (609)
                      .-.|+..|+.+.|+...+  ..++-+++. ++.++.+  .+ -+....+++..+|+|+++-..++++.+.++....  ..
T Consensus        24 ~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~  101 (248)
T PF06977_consen   24 LSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLD  101 (248)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--
T ss_pred             ccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccc
Confidence            558999999888877644  567777764 4554443  34 3568899999999999988889999888884321  11


Q ss_pred             e---EEEe-----ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC---CCeeE--EE------ecCCccEEEEEE
Q 007283           93 K---KEFR-----VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS---GTNVG--EF------DGHSRRVLSCAF  153 (609)
Q Consensus        93 ~---~~~~-----~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~---~~~~~--~~------~~h~~~v~~~~~  153 (609)
                      .   ..+.     ..+..+..++|.|.+++|+++...+..   +++.++.   ...+.  ..      ......+.++++
T Consensus       102 ~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~  178 (248)
T PF06977_consen  102 RADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPK---RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSY  178 (248)
T ss_dssp             EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSE---EEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEE
T ss_pred             hhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCCh---hhEEEccccCccceeeccccccccccceeccccceEE
Confidence            1   1121     124568999999999888888765543   3455543   21111  11      123356789999


Q ss_pred             eeCCCeEEEEecCCCeEEEEeCCCCceee--eccC--c-----ccceEEEEEcCCCCEEEEE
Q 007283          154 KPSRPFRIATCGEDFLVNFYEGPPFKFKL--SHRG--H-----SNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       154 ~p~~~~~i~t~~~d~~i~~~~~~~~~~~~--~~~~--h-----~~~v~~l~~s~dg~~l~s~  206 (609)
                      +|.....++-......+...| ..++...  .+..  |     -.+...|+|.++|++.++.
T Consensus       179 ~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  179 DPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             ETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             cCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            998877788888888888888 3344322  2222  1     2457889999999765543

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.69  E-value=0.009  Score=64.81  Aligned_cols=201  Identities=18%  Similarity=0.191  Sum_probs=115.9

Q ss_pred             CceeEEeecCCCCeEE-EeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcC----CCCce
Q 007283           17 GRGILISGHPKSNSIL-YTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGA----HNDHV   91 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~-~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~----~~~~~   91 (609)
                      +.-+.+.+.-+.+.|+ ...++.+++.|.++... -..+.=.+.|.+++||||++++|-...++++-+=+.    -..+.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~-eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL-EIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccce-eeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            3444666777776654 44556777777766443 223333567999999999999998877777644322    11111


Q ss_pred             e------------------eEEEeeccc---------------------ceeEEEECCCCCEEEEEEC--CCCcceEEEE
Q 007283           92 L------------------KKEFRVLSG---------------------RIDDLQWSPDGLRIVACGD--GKGKSLVRAF  130 (609)
Q Consensus        92 ~------------------~~~~~~~~~---------------------~v~~~~~spdg~~l~~~~~--~~~~~~~~~~  130 (609)
                      +                  ..+|++..+                     .-..++|.-||+++++..-  ..+...+++ 
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV-  226 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRV-  226 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEE-
Confidence            1                  123432211                     1134899999998887541  111123444 


Q ss_pred             EcCCCCeeEEEecC-CccEEEEEEeeCCCeEEEEe---cCCCeEEEEeC---CCCceeeeccCcccceEEEEEcCCCCEE
Q 007283          131 MWDSGTNVGEFDGH-SRRVLSCAFKPSRPFRIATC---GEDFLVNFYEG---PPFKFKLSHRGHSNFVNCVRFSPDGSKF  203 (609)
Q Consensus       131 ~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~i~t~---~~d~~i~~~~~---~~~~~~~~~~~h~~~v~~l~~s~dg~~l  203 (609)
                       |++...+...... .+.=.+++|-|.|.. +|+-   +.|..|.+++-   +.+.....+......+..++|+.++..|
T Consensus       227 -~drEg~Lns~se~~~~l~~~LsWkPsgs~-iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL  304 (1265)
T KOG1920|consen  227 -YDREGALNSTSEPVEGLQHSLSWKPSGSL-IAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL  304 (1265)
T ss_pred             -ecccchhhcccCcccccccceeecCCCCe-EeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence             4443222211111 112246899999885 5553   44556777752   2233333333344458999999999998


Q ss_pred             EE---EeCCCcEEEEeCCCCc
Q 007283          204 IS---VSSDKKGIIYDGKTAD  221 (609)
Q Consensus       204 ~s---~~~d~~i~iwd~~~~~  221 (609)
                      |+   ......+.+|-..+.+
T Consensus       305 Av~~~~~e~~~v~lwt~~Nyh  325 (1265)
T KOG1920|consen  305 AVVTSNLENSLVQLWTTGNYH  325 (1265)
T ss_pred             eeeecccccceEEEEEecCeE
Confidence            87   4455569999755443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=97.64  E-value=0.012  Score=55.92  Aligned_cols=192  Identities=16%  Similarity=0.188  Sum_probs=91.9

Q ss_pred             ccCcCceeEEeecCCCCeEEEeCCCEEEEEeCC-CCcc-ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc
Q 007283           13 STERGRGILISGHPKSNSILYTNGRSVIILDLS-NPLQ-VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH   90 (609)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~-~~~~-~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~   90 (609)
                      .+..|.++.+.+..++...++...+.  ||... .++. .....+-.+.+..+..++||+|+|.++...-.+-||--...
T Consensus       100 ~~lpgs~~~i~~l~~~~~~l~~~~G~--iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~  177 (302)
T PF14870_consen  100 SKLPGSPFGITALGDGSAELAGDRGA--IYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTT  177 (302)
T ss_dssp             TT-SS-EEEEEEEETTEEEEEETT----EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS
T ss_pred             CCCCCCeeEEEEcCCCcEEEEcCCCc--EEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCcc
Confidence            34457777777666665554444332  33333 3332 22233445678889999999999998777777888754221


Q ss_pred             eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec-------CCccEEEEEEeeCCCeEEEE
Q 007283           91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG-------HSRRVLSCAFKPSRPFRIAT  163 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------h~~~v~~~~~~p~~~~~i~t  163 (609)
                       -...-+.-+..|..+.|+||+...+....+    .++.-.  ......++..       ....+..++|.+++. +.|+
T Consensus       178 -w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg----~~~~s~--~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~-~wa~  249 (302)
T PF14870_consen  178 -WQPHNRNSSRRIQSMGFSPDGNLWMLARGG----QIQFSD--DPDDGETWSEPIIPIKTNGYGILDLAYRPPNE-IWAV  249 (302)
T ss_dssp             --EEEE--SSS-EEEEEE-TTS-EEEEETTT----EEEEEE---TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEE
T ss_pred             -ceEEccCccceehhceecCCCCEEEEeCCc----EEEEcc--CCCCccccccccCCcccCceeeEEEEecCCCC-EEEE
Confidence             112233456789999999998765654222    122222  1112222222       122378899998876 4776


Q ss_pred             ecCCCeEEEEe-CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          164 CGEDFLVNFYE-GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       164 ~~~d~~i~~~~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      |+....++--| ..+++....-..-...++.+.|.++.+-++ .+.+|.+.-|
T Consensus       250 gg~G~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  250 GGSGTLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             ESTT-EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             eCCccEEEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence            66654333223 344444433333445578888876654444 5677776655

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.59  E-value=0.024  Score=59.76  Aligned_cols=180  Identities=15%  Similarity=0.111  Sum_probs=97.7

Q ss_pred             CCCcEEEEECCCCCEEEEEe------CCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           57 AYPATVARFSPNGEWIASAD------VSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~------~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      ...+..+++||||+.+|...      .|+.-+||-...+... ..+.. ........|+|||+.|.++.++..  +.++.
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~-g~~~t~PsWspDG~~lw~v~dg~~--~~~v~  424 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLE-GHSLTRPSWSLDADAVWVVVDGNT--VVRVI  424 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeec-CCCCCCceECCCCCceEEEecCcc--eEEEe
Confidence            34688999999999998544      3555677755433222 22222 224788999999998888876532  22222


Q ss_pred             EcCCCCeeEEEe--------cCCccEEEEEEeeCCCeEEEEecCCCeEEEE---eCCCCceee----ec-cCcccceEEE
Q 007283          131 MWDSGTNVGEFD--------GHSRRVLSCAFKPSRPFRIATCGEDFLVNFY---EGPPFKFKL----SH-RGHSNFVNCV  194 (609)
Q Consensus       131 ~~~~~~~~~~~~--------~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~---~~~~~~~~~----~~-~~h~~~v~~l  194 (609)
                      .-+....+..+.        .....|.++.|+|||..+++..  ++.+.+-   ....+....    .+ .+-...+..+
T Consensus       425 ~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~--~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l  502 (591)
T PRK13616        425 RDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII--GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSL  502 (591)
T ss_pred             ccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE--CCEEEEEEEEeCCCCceeecccEEeecccCCccccc
Confidence            222222222111        2245699999999998644433  3455552   222332111    11 1222346789


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCC-CccccccCcCCCCccceEEEEECCC
Q 007283          195 RFSPDGSKFISVSSDKKGIIYDGKT-ADKIGELSPEDGHKGSVYAVSWSPD  244 (609)
Q Consensus       195 ~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~spd  244 (609)
                      .|.+++.+ +++..++...+|.+.- +.....+ ........+.+++-+++
T Consensus       503 ~W~~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~-~~~n~~~~v~~vaa~~~  551 (591)
T PRK13616        503 DWRTGDSL-VVGRSDPEHPVWYVNLDGSNSDAL-PSRNLSAPVVAVAASPS  551 (591)
T ss_pred             eEecCCEE-EEEecCCCCceEEEecCCcccccc-CCCCccCceEEEecCCc
Confidence            99999984 4565555555554321 2111111 11123456777777663

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.57  E-value=0.0029  Score=65.55  Aligned_cols=105  Identities=16%  Similarity=0.324  Sum_probs=74.2

Q ss_pred             EEEeeCCCeEEEEec----CCCeEEEEe--CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283          151 CAFKPSRPFRIATCG----EDFLVNFYE--GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       151 ~~~~p~~~~~i~t~~----~d~~i~~~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      .+|||..++ +|+++    ..|.+.+|-  ++|... .+.   .-.+++++|+|..-.|+.|=.-|.+.+|...+.+. +
T Consensus        21 ~SWHPsePl-fAVA~fS~er~GSVtIfadtGEPqr~-Vt~---P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-h   94 (1416)
T KOG3617|consen   21 SSWHPSEPL-FAVASFSPERGGSVTIFADTGEPQRD-VTY---PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-H   94 (1416)
T ss_pred             cccCCCCce-eEEEEecCCCCceEEEEecCCCCCcc-ccc---ceehhhhccChHHHHHhhccccceeEEEecCCcee-e
Confidence            478888875 55543    335666663  332211 111   12256799999987788887888999997655442 3


Q ss_pred             ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +.  ...|+..|..+.|||+|..|+++-.-|.+.+|...
T Consensus        95 tv--~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   95 TV--VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ee--ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            33  24699999999999999999999999999999765

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.55  E-value=0.065  Score=53.81  Aligned_cols=233  Identities=15%  Similarity=0.130  Sum_probs=140.1

Q ss_pred             ceeecCCCccCcCceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccc-cCCCCcEEEEECCCCCEEEEEeC---C
Q 007283            5 AETYTCVPSTERGRGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYG-EHAYPATVARFSPNGEWIASADV---S   78 (609)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~las~~~---d   78 (609)
                      .+++++.....-..|..+...+.++.+.-++  .+.+.+.|+...+...... |.  .-..++++|+++.+..+..   +
T Consensus        62 ~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~  139 (381)
T COG3391          62 SNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGN  139 (381)
T ss_pred             cceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCC
Confidence            4455554444335667888899988655444  4789999977666544322 22  4567899999988876554   6


Q ss_pred             CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-E---EecCCccEEEEEEe
Q 007283           79 GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-E---FDGHSRRVLSCAFK  154 (609)
Q Consensus        79 ~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~h~~~v~~~~~~  154 (609)
                      +++.+-|..+.+.... ...-..+ ..++++|+|+++..+..+.  ..+.+.+-+...... .   ...-...-..+.+.
T Consensus       140 ~~vsvid~~t~~~~~~-~~vG~~P-~~~a~~p~g~~vyv~~~~~--~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~  215 (381)
T COG3391         140 NTVSVIDAATNKVTAT-IPVGNTP-TGVAVDPDGNKVYVTNSDD--NTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVD  215 (381)
T ss_pred             ceEEEEeCCCCeEEEE-EecCCCc-ceEEECCCCCeEEEEecCC--CeEEEEeCCCcceeccccccccccCCCCceEEEC
Confidence            7788888777665544 2222233 8899999999777765322  234444433222111 0   01111223457888


Q ss_pred             eCCCeEEEEecCC--CeEEEEeCCCCceeee--ccCcccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccCcC
Q 007283          155 PSRPFRIATCGED--FLVNFYEGPPFKFKLS--HRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKTADKIGELSPE  229 (609)
Q Consensus       155 p~~~~~i~t~~~d--~~i~~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~  229 (609)
                      |++....++....  ..+...|..+......  ..+-. .-..+.++|+|+.+.+... .+.+.+-|..+..........
T Consensus       216 ~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~  294 (381)
T COG3391         216 PDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTG  294 (381)
T ss_pred             CCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeeccc
Confidence            9998766665544  5777777766554433  11222 4456789999998777744 478888887776655544322


Q ss_pred             CCCccceEEEEECCC
Q 007283          230 DGHKGSVYAVSWSPD  244 (609)
Q Consensus       230 ~~h~~~V~~l~~spd  244 (609)
                      ......+..+++.+.
T Consensus       295 ~~~~~~~~~~~~~~~  309 (381)
T COG3391         295 NEALGEPVSIAISPL  309 (381)
T ss_pred             ccccccceeccceee
Confidence            222234555555554

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.54  E-value=0.00047  Score=69.88  Aligned_cols=112  Identities=19%  Similarity=0.266  Sum_probs=85.4

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE---E--
Q 007283          453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK---L--  527 (609)
Q Consensus       453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~---~--  527 (609)
                      -+++..+++++.|+.-|.+++|+-.++.+. .....+-.+.+.....|++..++|.|+..+.|-++-+......   +  
T Consensus        39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~-~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t  117 (726)
T KOG3621|consen   39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMR-KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDYVT  117 (726)
T ss_pred             EEeecCCceEEEecccceEEEEecCchhhh-cccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcceeec
Confidence            345677899999999999999987665543 2233345567778889999999999999999988865542211   1  


Q ss_pred             eeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       528 ~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      ..-+.|...|+|++||+|++.+.+|..-|+|.+-.++.
T Consensus       118 ~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  118 PCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             cccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence            11234778899999999999999999999999877764

>smart00320 WD40 WD40 repeats

Probab=97.51  E-value=0.00018  Score=44.57  Aligned_cols=35  Identities=37%  Similarity=0.759  Sum_probs=31.4

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEc
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWG   85 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd   85 (609)
                      ..+..|...|.+++|+|+++++++++.|+.+++|+
T Consensus         6 ~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        6 KTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            44567888999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.44  E-value=0.021  Score=59.59  Aligned_cols=111  Identities=21%  Similarity=0.276  Sum_probs=77.6

Q ss_pred             cCceeEEeecCCCCeEEEe-----CCCEEEEEeCC-CCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283           16 RGRGILISGHPKSNSILYT-----NGRSVIILDLS-NPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND   89 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~-----~~~~~~i~~~~-~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~   89 (609)
                      .+.+..++.||..-.++-.     .|+++.||.=. .|.....+.-|   +++++|+|..-.||.|=.-|.+-+|...+.
T Consensus        15 davsti~SWHPsePlfAVA~fS~er~GSVtIfadtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~~~v~~~~~~   91 (1416)
T KOG3617|consen   15 DAVSTISSWHPSEPLFAVASFSPERGGSVTIFADTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGVSDVQKTNTT   91 (1416)
T ss_pred             cccccccccCCCCceeEEEEecCCCCceEEEEecCCCCCccccccee---hhhhccChHHHHHhhccccceeEEEecCCc
Confidence            6778889999988766422     35777777532 23333334444   567999999999999988899999987664


Q ss_pred             ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283           90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD  133 (609)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  133 (609)
                      +. ......|..+|..+.|||||..|++.. ..  ..+.+|..+
T Consensus        92 e~-htv~~th~a~i~~l~wS~~G~~l~t~d-~~--g~v~lwr~d  131 (1416)
T KOG3617|consen   92 ET-HTVVETHPAPIQGLDWSHDGTVLMTLD-NP--GSVHLWRYD  131 (1416)
T ss_pred             ee-eeeccCCCCCceeEEecCCCCeEEEcC-CC--ceeEEEEee
Confidence            42 233456788999999999999998753 22  234555554

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.43  E-value=0.012  Score=45.92  Aligned_cols=91  Identities=21%  Similarity=0.276  Sum_probs=61.6

Q ss_pred             CEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEE
Q 007283          460 SEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC  539 (609)
Q Consensus       460 ~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~  539 (609)
                      ..|++||.|..||+|+-.  .+..+   ....+.|.++.-... ..++.+..+|+|-+|+...+....|    ....+++
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~~~E---i~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRiK----SK~~~~~   85 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EIVAE---ITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRIK----SKNQVTS   85 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cEEEE---EecccceEEEEEcCC-CEEEEEecCCEEEEEeCcceeeeec----cCCCeEE
Confidence            579999999999999743  33211   123567888877666 6689999999999998655544443    1223666


Q ss_pred             EEECC---CC-cEEEEEeCCCeEEE
Q 007283          540 LAWSP---NN-SMVATGSLDTCVII  560 (609)
Q Consensus       540 l~~s~---d~-~~l~s~s~D~~v~v  560 (609)
                      +++..   || .-|++|-.+|.|-+
T Consensus        86 ~~~~D~~gdG~~eLI~GwsnGkve~  110 (111)
T PF14783_consen   86 MAFYDINGDGVPELIVGWSNGKVEV  110 (111)
T ss_pred             EEEEcCCCCCceEEEEEecCCeEEe
Confidence            65543   23 36888988887753

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.42  E-value=0.013  Score=45.74  Aligned_cols=89  Identities=18%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEE
Q 007283          504 SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYG  583 (609)
Q Consensus       504 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~  583 (609)
                      ..|++||.|..||+|+-.  +. +.+ ..-.+.|++|.-... ..++.|..+|+|-+|+-..   .++.++.-|.  +.+
T Consensus        16 ~eLlvGs~D~~IRvf~~~--e~-~~E-i~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~---RlWRiKSK~~--~~~   85 (111)
T PF14783_consen   16 NELLVGSDDFEIRVFKGD--EI-VAE-ITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ---RLWRIKSKNQ--VTS   85 (111)
T ss_pred             ceEEEecCCcEEEEEeCC--cE-EEE-EecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc---eeeeeccCCC--eEE
Confidence            689999999999999732  22 222 234667888888876 5578999999999998532   3455555443  677


Q ss_pred             EEEcCCC-----eEEEEeCCCcEE
Q 007283          584 LAFTDEH-----SVVSSGEDACVR  602 (609)
Q Consensus       584 ~~~s~~~-----~l~s~s~D~~i~  602 (609)
                      +++.|-.     -||+|-.+|.|-
T Consensus        86 ~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   86 MAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEcCCCCCceEEEEEecCCeEE
Confidence            7765322     588999988774

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.39  E-value=0.17  Score=51.28  Aligned_cols=251  Identities=13%  Similarity=0.069  Sum_probs=122.9

Q ss_pred             CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccc-----eeEEEEC
Q 007283           35 NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR-----IDDLQWS  109 (609)
Q Consensus        35 ~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~-----v~~~~~s  109 (609)
                      ..+.++.+|..+++++-.............+. ++ .+..+..++.+.-.|..+++.+- .+......     .......
T Consensus       128 ~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~-~~-~v~v~~~~g~l~ald~~tG~~~W-~~~~~~~~~~~~~~~sP~v~  204 (394)
T PRK11138        128 EKGQVYALNAEDGEVAWQTKVAGEALSRPVVS-DG-LVLVHTSNGMLQALNESDGAVKW-TVNLDVPSLTLRGESAPATA  204 (394)
T ss_pred             CCCEEEEEECCCCCCcccccCCCceecCCEEE-CC-EEEEECCCCEEEEEEccCCCEee-eecCCCCcccccCCCCCEEE
Confidence            34678888988888754443222111112222 34 44456678888888888877432 22211000     0011111


Q ss_pred             CCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCC-------ccEEEEEEee--CCCeEEEEecCCCeEEEEeCCCCce
Q 007283          110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHS-------RRVLSCAFKP--SRPFRIATCGEDFLVNFYEGPPFKF  180 (609)
Q Consensus       110 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-------~~v~~~~~~p--~~~~~i~t~~~d~~i~~~~~~~~~~  180 (609)
                       ++..++..+++    .+...+.++++.+....-..       .....+.-+|  .+.. +..++.++.+...|..+++.
T Consensus       205 -~~~v~~~~~~g----~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~-vy~~~~~g~l~ald~~tG~~  278 (394)
T PRK11138        205 -FGGAIVGGDNG----RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGV-VYALAYNGNLVALDLRSGQI  278 (394)
T ss_pred             -CCEEEEEcCCC----EEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCE-EEEEEcCCeEEEEECCCCCE
Confidence             23222222221    12333444444333221000       0000011111  1233 44556677788888777654


Q ss_pred             eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283          181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW  260 (609)
Q Consensus       181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iw  260 (609)
                      .-...  ......+.  .++..+..++.++.+..+|..+++.+...... .+ ....+...  .+.+++.++.||.+...
T Consensus       279 ~W~~~--~~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~-~~-~~~~sp~v--~~g~l~v~~~~G~l~~l  350 (394)
T PRK11138        279 VWKRE--YGSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDL-LH-RLLTAPVL--YNGYLVVGDSEGYLHWI  350 (394)
T ss_pred             EEeec--CCCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEccccc-CC-CcccCCEE--ECCEEEEEeCCCEEEEE
Confidence            32221  01111111  24556777888999999999888765443211 11 11112222  25567788899999999


Q ss_pred             ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      |...   ++.+.........    ........++.+++++.+|.++.+.
T Consensus       351 d~~t---G~~~~~~~~~~~~----~~s~P~~~~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        351 NRED---GRFVAQQKVDSSG----FLSEPVVADDKLLIQARDGTVYAIT  392 (394)
T ss_pred             ECCC---CCEEEEEEcCCCc----ceeCCEEECCEEEEEeCCceEEEEe
Confidence            9763   5555444321111    1111223466788888888877765

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.39  E-value=0.2  Score=50.87  Aligned_cols=137  Identities=12%  Similarity=0.056  Sum_probs=78.8

Q ss_pred             CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283          459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN  538 (609)
Q Consensus       459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~  538 (609)
                      +..+++++.+|.++.+|..++...-...+    +....+.  .++..+..++.++.+...|..+++...+....-.....
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~  329 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREY----GSVNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLT  329 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecC----CCccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCccc
Confidence            45677778899999999887764322211    1111111  23455666778899999998777654322110011111


Q ss_pred             EEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEE-EEEcCCCeEEEEeCCCcEEEEEc
Q 007283          539 CLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYG-LAFTDEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       539 ~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~-~~~s~~~~l~s~s~D~~i~~W~~  606 (609)
                      +..+  .+.+|+.++.||.|.+.|..++. .+..... ....+.+ -.+. +..|+-++.||.+..+++
T Consensus       330 sp~v--~~g~l~v~~~~G~l~~ld~~tG~-~~~~~~~-~~~~~~s~P~~~-~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        330 APVL--YNGYLVVGDSEGYLHWINREDGR-FVAQQKV-DSSGFLSEPVVA-DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             CCEE--ECCEEEEEeCCCEEEEEECCCCC-EEEEEEc-CCCcceeCCEEE-CCEEEEEeCCceEEEEeC
Confidence            2222  24557788999999999987643 3323222 1222332 2233 456777899999887764

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.39  E-value=0.045  Score=49.94  Aligned_cols=210  Identities=13%  Similarity=0.197  Sum_probs=112.6

Q ss_pred             CCEEEEEeCCCCccccc--------cccCCCCcEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCceeeEEEeecccc
Q 007283           36 GRSVIILDLSNPLQVSI--------YGEHAYPATVARFSPNGEWIASADVS-----GTVRIWGAHNDHVLKKEFRVLSGR  102 (609)
Q Consensus        36 ~~~~~i~~~~~~~~~~~--------~~~h~~~v~~~~~sp~g~~las~~~d-----~~i~vWd~~~~~~~~~~~~~~~~~  102 (609)
                      |.-..++|.++..+..+        |-||.      .|||||++|....+|     |.|-|||...+-...-+++.|.-.
T Consensus        90 Gtf~~vfD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG  163 (366)
T COG3490          90 GTFAMVFDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG  163 (366)
T ss_pred             CceEEEECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC
Confidence            44566788777665433        34554      599999999865554     689999987532222456666656


Q ss_pred             eeEEEECCCCCEEEEEECCCCcc----e-----------EEEEEcCCCCeeE--EEe--cCCccEEEEEEeeCCCeEEEE
Q 007283          103 IDDLQWSPDGLRIVACGDGKGKS----L-----------VRAFMWDSGTNVG--EFD--GHSRRVLSCAFKPSRPFRIAT  163 (609)
Q Consensus       103 v~~~~~spdg~~l~~~~~~~~~~----~-----------~~~~~~~~~~~~~--~~~--~h~~~v~~~~~~p~~~~~i~t  163 (609)
                      .-.+.|.+||+.|+..+.+-..+    .           +.+.+-.++..+.  ++.  .+.-.|..++..+++.. .+.
T Consensus       164 pHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtv-wfg  242 (366)
T COG3490         164 PHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTV-WFG  242 (366)
T ss_pred             cceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcE-EEE
Confidence            67889999999888876431110    0           0011101111111  112  23345667777777652 332


Q ss_pred             ecCCCeEEEEeCCC----------Cceee----eccCcccceEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCccccccCc
Q 007283          164 CGEDFLVNFYEGPP----------FKFKL----SHRGHSNFVNCVRFSPDGSKFISVSSD-KKGIIYDGKTADKIGELSP  228 (609)
Q Consensus       164 ~~~d~~i~~~~~~~----------~~~~~----~~~~h~~~v~~l~~s~dg~~l~s~~~d-~~i~iwd~~~~~~~~~~~~  228 (609)
                      |-+-+.-  -|.++          .+...    ....-.++|-+++.+.+..+++..+-. +...+||..++.....-..
T Consensus       243 cQy~G~~--~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l  320 (366)
T COG3490         243 CQYRGPR--NDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL  320 (366)
T ss_pred             EEeeCCC--ccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc
Confidence            2111100  01111          11000    001123577888888765555555544 4567899999886543211


Q ss_pred             CCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          229 EDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       229 ~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                           ..+-.+  -+...-++..+.+|.+.++.
T Consensus       321 -----~daaGv--a~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         321 -----PDAAGV--AAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             -----cccccc--eeccCceEEecCCceEEecc
Confidence                 011122  23344466777789988874

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.39  E-value=0.016  Score=61.18  Aligned_cols=134  Identities=17%  Similarity=0.151  Sum_probs=76.8

Q ss_pred             eeEEeecCCCCeEEEeC-------C--CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC-CcEEE-----
Q 007283           19 GILISGHPKSNSILYTN-------G--RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS-GTVRI-----   83 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~-------~--~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d-~~i~v-----   83 (609)
                      .-..+.+|||+.++|..       +  ..+.+.+.....+ ....+.  ..+...|+|||+.|++.+.. ..+++     
T Consensus       352 vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~-~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        352 ITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAV-QVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcce-eeecCC--CCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            34677899999998875       2  2555666533332 223332  38899999999988877532 22233     


Q ss_pred             ----E--cCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC-ee---EEEe-cCCccEEEEE
Q 007283           84 ----W--GAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT-NV---GEFD-GHSRRVLSCA  152 (609)
Q Consensus        84 ----W--d~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~-~~---~~~~-~h~~~v~~~~  152 (609)
                          |  +++.++. . .  ...+.|..++|||||++++.+.+++ ..+..+..-+.+. .+   ..+. +-...+.+++
T Consensus       429 ~gql~~~~vd~ge~-~-~--~~~g~Issl~wSpDG~RiA~i~~g~-v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~  503 (591)
T PRK13616        429 TGQLARTPVDASAV-A-S--RVPGPISELQLSRDGVRAAMIIGGK-VYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLD  503 (591)
T ss_pred             CceEEEEeccCchh-h-h--ccCCCcCeEEECCCCCEEEEEECCE-EEEEEEEeCCCCceeecccEEeecccCCccccce
Confidence                3  2222211 0 0  2345799999999999999887542 1111112212232 11   1122 2223467889


Q ss_pred             EeeCCCeE
Q 007283          153 FKPSRPFR  160 (609)
Q Consensus       153 ~~p~~~~~  160 (609)
                      |.+++...
T Consensus       504 W~~~~~L~  511 (591)
T PRK13616        504 WRTGDSLV  511 (591)
T ss_pred             EecCCEEE
Confidence            99988743

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.29  E-value=0.006  Score=63.96  Aligned_cols=182  Identities=15%  Similarity=0.189  Sum_probs=118.8

Q ss_pred             CeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEE
Q 007283           29 NSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQ  107 (609)
Q Consensus        29 ~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~  107 (609)
                      ..++.+. -+.++.+|+.+.+..+...-....|+-+  ..+++++.+|+..|+|-|-|..+-+. .+++..|++.|..  
T Consensus       148 ~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~im--R~Nnr~lf~G~t~G~V~LrD~~s~~~-iht~~aHs~siSD--  222 (1118)
T KOG1275|consen  148 STLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIM--RYNNRNLFCGDTRGTVFLRDPNSFET-IHTFDAHSGSISD--  222 (1118)
T ss_pred             cceeecchhhheeeeecccceeeeeeeccCCceEEE--EecCcEEEeecccceEEeecCCcCce-eeeeeccccceee--
Confidence            3344432 3677788888877766554333344444  56789999999999999999987654 3567888887765  


Q ss_pred             ECCCCCEEEEEECCCCc------ceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC----C
Q 007283          108 WSPDGLRIVACGDGKGK------SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP----P  177 (609)
Q Consensus       108 ~spdg~~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~----~  177 (609)
                      |+-.|..|++||-..-.      ..+++|++..-+.+.-+.-+-++ .-+.|+|.-..++++++..+...+-|..    +
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP  301 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNP  301 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCC
Confidence            55568899999843211      23455555432222111112121 3357788877788888888877776521    1


Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      .........-...+..+.++++|+.+|.+..+|.|.+|-
T Consensus       302 ~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  302 PAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             ccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            111222223345589999999999999999999999996

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.21  E-value=0.024  Score=58.55  Aligned_cols=186  Identities=15%  Similarity=0.162  Sum_probs=107.9

Q ss_pred             ECCCCCEEEE-EeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCC------------CcceEEEEE
Q 007283           65 FSPNGEWIAS-ADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK------------GKSLVRAFM  131 (609)
Q Consensus        65 ~sp~g~~las-~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~------------~~~~~~~~~  131 (609)
                      ++|||+.+.. ....+.+-+.|.++-++.. ++.. .+....++++|||+++.++.-+.            +...+..+.
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~-qV~V-dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfn  277 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAW-QVMV-DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFN  277 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEE-EEEe-CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEc
Confidence            4677876643 3345667777877654322 2222 23456789999999998775211            111222333


Q ss_pred             cCC-------C-------CeeEEEecC---------------CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce--
Q 007283          132 WDS-------G-------TNVGEFDGH---------------SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF--  180 (609)
Q Consensus       132 ~~~-------~-------~~~~~~~~h---------------~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~--  180 (609)
                      |..       +       ..+..+.+.               ......++++||+.++++++..+.++.+.|....+.  
T Consensus       278 i~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~  357 (635)
T PRK02888        278 IARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLF  357 (635)
T ss_pred             hHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhh
Confidence            321       1       112222222               223456899999999889998899999998766442  


Q ss_pred             ----------eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC------Cc----cccccCc--CCCCccceEE
Q 007283          181 ----------KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT------AD----KIGELSP--EDGHKGSVYA  238 (609)
Q Consensus       181 ----------~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~------~~----~~~~~~~--~~~h~~~V~~  238 (609)
                                ..+..--.+ -...+|.++|..+.|---|..+..|++.+      ++    .+..+..  ..+|...-..
T Consensus       358 ~~~~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g  436 (635)
T PRK02888        358 DGKIKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMG  436 (635)
T ss_pred             hccCCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCC
Confidence                      111111112 24678999999888888899999999765      11    1221111  1244333333


Q ss_pred             EEECCCCCeEEEEeC
Q 007283          239 VSWSPDGKQVLTASA  253 (609)
Q Consensus       239 l~~spd~~~l~s~s~  253 (609)
                      =.-.|||++|++...
T Consensus       437 ~t~~~dgk~l~~~nk  451 (635)
T PRK02888        437 ETKEADGKWLVSLNK  451 (635)
T ss_pred             CcCCCCCCEEEEccc
Confidence            334688999988754

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.21  E-value=0.091  Score=48.94  Aligned_cols=185  Identities=16%  Similarity=0.100  Sum_probs=100.9

Q ss_pred             EEEecCCCeEEEEeCCCCceeeeccC--cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCC-ccceE
Q 007283          161 IATCGEDFLVNFYEGPPFKFKLSHRG--HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGH-KGSVY  237 (609)
Q Consensus       161 i~t~~~d~~i~~~~~~~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h-~~~V~  237 (609)
                      +.+++.++.+..+|..+++..-.+..  .....   . ..++..++.++.++.+..+|..+++.+......... .....
T Consensus        39 v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~---~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~  114 (238)
T PF13360_consen   39 VYVASGDGNLYALDAKTGKVLWRFDLPGPISGA---P-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS  114 (238)
T ss_dssp             EEEEETTSEEEEEETTTSEEEEEEECSSCGGSG---E-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB-
T ss_pred             EEEEcCCCEEEEEECCCCCEEEEeeccccccce---e-eecccccccccceeeeEecccCCcceeeeecccccccccccc
Confidence            55557888999999988876544432  11111   1 224456777778889999999999987763111100 01122


Q ss_pred             EEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCC------ccceEEEEEEcCCeEEEEEcCCcEEEEeCC
Q 007283          238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG------VDDMLVGCLWQNDFLVIVSLGGTISIFSAN  311 (609)
Q Consensus       238 ~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~  311 (609)
                      ......++..++.+..++.|..+|++   .++.+-.........      ...........++.+++.+.++.+..++..
T Consensus       115 ~~~~~~~~~~~~~~~~~g~l~~~d~~---tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~  191 (238)
T PF13360_consen  115 SSSPAVDGDRLYVGTSSGKLVALDPK---TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAVDLA  191 (238)
T ss_dssp             -SEEEEETTEEEEEETCSEEEEEETT---TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEEETT
T ss_pred             ccCceEecCEEEEEeccCcEEEEecC---CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEEECC
Confidence            23333347788888889999999987   355554443322111      111122333344566666666653333554


Q ss_pred             CCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283          312 DLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG  357 (609)
Q Consensus       312 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~  357 (609)
                      ..... ....  ...+....  ...+..++.++.++.+..|+..++
T Consensus       192 tg~~~-w~~~--~~~~~~~~--~~~~~~l~~~~~~~~l~~~d~~tG  232 (238)
T PF13360_consen  192 TGEKL-WSKP--ISGIYSLP--SVDGGTLYVTSSDGRLYALDLKTG  232 (238)
T ss_dssp             TTEEE-EEEC--SS-ECECE--ECCCTEEEEEETTTEEEEEETTTT
T ss_pred             CCCEE-EEec--CCCccCCc--eeeCCEEEEEeCCCEEEEEECCCC
Confidence            33211 1111  12222211  123356666668999999987665

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.17  E-value=0.00071  Score=70.25  Aligned_cols=160  Identities=16%  Similarity=0.196  Sum_probs=103.9

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      .+.|..|...-+|++||-+.+.|+.|+-.|.|+++.+.++.-+ .....|..+|+.+.=|.||..+++.+.         
T Consensus      1094 w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e-~s~ncH~SavT~vePs~dgs~~Ltsss--------- 1163 (1516)
T KOG1832|consen 1094 WRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSME-ESVNCHQSAVTLVEPSVDGSTQLTSSS--------- 1163 (1516)
T ss_pred             chhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccc-ccccccccccccccccCCcceeeeecc---------
Confidence            4557788888999999999999999999999999998876532 234566667777666666665554321         


Q ss_pred             EEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC-eEEEEeCC-CCceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283          130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF-LVNFYEGP-PFKFKLSHRGHSNFVNCVRFSPDGSKFISVS  207 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~-~i~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  207 (609)
                                                          ... ...+|+.. .+.....|.+    =.++.|+...+.-+.|+
T Consensus      1164 ------------------------------------~S~PlsaLW~~~s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt 1203 (1516)
T KOG1832|consen 1164 ------------------------------------SSSPLSALWDASSTGGPRHSFDE----DKAVKFSNSLQFRALGT 1203 (1516)
T ss_pred             ------------------------------------ccCchHHHhccccccCccccccc----cceeehhhhHHHHHhcc
Confidence                                                111 11234322 1222222322    35677887755555666


Q ss_pred             CCCcEEEEeCCCCccccc-cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          208 SDKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       208 ~d~~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      ......+||++++..+.+ ++...+.+..-+.+.|+|+..+++-   ||.  +||++.
T Consensus      1204 ~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dGv--LWDvR~ 1256 (1516)
T KOG1832|consen 1204 EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DGV--LWDVRI 1256 (1516)
T ss_pred             cccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cce--eeeecc
Confidence            667789999999988766 3322233333478899999988764   553  799863

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.039  Score=52.64  Aligned_cols=92  Identities=20%  Similarity=0.258  Sum_probs=72.2

Q ss_pred             EEEEeCCCCceeeeccCcccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-e
Q 007283          170 VNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-Q  247 (609)
Q Consensus       170 i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~  247 (609)
                      ++..+..+++...-+.+|...|..++|+|... ++..++-+..|.|.|.++......+.   .| ..+.+++|.-|.. +
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~---a~-~~~wSC~wDlde~h~  250 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI---AY-NQIWSCCWDLDERHV  250 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee---cc-CCceeeeeccCCcce
Confidence            45555555555555667888999999999977 78889999999999999887766553   34 6899999998765 5


Q ss_pred             EEEEeCCCcEEEeecccC
Q 007283          248 VLTASADKSAKVWDISED  265 (609)
Q Consensus       248 l~s~s~d~~i~iwd~~~~  265 (609)
                      |..|-..|.|.+||++..
T Consensus       251 IYaGl~nG~VlvyD~R~~  268 (463)
T KOG1645|consen  251 IYAGLQNGMVLVYDMRQP  268 (463)
T ss_pred             eEEeccCceEEEEEccCC
Confidence            666667899999999753

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=97.15  E-value=0.11  Score=48.71  Aligned_cols=148  Identities=20%  Similarity=0.174  Sum_probs=90.5

Q ss_pred             ceeEEeecCCCCeEEEeC----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEc-CCCCcee
Q 007283           18 RGILISGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWG-AHNDHVL   92 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd-~~~~~~~   92 (609)
                      .....+.+++|+.+++..    +..+++.......... +.+  ..+....|+|+|.+.+....+...+++. ..+++..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~-~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV-LTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee-ccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            456888999999887754    3566666654433322 333  3688999999998888877777778884 2333322


Q ss_pred             eEEEee--cccceeEEEECCCCCEEEEEECCCCcceEEEE--EcCCCC-e------eEEEecCCccEEEEEEeeCCCeEE
Q 007283           93 KKEFRV--LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF--MWDSGT-N------VGEFDGHSRRVLSCAFKPSRPFRI  161 (609)
Q Consensus        93 ~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~--~~~~~~-~------~~~~~~h~~~v~~~~~~p~~~~~i  161 (609)
                      ......  ..+.|..+++||||.+++.+....+...+.+-  ..+... .      ..........+..++|.+++...+
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence            222222  22279999999999999988732222222221  222211 1      111123346789999999988655


Q ss_pred             EEecCCC
Q 007283          162 ATCGEDF  168 (609)
Q Consensus       162 ~t~~~d~  168 (609)
                      ++...+.
T Consensus       182 ~~~~~~~  188 (253)
T PF10647_consen  182 LGRSAGG  188 (253)
T ss_pred             EeCCCCC
Confidence            5555555

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.14  E-value=0.14  Score=52.31  Aligned_cols=116  Identities=15%  Similarity=0.194  Sum_probs=70.8

Q ss_pred             cEEEEECCCCCEEEE-EeCCC----cEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcc------eEE
Q 007283           60 ATVARFSPNGEWIAS-ADVSG----TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS------LVR  128 (609)
Q Consensus        60 v~~~~~sp~g~~las-~~~d~----~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~------~~~  128 (609)
                      +...++||||++||- .+..|    ++++.|+.+++.+...+...  ....++|.+|++.++...-+....      --+
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~  203 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ  203 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence            446789999999983 34444    69999999987544333221  123399999999888877444322      345


Q ss_pred             EEEcCCCCe----eEEEecCCcc--EEEEEEeeCCCeEEEEecCCC---eEEEEeCCC
Q 007283          129 AFMWDSGTN----VGEFDGHSRR--VLSCAFKPSRPFRIATCGEDF---LVNFYEGPP  177 (609)
Q Consensus       129 ~~~~~~~~~----~~~~~~h~~~--v~~~~~~p~~~~~i~t~~~d~---~i~~~~~~~  177 (609)
                      ++.|..++.    ...+.+....  ...+..++++.++++......   .+.+.+...
T Consensus       204 v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~  261 (414)
T PF02897_consen  204 VYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD  261 (414)
T ss_dssp             EEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred             EEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence            666665543    2344443332  568888999998776654443   344445543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.10  E-value=0.26  Score=47.36  Aligned_cols=215  Identities=13%  Similarity=0.122  Sum_probs=117.9

Q ss_pred             ecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEE-EECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec-
Q 007283           24 GHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVA-RFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL-   99 (609)
Q Consensus        24 ~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~-~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~-   99 (609)
                      ..|+.+.|++..  ++.+.-|+..+++... +.. .+.+.+. .+...|+++++.   ..+.+++.+++.. ...+... 
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d~~g~Lv~~~---~g~~~~~~~~~~~-~t~~~~~~  105 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALIDAGGRLIACE---HGVRLLDPDTGGK-ITLLAEPE  105 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeecCCCeEEEEc---cccEEEeccCCce-eEEecccc
Confidence            566677677764  5777778776554432 332 2334444 455555555433   3466677654432 1111111 


Q ss_pred             ----ccceeEEEECCCCCEEEEEEC------CCCcceEEEEEcC-CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC
Q 007283          100 ----SGRIDDLQWSPDGLRIVACGD------GKGKSLVRAFMWD-SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF  168 (609)
Q Consensus       100 ----~~~v~~~~~spdg~~l~~~~~------~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~  168 (609)
                          ......+...|||...+..-.      ........+|..+ .+.....+.+|-..-+.++|||++...+++=+..+
T Consensus       106 ~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~  185 (307)
T COG3386         106 DGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN  185 (307)
T ss_pred             CCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence                124567888999987776543      1112234556666 44445555555556678999999986555545556


Q ss_pred             eEEEEeCCC--C---ce--eeeccCcccceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283          169 LVNFYEGPP--F---KF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDK-KGIIYDGKTADKIGELSPEDGHKGSVYAVS  240 (609)
Q Consensus       169 ~i~~~~~~~--~---~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~  240 (609)
                      .+.-++...  +   ..  ...+....+..=.++...+|.+.+.+..+| .|..|+.. ++.+..+..   +...+++++
T Consensus       186 ~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l---P~~~~t~~~  261 (307)
T COG3386         186 RIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL---PVKRPTNPA  261 (307)
T ss_pred             eEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC---CCCCCccce
Confidence            665554432  1   11  111112233334456667777665554444 88888887 777665532   225677788


Q ss_pred             ECC-CCCeE
Q 007283          241 WSP-DGKQV  248 (609)
Q Consensus       241 ~sp-d~~~l  248 (609)
                      |-- +.+.|
T Consensus       262 FgG~~~~~L  270 (307)
T COG3386         262 FGGPDLNTL  270 (307)
T ss_pred             EeCCCcCEE
Confidence            753 33433

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=97.08  E-value=0.018  Score=60.57  Aligned_cols=176  Identities=16%  Similarity=0.212  Sum_probs=106.8

Q ss_pred             EeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEe
Q 007283           75 ADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFK  154 (609)
Q Consensus        75 ~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~  154 (609)
                      |+-...+...|+.+.+.. +.......+|.-++-.   .+++.+|+..+  .+.+.+....+.+.+++.|++.|..++. 
T Consensus       153 Gg~Q~~li~~Dl~~~~e~-r~~~v~a~~v~imR~N---nr~lf~G~t~G--~V~LrD~~s~~~iht~~aHs~siSDfDv-  225 (1118)
T KOG1275|consen  153 GGLQEKLIHIDLNTEKET-RTTNVSASGVTIMRYN---NRNLFCGDTRG--TVFLRDPNSFETIHTFDAHSGSISDFDV-  225 (1118)
T ss_pred             cchhhheeeeecccceee-eeeeccCCceEEEEec---CcEEEeecccc--eEEeecCCcCceeeeeeccccceeeeec-
Confidence            333344555565543321 1111222234444432   36666776554  3455666677788999999999986665 


Q ss_pred             eCCCeEEEEecCC---------CeEEEEeCCCCceeeeccCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC-cc-
Q 007283          155 PSRPFRIATCGED---------FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTA-DK-  222 (609)
Q Consensus       155 p~~~~~i~t~~~d---------~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~-~~-  222 (609)
                       .|. .+++||..         .-+++||.+..+......-+.++ .-+.|+|. ...+++++..|...+-|..+- +. 
T Consensus       226 -~GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~  302 (1118)
T KOG1275|consen  226 -QGN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP  302 (1118)
T ss_pred             -cCC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc
Confidence             454 47777754         34678887665443333223222 34678887 447888888888888773221 11 


Q ss_pred             ccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       223 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      ...+. ...-...+.++++|+.+..++-+-.+|.|.+|-
T Consensus       303 ~~~~~-v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  303 AGVKM-VNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cceeE-EccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            11110 111234599999999999999999999999996

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.07  E-value=0.45  Score=48.64  Aligned_cols=238  Identities=14%  Similarity=0.062  Sum_probs=117.4

Q ss_pred             EEeecCCCCeEEEe---CC---CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCC-----------cEEE
Q 007283           21 LISGHPKSNSILYT---NG---RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSG-----------TVRI   83 (609)
Q Consensus        21 ~~~~~~~~~~l~~~---~~---~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~-----------~i~v   83 (609)
                      ....+|+|+.++|.   +|   ..+.++|+.+++.+..- -....-..+.|.+||+.|.....+.           .|..
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~-i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDG-IENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEE-EEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCc-ccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            56789999999886   34   36889999888654311 0111123489999999887554332           3777


Q ss_pred             EcCCCCcee-eEEEeecccc--eeEEEECCCCCEEEEEECCCCc-ceEEEEEcCCC----CeeEEEecCCccEEEEEEee
Q 007283           84 WGAHNDHVL-KKEFRVLSGR--IDDLQWSPDGLRIVACGDGKGK-SLVRAFMWDSG----TNVGEFDGHSRRVLSCAFKP  155 (609)
Q Consensus        84 Wd~~~~~~~-~~~~~~~~~~--v~~~~~spdg~~l~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~h~~~v~~~~~~p  155 (609)
                      |.+.+.... ...+......  ...+..++|+++|+........ ..+.+.+.+.+    .....+..+...+....-+.
T Consensus       207 ~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~~~  286 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVDHH  286 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEEEE
T ss_pred             EECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEEcc
Confidence            777665321 1234444433  5678999999988864433333 44555555443    22333444443343333333


Q ss_pred             CCCeEEEEe--cCCCeEEEEeCCCCc---eeeeccCccc--ceEEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCccccc
Q 007283          156 SRPFRIATC--GEDFLVNFYEGPPFK---FKLSHRGHSN--FVNCVRFSPDGSKFI-SVSSDK--KGIIYDGKTADKIGE  225 (609)
Q Consensus       156 ~~~~~i~t~--~~d~~i~~~~~~~~~---~~~~~~~h~~--~v~~l~~s~dg~~l~-s~~~d~--~i~iwd~~~~~~~~~  225 (609)
                      ++.+.+.|-  ...+.+.-.+.....   ....+..|..  .+..+..  .+..|+ .--.++  .+.+++...+.....
T Consensus       287 ~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~~~  364 (414)
T PF02897_consen  287 GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKESRE  364 (414)
T ss_dssp             TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEEEE
T ss_pred             CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEEee
Confidence            444444443  122344444444332   2223444444  3444443  344444 444444  567788772232222


Q ss_pred             cCcCCCCccceEEEEECCCCCe-EEEEe-CC--CcEEEeecc
Q 007283          226 LSPEDGHKGSVYAVSWSPDGKQ-VLTAS-AD--KSAKVWDIS  263 (609)
Q Consensus       226 ~~~~~~h~~~V~~l~~spd~~~-l~s~s-~d--~~i~iwd~~  263 (609)
                      +..  .-.+.|..+...+++.. .++.+ .-  +++.-+|+.
T Consensus       365 ~~~--p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~  404 (414)
T PF02897_consen  365 IPL--PEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLA  404 (414)
T ss_dssp             EES--SSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETT
T ss_pred             ecC--CcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECC
Confidence            221  12344666665565542 22322 22  456666665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>smart00320 WD40 WD40 repeats

Probab=97.05  E-value=0.0016  Score=40.01  Aligned_cols=36  Identities=36%  Similarity=0.525  Sum_probs=31.3

Q ss_pred             eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      ...+..|...|.++.|+|++..+++++.|+.+++|+
T Consensus         5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            344557888999999999999999999999999995

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.05  E-value=0.37  Score=47.32  Aligned_cols=236  Identities=17%  Similarity=0.191  Sum_probs=114.5

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCcc---c----cccccCCCCcEEEEECCC----CCEEEEEeC------CCc
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQ---V----SIYGEHAYPATVARFSPN----GEWIASADV------SGT   80 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~---~----~~~~~h~~~v~~~~~sp~----g~~las~~~------d~~   80 (609)
                      +|..+++.|||..++.-..+.|.+++. ++..   +    .+..........++|+|+    +.+.++-+.      +..
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~~-~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVDK-DGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEET-TTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEeC-CCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            577999999999988888788888883 3332   1    112233456789999994    544443331      122


Q ss_pred             EEE--EcCCCC-------ceeeEEEee---cccceeEEEECCCCCEEEEEECCCC-----------cceEEEEEcCCCC-
Q 007283           81 VRI--WGAHND-------HVLKKEFRV---LSGRIDDLQWSPDGLRIVACGDGKG-----------KSLVRAFMWDSGT-  136 (609)
Q Consensus        81 i~v--Wd~~~~-------~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~-----------~~~~~~~~~~~~~-  136 (609)
                      .+|  |....+       +.+......   ....-..++|.|||..++++|+...           .+++|+- -+ ++ 
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~-~d-G~~  159 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRID-PD-GSI  159 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEE-TT-SSB
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEec-cc-CcC
Confidence            233  333222       112122222   2334577999999999999987543           1122221 11 11 


Q ss_pred             ------------eeEEE-ecCCccEEEEEEeeC-CCeEEEEecCCCeEEEEeCCCC--------c---------------
Q 007283          137 ------------NVGEF-DGHSRRVLSCAFKPS-RPFRIATCGEDFLVNFYEGPPF--------K---------------  179 (609)
Q Consensus       137 ------------~~~~~-~~h~~~v~~~~~~p~-~~~~i~t~~~d~~i~~~~~~~~--------~---------------  179 (609)
                                  ....+ .++. ....++|+|. +...++--|.+..-.+..+..+        .               
T Consensus       160 p~dnP~~~~~~~~~~i~A~GlR-N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~  238 (331)
T PF07995_consen  160 PADNPFVGDDGADSEIYAYGLR-NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS  238 (331)
T ss_dssp             -TTSTTTTSTTSTTTEEEE--S-EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred             CCCCccccCCCceEEEEEeCCC-ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence                        00111 1333 2457999998 6543333454432222111100        0               


Q ss_pred             ------eeeeccCcccceEEEEEcCC-------CCEEEEEeCCCcEEEEeCCCCccccccC-cCCCCccceEEEEECCCC
Q 007283          180 ------FKLSHRGHSNFVNCVRFSPD-------GSKFISVSSDKKGIIYDGKTADKIGELS-PEDGHKGSVYAVSWSPDG  245 (609)
Q Consensus       180 ------~~~~~~~h~~~v~~l~~s~d-------g~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~h~~~V~~l~~spd~  245 (609)
                            ....+..| ..+..+.|-..       |.+|+..-..+.|....+.....+.... ........+..+++.|||
T Consensus       239 ~~~~~~P~~~~~~~-~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG  317 (331)
T PF07995_consen  239 CPGFVPPVFAYPPH-SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDG  317 (331)
T ss_dssp             -TTS---SEEETTT---EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTS
T ss_pred             CCCcCccceeecCc-cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCC
Confidence                  01112222 34555666532       3344443334555555544332221111 112344579999999999


Q ss_pred             CeEEEEeCCCcEE
Q 007283          246 KQVLTASADKSAK  258 (609)
Q Consensus       246 ~~l~s~s~d~~i~  258 (609)
                      .+.++-..+|.|.
T Consensus       318 ~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  318 ALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEEE-TTTTEE
T ss_pred             eEEEEECCCCeEe
Confidence            9888887788764

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.079  Score=50.65  Aligned_cols=79  Identities=16%  Similarity=0.213  Sum_probs=55.0

Q ss_pred             ccccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           52 IYGEHAYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      .+.+|...|..++|||..+ ++..++.+.+|+|-|+++..+.                                      
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~v--------------------------------------  229 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVV--------------------------------------  229 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceee--------------------------------------
Confidence            4456666788888888777 6667888888888888764321                                      


Q ss_pred             EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283          131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP  177 (609)
Q Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~  177 (609)
                              ..+..+ ..+++|+|.-+....|..|-..|.+.+||...
T Consensus       230 --------ssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  230 --------SSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             --------eheecc-CCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence                    112223 46777888777777788888888888888653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=96.95  E-value=0.14  Score=50.21  Aligned_cols=134  Identities=18%  Similarity=0.246  Sum_probs=86.6

Q ss_pred             CcEEEEEecCC-----eeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc-eEEeeecCCCCceEEEEE
Q 007283          469 GKLRVYSIRGD-----TLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE-VKLKNMLYHTARINCLAW  542 (609)
Q Consensus       469 g~i~iw~~~~~-----~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~-~~~~~~~~h~~~i~~l~~  542 (609)
                      |.|.+|++...     .+.. .......++|.+++-- ++.++++  ....+.+|++...+ ............++++..
T Consensus        62 Gri~v~~i~~~~~~~~~l~~-i~~~~~~g~V~ai~~~-~~~lv~~--~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~  137 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKL-IHSTEVKGPVTAICSF-NGRLVVA--VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV  137 (321)
T ss_dssp             EEEEEEEECSS-----EEEE-EEEEEESS-EEEEEEE-TTEEEEE--ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred             cEEEEEEEEcccccceEEEE-EEEEeecCcceEhhhh-CCEEEEe--ecCEEEEEEccCcccchhhheecceEEEEEEec
Confidence            88999999873     3322 2233457889998765 4444443  34789999988776 433333323346666666


Q ss_pred             CCCCcEEEEEeCCCeEEEEEcCCCCCcceeE-eccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEccC
Q 007283          543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTI-KGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       543 s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~-~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      .  +.+++.|+....|.++..+........+ ......+++++.|. +++.++.+..+|++.++..++
T Consensus       138 ~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  138 F--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             E--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred             c--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence            4  5589999999999988765422122222 22234568888888 767899999999999998764

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.89  E-value=0.0086  Score=61.15  Aligned_cols=117  Identities=15%  Similarity=0.155  Sum_probs=85.0

Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCC-c
Q 007283          491 RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPAS-S  569 (609)
Q Consensus       491 ~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~-~  569 (609)
                      ...|.--+++..+++++.|+.-|.+++|+...++.......+....+..+..|++..++|.|+..|.|.|+.+..... .
T Consensus        33 ~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~  112 (726)
T KOG3621|consen   33 PARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRD  112 (726)
T ss_pred             cceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCc
Confidence            334444456678899999999999999998776543322223445566678899999999999999999998864221 1


Q ss_pred             ceeE---eccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          570 RMTI---KGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       570 ~~~~---~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      .+.+   ...|..+|+++.|+ ++..+.+|-.-|.|-+=.++
T Consensus       113 ~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~  154 (726)
T KOG3621|consen  113 LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELD  154 (726)
T ss_pred             ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEec
Confidence            1222   12377899999999 78889999988888776554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.89  E-value=0.34  Score=47.32  Aligned_cols=237  Identities=20%  Similarity=0.227  Sum_probs=109.3

Q ss_pred             EeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEE--CCCCCEEEEEe---CCC----------------
Q 007283           22 ISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARF--SPNGEWIASAD---VSG----------------   79 (609)
Q Consensus        22 ~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~--sp~g~~las~~---~d~----------------   79 (609)
                      ...+|+.+.++|. ++..+.-.|+.+.+...++.-.++-+-...+  +.|+++++-.-   .|.                
T Consensus        86 ~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~  165 (386)
T PF14583_consen   86 GFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEAR  165 (386)
T ss_dssp             -EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC-
T ss_pred             eEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhC
Confidence            4556888889887 5678999999998876777766666644444  56788876432   111                


Q ss_pred             -cEEEE--cCCCCceeeEEEeecccceeEEEECCC-CCEEEEEECCCCcce-EEEEEcCC-CCeeEEEecCCc--cEEEE
Q 007283           80 -TVRIW--GAHNDHVLKKEFRVLSGRIDDLQWSPD-GLRIVACGDGKGKSL-VRAFMWDS-GTNVGEFDGHSR--RVLSC  151 (609)
Q Consensus        80 -~i~vW--d~~~~~~~~~~~~~~~~~v~~~~~spd-g~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~h~~--~v~~~  151 (609)
                       ..+|.  |+.+++.  ..+-.-...+.-+.|||. ...|+.|-.|.-..+ .|+|..+. +.....+..|..  .+..=
T Consensus       166 p~~~i~~idl~tG~~--~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHE  243 (386)
T PF14583_consen  166 PHCRIFTIDLKTGER--KVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHE  243 (386)
T ss_dssp             --EEEEEEETTT--E--EEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEE
T ss_pred             CCceEEEEECCCCce--eEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccc
Confidence             12333  4444432  122223445678999994 556666766655543 47777764 333333333322  12223


Q ss_pred             EEeeCCCeEEEEe----cCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC----------------c
Q 007283          152 AFKPSRPFRIATC----GEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK----------------K  211 (609)
Q Consensus       152 ~~~p~~~~~i~t~----~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~----------------~  211 (609)
                      -|.|+|..+....    +.+..+.-++..+.+.....  ....-..+-.++||++++-=+.|.                .
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~--~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~  321 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLM--EMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW  321 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEE--EE-SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEE--eCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence            5678887544432    22334444555554433211  112334555678998765433332                3


Q ss_pred             EEEEeCCCCccccc------cCcCCCCcc-ceEEEEECCCCCeEEEEe-CCCcEEEeec
Q 007283          212 GIIYDGKTADKIGE------LSPEDGHKG-SVYAVSWSPDGKQVLTAS-ADKSAKVWDI  262 (609)
Q Consensus       212 i~iwd~~~~~~~~~------~~~~~~h~~-~V~~l~~spd~~~l~s~s-~d~~i~iwd~  262 (609)
                      +++++++.+.....      .....++.. .=....|+|||++++-.| ..|...||-+
T Consensus       322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             EEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence            44566665543210      001111111 125789999999766544 5676666643

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.85  E-value=0.13  Score=52.20  Aligned_cols=135  Identities=13%  Similarity=0.143  Sum_probs=73.5

Q ss_pred             eeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEE-cCCCCceeeEEEe
Q 007283           19 GILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW-GAHNDHVLKKEFR   97 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vW-d~~~~~~~~~~~~   97 (609)
                      |..++.+|.|..++-++++.-.||.....+...     .+.-...+|.+.++ .|.-....+|+|. +..........+.
T Consensus        35 p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~  108 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKA-----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKLP  108 (443)
T ss_dssp             -SEEEE-TTSSEEEEEETTEEEEEETTTTEEEE-----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-----S
T ss_pred             CeeEEECCCCCEEEEEcCCEEEEEEccCCcccc-----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcCC
Confidence            568999999999887878888888843322221     23345677888555 6666668899996 4433221111111


Q ss_pred             ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE
Q 007283           98 VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY  173 (609)
Q Consensus        98 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~  173 (609)
                         ..+..+--   |..|...+++    .+.+++|+.++.+..+.-.  .|..+.|++++.. +|-.+.+. +.++
T Consensus       109 ---~~~~~If~---G~LL~~~~~~----~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~-val~t~~~-i~il  170 (443)
T PF04053_consen  109 ---FSVEKIFG---GNLLGVKSSD----FICFYDWETGKLIRRIDVS--AVKYVIWSDDGEL-VALVTKDS-IYIL  170 (443)
T ss_dssp             ---S-EEEEE----SSSEEEEETT----EEEEE-TTT--EEEEESS---E-EEEEE-TTSSE-EEEE-S-S-EEEE
T ss_pred             ---cccceEEc---CcEEEEECCC----CEEEEEhhHcceeeEEecC--CCcEEEEECCCCE-EEEEeCCe-EEEE
Confidence               12333322   7777776654    3789999999888877633  3889999999986 44444443 3443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.79  E-value=0.0037  Score=54.95  Aligned_cols=106  Identities=15%  Similarity=0.167  Sum_probs=72.9

Q ss_pred             CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCC-Cce
Q 007283          459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT-ARI  537 (609)
Q Consensus       459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~-~~i  537 (609)
                      +.-+++|+.||.|++|+..........+..+......-|.--.++.+..+++.|+.+|.|++...+. +....+|+ .++
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~  148 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESG  148 (238)
T ss_pred             CceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCCc
Confidence            3558899999999999764211111122222222233333445677899999999999999876543 33345677 677


Q ss_pred             EEEEECCCCcEEEEE--eCCCeEEEEEcCC
Q 007283          538 NCLAWSPNNSMVATG--SLDTCVIIYEIDK  565 (609)
Q Consensus       538 ~~l~~s~d~~~l~s~--s~D~~v~vw~~~~  565 (609)
                      ..+..+..+++++.+  |.|..++.|++..
T Consensus       149 e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  149 EELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             ceeEEecCCceEEeeccccchhhhhcchhh
Confidence            788888888889988  9999999999863

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=96.79  E-value=0.69  Score=46.50  Aligned_cols=199  Identities=17%  Similarity=0.156  Sum_probs=125.3

Q ss_pred             cEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCee
Q 007283           60 ATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV  138 (609)
Q Consensus        60 v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (609)
                      -..+++++.|..+ +....+..|.+-|..+.+++.....+  .....++++|+++.+.....+.....+.+.+-.+++..
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG--~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~  153 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVG--LGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVT  153 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeec--cCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEE
Confidence            3467888988855 45555789999997776544332222  25678999999988777665422234444454455554


Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee----ccCcccceEEEEEcCCCCEEEEEeCC---Cc
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS----HRGHSNFVNCVRFSPDGSKFISVSSD---KK  211 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~----~~~h~~~v~~l~~s~dg~~l~s~~~d---~~  211 (609)
                      ....--..+ ..+++.|++...+++-..+..+.+.+.........    ...-...-..+.++|+|.++...-..   +.
T Consensus       154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            443322233 78999999997666666778888888554433320    01112223567899999966554433   58


Q ss_pred             EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecc
Q 007283          212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDIS  263 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~  263 (609)
                      +...|..++......... +.. .-..+.++|+|..+..... .+.+.+-|..
T Consensus       233 v~~id~~~~~v~~~~~~~-~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~  283 (381)
T COG3391         233 VLKIDTATGNVTATDLPV-GSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGA  283 (381)
T ss_pred             EEEEeCCCceEEEecccc-ccC-CCCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence            888888877655442111 111 3556899999998887743 4777777754

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.71  E-value=0.67  Score=47.00  Aligned_cols=174  Identities=18%  Similarity=0.205  Sum_probs=83.2

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce--eeEE---EeecccceeEEEECCCC
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV--LKKE---FRVLSGRIDDLQWSPDG  112 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~--~~~~---~~~~~~~v~~~~~spdg  112 (609)
                      .|.||+..........-.+ +++-++.|+.+.++| .-..||+++++|......  +...   .......+....|...|
T Consensus        62 ~I~iys~sG~ll~~i~w~~-~~iv~~~wt~~e~Lv-vV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSSGKLLSSIPWDS-GRIVGMGWTDDEELV-VVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCCCCEeEEEEECC-CCEEEEEECCCCeEE-EEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            5888887665543322223 789999999976655 455899999999853220  0000   01111122233445566


Q ss_pred             CEEEEEECCCCcceEEEEEcCCCCe---eEEEec-----CCc-cEE-EEEEeeCCCeEEEEecCCCeEEEEeCCCCceee
Q 007283          113 LRIVACGDGKGKSLVRAFMWDSGTN---VGEFDG-----HSR-RVL-SCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL  182 (609)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-----h~~-~v~-~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~  182 (609)
                      -.+++ ++.+   +..+..++....   ...+.+     |.. ... ...++.+....+.. ..+..+..-+....+.  
T Consensus       140 ivvLt-~~~~---~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~-~~g~~i~~i~~~~~~~--  212 (410)
T PF04841_consen  140 IVVLT-GNNR---FYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILL-ANGETIYIIDENSFKQ--  212 (410)
T ss_pred             EEEEC-CCCe---EEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEE-ecCCEEEEEEcccccc--
Confidence            33333 2211   222222221100   001110     000 000 01233333322222 2223333222111100  


Q ss_pred             eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283          183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                       . ...+++..+++||+|+++|.-..+|.+.+.+..-.+.
T Consensus       213 -i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~  250 (410)
T PF04841_consen  213 -I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK  250 (410)
T ss_pred             -c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce
Confidence             1 1235799999999999999999999988886443333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=96.70  E-value=0.0022  Score=66.80  Aligned_cols=147  Identities=16%  Similarity=0.274  Sum_probs=99.4

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCe--EEEEEccCCce
Q 007283          448 FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNRE--AIVWDRVSREV  525 (609)
Q Consensus       448 ~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~--v~iwd~~~~~~  525 (609)
                      ...+|++|+.+.++++.|+..|.|++|++.++..  +....+|..+|+-|.=|.||..+.+.+.-..  .-+|+......
T Consensus      1102 ~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred             cceeeEEeecCCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence            4578999999999999999999999999998865  3456789999999999999987776554333  45888644211


Q ss_pred             EEeeecCCC-CceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc---ccCCeEEEEEcC-CCeEEEEeCCCc
Q 007283          526 KLKNMLYHT-ARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA---HLGGVYGLAFTD-EHSVVSSGEDAC  600 (609)
Q Consensus       526 ~~~~~~~h~-~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~---h~~~v~~~~~s~-~~~l~s~s~D~~  600 (609)
                          . .|+ ..-.++.||..-++-+.|..-....+||+.+.. .+...+.+   -+-.-++..|++ +..|+-   || 
T Consensus      1180 ----~-~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~-~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG- 1249 (1516)
T KOG1832|consen 1180 ----P-RHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCS-PLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG- 1249 (1516)
T ss_pred             ----c-cccccccceeehhhhHHHHHhcccccceEEEecccCc-HHHHhcCcchhhhhhccccccCCCcceEee---Cc-
Confidence                1 233 456789999776555566666678999998632 22221221   111225666884 444443   33 


Q ss_pred             EEEEEcc
Q 007283          601 VRVWRLT  607 (609)
Q Consensus       601 i~~W~~~  607 (609)
                       .+||+.
T Consensus      1250 -vLWDvR 1255 (1516)
T KOG1832|consen 1250 -VLWDVR 1255 (1516)
T ss_pred             -eeeeec
Confidence             578775

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.70  E-value=1.2  Score=48.09  Aligned_cols=154  Identities=12%  Similarity=0.098  Sum_probs=93.0

Q ss_pred             CceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC
Q 007283          411 PKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH  490 (609)
Q Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h  490 (609)
                      ...+..+.-..+.++..+.+.+++++...+..........+...++.+...++.++.++.+...++....+.. ..-+..
T Consensus       451 ~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~l~e-~~~~~~  529 (1096)
T KOG1897|consen  451 EQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGGLRE-VSHKEF  529 (1096)
T ss_pred             CceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccceee-eeehee
Confidence            3334333333344556666677777654444444434445555666666678888878888777776554322 222334


Q ss_pred             CCceEEEEECCCC------CEEEEEeCCCeEEEEEccCC-ceEEe-eecC--CCCceEEEEECCCCcEEEEEeCCCeEEE
Q 007283          491 RGAVSVIRYSPDV------SMFASGDVNREAIVWDRVSR-EVKLK-NMLY--HTARINCLAWSPNNSMVATGSLDTCVII  560 (609)
Q Consensus       491 ~~~i~~v~~s~~~------~~l~s~s~d~~v~iwd~~~~-~~~~~-~~~~--h~~~i~~l~~s~d~~~l~s~s~D~~v~v  560 (609)
                      ...|.|++++|-|      ++++.|.++..+.+--.... ..... .+..  -...|.-..|-.|..+|.++..||.+.-
T Consensus       530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~  609 (1096)
T KOG1897|consen  530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLY  609 (1096)
T ss_pred             cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEE
Confidence            5789999999763      37889988877665432221 11111 1111  1234556677667889999999999998


Q ss_pred             EEcCC
Q 007283          561 YEIDK  565 (609)
Q Consensus       561 w~~~~  565 (609)
                      |-++.
T Consensus       610 fv~d~  614 (1096)
T KOG1897|consen  610 FVLDI  614 (1096)
T ss_pred             EEEEc
Confidence            77654

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.01  Score=59.90  Aligned_cols=92  Identities=12%  Similarity=0.114  Sum_probs=69.7

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceE-EEEECCCCCEEEEEeCCCeEEEEEccCCceEEe
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVS-VIRYSPDVSMFASGDVNREAIVWDRVSREVKLK  528 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~-~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~  528 (609)
                      +.-+.++|.-..+|.+..+|.|.+..+.-..   ..++.-|...++ +++|.|||+++|.|-.||+|++-|++++.....
T Consensus        23 i~~~ewnP~~dLiA~~t~~gelli~R~n~qR---lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~   99 (665)
T KOG4640|consen   23 IKRIEWNPKMDLIATRTEKGELLIHRLNWQR---LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVS   99 (665)
T ss_pred             eEEEEEcCccchhheeccCCcEEEEEeccce---eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceec
Confidence            4556788988999999999999988876332   234444555666 999999999999999999999999988765443


Q ss_pred             eecCCCCceEEEEECC
Q 007283          529 NMLYHTARINCLAWSP  544 (609)
Q Consensus       529 ~~~~h~~~i~~l~~s~  544 (609)
                      ........|+++-|+|
T Consensus       100 ~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen  100 FLFSVETDISKGIWDR  115 (665)
T ss_pred             cccccccchheeeccc
Confidence            3334456677777764

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.67  E-value=0.65  Score=44.54  Aligned_cols=99  Identities=17%  Similarity=0.171  Sum_probs=55.9

Q ss_pred             CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEE----------eCCCcEEEEcCCCCceeeEEEeeccc-----
Q 007283           37 RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASA----------DVSGTVRIWGAHNDHVLKKEFRVLSG-----  101 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~----------~~d~~i~vWd~~~~~~~~~~~~~~~~-----  101 (609)
                      .+++++|..+++.+-...  .+-.-.+.+||||+.+.++          .....|.+||..+-.... +.....+     
T Consensus        17 ~rv~viD~d~~k~lGmi~--~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~-EI~iP~k~R~~~   93 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMID--TGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG-EIEIPPKPRAQV   93 (342)
T ss_dssp             EEEEEEETTTTEEEEEEE--EESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE-EEEETTS-B--B
T ss_pred             ceEEEEECCCCcEEEEee--cccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc-eEecCCcchhee
Confidence            378888987766543222  1234457789999988753          334579999998754221 2222211     


Q ss_pred             --ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283          102 --RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG  139 (609)
Q Consensus       102 --~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (609)
                        .....++|.||++++...-... .-+.+.+....+-+.
T Consensus        94 ~~~~~~~~ls~dgk~~~V~N~TPa-~SVtVVDl~~~kvv~  132 (342)
T PF06433_consen   94 VPYKNMFALSADGKFLYVQNFTPA-TSVTVVDLAAKKVVG  132 (342)
T ss_dssp             S--GGGEEE-TTSSEEEEEEESSS-EEEEEEETTTTEEEE
T ss_pred             cccccceEEccCCcEEEEEccCCC-CeEEEEECCCCceee
Confidence              2345789999999987653221 123444544444333

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.56  E-value=0.014  Score=58.88  Aligned_cols=74  Identities=16%  Similarity=0.345  Sum_probs=60.1

Q ss_pred             CceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE-EEEECCCCcEEEEEeCCCeEEEEEcCCCC
Q 007283          492 GAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN-CLAWSPNNSMVATGSLDTCVIIYEIDKPA  567 (609)
Q Consensus       492 ~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~-~l~~s~d~~~l~s~s~D~~v~vw~~~~~~  567 (609)
                      -.|.-+.|+|.-.++|.+-.+|.+.+..+. .+. +-....|...++ +++|-|||+.||.|-.||+|++-|+.++.
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qR-lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~   95 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELLIHRLN-WQR-LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGG   95 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEEEEEec-cce-eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCC
Confidence            356778899999999999999999888764 222 223344777777 99999999999999999999999998653

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.53  E-value=0.67  Score=42.96  Aligned_cols=198  Identities=12%  Similarity=0.202  Sum_probs=92.9

Q ss_pred             ccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceeeEEEeec-ccceeEEEECCCCCEEEEEECCCCcceEEEEE
Q 007283           54 GEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLKKEFRVL-SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM  131 (609)
Q Consensus        54 ~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  131 (609)
                      .+-..+++.++|.|+.+.|+ ..+..+.|--.+. +++++++ .... .+....+++..++.++++ .+.. . .+....
T Consensus        18 ~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~-i~l~g~~D~EgI~y~g~~~~vl~-~Er~-~-~L~~~~   92 (248)
T PF06977_consen   18 PGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRR-IPLDGFGDYEGITYLGNGRYVLS-EERD-Q-RLYIFT   92 (248)
T ss_dssp             TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEE-EE-SS-SSEEEEEE-STTEEEEE-ETTT-T-EEEEEE
T ss_pred             CCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEE-EeCCCCCCceeEEEECCCEEEEE-EcCC-C-cEEEEE
Confidence            34345699999999866554 5556666655554 3455443 3322 356788899888865554 3211 2 222333


Q ss_pred             cCCC-C--ee---EEE-----ecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eC--CCCceee-e------ccCccc
Q 007283          132 WDSG-T--NV---GEF-----DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EG--PPFKFKL-S------HRGHSN  189 (609)
Q Consensus       132 ~~~~-~--~~---~~~-----~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~--~~~~~~~-~------~~~h~~  189 (609)
                      .+.. .  ..   ..+     ..+...+..++|+|.+...+++.-.+- ..+|  +.  ....... .      ......
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKP-KRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSS-EEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCC-hhhEEEccccCccceeeccccccccccceec
Confidence            3211 1  11   111     134556899999998775555543332 3333  32  1111110 0      112345


Q ss_pred             ceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCc------cceEEEEECCCCCeEEEEeCCCcEEE
Q 007283          190 FVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHK------GSVYAVSWSPDGKQVLTASADKSAKV  259 (609)
Q Consensus       190 ~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~------~~V~~l~~spd~~~l~s~s~d~~i~i  259 (609)
                      .+..++|+|... +++....+..+.++| ..|+.+..+....+..      ..--.|+|.++|++.++. .-+..+.
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~  246 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR  246 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence            688999999854 555566677888888 5565544333222211      245689999998655544 4444333

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.39  E-value=0.12  Score=55.78  Aligned_cols=99  Identities=13%  Similarity=0.184  Sum_probs=65.8

Q ss_pred             EEEEeCCCcEEEEEecCCe--eeeeEEEe-cCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283          462 AIIGSQDGKLRVYSIRGDT--LTEEAVLE-KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN  538 (609)
Q Consensus       462 l~~gs~dg~i~iw~~~~~~--~~~~~~~~-~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~  538 (609)
                      -..|-.+..|..||.+-..  +....... ......+|++-+.+| ++|+||.+|.||+||..+.. ....+.+-..+|.
T Consensus       545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~-AKT~lp~lG~pI~  622 (794)
T PF08553_consen  545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKR-AKTALPGLGDPII  622 (794)
T ss_pred             eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccchh-hhhcCCCCCCCee
Confidence            4678888999999976322  21100000 123356788777666 67889999999999964422 2223445678999


Q ss_pred             EEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          539 CLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       539 ~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      +|+.+.||+||+. .-+..+.+.+.
T Consensus       623 ~iDvt~DGkwila-Tc~tyLlLi~t  646 (794)
T PF08553_consen  623 GIDVTADGKWILA-TCKTYLLLIDT  646 (794)
T ss_pred             EEEecCCCcEEEE-eecceEEEEEE
Confidence            9999999999764 44566777764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.31  E-value=0.16  Score=50.61  Aligned_cols=114  Identities=13%  Similarity=0.203  Sum_probs=73.6

Q ss_pred             CCceeEEEEcCCCCE-------EEEEeCCCcEEEEEecCCeeeeeEEEecCC----CceEEEEECCCCCEEEEEeCCCeE
Q 007283          447 RFPVTASAIAPDGSE-------AIIGSQDGKLRVYSIRGDTLTEEAVLEKHR----GAVSVIRYSPDVSMFASGDVNREA  515 (609)
Q Consensus       447 ~~~~~~~~~sp~g~~-------l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~----~~i~~v~~s~~~~~l~s~s~d~~v  515 (609)
                      ...++.+.+.|+++.       -++|-.|..|.-||.+-.......+-++|.    .--.|.+-..+ -++|+||.+|.|
T Consensus       375 ~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~s-G~IvvgS~~GdI  453 (644)
T KOG2395|consen  375 EDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTES-GYIVVGSLKGDI  453 (644)
T ss_pred             cCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeecCC-ceEEEeecCCcE
Confidence            334666667776653       356778888888987633322222334442    22445554444 478889999999


Q ss_pred             EEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       516 ~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      |+||..... ....+.+....|+.+..+.||++|+ |.-+..+.+-+.
T Consensus       454 RLYdri~~~-AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~t  499 (644)
T KOG2395|consen  454 RLYDRIGRR-AKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLIDT  499 (644)
T ss_pred             Eeehhhhhh-hhhcccccCCceeeEEeeccCcEEE-EecccEEEEEEE
Confidence            999973332 2234566778999999999999975 445666666654

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.018  Score=61.81  Aligned_cols=103  Identities=15%  Similarity=0.231  Sum_probs=65.0

Q ss_pred             CCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCC
Q 007283          501 PDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGG  580 (609)
Q Consensus       501 ~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~  580 (609)
                      ..+..+|.|+..|.+...|..+.-.....-..-+.+|++++|+.||+.++.|-.+|.|.+||+.....  .....-|..+
T Consensus        97 ~~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap  174 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAP  174 (1206)
T ss_pred             eeeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc--eeeeeecCCc
Confidence            34556777777777776664332110001112356899999999999999999999999999986432  2222233333


Q ss_pred             eEE----EEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          581 VYG----LAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       581 v~~----~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ..+    ..++..+.++++-.-|+  +|++.
T Consensus       175 ~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  175 VTGVIFVGRTSQNSKLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             cceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence            333    33445566777766665  77763

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.27  E-value=0.35  Score=49.20  Aligned_cols=134  Identities=10%  Similarity=0.178  Sum_probs=63.9

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-----------Ce
Q 007283           69 GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-----------TN  137 (609)
Q Consensus        69 g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-----------~~  137 (609)
                      |.+|...+.+ .|.+||+++++.+. .+.  -.+|..+.||++|++++.++++.    +.+...+..           ..
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~-~i~--v~~vk~V~Ws~~g~~val~t~~~----i~il~~~~~~~~~~~~~g~e~~  188 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIR-RID--VSAVKYVIWSDDGELVALVTKDS----IYILKYNLEAVAAIPEEGVEDA  188 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEE-EES--S-E-EEEEE-TTSSEEEEE-S-S----EEEEEE-HHHHHHBTTTB-GGG
T ss_pred             CcEEEEECCC-CEEEEEhhHcceee-EEe--cCCCcEEEEECCCCEEEEEeCCe----EEEEEecchhcccccccCchhc
Confidence            8888876554 89999999877543 232  23489999999999999887543    223333222           01


Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      ...+..-...|.+..|.-+  ..+.|...  .++++-.........+   ..++.=+.+.|+.+.+.....|+.+..+.+
T Consensus       189 f~~~~E~~~~IkSg~W~~d--~fiYtT~~--~lkYl~~Ge~~~i~~l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~l  261 (443)
T PF04053_consen  189 FELIHEISERIKSGCWVED--CFIYTTSN--HLKYLVNGETGIIAHL---DKPLYLLGYLPKENRLYLIDRDGNVISYEL  261 (443)
T ss_dssp             EEEEEEE-S--SEEEEETT--EEEEE-TT--EEEEEETTEEEEEEE----SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred             eEEEEEecceeEEEEEEcC--EEEEEcCC--eEEEEEcCCcceEEEc---CCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence            2222222567777888765  33444433  4555432211111111   234445556665556666666666666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.21  E-value=0.23  Score=49.73  Aligned_cols=114  Identities=18%  Similarity=0.330  Sum_probs=74.0

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCe-----------------------------------------eeeeEEEe
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDT-----------------------------------------LTEEAVLE  488 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~-----------------------------------------~~~~~~~~  488 (609)
                      |+.+.++++...+++|...|.|-+|....++                                         +.....+.
T Consensus         4 v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~~   83 (395)
T PF08596_consen    4 VTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLLD   83 (395)
T ss_dssp             EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE-
T ss_pred             EEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhee
Confidence            5666677777777777777777776653221                                         11112233


Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee-ecC------CCCceEEEEEC-----CCC---cEEEEEe
Q 007283          489 KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN-MLY------HTARINCLAWS-----PNN---SMVATGS  553 (609)
Q Consensus       489 ~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~------h~~~i~~l~~s-----~d~---~~l~s~s  553 (609)
                      ...++|++++.| |--++|.|..+|.+.|.|+++....... +..      ....|+++.|+     .|+   -.|+.|.
T Consensus        84 ~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT  162 (395)
T PF08596_consen   84 AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT  162 (395)
T ss_dssp             --S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE
T ss_pred             ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe
Confidence            347899999997 7779999999999999999877654432 111      23468888887     233   4788999


Q ss_pred             CCCeEEEEEcC
Q 007283          554 LDTCVIIYEID  564 (609)
Q Consensus       554 ~D~~v~vw~~~  564 (609)
                      ..|.+.+|.+-
T Consensus       163 n~G~v~~fkIl  173 (395)
T PF08596_consen  163 NSGNVLTFKIL  173 (395)
T ss_dssp             TTSEEEEEEEE
T ss_pred             CCCCEEEEEEe
Confidence            99999999884

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.19  E-value=1.7  Score=44.07  Aligned_cols=62  Identities=18%  Similarity=0.210  Sum_probs=41.2

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          195 RFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       195 ~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .++.+....+....++.+.+.+....+.   +    ...+.+..+++||+++++|.-..+|++.+...+
T Consensus       185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i----~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssD  246 (410)
T PF04841_consen  185 LLSSDRVVEILLANGETIYIIDENSFKQ---I----DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSD  246 (410)
T ss_pred             EeecCcceEEEEecCCEEEEEEcccccc---c----cCCCCeEEEEECCCCCEEEEEECCCCEEEEECc
Confidence            3555555555555666666444222111   1    124579999999999999999999999888654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.13  E-value=0.47  Score=43.62  Aligned_cols=189  Identities=13%  Similarity=0.122  Sum_probs=108.4

Q ss_pred             eecCCCCeEEEe-CC-----CEEEEEeCCCCcc-ccccccCCCCcEEEEECCCCCEEEEEeC------------------
Q 007283           23 SGHPKSNSILYT-NG-----RSVIILDLSNPLQ-VSIYGEHAYPATVARFSPNGEWIASADV------------------   77 (609)
Q Consensus        23 ~~~~~~~~l~~~-~~-----~~~~i~~~~~~~~-~~~~~~h~~~v~~~~~sp~g~~las~~~------------------   77 (609)
                      -+||||.+|+.+ |+     +.|=|||...+.+ +-.+..|.=.--.+.+.+||+.|+.+..                  
T Consensus       120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            378999887655 22     4666899865443 2334455433345678899999987632                  


Q ss_pred             CCcEEEEcCCCCce-eeEEEe--ecccceeEEEECCCCCEEEEEE---CCCCcceEEEEEcCCCCeeEEEe-------cC
Q 007283           78 SGTVRIWGAHNDHV-LKKEFR--VLSGRIDDLQWSPDGLRIVACG---DGKGKSLVRAFMWDSGTNVGEFD-------GH  144 (609)
Q Consensus        78 d~~i~vWd~~~~~~-~~~~~~--~~~~~v~~~~~spdg~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~-------~h  144 (609)
                      ...+-+-|..++.. .+.++.  .+.-.|..+...+||..++.+.   +..+...+ +-....++.+.-+.       .-
T Consensus       200 ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppL-vg~~~~g~~l~~~~~pee~~~~~  278 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPL-VGHFRKGEPLEFLDLPEEQTAAF  278 (366)
T ss_pred             CccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcc-eeeccCCCcCcccCCCHHHHHHH
Confidence            12344455444442 222333  2344688899999998888775   22211111 11112222222221       22


Q ss_pred             CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      ...|-+++.+.....+.+|........+||..++.....-.  .  .-+.-..+...-++..+.+|.++.++
T Consensus       279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~--l--~daaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAA--L--PDAAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccc--c--cccccceeccCceEEecCCceEEecc
Confidence            34677888887777778888888889999998876653321  1  11122223333366667778887763

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.10  E-value=1.6  Score=42.85  Aligned_cols=224  Identities=16%  Similarity=0.128  Sum_probs=105.2

Q ss_pred             eecCCCCeEEEeC----CCEEEEEeCCCCccccccccCC-CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283           23 SGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHA-YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR   97 (609)
Q Consensus        23 ~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~   97 (609)
                      .+.+||+.|++..    ...+.+.||.+++..+ +..+. ++.....++|+++.|.-...++.++--|+.+.+. ...+.
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q-LTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~  119 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ-LTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYE  119 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE----SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE-CccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEE
Confidence            3577887776642    3578889999887655 43332 3333466789999987766667888788887652 22344


Q ss_pred             ecccceeEEEE--CCCCCEEEEEECC-------------------CCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeC
Q 007283           98 VLSGRIDDLQW--SPDGLRIVACGDG-------------------KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS  156 (609)
Q Consensus        98 ~~~~~v~~~~~--spdg~~l~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (609)
                      ....-+....|  ..|+.+++.+-..                   +....+...+.+++. ...+-....-+..+.|+|.
T Consensus       120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~-~~~v~~~~~wlgH~~fsP~  198 (386)
T PF14583_consen  120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE-RKVVFEDTDWLGHVQFSPT  198 (386)
T ss_dssp             --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT---EEEEEEESS-EEEEEEETT
T ss_pred             CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc-eeEEEecCccccCcccCCC
Confidence            44444444455  4577777665311                   011111122222322 2222233455677899999


Q ss_pred             CCeEEEEe---cCCCe-EEEEeCC-CCceeeeccCc--ccceEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCcccc
Q 007283          157 RPFRIATC---GEDFL-VNFYEGP-PFKFKLSHRGH--SNFVNCVRFSPDGSKFISVS-----SDKKGIIYDGKTADKIG  224 (609)
Q Consensus       157 ~~~~i~t~---~~d~~-i~~~~~~-~~~~~~~~~~h--~~~v~~l~~s~dg~~l~s~~-----~d~~i~iwd~~~~~~~~  224 (609)
                      ++..|+=|   ..+.. -++|-+. .+........|  ...+..=-|.|||..|.--+     .+..|.-+|+.+++...
T Consensus       199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~  278 (386)
T PF14583_consen  199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR  278 (386)
T ss_dssp             EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEE
T ss_pred             CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCceE
Confidence            88766665   34432 3667421 11111122222  23455556899998665432     23345566777765422


Q ss_pred             ccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283          225 ELSPEDGHKGSVYAVSWSPDGKQVLTASAD  254 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d  254 (609)
                      ..     ........--++||++++--+.|
T Consensus       279 ~~-----~~p~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  279 LM-----EMPWCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             EE-----EE-SEEEEEE-TTSSEEEEEE--
T ss_pred             EE-----eCCceeeeEEcCCCCEEEecCCC
Confidence            11     11123455567899988766665

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.07  E-value=1.2  Score=48.18  Aligned_cols=130  Identities=17%  Similarity=0.141  Sum_probs=85.5

Q ss_pred             eEEEEEcCCCCeeEEEecCCcc-EEEEEEeeCCC------eEEEEecCCCeEEEEeCCCC--ceeee-c--cCcccceEE
Q 007283          126 LVRAFMWDSGTNVGEFDGHSRR-VLSCAFKPSRP------FRIATCGEDFLVNFYEGPPF--KFKLS-H--RGHSNFVNC  193 (609)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~------~~i~t~~~d~~i~~~~~~~~--~~~~~-~--~~h~~~v~~  193 (609)
                      .+.-.+...++.+..|+-|... |..+  .|+..      ..-..|=.+..+..||.+-.  ++... .  .......+|
T Consensus       505 ~ly~mDLe~GKVV~eW~~~~~~~v~~~--~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~  582 (794)
T PF08553_consen  505 KLYKMDLERGKVVEEWKVHDDIPVVDI--APDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSC  582 (794)
T ss_pred             ceEEEecCCCcEEEEeecCCCcceeEe--cccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCceE
Confidence            3455677788888888877643 5444  34321      11334445556777775532  22211 1  123456788


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       194 l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      ++-+.+| .||+|+.+|.|++||- .++...+.-  .+-..+|.+|..+.||++++..+ +..+-+++.
T Consensus       583 ~aTt~~G-~iavgs~~G~IRLyd~-~g~~AKT~l--p~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  583 FATTEDG-YIAVGSNKGDIRLYDR-LGKRAKTAL--PGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             EEecCCc-eEEEEeCCCcEEeecc-cchhhhhcC--CCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            8888888 5899999999999993 444444432  35668999999999999987776 567888875

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PRK02888 nitrous-oxide reductase; Validated

Probab=96.07  E-value=0.33  Score=50.50  Aligned_cols=150  Identities=14%  Similarity=0.057  Sum_probs=83.5

Q ss_pred             CceeEEeecCCCCeEEEeC-----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC---
Q 007283           17 GRGILISGHPKSNSILYTN-----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHN---   88 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~-----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~---   88 (609)
                      |+|-.+.++|+|.+++.++     |..+..-+..+......+.--+  +  -++.++|++...  .+.+|.+.|..+   
T Consensus       235 gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~--i--ea~vkdGK~~~V--~gn~V~VID~~t~~~  308 (635)
T PRK02888        235 GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIAR--I--EEAVKAGKFKTI--GGSKVPVVDGRKAAN  308 (635)
T ss_pred             CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHH--H--HHhhhCCCEEEE--CCCEEEEEECCcccc
Confidence            3445777778887765553     2223233222211111111000  0  134567877654  367899999877   


Q ss_pred             -CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe------------eEEEecCCccEEEEEEee
Q 007283           89 -DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN------------VGEFDGHSRRVLSCAFKP  155 (609)
Q Consensus        89 -~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~h~~~v~~~~~~p  155 (609)
                       +..+...+. -....-.+.+||||+++++.+...  ..+.+.++.+.+.            .++..- ...-...+|.+
T Consensus       309 ~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS--~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg  384 (635)
T PRK02888        309 AGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLS--PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDG  384 (635)
T ss_pred             CCcceEEEEE-CCCCccceEECCCCCEEEEeCCCC--CcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECC
Confidence             222222222 234567889999999999887433  3466777765331            122111 11123457888


Q ss_pred             CCCeEEEEecCCCeEEEEeCCC
Q 007283          156 SRPFRIATCGEDFLVNFYEGPP  177 (609)
Q Consensus       156 ~~~~~i~t~~~d~~i~~~~~~~  177 (609)
                      +|. ...|-.-|..+.-|+.+.
T Consensus       385 ~G~-aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        385 RGN-AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCC-EEEeEeecceeEEEehHH
Confidence            875 678888888899998654

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.02  E-value=0.46  Score=44.59  Aligned_cols=149  Identities=17%  Similarity=0.215  Sum_probs=84.1

Q ss_pred             ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE-eCCCCce
Q 007283          102 RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY-EGPPFKF  180 (609)
Q Consensus       102 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~-~~~~~~~  180 (609)
                      .+...++|+||+.++++..+.+.  ..++.+..+....... ....+..-.|++++. +.+....+....++ +...++.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~--~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~~  100 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGG--RSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGTG  100 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCC--CEEEEEcCCCcceeec-cCCccccccccCCCC-EEEEEcCCCceEEEEecCCCcc
Confidence            57889999999999988722222  2355555544333321 223667778899865 35544444444444 2222221


Q ss_pred             e---eeccCcccceEEEEEcCCCCEEEEEe---CCCcEEEEeCC---CC--ccc-cccCcCCCCccceEEEEECCCCCeE
Q 007283          181 K---LSHRGHSNFVNCVRFSPDGSKFISVS---SDKKGIIYDGK---TA--DKI-GELSPEDGHKGSVYAVSWSPDGKQV  248 (609)
Q Consensus       181 ~---~~~~~h~~~v~~l~~s~dg~~l~s~~---~d~~i~iwd~~---~~--~~~-~~~~~~~~h~~~V~~l~~spd~~~l  248 (609)
                      .   .....-...|+.+.+||||.++|...   .++.+.+--+.   .+  ..+ ............+..+.|.+++.++
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~  180 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLV  180 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEE
Confidence            1   11111112799999999999887766   24555554321   22  111 1111111234578999999999877


Q ss_pred             EEEeCC
Q 007283          249 LTASAD  254 (609)
Q Consensus       249 ~s~s~d  254 (609)
                      +.+...
T Consensus       181 V~~~~~  186 (253)
T PF10647_consen  181 VLGRSA  186 (253)
T ss_pred             EEeCCC
Confidence            766543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.03  Score=60.19  Aligned_cols=102  Identities=21%  Similarity=0.341  Sum_probs=72.7

Q ss_pred             CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc-
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR-  536 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~-  536 (609)
                      .+..+++|+..|.+..+|+.++ +.....-+.-.++|++++|+.||++++.|-.+|-|.+||...... ++.+..|..+ 
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~  175 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPV  175 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCcc
Confidence            4567899999999999888653 221111223457999999999999999999999999999877543 3344444444 


Q ss_pred             --eEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          537 --INCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       537 --i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                        |.-+.+..++..+.++..-|.  +|.+
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence              444555566777888888885  6754

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=95.92  E-value=1.7  Score=41.76  Aligned_cols=141  Identities=16%  Similarity=0.171  Sum_probs=76.0

Q ss_pred             CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCC
Q 007283           79 GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP  158 (609)
Q Consensus        79 ~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (609)
                      +.+.|.|.++++.+...-.   +-...+..||||+.+.+...        +|  +                         
T Consensus        17 ~rv~viD~d~~k~lGmi~~---g~~~~~~~spdgk~~y~a~T--------~~--s-------------------------   58 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT---GFLGNVALSPDGKTIYVAET--------FY--S-------------------------   58 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE---ESSEEEEE-TTSSEEEEEEE--------EE--E-------------------------
T ss_pred             ceEEEEECCCCcEEEEeec---ccCCceeECCCCCEEEEEEE--------EE--e-------------------------
Confidence            4677888877765443222   23344678999988776531        11  1                         


Q ss_pred             eEEEEecCCCeEEEEeCCCCceee--eccC-cc----cceEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCccccccCcC
Q 007283          159 FRIATCGEDFLVNFYEGPPFKFKL--SHRG-HS----NFVNCVRFSPDGSKFISV--SSDKKGIIYDGKTADKIGELSPE  229 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~~~~~~--~~~~-h~----~~v~~l~~s~dg~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~  229 (609)
                       |+.=|-..-.+.+||..+.+...  .+.+ |+    ......+++.||+++...  +-...|-|.|...++.+..+.  
T Consensus        59 -R~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~--  135 (342)
T PF06433_consen   59 -RGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEID--  135 (342)
T ss_dssp             -ETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEE--
T ss_pred             -ccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeec--
Confidence             11112222345677766654332  2221 11    122345788888876654  445677888888877665442  


Q ss_pred             CCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                        -.+ +..+--++ .+.+.+-|.||++.-..+..
T Consensus       136 --~PG-C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~  166 (342)
T PF06433_consen  136 --TPG-CWLIYPSG-NRGFSMLCGDGSLLTVTLDA  166 (342)
T ss_dssp             --GTS-EEEEEEEE-TTEEEEEETTSCEEEEEETS
T ss_pred             --CCC-EEEEEecC-CCceEEEecCCceEEEEECC
Confidence              112 22221122 24588888999999888864

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.74  E-value=0.036  Score=35.95  Aligned_cols=32  Identities=28%  Similarity=0.828  Sum_probs=29.0

Q ss_pred             CCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          533 HTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       533 h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      ....|.+++|+|...+||.|+.||.|.+++++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34569999999999999999999999999984

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.69  E-value=0.048  Score=35.41  Aligned_cols=34  Identities=15%  Similarity=0.286  Sum_probs=29.2

Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283          188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       188 ~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                      ...|.+++|+|...+||.++.+|.|.+|.. +++.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            456999999999999999999999999987 4443

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.49  E-value=1.3  Score=43.45  Aligned_cols=152  Identities=14%  Similarity=0.233  Sum_probs=87.8

Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe-eeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 007283          445 NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT-LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR  523 (609)
Q Consensus       445 ~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~-~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~  523 (609)
                      ....++.+++-- +|. ++++. .+.|++|++.... +.....+..+ ..+.++..  .+.+++.|+.-+.+.++.....
T Consensus        86 ~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~  159 (321)
T PF03178_consen   86 EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSV--FKNYILVGDAMKSVSLLRYDEE  159 (321)
T ss_dssp             EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEE--ETTEEEEEESSSSEEEEEEETT
T ss_pred             eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecce-EEEEEEec--cccEEEEEEcccCEEEEEEEcc
Confidence            345677777654 344 55544 5899999998877 6544433332 25566554  3569999998888887754332


Q ss_pred             c--eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCC-----Cc-ce-eEecccc-CCeEEE---EEcC--
Q 007283          524 E--VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA-----SS-RM-TIKGAHL-GGVYGL---AFTD--  588 (609)
Q Consensus       524 ~--~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~-----~~-~~-~~~~~h~-~~v~~~---~~s~--  588 (609)
                      .  ............++++.|-+|++.++.++.+|.+.++..+...     .. ++ ....-|. ..|+++   .+.+  
T Consensus       160 ~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~  239 (321)
T PF03178_consen  160 NNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS  239 (321)
T ss_dssp             TE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred             CCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence            2  2221222345568999998777789999999999999886311     11 22 2222343 346666   2222  


Q ss_pred             -C-C-----eEEEEeCCCcEE
Q 007283          589 -E-H-----SVVSSGEDACVR  602 (609)
Q Consensus       589 -~-~-----~l~s~s~D~~i~  602 (609)
                       + +     .++-++.+|.|-
T Consensus       240 ~~~~~~~~~~i~~~T~~G~Ig  260 (321)
T PF03178_consen  240 GSSESPNRPQILYGTVDGSIG  260 (321)
T ss_dssp             SSS-TTEEEEEEEEETTS-EE
T ss_pred             CCCcccccceEEEEecCCEEE
Confidence             1 1     366777888885

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.37  E-value=1.9  Score=38.55  Aligned_cols=139  Identities=13%  Similarity=0.105  Sum_probs=76.8

Q ss_pred             ceeEEEECCCCCEEEEEECCCCc----ceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEe--C
Q 007283          102 RIDDLQWSPDGLRIVACGDGKGK----SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--G  175 (609)
Q Consensus       102 ~v~~~~~spdg~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~  175 (609)
                      +...-..+|+|++.+..=.+.+.    .-..++.|..+..+..+...-.--..++|+.+.......-+.++.+.-||  .
T Consensus       110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~  189 (310)
T KOG4499|consen  110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAYDYDC  189 (310)
T ss_pred             ccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEeeeecCC
Confidence            34555678999986643222211    00112333322222111111112235677766665566667778887776  4


Q ss_pred             CCCce-----eeeccC-----cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283          176 PPFKF-----KLSHRG-----HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD  244 (609)
Q Consensus       176 ~~~~~-----~~~~~~-----h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd  244 (609)
                      +++..     +..++.     |. .--.++..-+|.+.++.-..+++...|+.+|+.+..+..   .+..|++++|---
T Consensus       190 ~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eikl---Pt~qitsccFgGk  264 (310)
T KOG4499|consen  190 PTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKL---PTPQITSCCFGGK  264 (310)
T ss_pred             CcccccCcceeEEeccCCCcCCC-CCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEc---CCCceEEEEecCC
Confidence            44322     222221     11 111234455777777777788999999999998877642   4678999999643

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.21  E-value=5.9  Score=43.22  Aligned_cols=148  Identities=12%  Similarity=0.198  Sum_probs=94.2

Q ss_pred             EEcCC-CCEEEEEe----------CCCcEEEEEecC-CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEcc
Q 007283          454 AIAPD-GSEAIIGS----------QDGKLRVYSIRG-DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV  521 (609)
Q Consensus       454 ~~sp~-g~~l~~gs----------~dg~i~iw~~~~-~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~  521 (609)
                      -+.-| +.++++|.          ..|.|.+|.+.. +.+.. .....-++.+.++.. -+|+++|.  -...+++|+..
T Consensus       781 ~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~-v~e~~v~Gav~aL~~-fngkllA~--In~~vrLye~t  856 (1096)
T KOG1897|consen  781 KFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLEL-VAETVVKGAVYALVE-FNGKLLAG--INQSVRLYEWT  856 (1096)
T ss_pred             eecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceee-eeeeeeccceeehhh-hCCeEEEe--cCcEEEEEEcc
Confidence            34444 66677764          247889998876 33321 111223455555432 36777775  45578888876


Q ss_pred             CCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeE-eccccCCeEEEEEcCCCeEEEEeCCCc
Q 007283          522 SREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTI-KGAHLGGVYGLAFTDEHSVVSSGEDAC  600 (609)
Q Consensus       522 ~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~l~s~s~D~~  600 (609)
                      ..+. +.....|..++..+...-.|..++.|+.-+.+.+-...........+ ..-|..+++++.+-++..++-+-++|.
T Consensus       857 ~~~e-Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylgae~~gN  935 (1096)
T KOG1897|consen  857 TERE-LRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLGAENSGN  935 (1096)
T ss_pred             ccce-ehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEeeccccc
Confidence            5532 22234577788899998899999999999988876654322122222 234677888999887776676777777


Q ss_pred             EEEEEc
Q 007283          601 VRVWRL  606 (609)
Q Consensus       601 i~~W~~  606 (609)
                      +.+=..
T Consensus       936 lf~v~~  941 (1096)
T KOG1897|consen  936 LFTVRK  941 (1096)
T ss_pred             EEEEEe
Confidence            766544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.20  E-value=2.4  Score=38.60  Aligned_cols=106  Identities=11%  Similarity=0.041  Sum_probs=65.2

Q ss_pred             EcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEe
Q 007283          196 FSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       196 ~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  274 (609)
                      ..+|.+ +++.|+..+.+.--|.++|+.+....    -..+|.+-+.- -|.+++.|+..|.+++-+.+.   +.....+
T Consensus        18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~i----lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~t---Gs~~w~f   89 (354)
T KOG4649|consen   18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAI----LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKT---GSQIWNF   89 (354)
T ss_pred             EecCCceEEEEecCCceEEEecCCCCcEEeehh----hCceeeeeeEE-ECCEEEEEEccCcEEEEEecc---hhheeee
Confidence            334433 56677778888888888887654331    12233332222 477899999999999998874   3333222


Q ss_pred             ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCC
Q 007283          275 TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND  312 (609)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  312 (609)
                      ...+.-   .....+.++...+.+++.|++.+..+...
T Consensus        90 ~~~~~v---k~~a~~d~~~glIycgshd~~~yalD~~~  124 (354)
T KOG4649|consen   90 VILETV---KVRAQCDFDGGLIYCGSHDGNFYALDPKT  124 (354)
T ss_pred             eehhhh---ccceEEcCCCceEEEecCCCcEEEecccc
Confidence            211110   11234556778899999999988887653

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.02  E-value=0.015  Score=58.70  Aligned_cols=187  Identities=13%  Similarity=0.089  Sum_probs=109.2

Q ss_pred             eEEEEecCCCeEEEEeCCCCce--eeeccCcccceEEEEEcCC-CCEEEEEe----CCCcEEEEeCCCCc--cccccCcC
Q 007283          159 FRIATCGEDFLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPD-GSKFISVS----SDKKGIIYDGKTAD--KIGELSPE  229 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~d-g~~l~s~~----~d~~i~iwd~~~~~--~~~~~~~~  229 (609)
                      -+++.|..+|.|-+-.......  .....+|.++-++++|++- .+.||.|-    .|..+.|||..+.-  ........
T Consensus        71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs  150 (783)
T KOG1008|consen   71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFS  150 (783)
T ss_pred             hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccc
Confidence            4578888888877754332111  1224568888999999885 44666553    35678999977651  11111101


Q ss_pred             CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCC-CCceEEEeccCCCCCccceEEEEE-EcCCeEEEEEcCCcEEE
Q 007283          230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN-HGKLKKTLTPSGSGGVDDMLVGCL-WQNDFLVIVSLGGTISI  307 (609)
Q Consensus       230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~i~~  307 (609)
                      .+.-....+++|-.+.+++.+|...+.+.++|++... ......+-..++        ..+. |.++++ +...+|.+.+
T Consensus       151 ~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG--------~tVdp~~~nY~-cs~~dg~iAi  221 (783)
T KOG1008|consen  151 SSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQG--------ITVDPFSPNYF-CSNSDGDIAI  221 (783)
T ss_pred             cccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhccc--------ceecCCCCCce-eccccCceee
Confidence            1123456689999899999999999999999986211 011111100010        1111 234444 4455999999


Q ss_pred             EeC-CCCCCCceeeeCC----CCCeEEEEEecCCCCEEEEEecC-CcEEEEec
Q 007283          308 FSA-NDLEKSPLQLSGH----MKNVTALTVLNIDPKVILSSSYD-GLIVKWIQ  354 (609)
Q Consensus       308 ~~~-~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~~t~s~d-g~i~~W~~  354 (609)
                      |+. ...+.+..++...    .+.+..+++++..+.++++.+.| ++|++.+.
T Consensus       222 wD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi  274 (783)
T KOG1008|consen  222 WDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDI  274 (783)
T ss_pred             ccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecc
Confidence            983 2222222222211    22488889987666778887755 67887754

>PRK13684 Ycf48-like protein; Provisional

Probab=94.96  E-value=4.1  Score=40.07  Aligned_cols=152  Identities=17%  Similarity=0.175  Sum_probs=79.9

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcE-EEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC
Q 007283           57 AYPATVARFSPNGEWIASADVSGTV-RIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG  135 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i-~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  135 (609)
                      .+.+..+++.|+|.+++.+.. |.+ +.++-. ++.-....+.-...+..+.+.|+++.+++ +.+.   .++...-+.+
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~-G~i~~s~~~g-g~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G---~~~~~s~d~G  245 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSR-GNFYSTWEPG-QTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGG---QIRFNDPDDL  245 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCC-ceEEEEcCCC-CCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCC---EEEEccCCCC
Confidence            456889999999988887754 433 333211 11111111223456889999999876554 3322   1211111222


Q ss_pred             CeeEEEec----CCccEEEEEEeeCCCeEEEEecCCCeEEEE-e-CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283          136 TNVGEFDG----HSRRVLSCAFKPSRPFRIATCGEDFLVNFY-E-GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       136 ~~~~~~~~----h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~-~-~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                      ..-.....    ....+..+.+.|++.  +..++.++.+..- | ..+++......+-....+.+.|..+++.++ ++..
T Consensus       246 ~sW~~~~~~~~~~~~~l~~v~~~~~~~--~~~~G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~  322 (334)
T PRK13684        246 ESWSKPIIPEITNGYGYLDLAYRTPGE--IWAGGGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQR  322 (334)
T ss_pred             CccccccCCccccccceeeEEEcCCCC--EEEEcCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCC
Confidence            11111111    123477888988775  3445556654432 2 233333221122224577788877766544 6678


Q ss_pred             CcEEEEeC
Q 007283          210 KKGIIYDG  217 (609)
Q Consensus       210 ~~i~iwd~  217 (609)
                      |.|.-|+.
T Consensus       323 G~il~~~~  330 (334)
T PRK13684        323 GVLLRYVG  330 (334)
T ss_pred             ceEEEecC
Confidence            88888764

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.94  E-value=0.071  Score=47.18  Aligned_cols=139  Identities=12%  Similarity=0.091  Sum_probs=75.0

Q ss_pred             EEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee-ecCCCCceEEEE
Q 007283          463 IIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN-MLYHTARINCLA  541 (609)
Q Consensus       463 ~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~h~~~i~~l~  541 (609)
                      -.-+.||.|+-+++....+...... -|...   ...-.-+..++.|..|+.+++|+.......... ..+-....+-+.
T Consensus        34 ~~~sa~~~v~~~~~~k~k~s~rse~-~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip  109 (238)
T KOG2444|consen   34 RATSADGLVRERKVRKHKESCRSER-FIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIP  109 (238)
T ss_pred             ccccCCcccccchhhhhhhhhhhhh-hhhcc---eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccc
Confidence            3446677777777654332211110 01111   011123567888999999999975411110000 001111122233


Q ss_pred             ECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecccc-CCeEEEEEc-CCCeEEEE--eCCCcEEEEEcc
Q 007283          542 WSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHL-GGVYGLAFT-DEHSVVSS--GEDACVRVWRLT  607 (609)
Q Consensus       542 ~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~-~~v~~~~~s-~~~~l~s~--s~D~~i~~W~~~  607 (609)
                      --.++.+..++..||.|+.|++...+  .....+.|. ..+.....+ .++.+.++  |.|..++.|++.
T Consensus       110 ~~~~~~~~c~~~~dg~ir~~n~~p~k--~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve  177 (238)
T KOG2444|consen  110 NGRDSSLGCVGAQDGRIRACNIKPNK--VLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE  177 (238)
T ss_pred             cccccceeEEeccCCceeeeccccCc--eeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence            33456678899999999999987533  344445565 344444433 55666665  778888888774

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=94.85  E-value=4  Score=39.38  Aligned_cols=134  Identities=13%  Similarity=0.043  Sum_probs=68.2

Q ss_pred             cEEEEECCCCCEEEEEeC------C---CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           60 ATVARFSPNGEWIASADV------S---GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~------d---~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      -+.....|+|++-++...      +   ..=.||.+.......+.+..+-..-..++||||++.|..+-..  ...+.-+
T Consensus       113 ~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~--~~~i~r~  190 (307)
T COG3386         113 PNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP--ANRIHRY  190 (307)
T ss_pred             CCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCC--CCeEEEE
Confidence            466788999998875333      1   1225676653222222233322334689999999877765322  2234444


Q ss_pred             EcCC--C----Ce-eEEEecCCccEEEEEEeeCCCeEEEEecCC-CeEEEEeCCCCceeeeccCcccceEEEEEc
Q 007283          131 MWDS--G----TN-VGEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNFYEGPPFKFKLSHRGHSNFVNCVRFS  197 (609)
Q Consensus       131 ~~~~--~----~~-~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s  197 (609)
                      .++.  +    +. ...+..+.+..-.++...+|.. .+++..+ ..+..|+.. ++......-....+++++|-
T Consensus       191 ~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~l-w~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~Fg  263 (307)
T COG3386         191 DLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNL-WVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFG  263 (307)
T ss_pred             ecCcccCccCCcceEEEccCCCCCCCceEEeCCCCE-EEecccCCceEEEECCC-CcEEEEEECCCCCCccceEe
Confidence            5542  1    11 1111122233334444555543 3233333 267777765 55555554444567777774

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=94.52  E-value=2  Score=44.00  Aligned_cols=149  Identities=13%  Similarity=0.240  Sum_probs=87.2

Q ss_pred             eecCCCCeEEEeCCCEEEEEeCC--CCccccccc-----cCCCCcEEEEECCCC----CEEEEEeCCCcEEEEcCCCC--
Q 007283           23 SGHPKSNSILYTNGRSVIILDLS--NPLQVSIYG-----EHAYPATVARFSPNG----EWIASADVSGTVRIWGAHND--   89 (609)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~i~~~~--~~~~~~~~~-----~h~~~v~~~~~sp~g----~~las~~~d~~i~vWd~~~~--   89 (609)
                      +.||.- -|+|+.|+.+++.++.  +++.  .|+     |.-+-|..+.|.|-+    --|...+-.+.|.||.+...  
T Consensus        18 AiHPvh-GlaWTDGkqVvLT~L~l~~gE~--kfGds~viGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~   94 (671)
T PF15390_consen   18 AIHPVH-GLAWTDGKQVVLTDLQLHNGEP--KFGDSKVIGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT   94 (671)
T ss_pred             hhcccc-ceEecCCCEEEEEeeeeeCCcc--ccCCccEeeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence            468863 3999999999998883  3322  122     222348889999853    24445566789999988621  


Q ss_pred             ---ceeeEEEeecccc----eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEE
Q 007283           90 ---HVLKKEFRVLSGR----IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIA  162 (609)
Q Consensus        90 ---~~~~~~~~~~~~~----v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~  162 (609)
                         +.+..+.-...++    -..+.|+|....|+.... .+.++..-.-.|...-...+ ...+.|.+..|.+||...++
T Consensus        95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~-~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTA-RDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             ccccceeeeeeeccCCcccCCCcccccCCCceEEEEec-CceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEE
Confidence               2222111122221    257899999877766542 22223222223333323334 44678999999999985444


Q ss_pred             EecCCCeEEEEeCC
Q 007283          163 TCGEDFLVNFYEGP  176 (609)
Q Consensus       163 t~~~d~~i~~~~~~  176 (609)
                      +.|..=.-++||..
T Consensus       173 AvGSsLHSyiWd~~  186 (671)
T PF15390_consen  173 AVGSSLHSYIWDSA  186 (671)
T ss_pred             EeCCeEEEEEecCc
Confidence            44554445678743

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.38  E-value=3.9  Score=37.25  Aligned_cols=60  Identities=17%  Similarity=0.027  Sum_probs=46.3

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceE-EEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          200 GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY-AVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       200 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      |++++.|...+.+++.+.++|+.+..+...    +.|. .....+++.++..++.|++.+.-|..
T Consensus        63 gdfVV~GCy~g~lYfl~~~tGs~~w~f~~~----~~vk~~a~~d~~~glIycgshd~~~yalD~~  123 (354)
T KOG4649|consen   63 GDFVVLGCYSGGLYFLCVKTGSQIWNFVIL----ETVKVRAQCDFDGGLIYCGSHDGNFYALDPK  123 (354)
T ss_pred             CCEEEEEEccCcEEEEEecchhheeeeeeh----hhhccceEEcCCCceEEEecCCCcEEEeccc
Confidence            567899999999999999999776554321    2222 33456789999999999999999875

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.35  E-value=4.5  Score=37.78  Aligned_cols=159  Identities=9%  Similarity=0.084  Sum_probs=88.0

Q ss_pred             ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEE-EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283           54 GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE-FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        54 ~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  132 (609)
                      .|-..+|+.+.|+|+.+.|.+..+.+.-.||--.+++.+.+. +++ -+...++++..+|++.++  |-+. ..+..+..
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~--dER~-~~l~~~~v  157 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIV--DERD-RALYLFTV  157 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEE--ehhc-ceEEEEEE
Confidence            345566999999999999988888888888876666655432 222 334566777777765554  2222 22334444


Q ss_pred             CCCCee----------EEEecCCccEEEEEEeeCCCeEEEEecCCC-eEEEEeCCCCcee-eeccCc-------ccceEE
Q 007283          133 DSGTNV----------GEFDGHSRRVLSCAFKPSRPFRIATCGEDF-LVNFYEGPPFKFK-LSHRGH-------SNFVNC  193 (609)
Q Consensus       133 ~~~~~~----------~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~-~i~~~~~~~~~~~-~~~~~h-------~~~v~~  193 (609)
                      +.++..          ....+-......++|+|.+...++.--.+- .|+.|+..+.... .....+       ...|+.
T Consensus       158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSg  237 (316)
T COG3204         158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSG  237 (316)
T ss_pred             cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccc
Confidence            433221          111222456788999998876555544442 3334442221111 111111       235778


Q ss_pred             EEEcCCCCEEEEEe-CCCcEEEEe
Q 007283          194 VRFSPDGSKFISVS-SDKKGIIYD  216 (609)
Q Consensus       194 l~~s~dg~~l~s~~-~d~~i~iwd  216 (609)
                      +.|.+....|++-| +++.+.-.|
T Consensus       238 l~~~~~~~~LLVLS~ESr~l~Evd  261 (316)
T COG3204         238 LEFNAITNSLLVLSDESRRLLEVD  261 (316)
T ss_pred             ceecCCCCcEEEEecCCceEEEEe
Confidence            88887655444444 444444444

>PHA02713 hypothetical protein; Provisional

Probab=94.03  E-value=7.1  Score=41.56  Aligned_cols=65  Identities=5%  Similarity=0.108  Sum_probs=36.0

Q ss_pred             CCCCEEEEEeCC------CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC--cEEEeeccc
Q 007283          198 PDGSKFISVSSD------KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK--SAKVWDISE  264 (609)
Q Consensus       198 ~dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~--~i~iwd~~~  264 (609)
                      -+|+..+.|+.+      ..+..||+.+.+.+..+.+..........+.+  +++..+.||.++  .+-.||+..
T Consensus       462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~  534 (557)
T PHA02713        462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFNVYT  534 (557)
T ss_pred             ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcCccc
Confidence            356777777754      23568998872223222222122222223333  678888888887  566677654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.87  E-value=1.6  Score=45.94  Aligned_cols=106  Identities=12%  Similarity=0.289  Sum_probs=72.5

Q ss_pred             EcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEE--CCCCCEEEEEeCCCeEEEEEccCCc--------
Q 007283          455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY--SPDVSMFASGDVNREAIVWDRVSRE--------  524 (609)
Q Consensus       455 ~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~--s~~~~~l~s~s~d~~v~iwd~~~~~--------  524 (609)
                      -|.-++..++-+.-.++.|||.+...+.....+ ...+.|..++|  .|||+.+.+.+..+.|.+|......        
T Consensus        37 gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w  115 (631)
T PF12234_consen   37 GSSIKKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSW  115 (631)
T ss_pred             ecccCcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccc
Confidence            344455555544455899999988876655555 45678999988  6899999999999999999642111        


Q ss_pred             eEEee--ecCCC-CceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          525 VKLKN--MLYHT-ARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       525 ~~~~~--~~~h~-~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      ..++.  +..|+ .+|.+..|.+||.+++.+  ++.+.|++-
T Consensus       116 ~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk  155 (631)
T PF12234_consen  116 APIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK  155 (631)
T ss_pred             ceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence            01111  22344 679999999999876544  456777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.79  E-value=5.8  Score=37.07  Aligned_cols=115  Identities=14%  Similarity=0.161  Sum_probs=81.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce---
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV---  525 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~---  525 (609)
                      .++++.++|+.+.|.+-.....--++=...+.+.....+.+. .....|.+..+|++.++--.++++.+..+.....   
T Consensus        87 nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~-~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~  165 (316)
T COG3204          87 NVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGF-SDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVIS  165 (316)
T ss_pred             cccceeeCCCcceEEEecCCCceEEEEecCCceEEEeccccc-CChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEe
Confidence            378899999999887777666666664445555444444442 3346678888999999999999998886544321   


Q ss_pred             ------EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          526 ------KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       526 ------~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                            .+......+.+...++|+|.+..|..+=.-+=+.||.+.
T Consensus       166 ~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         166 AKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             ccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence                  111111127788999999999999888888888888775

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=93.78  E-value=3.4  Score=41.35  Aligned_cols=110  Identities=16%  Similarity=0.258  Sum_probs=62.8

Q ss_pred             ecCCCccCcCceeEEeecCCCCeEEEeC-------------CCEEEEEeCCC--Ccc--ccccccCCCCcEEEEECCCCC
Q 007283            8 YTCVPSTERGRGILISGHPKSNSILYTN-------------GRSVIILDLSN--PLQ--VSIYGEHAYPATVARFSPNGE   70 (609)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~~~~~i~~~~~--~~~--~~~~~~h~~~v~~~~~sp~g~   70 (609)
                      ++-.|.-  ..|+.+++.++|+.++...             +.+|++++-.+  ++.  ...+...-.....+++.++| 
T Consensus         7 ~A~~p~~--~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-   83 (367)
T TIGR02604         7 FAAEPLL--RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-   83 (367)
T ss_pred             EECCCcc--CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-
Confidence            4444443  5677999999999887642             23676665432  221  22333223356889999999 


Q ss_pred             EEEEEeCCCcEEEEcCCCC-----c--eeeEEEeec----ccceeEEEECCCCCEEEEEECC
Q 007283           71 WIASADVSGTVRIWGAHND-----H--VLKKEFRVL----SGRIDDLQWSPDGLRIVACGDG  121 (609)
Q Consensus        71 ~las~~~d~~i~vWd~~~~-----~--~~~~~~~~~----~~~v~~~~~spdg~~l~~~~~~  121 (609)
                      ++++ +.+.-.++.|.+..     +  .+...+...    ......++|.|||...++.|+.
T Consensus        84 lyV~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~  144 (367)
T TIGR02604        84 VYVA-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNT  144 (367)
T ss_pred             EEEe-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccC
Confidence            5554 33433334454321     1  111112221    2346789999999988887753

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=93.53  E-value=8.3  Score=38.78  Aligned_cols=145  Identities=10%  Similarity=0.086  Sum_probs=80.7

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc-e---EE
Q 007283          452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE-V---KL  527 (609)
Q Consensus       452 ~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~-~---~~  527 (609)
                      .+..++||.+++.|..-..++-|+-- ... -......-...+.++.+.+++..++++ .++.+.. ....++ .   ..
T Consensus       243 ~v~~~~dG~~~~vg~~G~~~~s~d~G-~~~-W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l~~-S~d~G~~~~~~~f  318 (398)
T PLN00033        243 TVNRSPDGDYVAVSSRGNFYLTWEPG-QPY-WQPHNRASARRIQNMGWRADGGLWLLT-RGGGLYV-SKGTGLTEEDFDF  318 (398)
T ss_pred             eEEEcCCCCEEEEECCccEEEecCCC-Ccc-eEEecCCCccceeeeeEcCCCCEEEEe-CCceEEE-ecCCCCcccccce
Confidence            34567888877776544333344321 110 011122334578999999999988876 5565443 222221 0   11


Q ss_pred             eeecCC--CCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEe---ccccCCeEEEEEcCCCeEEEEeCCCcEE
Q 007283          528 KNMLYH--TARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIK---GAHLGGVYGLAFTDEHSVVSSGEDACVR  602 (609)
Q Consensus       528 ~~~~~h--~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~l~s~s~D~~i~  602 (609)
                      ......  ...++.+.|.+++..++ ++.+|.+.... +.++  -....   ..-....+.+.|.+++.....|.+|.|.
T Consensus       319 ~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s~-D~G~--tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il  394 (398)
T PLN00033        319 EEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRST-DGGK--SWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLL  394 (398)
T ss_pred             eecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEeC-CCCc--ceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEE
Confidence            212111  23589999998877655 45667666543 2221  11111   1223457899998766677788888887


Q ss_pred             EE
Q 007283          603 VW  604 (609)
Q Consensus       603 ~W  604 (609)
                      -|
T Consensus       395 ~~  396 (398)
T PLN00033        395 RY  396 (398)
T ss_pred             Ee
Confidence            65

>PHA02713 hypothetical protein; Provisional

Probab=93.26  E-value=1.1  Score=47.51  Aligned_cols=147  Identities=14%  Similarity=0.160  Sum_probs=76.5

Q ss_pred             CCCCEEEEEeCCC-----cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCC------------------
Q 007283          457 PDGSEAIIGSQDG-----KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR------------------  513 (609)
Q Consensus       457 p~g~~l~~gs~dg-----~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~------------------  513 (609)
                      -+|+..|+|+.++     ++..||..++.......+.........+.  -+|...+.|+.++                  
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~  427 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEED  427 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCccccccccccccccccccc
Confidence            3577778887764     47778876554332111111111112222  2678888887652                  


Q ss_pred             -----eEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC------CeEEEEEcCC-CCCcceeEeccccCCe
Q 007283          514 -----EAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD------TCVIIYEIDK-PASSRMTIKGAHLGGV  581 (609)
Q Consensus       514 -----~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D------~~v~vw~~~~-~~~~~~~~~~~h~~~v  581 (609)
                           ++..||..+.+....... ......+-...-+++..+.|+.+      ..|..||..+ .......... .....
T Consensus       428 ~~~~~~ve~YDP~td~W~~v~~m-~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~-~~r~~  505 (557)
T PHA02713        428 THSSNKVIRYDTVNNIWETLPNF-WTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTE-SRLSA  505 (557)
T ss_pred             ccccceEEEECCCCCeEeecCCC-CcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccC-ccccc
Confidence                 477788777665422111 11122211222367877777754      2467788765 3322222111 11222


Q ss_pred             EEEEEcCCCeEEEEeCCC--cEEEEEcc
Q 007283          582 YGLAFTDEHSVVSSGEDA--CVRVWRLT  607 (609)
Q Consensus       582 ~~~~~s~~~~l~s~s~D~--~i~~W~~~  607 (609)
                      .+++..++...+.||.|+  ++..+|..
T Consensus       506 ~~~~~~~~~iyv~Gg~~~~~~~e~yd~~  533 (557)
T PHA02713        506 LHTILHDNTIMMLHCYESYMLQDTFNVY  533 (557)
T ss_pred             ceeEEECCEEEEEeeecceeehhhcCcc
Confidence            344444778888899888  55555553

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.03  E-value=1.7  Score=42.90  Aligned_cols=109  Identities=17%  Similarity=0.207  Sum_probs=65.1

Q ss_pred             CccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCC
Q 007283          232 HKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAN  311 (609)
Q Consensus       232 h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~  311 (609)
                      ..++|.++.||+|.+.||..-.|.+|.+++...+++.. .-.....   .-...+.+++|....-++.-.+..+.+|...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l-~~~~~ck---~k~~~IlGF~W~~s~e~A~i~~~G~e~y~v~  140 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL-EYTQECK---TKNANILGFCWTSSTEIAFITDQGIEFYQVL  140 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh-HHHHHhc---cCcceeEEEEEecCeeEEEEecCCeEEEEEc
Confidence            45689999999999999999999999999875432221 1111111   0123356788876644433344446777655


Q ss_pred             CCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe
Q 007283          312 DLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS  344 (609)
Q Consensus       312 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s  344 (609)
                      .........+.|.-+|....+.....-.+.+.+
T Consensus       141 pekrslRlVks~~~nvnWy~yc~et~v~LL~t~  173 (657)
T KOG2377|consen  141 PEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT  173 (657)
T ss_pred             hhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence            443333444567777776666644333333333

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.96  E-value=5  Score=40.17  Aligned_cols=102  Identities=15%  Similarity=0.194  Sum_probs=56.3

Q ss_pred             eeEEEEcCCCCEEEEEe-----------CCC-cEEEEEecCC--eeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeE
Q 007283          450 VTASAIAPDGSEAIIGS-----------QDG-KLRVYSIRGD--TLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREA  515 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs-----------~dg-~i~iw~~~~~--~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v  515 (609)
                      ...+++.++|+++++-.           ..+ .|.+++-..+  ......++.........+++.++| ++++ +...-.
T Consensus        16 P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~~i~   93 (367)
T TIGR02604        16 PIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPPDIL   93 (367)
T ss_pred             CceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCCeEE
Confidence            56678899999877753           223 6777754322  222222333333456888999999 5544 344323


Q ss_pred             EEEEccC------C-ceEEeeecC----CCCceEEEEECCCCcEEEEEe
Q 007283          516 IVWDRVS------R-EVKLKNMLY----HTARINCLAWSPNNSMVATGS  553 (609)
Q Consensus       516 ~iwd~~~------~-~~~~~~~~~----h~~~i~~l~~s~d~~~l~s~s  553 (609)
                      ++.|...      . +..+..+..    +......++|.|||++.++-+
T Consensus        94 ~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        94 FLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             EEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence            3334322      1 111121211    245588999999998766544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.50  E-value=3.2  Score=41.81  Aligned_cols=66  Identities=15%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             EEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          148 VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       148 v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      ..|.+-..+|  .||+|+.+|.|++||-.-......+.+-..+|..+..+.||++|+ |..+..+.+-+
T Consensus       433 Fsc~aTT~sG--~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil-~Tc~tyLlLi~  498 (644)
T KOG2395|consen  433 FSCFATTESG--YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWIL-ATCKTYLLLID  498 (644)
T ss_pred             cceeeecCCc--eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEE-EecccEEEEEE
Confidence            3344444444  499999999999999643344445778888999999999999765 55666666655

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=92.46  E-value=0.44  Score=29.44  Aligned_cols=29  Identities=21%  Similarity=0.480  Sum_probs=20.9

Q ss_pred             CCCCcEEEEECCCCCEEE-EEeCC--CcEEEE
Q 007283           56 HAYPATVARFSPNGEWIA-SADVS--GTVRIW   84 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~la-s~~~d--~~i~vW   84 (609)
                      ..+.....+|||||++|+ ++..+  |.-.||
T Consensus         7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            345678899999999998 45556  777776

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=92.41  E-value=4.5  Score=40.64  Aligned_cols=113  Identities=15%  Similarity=0.244  Sum_probs=71.2

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE------------------------------------------Eeee
Q 007283          493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK------------------------------------------LKNM  530 (609)
Q Consensus       493 ~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~------------------------------------------~~~~  530 (609)
                      .|+.++|+++..-|++|...|.|.+|.....+..                                          ...+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            4788999999999999999999988853221100                                          0011


Q ss_pred             cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeE--e------ccccCCeEEEEEc-----CCC----eEE
Q 007283          531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTI--K------GAHLGGVYGLAFT-----DEH----SVV  593 (609)
Q Consensus       531 ~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~--~------~~h~~~v~~~~~s-----~~~----~l~  593 (609)
                      ...++.|++++.| |=-++|.|..+|.+.|-|+..+.  .+..  .      ...+..|+++.|+     ++.    +++
T Consensus        83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPa--vI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPA--VIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTE--EEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCe--EEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            1235789999998 66789999999999999996432  2111  1      1123457788774     222    366


Q ss_pred             EEeCCCcEEEEEccC
Q 007283          594 SSGEDACVRVWRLTP  608 (609)
Q Consensus       594 s~s~D~~i~~W~~~~  608 (609)
                      .|-..|.+.+|++-|
T Consensus       160 vGTn~G~v~~fkIlp  174 (395)
T PF08596_consen  160 VGTNSGNVLTFKILP  174 (395)
T ss_dssp             EEETTSEEEEEEEEE
T ss_pred             EEeCCCCEEEEEEec
Confidence            777889999998854

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=91.47  E-value=25  Score=38.50  Aligned_cols=22  Identities=18%  Similarity=0.338  Sum_probs=15.5

Q ss_pred             EEEEecCCCCEEEEEecCCcEE
Q 007283          329 ALTVLNIDPKVILSSSYDGLIV  350 (609)
Q Consensus       329 ~~~~~~~~~~~~~t~s~dg~i~  350 (609)
                      ++.+.+..+..++-+..+|++.
T Consensus       289 ~i~~l~~~p~~~via~~~G~l~  310 (717)
T PF10168_consen  289 SILCLPSLPPVLVIATSNGKLY  310 (717)
T ss_pred             eEEEecCCCCEEEEEecCCeEE
Confidence            3444455677888888888876

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=91.28  E-value=18  Score=36.47  Aligned_cols=147  Identities=18%  Similarity=0.272  Sum_probs=80.1

Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC---
Q 007283           60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT---  136 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---  136 (609)
                      ...+..++||++++.+....-.+-||--.. .=...-......+.++.|.+||..+++...+.   +  ++.-+.+.   
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~-~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~---l--~~S~d~G~~~~  314 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQP-YWQPHNRASARRIQNMGWRADGGLWLLTRGGG---L--YVSKGTGLTEE  314 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCCCCc-ceEEecCCCccceeeeeEcCCCCEEEEeCCce---E--EEecCCCCccc
Confidence            344567899999888866554555653211 00011112244688999999998777654432   1  22222222   


Q ss_pred             --eeEEEec--CCccEEEEEEeeCCCeEEEEecCCCeEEEEe--CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283          137 --NVGEFDG--HSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       137 --~~~~~~~--h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                        ......-  ....+..+.|.+++.  +..+|.++.+....  ..+++....-.+-...++.+.|.++++-++ .+.+|
T Consensus       315 ~~~f~~~~~~~~~~~l~~v~~~~d~~--~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~-~G~~G  391 (398)
T PLN00033        315 DFDFEEADIKSRGFGILDVGYRSKKE--AWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFV-LGNDG  391 (398)
T ss_pred             ccceeecccCCCCcceEEEEEcCCCc--EEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEE-EeCCc
Confidence              1121111  123488888988775  44445566555443  234333322122334577899988776555 55677


Q ss_pred             cEEEE
Q 007283          211 KGIIY  215 (609)
Q Consensus       211 ~i~iw  215 (609)
                      .|.-|
T Consensus       392 ~il~~  396 (398)
T PLN00033        392 VLLRY  396 (398)
T ss_pred             EEEEe
Confidence            76655

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=91.28  E-value=9.6  Score=40.44  Aligned_cols=103  Identities=20%  Similarity=0.322  Sum_probs=68.0

Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEEC--CCCcEEEEEeCCCeEEEEEcCC-----
Q 007283          493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS--PNNSMVATGSLDTCVIIYEIDK-----  565 (609)
Q Consensus       493 ~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s--~d~~~l~s~s~D~~v~vw~~~~-----  565 (609)
                      .+.-+.-|.-++..++.+.-.++.|||...............+.|.+++|.  ||++.+.+-+....|.++--.+     
T Consensus        31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~  110 (631)
T PF12234_consen   31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN  110 (631)
T ss_pred             CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence            344555566666666666667899999887776555544567889999995  7899999999999999985321     


Q ss_pred             --CCCc---ceeEecccc-CCeEEEEEc-CCCeEEEEe
Q 007283          566 --PASS---RMTIKGAHL-GGVYGLAFT-DEHSVVSSG  596 (609)
Q Consensus       566 --~~~~---~~~~~~~h~-~~v~~~~~s-~~~~l~s~s  596 (609)
                        +...   .+.+ ..|+ ..|.+..|. ++..++.+|
T Consensus       111 ~~p~w~~i~~i~i-~~~T~h~Igds~Wl~~G~LvV~sG  147 (631)
T PF12234_consen  111 KGPSWAPIRKIDI-SSHTPHPIGDSIWLKDGTLVVGSG  147 (631)
T ss_pred             CCcccceeEEEEe-ecCCCCCccceeEecCCeEEEEeC
Confidence              1100   1112 2344 468888888 555554444

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=91.27  E-value=0.058  Score=54.76  Aligned_cols=144  Identities=17%  Similarity=0.269  Sum_probs=92.1

Q ss_pred             CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC-CCEEEEEe----CCCeEEEEEccCCceEEe---e
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-VSMFASGD----VNREAIVWDRVSREVKLK---N  529 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s----~d~~v~iwd~~~~~~~~~---~  529 (609)
                      |...+++|..+|.|-+-.++...-....+..+|....++++|++- ...||.|-    .|..+.|||+.+.-...+   .
T Consensus        69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~  148 (783)
T KOG1008|consen   69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPL  148 (783)
T ss_pred             chhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccc
Confidence            445789999999999988765443333456778889999999875 45566552    456689999866411000   1


Q ss_pred             ecC-CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcC--CCeEEEEeCCCcEEEEE
Q 007283          530 MLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTD--EHSVVSSGEDACVRVWR  605 (609)
Q Consensus       530 ~~~-h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~l~s~s~D~~i~~W~  605 (609)
                      +.. ......+++|-.|.+++.+|..-..+.++|+.........+.   +..+..+..++  .+++.+- .|+.|-+||
T Consensus       149 fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn---Tk~vqG~tVdp~~~nY~cs~-~dg~iAiwD  223 (783)
T KOG1008|consen  149 FSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN---TKYVQGITVDPFSPNYFCSN-SDGDIAIWD  223 (783)
T ss_pred             cccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh---hhhcccceecCCCCCceecc-ccCceeecc
Confidence            111 334566888989999999999999999999863221111211   11222333332  2455544 499999998

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=90.26  E-value=26  Score=36.68  Aligned_cols=104  Identities=12%  Similarity=0.067  Sum_probs=57.9

Q ss_pred             EEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEE-----------------EeCCCeEEEEEccCC
Q 007283          461 EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS-----------------GDVNREAIVWDRVSR  523 (609)
Q Consensus       461 ~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s-----------------~s~d~~v~iwd~~~~  523 (609)
                      .+++++.+|.++.+|.+++...-.....     ...++.+| +..++.                 ...++.+.-.|..++
T Consensus       303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~-----~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG  376 (488)
T cd00216         303 AIVHAPKNGFFYVLDRTTGKLISARPEV-----EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG  376 (488)
T ss_pred             EEEEECCCceEEEEECCCCcEeeEeEee-----ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCC
Confidence            5777888999999998887654322221     11123344 222221                 123566777777766


Q ss_pred             ceEEeeecC-CC------Cce--EEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeE
Q 007283          524 EVKLKNMLY-HT------ARI--NCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTI  573 (609)
Q Consensus       524 ~~~~~~~~~-h~------~~i--~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~  573 (609)
                      +...+.-.. +.      ...  ..+..  .+..|+.++.||.|..+|..++. .+...
T Consensus       377 ~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~-~lW~~  432 (488)
T cd00216         377 KVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGK-ELWKF  432 (488)
T ss_pred             cEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCc-eeeEE
Confidence            654432211 00      011  11222  46778889999999999987754 44443

The alignment model contains an 8-bladed beta-propeller.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=89.60  E-value=30  Score=36.95  Aligned_cols=211  Identities=18%  Similarity=0.082  Sum_probs=92.9

Q ss_pred             CEEEEEeCCCCcccccccc-CCCCcEEEEECCCCCEEEEEeCC-C-----cEEEEcCCCCceeeEEEeecccceeEEEEC
Q 007283           37 RSVIILDLSNPLQVSIYGE-HAYPATVARFSPNGEWIASADVS-G-----TVRIWGAHNDHVLKKEFRVLSGRIDDLQWS  109 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~las~~~d-~-----~i~vWd~~~~~~~~~~~~~~~~~v~~~~~s  109 (609)
                      ..+..||..++.......- ++-...++++ -+|.+.++|+.| |     ++-.+|....+  -........+-..+...
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~-~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~--W~~~a~M~~~R~~~~v~  377 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAV-LNGKLYVVGGYDSGSDRLSSVERYDPRTNQ--WTPVAPMNTKRSDFGVA  377 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEE-ECCEEEEEccccCCCcccceEEEecCCCCc--eeccCCccCccccceeE
Confidence            3566788776644322111 1111223333 355667788777 3     45666665543  11111122111111111


Q ss_pred             C-CCCEEEEEECCCCcceEEEEEcCCCCeeEEEec-CCccEEEEEEeeCCCeEEEEecCCC------eEEEEeCCCCcee
Q 007283          110 P-DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG-HSRRVLSCAFKPSRPFRIATCGEDF------LVNFYEGPPFKFK  181 (609)
Q Consensus       110 p-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~~~~~p~~~~~i~t~~~d~------~i~~~~~~~~~~~  181 (609)
                      . +|...+..|.+.....-.+-.++..+......+ ........+.-.-+..+.+.||.++      .+..||..+.+..
T Consensus       378 ~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  378 VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             EECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            1 454444444332222223444444333333222 2223333333333445678888664      4567776554443


Q ss_pred             ee--ccCcccceEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC
Q 007283          182 LS--HRGHSNFVNCVRFSPDGSKFISVSSDKK-----GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD  254 (609)
Q Consensus       182 ~~--~~~h~~~v~~l~~s~dg~~l~s~~~d~~-----i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d  254 (609)
                      ..  +..-..... ++. -++...+.|+.|+.     +..||+.+.+... +.+.......+....+  +++..+.|+.|
T Consensus       458 ~~~~M~~~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~-v~~m~~~rs~~g~~~~--~~~ly~vGG~~  532 (571)
T KOG4441|consen  458 LIAPMNTRRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTM-VAPMTSPRSAVGVVVL--GGKLYAVGGFD  532 (571)
T ss_pred             ecCCcccccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeE-cccCccccccccEEEE--CCEEEEEeccc
Confidence            22  211111111 222 25667788887763     6678877655322 1111111222222222  45666777755


Q ss_pred             C
Q 007283          255 K  255 (609)
Q Consensus       255 ~  255 (609)
                      +
T Consensus       533 ~  533 (571)
T KOG4441|consen  533 G  533 (571)
T ss_pred             C
Confidence            4

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=89.44  E-value=9  Score=38.23  Aligned_cols=105  Identities=14%  Similarity=0.137  Sum_probs=51.1

Q ss_pred             eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECC--CCCEEEEE-eCCCeEEEEE-ccCCceEEeeec----------
Q 007283          466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP--DVSMFASG-DVNREAIVWD-RVSREVKLKNML----------  531 (609)
Q Consensus       466 s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~--~~~~l~s~-s~d~~v~iwd-~~~~~~~~~~~~----------  531 (609)
                      ..-.+|++||+...++....-+......+..|.|..  +..+-.+| -...+|..|- ...++...+...          
T Consensus       219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~  298 (461)
T PF05694_consen  219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGW  298 (461)
T ss_dssp             -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS
T ss_pred             cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcc
Confidence            345789999999887754444443334566788854  44433332 2344444442 233333221100          


Q ss_pred             -C---------CCCceEEEEECCCCcEEE-EEeCCCeEEEEEcCCCCCcc
Q 007283          532 -Y---------HTARINCLAWSPNNSMVA-TGSLDTCVIIYEIDKPASSR  570 (609)
Q Consensus       532 -~---------h~~~i~~l~~s~d~~~l~-s~s~D~~v~vw~~~~~~~~~  570 (609)
                       .         -..-|+.+..|.|.++|. +.-.+|.|+.||+..+...+
T Consensus       299 ~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pk  348 (461)
T PF05694_consen  299 ILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPK  348 (461)
T ss_dssp             ---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred             cccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCc
Confidence             0         023489999999999875 55689999999998655433

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.23  E-value=25  Score=37.56  Aligned_cols=107  Identities=20%  Similarity=0.343  Sum_probs=66.8

Q ss_pred             ecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 007283            8 YTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAH   87 (609)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~   87 (609)
                      |+|.|+.   -||++.-+|....-+|..-..+.||+.+.....+..-.|. .+..+.|+.+..+|. ...||++.|++.-
T Consensus        38 fa~Ap~g---GpIAV~r~p~~~~~~~~a~~~I~If~~sG~lL~~~~w~~~-~lI~mgWs~~eeLI~-v~k~g~v~Vy~~~  112 (829)
T KOG2280|consen   38 FACAPFG---GPIAVTRSPSKLVPLYSARPYIRIFNISGQLLGRILWKHG-ELIGMGWSDDEELIC-VQKDGTVHVYGLL  112 (829)
T ss_pred             EEecccC---CceEEEecccccccccccceeEEEEeccccchHHHHhcCC-CeeeecccCCceEEE-EeccceEEEeecc
Confidence            5677764   6789998885443345334578899987655544444444 678899998887665 5689999999886


Q ss_pred             CCceee--EEEeecccceeEEEECCCCCEEEEEE
Q 007283           88 NDHVLK--KEFRVLSGRIDDLQWSPDGLRIVACG  119 (609)
Q Consensus        88 ~~~~~~--~~~~~~~~~v~~~~~spdg~~l~~~~  119 (609)
                      ......  .-+......|..+.|...|-.+++.+
T Consensus       113 ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~  146 (829)
T KOG2280|consen  113 GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVS  146 (829)
T ss_pred             hhhhcccccccccccCceeEEEEecCceEEEecC
Confidence            432211  00112233466666666775555543

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.04  E-value=12  Score=38.01  Aligned_cols=92  Identities=15%  Similarity=0.256  Sum_probs=51.7

Q ss_pred             cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283          147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       147 ~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      .|..+..+|.|.. ++-.|.+|.+.++-...+.....+...+..|+|=.|.-+.+++ +                    -
T Consensus       105 eV~~vl~s~~GS~-VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~f-t--------------------s  162 (741)
T KOG4460|consen  105 EVYQVLLSPTGSH-VALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFF-T--------------------S  162 (741)
T ss_pred             EEEEEEecCCCce-EEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceee-c--------------------c
Confidence            4677888899986 5556667766655422221111222222334443333222211 1                    1


Q ss_pred             CcCCCCccceEEEEECCCC---CeEEEEeCCCcEEEeeccc
Q 007283          227 SPEDGHKGSVYAVSWSPDG---KQVLTASADKSAKVWDISE  264 (609)
Q Consensus       227 ~~~~~h~~~V~~l~~spd~---~~l~s~s~d~~i~iwd~~~  264 (609)
                          ...-.+..++|+|+.   ..|..-+.|..+|+||++.
T Consensus       163 ----s~~ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~  199 (741)
T KOG4460|consen  163 ----STSLTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSE  199 (741)
T ss_pred             ----CCceeeeeccccCCccCCceEEEEecCcEEEEEecCC
Confidence                111246678999975   4666777899999999874

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.03  E-value=6.9  Score=43.48  Aligned_cols=148  Identities=15%  Similarity=0.151  Sum_probs=85.4

Q ss_pred             ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe-----eEEEecC------CccEEEEEEeeCCCeEEEEecCCCeE
Q 007283          102 RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN-----VGEFDGH------SRRVLSCAFKPSRPFRIATCGEDFLV  170 (609)
Q Consensus       102 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~h------~~~v~~~~~~p~~~~~i~t~~~d~~i  170 (609)
                      ++..+...+|+...++.-... ...+..++...-..     -.-+..|      .....++.|.|.=+...+.+..|..|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsn-g~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSN-GEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecC-CceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            455566667776655554333 23444555542110     1111111      23345667777655567778888877


Q ss_pred             EEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--ccccccCcCCCCccceEEEEECCCCCeE
Q 007283          171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA--DKIGELSPEDGHKGSVYAVSWSPDGKQV  248 (609)
Q Consensus       171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~--~~~~~~~~~~~h~~~V~~l~~spd~~~l  248 (609)
                      .+..............-...++|++|+|.|+.++.|-..|++.=|...-.  ..+......  ....|.+++|-....++
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~--e~yrvl~v~Wl~t~efl  258 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVE--ENYRVLSVTWLSTQEFL  258 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcC--CCcceeEEEEecceeEE
Confidence            77643221111111123456899999999999999999999887765433  223222211  25789999998776666


Q ss_pred             EEEe
Q 007283          249 LTAS  252 (609)
Q Consensus       249 ~s~s  252 (609)
                      +.-+
T Consensus       259 vvy~  262 (1405)
T KOG3630|consen  259 VVYG  262 (1405)
T ss_pred             EEec
Confidence            6543

>PRK10115 protease 2; Provisional

Probab=88.47  E-value=43  Score=36.76  Aligned_cols=236  Identities=7%  Similarity=-0.061  Sum_probs=109.9

Q ss_pred             EEeecCCCCeEEEeC---C---CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC------CcEEEEcCCC
Q 007283           21 LISGHPKSNSILYTN---G---RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS------GTVRIWGAHN   88 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~---~---~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d------~~i~vWd~~~   88 (609)
                      .+..+|||+.|+|..   |   ..+.+.|+.++..+...-  .+.-..++|+|||+.|+-...+      ..|..+++.+
T Consensus       131 ~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i--~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt  208 (686)
T PRK10115        131 GMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL--DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT  208 (686)
T ss_pred             EEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc--cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence            456899999999873   3   268889998776322111  1112458999999877644332      2566677776


Q ss_pred             Cc-eeeEEEeeccccee-EEEECCCCCEEEEEECCCCcceEEEEEcC--CCCeeEEEecCCcc-EEEEEEeeCCCeEEEE
Q 007283           89 DH-VLKKEFRVLSGRID-DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRR-VLSCAFKPSRPFRIAT  163 (609)
Q Consensus        89 ~~-~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~h~~~-v~~~~~~p~~~~~i~t  163 (609)
                      +. .-...+....+... ....+.|+++++..........+.+++-+  .+.. ..+..+... ...+. +..+.+.+.+
T Consensus       209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~ly~~t  286 (686)
T PRK10115        209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEP-FVFLPRRKDHEYSLD-HYQHRFYLRS  286 (686)
T ss_pred             ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCc-eEEEECCCCCEEEEE-eCCCEEEEEE
Confidence            52 11122333333333 33345588877754433333333343322  2221 222222222 22222 3334433433


Q ss_pred             ec--CCCeEEEEeCC-CCceeeeccCcc-cceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccCcCCCCccceEE
Q 007283          164 CG--EDFLVNFYEGP-PFKFKLSHRGHS-NFVNCVRFSPDGSKFISVSSDKKGIIYDGKT-ADKIGELSPEDGHKGSVYA  238 (609)
Q Consensus       164 ~~--~d~~i~~~~~~-~~~~~~~~~~h~-~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~V~~  238 (609)
                      -.  ....+...+.. +.+....+.... ..|..+.+..+ .++++...++.-.++-... +..+..+..  .....+..
T Consensus       287 n~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l~~--~~~~~~~~  363 (686)
T PRK10115        287 NRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGIAF--DDPAYVTW  363 (686)
T ss_pred             cCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEecC--CCCceEee
Confidence            21  12223222332 222222222222 36777777733 4556666677665553322 222333210  11222333


Q ss_pred             EEEC--CCC-CeEEEEeC---CCcEEEeecc
Q 007283          239 VSWS--PDG-KQVLTASA---DKSAKVWDIS  263 (609)
Q Consensus       239 l~~s--pd~-~~l~s~s~---d~~i~iwd~~  263 (609)
                      +.++  +++ .++++.+.   -+.+..+|+.
T Consensus       364 ~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~  394 (686)
T PRK10115        364 IAYNPEPETSRLRYGYSSMTTPDTLFELDMD  394 (686)
T ss_pred             ecccCCCCCceEEEEEecCCCCCEEEEEECC
Confidence            3444  333 34444433   2566677765

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.43  E-value=8.8  Score=38.10  Aligned_cols=98  Identities=15%  Similarity=0.243  Sum_probs=66.4

Q ss_pred             cCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe---eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          489 KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK---NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       489 ~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~---~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      .-+|+|.++.||+|.+.+|+--.|.++-+.++...+..+.   ..+..+..|....|+.+ .-+|--+..| +.+|.+..
T Consensus        64 ~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~p  141 (657)
T KOG2377|consen   64 DDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLP  141 (657)
T ss_pred             cCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEch
Confidence            4567999999999999999999999999999754432221   12234556889999865 5566555554 88888765


Q ss_pred             CCCcceeEeccccCCeEEEEEcCC
Q 007283          566 PASSRMTIKGAHLGGVYGLAFTDE  589 (609)
Q Consensus       566 ~~~~~~~~~~~h~~~v~~~~~s~~  589 (609)
                      ++.. +.....|...|.=..|..+
T Consensus       142 ekrs-lRlVks~~~nvnWy~yc~e  164 (657)
T KOG2377|consen  142 EKRS-LRLVKSHNLNVNWYMYCPE  164 (657)
T ss_pred             hhhh-hhhhhhcccCccEEEEccc
Confidence            4422 2223447777766666633

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.35  E-value=3.2  Score=45.89  Aligned_cols=144  Identities=13%  Similarity=0.111  Sum_probs=83.2

Q ss_pred             CceeEEEEcCCCCEEEE--EeCCCcEEEEEecCCeeee---eEEEecC------CCceEEEEECCCCC-EEEEEeCCCeE
Q 007283          448 FPVTASAIAPDGSEAII--GSQDGKLRVYSIRGDTLTE---EAVLEKH------RGAVSVIRYSPDVS-MFASGDVNREA  515 (609)
Q Consensus       448 ~~~~~~~~sp~g~~l~~--gs~dg~i~iw~~~~~~~~~---~~~~~~h------~~~i~~v~~s~~~~-~l~s~s~d~~v  515 (609)
                      .++.-.++.+|+...++  .+.+-.|..||+..-....   ..-+..|      .....++.|+|.-. -.|+...|+.+
T Consensus       101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl  180 (1405)
T KOG3630|consen  101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL  180 (1405)
T ss_pred             ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence            44555666777665433  3333467889885322110   1112222      33456788888753 34556678888


Q ss_pred             EEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEec---cccCCeEEEEEc-CCCe
Q 007283          516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKG---AHLGGVYGLAFT-DEHS  591 (609)
Q Consensus       516 ~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~---~h~~~v~~~~~s-~~~~  591 (609)
                      ++.-+........ -.......+|++|||.|++++.|-..|++.-|....+.  +..+.+   -.-.+|.+|.|. ...+
T Consensus       181 ~V~~~~~~~~~v~-s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei--k~~ip~Pp~~e~yrvl~v~Wl~t~ef  257 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVT-SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI--KSEIPEPPVEENYRVLSVTWLSTQEF  257 (1405)
T ss_pred             hhhhhhhhhhhhc-ccCcccceeeEEeccccceeeEecCCCeEEEeecccce--eecccCCCcCCCcceeEEEEecceeE
Confidence            7765322111111 11234568999999999999999999999998754321  111111   013578888887 5555


Q ss_pred             EEE
Q 007283          592 VVS  594 (609)
Q Consensus       592 l~s  594 (609)
                      ++.
T Consensus       258 lvv  260 (1405)
T KOG3630|consen  258 LVV  260 (1405)
T ss_pred             EEE
Confidence            543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=87.99  E-value=18  Score=35.63  Aligned_cols=104  Identities=17%  Similarity=0.247  Sum_probs=56.0

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCee-eeeE----EEecCCCceEEEEECCC----CCEEEEEeCC--------
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL-TEEA----VLEKHRGAVSVIRYSPD----VSMFASGDVN--------  512 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~-~~~~----~~~~h~~~i~~v~~s~~----~~~l~s~s~d--------  512 (609)
                      .+.+++.|||+.+++ -+.|.|++++ ..+.. ....    +..........++++|+    +.+.++-+..        
T Consensus         4 P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    4 PRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             EEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             ceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            567899999987665 5699999998 33433 1111    11233457889999995    4444444421        


Q ss_pred             CeEEEEEccCC-------ceEEeeec---CCCCceEEEEECCCCcEEEEEeCC
Q 007283          513 REAIVWDRVSR-------EVKLKNML---YHTARINCLAWSPNNSMVATGSLD  555 (609)
Q Consensus       513 ~~v~iwd~~~~-------~~~~~~~~---~h~~~i~~l~~s~d~~~l~s~s~D  555 (609)
                      ..|.-|.....       +..+..+.   ...+.-..|+|.|||++.++.+..
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~  134 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG  134 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence            23333333222       11111111   133456679999999876665433

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=87.76  E-value=18  Score=33.37  Aligned_cols=141  Identities=20%  Similarity=0.273  Sum_probs=72.6

Q ss_pred             EEEcCCCCceeeEEEee-cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCC------ccEEEEEEe
Q 007283           82 RIWGAHNDHVLKKEFRV-LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHS------RRVLSCAFK  154 (609)
Q Consensus        82 ~vWd~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------~~v~~~~~~  154 (609)
                      -+||..+.+..  .+.. .+--+.+-+|-|||+.|.+.|+..+..-+|++.-........+....      +-=.+...-
T Consensus        49 ~~yD~~tn~~r--pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L  126 (243)
T PF07250_consen   49 VEYDPNTNTFR--PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL  126 (243)
T ss_pred             EEEecCCCcEE--eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence            57999887632  1222 22345566788999999888876655556665432200001111111      111123345


Q ss_pred             eCCCeEEEEecCC-CeEEEEeCCC--C-ceeeeccC------cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283          155 PSRPFRIATCGED-FLVNFYEGPP--F-KFKLSHRG------HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       155 p~~~~~i~t~~~d-~~i~~~~~~~--~-~~~~~~~~------h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      |||.. |+.||.. -...+|....  . .....+..      ....---+...|||++|+.+..+  -.|||..+.+.+.
T Consensus       127 ~DG~v-lIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~  203 (243)
T PF07250_consen  127 PDGRV-LIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVR  203 (243)
T ss_pred             CCCCE-EEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEe
Confidence            78875 5555544 4455554311  1 11111111      11122356778999988887754  4566877776555


Q ss_pred             ccC
Q 007283          225 ELS  227 (609)
Q Consensus       225 ~~~  227 (609)
                      .+.
T Consensus       204 ~lP  206 (243)
T PF07250_consen  204 TLP  206 (243)
T ss_pred             eCC
Confidence            553

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=87.01  E-value=2.5  Score=26.68  Aligned_cols=30  Identities=23%  Similarity=0.419  Sum_probs=25.0

Q ss_pred             ceEEEEEcCCC---CEEEEEeCCCcEEEEeCCC
Q 007283          190 FVNCVRFSPDG---SKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       190 ~v~~l~~s~dg---~~l~s~~~d~~i~iwd~~~  219 (609)
                      .+.++.|+|+.   .+|+.+-.-+.+-|+|.++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            57899999864   4888888889999999875

It contains a characteristic DLL sequence motif.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=86.92  E-value=2.7  Score=26.51  Aligned_cols=31  Identities=26%  Similarity=0.414  Sum_probs=25.9

Q ss_pred             CceEEEEECCCC---CEEEEEeCCCeEEEEEccC
Q 007283          492 GAVSVIRYSPDV---SMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       492 ~~i~~v~~s~~~---~~l~s~s~d~~v~iwd~~~  522 (609)
                      |.|.++.|||+.   .+|+-+-.-+.+.++|+.+
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            478999999864   4888888889999999764

It contains a characteristic DLL sequence motif.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.55  E-value=1.3  Score=47.42  Aligned_cols=58  Identities=26%  Similarity=0.410  Sum_probs=37.6

Q ss_pred             CeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEE-----------ECCCCCEEEEEeCCCcEEEEcCC
Q 007283           29 NSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVAR-----------FSPNGEWIASADVSGTVRIWGAH   87 (609)
Q Consensus        29 ~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~-----------~sp~g~~las~~~d~~i~vWd~~   87 (609)
                      .++.|. .|..+.+.....-.+ ..+.+|...++.++           +||||+.+|++..||.++.|.+.
T Consensus       196 ~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  196 VYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            334443 234444444333222 45667877666654           48999999999999999999775

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=86.29  E-value=1.2  Score=47.53  Aligned_cols=106  Identities=13%  Similarity=0.084  Sum_probs=62.5

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEE-----------EECCCCcEEEEEeCCCeEEEEEcCCCC
Q 007283          499 YSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL-----------AWSPNNSMVATGSLDTCVIIYEIDKPA  567 (609)
Q Consensus       499 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l-----------~~s~d~~~l~s~s~D~~v~vw~~~~~~  567 (609)
                      |-++..++..+..++++++.+..+...  +.+..|..+++.+           ..||||+.+|.++.||.+++|.+...+
T Consensus       191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g  268 (1283)
T KOG1916|consen  191 IAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITG  268 (1283)
T ss_pred             cccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeec
Confidence            445667888888888887665433222  2234566554432           369999999999999999999875322


Q ss_pred             C--cc-eeEecccc-CCeEEEEEcCC----------CeEEEEe-CCCcEEEEEc
Q 007283          568 S--SR-MTIKGAHL-GGVYGLAFTDE----------HSVVSSG-EDACVRVWRL  606 (609)
Q Consensus       568 ~--~~-~~~~~~h~-~~v~~~~~s~~----------~~l~s~s-~D~~i~~W~~  606 (609)
                      .  .+ +.....|. +.--|..|.+.          .++|+++ ..+-+++|.-
T Consensus       269 ~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  269 KIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             cccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeec
Confidence            0  11 11122344 22233335432          1355544 5777899964

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=86.19  E-value=70  Score=36.76  Aligned_cols=63  Identities=24%  Similarity=0.384  Sum_probs=35.7

Q ss_pred             EEEEEcCCCCEEEEE------------eCCCcEEEEeCCCCccccc-------cC-----cCCCCccceEEEEECCCCCe
Q 007283          192 NCVRFSPDGSKFISV------------SSDKKGIIYDGKTADKIGE-------LS-----PEDGHKGSVYAVSWSPDGKQ  247 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~------------~~d~~i~iwd~~~~~~~~~-------~~-----~~~~h~~~V~~l~~spd~~~  247 (609)
                      .+++++++|.+.++=            +.||+|.+.-.....|-..       ++     ...+|-....+++.+|||..
T Consensus       596 r~Iavg~~G~lyvaEsD~rriNrvr~~~tdg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~v  675 (1899)
T KOG4659|consen  596 RDIAVGTDGALYVAESDGRRINRVRKLSTDGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGDV  675 (1899)
T ss_pred             hceeecCCceEEEEeccchhhhheEEeccCceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCcE
Confidence            678999999766553            3455555553222111110       00     11245566788889999887


Q ss_pred             EEEEeCC
Q 007283          248 VLTASAD  254 (609)
Q Consensus       248 l~s~s~d  254 (609)
                      .+.-+..
T Consensus       676 ~IAD~gN  682 (1899)
T KOG4659|consen  676 IIADSGN  682 (1899)
T ss_pred             EEecCCc
Confidence            6665443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.15  E-value=5.3  Score=36.42  Aligned_cols=66  Identities=15%  Similarity=0.096  Sum_probs=49.6

Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEee------ec-------CCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          499 YSPDVSMFASGDVNREAIVWDRVSREVKLKN------ML-------YHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       499 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~------~~-------~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      +..++.++++-..+|.+++||+.+.+..++.      +.       .....|+.+.++.+|.-|++-+ +|....|+.+-
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L   96 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL   96 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence            4457888999999999999999887654432      21       3557799999999998777655 46778888654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=85.98  E-value=4  Score=37.25  Aligned_cols=57  Identities=18%  Similarity=0.350  Sum_probs=37.2

Q ss_pred             EECCCCCEEEEEeCCCcEEEEcCCCCceeeEE------Ee-------ecccceeEEEECCCCCEEEEEEC
Q 007283           64 RFSPNGEWIASADVSGTVRIWGAHNDHVLKKE------FR-------VLSGRIDDLQWSPDGLRIVACGD  120 (609)
Q Consensus        64 ~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~------~~-------~~~~~v~~~~~spdg~~l~~~~~  120 (609)
                      .+..++++|+.-..+|.+.+||+.+.+.....      +.       .....|..+..+.+|.-+++..+
T Consensus        17 ~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsn   86 (219)
T PF07569_consen   17 FLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSN   86 (219)
T ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeC
Confidence            35678999999999999999999987643222      11       12234555666666655555544

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=85.61  E-value=8.7  Score=40.90  Aligned_cols=140  Identities=16%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             CCCEEEEEeCCC-----cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCC------eEEEEEccCCceE
Q 007283          458 DGSEAIIGSQDG-----KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR------EAIVWDRVSREVK  526 (609)
Q Consensus       458 ~g~~l~~gs~dg-----~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~------~v~iwd~~~~~~~  526 (609)
                      +|...|+|+.||     ++..||..++.......+.........+  .-+|...+.|+.|+      ++..||..+....
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~  457 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWT  457 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCcee
Confidence            678888998887     4667776655443222222111222222  23788888888554      4568887776654


Q ss_pred             Eeeec-CCCCceEEEEECCCCcEEEEEeCCC-----eEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCc
Q 007283          527 LKNML-YHTARINCLAWSPNNSMVATGSLDT-----CVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC  600 (609)
Q Consensus       527 ~~~~~-~h~~~i~~l~~s~d~~~l~s~s~D~-----~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~  600 (609)
                      ..... ...... .++. -++++.+.|+.|+     +|..||..+.+...+.... +...-..++-.++...+.||.|+.
T Consensus       458 ~~~~M~~~R~~~-g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~-~~rs~~g~~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  458 LIAPMNTRRSGF-GVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMT-SPRSAVGVVVLGGKLYAVGGFDGN  534 (571)
T ss_pred             ecCCcccccccc-eEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCc-cccccccEEEECCEEEEEecccCc
Confidence            32211 111111 2222 2788888888887     3777886543322111111 122222233335566777887765


Q ss_pred             EE
Q 007283          601 VR  602 (609)
Q Consensus       601 i~  602 (609)
                      -.
T Consensus       535 ~~  536 (571)
T KOG4441|consen  535 NN  536 (571)
T ss_pred             cc
Confidence            43

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=85.58  E-value=7.9  Score=41.49  Aligned_cols=105  Identities=10%  Similarity=0.101  Sum_probs=71.1

Q ss_pred             CCCEEEEEeCCCcEEEEEecCCe------------------eeeeEEEecCCCceEEEEEC--CCCCEEEEEeCCCeEEE
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDT------------------LTEEAVLEKHRGAVSVIRYS--PDVSMFASGDVNREAIV  517 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~------------------~~~~~~~~~h~~~i~~v~~s--~~~~~l~s~s~d~~v~i  517 (609)
                      +.+.|+++..||.|.+|.++.-.                  ..+. ........++.+++.  ...+++|+++....|.+
T Consensus       113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~-f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV  191 (717)
T PF08728_consen  113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPF-FHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV  191 (717)
T ss_pred             CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCC-eEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence            45567888889999998652100                  0001 112234578999998  88899999999999988


Q ss_pred             EEccCCce--EEeeecCCCCceEEEEECCCC---c---EEEEEeCCCeEEEEEc
Q 007283          518 WDRVSREV--KLKNMLYHTARINCLAWSPNN---S---MVATGSLDTCVIIYEI  563 (609)
Q Consensus       518 wd~~~~~~--~~~~~~~h~~~i~~l~~s~d~---~---~l~s~s~D~~v~vw~~  563 (609)
                      |-......  .......|...|-+++|-++.   .   +|++++-.|.+.+|++
T Consensus       192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            86543211  111122366679999997754   2   7889999999999887

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=85.53  E-value=25  Score=38.46  Aligned_cols=95  Identities=17%  Similarity=0.231  Sum_probs=52.1

Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283          446 LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV  525 (609)
Q Consensus       446 ~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~  525 (609)
                      ..|.|..+.++|+|.++|..+..| |.|-.+... ......+++-...|.|                   +.+.+.... 
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r-~g~~~~~~~g~~~i~C-------------------rt~~v~~~~-  140 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR-WGKNGEFEDGKKEINC-------------------RTVPVDERF-  140 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc-cCccccccCCCcceeE-------------------EEEEechhh-
Confidence            346788999999999999988755 444444321 0000111111112222                   222211110 


Q ss_pred             EEeeecCCCCceEEEEECCC---CcEEEEEeCCCeEEEEEcCC
Q 007283          526 KLKNMLYHTARINCLAWSPN---NSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       526 ~~~~~~~h~~~i~~l~~s~d---~~~l~s~s~D~~v~vw~~~~  565 (609)
                         ....+...|..+.|+|.   +.+|+.=..|+++++||+..
T Consensus       141 ---~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  141 ---FTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             ---ccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence               01123456777888775   46777777888888888754

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=85.10  E-value=37  Score=32.66  Aligned_cols=150  Identities=13%  Similarity=0.168  Sum_probs=76.2

Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE
Q 007283          448 FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL  527 (609)
Q Consensus       448 ~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~  527 (609)
                      ..+..+..++||++++++..-.-+.-|+--....  ......-...|.++.|+||+.+.+.+ ..+.+++=+........
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w--~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w  221 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW--QPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETW  221 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS---EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccc--eEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccc
Confidence            4467777899999888886555556675321111  11222345789999999998887755 77888776511111111


Q ss_pred             ee----ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEec---cccCCeEEEEEcCCCeEEEEeCCCc
Q 007283          528 KN----MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKG---AHLGGVYGLAFTDEHSVVSSGEDAC  600 (609)
Q Consensus       528 ~~----~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~l~s~s~D~~  600 (609)
                      ..    ...-.-.+..++|.+++...|+|+. |++.+ ..+.++  -..-..   .-..-.+.+.|.+...-...|+||.
T Consensus       222 ~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l~~-S~DgGk--tW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~  297 (302)
T PF14870_consen  222 SEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTLLV-STDGGK--TWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGV  297 (302)
T ss_dssp             ---B-TTSS--S-EEEEEESSSS-EEEEEST-T-EEE-ESSTTS--S-EE-GGGTTSSS---EEEEEETTEEEEE-STTE
T ss_pred             ccccCCcccCceeeEEEEecCCCCEEEEeCC-ccEEE-eCCCCc--cceECccccCCCCceEEEEEcCCCceEEECCCcE
Confidence            11    1112334899999999887776654 44333 223221  111111   1133578999986566667899999


Q ss_pred             EEEE
Q 007283          601 VRVW  604 (609)
Q Consensus       601 i~~W  604 (609)
                      +.-|
T Consensus       298 ll~~  301 (302)
T PF14870_consen  298 LLRY  301 (302)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            8766

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=84.79  E-value=3.9  Score=25.06  Aligned_cols=25  Identities=28%  Similarity=0.409  Sum_probs=17.7

Q ss_pred             ecccceeEEEECCCCCEEEEEECCC
Q 007283           98 VLSGRIDDLQWSPDGLRIVACGDGK  122 (609)
Q Consensus        98 ~~~~~v~~~~~spdg~~l~~~~~~~  122 (609)
                      ...+.-...+|||||++|+.+++..
T Consensus         6 ~~~~~~~~p~~SpDGk~i~f~s~~~   30 (39)
T PF07676_consen    6 NSPGDDGSPAWSPDGKYIYFTSNRN   30 (39)
T ss_dssp             -SSSSEEEEEE-TTSSEEEEEEECT
T ss_pred             cCCccccCEEEecCCCEEEEEecCC
Confidence            3445667889999999999887543

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=84.68  E-value=37  Score=32.21  Aligned_cols=147  Identities=16%  Similarity=0.127  Sum_probs=76.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEec-c
Q 007283          198 PDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT-P  276 (609)
Q Consensus       198 ~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~  276 (609)
                      ..++.|+.|+.+| +.+++..........    .+...|..+...|+-+.|+.-+ |++++++++..-.......... .
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i----~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~   78 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRI----LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFP   78 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeE----eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccc
Confidence            3567899998888 888887322222222    1233499999999888777776 5999999986421111100000 0


Q ss_pred             ------CCCCCccceEEEE---EEcCCeEEEEEcCCcEEEEeCCCCCC----CceeeeCCCCCeEEEEEecCCCCEEEEE
Q 007283          277 ------SGSGGVDDMLVGC---LWQNDFLVIVSLGGTISIFSANDLEK----SPLQLSGHMKNVTALTVLNIDPKVILSS  343 (609)
Q Consensus       277 ------~~~~~~~~~~~~~---~~~~~~~~~~~~~g~i~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~~~t~  343 (609)
                            ..-.........+   ...+...+++.....+.+|.+.....    ...++. -...+..+++..   ..++-|
T Consensus        79 ~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~~---~~i~v~  154 (275)
T PF00780_consen   79 KSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFLG---NKICVG  154 (275)
T ss_pred             ccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEeC---CEEEEE
Confidence                  0000001111111   12234555566667888887765311    222322 235677777762   344444


Q ss_pred             ecCCcEEEEecC
Q 007283          344 SYDGLIVKWIQG  355 (609)
Q Consensus       344 s~dg~i~~W~~~  355 (609)
                      ..++ ..+-++.
T Consensus       155 ~~~~-f~~idl~  165 (275)
T PF00780_consen  155 TSKG-FYLIDLN  165 (275)
T ss_pred             eCCc-eEEEecC
Confidence            4333 3334443

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=84.23  E-value=49  Score=33.30  Aligned_cols=137  Identities=11%  Similarity=0.059  Sum_probs=61.1

Q ss_pred             EEEEEeCCCCccccccccC---CCCcEEEEECCCCCEEEEEeC--------------------CCcEEEEcCCCCceeeE
Q 007283           38 SVIILDLSNPLQVSIYGEH---AYPATVARFSPNGEWIASADV--------------------SGTVRIWGAHNDHVLKK   94 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h---~~~v~~~~~sp~g~~las~~~--------------------d~~i~vWd~~~~~~~~~   94 (609)
                      .+.++|-++-+........   ...-....+.|--+.++|.+.                    ..++.+||+.+.+.++ 
T Consensus       158 gf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q-  236 (461)
T PF05694_consen  158 GFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ-  236 (461)
T ss_dssp             EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE-
T ss_pred             cEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee-
Confidence            5666676554443333221   122355667888888887644                    2489999999876433 


Q ss_pred             EEeecc--cceeEEEECCC--CCEEEEEECCCCcceEEEEEcCCCC----eeEEEec-----C------------CccEE
Q 007283           95 EFRVLS--GRIDDLQWSPD--GLRIVACGDGKGKSLVRAFMWDSGT----NVGEFDG-----H------------SRRVL  149 (609)
Q Consensus        95 ~~~~~~--~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~-----h------------~~~v~  149 (609)
                      .+..-.  .....++|..|  ..+=++... -...+.+.+.-+.+.    .+.++..     -            ..-|+
T Consensus       237 ~idLg~~g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit  315 (461)
T PF05694_consen  237 TIDLGEEGQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT  315 (461)
T ss_dssp             EEES-TTEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred             EEecCCCCCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence            333322  23556777665  333222211 111122222211221    1122211     1            24478


Q ss_pred             EEEEeeCCCeEEEEecCCCeEEEEeCC
Q 007283          150 SCAFKPSRPFRIATCGEDFLVNFYEGP  176 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~  176 (609)
                      .+.+|.|+.++.+++=-.+.++.||+.
T Consensus       316 DI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  316 DILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             -EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             eEEEccCCCEEEEEcccCCcEEEEecC
Confidence            999999999988888888999999964

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=84.06  E-value=31  Score=30.93  Aligned_cols=58  Identities=28%  Similarity=0.468  Sum_probs=40.1

Q ss_pred             eCCCcEEEEcCCCCc-eeeEEEeecccceeEEEECCCCCEEEEEECCCCcc---eEEE-EEcCC
Q 007283           76 DVSGTVRIWGAHNDH-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS---LVRA-FMWDS  134 (609)
Q Consensus        76 ~~d~~i~vWd~~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~---~~~~-~~~~~  134 (609)
                      .....|.+|++...+ .+...|... +.|..+.++.-|.+|++.-......   .+|+ ..|+.
T Consensus        35 ~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~   97 (215)
T PF14761_consen   35 ASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRS   97 (215)
T ss_pred             cCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhh
Confidence            456679999998433 334456554 6789999999999999986544443   4454 45654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=82.51  E-value=42  Score=32.85  Aligned_cols=97  Identities=10%  Similarity=0.097  Sum_probs=47.9

Q ss_pred             CCCEEEEEeC-----CCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCe----EEEEEcCCCCCccee
Q 007283          502 DVSMFASGDV-----NREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTC----VIIYEIDKPASSRMT  572 (609)
Q Consensus       502 ~~~~l~s~s~-----d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~----v~vw~~~~~~~~~~~  572 (609)
                      ++.+.+.|+.     ...+..||+.+.+.....-.....+....+...++++.+.|+.++.    +.+||..+.....+.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~  202 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVA  202 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeEECC
Confidence            5666676664     2457788887766533211111122222333346788888876642    457776543211111


Q ss_pred             Ee-ccccC----CeEEEEEcCCCeEEEEeCC
Q 007283          573 IK-GAHLG----GVYGLAFTDEHSVVSSGED  598 (609)
Q Consensus       573 ~~-~~h~~----~v~~~~~s~~~~l~s~s~D  598 (609)
                      .. .++..    ...++...++.+++.||.+
T Consensus       203 ~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~  233 (323)
T TIGR03548       203 DPTTDSEPISLLGAASIKINESLLLCIGGFN  233 (323)
T ss_pred             CCCCCCCceeccceeEEEECCCEEEEECCcC
Confidence            00 01111    1223344466777888876

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=82.17  E-value=45  Score=34.75  Aligned_cols=122  Identities=14%  Similarity=0.199  Sum_probs=61.6

Q ss_pred             cceEEEEECCC----CCeEEEEeCCCcEEEeecccCC--CCceEEEeccCCCCCccceEEEEEEcCC--eEEEEEcCCcE
Q 007283          234 GSVYAVSWSPD----GKQVLTASADKSAKVWDISEDN--HGKLKKTLTPSGSGGVDDMLVGCLWQND--FLVIVSLGGTI  305 (609)
Q Consensus       234 ~~V~~l~~spd----~~~l~s~s~d~~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~i  305 (609)
                      ..|..++|.|-    -..|+......+|.+|.+....  ..++.-..+....+.+.-.--+|.|.++  .+.+.+....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            45899999985    3345566678899999985321  2222222111111122223346788755  33333333322


Q ss_pred             EEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       306 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                      -+++........+.--.-.+.|.|.+|-..+.++++..+..=.-.+||..
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCc
Confidence            23333222222221112345677777765555666665554456678643

>PHA03098 kelch-like protein; Provisional

Probab=81.45  E-value=31  Score=36.69  Aligned_cols=145  Identities=11%  Similarity=0.089  Sum_probs=66.6

Q ss_pred             CCCEEEEEeCCC-----cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC------CeEEEEEccCCceE
Q 007283          458 DGSEAIIGSQDG-----KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN------REAIVWDRVSREVK  526 (609)
Q Consensus       458 ~g~~l~~gs~dg-----~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d------~~v~iwd~~~~~~~  526 (609)
                      +++.++.|+.++     .+..||..++.......+......- ++ ..-++...+.|+.+      ..+..||..+.+..
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~  419 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWS  419 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence            566777777652     4666776655432211111111111 11 12367777777742      45788888766553


Q ss_pred             Eeee-cCCCCceEEEEECCCCcEEEEEeCCC--------eEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeC
Q 007283          527 LKNM-LYHTARINCLAWSPNNSMVATGSLDT--------CVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE  597 (609)
Q Consensus       527 ~~~~-~~h~~~i~~l~~s~d~~~l~s~s~D~--------~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~  597 (609)
                      .... ....... + +...+++.++.|+.+.        .+.+||..+.....+.... ..+.-.++...++..++.||.
T Consensus       420 ~~~~~p~~r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~  496 (534)
T PHA03098        420 KGSPLPISHYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLN-FPRINASLCIFNNKIYVVGGD  496 (534)
T ss_pred             ecCCCCccccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCC-cccccceEEEECCEEEEEcCC
Confidence            2211 1011111 1 2223677777776432        3777876543221111111 111111222226666677775


Q ss_pred             C-----CcEEEEEcc
Q 007283          598 D-----ACVRVWRLT  607 (609)
Q Consensus       598 D-----~~i~~W~~~  607 (609)
                      +     ..+..+|..
T Consensus       497 ~~~~~~~~v~~yd~~  511 (534)
T PHA03098        497 KYEYYINEIEVYDDK  511 (534)
T ss_pred             cCCcccceeEEEeCC
Confidence            4     355555543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=81.33  E-value=6.6  Score=39.50  Aligned_cols=91  Identities=15%  Similarity=0.229  Sum_probs=55.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEE---EEecC-C----ee--eeeEEEecCC-CceEEEE---E--------CCCCCEEEEE
Q 007283          452 ASAIAPDGSEAIIGSQDGKLRV---YSIRG-D----TL--TEEAVLEKHR-GAVSVIR---Y--------SPDVSMFASG  509 (609)
Q Consensus       452 ~~~~sp~g~~l~~gs~dg~i~i---w~~~~-~----~~--~~~~~~~~h~-~~i~~v~---~--------s~~~~~l~s~  509 (609)
                      .++++|+++.+|.+..+.-+.+   |+... +    ..  .....+.... ..|+++.   +        .||...++.|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            3577999999999987776655   53311 1    11  0011122111 3555544   3        2557899999


Q ss_pred             eCCCeEEEEEccCCceEEeeecCCCCceEEEEECC
Q 007283          510 DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP  544 (609)
Q Consensus       510 s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~  544 (609)
                      ..+|.+++|.. ++...+.+ ..|..+|..++.-.
T Consensus        86 ~ssG~vrfyte-~G~LL~~Q-~~h~~pV~~ik~~~  118 (415)
T PF14655_consen   86 TSSGYVRFYTE-NGVLLLSQ-LLHEEPVLKIKCRS  118 (415)
T ss_pred             ecccEEEEEec-cchHHHHH-hcCccceEEEEecc
Confidence            99999999985 44333332 34788888877753

>PHA02790 Kelch-like protein; Provisional

Probab=81.16  E-value=36  Score=35.57  Aligned_cols=143  Identities=10%  Similarity=0.041  Sum_probs=70.8

Q ss_pred             CCCCEEEEEeCCC--cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCC---eEEEEEccCCceEEeeec
Q 007283          457 PDGSEAIIGSQDG--KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR---EAIVWDRVSREVKLKNML  531 (609)
Q Consensus       457 p~g~~l~~gs~dg--~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~~  531 (609)
                      -+|...++|+.++  .+..|+...+.......+.........+  .-+|+..+.|+.++   ++..||..+.........
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m  394 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPST  394 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCC
Confidence            3567777777543  5677776544332212221111111122  23788888887653   466788776655432111


Q ss_pred             C-CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCC-----CcEEEEE
Q 007283          532 Y-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGED-----ACVRVWR  605 (609)
Q Consensus       532 ~-h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D-----~~i~~W~  605 (609)
                      . .......+  .-+++..+.|+   .+.+||..+.......... +.+.-.+++..+++..+.||.+     .++..+|
T Consensus       395 ~~~r~~~~~~--~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~-~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        395 YYPHYKSCAL--VFGRRLFLVGR---NAEFYCESSNTWTLIDDPI-YPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             CCccccceEE--EECCEEEEECC---ceEEecCCCCcEeEcCCCC-CCccccEEEEECCEEEEECCcCCCcccceEEEEE
Confidence            1 11111122  33677777774   5778887643322111111 1111123444477777778764     3566666


Q ss_pred             cc
Q 007283          606 LT  607 (609)
Q Consensus       606 ~~  607 (609)
                      ..
T Consensus       469 ~~  470 (480)
T PHA02790        469 NR  470 (480)
T ss_pred             CC
Confidence            54

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=81.13  E-value=85  Score=34.09  Aligned_cols=61  Identities=23%  Similarity=0.334  Sum_probs=43.5

Q ss_pred             cccCCCCcEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEE
Q 007283           53 YGEHAYPATVARFSPNGEWIASADVSG--TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVA  117 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~~las~~~d~--~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~  117 (609)
                      +..+...+..+.++|+|++++..+.++  ..++|....+.    ....+...+....|+|+|..++.
T Consensus        55 ~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l~~~~g----~~~~~~~~v~~~~~~~~g~~~~~  117 (620)
T COG1506          55 LLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYLVDVGG----LITKTAFGVSDARWSPDGDRIAF  117 (620)
T ss_pred             ccccCCcccccccCCCCCEEEEEeccCCCcceEEEEecCC----ceeeeecccccceeCCCCCeEEE
Confidence            444667789999999999999776433  45677654331    22334556888999999998887

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=81.09  E-value=8.9  Score=40.87  Aligned_cols=34  Identities=21%  Similarity=0.373  Sum_probs=26.5

Q ss_pred             CcEEEEECC----CCCEEEEEeCCCcEEEEcCCCCcee
Q 007283           59 PATVARFSP----NGEWIASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        59 ~v~~~~~sp----~g~~las~~~d~~i~vWd~~~~~~~   92 (609)
                      .+..+++++    +..+|++.+.|+++|+||+.+++++
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~  253 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCL  253 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEE
Confidence            456677777    7789999999999999999998753

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=80.73  E-value=52  Score=31.15  Aligned_cols=116  Identities=11%  Similarity=0.213  Sum_probs=60.6

Q ss_pred             eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEec----------CCCceEEEEECCCCCEEEEEe
Q 007283          441 VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEK----------HRGAVSVIRYSPDVSMFASGD  510 (609)
Q Consensus       441 ~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~----------h~~~i~~v~~s~~~~~l~s~s  510 (609)
                      ...+.....+..+++.  +..++.|..++ ..+.|+.++..........          ...++..+..+ ++.+|+.  
T Consensus       132 ~ke~~lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~--  205 (275)
T PF00780_consen  132 LKEISLPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLC--  205 (275)
T ss_pred             eEEEEcCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEE--
Confidence            3444555667777777  56677776444 7788887554322111111          12245555554 4566664  


Q ss_pred             CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          511 VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       511 ~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      .|....+-|..+.......+. =.....++++.  ..+|+.-. ++.|.||++.++
T Consensus       206 ~~~~g~fv~~~G~~~r~~~i~-W~~~p~~~~~~--~pyli~~~-~~~iEV~~~~~~  257 (275)
T PF00780_consen  206 YDNIGVFVNKNGEPSRKSTIQ-WSSAPQSVAYS--SPYLIAFS-SNSIEVRSLETG  257 (275)
T ss_pred             ecceEEEEcCCCCcCcccEEE-cCCchhEEEEE--CCEEEEEC-CCEEEEEECcCC
Confidence            344445555443221111111 12345566663  34665544 466999999864

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	609
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		3e-82
1pgu_A	615	Yeast Actin Interacting Protein 1 (aip1), Se-met Pr		1e-64
1pi6_A	615	Yeast Actin Interacting Protein 1 (Aip1), Orthorhom		2e-64
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-28
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-19
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		6e-13
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-04
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		6e-13
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-04
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-19
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-13
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		3e-04
2g99_A	308	Structural Basis For The Specific Recognition Of Me		4e-19
2g99_A	308	Structural Basis For The Specific Recognition Of Me		7e-13
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-04
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		4e-19
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		7e-13
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		3e-04
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		4e-19
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		8e-13
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-04
2h9l_A	329	Wdr5delta23 Length = 329		4e-19
2h9l_A	329	Wdr5delta23 Length = 329		7e-13
2h9l_A	329	Wdr5delta23 Length = 329		3e-04
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-19
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		8e-13
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		4e-04
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		4e-19
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		8e-13
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		4e-19
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		5e-13
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		3e-04
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		4e-19
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-13
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		3e-04
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		5e-19
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		7e-13
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		3e-04
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-19
2gnq_A	336	Structure Of Wdr5 Length = 336		5e-13
2gnq_A	336	Structure Of Wdr5 Length = 336		3e-04
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		6e-19
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		8e-13
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		3e-04
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		7e-19
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		1e-12
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		6e-04
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-18
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		1e-11
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-04
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-18
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		1e-11
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		4e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		3e-12
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-11
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		2e-11
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		5e-12
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		6e-09
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		5e-12
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		6e-09
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		4e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		5e-11
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-09
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-06
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		2e-05
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		3e-09
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		4e-05
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		4e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-09
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		4e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		7e-09
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		7e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		8e-09
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		1e-08
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		1e-08
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-08
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		6e-08
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		2e-06
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		8e-08
1r5m_A	425	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-05
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		5e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		8e-05
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		6e-07
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		1e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		9e-07
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		9e-07
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		2e-06
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-04
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		2e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		3e-06
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-04
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		3e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		3e-06
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-04
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-05
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-06
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		7e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		8e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		8e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		8e-06
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		1e-05
3dxk_C	372	Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND IN		1e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		1e-04
1k8k_C	372	Crystal Structure Of Arp23 COMPLEX Length = 372		2e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		4e-05
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		7e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		4e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		4e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		1e-04
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		5e-05
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		6e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		9e-05
3zwl_B	369	Structure Of Eukaryotic Translation Initiation Fact		2e-04
3mmy_A	368	Structural And Functional Analysis Of The Interacti		2e-04
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		3e-04

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score =  303 bits (775), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 190/621 (30%), Positives = 331/621 (53%), Gaps = 27/621 (4%)
Query: 1   MPQLAET--YTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAY 58
           M + ++T  +  +P T RG  +++   P  + I Y NG SV  + + +     IY EH++
Sbjct: 1   MSEFSQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH 60
Query: 59  PATVARFSPNGEWIASADVSGTVRIWGA-HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVA 117
             TVA+ SP+G + AS DV G VRIW      H+LK    V SG + D+ W  +  RI A
Sbjct: 61  QTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAA 120
Query: 118 CGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP 177
            G+G+ +     F++D+GT+ G   G +R + S  FKPSRPFRI +  +D  V  +EGPP
Sbjct: 121 VGEGRER-FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPP 179
Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED----GHK 233
           FKFK +   H+ FV+ VR++PDGS F S   D   ++Y+G    K G    +      H 
Sbjct: 180 FKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239
Query: 234 GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293
           GSV+ ++WSPDG ++ +ASADK+ K+W+++     K++KT+ P G+  ++D  +G +W  
Sbjct: 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTI-PVGT-RIEDQQLGIIWTK 294
Query: 294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI 353
             LV +S  G I+ F   +L        GH K +TAL+  + D K + S+  +G I  W 
Sbjct: 295 QALVSISANGFIN-FVNPELGSIDQVRYGHNKAITALSS-SADGKTLFSADAEGHINSWD 352
Query: 354 QGIGYGGKLQRKENSQI--KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSI--DIGS 409
              G   ++    ++ +        + ++ T  +D+ +  V   G     + ++   + S
Sbjct: 353 ISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSS 412
Query: 410 QPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDG 469
           QP  L+V+      V        +   G   ++ + + +  +  A++ D     +G QD 
Sbjct: 413 QPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVPISYNSSCVALSNDKQFVAVGGQDS 470
Query: 470 KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN 529
           K+ VY + G +++E   +  H   ++ + +S + +   + D +R+ I +  V+   +L +
Sbjct: 471 KVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQSRKVIPY-SVANNFELAH 528
Query: 530 M---LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLA 585
                +HTA++ C++WSP+N  +ATGSLD  VI++ ++KP+   + IKGAH +  V  + 
Sbjct: 529 TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI 588
Query: 586 FTDEHSVVSSGEDACVRVWRL 606
           + +E ++VS+G+D+ ++ W +
Sbjct: 589 WLNETTIVSAGQDSNIKFWNV 609

>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein, Monoclinic Crystal Form Length = 615

Iteration: 1
 Score =  244 bits (622), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 195/634 (30%), Positives = 309/634 (48%), Gaps = 58/634 (9%)
Query: 4   LAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSN-----PLQVSIYGEHAY 58
           L E     PST+R     +S  P +N+I Y  G+S  +  L +     P  V   G  + 
Sbjct: 6   LKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSS 65
Query: 59  PATVARFSP--NGEWIASADVSGTVRIWGAHNDHV-------LKKEFRVLSGRIDDLQWS 109
             T  +FSP    +++ S D SG V +WG   D         +K EF+VL+G I D+ W 
Sbjct: 66  VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 125
Query: 110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL 169
            +G R+   G+G+    V    WDSG ++GE  GHS+R+ +C  K SRP R  T G+D  
Sbjct: 126 FEGRRLCVVGEGRDNFGV-FISWDSGNSLGEVSGHSQRINACHLKQSRPXRSXTVGDDGS 184
Query: 170 VNFYEGPPFKFKLSHRGH---SNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGE 225
           V FY+GPPFKF  S R H    +FV  V FSPD  +F I+V SD+K   +DGK+ + +  
Sbjct: 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244
Query: 226 LS-PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD 284
           +   ++  +G ++A+SW  D ++  T  AD + +VWD++     + K TL     G    
Sbjct: 245 IEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ-KWTLDKQQLGNQQV 302
Query: 285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344
            +V     N  ++ +SL GT++ +     E     +SGH K +TALTV   +P  ++S S
Sbjct: 303 GVVAT--GNGRIISLSLDGTLNFYELGHDEVLK-TISGHNKGITALTV---NP--LISGS 354
Query: 345 YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANS 404
           YDG I +W     +    Q   N  +    +  +E  +  +D+ +        +      
Sbjct: 355 YDGRIXEWSSSSXH----QDHSNLIVSLDNSKAQEYSSISWDDTL--------KVNGITK 402
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLLR-GAEVVSTINLRFPVTASAIAPDGSEAI 463
            + GSQPK  S        VL + D  ++L     +++ ++ L  P   SA++   +   
Sbjct: 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVA 460
Query: 464 IGSQDGK-LRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522
           +G ++G  ++V+ +  D      +    R   S I  SP  +  A+GDV  + +++D  S
Sbjct: 461 VGLEEGNTIQVFKL-SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVXGKILLYDLQS 519
Query: 523 REVKLKNMLYHTARINCLAWSP----------NNSMVATGSLDTCVIIYEIDKPASSRMT 572
           REVK     + T++IN ++W P             +VATGSLDT + IY + +P      
Sbjct: 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPXKIIKA 579
Query: 573 IKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 606
           +  AH  GV  L +    ++VSSG DAC++ W +
Sbjct: 580 LN-AHKDGVNNLLWETPSTLVSSGADACIKRWNV 612

>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic Crystal Form Length = 615

Iteration: 1
 Score =  243 bits (621), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 195/634 (30%), Positives = 310/634 (48%), Gaps = 58/634 (9%)
Query: 4   LAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSN-----PLQVSIYGEHAY 58
           L E     PST+R     +S  P +N+I Y  G+S  +  L +     P  V   G  + 
Sbjct: 6   LKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSS 65
Query: 59  PATVARFSP--NGEWIASADVSGTVRIWGAHNDHV-------LKKEFRVLSGRIDDLQWS 109
             T  +FSP    +++ S D SG V +WG   D         +K EF+VL+G I D+ W 
Sbjct: 66  VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 125
Query: 110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL 169
            +G R+   G+G+    V    WDSG ++GE  GHS+R+ +C  K SRP R  T G+D  
Sbjct: 126 FEGRRLCVVGEGRDNFGV-FISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 184
Query: 170 VNFYEGPPFKFKLSHRGH---SNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGE 225
           V FY+GPPFKF  S R H    +FV  V FSPD  +F I+V SD+K   +DGK+ + +  
Sbjct: 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY 244
Query: 226 LS-PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD 284
           +   ++  +G ++A+SW  D ++  T  AD + +VWD++     + K TL     G    
Sbjct: 245 IEDDQEPVQGGIFALSW-LDSQKFATVGADATIRVWDVTTSKCVQ-KWTLDKQQLGNQQV 302
Query: 285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344
            +V     N  ++ +SL GT++ +     E     +SGH K +TALTV   +P  ++S S
Sbjct: 303 GVVAT--GNGRIISLSLDGTLNFYELGHDEVLK-TISGHNKGITALTV---NP--LISGS 354
Query: 345 YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANS 404
           YDG I++W     +    Q   N  +    +  +E  +  +D+ +        +      
Sbjct: 355 YDGRIMEWSSSSMH----QDHSNLIVSLDNSKAQEYSSISWDDTL--------KVNGITK 402
Query: 405 IDIGSQPKDLSVALHYPELVLVSTDSGVVLLR-GAEVVSTINLRFPVTASAIAPDGSEAI 463
            + GSQPK  S        VL + D  ++L     +++ ++ L  P   SA++   +   
Sbjct: 403 HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSP--GSAVSLSQNYVA 460
Query: 464 IGSQDGK-LRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522
           +G ++G  ++V+ +  D      +    R   S I  SP  +  A+GDV  + +++D  S
Sbjct: 461 VGLEEGNTIQVFKL-SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQS 519
Query: 523 REVKLKNMLYHTARINCLAWSP----------NNSMVATGSLDTCVIIYEIDKPASSRMT 572
           REVK     + T++IN ++W P             +VATGSLDT + IY + +P      
Sbjct: 520 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA 579
Query: 573 IKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 606
           +  AH  GV  L +    ++VSSG DAC++ W +
Sbjct: 580 LN-AHKDGVNNLLWETPSTLVSSGADACIKRWNV 612

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  124 bits (312), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 142/551 (25%), Positives = 247/551 (44%), Gaps = 50/551 (9%)
Query: 65  FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124
           FSP+G+ IASA    TV++W  + +  L +     S  +  + +SPDG  I +  D K  
Sbjct: 24  FSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDK-- 79
Query: 125 SLVRAFMWD-SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS 183
                 +W+ +G  +    GHS  V   AF P     IA+  +D  V  +     +   +
Sbjct: 80  ---TVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQ-TIASASDDKTVKLWN-RNGQLLQT 134
Query: 184 HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWS 242
             GHS+ V  V FSPDG    S S DK   ++     ++ G+ L    GH  SV+ V++S
Sbjct: 135 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLW-----NRNGQLLQTLTGHSSSVWGVAFS 189
Query: 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG 302
           PDG+ + +AS DK+ K+W    + +G+L +TLT     G    + G  +  D   I S  
Sbjct: 190 PDGQTIASASDDKTVKLW----NRNGQLLQTLT-----GHSSSVRGVAFSPDGQTIASAS 240
Query: 303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL 362
              ++   N   +    L+GH  +V  +     D + I S+S D  +  W +       L
Sbjct: 241 DDKTVKLWNRNGQLLQTLTGHSSSVNGV-AFRPDGQTIASASDDKTVKLWNRNGQLLQTL 299
Query: 363 QRKENSQIKCFAAIEEEIVTSGFDN---KIWRVSLQGDQ--CGYANSI-DIGSQPKDLSV 416
               +S      + + + + S  D+   K+W  + Q  Q   G+++S+  +   P   ++
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTI 359
Query: 417 ALHYPELVLVSTDSGVVLL-RGAEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRVY 474
           A         S D  V L  R  +++ T+      V   A +PDG      S D  ++++
Sbjct: 360 A-------SASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW 412
Query: 475 SIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT 534
           +  G  L     L  H  +V  + +SPD    AS   ++   +W+R  +   L+ +  H+
Sbjct: 413 NRNGQLL---QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--LLQTLTGHS 467
Query: 535 ARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVV 593
           + +  +A+SP+   +A+ S D  V ++  +      +T    H   V G+AF+ D  ++ 
Sbjct: 468 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT---GHSSSVRGVAFSPDGQTIA 524
Query: 594 SSGEDACVRVW 604
           S+ +D  V++W
Sbjct: 525 SASDDKTVKLW 535

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 119/469 (25%), Positives = 214/469 (45%), Gaps = 81/469 (17%)
Query: 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL-SPEDGHKGSVYAVSWSPDG 245
           HS+ V  V FSPDG    S S DK   +++     + G+L     GH  SV+ V++SPDG
Sbjct: 15  HSSSVRGVAFSPDGQTIASASDDKTVKLWN-----RNGQLLQTLTGHSSSVWGVAFSPDG 69
Query: 246 KQVLTASADKSAKVWDISEDNHGKLKKTLT------------PSG---SGGVDDMLVGCL 290
           + + +AS DK+ K+W    + +G+L +TLT            P G   +   DD  V  L
Sbjct: 70  QTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV-KL 124
Query: 291 WQNDFLVIVSLGGTIS-------------IFSANDLEKSPL---------QLSGHMKNVT 328
           W  +  ++ +L G  S             I SA+D +   L          L+GH  +V 
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 184
Query: 329 ALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK---ENSQIKCFA-AIEEEIVTSG 384
            +   + D + I S+S D  +  W       G+L +     +S ++  A + + + + S 
Sbjct: 185 GV-AFSPDGQTIASASDDKTVKLW----NRNGQLLQTLTGHSSSVRGVAFSPDGQTIASA 239
Query: 385 FDN---KIWRVSLQGDQ--CGYANSID-IGSQPKDLSVALHYPELVLVSTDSGVVLL-RG 437
            D+   K+W  + Q  Q   G+++S++ +  +P   ++A         S D  V L  R 
Sbjct: 240 SDDKTVKLWNRNGQLLQTLTGHSSSVNGVAFRPDGQTIA-------SASDDKTVKLWNRN 292
Query: 438 AEVVSTIN-LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV 496
            +++ T+      V   A +PDG      S D  +++++  G  L     L  H  +V  
Sbjct: 293 GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHL---QTLTGHSSSVWG 349
Query: 497 IRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDT 556
           + +SPD    AS   ++   +W+R  +   L+ +  H++ +  +A+SP+   +A+ S D 
Sbjct: 350 VAFSPDGQTIASASDDKTVKLWNRNGQ--LLQTLTGHSSSVRGVAFSPDGQTIASASDDK 407
Query: 557 CVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604
            V ++  +      +T    H   V+G+AF+ D+ ++ S+ +D  V++W
Sbjct: 408 TVKLWNRNGQLLQTLT---GHSSSVWGVAFSPDDQTIASASDDKTVKLW 453

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 116/245 (47%), Gaps = 21/245 (8%)
Query: 36  GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE 95
           GR    +  +  L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K 
Sbjct: 6   GRGSEFVKPNYALKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KF 60
Query: 96  FRVLSGR---IDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLS 150
            + +SG    I D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFC 115
Query: 151 CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
           C F P     I +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D 
Sbjct: 116 CNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKL 270
              I+D  +   +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK 
Sbjct: 175 LCRIWDTASGQCLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKC 229
Query: 271 KKTLT 275
            KT T
Sbjct: 230 LKTYT 234

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 14  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 120 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 177
Query: 351 KW 352
            W
Sbjct: 178 IW 179

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 116/245 (47%), Gaps = 21/245 (8%)
Query: 36  GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE 95
           GR    +  +  L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K 
Sbjct: 6   GRGSEFVKPNYALKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KF 60
Query: 96  FRVLSGR---IDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLS 150
            + +SG    I D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFC 115
Query: 151 CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
           C F P     I +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D 
Sbjct: 116 CNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKL 270
              I+D  +   +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK 
Sbjct: 175 LCRIWDTASGQCLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKC 229
Query: 271 KKTLT 275
            KT T
Sbjct: 230 LKTYT 234

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 14  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 120 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 177
Query: 351 KW 352
            W
Sbjct: 178 IW 179

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 93.2 bits (230), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 21  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 75
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 129
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 190 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 237

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 72.4 bits (176), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 17  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 70
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 122
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 123 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 180
Query: 351 KW 352
            W
Sbjct: 181 IW 182

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 82
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 83  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 11  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 65
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 66  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 119
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 120 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 179
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 180 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 227

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/228 (31%), Positives = 106/228 (46%), Gaps = 26/228 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 7   PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 60
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 61  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 112
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 113 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 170
Query: 351 KWIQGIGYGGKLQRKENSQIKCFAAIE---EEIVTSGFDN--KIWRVS 393
            W    G   K    +++    F       + I+ +  DN  K+W  S
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 14  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 72
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 73  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 130

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 20  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 74
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 75  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 128
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 129 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 188
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 189 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 236

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 16  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 69
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 70  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 121
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 122 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 179
Query: 351 KW 352
            W
Sbjct: 180 IW 181

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 23  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 81
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 82  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 139

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 14  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 68
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 69  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 122
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 123 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 182
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 183 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 230

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 10  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 63
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 64  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 115
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 116 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 173
Query: 351 KWIQGIGYGGK-LQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVS 393
            W    G   K L   +N  +    F+   + I+ +  DN  K+W  S
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 17  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 75
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 76  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 133

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 32  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 86
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 87  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 140
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 141 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 200
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 201 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 248

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 28  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 81
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 82  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 133
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 134 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 191
Query: 351 KW 352
            W
Sbjct: 192 IW 193

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 35  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 93
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 94  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 151

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 93.2 bits (230), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 15  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 69
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 123
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 184 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 231

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 21/187 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 11  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 64
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 65  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 116
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 117 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 174
Query: 351 KWIQGIG 357
            W    G
Sbjct: 175 IWDTASG 181

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 76
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 15  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 69
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 70  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 123
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 124 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 183
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 184 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 231

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 11  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 64
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 65  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 116
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 117 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 174
Query: 351 KW 352
            W
Sbjct: 175 IW 176

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 18  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 76
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 77  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 134

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 37  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 91
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 92  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 145
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 146 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 205
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 206 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 253

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 21/187 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 33  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 86
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 87  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 138
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 139 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 196
Query: 351 KWIQGIG 357
            W    G
Sbjct: 197 IWDTASG 203

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 40  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 98
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++        T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 99  SNLLVSASDDKTLKIWDVSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 156

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 92.8 bits (229), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 16  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 70
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 71  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 124
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 125 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 184
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 185 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 232

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 62/182 (34%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 12  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 65
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 66  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 117
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 118 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 175
Query: 351 KW 352
            W
Sbjct: 176 IW 177

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 19  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 77
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 78  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 135

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 21  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 75
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 129
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 190 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 237

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 17  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 70
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 122
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 123 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 180
Query: 351 KWIQGIGYGGK-LQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVS 393
            W    G   K L   +N  +    F+   + I+ +  DN  K+W  S
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 82
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++        T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 83  SNLLVSASDDKTLKIWDVSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 39  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 93
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 94  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 147
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 148 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 207
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 208 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 255

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 63/187 (33%), Positives = 91/187 (48%), Gaps = 21/187 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 35  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 88
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 89  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 140
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 141 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 198
Query: 351 KWIQGIG 357
            W    G
Sbjct: 199 IWDTASG 205

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 42  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 100
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++        T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 101 SNLLVSASDDKTLKIWDVSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 158

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 21/233 (9%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---ID 104
           L+ ++ G H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I 
Sbjct: 21  LKFTLAG-HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGIS 75
Query: 105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIA 162
           D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  C F P     I 
Sbjct: 76  DVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IV 129
Query: 163 TCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
           +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D    I+D  +   
Sbjct: 130 SGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQC 189
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 190 LKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 237

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 73/228 (32%), Positives = 108/228 (47%), Gaps = 26/228 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 17  PNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 70
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 71  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 122
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 123 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 180
Query: 351 KWIQGIGYGGK-LQRKENSQIKC--FAAIEEEIVTSGFDN--KIWRVS 393
            W    G   K L   +N  +    F+   + I+ +  DN  K+W  S
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 24  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 82
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++        T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 83  SNLLVSASDDKTLKIWDVSS-GKCLKTLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 140

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 76/245 (31%), Positives = 116/245 (47%), Gaps = 21/245 (8%)
Query: 36  GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE 95
           GR    +  +  L+ ++ G H    +  +FSPNGEW+A++     ++IWGA++     K 
Sbjct: 6   GRGSEFVKPNYALKFTLAG-HTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDG----KF 60
Query: 96  FRVLSGR---IDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLS 150
            + +SG    I D+ WS D   +V+  D K   +     WD  SG  +    GHS  V  
Sbjct: 61  EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFC 115
Query: 151 CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
           C F P     I +   D  V  ++    K   +   HS+ V+ V F+ DGS  +S S D 
Sbjct: 116 CNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKL 270
              I+D  +   +  L  +D     V  V +SP+GK +L A+ D + K+WD S+   GK 
Sbjct: 175 LCRIWDTASGQCLKTLIDDDN--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKC 229
Query: 271 KKTLT 275
            KT T
Sbjct: 230 LKTYT 234

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 61/182 (33%), Positives = 90/182 (49%), Gaps = 21/182 (11%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +  K +  GH+  V+ V+FSP+G    + S+DK   I   YDGK    I       GH
Sbjct: 14  PNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            Q++ +V  S   ++ I+      K    L  H   V+A+   N D  +I+SSSYDGL  
Sbjct: 120 PQSNLIVSGSFDESVRIWDVK-TGKCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGLCR 177
Query: 351 KW 352
            W
Sbjct: 178 IW 179

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 30/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    A+   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 90.9 bits (224), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 106/225 (47%), Gaps = 20/225 (8%)
Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---IDDLQWSPDG 112
           H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I D+ WS D 
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 80
Query: 113 LRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170
             +V+  D K   +     WD  SG  +    GHS  V  C F P     I +   D  V
Sbjct: 81  NLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 134
Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
             ++        +   HS+ V+ V F+ DGS  +S S D    I+D  +   +  L  +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
                V  V +SP+GK +L A+ D + K+WD S+   GK  KT T
Sbjct: 195 N--PPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYT 234

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +    +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 14  PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
            Q++ +V  S   ++ I+   D++       L  H   V+A+   N D  +I+SSSYDGL
Sbjct: 120 PQSNLIVSGSFDESVRIW---DVKTGMCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGL 175
Query: 349 IVKWIQGIGYGGKLQRKENSQIKCFAAIE---EEIVTSGFDN--KIWRVS 393
              W    G   K    +++    F       + I+ +  DN  K+W  S
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 90.1 bits (222), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 72/225 (32%), Positives = 105/225 (46%), Gaps = 20/225 (8%)
Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---IDDLQWSPDG 112
           H    +  +FSPNGEW+AS+     ++IWGA++     K  + +SG    I D+ WS D 
Sbjct: 25  HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDG----KFEKTISGHKLGISDVAWSSDS 80
Query: 113 LRIVACGDGKGKSLVRAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170
             +V+  D K   +     WD  SG  +    GHS  V  C F P     I +   D  V
Sbjct: 81  NLLVSASDDKTLKI-----WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESV 134
Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
             ++        +   HS+ V+ V F+ DGS  +S S D    I+D  +   +  L  +D
Sbjct: 135 RIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD 194
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
                V  V +SP+GK +L A+ D   K+WD S+   GK  KT T
Sbjct: 195 N--PPVSFVKFSPNGKYILAATLDNDLKLWDYSK---GKCLKTYT 234

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/230 (30%), Positives = 107/230 (46%), Gaps = 30/230 (13%)
Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII---YDGKTADKIGELSPEDGH 232
           P +    +  GH+  V+ V+FSP+G    S S+DK   I   YDGK    I       GH
Sbjct: 14  PNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS------GH 67
Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW- 291
           K  +  V+WS D   +++AS DK+ K+WD+S    GK  KTL      G  + +  C + 
Sbjct: 68  KLGISDVAWSSDSNLLVSASDDKTLKIWDVSS---GKCLKTLK-----GHSNYVFCCNFN 119
Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
            Q++ +V  S   ++ I+   D++       L  H   V+A+   N D  +I+SSSYDGL
Sbjct: 120 PQSNLIVSGSFDESVRIW---DVKTGMCLKTLPAHSDPVSAVH-FNRDGSLIVSSSYDGL 175
Query: 349 IVKWIQGIGYGGKLQRKENSQIKCFAAIE---EEIVTSGFDN--KIWRVS 393
              W    G   K    +++    F       + I+ +  DN  K+W  S
Sbjct: 176 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYS 225

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 61/120 (50%), Gaps = 4/120 (3%)
Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN 545
            L  H  AVS +++SP+    AS   ++   +W     + + K +  H   I+ +AWS +
Sbjct: 21  TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFE-KTISGHKLGISDVAWSSD 79
Query: 546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGE-DACVRVW 604
           ++++ + S D  + I+++      + T+KG H   V+   F  + +++ SG  D  VR+W
Sbjct: 80  SNLLVSASDDKTLKIWDVSSGKCLK-TLKG-HSNYVFCCNFNPQSNLIVSGSFDESVRIW 137

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 170/443 (38%), Gaps = 65/443 (14%)
Query: 108  WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED 167
            +S DG RI +CG  K    ++ F  ++G  + +   H   VL CAF     + IATC  D
Sbjct: 623  FSQDGQRIASCGADKT---LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY-IATCSAD 678
Query: 168  FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS 227
              V  ++    K   ++  HS  VNC  F+   +  +  +      +       K+ +L+
Sbjct: 679  KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL-------KLWDLN 731
Query: 228  PED------GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK---LKKTLTPSG 278
             ++      GH  SV    +SPD + + + SAD + ++WD+   N  K   +K+    S 
Sbjct: 732  QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 791
Query: 279  S--GGVDDMLVGCLWQND-FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI 335
                 V+ ++  C W  D   +IV+    + +F   D+  S L    H  + + +   + 
Sbjct: 792  DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF---DIHTSGLLAEIHTGHHSTIQYCDF 848
Query: 336  DP----KVILSSSY-------DGLI--------VKWIQGIGYGGKLQRKENSQIKCFAAI 376
             P     VI  S Y       D  +        + W+ G+                F+  
Sbjct: 849  SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM---------------FSPD 893
Query: 377  EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR 436
                +T+  D  I RV      C   NS  +  Q  D+    +   ++ V    G+ L+ 
Sbjct: 894  GSSFLTASDDQTI-RVWETKKVC--KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 950
Query: 437  GAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV 496
            G            V+   ++P       G +DG +++  +  + +    V   H+ AV  
Sbjct: 951  GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAVRH 1008
Query: 497  IRYSPDVSMFASGDVNREAIVWD 519
            I+++ D     S   +    VW+
Sbjct: 1009 IQFTADGKTLISSSEDSVIQVWN 1031

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 186/458 (40%), Gaps = 69/458 (15%)
Query: 160  RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT 219
            RIA+CG D  +  ++    +  L  + H + V C  FS D S   + S+DKK  I+D  T
Sbjct: 629  RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 688
Query: 220  ADKIGELSPEDGHKGSVYAVSWSPDGKQVL--TASADKSAKVWDISEDNHGKLKKTLTPS 277
               +      D H   V    ++     +L  T S D   K+WD+   N  + + T+   
Sbjct: 689  GKLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL---NQKECRNTMF-- 740
Query: 278  GSGGVDDMLVGCLWQND--FLVIVSLGGTISIF---SANDLEKSPLQLSGHMKNVTALTV 332
               G  + +  C +  D   L   S  GT+ ++   SAN  E+  +       NV    +
Sbjct: 741  ---GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN--ERKSI-------NVKRFFL 788
Query: 333  LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRV 392
             + DP   +      +IVK       G K+     +++  F     +I TSG   +I   
Sbjct: 789  SSEDPPEDVE-----VIVKCCSWSADGDKIIVAAKNKVLLF-----DIHTSGLLAEI--- 835
Query: 393  SLQGDQCGYANSIDIGS-QPKD----LSVALHYPELVLVSTDSGVVLLRGAEVVSTINLR 447
                   G+ ++I      P D    ++++ +  EL  + +   V   RG       +L 
Sbjct: 836  -----HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-------HLS 883
Query: 448  FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFA 507
            + V     +PDGS  +  S D  +RV+  +        VL++    + V+    +  + A
Sbjct: 884  W-VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE---IDVVFQENETMVLA 939
Query: 508  SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
              ++    ++  +  +   L       A+++C   SP+   VA G  D  + I E+  P 
Sbjct: 940  VDNIRGLQLIAGKTGQIDYLPE-----AQVSCCCLSPHLEYVAFGDEDGAIKIIEL--PN 992
Query: 568  SSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604
            +   +    H   V  + FT D  +++SS ED+ ++VW
Sbjct: 993  NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1030

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 95/443 (21%), Positives = 170/443 (38%), Gaps = 65/443 (14%)
Query: 108  WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED 167
            +S DG RI +CG  K    ++ F  ++G  + +   H   VL CAF     + IATC  D
Sbjct: 630  FSQDGQRIASCGADKT---LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSY-IATCSAD 685
Query: 168  FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS 227
              V  ++    K   ++  HS  VNC  F+   +  +  +      +       K+ +L+
Sbjct: 686  KKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFL-------KLWDLN 738
Query: 228  PED------GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK---LKKTLTPSG 278
             ++      GH  SV    +SPD + + + SAD + ++WD+   N  K   +K+    S 
Sbjct: 739  QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSE 798
Query: 279  S--GGVDDMLVGCLWQND-FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI 335
                 V+ ++  C W  D   +IV+    + +F   D+  S L    H  + + +   + 
Sbjct: 799  DPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLF---DIHTSGLLAEIHTGHHSTIQYCDF 855
Query: 336  DP----KVILSSSY-------DGLI--------VKWIQGIGYGGKLQRKENSQIKCFAAI 376
             P     VI  S Y       D  +        + W+ G+                F+  
Sbjct: 856  SPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGV---------------MFSPD 900
Query: 377  EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR 436
                +T+  D  I RV      C   NS  +  Q  D+    +   ++ V    G+ L+ 
Sbjct: 901  GSSFLTASDDQTI-RVWETKKVC--KNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIA 957
Query: 437  GAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV 496
            G            V+   ++P       G +DG +++  +  + +    V   H+ AV  
Sbjct: 958  GKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGV--GHKKAVRH 1015
Query: 497  IRYSPDVSMFASGDVNREAIVWD 519
            I+++ D     S   +    VW+
Sbjct: 1016 IQFTADGKTLISSSEDSVIQVWN 1038

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 186/458 (40%), Gaps = 69/458 (15%)
Query: 160  RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT 219
            RIA+CG D  +  ++    +  L  + H + V C  FS D S   + S+DKK  I+D  T
Sbjct: 636  RIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT 695
Query: 220  ADKIGELSPEDGHKGSVYAVSWSPDGKQVL--TASADKSAKVWDISEDNHGKLKKTLTPS 277
               +      D H   V    ++     +L  T S D   K+WD+   N  + + T+   
Sbjct: 696  GKLV---HTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL---NQKECRNTMF-- 747
Query: 278  GSGGVDDMLVGCLWQND--FLVIVSLGGTISIF---SANDLEKSPLQLSGHMKNVTALTV 332
               G  + +  C +  D   L   S  GT+ ++   SAN  E+  +       NV    +
Sbjct: 748  ---GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSAN--ERKSI-------NVKRFFL 795
Query: 333  LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRV 392
             + DP   +      +IVK       G K+     +++  F     +I TSG   +I   
Sbjct: 796  SSEDPPEDVE-----VIVKCCSWSADGDKIIVAAKNKVLLF-----DIHTSGLLAEI--- 842
Query: 393  SLQGDQCGYANSIDIGS-QPKD----LSVALHYPELVLVSTDSGVVLLRGAEVVSTINLR 447
                   G+ ++I      P D    ++++ +  EL  + +   V   RG       +L 
Sbjct: 843  -----HTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG-------HLS 890
Query: 448  FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFA 507
            + V     +PDGS  +  S D  +RV+  +        VL++    + V+    +  + A
Sbjct: 891  W-VHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQE---IDVVFQENETMVLA 946
Query: 508  SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
              ++    ++  +  +   L       A+++C   SP+   VA G  D  + I E+  P 
Sbjct: 947  VDNIRGLQLIAGKTGQIDYLPE-----AQVSCCCLSPHLEYVAFGDEDGAIKIIEL--PN 999
Query: 568  SSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604
            +   +    H   V  + FT D  +++SS ED+ ++VW
Sbjct: 1000 NRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVW 1037

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 66.2 bits (160), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 21/272 (7%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH----VLKKEFRVLSGRI 103
           L+ ++ G + +   +A      + I SA    T+ +W    D     + ++  R  S  +
Sbjct: 30  LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 89
Query: 104 DDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163
            D+  S DG   ++   G     +R +   +GT    F GH++ VLS AF  S   +I +
Sbjct: 90  SDVVISSDGQFALS---GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVS 145
Query: 164 CGEDFLVNFYEGPPF-KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
              D  +  +      K+ +    HS +V+CVRFSP+ S  I VS     ++     A+ 
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN- 204
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282
               +   GH G +  V+ SPDG    +   D  A +WD++E  H      L     G +
Sbjct: 205 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH------LYTLDGGDI 258
Query: 283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLE 314
            + L  C   N + +  + G +I I+   DLE
Sbjct: 259 INAL--CFSPNRYWLCAATGPSIKIW---DLE 285

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 70/272 (25%), Positives = 117/272 (43%), Gaps = 21/272 (7%)
Query: 48  LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH----VLKKEFRVLSGRI 103
           L+ ++ G + +   +A      + I SA    T+ +W    D     + ++  R  S  +
Sbjct: 7   LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 104 DDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163
            D+  S DG   ++   G     +R +   +GT    F GH++ VLS AF  S   +I +
Sbjct: 67  SDVVISSDGQFALS---GSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFS-SDNRQIVS 122
Query: 164 CGEDFLVNFYEGPPF-KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK 222
              D  +  +      K+ +    HS +V+CVRFSP+ S  I VS     ++     A+ 
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN- 181
Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282
               +   GH G +  V+ SPDG    +   D  A +WD++E  H      L     G +
Sbjct: 182 CKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKH------LYTLDGGDI 235
Query: 283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLE 314
            + L  C   N + +  + G +I I+   DLE
Sbjct: 236 INAL--CFSPNRYWLCAATGPSIKIW---DLE 262

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 126/315 (40%), Gaps = 70/315 (22%)
Query: 2   PQLAETYTCVPSTERGRGILISG-HPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPA 60
           PQ  ET T V ST R + +L  G +P  +S   + G     L+          G  A+ +
Sbjct: 22  PQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLE----------GHSAFVS 71
Query: 61  TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD 120
            VA  S NG +  SA    ++R+W   N     K F   +  +  + +SPD  +IV+   
Sbjct: 72  DVA-LSNNGNFAVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDNRQIVS--G 127
Query: 121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS--RPFRIATCGEDFLVNFYEGPPF 178
           G+  +L    +     +      H+  V    F PS   P  I + G D LV  ++    
Sbjct: 128 GRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPV-IVSGGWDNLVKVWDLATG 186
Query: 179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI------------------------- 213
           +     +GH+N+V  V  SPDGS  +  SSDK G+                         
Sbjct: 187 RLVTDLKGHTNYVTSVTVSPDGS--LCASSDKDGVARLWDLTKGEALSEMAAGAPINQIC 244
Query: 214 -----------------IYDGKTADKIGELSPEDGHKGS------VYAVSWSPDGKQVLT 250
                            I+D +  D I EL+PE  H+GS        +++WS DG  + +
Sbjct: 245 FSPNRYWMCAATEKGIRIFDLENKDIIVELAPE--HQGSKKIVPECVSIAWSADGSTLYS 302
Query: 251 ASADKSAKVWDISED 265
              D   +VW +SE+
Sbjct: 303 GYTDNVIRVWGVSEN 317

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/230 (27%), Positives = 103/230 (44%), Gaps = 29/230 (12%)
Query: 139 GEFDGHSRRV--LSCAFKPSRPFRIATCGED-FLVNFYEGP-----PFKFKLSHR---GH 187
           G+  GH   V  L+C   P    ++ +   D  L+++   P        + L  R   GH
Sbjct: 7   GQLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGH 66
Query: 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ 247
           S FV+ V  S +G+  +S S D    +++ +      +     GH   V +V++SPD +Q
Sbjct: 67  SAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFL---GHTKDVLSVAFSPDNRQ 123
Query: 248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN---DFLVIVSLGGT 304
           +++   D + +VW++     G+   TL    S G     V C+  +   D  VIVS GG 
Sbjct: 124 IVSGGRDNALRVWNVK----GECMHTL----SRGAHTDWVSCVRFSPSLDAPVIVS-GGW 174
Query: 305 ISIFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
            ++    DL    L   L GH   VT++TV + D  +  SS  DG+   W
Sbjct: 175 DNLVKVWDLATGRLVTDLKGHTNYVTSVTV-SPDGSLCASSDKDGVARLW 223

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 10/121 (8%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGD---TLTEEAVLEKHRGAVSVIRYSP--DVS 504
           V + A +PD  + + G +D  LRV++++G+   TL+  A    H   VS +R+SP  D  
Sbjct: 112 VLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGA----HTDWVSCVRFSPSLDAP 167
Query: 505 MFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564
           +  SG  +    VWD  +  + + ++  HT  +  +  SP+ S+ A+   D    ++++ 
Sbjct: 168 VIVSGGWDNLVKVWDLATGRL-VTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLT 226
Query: 565 K 565
           K
Sbjct: 227 K 227

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 94/225 (41%), Gaps = 35/225 (15%)
Query: 68  NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL- 126
           N E + +  +   V++W   ++ +             DLQWS +G ++         +L 
Sbjct: 47  NSETVVTGSLDDLVKVWKWRDERL-------------DLQWSLEGHQLGVVSVDISHTLP 93
Query: 127 ----------VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--E 174
                     +R +  ++G  +   D       + AF P   + +AT      VN +  E
Sbjct: 94  IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQY-LATGTHVGKVNIFGVE 152
Query: 175 GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKG 234
               ++ L  RG   F+  + +SPDG    S + D    I+D  T   +  L   +GH  
Sbjct: 153 SGKKEYSLDTRG--KFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTL---EGHAM 207
Query: 235 SVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS 279
            + ++++SPD + ++TAS D   K++D+    H  L  TL+   S
Sbjct: 208 PIRSLTFSPDSQLLVTASDDGYIKIYDV---QHANLAGTLSGHAS 249

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 107/234 (45%), Gaps = 32/234 (13%)
Query: 364 RKENSQIKCFAAIEEEIVTSGFDN--KIW-----RVSLQGDQCGYANSIDIGSQPKDLSV 416
           +KENS         E +VT   D+  K+W     R+ LQ    G+     +G    D+S 
Sbjct: 44  KKENS---------ETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQ----LGVVSVDISH 90
Query: 417 ALHYPELVLVSTDSGVVL--LRGAEVVSTINLRFPVTASAIA--PDGSEAIIGSQDGKLR 472
            L  P     S D+ + L  L   + + +I+   PV A  +A  PD      G+  GK+ 
Sbjct: 91  TL--PIAASSSLDAHIRLWDLENGKQIKSIDAG-PVDAWTLAFSPDSQYLATGTHVGKVN 147
Query: 473 VYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY 532
           ++ +  ++  +E  L+     +  I YSPD    ASG ++    ++D  + ++ L  +  
Sbjct: 148 IFGV--ESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKL-LHTLEG 204
Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAF 586
           H   I  L +SP++ ++ T S D  + IY++ + A+   T+ G H   V  +AF
Sbjct: 205 HAMPIRSLTFSPDSQLLVTASDDGYIKIYDV-QHANLAGTLSG-HASWVLNVAF 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 63/275 (22%), Positives = 108/275 (39%), Gaps = 35/275 (12%)
Query: 14  TERGRGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
           ++R +GI    HP    +L T  +GR V I +    ++V        P    +F     W
Sbjct: 13  SDRVKGI--DFHPTEPWVLTTLYSGR-VEIWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 72  IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL----- 126
           I        +R++  +              ++ D +  PD +R +A    K   L     
Sbjct: 70  IIVGSDDFRIRVFNYNTGE-----------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 127 --VRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE----GPPFK 179
             V+ + W++   + + F+GH   V+  AF P  P   A+   D  V  +      P F 
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239
                    N+V+     PD    I+ S D    I+D +T   +  L   +GH  +V   
Sbjct: 179 LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFA 234
Query: 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
            + P    +++ S D + K+W+ S     K++KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSST---YKVEKTL 266

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 115/284 (40%), Gaps = 66/284 (23%)
Query: 65  FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD---LQWSPDGLRIVACGDG 121
           FSP+G+++A+      +RIW   N    +K   +L G   D   L + P G ++V+   G
Sbjct: 131 FSPDGKFLATGAEDRLIRIWDIEN----RKIVMILQGHEQDIYSLDYFPSGDKLVS---G 183
Query: 122 KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK 181
            G   VR  +WD                          R   C     ++  +G      
Sbjct: 184 SGDRTVR--IWD-------------------------LRTGQCS--LTLSIEDG------ 208
Query: 182 LSHRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKTADKIGELSPED----GHKGSV 236
                    V  V  SP   K+I+  S D+   ++D +T   +  L  E+    GHK SV
Sbjct: 209 ---------VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSV 259
Query: 237 YAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS------GGVDDMLVGCL 290
           Y+V ++ DG+ V++ S D+S K+W++   N+    KT   SG+      G  D +L    
Sbjct: 260 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN-SGTCEVTYIGHKDFVLSVAT 318
Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN 334
            QND  ++        +F         L L GH  +V ++ V N
Sbjct: 319 TQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 362

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 13/165 (7%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
           + +   +PDG     G++D  +R++ I    +    +L+ H   +  + Y P      SG
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIV--MILQGHEQDIYSLDYFPSGDKLVSG 183
Query: 510 DVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYE------ 562
             +R   +WD  + +  L   L     +  +A SP +   +A GSLD  V +++      
Sbjct: 184 SGDRTVRIWDLRTGQCSL--TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFL 241
Query: 563 IDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606
           +++  S   +  G H   VY + FT D  SVVS   D  V++W L
Sbjct: 242 VERLDSENESGTG-HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 35/275 (12%)
Query: 14  TERGRGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
           ++R +GI    HP    +L T  +GR V + +    ++V        P    +F     W
Sbjct: 13  SDRVKGI--DFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 72  IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL----- 126
           I        +R++  +              ++ D +  PD +R +A    K   L     
Sbjct: 70  IIVGSDDFRIRVFNYNTGE-----------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 127 --VRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE----GPPFK 179
             V+ + W++   + + F+GH   V+  AF P  P   A+   D  V  +      P F 
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239
                    N+V+     PD    I+ S D    I+D +T   +  L   +GH  +V   
Sbjct: 179 LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFA 234
Query: 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
            + P    +++ S D + K+W+ S     K++KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSST---YKVEKTL 266

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 35/275 (12%)
Query: 14  TERGRGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
           ++R +GI    HP    +L T  +GR V + +    ++V        P    +F     W
Sbjct: 13  SDRVKGI--DFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 72  IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL----- 126
           I        +R++  +              ++ D +  PD +R +A    K   L     
Sbjct: 70  IIVGSDDFRIRVFNYNTGE-----------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 127 --VRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE----GPPFK 179
             V+ + W++   + + F+GH   V+  AF P  P   A+   D  V  +      P F 
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239
                    N+V+     PD    I+ S D    I+D +T   +  L   +GH  +V   
Sbjct: 179 LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFA 234
Query: 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
            + P    +++ S D + K+W+ S     K++KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSST---YKVEKTL 266

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93  KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
           ++  R    +I  + W  D  L + A  DGK        +WDS T   V      S  V+
Sbjct: 59  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 112
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
           +CA+ PS  + +A  G D + + Y     EG   +      GH+ +++C RF  D ++ +
Sbjct: 113 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 169
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
           + S D    ++D    +   + +   GH G V ++S +PD +  ++ + D SAK+WD+ E
Sbjct: 170 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226
Query: 265 DNHGKLKKTLT 275
              G  ++T T
Sbjct: 227 ---GMCRQTFT 234

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 62/275 (22%), Positives = 108/275 (39%), Gaps = 35/275 (12%)
Query: 14  TERGRGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
           ++R +GI    HP    +L T  +GR V + +    ++V        P    +F     W
Sbjct: 13  SDRVKGI--DFHPTEPWVLTTLYSGR-VELWNYETQVEVRSIQVTETPVRAGKFIARKNW 69
Query: 72  IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL----- 126
           I        +R++  +              ++ D +  PD +R +A    K   L     
Sbjct: 70  IIVGSDDFRIRVFNYNTGE-----------KVVDFEAHPDYIRSIAVHPTKPYVLSGSDD 118
Query: 127 --VRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE----GPPFK 179
             V+ + W++   + + F+GH   V+  AF P  P   A+   D  V  +      P F 
Sbjct: 119 LTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT 178
Query: 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV 239
                    N+V+     PD    I+ S D    I+D +T   +  L   +GH  +V   
Sbjct: 179 LTTGQERGVNYVDYYPL-PDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFA 234
Query: 240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
            + P    +++ S D + K+W+ S     K++KTL
Sbjct: 235 VFHPTLPIIISGSEDGTLKIWNSST---YKVEKTL 266

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93  KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
           ++  R    +I  + W  D  L + A  DGK        +WDS T   V      S  V+
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 101
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
           +CA+ PS  + +A  G D + + Y     EG   +      GH+ +++C RF  D ++ +
Sbjct: 102 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 158
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
           + S D    ++D    +   + +   GH G V ++S +PD +  ++ + D SAK+WD+ E
Sbjct: 159 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 265 DNHGKLKKTLT 275
              G  ++T T
Sbjct: 216 ---GMCRQTFT 223

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93  KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
           ++  R    +I  + W  D  L + A  DGK        +WDS T   V      S  V+
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLVSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 101
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
           +CA+ PS  + +A  G D + + Y     EG   +      GH+ +++C RF  D ++ +
Sbjct: 102 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 158
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
           + S D    ++D    +   + +   GH G V ++S +PD +  ++ + D SAK+WD+ E
Sbjct: 159 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 265 DNHGKLKKTLT 275
              G  ++T T
Sbjct: 216 ---GMCRQTFT 223

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93  KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
           ++  R    +I  + W  D  L + A  DGK        +WDS T   V      S  V+
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLLSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 101
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
           +CA+ PS  + +A  G D + + Y     EG   +      GH+ +++C RF  D ++ +
Sbjct: 102 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 158
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
           + S D    ++D    +   + +   GH G V ++S +PD +  ++ + D SAK+WD+ E
Sbjct: 159 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 265 DNHGKLKKTLT 275
              G  ++T T
Sbjct: 216 ---GMCRQTFT 223

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/191 (27%), Positives = 90/191 (47%), Gaps = 23/191 (12%)
Query: 93  KKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVL 149
           ++  R    +I  + W  D  L + A  DGK        +WDS T   V      S  V+
Sbjct: 48  RRTLRGHLAKIYAMHWGTDSRLLLSASQDGK------LIIWDSYTTNKVHAIPLRSSWVM 101
Query: 150 SCAFKPSRPFRIATCGEDFLVNFY-----EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI 204
           +CA+ PS  + +A  G D + + Y     EG   +      GH+ +++C RF  D ++ +
Sbjct: 102 TCAYAPSGNY-VACGGLDNICSIYNLKTREGN-VRVSRELAGHTGYLSCCRF-LDDNQIV 158
Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
           + S D    ++D    +   + +   GH G V ++S +PD +  ++ + D SAK+WD+ E
Sbjct: 159 TSSGDTTCALWD---IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215
Query: 265 DNHGKLKKTLT 275
              G  ++T T
Sbjct: 216 ---GMCRQTFT 223

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 56.2 bits (134), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 99/233 (42%), Gaps = 19/233 (8%)
Query: 131 MWDSGTNVGEFDGH-SRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFK-LSHRG 186
           M DS   +G    H   R    A+ P+    +A+CG D  +  +  EG  +  K +   G
Sbjct: 1   MKDSLVLLGRVPAHPDSRCWFLAWNPAGTL-LASCGGDRRIRIWGTEGDSWICKSVLSEG 59
Query: 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK 246
           H   V  V +SP G+   S S D    I+  K  D    ++  +GH+  V +V+W+P G 
Sbjct: 60  HQRTVRKVAWSPCGNYLASASFDATTCIWK-KNQDDFECVTTLEGHENEVKSVAWAPSGN 118
Query: 247 QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVSLGGT 304
            + T S DKS  VW++ E++  +    L  S +  V  +    +W    + L   S   T
Sbjct: 119 LLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHV----VWHPSQELLASASYDDT 173
Query: 305 ISIF-SANDLEKSPLQLSGHMKNVTALTVLNIDP--KVILSSSYDGLIVKWIQ 354
           + ++    D       L GH   V +L     DP  + + S S D  +  W Q
Sbjct: 174 VKLYREEEDDWVCCATLEGHESTVWSLA---FDPSGQRLASCSDDRTVRIWRQ 223

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/114 (25%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL-EKHRGAVSVIRYSPDVSMFASGDVN 512
           A  P G+       D ++R++   GD+   ++VL E H+  V  + +SP  +  AS   +
Sbjct: 23  AWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFD 82
Query: 513 REAIVWDRVSREVKLKNMLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDK 565
               +W +   + +    L  H   +  +AW+P+ +++AT S D  V ++E+D+
Sbjct: 83  ATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 71/311 (22%), Positives = 133/311 (42%), Gaps = 57/311 (18%)
Query: 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSV 236
           PF    S    +N V C+ +S DG+  ++   + +  +++ KT   +  L   + H+  +
Sbjct: 97  PFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL---NFHRAPI 152
Query: 237 YAVSWSPDGKQVLTASADKSAKVWDI---SEDNHGKLKKT----LTPSGSGGVDDMLVGC 289
            +V W+ DG  +++   +    +W++   +   H +LK+T    +      G   + V  
Sbjct: 153 VSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDV 212
Query: 290 LWQNDFLVIVSLGGTISIFSANDLEKSPL-QLSGHMKNVTALTVLNIDPKVILSSSYDGL 348
            W +D   ++  G   +IF     EK+P  +L GH   ++ L   N   K++LS+S DG 
Sbjct: 213 EWVDDDKFVIP-GPKGAIFVYQITEKTPTGKLIGHHGPISVLE-FNDTNKLLLSASDDGT 270
Query: 349 IVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGF--DNKIWRVSLQGDQCGYANSID 406
           +  W  G G         NSQ  CF    + IV++ +  D+K+   S+ G       S+ 
Sbjct: 271 LRIWHGGNG---------NSQ-NCFYGHSQSIVSASWVGDDKVISCSMDG-------SVR 313
Query: 407 IGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGS 466
           + S  ++  +AL   + V                        P+ A  I+ DG +  +  
Sbjct: 314 LWSLKQNTLLALSIVDGV------------------------PIFAGRISQDGQKYAVAF 349
Query: 467 QDGKLRVYSIR 477
            DG++ VY ++
Sbjct: 350 MDGQVNVYDLK 360

>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2 Length = 425

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/171 (24%), Positives = 77/171 (45%), Gaps = 21/171 (12%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASG 509
           VT  A + DG+  + G ++G+LR+++  G  L    VL  HR  +  ++++ D +   S 
Sbjct: 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGALLN---VLNFHRAPIVSVKWNKDGTHIISM 167
Query: 510 DVNREAIVWDRVSREVKLKNMLYHT--ARINC------------LAWSPNNSMVATGSLD 555
           DV    I+W+ +S  V     L  T  + IN             + W  ++  V  G   
Sbjct: 168 DVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGP-K 226
Query: 556 TCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHS-VVSSGEDACVRVWR 605
             + +Y+I +   +   I   H G +  L F D +  ++S+ +D  +R+W 
Sbjct: 227 GAIFVYQITEKTPTGKLI--GHHGPISVLEFNDTNKLLLSASDDGTLRIWH 275

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 73/331 (22%), Positives = 131/331 (39%), Gaps = 47/331 (14%)
Query: 47  PLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRID-- 104
           P + ++ G H  P T   F P    + SA    T+++W    D+      R L G  D  
Sbjct: 99  PEKYALSG-HRSPVTRVIFHPVFSVMVSASEDATIKVW----DYETGDFERTLKGHTDSV 153
Query: 105 -DLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163
            D+ +   G  + +C        ++ + +     +    GH   V S +  P+    I +
Sbjct: 154 QDISFDHSGKLLASCS---ADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGD-HIVS 209
Query: 164 CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI 223
              D  +  +E        +  GH  +V  VR + DG+   S S+D+   ++   T +  
Sbjct: 210 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 269
Query: 224 GELSPEDGHKGSVYAVSWSPD--------------------GKQVLTASADKSAKVWDIS 263
            EL     H+  V  +SW+P+                    G  +L+ S DK+ K+WD+S
Sbjct: 270 AELRE---HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Query: 264 EDNHGKLKKTLTPSGSGGVDDMLVGCLWQN--DFLVIVSLGGTISIFSANDLEKSPLQLS 321
               G    TL      G D+ + G L+ +   F++  +   T+ ++   + ++    L+
Sbjct: 327 T---GMCLMTLV-----GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKN-KRCMKTLN 377
Query: 322 GHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
            H   VT+L      P V+ + S D  +  W
Sbjct: 378 AHEHFVTSLDFHKTAPYVV-TGSVDQTVKVW 407

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 93/209 (44%), Gaps = 35/209 (16%)
Query: 423 LVLVSTDSGVVL--LRGAEVVSTINLR-FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD 479
           L   S D  + L   +G E + T++     V++ +I P+G   +  S+D  ++++ ++  
Sbjct: 165 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG 224
Query: 480 TLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC 539
              +      HR  V ++R + D ++ AS   ++   VW   ++E K + +  H   + C
Sbjct: 225 YCVK--TFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAE-LREHRHVVEC 281
Query: 540 LAWSPNNS--------------------MVATGSLDTCVIIYEIDKPASSRMTIKGAHLG 579
           ++W+P +S                     + +GS D  + ++++       MT+ G H  
Sbjct: 282 ISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS-TGMCLMTLVG-HDN 339
Query: 580 GVYGLAFTDEHS----VVSSGEDACVRVW 604
            V G+ F   HS    ++S  +D  +RVW
Sbjct: 340 WVRGVLF---HSGGKFILSCADDKTLRVW 365

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
           N Y G P K   +  GH++FV+ +  S +    IS S DK   ++D +T           
Sbjct: 62  NGYFGIPHK---ALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV--- 115
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDI 262
           GH+  VY+V++SPD +Q+L+A A++  K+W+I
Sbjct: 116 GHQSEVYSVAFSPDNRQILSAGAEREIKLWNI 147

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/167 (23%), Positives = 75/167 (44%), Gaps = 14/167 (8%)
Query: 450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVS----- 504
           V + A +PD  + +    + ++++++I G+     A  E H   VS +RYSP +      
Sbjct: 121 VYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKV 180
Query: 505 -----MFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVI 559
                 FAS   +    VW+  + +++      H + +N L+ SPN   +ATG  D  ++
Sbjct: 181 QPFAPYFASVGWDGRLKVWN-TNFQIRY-TFKAHESNVNHLSISPNGKYIATGGKDKKLL 238
Query: 560 IYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 606
           I++I      +          +  +AF  +   V+ G D  V+++ L
Sbjct: 239 IWDILNLTYPQREFDAG--STINQIAFNPKLQWVAVGTDQGVKIFNL 283

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 174 EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK 233
           E P F   L  RGH   V  V  S  G+  +S S D   I++D      +  LS   GH 
Sbjct: 258 ENPYFVGVL--RGHXASVRTV--SGHGNIVVSGSYDNTLIVWDVAQXKCLYILS---GHT 310
Query: 234 GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293
             +Y+  +  + K+ ++AS D + ++WD+    +G+L  TL    +      LVG L  +
Sbjct: 311 DRIYSTIYDHERKRCISASXDTTIRIWDLE---NGELXYTLQGHTA------LVGLLRLS 361
Query: 294 D-FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344
           D FLV  +  G+I  + AND  +   + S H  N++A+T   +   +++S S
Sbjct: 362 DKFLVSAAADGSIRGWDANDYSR---KFSYHHTNLSAITTFYVSDNILVSGS 410

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 83/172 (48%), Gaps = 20/172 (11%)
Query: 174 EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK 233
           E P F   L  RGH   V  V  S  G+  +S S D   I++D      +  LS   GH 
Sbjct: 258 ENPYFVGVL--RGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS---GHT 310
Query: 234 GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293
             +Y+  +  + K+ ++AS D + ++WD+    +G+L  TL    +      LVG L  +
Sbjct: 311 DRIYSTIYDHERKRCISASMDTTIRIWDLE---NGELMYTLQGHTA------LVGLLRLS 361
Query: 294 D-FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS 344
           D FLV  +  G+I  + AND  +   + S H  N++A+T   +   +++S S
Sbjct: 362 DKFLVSAAADGSIRGWDANDYSR---KFSYHHTNLSAITTFYVSDNILVSGS 410

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNF-YEGPPFKFKL---SHRGHSNFVNC 193
           G  +GH+  V S A    +P  + +   D  L+++   G   KF +   S +GHS+ V  
Sbjct: 5   GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
              + DG+  +S S DK   ++D  T +         GHK  V +V        +++ S 
Sbjct: 65  CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 121
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
           DK+ KVW I     G+   TL           +V     +D  V +   G   +  A +L
Sbjct: 122 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 177
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
            +  ++    GH  N+  LT  + D  +I S+  DG I+ W
Sbjct: 178 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 217

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
           I    S  I GS+D  ++V++I+G  L   A L  H   VS +R  P+       V++ +
Sbjct: 109 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 165
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
           +G+ ++    W+    +++  + + H + IN L  SP+ +++A+   D  ++++ +   A
Sbjct: 166 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 220
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
           + +     +    V+ LAF+     +++     ++V+ L P 
Sbjct: 221 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 262

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 75/161 (46%), Gaps = 13/161 (8%)
Query: 458 DGSEAII--GSQDGKLRVYSIRGDTLTEEAVLEK--HRGAVSVIRYSPDVSMFASGDVNR 513
           D S+ I+  GS D K+++ S++ D  T   VL++  H+ A+  + + P  S+ A+G  + 
Sbjct: 21  DFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDS 80
Query: 514 EAIVW------DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
              +W      DR      L  +  H   +  +AWS +   +AT S D  V I+E D+  
Sbjct: 81  TVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESG 140
Query: 568 SSR--MTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR 605
                +++   H   V  + +   E  + SS  D  VR+W+
Sbjct: 141 EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWK 181

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKL---SHRGHSNFVNC 193
           G  +GH+  V S A    +P  + +   D  +  ++  G   KF +   S +GHS+ V  
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
              + DG+  +S S DK   ++D  T +         GHK  V +V        +++ S 
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
           DK+ KVW I     G+   TL           +V     +D  V +   G   +  A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
            +  ++    GH  N+  LT  + D  +I S+  DG I+ W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 223

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
           I    S  I GS+D  ++V++I+G  L   A L  H   VS +R  P+       V++ +
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
           +G+ ++    W+    +++  + + H + IN L  SP+ +++A+   D  ++++ +   A
Sbjct: 172 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
           + +     +    V+ LAF+     +++     ++V+ L P 
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNF-YEGPPFKFKL---SHRGHSNFVNC 193
           G  +GH+  V S A    +P  + +   D  L+++   G   KF +   S +GHS+ V  
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
              + DG+  +S S DK   ++D  T +         GHK  V +V        +++ S 
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
           DK+ KVW I     G+   TL           +V     +D  V +   G   +  A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
            +  ++    GH  N+  LT  + D  +I S+  DG I+ W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 223

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
           I    S  I GS+D  ++V++I+G  L   A L  H   VS +R  P+       V++ +
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
           +G+ ++    W+    +++  + + H + IN L  SP+ +++A+   D  ++++ +   A
Sbjct: 172 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
           + +     +    V+ LAF+     +++     ++V+ L P 
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNF-YEGPPFKFKL---SHRGHSNFVNC 193
           G  +GH+  V S A    +P  + +   D  L+++   G   KF +   S +GHS+ V  
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
              + DG+  +S S DK   ++D  T +         GHK  V +V        +++ S 
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
           DK+ KVW I     G+   TL           +V     +D  V +   G   +  A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
            +  ++    GH  N+  LT  + D  +I S+  DG I+ W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 223

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
           I    S  I GS+D  ++V++I+G  L   A L  H   VS +R  P+       V++ +
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
           +G+ ++    W+    +++  + + H + IN L  SP+ +++A+   D  ++++ +   A
Sbjct: 172 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
           + +     +    V+ LAF+     +++     ++V+ L P 
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 93/221 (42%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKL---SHRGHSNFVNC 193
           G  +GH+  V S A    +P  + +   D  +  ++  G   KF +   S +GHS+ V  
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
              + DG+  +S S DK   ++D  T +         GHK  V +V        +++ S 
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVMSVDIDKKASMIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
           DK+ KVW I     G+   TL           +V     +D  V +   G   +  A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
            +  ++    GH  N+  LT  + D  +I S+  DG I+ W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIMLW 223

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
           I    S  I GS+D  ++V++I+G  L   A L  H   VS +R  P+       V++ +
Sbjct: 115 IDKKASMIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
           +G+ ++    W+    +++  + + H + IN L  SP+ +++A+   D  ++++ +   A
Sbjct: 172 AGN-DKMVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
           + +     +    V+ LAF+     +++     ++V+ L P 
Sbjct: 227 AKKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/177 (26%), Positives = 79/177 (44%), Gaps = 27/177 (15%)
Query: 128 RAFMWDSGTN-----VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL 182
           +  +WD+ +N         D H+  V   +F P   F +AT   D  V  ++    K KL
Sbjct: 251 KLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKL 310
Query: 183 -SHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIG-ELSPED--------- 230
            S   H + +  V++SP     ++ S +D++  ++D     KIG E SPED         
Sbjct: 311 HSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWD---LSKIGEEQSPEDAEDGPPELL 367
Query: 231 ----GHKGSVYAVSWSPDGKQVL-TASADKSAKVWDISED--NHGKLKKTLTPSGSG 280
               GH   +   SW+P+   V+ + S D   +VW ++E+  N    + ++ P G G
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVDPEGQG 424

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
           E++ GS   D KL ++  R +  ++ +  ++ H   V+ + ++P    + A+G  ++   
Sbjct: 240 ESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVA 299
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSR----- 570
           +WD  + ++KL +   H   I  + WSP+N +++A+   D  + ++++ K    +     
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDA 359
Query: 571 -------MTIKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
                  + I G H   +   ++       + S  ED  ++VW++  N
Sbjct: 360 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMAEN 407

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------GHSN 189
           NV    GH+  VL  A+ P     IA+  ED  V  +E P     L  R       GH+ 
Sbjct: 73  NVPLVXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 190 FVNCVRFSPDGSK-FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV 248
            V  V + P      +S   D   +++D  T   +  L P D H  ++Y+V WS DG  +
Sbjct: 133 RVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSRDGALI 191
Query: 249 LTASADKSAKV 259
            T+  DK  +V
Sbjct: 192 CTSCRDKRVRV 202

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 57/131 (43%), Gaps = 9/131 (6%)
Query: 137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------GHSN 189
           NV    GH+  VL  A+ P     IA+  ED  V  +E P     L  R       GH+ 
Sbjct: 73  NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTK 132
Query: 190 FVNCVRFSPDGSK-FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV 248
            V  V + P      +S   D   +++D  T   +  L P D H  ++Y+V WS DG  +
Sbjct: 133 RVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGP-DVHPDTIYSVDWSRDGALI 191
Query: 249 LTASADKSAKV 259
            T+  DK  +V
Sbjct: 192 CTSCRDKRVRV 202

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
           E++ GS   D KL ++  R +  ++ +  ++ H   V+ + ++P    + A+G  ++   
Sbjct: 248 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 307
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMT--- 572
           +WD  + ++KL +   H   I  + WSP+N +++A+   D  + ++++ K    + T   
Sbjct: 308 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 367
Query: 573 ---------IKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
                    I G H   +   ++       + S  ED  ++VW++  N
Sbjct: 368 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 415

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
           E++ GS   D KL ++  R +  ++ +  ++ H   V+ + ++P    + A+G  ++   
Sbjct: 246 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 305
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMT--- 572
           +WD  + ++KL +   H   I  + WSP+N +++A+   D  + ++++ K    + T   
Sbjct: 306 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 365
Query: 573 ---------IKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
                    I G H   +   ++       + S  ED  ++VW++  N
Sbjct: 366 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 413

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 35/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
           E++ GS   D KL ++  R +  ++ +  ++ H   V+ + ++P    + A+G  ++   
Sbjct: 244 ESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA 303
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMT--- 572
           +WD  + ++KL +   H   I  + WSP+N +++A+   D  + ++++ K    + T   
Sbjct: 304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDA 363
Query: 573 ---------IKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
                    I G H   +   ++       + S  ED  ++VW++  N
Sbjct: 364 EDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 78/168 (46%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
           E++ GS   D KL ++  R +T ++ + +++ H   V+ + ++P    + A+G  ++   
Sbjct: 242 ESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDKPASSR----- 570
           +WD  + ++KL     H   I  + WSP+N  ++A+   D  + ++++ K    +     
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDA 361
Query: 571 -------MTIKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
                  + I G H   +   ++       + S  ED  +++W++  N
Sbjct: 362 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQIWQMAEN 409

>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR Ck0944636 Length = 372

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS 508
           P++  A   D ++  I   + ++ +Y   G+   +   L++H G V+ I ++PD +   +
Sbjct: 10  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVT 69
Query: 509 GDVNREAIVWDRVSREVKLKNMLYHTAR-INCLAWSPNNSMVATGS 553
              +R A VW    R  K   ++    R   C+ W+PN    A GS
Sbjct: 70  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 91/221 (41%), Gaps = 15/221 (6%)
Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE--GPPFKFKL---SHRGHSNFVNC 193
           G  +GH+  V S A    +P  + +   D  +  ++  G   KF +   S +GHS+ V  
Sbjct: 11  GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
              + DG+  +S S DK   ++D  T +         GHK  V +V        +++ S 
Sbjct: 71  CTLTADGAYALSASWDKTLRLWDVATGETYQRFV---GHKSDVXSVDIDKKASXIISGSR 127
Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
           DK+ KVW I     G+   TL           +V     +D  V +   G      A +L
Sbjct: 128 DKTIKVWTIK----GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNL 183
Query: 314 EKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
            +  ++    GH  N+  LT  + D  +I S+  DG I  W
Sbjct: 184 NQFQIEADFIGHNSNINTLTA-SPDGTLIASAGKDGEIXLW 223

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 15/162 (9%)
Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------VSMFA 507
           I    S  I GS+D  ++V++I+G  L   A L  H   VS +R  P+       V++ +
Sbjct: 115 IDKKASXIISGSRDKTIKVWTIKGQCL---ATLLGHNDWVSQVRVVPNEKADDDSVTIIS 171
Query: 508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA 567
           +G+ ++    W+    +++  + + H + IN L  SP+ +++A+   D  + ++ +   A
Sbjct: 172 AGN-DKXVKAWNLNQFQIE-ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNL---A 226
Query: 568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTPN 609
           + +     +    V+ LAF+     +++     ++V+ L P 
Sbjct: 227 AKKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQ 268

>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX Length = 372

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
Query: 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS 508
           P++  A   D ++  I   + ++ +Y   G+   +   L++H G V+ + ++PD +   +
Sbjct: 10  PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 69
Query: 509 GDVNREAIVWDRVSREVKLKNMLYHTAR-INCLAWSPNNSMVATGS 553
              +R A VW    R  K   ++    R   C+ W+PN    A GS
Sbjct: 70  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS 115

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 32/246 (13%)
Query: 380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVL----- 434
           IV++  D  I    L  D   Y      G   + L+   H+ E V++S+D    L     
Sbjct: 398 IVSASRDKSIILWKLTKDDKAY------GVAQRRLTGHSHFVEDVVLSSDGQFALSGSWD 451
Query: 435 --LRGAEVVSTINLRF------PVTASAIAPDGSEAIIGSQDGKLRVYSIRGD---TLTE 483
             LR  ++ + ++ R        V + A + D  + +  S+D  +++++  G+   T++E
Sbjct: 452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISE 511
Query: 484 EAVLEKHRGAVSVIRYSPDV--SMFASGDVNREAIVWDRVSREVKLKNMLY-HTARINCL 540
               E HR  VS +R+SP+       S   ++   VW+      KL++ L  HT  ++ +
Sbjct: 512 GG--EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNL--SNCKLRSTLAGHTGYVSTV 567
Query: 541 AWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDAC 600
           A SP+ S+ A+G  D  V+++++   A  +          ++ L F+     + +  +  
Sbjct: 568 AVSPDGSLCASGGKDGVVLLWDL---AEGKKLYSLEANSVIHALCFSPNRYWLCAATEHG 624
Query: 601 VRVWRL 606
           +++W L
Sbjct: 625 IKIWDL 630

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 57  AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD---LQWSPDGL 113
           ++ A V   S N   ++S   SG +     H+  V +     LSG   +   L+W+PDG 
Sbjct: 107 SHSARVGSLSWNSYILSSGSRSGHIH---HHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 163
Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVG------EFDGHSRRVLSCAFKPSRPFRIATCG-- 165
            + + G+    +LV   +W S    G       F  H   V + A+ P +   +AT G  
Sbjct: 164 HLASGGN---DNLVN--VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218
Query: 166 EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS--SDKKGIIYDGKTADKI 223
            D  +  +         +   HS  V  + +SP   + IS    +  + +I+   T  K+
Sbjct: 219 SDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 277
Query: 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
            EL    GH   V +++ SPDG  V +A+AD++ ++W   E
Sbjct: 278 AEL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 468 DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL 527
           D  + ++S     + +   +E+    +S + +  + +  A G  + E  +WD V ++ +L
Sbjct: 44  DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-VQQQKRL 102
Query: 528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT 587
           +NM  H+AR+  L+W  N+ ++++GS    +  +++        T+ G H   V GL + 
Sbjct: 103 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWA 159
Query: 588 -DEHSVVSSGEDACVRVWRLTP 608
            D   + S G D  V VW   P
Sbjct: 160 PDGRHLASGGNDNLVNVWPSAP 181

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 23/215 (10%)
Query: 188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ 247
           S  V C+++  D  K +S   D    I+D  T +    L+   GH GSV  + +  D + 
Sbjct: 133 SKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILT---GHTGSVLCLQY--DERV 185
Query: 248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISI 307
           ++T S+D + +VWD+   N G++  TL           ++   + N  +V  S   +I++
Sbjct: 186 IITGSSDSTVRVWDV---NTGEMLNTLIHHCEA-----VLHLRFNNGMMVTCSKDRSIAV 237
Query: 308 FSANDLEKSPLQ--LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK 365
           +         L+  L GH     A+ V++ D K I+S+S D  I  W        +    
Sbjct: 238 WDMASPTDITLRRVLVGHR---AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 294
Query: 366 ENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG 400
               I C    +  +V+   DN I    L   +CG
Sbjct: 295 HKRGIACLQYRDRLVVSGSSDNTI---RLWDIECG 326

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 121/262 (46%), Gaps = 46/262 (17%)
Query: 364 RKENSQ-IKCFAAIEEEIVTSGFDN--KIW-RVSLQGDQ--CGYANSIDIGSQPKDLSVA 417
           R E S+ + C    +++IV+   DN  KIW + +L+  +   G+  S+          + 
Sbjct: 129 RSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV----------LC 178
Query: 418 LHYPELVLV--STDSGVVL--LRGAEVVSTI--------NLRFPVTASAIAPDGSEAIIG 465
           L Y E V++  S+DS V +  +   E+++T+        +LRF         +    +  
Sbjct: 179 LQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF---------NNGMMVTC 229
Query: 466 SQDGKLRVYSIRGDT-LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE 524
           S+D  + V+ +   T +T   VL  HR AV+V+ +     + ASGD  R   VW+  + E
Sbjct: 230 SKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGD--RTIKVWNTSTCE 287
Query: 525 VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGL 584
             ++ +  H   I CL +   + +V +GS D  + +++I+  A  R  +   H   V  +
Sbjct: 288 F-VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR--VLEGHEELVRCI 342
Query: 585 AFTDEHSVVSSGEDACVRVWRL 606
            F D   +VS   D  ++VW L
Sbjct: 343 RF-DNKRIVSGAYDGKIKVWDL 363

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 34/168 (20%), Positives = 76/168 (45%), Gaps = 19/168 (11%)
Query: 461 EAIIGS--QDGKLRVYSIRGDTLTEEA-VLEKHRGAVSVIRYSPDVS-MFASGDVNREAI 516
           E++ GS   D KL ++  R +T ++ + +++ H   V+ + ++P    + A+G  ++   
Sbjct: 242 ESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVA 301
Query: 517 VWDRVSREVKLKNMLYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDKPASSR----- 570
           +WD  + ++KL     H   I  + WSP+N  ++A+   D  + ++++ K    +     
Sbjct: 302 LWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDA 361
Query: 571 -------MTIKGAHLGGVYGLAFTDEHS--VVSSGEDACVRVWRLTPN 609
                  + I G H   +   ++       + S  ED   ++W+   N
Sbjct: 362 EDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIXQIWQXAEN 409

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 57  AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD---LQWSPDGL 113
           ++ A V   S N   ++S   SG +     H+  V +     LSG   +   L+W+PDG 
Sbjct: 187 SHSARVGSLSWNSYILSSGSRSGHIH---HHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 243
Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVG------EFDGHSRRVLSCAFKPSRPFRIATCG-- 165
            + + G+    +LV   +W S    G       F  H   V + A+ P +   +AT G  
Sbjct: 244 HLASGGN---DNLVN--VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298
Query: 166 EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS--SDKKGIIYDGKTADKI 223
            D  +  +         +   HS  V  + +SP   + IS    +  + +I+   T  K+
Sbjct: 299 SDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 357
Query: 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
            EL    GH   V +++ SPDG  V +A+AD++ ++W   E
Sbjct: 358 AEL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 395

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 468 DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL 527
           D  + ++S     + +   +E+    +S + +  + +  A G  + E  +WD V ++ +L
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-VQQQKRL 182
Query: 528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT 587
           +NM  H+AR+  L+W  N+ ++++GS    +  +++        T+ G H   V GL + 
Sbjct: 183 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWA 239
Query: 588 -DEHSVVSSGEDACVRVWRLTP 608
            D   + S G D  V VW   P
Sbjct: 240 PDGRHLASGGNDNLVNVWPSAP 261

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/221 (25%), Positives = 96/221 (43%), Gaps = 25/221 (11%)
Query: 57  AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD---LQWSPDGL 113
           ++ A V   S N   ++S   SG +     H+  V +     LSG   +   L+W+PDG 
Sbjct: 198 SHSARVGSLSWNSYILSSGSRSGHIH---HHDVRVAEHHVATLSGHSQEVCGLRWAPDGR 254
Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVG------EFDGHSRRVLSCAFKPSRPFRIATCG-- 165
            + + G+    +LV   +W S    G       F  H   V + A+ P +   +AT G  
Sbjct: 255 HLASGGN---DNLVN--VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 309
Query: 166 EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS--SDKKGIIYDGKTADKI 223
            D  +  +         +   HS  V  + +SP   + IS    +  + +I+   T  K+
Sbjct: 310 SDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV 368
Query: 224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
            EL    GH   V +++ SPDG  V +A+AD++ ++W   E
Sbjct: 369 AEL---KGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 406

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 5/142 (3%)
Query: 468 DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL 527
           D  + ++S     + +   +E+    +S + +  + +  A G  + E  +WD V ++ +L
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD-VQQQKRL 193
Query: 528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT 587
           +NM  H+AR+  L+W  N+ ++++GS    +  +++        T+ G H   V GL + 
Sbjct: 194 RNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSG-HSQEVCGLRWA 250
Query: 588 -DEHSVVSSGEDACVRVWRLTP 608
            D   + S G D  V VW   P
Sbjct: 251 PDGRHLASGGNDNLVNVWPSAP 272

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 473 VYSIRGDTLTEEAVLEKHRGA-VSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML 531
           VY    D+ +  A+ E      V+ +++S D S  + G  N    ++D V  + KL+ M 
Sbjct: 115 VYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD-VESQTKLRTMA 173
Query: 532 YHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAF-TDEH 590
            H AR+ CL+W  N  ++++GS    +  +++        T++G H   V GLA+ +D  
Sbjct: 174 GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDGL 230
Query: 591 SVVSSGEDACVRVW 604
            + S G D  V++W
Sbjct: 231 QLASGGNDNVVQIW 244

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 99/232 (42%), Gaps = 15/232 (6%)
Query: 52  IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQW-SP 110
           I+  + + +TV     + + + S     T+R+W       L     VL G +  ++    
Sbjct: 192 IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCL----HVLMGHVAAVRCVQY 247
Query: 111 DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170
           DG R+V+   G    +V+ +  ++ T +    GH+ RV S  F       + +   D  +
Sbjct: 248 DGRRVVS---GAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDG---IHVVSGSLDTSI 301
Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
             ++        +  GH +  + +    +    +S ++D    I+D KT   +  L   +
Sbjct: 302 RVWDVETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282
            H+ +V  + ++ +   V+T+S D + K+WD+      +   TL   GSGGV
Sbjct: 360 KHQSAVTCLQFNKNF--VITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGV 409

>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor Eif3i Complex With Eif3b C-Terminus (655-700) Length = 369

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 172 FYEGPPFK-FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
           +++G   K  KL+  GH   +  V+++ +G    S S D    ++     +++G L   D
Sbjct: 17  YFQGSHMKAIKLT--GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTL---D 71
Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263
           GH G+++++      K  +T SAD S K+WD+S
Sbjct: 72  GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS 104

>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction Between The Nucleoporin Nup98 And The Mrna Export Factor Rae1 Length = 368

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTP 276
           G+T  K  ++     H G V  V WS DG +V TAS DK+AK+WD+S +   ++ +   P
Sbjct: 75  GQTIPKAQQM-----HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAP 129

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 70/356 (19%), Positives = 128/356 (35%), Gaps = 71/356 (19%)
Query: 178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY 237
            K + + +GH N V C+ +  D  + +S S D K I++D  T +K   ++        V 
Sbjct: 54  MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMP---CTWVM 110
Query: 238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV 297
           A +++P G  +     D    V+ ++ D +                              
Sbjct: 111 ACAYAPSGCAIACGGLDNKCSVYPLTFDKN------------------------------ 140
Query: 298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG 357
                         ++      ++ H   ++A +  N D + IL++S DG    W   + 
Sbjct: 141 -------------ENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALW--DVE 184
Query: 358 YGGKLQ--RKENSQIKCFAAIEEE----IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP 411
            G  LQ      + + C      E     V+ G D K     ++  QC  A      +  
Sbjct: 185 SGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA----FETHE 240
Query: 412 KDLSVALHYP--ELVLVSTDSGVVLL------RGAEVVSTINLRFPVTASAIAPDGSEAI 463
            D++   +YP  +     +D     L      R   + S  ++ F  ++   +  G    
Sbjct: 241 SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLF 300
Query: 464 IGSQDGKLRVYSI-RGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW 518
            G  D  + V+ + +G  ++   +L  H   VS +R SPD + F SG  +    VW
Sbjct: 301 AGYNDYTINVWDVLKGSRVS---ILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	609
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.9
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.86
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.86
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.84
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.84
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.82
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.82
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.82
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.81
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.78
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.76
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.75
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.67
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.67
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.65
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.65
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.63
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.62
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.57
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.56
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.55
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.54
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.52
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.49
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.49
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.48
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.46
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.46
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.46
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.45
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.4
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.39
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.36
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.36
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.34
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.34
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.32
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.32
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.26
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.26
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.25
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.25
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.21
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.19
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.19
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.19
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.18
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.16
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.15
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.11
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.08
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.07
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.05
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.02
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.0
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.0
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.96
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.95
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	98.92
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.78
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.65
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.65
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.64
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.58
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.57
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.53
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.52
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.52
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.5
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.49
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.48
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.48
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.44
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.38
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.34
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.34
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.3
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.3
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.26
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.25
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.24
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.17
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.14
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.12
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.09
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.03
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.98
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.95
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.94
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	97.92
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.9
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.89
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.88
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.86
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.85
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.84
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	97.83
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.82
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.78
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.78
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.77
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.75
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.75
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.73
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.72
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.68
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.68
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.65
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.63
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.62
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.62
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.61
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.57
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.5
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.46
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.42
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.35
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.35
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.35
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.33
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.32
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	97.31
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.29
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.24
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.18
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.17
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.1
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.03
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	96.97
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.96
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	96.9
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.83
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.72
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	96.39
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.38
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.35
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	96.0
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.93
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.77
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	95.72
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.54
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.5
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.42
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	95.39
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.97
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	94.89
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	94.87
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	94.79
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	94.45
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	94.13
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	93.99
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.92
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	93.57
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	92.37
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	92.09
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	91.16
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	90.71
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	90.69
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.96
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	89.39
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	89.14
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.97
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	88.21
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	87.37
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	84.72
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	84.36
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	82.06
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	81.95
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	81.4
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	81.19

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=4.5e-79  Score=655.74  Aligned_cols=594  Identities=30%  Similarity=0.590  Sum_probs=486.2

Q ss_pred             CcceeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEE
Q 007283            3 QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVR   82 (609)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~   82 (609)
                      ++.++|++.|..+||.+..++++|||+.|+++.++.++||++.++.....+.+|.+.|++++|||||++||||+.|++||
T Consensus         5 ~~~~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~   84 (611)
T 1nr0_A            5 SQTALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVR   84 (611)
T ss_dssp             EEEEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccEECCCCCcccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeCCCCEE
Confidence            89999999999999999999999999999999889999999998888888999999999999999999999999999999


Q ss_pred             EEcCCCCc-eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEE
Q 007283           83 IWGAHNDH-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRI  161 (609)
Q Consensus        83 vWd~~~~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i  161 (609)
                      |||+.+++ .+...+..|.++|.+++|+|||++|++++++.+. ..+++.|+.+.....+.+|...|.+++|+|+++.++
T Consensus        85 lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~-~~~v~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l  163 (611)
T 1nr0_A           85 IWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER-FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRI  163 (611)
T ss_dssp             EEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC-SEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEE
T ss_pred             EeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCc-eeEEEEeeCCCCcceecCCCCCceEEEECCCCCeEE
Confidence            99997544 3445678899999999999999999999876432 457899999888888999999999999999998789


Q ss_pred             EEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCc----CCCCccceE
Q 007283          162 ATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSP----EDGHKGSVY  237 (609)
Q Consensus       162 ~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~h~~~V~  237 (609)
                      ++|+.|+++++|+.++++....+.+|...|++++|+|||++|++++.|++|++||..+++.+..+..    ..+|.+.|.
T Consensus       164 ~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~  243 (611)
T 1nr0_A          164 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVF  243 (611)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEE
T ss_pred             EEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEE
Confidence            9999999999999999988889999999999999999999999999999999999988887655521    127999999


Q ss_pred             EEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCc
Q 007283          238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSP  317 (609)
Q Consensus       238 ~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~  317 (609)
                      +++|+|++++|++++.|++|++||+..   ++...++...  .........+.|.+..+++++.++.+++|+..... ..
T Consensus       244 ~v~~spdg~~l~s~s~D~~v~lWd~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~-~~  317 (611)
T 1nr0_A          244 GLTWSPDGTKIASASADKTIKIWNVAT---LKVEKTIPVG--TRIEDQQLGIIWTKQALVSISANGFINFVNPELGS-ID  317 (611)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEEECC--SSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTE-EE
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEeCCC---CceeeeecCC--CCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCC-cc
Confidence            999999999999999999999999873   4555555432  22334456667788899999999999999976432 33


Q ss_pred             eeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec-cccccceeEeee-eCCcEEEEeccceEEEEecc
Q 007283          318 LQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ-RKENSQIKCFAA-IEEEIVTSGFDNKIWRVSLQ  395 (609)
Q Consensus       318 ~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~  395 (609)
                      ..+.+|...|.++++++ +++++++++.|++|++|+...+...... ..+...+.++.+ .++.+++++.|+.++.|+..
T Consensus       318 ~~~~gh~~~v~~l~~sp-dg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~  396 (611)
T 1nr0_A          318 QVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAG  396 (611)
T ss_dssp             EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSS
T ss_pred             eEEcCCCCCEEEEEEeC-CCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecC
Confidence            56789999999999975 5689999999999999998765433222 234556666666 45678899999999999876


Q ss_pred             CCccccccc--cccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEE
Q 007283          396 GDQCGYANS--IDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRV  473 (609)
Q Consensus       396 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~i  473 (609)
                      .........  ..+...+..+.+..+. ..++...+..+.++.... ...+.+...+.+++++|||+++|+|+.|++|++
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~s~dg-~~~~~~~~~~v~~~~~~~-~~~~~~~~~v~~va~spdg~~lasgs~D~~v~l  474 (611)
T 1nr0_A          397 GSGVDSSKAVANKLSSQPLGLAVSADG-DIAVAACYKHIAIYSHGK-LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHV  474 (611)
T ss_dssp             SSSSCTTSCCEEECSSCEEEEEECTTS-SCEEEEESSEEEEEETTE-EEEEECSSCEEEEEECTTSCEEEEEETTSEEEE
T ss_pred             CccccccceeeeecCCCCcEEEEeCCC-cEEEEEeCceEEEEeCCc-eeeeecCCCceEEEEeCCCCEEEEeCCCCeEEE
Confidence            543211000  1112222223333222 344455666677777555 555566778999999999999999999999999


Q ss_pred             EEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee--ecCCCCceEEEEECCCCcEEEE
Q 007283          474 YSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN--MLYHTARINCLAWSPNNSMVAT  551 (609)
Q Consensus       474 w~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~--~~~h~~~i~~l~~s~d~~~l~s  551 (609)
                      |++.++.+..... .+|.+.|++|+|||||++|++++.|+++++||+.+.......  +..|...|++++||||+++||+
T Consensus       475 wd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~las  553 (611)
T 1nr0_A          475 YKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT  553 (611)
T ss_dssp             EEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred             EEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEE
Confidence            9998765543333 689999999999999999999999999999998763222221  2349999999999999999999


Q ss_pred             EeCCCeEEEEEcCCCCCcceeEeccc-cCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          552 GSLDTCVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       552 ~s~D~~v~vw~~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      |+.|++|++|+++.+.......+.+| ...|++++|+++..|+|+|.|++|++|++.
T Consensus       554 gs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          554 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             EETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             EECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCEEEEecCCCCEEEEecc
Confidence            99999999999986442222566789 899999999955559999999999999984

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=2.3e-64  Score=544.20  Aligned_cols=575  Identities=32%  Similarity=0.573  Sum_probs=474.9

Q ss_pred             CcceeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCC----ccccccccCCCC-cEEEEECC--CCCEEEEE
Q 007283            3 QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNP----LQVSIYGEHAYP-ATVARFSP--NGEWIASA   75 (609)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~----~~~~~~~~h~~~-v~~~~~sp--~g~~las~   75 (609)
                      ++.+.|++.|..+++.+..++++|+|+.|+++.++.+.||++.++    +....+.+|.+. |++++|+|  +|++||++
T Consensus         5 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~   84 (615)
T 1pgu_A            5 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG   84 (615)
T ss_dssp             EEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred             chhhccCCCCCCccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe
Confidence            688999999999999999999999999999998899999999988    777889999999 99999999  99999999


Q ss_pred             eCCCcEEEEcCCCC-------ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccE
Q 007283           76 DVSGTVRIWGAHND-------HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRV  148 (609)
Q Consensus        76 ~~d~~i~vWd~~~~-------~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  148 (609)
                      +.||+|+|||+.++       ..+...+..|...|.+++|+|||++|++++++.+. ...++.|+.+..+..+.+|...|
T Consensus        85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~v~~~d~~~~~~~~~~~~~~v  163 (615)
T 1pgu_A           85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWDSGNSLGEVSGHSQRI  163 (615)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETTTCCEEEECCSCSSCE
T ss_pred             cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC-ccEEEEEECCCcceeeecCCccE
Confidence            99999999999754       23445677889999999999999999999865432 45789999989999999999999


Q ss_pred             EEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCccc---ceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcccc
Q 007283          149 LSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSN---FVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       149 ~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~---~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      .+++|+|+++..+++++.|+.+++||..+++....+.+|..   .|++++|+|+ +++|++++.|+.+++||..+++.+.
T Consensus       164 ~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~  243 (615)
T 1pgu_A          164 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK  243 (615)
T ss_dssp             EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred             EEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeE
Confidence            99999999987799999999999999999999989999999   9999999999 9999999999999999999988776


Q ss_pred             cc-CcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE-cCCeEEEEEcC
Q 007283          225 EL-SPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW-QNDFLVIVSLG  302 (609)
Q Consensus       225 ~~-~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  302 (609)
                      .+ ....+|.+.|.+++|+ ++++|++++.|+.|++||+..   ++....+.... .........+.+ .+.++++++.+
T Consensus       244 ~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~  318 (615)
T 1pgu_A          244 YIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTT---SKCVQKWTLDK-QQLGNQQVGVVATGNGRIISLSLD  318 (615)
T ss_dssp             ECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTT---TEEEEEEECCT-TCGGGCEEEEEEEETTEEEEEETT
T ss_pred             EecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCC---CcEEEEEcCCC-CcccCceeEEEeCCCCeEEEEECC
Confidence            65 2111689999999999 999999999999999999873   45555554332 122233344444 67799999999


Q ss_pred             CcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee-CCcEE
Q 007283          303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI-EEEIV  381 (609)
Q Consensus       303 g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  381 (609)
                      +.+++|+... ......+.+|...|.++++ +.    +++++.||.|++|+..     .....+...+.++... +..++
T Consensus       319 g~i~~~d~~~-~~~~~~~~~~~~~v~~~~~-~~----l~~~~~dg~i~~w~~~-----~~~~~~~~~v~~~~~~~~~~l~  387 (615)
T 1pgu_A          319 GTLNFYELGH-DEVLKTISGHNKGITALTV-NP----LISGSYDGRIMEWSSS-----SMHQDHSNLIVSLDNSKAQEYS  387 (615)
T ss_dssp             SCEEEEETTE-EEEEEEECCCSSCEEEEET-TT----TEEEETTSCEEETTTT-----EEECCCCSCEEEEECCSTTCCE
T ss_pred             CCEEEEECCC-CcEEEEEeCCCCCEEEEEe-cC----cEEECCCCeEEEEEch-----hhcCcccCceEEEEECCCcEEE
Confidence            9999999765 2334567899999999998 43    9999999999999876     1113455667777764 56788


Q ss_pred             EEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEee--CCeeeEEeccCCceeEEEEcCCC
Q 007283          382 TSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR--GAEVVSTINLRFPVTASAIAPDG  459 (609)
Q Consensus       382 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~sp~g  459 (609)
                      +++.|+.+..|++......        .....+.+..+. ..++...+..+.++.  ..+....+.+..++.+++++  +
T Consensus       388 ~~~~d~~i~~~~~~~~~~~--------~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  456 (615)
T 1pgu_A          388 SISWDDTLKVNGITKHEFG--------SQPKVASANNDG-FTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--Q  456 (615)
T ss_dssp             EEETTTEEEETTEEEEECS--------SCEEEEEECSSS-EEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--S
T ss_pred             EEeCCCCEEEEEcccCccc--------CCceEEEEcCCC-CEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--C
Confidence            9999999999987654321        012223332322 334444556677776  56666677778889999999  8


Q ss_pred             CEEEEEeC-CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC-CCCce
Q 007283          460 SEAIIGSQ-DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY-HTARI  537 (609)
Q Consensus       460 ~~l~~gs~-dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~-h~~~i  537 (609)
                      +++++|+. |+.|++|++..+.+.. ..+.+|...|.+++|+|+++++++++.|+.+++||+.+.+.. ..+.. |...|
T Consensus       457 ~~l~~~~~~d~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-~~~~~~h~~~v  534 (615)
T 1pgu_A          457 NYVAVGLEEGNTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-TSRWAFRTSKI  534 (615)
T ss_dssp             SEEEEEETTTSCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-ECCSCCCSSCE
T ss_pred             CEEEEeecCCCeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce-eEeecCCCCce
Confidence            99999999 9999999998765432 566789999999999999999999999999999999877654 34555 99999


Q ss_pred             EEEEECC----------CCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          538 NCLAWSP----------NNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       538 ~~l~~s~----------d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      ++++|+|          ++++||+++.|++|++|++.... .......+|.+.|++++|+ +++ |+++|.|++|++|++
T Consensus       535 ~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~  612 (615)
T 1pgu_A          535 NAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM-KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  612 (615)
T ss_dssp             EEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT-CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             eEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCc-eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEee
Confidence            9999999          99999999999999999998643 3455667899999999999 667 999999999999999


Q ss_pred             cCC
Q 007283          607 TPN  609 (609)
Q Consensus       607 ~~~  609 (609)
                      +++
T Consensus       613 ~~~  615 (615)
T 1pgu_A          613 VLE  615 (615)
T ss_dssp             C--
T ss_pred             ecC
Confidence            764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=4.1e-62  Score=522.53  Aligned_cols=556  Identities=24%  Similarity=0.377  Sum_probs=437.5

Q ss_pred             cCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283           14 TERGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~   92 (609)
                      .|++....++++|||++|+++. ++.|+|||. +++.+..+.+|++.|++++|+|||++||+++.|++|+|||... + +
T Consensus        14 GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d~~i~vWd~~~-~-~   90 (577)
T 2ymu_A           14 AHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-Q-L   90 (577)
T ss_dssp             CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-C-E
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCC-C-E
Confidence            5788888999999999999875 579999996 5667778999999999999999999999999999999999643 3 3


Q ss_pred             eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      ...+..|...|.+++|+|||++|++++.+.   .+++|+.. ........+|...|..+.++|++.. +++++.+..+.+
T Consensus        91 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~---~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~  165 (577)
T 2ymu_A           91 LQTLTGHSSSVRGVAFSPDGQTIASASDDK---TVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQT-IASASDDKTVKL  165 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTS---CEEEEETT-CCEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEE
T ss_pred             EEEEECCCCCEEEEEECCCCCEEEEEcCCC---ceeecccc-cceeeeccCCCCceeeeeeecCCcc-ceecccccceec
Confidence            456888999999999999999999988654   34555543 3445667889999999999999885 888889999999


Q ss_pred             EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       173 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      |+... ........|...|.++.|+|++++|++++.|+.+++||. +++.+..+   .+|.+.|.+++|+|++++|++++
T Consensus       166 ~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~-~~~~~~~~---~~~~~~v~~~~~s~dg~~l~~~~  240 (577)
T 2ymu_A          166 WNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTL---TGHSSSVRGVAFSPDGQTIASAS  240 (577)
T ss_dssp             ECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEE---ECCSSCEEEEEECTTSSCEEEEE
T ss_pred             cccce-eeeeeccCCCcceeeeeecCCCCEEEEEcCCCEEEEEeC-CCcEEEEE---ecCCCCEEEEEECCCCCEEEEEe
Confidence            98543 344556678999999999999999999999999999995 45555444   37899999999999999999999


Q ss_pred             CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEE
Q 007283          253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTAL  330 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~  330 (609)
                      .|+.|++||..    ++....+... .    ..+..+.+.  +..+++++.++.+++|+.+.  .....+.+|...|.++
T Consensus       241 ~d~~i~~w~~~----~~~~~~~~~~-~----~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~--~~~~~~~~h~~~v~~~  309 (577)
T 2ymu_A          241 DDKTVKLWNRN----GQLLQTLTGH-S----SSVNGVAFRPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGV  309 (577)
T ss_dssp             TTSCEEEECTT----SCEEEEECCC-S----SCEEEEEECTTSSEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEE
T ss_pred             CCCEEEEEeCC----CCEEEEEecC-C----CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC--cEEEEEecCCCCeEEE
Confidence            99999999964    3445444322 1    122333443  55899999999999998642  3345678999999999


Q ss_pred             EEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee--CCcEEEEeccceEEEEeccCCccccccccccC
Q 007283          331 TVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI--EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIG  408 (609)
Q Consensus       331 ~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  408 (609)
                      ++++ ++..+++++.|++|++|+......... ..+...+.++++.  +..+++++.++.+.+|+......  .....+.
T Consensus       310 ~~~~-~~~~l~t~~~d~~i~~w~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~--~~~~~~~  385 (577)
T 2ymu_A          310 AFSP-DGQTIASASDDKTVKLWNRNGQHLQTL-TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--QTLTGHS  385 (577)
T ss_dssp             EECT-TSSEEEEEETTSCEEEEETTSCEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCCEE--EEEECCS
T ss_pred             EECC-CCCEEEEEeCCCeEEEEeCCCCeeEEE-eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCCEE--EEecCCC
Confidence            9875 557999999999999998765433222 2345566666663  45688888999999998644321  1111223


Q ss_pred             CCCceeEeeccCCcEEEEEecccEEEee-CCeeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEE
Q 007283          409 SQPKDLSVALHYPELVLVSTDSGVVLLR-GAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV  486 (609)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~  486 (609)
                      .....+.+.++...++..+.+..+.+|+ ..+....+ .+..++.+++++||++++++++.|++|++|+.....   ...
T Consensus       386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~---~~~  462 (577)
T 2ymu_A          386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL---LQT  462 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCE---EEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCCCE---EEE
Confidence            3344455554443333334444566665 23333333 366789999999999999999999999999975443   356


Q ss_pred             EecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          487 LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       487 ~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      +.+|...|.+++|+||++++++++.|++|++||... + .+..+.+|...|++++|+||+++||+++.|++|++||... 
T Consensus       463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~-  539 (577)
T 2ymu_A          463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-  539 (577)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-EEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS-
T ss_pred             EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-EEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC-
Confidence            789999999999999999999999999999999643 3 3455778999999999999999999999999999999642 


Q ss_pred             CCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          567 ASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       567 ~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                        ..+..+.+|.+.|++++|+ |+++|+|+|.|++|++||
T Consensus       540 --~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          540 --QLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             --CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence              3455667899999999999 788999999999999997

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-57  Score=488.28  Aligned_cols=522  Identities=25%  Similarity=0.390  Sum_probs=409.5

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      ...|.||++.|++++|||||++||||+.|++|+|||. +++ +...+.+|...|.+++|+|||++|++++.+.   .+++
T Consensus         9 ~~~L~GH~~~V~~~a~spdg~~las~~~d~~v~iWd~-~~~-~~~~l~gh~~~V~~l~fspdg~~las~~~d~---~i~v   83 (577)
T 2ymu_A            9 RNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDDK---TVKL   83 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSC-EEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEE
T ss_pred             eeEECCCCCcEEEEEECCCCCEEEEEeCCCEEEEEEC-CCC-EEEEEeCCCCCEEEEEECCCCCEEEEEeCCC---EEEE
Confidence            3558999999999999999999999999999999996 444 3457889999999999999999999988644   4677


Q ss_pred             EEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283          130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                      |++ .+..+..+.+|...|.+++|+|++.. +++++.|+.+++|+.... ......+|...+.++.++|++..+++++.+
T Consensus        84 Wd~-~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~d~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  160 (577)
T 2ymu_A           84 WNR-NGQLLQTLTGHSSSVRGVAFSPDGQT-IASASDDKTVKLWNRNGQ-LLQTLTGHSSSVWGVAFSPDGQTIASASDD  160 (577)
T ss_dssp             EET-TSCEEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTCC-EEEEECCCSSCEEEEEECTTSSCEEEEETT
T ss_pred             EEC-CCCEEEEEECCCCCEEEEEECCCCCE-EEEEcCCCceeecccccc-eeeeccCCCCceeeeeeecCCccceecccc
Confidence            775 45678889999999999999999985 999999999999996543 445567889999999999999999999999


Q ss_pred             CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE
Q 007283          210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC  289 (609)
Q Consensus       210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      +.+.+|+..... ....   ..|...|.++.|+|++++|++++.|+.|++||..    ++....+....     ..+..+
T Consensus       161 ~~~~~~~~~~~~-~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~----~~~~~~~~~~~-----~~v~~~  227 (577)
T 2ymu_A          161 KTVKLWNRNGQL-LQTL---TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRN----GQLLQTLTGHS-----SSVRGV  227 (577)
T ss_dssp             SEEEEECTTSCE-EEEE---ECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT----SCEEEEEECCS-----SCEEEE
T ss_pred             cceeccccceee-eeec---cCCCcceeeeeecCCCCEEEEEcCCCEEEEEeCC----CcEEEEEecCC-----CCEEEE
Confidence            999999855433 2222   3688899999999999999999999999999964    44555543221     122333


Q ss_pred             EEc--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccc
Q 007283          290 LWQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKEN  367 (609)
Q Consensus       290 ~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~  367 (609)
                      .+.  +.++++++.++.+++|+.+  ......+.+|...|.++++.+ ++..+++++.|+.|++|+......... ..+.
T Consensus       228 ~~s~dg~~l~~~~~d~~i~~w~~~--~~~~~~~~~~~~~v~~v~~~~-d~~~l~~~~~d~~i~~w~~~~~~~~~~-~~h~  303 (577)
T 2ymu_A          228 AFSPDGQTIASASDDKTVKLWNRN--GQLLQTLTGHSSSVNGVAFRP-DGQTIASASDDKTVKLWNRNGQLLQTL-TGHS  303 (577)
T ss_dssp             EECTTSSCEEEEETTSCEEEECTT--SCEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTSCEEEEE-CCCS
T ss_pred             EECCCCCEEEEEeCCCEEEEEeCC--CCEEEEEecCCCCEEEEEEcC-CCCEEEEEeCCCEEEEEeCCCcEEEEE-ecCC
Confidence            444  5589999999999999854  233456789999999999874 557999999999999998654322222 2345


Q ss_pred             cceeEeeee--CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEeccc-EEEee-CCeeeEE
Q 007283          368 SQIKCFAAI--EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSG-VVLLR-GAEVVST  443 (609)
Q Consensus       368 ~~~~~~~~~--~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~  443 (609)
                      ..+..+.+.  +..+++++.|+.+..|+.......  ...........+.+.++. ..++....++ +.++. ..+....
T Consensus       304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~--~~~~~~~~v~~~~~s~~g-~~l~~~~~dg~v~~~~~~~~~~~~  380 (577)
T 2ymu_A          304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ--TLTGHSSSVWGVAFSPDG-QTIASASDDKTVKLWNRNGQLLQT  380 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEE--EECCCSSCEEEEEECTTS-SEEEEEETTSEEEEEETTCCEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeE--EEeCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEcCCCCEEEE
Confidence            566666663  456888999999999987654321  111112223333443333 4455554444 55664 3333333


Q ss_pred             e-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283          444 I-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       444 ~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~  522 (609)
                      + .+..++.+++++|||+++++|+.|+.|++|+.....   ...+.+|...|.+++|+||++++++++.|+++++||...
T Consensus       381 ~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~  457 (577)
T 2ymu_A          381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL---LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG  457 (577)
T ss_dssp             EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTCCE---EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred             ecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCE---EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence            3 356789999999999999999999999999965432   356789999999999999999999999999999999644


Q ss_pred             CceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcE
Q 007283          523 REVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACV  601 (609)
Q Consensus       523 ~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i  601 (609)
                      .  .+..+..|...|++++|+||+++||+++.|++|++|+...   .......+|...|++++|+ ++++|++++.|++|
T Consensus       458 ~--~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v  532 (577)
T 2ymu_A          458 Q--LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTV  532 (577)
T ss_dssp             C--EEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEE
T ss_pred             C--EEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEE
Confidence            3  3445678999999999999999999999999999999642   3345567899999999999 78899999999999


Q ss_pred             EEEEcc
Q 007283          602 RVWRLT  607 (609)
Q Consensus       602 ~~W~~~  607 (609)
                      ++|+++
T Consensus       533 ~lwd~~  538 (577)
T 2ymu_A          533 KLWNRN  538 (577)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            999974

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=6e-56  Score=476.13  Aligned_cols=525  Identities=18%  Similarity=0.205  Sum_probs=391.0

Q ss_pred             cCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCc--cccccccCCCCcEEEEECCCCCEEEEEeCC----CcEEEEcC
Q 007283           14 TERGRGILISGHPKSNSILYTN-GRSVIILDLSNPL--QVSIYGEHAYPATVARFSPNGEWIASADVS----GTVRIWGA   86 (609)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~--~~~~~~~h~~~v~~~~~sp~g~~las~~~d----~~i~vWd~   86 (609)
                      .|.+....++++|+|++|+... ++.|+|||+.++.  ....+.+|.+.|.+++|+|||++||+++.+    ++|++||.
T Consensus        57 ~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~  136 (611)
T 1nr0_A           57 EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT  136 (611)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT
T ss_pred             CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC
Confidence            4667778999999999999874 6899999996543  334578899999999999999999988765    47888885


Q ss_pred             CCCceeeEEEeecccceeEEEECCCCC-EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEec
Q 007283           87 HNDHVLKKEFRVLSGRIDDLQWSPDGL-RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCG  165 (609)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~  165 (609)
                      .  +. ...+.+|.+.|.+++|+|++. +|++++++.   .+++|+....+....+.+|...|.+++|+|++. .+++|+
T Consensus       137 ~--~~-~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~---~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~-~las~s  209 (611)
T 1nr0_A          137 G--TS-NGNLTGQARAMNSVDFKPSRPFRIISGSDDN---TVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGS-LFASTG  209 (611)
T ss_dssp             C--CB-CBCCCCCSSCEEEEEECSSSSCEEEEEETTS---CEEEEETTTBEEEEEECCCSSCEEEEEECTTSS-EEEEEE
T ss_pred             C--CC-cceecCCCCCceEEEECCCCCeEEEEEeCCC---eEEEEECCCCeEeeeeccccCceEEEEECCCCC-EEEEEE
Confidence            3  22 235778999999999999987 577777654   477888777777888999999999999999998 599999


Q ss_pred             CCCeEEEEeCCCCceeeecc-------CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEE
Q 007283          166 EDFLVNFYEGPPFKFKLSHR-------GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYA  238 (609)
Q Consensus       166 ~d~~i~~~~~~~~~~~~~~~-------~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~  238 (609)
                      .|+.+++|+..+++....+.       +|...|.+++|+|+|++|++++.|+++++||..+++.+..+.....+...+..
T Consensus       210 ~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~  289 (611)
T 1nr0_A          210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLG  289 (611)
T ss_dssp             TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEE
T ss_pred             CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEE
Confidence            99999999988887766663       79999999999999999999999999999999998877666433345556777


Q ss_pred             EEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc--CCeEEEEEcCCcEEEEeCCCCCCC
Q 007283          239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVSLGGTISIFSANDLEKS  316 (609)
Q Consensus       239 l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~  316 (609)
                      +.|  ++..+++++.|+++++|+...   ++....+.. +    ...+..+.++  +.++++++.|+++++|++......
T Consensus       290 ~~~--~~~~l~s~s~d~~i~~~~~~~---~~~~~~~~g-h----~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~  359 (611)
T 1nr0_A          290 IIW--TKQALVSISANGFINFVNPEL---GSIDQVRYG-H----NKAITALSSSADGKTLFSADAEGHINSWDISTGISN  359 (611)
T ss_dssp             EEE--CSSCEEEEETTCCEEEEETTT---TEEEEEECC-C----SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred             EEE--cCCEEEEEeCCCcEEEEeCCC---CCcceEEcC-C----CCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCcee
Confidence            777  678899999999999999863   333333321 1    2233444444  568999999999999998754321


Q ss_pred             ceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccccee---ccccccceeEeeee-CCcEEEEeccceEEEE
Q 007283          317 PLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL---QRKENSQIKCFAAI-EEEIVTSGFDNKIWRV  392 (609)
Q Consensus       317 ~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~d~~i~~~  392 (609)
                      .....+|...|.++++++.  ..+++++.|+++++|+.........   ..........+.+. ++..+....+..+..|
T Consensus       360 ~~~~~~h~~~v~~~~~s~~--~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~  437 (611)
T 1nr0_A          360 RVFPDVHATMITGIKTTSK--GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY  437 (611)
T ss_dssp             ECSSCSCSSCEEEEEECTT--SCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEE
T ss_pred             eecccCCcceEEEEEECCC--CcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEE
Confidence            1112579999999998743  5789999999999998764321110   00111223334442 2223333356677777


Q ss_pred             eccCCccccccccccCCCCceeEeeccCCcEEEEEe-cccEEEee--CCee--eEEeccCCceeEEEEcCCCCEEEEEeC
Q 007283          393 SLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVST-DSGVVLLR--GAEV--VSTINLRFPVTASAIAPDGSEAIIGSQ  467 (609)
Q Consensus       393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~--~~~~~~~~~~~~~~~sp~g~~l~~gs~  467 (609)
                      +...     .....+......+.+.+++ ..++.+. +..+.+|+  +...  .....+...+.+++|+|||++||+++.
T Consensus       438 ~~~~-----~~~~~~~~~v~~va~spdg-~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~~v~fspdg~~las~s~  511 (611)
T 1nr0_A          438 SHGK-----LTEVPISYNSSCVALSNDK-QFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ  511 (611)
T ss_dssp             ETTE-----EEEEECSSCEEEEEECTTS-CEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET
T ss_pred             eCCc-----eeeeecCCCceEEEEeCCC-CEEEEeCCCCeEEEEEccCCceeeeeccCCCCceEEEEECCCCCEEEEEcC
Confidence            6221     1111222333444555544 3444444 44566764  2222  223446778999999999999999999


Q ss_pred             CCcEEEEEecC-CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE-eeecCC-CCceEEEEECC
Q 007283          468 DGKLRVYSIRG-DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL-KNMLYH-TARINCLAWSP  544 (609)
Q Consensus       468 dg~i~iw~~~~-~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~~~h-~~~i~~l~~s~  544 (609)
                      |++|++|++.. +.+.......+|.+.|.+++|+|||++||+|+.|++|++||+.+..... ..+.+| ...|++++|+|
T Consensus       512 d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~  591 (611)
T 1nr0_A          512 SRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN  591 (611)
T ss_dssp             TSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred             CCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcC
Confidence            99999999976 4432211234599999999999999999999999999999987754322 446689 89999999999


Q ss_pred             CCcEEEEEeCCCeEEEEEcC
Q 007283          545 NNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       545 d~~~l~s~s~D~~v~vw~~~  564 (609)
                      |++ |++++.|++|++|+++
T Consensus       592 d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          592 ETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TTE-EEEEETTSCEEEEECC
T ss_pred             CCE-EEEecCCCCEEEEecc
Confidence            999 9999999999999973

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=3.9e-55  Score=509.68  Aligned_cols=536  Identities=17%  Similarity=0.249  Sum_probs=425.3

Q ss_pred             cCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283           14 TERGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~   92 (609)
                      +|.+....+.++|+|+.|+++. ++.|.+||+.++..+..+.+|.+.|.+++|+|+|++||+++.|++|+|||+.+++. 
T Consensus       613 ~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~-  691 (1249)
T 3sfz_A          613 PHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKL-  691 (1249)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-
T ss_pred             cccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCce-
Confidence            4677888999999999998864 58999999999998888999999999999999999999999999999999998764 


Q ss_pred             eEEEeecccceeEEEECCC--CCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283           93 KKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV  170 (609)
Q Consensus        93 ~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i  170 (609)
                      ...+..|...|.+++|+|+  +..+++++.+.   .+++|+++.+..+..+.+|...|.+++|+|++. .+++|+.|+.+
T Consensus       692 ~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~---~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~dg~v  767 (1249)
T 3sfz_A          692 VHTYDEHSEQVNCCHFTNKSNHLLLATGSNDF---FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE-LLASCSADGTL  767 (1249)
T ss_dssp             EEEEECCSSCEEEEEECSSSSCCEEEEEETTS---CEEEEETTSSSEEEEECCCSSCEEEEEECSSTT-EEEEEESSSEE
T ss_pred             EEEEcCCCCcEEEEEEecCCCceEEEEEeCCC---eEEEEECCCcchhheecCCCCCEEEEEEecCCC-EEEEEECCCeE
Confidence            4567889999999999995  44666665433   478899889999999999999999999999998 49999999999


Q ss_pred             EEEeCCCCceeee-------------------------------------------------------ccCcccceEEEE
Q 007283          171 NFYEGPPFKFKLS-------------------------------------------------------HRGHSNFVNCVR  195 (609)
Q Consensus       171 ~~~~~~~~~~~~~-------------------------------------------------------~~~h~~~v~~l~  195 (609)
                      ++||....+....                                                       ..+|...|.+++
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~  847 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCD  847 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEE
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEE
Confidence            9998654432111                                                       126788999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCC---CceEE
Q 007283          196 FSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNH---GKLKK  272 (609)
Q Consensus       196 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~---~~~~~  272 (609)
                      |+|++..+++++.|+.+.+||..++..+..+   .+|.+.|.+++|+|++++|++++.|++|++|++.....   .....
T Consensus       848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~---~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~  924 (1249)
T 3sfz_A          848 FSPYDHLAVIALSQYCVELWNIDSRLKVADC---RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQ  924 (1249)
T ss_dssp             ECSSTTEEEEECSSSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEEEcCCCceeeec---CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccc
Confidence            9999999999999999999999998877665   37999999999999999999999999999999742100   00000


Q ss_pred             E--------------ecc--------CCCCC----ccceEEEEEE--cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCC
Q 007283          273 T--------------LTP--------SGSGG----VDDMLVGCLW--QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHM  324 (609)
Q Consensus       273 ~--------------~~~--------~~~~~----~~~~~~~~~~--~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~  324 (609)
                      .              ...        .....    ....+..+.+  ++.++++++.+|.+++|+.... .....+.+|.
T Consensus       925 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~-~~~~~~~~h~ 1003 (1249)
T 3sfz_A          925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN-RVFSSGVGHK 1003 (1249)
T ss_dssp             EEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT-SCEEECCCCS
T ss_pred             eeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC-ceeeecccCC
Confidence            0              000        00000    0111223333  3568999999999999998654 3345677899


Q ss_pred             CCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee-eCCcEEEEeccceEEEEeccCCcccccc
Q 007283          325 KNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA-IEEEIVTSGFDNKIWRVSLQGDQCGYAN  403 (609)
Q Consensus       325 ~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~~~~~~~~~~~~~~  403 (609)
                      ..|.++++++ +++.+++++.||.|++|+...+..... ..+...+.++.. .+..+++++.|+.+..|++.....    
T Consensus      1004 ~~v~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~-~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~---- 1077 (1249)
T 3sfz_A         1004 KAVRHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYVFL-QAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRI---- 1077 (1249)
T ss_dssp             SCCCCEEECS-SSSCEEEECSSSBEEEEETTTTEEECC-BCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCC----
T ss_pred             CceEEEEECC-CCCEEEEEcCCCEEEEEECCCCceEEE-ecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCce----
Confidence            9999999875 457899999999999999876543322 234555666665 355688888899999998754431    


Q ss_pred             ccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeee
Q 007283          404 SIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLT  482 (609)
Q Consensus       404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~  482 (609)
                                                           ...+ .+...+.+++++|+++++++|+.|++|++|++..+.. 
T Consensus      1078 -------------------------------------~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~- 1119 (1249)
T 3sfz_A         1078 -------------------------------------ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP- 1119 (1249)
T ss_dssp             -------------------------------------CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-
T ss_pred             -------------------------------------eEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-
Confidence                                                 0111 1335688899999999999999999999999987654 


Q ss_pred             eeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe--------eecCCCCceEEEEECCCCcEEEEEeC
Q 007283          483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK--------NMLYHTARINCLAWSPNNSMVATGSL  554 (609)
Q Consensus       483 ~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~--------~~~~h~~~i~~l~~s~d~~~l~s~s~  554 (609)
                       ...+.+|.+.|.+++|+|||+++++|+.|++|++||+.+++....        ....|...|++++||||+++|++++ 
T Consensus      1120 -~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~- 1197 (1249)
T 3sfz_A         1120 -LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG- 1197 (1249)
T ss_dssp             -SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES-
T ss_pred             -eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC-
Confidence             356788999999999999999999999999999999887654221        1246889999999999999999885 


Q ss_pred             CCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          555 DTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       555 D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                       |+|++||+..+.  ......+|...|++++|+ ++.+|++++.||.+.+|++.
T Consensus      1198 -g~v~vwd~~~g~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A         1198 -GYLKWWNVATGD--SSQTFYTNGTNLKKIHVSPDFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp             -SSEEEBCSSSCB--CCCCCCCSSCCCCCCEECSSSCCEEEECTTCCEEEECCC
T ss_pred             -CeEEEEECCCCc--eeeeeeccCCcccEEEECCCCCEEEEecCCcEEEEEeec
Confidence             899999997643  234456789999999999 77899999999999999974

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-51  Score=458.00  Aligned_cols=546  Identities=13%  Similarity=0.109  Sum_probs=369.7

Q ss_pred             CCCccCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC
Q 007283           10 CVPSTERGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHN   88 (609)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~   88 (609)
                      .....+.+....++++|+|+.|+.+. ++.|+||+..+.+.... ..|...|.+++|+| |++||+++.|++|+|||+.+
T Consensus        11 ~~~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~-~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~   88 (902)
T 2oaj_A           11 TNKYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIK-LEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYS   88 (902)
T ss_dssp             EEEEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEE-CSSCCCEEEEEEET-TTEEEEEETTCEEEEEETTT
T ss_pred             ccccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEE-cCCCCCEEEEEEcC-CCEEEEEECcCeEEEEECCC
Confidence            33446677888999999999998874 68999999877655443 35788999999999 99999999999999999998


Q ss_pred             CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCee-----------EEEecCCccEEEEEEeeCC
Q 007283           89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV-----------GEFDGHSRRVLSCAFKPSR  157 (609)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~h~~~v~~~~~~p~~  157 (609)
                      ++.+. .+. +.+.|.+++|+|++++|++.+.+.   .+++|+.+.+...           ..+.+|...|.+++|+|++
T Consensus        89 ~~~~~-~~~-~~~~V~~v~~sp~g~~l~sgs~dg---~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~  163 (902)
T 2oaj_A           89 QKVLT-TVF-VPGKITSIDTDASLDWMLIGLQNG---SMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRD  163 (902)
T ss_dssp             CSEEE-EEE-CSSCEEEEECCTTCSEEEEEETTS---CEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTE
T ss_pred             CcEEE-EEc-CCCCEEEEEECCCCCEEEEEcCCC---cEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCC
Confidence            76543 343 667899999999999999877543   4677877766542           2236789999999999987


Q ss_pred             CeEEEEecCCCeEEEEeCCCCceeeeccCc------------------ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007283          158 PFRIATCGEDFLVNFYEGPPFKFKLSHRGH------------------SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       158 ~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h------------------~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~  219 (609)
                      ...+++|+.|+.+ +||....+....+.+|                  ...|++++|+|+|++|++++.|++|++||.++
T Consensus       164 ~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~  242 (902)
T 2oaj_A          164 IGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS  242 (902)
T ss_dssp             EEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred             CCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence            6679999999999 9999888777666554                  57899999999999999999999999999998


Q ss_pred             Cccccc--cCcCC-------------CCccceEEEEEC----CCC-CeEEEEeCC-----CcEEEeecccCC--------
Q 007283          220 ADKIGE--LSPED-------------GHKGSVYAVSWS----PDG-KQVLTASAD-----KSAKVWDISEDN--------  266 (609)
Q Consensus       220 ~~~~~~--~~~~~-------------~h~~~V~~l~~s----pd~-~~l~s~s~d-----~~i~iwd~~~~~--------  266 (609)
                      ++.+..  +....             .|.+.|++++|+    |++ .+|++++.|     ..+++|++....        
T Consensus       243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~  322 (902)
T 2oaj_A          243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYE  322 (902)
T ss_dssp             CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHH
T ss_pred             CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchh
Confidence            876542  21111             245679999995    554 567777766     378899853110        


Q ss_pred             -------CCceEEEeccCCCCCccceEEEEE--------EcCCeEEEEEcCCcEEEEeCCCCCCC------ceeeeCCCC
Q 007283          267 -------HGKLKKTLTPSGSGGVDDMLVGCL--------WQNDFLVIVSLGGTISIFSANDLEKS------PLQLSGHMK  325 (609)
Q Consensus       267 -------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~g~i~~~~~~~~~~~------~~~~~~h~~  325 (609)
                             ..+....+.......+....+...        .++..+++++.++++++|++......      ...+.+|..
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~  402 (902)
T 2oaj_A          323 GMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRP  402 (902)
T ss_dssp             HHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTT
T ss_pred             hhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCC
Confidence                   011122222111111111111100        11236788889999999997543111      122455667


Q ss_pred             CeEEEEEecCCCCEEEEEecCCcEEEEecCc---cccceeccccccceeEe--eeeCCcEEEEeccceEEEEeccCCccc
Q 007283          326 NVTALTVLNIDPKVILSSSYDGLIVKWIQGI---GYGGKLQRKENSQIKCF--AAIEEEIVTSGFDNKIWRVSLQGDQCG  400 (609)
Q Consensus       326 ~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~---~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~  400 (609)
                      .|.++++.+.            ..++|+...   .........+...+..+  ...++.+++++.|+.|+.|++..... 
T Consensus       403 ~v~~~~~s~~------------~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~-  469 (902)
T 2oaj_A          403 LATTSMAASV------------PNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDI-  469 (902)
T ss_dssp             BEEEEEEEEE------------EHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTT-
T ss_pred             CeeEEEEEEc------------CHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccc-
Confidence            7777766421            001232110   00000000011111111  22344566667777777776654321 


Q ss_pred             cccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe
Q 007283          401 YANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT  480 (609)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~  480 (609)
                       ..       ...+.....                +   .+ ...+...|.+++|+|||++||+|+.||+|++|++.++.
T Consensus       470 -~~-------~~~~~~~l~----------------~---~~-~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~  521 (902)
T 2oaj_A          470 -QD-------NASFEVNLS----------------R---TL-NKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQ  521 (902)
T ss_dssp             -TT-------TBCEEEEHH----------------H---HT-TCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECC
T ss_pred             -cC-------CceEEeech----------------h---hc-CCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCcc
Confidence             00       000000000                0   00 00233569999999999999999999999999997652


Q ss_pred             e-------------------------------------------eeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEE
Q 007283          481 L-------------------------------------------TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIV  517 (609)
Q Consensus       481 ~-------------------------------------------~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~i  517 (609)
                      .                                           ....++.+|.+.|++|+||||| +||+|+.|++|++
T Consensus       522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~l  600 (902)
T 2oaj_A          522 FYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLML  600 (902)
T ss_dssp             C---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEE
T ss_pred             ccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEE
Confidence            1                                           2245678899999999999999 9999999999999


Q ss_pred             EEccCCceEEe----eec-CCCCceEEEEEC-----CCC---cEEEEEeCCCeEEEEEc---CCCCCcceeEeccc----
Q 007283          518 WDRVSREVKLK----NML-YHTARINCLAWS-----PNN---SMVATGSLDTCVIIYEI---DKPASSRMTIKGAH----  577 (609)
Q Consensus       518 wd~~~~~~~~~----~~~-~h~~~i~~l~~s-----~d~---~~l~s~s~D~~v~vw~~---~~~~~~~~~~~~~h----  577 (609)
                      ||+.+.....+    .+. +|...|++++||     |||   ++|++|+.|++|++||+   ..+.  ....+.+|    
T Consensus       601 wd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~--~~~~~~~~~~~~  678 (902)
T 2oaj_A          601 IDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK--FDVQLMDITNVT  678 (902)
T ss_dssp             EETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC--EEEEEEEEEECC
T ss_pred             EECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc--EEEEecCceecC
Confidence            99877654321    233 799999999999     886   89999999999999998   3322  23333445    


Q ss_pred             -cCCeEEEE-Ec----------------------CCCeEEEEeCCCcEEEEEccC
Q 007283          578 -LGGVYGLA-FT----------------------DEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       578 -~~~v~~~~-~s----------------------~~~~l~s~s~D~~i~~W~~~~  608 (609)
                       .+.|.+++ |+                      .+..++.++ |..||+|++..
T Consensus       679 ~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ir~~~~~~  732 (902)
T 2oaj_A          679 SKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDDIRLITLGK  732 (902)
T ss_dssp             SSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSEEEEECTTC
T ss_pred             CCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccceEEEeCcc
Confidence             47788777 65                      223355455 78999999853

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=7.9e-52  Score=481.81  Aligned_cols=539  Identities=20%  Similarity=0.293  Sum_probs=414.6

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      ..+.+|.+.|++++|+|+|++||+|+.||+|+|||+.+++. ...+..|.+.|.+++|+|||++|++++.+.   .+++|
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~---~v~vw  684 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEK-LLDIKAHEDEVLCCAFSSDDSYIATCSADK---KVKIW  684 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEEE
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCE-EEEeccCCCCEEEEEEecCCCEEEEEeCCC---eEEEE
Confidence            34679999999999999999999999999999999988764 346788999999999999999999987543   57889


Q ss_pred             EcCCCCeeEEEecCCccEEEEEEeeCC-CeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283          131 MWDSGTNVGEFDGHSRRVLSCAFKPSR-PFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                      ++.+++.+..+.+|...|.+++|+|++ ...+++|+.|+.+++||..+++....+.+|...|++++|+|+++.|++++.|
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~d  764 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSAD  764 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESS
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECC
Confidence            999999999999999999999999963 3468999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEeCCCCccccccCcC----------CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCC
Q 007283          210 KKGIIYDGKTADKIGELSPE----------DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS  279 (609)
Q Consensus       210 ~~i~iwd~~~~~~~~~~~~~----------~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  279 (609)
                      +.+++||..+++....+...          ..+...|.+++|+|+|+++++++ ++.+.+||+..   +...........
T Consensus       765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~---~~~~~~~~~~~~  840 (1249)
T 3sfz_A          765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHT---SGLLAEIHTGHH  840 (1249)
T ss_dssp             SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTT---CCEEEEEECSSS
T ss_pred             CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecC---CCceeEEcCCCC
Confidence            99999998877655433210          12334788999999999999987 78999999874   334444432222


Q ss_pred             CCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccc
Q 007283          280 GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG  359 (609)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~  359 (609)
                      ..+.  .+.+..++.++++++.++.+++|+.... .....+.+|...|.++++++ ++..+++++.||+|++|+......
T Consensus       841 ~~v~--~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~~~h~~~v~~v~~sp-dg~~l~s~s~dg~v~vw~~~~~~~  916 (1249)
T 3sfz_A          841 STIQ--YCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADCRGHLSWVHGVMFSP-DGSSFLTASDDQTIRVWETKKVCK  916 (1249)
T ss_dssp             SCCC--EEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEHHHHHS
T ss_pred             CceE--EEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeecCCCccceEEEEECC-CCCEEEEEeCCCeEEEEEccccce
Confidence            2221  1222234668999999999999998753 33456789999999999975 557899999999999998643110


Q ss_pred             ce-------------------------------------eccccccceeEeee--eCCcEEEEeccceEEEEeccCCccc
Q 007283          360 GK-------------------------------------LQRKENSQIKCFAA--IEEEIVTSGFDNKIWRVSLQGDQCG  400 (609)
Q Consensus       360 ~~-------------------------------------~~~~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~  400 (609)
                      ..                                     ........+.++..  .+..+++++.++.+..|+.......
T Consensus       917 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~  996 (1249)
T 3sfz_A          917 NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVF  996 (1249)
T ss_dssp             CCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCE
T ss_pred             eeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCcee
Confidence            00                                     00001123444444  3556888899999999998765431


Q ss_pred             cccccccCCCCceeEeeccCCcEEEEEecccEEEee--CCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283          401 YANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR--GAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG  478 (609)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~  478 (609)
                       .....+......+.+..++..++..+.+..+.+|.  .........+...+.+++++|++ .+++++.||.|++||+.+
T Consensus       997 -~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~ 1074 (1249)
T 3sfz_A          997 -SSGVGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVIT 1074 (1249)
T ss_dssp             -EECCCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTT
T ss_pred             -eecccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCC
Confidence             11112233445555555544444444455566765  33444344466789999999966 478899999999999987


Q ss_pred             CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeE
Q 007283          479 DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCV  558 (609)
Q Consensus       479 ~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v  558 (609)
                      +..  ...+.+|.+.|.+++|+|++.++++++.|+++++||+.+... ...+.+|...|++++||||+++|++|+.||+|
T Consensus      1075 ~~~--~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~-~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i 1151 (1249)
T 3sfz_A         1075 GRI--ERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSP-LHELKGHNGCVRCSAFSLDGILLATGDDNGEI 1151 (1249)
T ss_dssp             TCC--CEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSC-SBCCCCCSSCEEEEEECSSSSEEEEEETTSCC
T ss_pred             Cce--eEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcce-eeeeccCCCcEEEEEECCCCCEEEEEeCCCEE
Confidence            765  456789999999999999999999999999999999877654 34567899999999999999999999999999


Q ss_pred             EEEEcCCCCCcce-------eEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEccC
Q 007283          559 IIYEIDKPASSRM-------TIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       559 ~vw~~~~~~~~~~-------~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      ++||+..+.....       ....+|.+.|++++|+ ++.+|++++  |.|++|++..
T Consensus      1152 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~ 1207 (1249)
T 3sfz_A         1152 RIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVAT 1207 (1249)
T ss_dssp             CEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSS
T ss_pred             EEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCC
Confidence            9999976431110       1125799999999999 778888875  8999999853

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-52  Score=460.91  Aligned_cols=493  Identities=13%  Similarity=0.118  Sum_probs=349.3

Q ss_pred             cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283           53 YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  132 (609)
                      ..+|.+.|++++|+|+|++||+|+.||+|+||+..+.+.. .. ..|...|.+++|+| |++|++++.+.   .+++|++
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~-~~-~~~~~~V~~l~fsp-g~~L~S~s~D~---~v~lWd~   86 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVV-IK-LEDRSAIKEMRFVK-GIYLVVINAKD---TVYVLSL   86 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEE-EE-CSSCCCEEEEEEET-TTEEEEEETTC---EEEEEET
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEE-EE-cCCCCCEEEEEEcC-CCEEEEEECcC---eEEEEEC
Confidence            3489999999999999999999999999999998765432 22 23677899999999 88888887644   5788888


Q ss_pred             CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee-----------eeccCcccceEEEEEcCC-C
Q 007283          133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-----------LSHRGHSNFVNCVRFSPD-G  200 (609)
Q Consensus       133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~-----------~~~~~h~~~v~~l~~s~d-g  200 (609)
                      +.++.+..+. |...|.+++|+|++.. +++|+.|+.|++||.+..+..           ..+.+|...|.+++|+|+ +
T Consensus        87 ~~~~~~~~~~-~~~~V~~v~~sp~g~~-l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~  164 (902)
T 2oaj_A           87 YSQKVLTTVF-VPGKITSIDTDASLDW-MLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDI  164 (902)
T ss_dssp             TTCSEEEEEE-CSSCEEEEECCTTCSE-EEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEE
T ss_pred             CCCcEEEEEc-CCCCEEEEEECCCCCE-EEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCC
Confidence            8888888886 6688999999999985 999999999999998877643           345789999999999996 4


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccCcC---------------CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccC
Q 007283          201 SKFISVSSDKKGIIYDGKTADKIGELSPE---------------DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISED  265 (609)
Q Consensus       201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---------------~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~  265 (609)
                      ..|++|+.|+.+ +||.++++.+..+...               .+|...|++++|+|+|++|++++.|++|++||++. 
T Consensus       165 ~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~-  242 (902)
T 2oaj_A          165 GTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS-  242 (902)
T ss_dssp             EEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT-
T ss_pred             CEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC-
Confidence            689999999999 9999988776554311               23567899999999999999999999999999874 


Q ss_pred             CCCceEEEeccC----CC-------C--CccceEEEEEEc----C---CeEEEEEcC-----CcEEEEeCCCC-------
Q 007283          266 NHGKLKKTLTPS----GS-------G--GVDDMLVGCLWQ----N---DFLVIVSLG-----GTISIFSANDL-------  313 (609)
Q Consensus       266 ~~~~~~~~~~~~----~~-------~--~~~~~~~~~~~~----~---~~~~~~~~~-----g~i~~~~~~~~-------  313 (609)
                        ++.+......    ..       +  .....+..+.|.    +   .++++++.+     ..+.+|++...       
T Consensus       243 --g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s  320 (902)
T 2oaj_A          243 --GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITS  320 (902)
T ss_dssp             --CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCC
T ss_pred             --CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccc
Confidence              3433321110    00       0  012234455562    2   245555554     26777763210       


Q ss_pred             ----------CCCceeee-CCCCCeEEEEEec---------CCCCEEEEEecCCcEEEEecCcccccee-------cccc
Q 007283          314 ----------EKSPLQLS-GHMKNVTALTVLN---------IDPKVILSSSYDGLIVKWIQGIGYGGKL-------QRKE  366 (609)
Q Consensus       314 ----------~~~~~~~~-~h~~~v~~~~~~~---------~~~~~~~t~s~dg~i~~W~~~~~~~~~~-------~~~~  366 (609)
                                ......+. +|...|..+.+..         .++..+++++.|++|++|+...+.....       ...+
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~  400 (902)
T 2oaj_A          321 YEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWL  400 (902)
T ss_dssp             HHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTB
T ss_pred             hhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCccccc
Confidence                      00112222 4566777777643         1344788889999999998754321100       0001


Q ss_pred             ccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe-c
Q 007283          367 NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI-N  445 (609)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  445 (609)
                      ...+.++.+..       ....+  |......         .                             ......+ .
T Consensus       401 ~~~v~~~~~s~-------~~~~~--w~~~~~~---------~-----------------------------~~~~~~l~G  433 (902)
T 2oaj_A          401 RPLATTSMAAS-------VPNKL--WLGALSA---------A-----------------------------QNKDYLLKG  433 (902)
T ss_dssp             TTBEEEEEEEE-------EEHHH--HHHHHHT---------T-----------------------------BCCCCSCCC
T ss_pred             CCCeeEEEEEE-------cCHHH--HHHHHhc---------c-----------------------------cCCCCcccC
Confidence            12222222110       00000  1000000         0                             0000000 0


Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEE----e-----cCCCceEEEEECCCCCEEEEEeCCCeEE
Q 007283          446 LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL----E-----KHRGAVSVIRYSPDVSMFASGDVNREAI  516 (609)
Q Consensus       446 ~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~----~-----~h~~~i~~v~~s~~~~~l~s~s~d~~v~  516 (609)
                      +...+..++++||++++|+|+.|++||+||+..+.+.....+    .     +|...|.+|+|+|||++||+|+.|++|+
T Consensus       434 ~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~  513 (902)
T 2oaj_A          434 GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVV  513 (902)
T ss_dssp             SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEE
Confidence            122356678999999999999999999999987643211111    1     7999999999999999999999999999


Q ss_pred             EEEccCCc--------------------------------------------eEEeeecCCCCceEEEEECCCCcEEEEE
Q 007283          517 VWDRVSRE--------------------------------------------VKLKNMLYHTARINCLAWSPNNSMVATG  552 (609)
Q Consensus       517 iwd~~~~~--------------------------------------------~~~~~~~~h~~~i~~l~~s~d~~~l~s~  552 (609)
                      +||+.+.+                                            ..+..+.+|.+.|++++||||| +||+|
T Consensus       514 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg  592 (902)
T 2oaj_A          514 LFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA  592 (902)
T ss_dssp             EEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE
T ss_pred             EEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE
Confidence            99987552                                            1234466799999999999999 99999


Q ss_pred             eCCCeEEEEEcCCCCCcce----eEe-ccccCCeEEEEEc-----CC----CeEEEEeCCCcEEEEEc
Q 007283          553 SLDTCVIIYEIDKPASSRM----TIK-GAHLGGVYGLAFT-----DE----HSVVSSGEDACVRVWRL  606 (609)
Q Consensus       553 s~D~~v~vw~~~~~~~~~~----~~~-~~h~~~v~~~~~s-----~~----~~l~s~s~D~~i~~W~~  606 (609)
                      +.|++|++||+..+. ...    ... .+|...|++++|+     ++    .+|++++.|++|++|++
T Consensus       593 s~D~tv~lwd~~~~~-~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~  659 (902)
T 2oaj_A          593 YAAGSLMLIDRRGPA-IIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI  659 (902)
T ss_dssp             ETTSEEEEEETTTTE-EEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred             eCCCcEEEEECCCCe-EEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence            999999999986532 111    112 2899999999999     65    58999999999999998

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=5.1e-50  Score=432.12  Aligned_cols=510  Identities=16%  Similarity=0.194  Sum_probs=399.1

Q ss_pred             cCcCc-eeEEeecC--CCCeEEEeC-CCEEEEEeCCCC--------ccccccccCCCCcEEEEECCCCCEEEEEeCC---
Q 007283           14 TERGR-GILISGHP--KSNSILYTN-GRSVIILDLSNP--------LQVSIYGEHAYPATVARFSPNGEWIASADVS---   78 (609)
Q Consensus        14 ~~~~~-~~~~~~~~--~~~~l~~~~-~~~~~i~~~~~~--------~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---   78 (609)
                      .|.+. ...+.++|  +|+.|++.. ++.+.||++.++        .....+.+|...|.+++|+|+|++|++++.+   
T Consensus        61 ~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~  140 (615)
T 1pgu_A           61 GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN  140 (615)
T ss_dssp             TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC
T ss_pred             cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCC
Confidence            35666 78999999  999998874 589999999744        5566678899999999999999999999887   


Q ss_pred             -CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC-EEEEEECCCCcceEEEEEcCCCCeeEEEecCCc---cEEEEEE
Q 007283           79 -GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL-RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR---RVLSCAF  153 (609)
Q Consensus        79 -~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~~~~  153 (609)
                       +.|++||.  ++ ....+..|...|.+++|+|+++ ++++++.+.   .+++|+....+.+..+.+|..   .|.+++|
T Consensus       141 ~~~v~~~d~--~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~---~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~  214 (615)
T 1pgu_A          141 FGVFISWDS--GN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDG---SVVFYQGPPFKFSASDRTHHKQGSFVRDVEF  214 (615)
T ss_dssp             SEEEEETTT--CC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTT---EEEEEETTTBEEEEEECSSSCTTCCEEEEEE
T ss_pred             ccEEEEEEC--CC-cceeeecCCccEEEEEECCCCCcEEEEEeCCC---cEEEEeCCCcceeeeecccCCCCceEEEEEE
Confidence             68999983  33 3456778999999999999998 666666433   577888888888889999999   9999999


Q ss_pred             eeC-CCeEEEEecCCCeEEEEeCCCCceeeec-c---CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCc
Q 007283          154 KPS-RPFRIATCGEDFLVNFYEGPPFKFKLSH-R---GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSP  228 (609)
Q Consensus       154 ~p~-~~~~i~t~~~d~~i~~~~~~~~~~~~~~-~---~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~  228 (609)
                      +|+ +. .+++++.|+.+++||...++....+ .   +|...|.+++|+ ++++|++++.|+.+++||..+++.+..+..
T Consensus       215 ~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          215 SPDSGE-FVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             CSTTCC-EEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             CCCCCC-EEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            999 76 5999999999999999988888887 6   899999999999 999999999999999999998887766542


Q ss_pred             C-CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEE
Q 007283          229 E-DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISI  307 (609)
Q Consensus       229 ~-~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~  307 (609)
                      . ..+...+.++.|. ++.++++++.|+.|++||+..   ++....+...     ...+..+.+ ++ +++++.+|.+++
T Consensus       293 ~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~---~~~~~~~~~~-----~~~v~~~~~-~~-l~~~~~dg~i~~  361 (615)
T 1pgu_A          293 DKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGH---DEVLKTISGH-----NKGITALTV-NP-LISGSYDGRIME  361 (615)
T ss_dssp             CTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTE---EEEEEEECCC-----SSCEEEEET-TT-TEEEETTSCEEE
T ss_pred             CCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCC---CcEEEEEeCC-----CCCEEEEEe-cC-cEEECCCCeEEE
Confidence            2 2235778899985 899999999999999999863   3444444321     223455556 66 999999999999


Q ss_pred             EeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee-CCcEEEEecc
Q 007283          308 FSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI-EEEIVTSGFD  386 (609)
Q Consensus       308 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d  386 (609)
                      |+..     ... .+|...|.++++.  .+..+++++.|+.+++|+.......       ..+..+... ++.++..+.+
T Consensus       362 w~~~-----~~~-~~~~~~v~~~~~~--~~~~l~~~~~d~~i~~~~~~~~~~~-------~~~~~~~~s~~~~~~~~~~~  426 (615)
T 1pgu_A          362 WSSS-----SMH-QDHSNLIVSLDNS--KAQEYSSISWDDTLKVNGITKHEFG-------SQPKVASANNDGFTAVLTND  426 (615)
T ss_dssp             TTTT-----EEE-CCCCSCEEEEECC--STTCCEEEETTTEEEETTEEEEECS-------SCEEEEEECSSSEEEEEETT
T ss_pred             EEch-----hhc-CcccCceEEEEEC--CCcEEEEEeCCCCEEEEEcccCccc-------CCceEEEEcCCCCEEEEeCC
Confidence            9876     233 7899999999983  3468999999999999976543211       123444442 3345555588


Q ss_pred             ceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEec--ccEEEeeCCeee---EEe-ccCCceeEEEEcCCCC
Q 007283          387 NKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTD--SGVVLLRGAEVV---STI-NLRFPVTASAIAPDGS  460 (609)
Q Consensus       387 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~-~~~~~~~~~~~sp~g~  460 (609)
                      +.+..|+......  ...+........+.+.   +..++....  ..+.+|+.....   ..+ .+..++.+++++|+|+
T Consensus       427 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~  501 (615)
T 1pgu_A          427 DDLLILQSFTGDI--IKSVRLNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSET  501 (615)
T ss_dssp             SEEEEEETTTCCE--EEEEECSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSS
T ss_pred             CceEEEeccCCce--eeecccCCCceEEEEc---CCEEEEeecCCCeEEEEECCCccccccccCCccCceEEEEECCCCC
Confidence            8888888654432  1112223333333333   455555554  456666533221   112 2457899999999999


Q ss_pred             EEEEEeCCCcEEEEEecCCeeeeeEEEec-CCCceEEEEECC----------CCCEEEEEeCCCeEEEEEccCCceEEee
Q 007283          461 EAIIGSQDGKLRVYSIRGDTLTEEAVLEK-HRGAVSVIRYSP----------DVSMFASGDVNREAIVWDRVSREVKLKN  529 (609)
Q Consensus       461 ~l~~gs~dg~i~iw~~~~~~~~~~~~~~~-h~~~i~~v~~s~----------~~~~l~s~s~d~~v~iwd~~~~~~~~~~  529 (609)
                      ++++|+.||.|++|++..+...  ..+.+ |...|++++|+|          ++.+|++++.|++|++||+.+....+..
T Consensus       502 ~l~~~~~dg~i~iw~~~~~~~~--~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~  579 (615)
T 1pgu_A          502 YIAAGDVMGKILLYDLQSREVK--TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA  579 (615)
T ss_dssp             EEEEEETTSCEEEEETTTTEEE--ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE
T ss_pred             EEEEcCCCCeEEEeeCCCCcce--eEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh
Confidence            9999999999999999877653  44566 999999999999          9999999999999999999886445566


Q ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          530 MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       530 ~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      +.+|...|++++|+||++ |++++.|++|++|+++.
T Consensus       580 ~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          580 LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL  614 (615)
T ss_dssp             TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred             hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence            788999999999999999 99999999999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.5e-44  Score=399.55  Aligned_cols=474  Identities=18%  Similarity=0.229  Sum_probs=350.7

Q ss_pred             cCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283           14 TERGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~   92 (609)
                      .|.+....++++|+|..|+++. ++.+.|||+.++.....+.+|.+.|++++|+|+|++||+++.||+|+|||+.+++..
T Consensus        11 ~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~   90 (814)
T 3mkq_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKV   90 (814)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEE
T ss_pred             cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEE
Confidence            4567788999999999998875 579999999999888889999999999999999999999999999999999887643


Q ss_pred             eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                       ..+..|.+.|.+++|+||+.+|++++.+.   .+++|+++.+ .....+.+|...|.+++|+|++...+++++.|+.+.
T Consensus        91 -~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~  166 (814)
T 3mkq_A           91 -VDFEAHPDYIRSIAVHPTKPYVLSGSDDL---TVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVK  166 (814)
T ss_dssp             -EEEECCSSCEEEEEECSSSSEEEEEETTS---EEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             -EEEecCCCCEEEEEEeCCCCEEEEEcCCC---EEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEE
Confidence             45778999999999999999999887543   5788888876 556788899999999999995445699999999999


Q ss_pred             EEeCCCCceeeeccC-cccceEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeE
Q 007283          172 FYEGPPFKFKLSHRG-HSNFVNCVRFSP--DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV  248 (609)
Q Consensus       172 ~~~~~~~~~~~~~~~-h~~~v~~l~~s~--dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  248 (609)
                      +|+....+....+.. |...+.+++|+|  ++..|++++.|+.+.+||..+++.+..+   .+|.+.|.+++|+|++++|
T Consensus       167 vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l  243 (814)
T 3mkq_A          167 VWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATL---EGHMSNVSFAVFHPTLPII  243 (814)
T ss_dssp             EEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEE---ECCSSCEEEEEECSSSSEE
T ss_pred             EEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEE---cCCCCCEEEEEEcCCCCEE
Confidence            999877766655554 448899999999  9999999999999999999988877665   3688999999999999999


Q ss_pred             EEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeE
Q 007283          249 LTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVT  328 (609)
Q Consensus       249 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~  328 (609)
                      ++++.||.|++||+..   ++....                                              +..|...+.
T Consensus       244 ~~~~~dg~v~vwd~~~---~~~~~~----------------------------------------------~~~~~~~v~  274 (814)
T 3mkq_A          244 ISGSEDGTLKIWNSST---YKVEKT----------------------------------------------LNVGLERSW  274 (814)
T ss_dssp             EEEETTSCEEEEETTT---CSEEEE----------------------------------------------ECCSSSSEE
T ss_pred             EEEeCCCeEEEEECCC---CcEEEE----------------------------------------------eecCCCcEE
Confidence            9999999999999863   222222                                              223555666


Q ss_pred             EEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccce---EEEEeccCCcccccccc
Q 007283          329 ALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNK---IWRVSLQGDQCGYANSI  405 (609)
Q Consensus       329 ~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---i~~~~~~~~~~~~~~~~  405 (609)
                      ++++++....++++++.|+.+.+|+......          ...+...+..+.+++.+..   +.........       
T Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-------  337 (814)
T 3mkq_A          275 CIATHPTGRKNYIASGFDNGFTVLSLGNDEP----------TLSLDPVGKLVWSGGKNAAASDIFTAVIRGNE-------  337 (814)
T ss_dssp             EEEECTTCGGGEEEEEETTEEEEEECSCCSC----------CEEECSSSEEEEECCTTSCTTCEEEEECCSCC-------
T ss_pred             EEEEccCCCceEEEEEeCCCEEEEEcCCCCc----------eeEECCCCCEEEECcccccceeeeeeeccccc-------
Confidence            7776654434434444566666665432210          0011111111111111110   0000000000       


Q ss_pred             ccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeE
Q 007283          406 DIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEA  485 (609)
Q Consensus       406 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~  485 (609)
                      .           ......           . .............+.+++++|+|+++++++ |+.+++|++.....    
T Consensus       338 ~-----------~~~~~~-----------~-~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~----  389 (814)
T 3mkq_A          338 E-----------VEQDEP-----------L-SLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN----  389 (814)
T ss_dssp             C-----------CCSSSC-----------B-CCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE----
T ss_pred             c-----------cccCcc-----------c-eeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc----
Confidence            0           000000           0 000001112335678999999999999998 89999999754322    


Q ss_pred             EEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCC---cEEEEEeCCCeEEEEE
Q 007283          486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN---SMVATGSLDTCVIIYE  562 (609)
Q Consensus       486 ~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~---~~l~s~s~D~~v~vw~  562 (609)
                         .+.+.|.+++|+|+++++++++.|+++++|+.         +..|...+.+++|+||+   ++|++++.|++|++||
T Consensus       390 ---~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~---------~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d  457 (814)
T 3mkq_A          390 ---KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN---------FKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFD  457 (814)
T ss_dssp             ---EEEEECSEEEECTTSSCEEEECTTCCEEEEET---------TEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEEC
T ss_pred             ---cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC---------CCCccceEEcCCcCccceecceEEEEecCCEEEEEE
Confidence               23567889999999999999999999999963         34578889999999998   6889999999999999


Q ss_pred             cCCCCCcceeEeccccCCeEEEEEc-CCCeEEEE------eCCCcEEEEE
Q 007283          563 IDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSS------GEDACVRVWR  605 (609)
Q Consensus       563 ~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~------s~D~~i~~W~  605 (609)
                      +..+.  ......+|..   .++|+ ++++|+++      +.|+.+.+|-
T Consensus       458 ~~~~~--~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          458 WDNGT--LVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             TTTCC--EEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             CCcCc--EEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence            97643  3344455554   89999 77889988      6676666664

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=4.4e-43  Score=390.74  Aligned_cols=435  Identities=19%  Similarity=0.272  Sum_probs=333.2

Q ss_pred             cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      ..+.+.+|.+.|++++|||+|++||+++.||+|+|||+.+++. ...+..|..+|.+++|+|||++|++++++.   .++
T Consensus         5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~   80 (814)
T 3mkq_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDF---RIR   80 (814)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEEEGGGTEEEEEETTS---EEE
T ss_pred             cceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCce-EEEEecCCCcEEEEEEeCCCCEEEEEeCCC---eEE
Confidence            3456889999999999999999999999999999999988764 346778999999999999999999988643   578


Q ss_pred             EEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-ceeeeccCcccceEEEEEcC-CCCEEEEE
Q 007283          129 AFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-KFKLSHRGHSNFVNCVRFSP-DGSKFISV  206 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~l~~s~-dg~~l~s~  206 (609)
                      +|+++.+..+..+.+|...|.+++|+|+++. +++++.|+.+++|+.... .....+.+|...|.+++|+| ++..|+++
T Consensus        81 vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~  159 (814)
T 3mkq_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (814)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred             EEECCCCcEEEEEecCCCCEEEEEEeCCCCE-EEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence            8999999999999999999999999999985 889999999999998765 66677889999999999999 88899999


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC--CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP--DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD  284 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  284 (609)
                      +.|+.+++||..++.....+.  ..|...|.+++|+|  ++.+|++++.|+.|++||+..   ++..             
T Consensus       160 ~~dg~v~vwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~-------------  221 (814)
T 3mkq_A          160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT---KSCV-------------  221 (814)
T ss_dssp             ETTSEEEEEETTCSSCSEEEE--CCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT---TEEE-------------
T ss_pred             eCCCeEEEEECCCCcceeEEe--cCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC---CcEE-------------
Confidence            999999999998877665553  24558899999999  999999999999999999852   1111             


Q ss_pred             eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc
Q 007283          285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR  364 (609)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~  364 (609)
                                                       ..+.+|...|.++++++ ++.++++++.||.|++|+...+.......
T Consensus       222 ---------------------------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~  267 (814)
T 3mkq_A          222 ---------------------------------ATLEGHMSNVSFAVFHP-TLPIIISGSEDGTLKIWNSSTYKVEKTLN  267 (814)
T ss_dssp             ---------------------------------EEEECCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             ---------------------------------EEEcCCCCCEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcEEEEee
Confidence                                             12346788888998875 45699999999999999876543222221


Q ss_pred             ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCc-EEEEEecccEEEeeCCeeeEE
Q 007283          365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE-LVLVSTDSGVVLLRGAEVVST  443 (609)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  443 (609)
                      .+...+.++....                                         .... +++.+.++++.++..      
T Consensus       268 ~~~~~v~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~------  300 (814)
T 3mkq_A          268 VGLERSWCIATHP-----------------------------------------TGRKNYIASGFDNGFTVLSL------  300 (814)
T ss_dssp             CSSSSEEEEEECT-----------------------------------------TCGGGEEEEEETTEEEEEEC------
T ss_pred             cCCCcEEEEEEcc-----------------------------------------CCCceEEEEEeCCCEEEEEc------
Confidence            2222333333211                                         1111 123333333333321      


Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCc---EEE------EEecCCee--eeeEEEecCCCceEEEEECCCCCEEEEEeCC
Q 007283          444 INLRFPVTASAIAPDGSEAIIGSQDGK---LRV------YSIRGDTL--TEEAVLEKHRGAVSVIRYSPDVSMFASGDVN  512 (609)
Q Consensus       444 ~~~~~~~~~~~~sp~g~~l~~gs~dg~---i~i------w~~~~~~~--~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d  512 (609)
                         ......++++|+|..+++++.+..   +..      |++..+..  .....+..|...+.+++|+|+|+++++++ |
T Consensus       301 ---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~  376 (814)
T 3mkq_A          301 ---GNDEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-D  376 (814)
T ss_dssp             ---SCCSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-T
T ss_pred             ---CCCCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-C
Confidence               112334567888888888876653   111      22221111  11234456777899999999999999998 8


Q ss_pred             CeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCC---
Q 007283          513 REAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDE---  589 (609)
Q Consensus       513 ~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~---  589 (609)
                      +.+++|++.....      .+.+.|++++|+||+++||+++.|++|++|+.-          .+|...|.+++|+++   
T Consensus       377 ~~~~i~~~~~~~~------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~----------~~~~~~v~~~~~s~dg~~  440 (814)
T 3mkq_A          377 GEYVIYTALAWRN------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF----------KEVTSWSVPMHSAIDRLF  440 (814)
T ss_dssp             TEEEEEETTTTEE------EEEEECSEEEECTTSSCEEEECTTCCEEEEETT----------EECTTCCCCCSSCCCEEE
T ss_pred             CEEEEEECccccc------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECC----------CCccceEEcCCcCcccee
Confidence            9999999754322      245678899999999999999999999999631          358888999999954   


Q ss_pred             -CeEEEEeCCCcEEEEEcc
Q 007283          590 -HSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       590 -~~l~s~s~D~~i~~W~~~  607 (609)
                       ..|++++.|+.|++|++.
T Consensus       441 ~~~l~~~~~d~~v~~~d~~  459 (814)
T 3mkq_A          441 SGALLGVKSDGFVYFFDWD  459 (814)
T ss_dssp             CSSSEEEEETTEEEEECTT
T ss_pred             cceEEEEecCCEEEEEECC
Confidence             489999999999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.2e-42  Score=354.15  Aligned_cols=309  Identities=21%  Similarity=0.348  Sum_probs=250.7

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      ...+.+|+++|++++|+|++++||+|+.|++|+|||+.+++..                                     
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~-------------------------------------  143 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-------------------------------------  143 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-------------------------------------
T ss_pred             eEeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------------------------------
Confidence            3457799999999999999999999999999999998875421                                     


Q ss_pred             EEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283          130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                               ..+.+|...|.+++|+|++. .+++|+.|+.|++||....+....+.+|...|.+++|+|++++|++|+.|
T Consensus       144 ---------~~l~~h~~~V~~v~~~~~~~-~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D  213 (410)
T 1vyh_C          144 ---------RTLKGHTDSVQDISFDHSGK-LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRD  213 (410)
T ss_dssp             ---------EEECCCSSCEEEEEECTTSS-EEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETT
T ss_pred             ---------EEEeccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCC
Confidence                     13456777788888888776 48899999999999999888888999999999999999999999999999


Q ss_pred             CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE
Q 007283          210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC  289 (609)
Q Consensus       210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      ++|++||..++..+..+   .+|...|.++.|+|++.+|++++.|++|++||+..   ++..                  
T Consensus       214 ~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~---~~~~------------------  269 (410)
T 1vyh_C          214 KTIKMWEVQTGYCVKTF---TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECK------------------  269 (410)
T ss_dssp             SEEEEEETTTCCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEE------------------
T ss_pred             CeEEEEECCCCcEEEEE---eCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCC---Ccee------------------
Confidence            99999999999887766   37999999999999999999999999999999862   1111                  


Q ss_pred             EEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccc
Q 007283          290 LWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQ  369 (609)
Q Consensus       290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~  369 (609)
                                                  ..+.+|...|.++++.+.....                     ...  ..  
T Consensus       270 ----------------------------~~~~~h~~~v~~~~~~~~~~~~---------------------~~~--~~--  296 (410)
T 1vyh_C          270 ----------------------------AELREHRHVVECISWAPESSYS---------------------SIS--EA--  296 (410)
T ss_dssp             ----------------------------EEECCCSSCEEEEEECCSCGGG---------------------GGG--GC--
T ss_pred             ----------------------------eEecCCCceEEEEEEcCccccc---------------------chh--hh--
Confidence                                        1234577778777775321100                     000  00  


Q ss_pred             eeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCc
Q 007283          370 IKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFP  449 (609)
Q Consensus       370 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (609)
                                                            .                            +            
T Consensus       297 --------------------------------------~----------------------------~------------  298 (410)
T 1vyh_C          297 --------------------------------------T----------------------------G------------  298 (410)
T ss_dssp             --------------------------------------C----------------------------S------------
T ss_pred             --------------------------------------c----------------------------c------------
Confidence                                                  0                            0            


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN  529 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~  529 (609)
                      .......++|.++++|+.|++|++||+..+..  ...+.+|.+.|.+++|+|++.++++|+.|++|++||+.+.+. +..
T Consensus       299 ~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~-~~~  375 (410)
T 1vyh_C          299 SETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MKT  375 (410)
T ss_dssp             CC-------CCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC-CEE
T ss_pred             ccccccCCCCCEEEEEeCCCeEEEEECCCCce--EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCce-EEE
Confidence            00001123578999999999999999987764  456789999999999999999999999999999999876653 445


Q ss_pred             ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          530 MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       530 ~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      +.+|...|++++|+|++.+|++|+.|++|++|++
T Consensus       376 ~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          376 LNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence            6789999999999999999999999999999985

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.3e-41  Score=334.17  Aligned_cols=291  Identities=21%  Similarity=0.335  Sum_probs=244.0

Q ss_pred             cccccCCCCcEEEEECCC----CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcce
Q 007283           51 SIYGEHAYPATVARFSPN----GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL  126 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~----g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~  126 (609)
                      ..+.+|.+.|++++|+|+    +++||||+.|++||||++.+.+..                                  
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~----------------------------------   71 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD----------------------------------   71 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE----------------------------------
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee----------------------------------
Confidence            346789999999999985    679999999999999998654311                                  


Q ss_pred             EEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEE
Q 007283          127 VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       127 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~  206 (609)
                                ....+.+|...|.+++|+|++. .+++++.|+.+++||..+++....+..|...+.+++|+|+|++|+++
T Consensus        72 ----------~~~~l~gh~~~v~~~~~~~~~~-~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g  140 (321)
T 3ow8_A           72 ----------LQWSLEGHQLGVVSVDISHTLP-IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATG  140 (321)
T ss_dssp             ----------EEEEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEE
T ss_pred             ----------eeeeeccCCCCEEEEEECCCCC-EEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEE
Confidence                      0123568888899999999887 49999999999999999998888888899999999999999999999


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML  286 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  286 (609)
                      +.|+.+++|+.++++....+.   .|...|.+++|+|++++|++++.|+.|++||+..   ++...              
T Consensus       141 ~~dg~v~i~~~~~~~~~~~~~---~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~---~~~~~--------------  200 (321)
T 3ow8_A          141 THVGKVNIFGVESGKKEYSLD---TRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT---GKLLH--------------  200 (321)
T ss_dssp             CTTSEEEEEETTTCSEEEEEE---CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEE--------------
T ss_pred             cCCCcEEEEEcCCCceeEEec---CCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC---CcEEE--------------
Confidence            999999999999888766553   5778899999999999999999999999999752   11100              


Q ss_pred             EEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283          287 VGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE  366 (609)
Q Consensus       287 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~  366 (609)
                                                      .+.+|.                                          
T Consensus       201 --------------------------------~~~~h~------------------------------------------  206 (321)
T 3ow8_A          201 --------------------------------TLEGHA------------------------------------------  206 (321)
T ss_dssp             --------------------------------EECCCS------------------------------------------
T ss_pred             --------------------------------EEcccC------------------------------------------
Confidence                                            011111                                          


Q ss_pred             ccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEecc
Q 007283          367 NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINL  446 (609)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (609)
                                                                                                      
T Consensus       207 --------------------------------------------------------------------------------  206 (321)
T 3ow8_A          207 --------------------------------------------------------------------------------  206 (321)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE
Q 007283          447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK  526 (609)
Q Consensus       447 ~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~  526 (609)
                       .++.+++++|+++++++|+.|++|++||++...+  ...+.+|.+.|.+++|+|++.+|++++.|++|++||+.+.+. 
T Consensus       207 -~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~-  282 (321)
T 3ow8_A          207 -MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL--AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-  282 (321)
T ss_dssp             -SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-
T ss_pred             -CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce--eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEE-
Confidence             1356678899999999999999999999986654  456789999999999999999999999999999999877654 


Q ss_pred             EeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          527 LKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       527 ~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      +..+..|...|++++|+|++++|++++.|++|++||++
T Consensus       283 ~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          283 VHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            44577899999999999999999999999999999974

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=5.3e-41  Score=342.00  Aligned_cols=289  Identities=23%  Similarity=0.378  Sum_probs=246.7

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      ...+.+|..+|++++|+|++. .+++|+.|+.|++||..+++....+.+|...|.+++|+|+|++|++|+.|++|++||.
T Consensus       101 ~~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~  179 (410)
T 1vyh_C          101 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDF  179 (410)
T ss_dssp             SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEET
T ss_pred             eEeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeC
Confidence            456889999999999999988 4999999999999999999988999999999999999999999999999999999999


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV  297 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (609)
                      .+++.+..+   .+|...|.+++|+|++.+|++++.|++|++||+..   +...                          
T Consensus       180 ~~~~~~~~~---~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~---~~~~--------------------------  227 (410)
T 1vyh_C          180 QGFECIRTM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT---GYCV--------------------------  227 (410)
T ss_dssp             TSSCEEECC---CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT---CCEE--------------------------
T ss_pred             CCCceeEEE---cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCC---CcEE--------------------------
Confidence            988877766   47999999999999999999999999999999852   1110                          


Q ss_pred             EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283          298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE  377 (609)
Q Consensus       298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~  377 (609)
                                          ..+.+|..                                                    
T Consensus       228 --------------------~~~~~h~~----------------------------------------------------  235 (410)
T 1vyh_C          228 --------------------KTFTGHRE----------------------------------------------------  235 (410)
T ss_dssp             --------------------EEEECCSS----------------------------------------------------
T ss_pred             --------------------EEEeCCCc----------------------------------------------------
Confidence                                01112211                                                    


Q ss_pred             CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283          378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP  457 (609)
Q Consensus       378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  457 (609)
                                                                                             .+.+++++|
T Consensus       236 -----------------------------------------------------------------------~v~~~~~~~  244 (410)
T 1vyh_C          236 -----------------------------------------------------------------------WVRMVRPNQ  244 (410)
T ss_dssp             -----------------------------------------------------------------------CEEEEEECT
T ss_pred             -----------------------------------------------------------------------cEEEEEECC
Confidence                                                                                   244556788


Q ss_pred             CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC--------------------CCEEEEEeCCCeEEE
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD--------------------VSMFASGDVNREAIV  517 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~--------------------~~~l~s~s~d~~v~i  517 (609)
                      +|.++++|+.|++|++|++.++..  ...+.+|...|.+++|+|+                    +.++++|+.|++|++
T Consensus       245 ~g~~l~s~s~D~~v~vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~i  322 (410)
T 1vyh_C          245 DGTLIASCSNDQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKM  322 (410)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEE
Confidence            889999999999999999876654  3567889999999999997                    678999999999999


Q ss_pred             EEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEe
Q 007283          518 WDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSG  596 (609)
Q Consensus       518 wd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s  596 (609)
                      ||+.++.. +..+.+|...|++++|+|++++|++|+.|++|++||+....  .+....+|...|++++|+ ++.+|+|+|
T Consensus       323 wd~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~l~sgs  399 (410)
T 1vyh_C          323 WDVSTGMC-LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR--CMKTLNAHEHFVTSLDFHKTAPYVVTGS  399 (410)
T ss_dssp             EETTTTEE-EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC--CCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             EECCCCce-EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--eEEEEcCCCCcEEEEEEcCCCCEEEEEe
Confidence            99887654 44577899999999999999999999999999999997543  345567899999999999 678999999


Q ss_pred             CCCcEEEEEcc
Q 007283          597 EDACVRVWRLT  607 (609)
Q Consensus       597 ~D~~i~~W~~~  607 (609)
                      .|++|++|++.
T Consensus       400 ~D~~i~vW~~r  410 (410)
T 1vyh_C          400 VDQTVKVWECR  410 (410)
T ss_dssp             TTSEEEEEC--
T ss_pred             CCCcEEEEeCC
Confidence            99999999863

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.9e-40  Score=329.22  Aligned_cols=290  Identities=18%  Similarity=0.294  Sum_probs=247.2

Q ss_pred             cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      ....+.+|.+.|++++|+|+|++||+|+.||+|+|||..+++.+ ..+..|...|.+++|+|+|++|++++.+.   .++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~s~~~d~---~v~  122 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKV-HAIPLRSSWVMTCAYAPSGNYVACGGLDN---ICS  122 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEE-EEEECSSSCEEEEEECTTSSEEEEEETTC---EEE
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcc-eEeecCCccEEEEEECCCCCEEEEEeCCC---eEE
Confidence            34568899999999999999999999999999999999887643 45778899999999999999999988644   577


Q ss_pred             EEEcCCCC----eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEE
Q 007283          129 AFMWDSGT----NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI  204 (609)
Q Consensus       129 ~~~~~~~~----~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  204 (609)
                      +|+.....    ....+.+|...|.++.|+|++.  +++++.|+.+++||..+++....+.+|...|.+++|+|++++|+
T Consensus       123 iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~  200 (340)
T 1got_B          123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEE
T ss_pred             EEECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEE
Confidence            77776542    3556889999999999999874  88999999999999999999889999999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283          205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD  284 (609)
Q Consensus       205 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  284 (609)
                      +|+.|+.+++||.+++..+..+   .+|...|++++|+|++++|++++.|++|++||++.   ++....+          
T Consensus       201 sg~~d~~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~~~----------  264 (340)
T 1got_B          201 SGACDASAKLWDVREGMCRQTF---TGHESDINAICFFPNGNAFATGSDDATCRLFDLRA---DQELMTY----------  264 (340)
T ss_dssp             EEETTSCEEEEETTTCSEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEE----------
T ss_pred             EEeCCCcEEEEECCCCeeEEEE---cCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCC---CcEEEEE----------
Confidence            9999999999999998877666   37999999999999999999999999999999752   1000000          


Q ss_pred             eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc
Q 007283          285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR  364 (609)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~  364 (609)
                                                           .|.          .                             
T Consensus       265 -------------------------------------~~~----------~-----------------------------  268 (340)
T 1got_B          265 -------------------------------------SHD----------N-----------------------------  268 (340)
T ss_dssp             -------------------------------------CCT----------T-----------------------------
T ss_pred             -------------------------------------ccC----------C-----------------------------
Confidence                                                 000          0                             


Q ss_pred             ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe
Q 007283          365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI  444 (609)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (609)
                                                                                                      
T Consensus       269 --------------------------------------------------------------------------------  268 (340)
T 1got_B          269 --------------------------------------------------------------------------------  268 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 007283          445 NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD  519 (609)
Q Consensus       445 ~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd  519 (609)
                       ....+.+++++|+|+++++|+.|+.|++||+.....  ...+.+|.+.|.+++|+|+|.+|++|+.|++|++||
T Consensus       269 -~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~--~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          269 -IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             -CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             -cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcE--eeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence             001256778999999999999999999999876654  456789999999999999999999999999999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=330.88  Aligned_cols=304  Identities=21%  Similarity=0.326  Sum_probs=239.2

Q ss_pred             ceeeeccCccc-ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE
Q 007283          179 KFKLSHRGHSN-FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA  257 (609)
Q Consensus       179 ~~~~~~~~h~~-~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i  257 (609)
                      ++...+.+|.. .|.+++|+|+|++||+|+.|++|+|||..++..........+|.+.|.+++|+|++++|++++.|+++
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            44556778987 89999999999999999999999999987765432222235899999999999999999999999999


Q ss_pred             EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283          258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP  337 (609)
Q Consensus       258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  337 (609)
                      ++|++...   ...                                            ....+.+|...|.+++|++ ++
T Consensus        86 ~iw~~~~~---~~~--------------------------------------------~~~~~~~h~~~v~~v~~sp-~~  117 (345)
T 3fm0_A           86 CIWKKNQD---DFE--------------------------------------------CVTTLEGHENEVKSVAWAP-SG  117 (345)
T ss_dssp             EEEEECCC----EE--------------------------------------------EEEEECCCSSCEEEEEECT-TS
T ss_pred             EEEEccCC---CeE--------------------------------------------EEEEccCCCCCceEEEEeC-CC
Confidence            99997521   000                                            0123567999999999975 56


Q ss_pred             CEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEee
Q 007283          338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVA  417 (609)
Q Consensus       338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (609)
                      +++++++.|++|++|+......          ..+                                             
T Consensus       118 ~~l~s~s~D~~v~iwd~~~~~~----------~~~---------------------------------------------  142 (345)
T 3fm0_A          118 NLLATCSRDKSVWVWEVDEEDE----------YEC---------------------------------------------  142 (345)
T ss_dssp             SEEEEEETTSCEEEEEECTTSC----------EEE---------------------------------------------
T ss_pred             CEEEEEECCCeEEEEECCCCCC----------eEE---------------------------------------------
Confidence            7999999999999997643210          000                                             


Q ss_pred             ccCCcEEEEEecccEEEeeCCeeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEE
Q 007283          418 LHYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV  496 (609)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~  496 (609)
                                             ...+ .+...+.+++++|+++++++|+.|++|++|+...+.......+.+|.+.|.+
T Consensus       143 -----------------------~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~  199 (345)
T 3fm0_A          143 -----------------------VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWS  199 (345)
T ss_dssp             -----------------------EEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEE
T ss_pred             -----------------------EEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEE
Confidence                                   0000 1224588899999999999999999999999987765556678999999999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCc--------------eEEeeec-CCCCceEEEEECCCCcEEEEEeCCCeEEEE
Q 007283          497 IRYSPDVSMFASGDVNREAIVWDRVSRE--------------VKLKNML-YHTARINCLAWSPNNSMVATGSLDTCVIIY  561 (609)
Q Consensus       497 v~~s~~~~~l~s~s~d~~v~iwd~~~~~--------------~~~~~~~-~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw  561 (609)
                      ++|+|+|++|++|+.|++|++||.....              ..+..+. .|...|++++|+|++.+|++++.|++|++|
T Consensus       200 l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw  279 (345)
T 3fm0_A          200 LAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVF  279 (345)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEE
T ss_pred             EEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEE
Confidence            9999999999999999999999963211              0111222 388999999999999999999999999999


Q ss_pred             EcCCCCCc---c----eeEeccccCCeEEEEEc-CC-CeEEEEeCCCcEEEEEccC
Q 007283          562 EIDKPASS---R----MTIKGAHLGGVYGLAFT-DE-HSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       562 ~~~~~~~~---~----~~~~~~h~~~v~~~~~s-~~-~~l~s~s~D~~i~~W~~~~  608 (609)
                      +.+.....   .    .....+|...|++++|+ ++ .+|+|+|.|++|++|++..
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~  335 (345)
T 3fm0_A          280 QEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQR  335 (345)
T ss_dssp             EECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC
T ss_pred             EeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecC
Confidence            98643211   1    12345899999999999 44 4899999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=6.5e-40  Score=325.42  Aligned_cols=293  Identities=19%  Similarity=0.306  Sum_probs=239.5

Q ss_pred             ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283          179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK  258 (609)
Q Consensus       179 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~  258 (609)
                      +....+.+|...|++++|+|++++|++|+.|+++++||..+++.+..+.   .|...|.+++|+|++++|++++.|+.++
T Consensus        46 ~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~s~~~d~~v~  122 (340)
T 1got_B           46 RTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIP---LRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE---CSSSCEEEEEECTTSSEEEEEETTCEEE
T ss_pred             hhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEee---cCCccEEEEEECCCCCEEEEEeCCCeEE
Confidence            4456788999999999999999999999999999999999888776653   6888999999999999999999999999


Q ss_pred             EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283          259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK  338 (609)
Q Consensus       259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  338 (609)
                      +|++...... .                                            .....+.+|...|.++.+.+.  .
T Consensus       123 iw~~~~~~~~-~--------------------------------------------~~~~~~~~h~~~v~~~~~~~~--~  155 (340)
T 1got_B          123 IYNLKTREGN-V--------------------------------------------RVSRELAGHTGYLSCCRFLDD--N  155 (340)
T ss_dssp             EEETTTCSBS-C--------------------------------------------EEEEEEECCSSCEEEEEEEET--T
T ss_pred             EEECccCCCc-c--------------------------------------------eeEEEecCCCccEEEEEECCC--C
Confidence            9998631100 0                                            001235678899999988754  4


Q ss_pred             EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283          339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL  418 (609)
Q Consensus       339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (609)
                      .+++++.|++|++|+...+..          +                   .                            
T Consensus       156 ~l~s~s~d~~i~~wd~~~~~~----------~-------------------~----------------------------  178 (340)
T 1got_B          156 QIVTSSGDTTCALWDIETGQQ----------T-------------------T----------------------------  178 (340)
T ss_dssp             EEEEEETTSCEEEEETTTTEE----------E-------------------E----------------------------
T ss_pred             cEEEEECCCcEEEEECCCCcE----------E-------------------E----------------------------
Confidence            699999999999997643210          0                   0                            


Q ss_pred             cCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEE
Q 007283          419 HYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIR  498 (609)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~  498 (609)
                                             ....+..++.+++++|+++++++|+.|++|++||++.+..  ...+.+|...|.+++
T Consensus       179 -----------------------~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~--~~~~~~h~~~v~~v~  233 (340)
T 1got_B          179 -----------------------TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC--RQTFTGHESDINAIC  233 (340)
T ss_dssp             -----------------------EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE--EEEECCCSSCEEEEE
T ss_pred             -----------------------EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCCcCCEEEEE
Confidence                                   0001224588899999999999999999999999987654  456789999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEee-ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccc
Q 007283          499 YSPDVSMFASGDVNREAIVWDRVSREVKLKN-MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH  577 (609)
Q Consensus       499 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h  577 (609)
                      |+|++.++++|+.|+++++||+...+..... ...+...|++++|+|++++|++|+.|+.|++||+...  .....+.+|
T Consensus       234 ~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~--~~~~~~~~h  311 (340)
T 1got_B          234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGH  311 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECC
T ss_pred             EcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC--cEeeEeecC
Confidence            9999999999999999999998776543221 1123457999999999999999999999999998753  334556789


Q ss_pred             cCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          578 LGGVYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       578 ~~~v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                      .+.|++++|+ ++.+|+|+|.|++|++|+
T Consensus       312 ~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999999999 778999999999999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=1.5e-40  Score=326.61  Aligned_cols=289  Identities=18%  Similarity=0.287  Sum_probs=242.1

Q ss_pred             EEEecCCccEEEEEEeeCC---CeEEEEecCCCeEEEEeCCCCc--eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283          139 GEFDGHSRRVLSCAFKPSR---PFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI  213 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~---~~~i~t~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~  213 (609)
                      ..+.+|.+.|.+++|+|++   ...+++|+.|+++++|+....+  ....+.+|...|.+++|+|++..+++++.|++|+
T Consensus        26 ~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~  105 (321)
T 3ow8_A           26 KQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIR  105 (321)
T ss_dssp             EETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEE
T ss_pred             eecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEE
Confidence            3456899999999999853   2369999999999999976554  3456889999999999999999999999999999


Q ss_pred             EEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcC
Q 007283          214 IYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN  293 (609)
Q Consensus       214 iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (609)
                      +||..+++.+..+.   .|...+.+++|+|++++|++++.|+.+++|++...   +...                     
T Consensus       106 lWd~~~~~~~~~~~---~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~---~~~~---------------------  158 (321)
T 3ow8_A          106 LWDLENGKQIKSID---AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG---KKEY---------------------  158 (321)
T ss_dssp             EEETTTTEEEEEEE---CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC---SEEE---------------------
T ss_pred             EEECCCCCEEEEEe---CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC---ceeE---------------------
Confidence            99999988776663   57788999999999999999999999999997521   0000                     


Q ss_pred             CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEe
Q 007283          294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCF  373 (609)
Q Consensus       294 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~  373 (609)
                                               .+..|                                                  
T Consensus       159 -------------------------~~~~~--------------------------------------------------  163 (321)
T 3ow8_A          159 -------------------------SLDTR--------------------------------------------------  163 (321)
T ss_dssp             -------------------------EEECS--------------------------------------------------
T ss_pred             -------------------------EecCC--------------------------------------------------
Confidence                                     00000                                                  


Q ss_pred             eeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEE
Q 007283          374 AAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTAS  453 (609)
Q Consensus       374 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (609)
                                                                                               ...+.++
T Consensus       164 -------------------------------------------------------------------------~~~v~~~  170 (321)
T 3ow8_A          164 -------------------------------------------------------------------------GKFILSI  170 (321)
T ss_dssp             -------------------------------------------------------------------------SSCEEEE
T ss_pred             -------------------------------------------------------------------------CceEEEE
Confidence                                                                                     0125667


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCC
Q 007283          454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYH  533 (609)
Q Consensus       454 ~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h  533 (609)
                      +++|+|+++|+|+.||.|++||++++..  ...+.+|..+|.+++|+|++++|++|+.|++|++||+...+. ...+.+|
T Consensus       171 ~~spdg~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~h  247 (321)
T 3ow8_A          171 AYSPDGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANL-AGTLSGH  247 (321)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCE-EEEECCC
T ss_pred             EECCCCCEEEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcce-eEEEcCC
Confidence            8899999999999999999999987765  456789999999999999999999999999999999877654 3457789


Q ss_pred             CCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          534 TARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       534 ~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ...|++++|+|++++|++|+.|++|++||+...  .......+|.+.|++++|+ ++++|+|+|.|++|++|++.
T Consensus       248 ~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~--~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR--TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTT--EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC--EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence            999999999999999999999999999999764  3345556899999999999 77899999999999999974

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=3e-40  Score=328.45  Aligned_cols=316  Identities=22%  Similarity=0.325  Sum_probs=237.9

Q ss_pred             ccccccCCC-CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           50 VSIYGEHAY-PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        50 ~~~~~~h~~-~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      +..+.+|.+ .|.+++|+|+|++||+|+.|++|+|||..++......                                 
T Consensus         8 ~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~---------------------------------   54 (345)
T 3fm0_A            8 LGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKS---------------------------------   54 (345)
T ss_dssp             EEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEE---------------------------------
T ss_pred             eeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeee---------------------------------
Confidence            345778987 8999999999999999999999999998765321100                                 


Q ss_pred             EEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC--ceeeeccCcccceEEEEEcCCCCEEEEE
Q 007283          129 AFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF--KFKLSHRGHSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~  206 (609)
                                ....+|...|.+++|+|++.+ |++|+.|+.+++|+....  +....+.+|...|.+++|+|+|++|++|
T Consensus        55 ----------~~~~~h~~~v~~~~~sp~g~~-l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~  123 (345)
T 3fm0_A           55 ----------VLSEGHQRTVRKVAWSPCGNY-LASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATC  123 (345)
T ss_dssp             ----------EECSSCSSCEEEEEECTTSSE-EEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             ----------eeccccCCcEEEEEECCCCCE-EEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEE
Confidence                      012467888888888888774 889999999999987654  4566788999999999999999999999


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDML  286 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  286 (609)
                      +.|+++++||..++.....+....+|...|.+++|+|++++|++++.|++|++||....   ...               
T Consensus       124 s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~---~~~---------------  185 (345)
T 3fm0_A          124 SRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEED---DWV---------------  185 (345)
T ss_dssp             ETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETT---EEE---------------
T ss_pred             ECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCC---CEE---------------
Confidence            99999999998876543323233579999999999999999999999999999997521   100               


Q ss_pred             EEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283          287 VGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE  366 (609)
Q Consensus       287 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~  366 (609)
                                                   ....+.+|...|.+++|++ +++++++++.|++|++|+.....       .
T Consensus       186 -----------------------------~~~~~~~h~~~v~~l~~sp-~g~~l~s~s~D~~v~iW~~~~~~-------~  228 (345)
T 3fm0_A          186 -----------------------------CCATLEGHESTVWSLAFDP-SGQRLASCSDDRTVRIWRQYLPG-------N  228 (345)
T ss_dssp             -----------------------------EEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEEECTT-------C
T ss_pred             -----------------------------EEEEecCCCCceEEEEECC-CCCEEEEEeCCCeEEEeccccCC-------C
Confidence                                         0123457888999999875 45789999999999999532100       0


Q ss_pred             ccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEecc
Q 007283          367 NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINL  446 (609)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (609)
                      ..                                                                              
T Consensus       229 ~~------------------------------------------------------------------------------  230 (345)
T 3fm0_A          229 EQ------------------------------------------------------------------------------  230 (345)
T ss_dssp             TT------------------------------------------------------------------------------
T ss_pred             Cc------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEe-cCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283          447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE-KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV  525 (609)
Q Consensus       447 ~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~-~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~  525 (609)
                        .+.+   .         ..+..   |.       ....+. .|...|.+++|+|++..+++++.|+.+++|+......
T Consensus       231 --~~~~---~---------~~~~~---~~-------~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~  286 (345)
T 3fm0_A          231 --GVAC---S---------GSDPS---WK-------CICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSD  286 (345)
T ss_dssp             --CCCC---C------------CE---EE-------EEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSC
T ss_pred             --ccee---e---------ccCCc---cc-------eeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCC
Confidence              0000   0         00000   10       012233 3888999999999999999999999999999754321


Q ss_pred             --------EEeeecCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEcCCC
Q 007283          526 --------KLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       526 --------~~~~~~~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~~  566 (609)
                              ......+|...|++++|+|++ .+||+|+.||+|++|++...
T Consensus       287 ~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~  336 (345)
T 3fm0_A          287 PQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP  336 (345)
T ss_dssp             TTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred             cceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence                    112235799999999999998 59999999999999999754

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=8.9e-41  Score=333.50  Aligned_cols=306  Identities=16%  Similarity=0.191  Sum_probs=222.0

Q ss_pred             CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC------CCcEEEEcCCCCceeeEEEeecccceeEEEEC
Q 007283           36 GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV------SGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWS  109 (609)
Q Consensus        36 ~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~------d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~s  109 (609)
                      ......|++..    .....|+..|++++|||||++||+|+.      |++|++|+..++....                
T Consensus        25 ~~~~~~w~~p~----~~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~----------------   84 (357)
T 4g56_B           25 SSKGSAWGRPV----TAPACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNE----------------   84 (357)
T ss_dssp             -------------------CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CG----------------
T ss_pred             CccccccCCCC----CCcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcce----------------
Confidence            36677887743    234579999999999999999999997      5567777655432100                


Q ss_pred             CCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee----eecc
Q 007283          110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK----LSHR  185 (609)
Q Consensus       110 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~----~~~~  185 (609)
                                                .......+|...|.+++|+|++.  +++++.|+.|++||..+++..    ....
T Consensus        85 --------------------------~~~~~~~~~~~~V~~~~~s~d~~--~l~~s~dg~v~lWd~~~~~~~~~~~~~~~  136 (357)
T 4g56_B           85 --------------------------SLCTAGVQTEAGVTDVAWVSEKG--ILVASDSGAVELWEILEKESLLVNKFAKY  136 (357)
T ss_dssp             --------------------------GGCSEEEECSSCEEEEEEETTTE--EEEEETTSCEEEC--------CCCCEEEC
T ss_pred             --------------------------eEecccCCCCCCEEEEEEcCCCC--EEEEECCCEEEEeeccccceeEEEeeccC
Confidence                                      00112345777788888888764  556778888999987665433    2345


Q ss_pred             CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeeccc
Q 007283          186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISE  264 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~  264 (609)
                      +|...|++++|+|+|++|++|+.|+.|++||..+++.+..+   .+|.+.|++++|+|++. ++++++.|++|++||++.
T Consensus       137 ~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~---~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~  213 (357)
T 4g56_B          137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSY---NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRK  213 (357)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTS
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCC
Confidence            89999999999999999999999999999999999887766   37999999999999985 789999999999999752


Q ss_pred             CCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe
Q 007283          265 DNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS  344 (609)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s  344 (609)
                      .   +....                                            ..+..|                     
T Consensus       214 ~---~~~~~--------------------------------------------~~~~~~---------------------  225 (357)
T 4g56_B          214 P---KPATR--------------------------------------------IDFCAS---------------------  225 (357)
T ss_dssp             S---SCBCB--------------------------------------------CCCTTC---------------------
T ss_pred             C---ceeee--------------------------------------------eeeccc---------------------
Confidence            1   00000                                            000000                     


Q ss_pred             cCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEE
Q 007283          345 YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELV  424 (609)
Q Consensus       345 ~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (609)
                                                                                                      
T Consensus       226 --------------------------------------------------------------------------------  225 (357)
T 4g56_B          226 --------------------------------------------------------------------------------  225 (357)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEecccEEEeeCCeeeEEeccCCceeEEEEcCC-CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC
Q 007283          425 LVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD-GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV  503 (609)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~-g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~  503 (609)
                                            ...+.+++++|+ +.++|+|+.|+.|++||++.+..  ...+.+|...|++++|+|++
T Consensus       226 ----------------------~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~l~~sp~~  281 (357)
T 4g56_B          226 ----------------------DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDS--AQTSAVHSQNITGLAYSYHS  281 (357)
T ss_dssp             ----------------------CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGG--CEEECCCSSCEEEEEECSSS
T ss_pred             ----------------------cccccchhhhhcccceEEEeecccceeEEECCCCcE--eEEEeccceeEEEEEEcCCC
Confidence                                  012556778886 46788999999999999876654  45678999999999999997


Q ss_pred             -CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEcCCC
Q 007283          504 -SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       504 -~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~-d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                       .+||+|+.|++|++||+.+++..  ...+|...|++++||| |+++|+|++.|++|++|+++.+
T Consensus       282 ~~~lasgs~D~~i~iwd~~~~~~~--~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          282 SPFLASISEDCTVAVLDADFSEVF--RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             SCCEEEEETTSCEEEECTTSCEEE--EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEe--EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence             58999999999999998876543  3458999999999998 8999999999999999999754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-40  Score=329.25  Aligned_cols=308  Identities=19%  Similarity=0.202  Sum_probs=229.0

Q ss_pred             EEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEE
Q 007283           40 IILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACG  119 (609)
Q Consensus        40 ~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~  119 (609)
                      ..|++....    ...|...|.+++|+|||++|++++ |+++|+||...     ..+.....       .|.        
T Consensus        17 r~w~~~~~~----~~~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~-----~~~~~~~~-------~~~--------   71 (344)
T 4gqb_B           17 REWNLPPNA----PACMERQLEAARYRSDGALLLGAS-SLSGRCWAGSL-----WLFKDPCA-------APN--------   71 (344)
T ss_dssp             ------CCS----CSSCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE-----EEESSGGG-------TTC--------
T ss_pred             cccCCCCCC----cccccCCEEEEEECCCCCEEEEEe-CCceEEeecee-----eeeccccc-------cCC--------
Confidence            456654322    234677799999999999999887 88999997421     00100000       000        


Q ss_pred             CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee----eccCcccceEEEE
Q 007283          120 DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL----SHRGHSNFVNCVR  195 (609)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~----~~~~h~~~v~~l~  195 (609)
                                     .........|...|.+++|+|++  .+++|+.|+.|++||..+++...    ...+|...|++++
T Consensus        72 ---------------~~~~~~~~~~~~~v~~~~~s~d~--~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~  134 (344)
T 4gqb_B           72 ---------------EGFCSAGVQTEAGVADLTWVGER--GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVS  134 (344)
T ss_dssp             ---------------GGGCSEEEEESSCEEEEEEETTT--EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEE
T ss_pred             ---------------cceeeeeeccCCCEEEEEEeCCC--eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEE
Confidence                           00011122455679999999986  48899999999999987765433    3458999999999


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCceEEEe
Q 007283          196 FSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       196 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~  274 (609)
                      |+|+|++|++|+.|++|++||..+++.+..+   .+|.+.|++++|+|++. +|++++.|++|++||++.   ++....+
T Consensus       135 ~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~---~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~---~~~~~~~  208 (344)
T 4gqb_B          135 VLSSGTQAVSGSKDICIKVWDLAQQVVLSSY---RAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRC---PKPASQI  208 (344)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTS---SSCEEEC
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEE---cCcCCceEEEEecCCCCCceeeeccccccccccccc---cceeeee
Confidence            9999999999999999999999999888776   48999999999999985 689999999999999862   1111000


Q ss_pred             ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283          275 TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~  354 (609)
                      .                                            ...|                               
T Consensus       209 ~--------------------------------------------~~~~-------------------------------  213 (344)
T 4gqb_B          209 G--------------------------------------------CSAP-------------------------------  213 (344)
T ss_dssp             C-------------------------------------------------------------------------------
T ss_pred             e--------------------------------------------ccee-------------------------------
Confidence            0                                            0000                               


Q ss_pred             CccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEE
Q 007283          355 GIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVL  434 (609)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (609)
                                                                                                      
T Consensus       214 --------------------------------------------------------------------------------  213 (344)
T 4gqb_B          214 --------------------------------------------------------------------------------  213 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC-CEEEEEeCC
Q 007283          435 LRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV-SMFASGDVN  512 (609)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~-~~l~s~s~d  512 (609)
                                  ...+.+++++| +++++|+|+.||+|++||++++..  ...+.+|.+.|++++|+|++ .+||+|+.|
T Consensus       214 ------------~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D  279 (344)
T 4gqb_B          214 ------------GYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSED  279 (344)
T ss_dssp             ------------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETT
T ss_pred             ------------eccceeeeecCCCCcceEEeccCCcEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCC
Confidence                        01244566777 456788999999999999987654  45788999999999999998 589999999


Q ss_pred             CeEEEEEccCCceEEeeecCCCCceEEEEECCCCc-EEEEEeCCCeEEEEEcCCC
Q 007283          513 REAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS-MVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       513 ~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~s~D~~v~vw~~~~~  566 (609)
                      ++|++||+.+++.  ..+.+|...|++++|||+++ +|+|++.|++|++|+++.+
T Consensus       280 ~~i~vwd~~~~~~--~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          280 CSLAVLDSSLSEL--FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             SCEEEECTTCCEE--EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred             CeEEEEECCCCcE--EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence            9999999877654  34678999999999999986 6789999999999999753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-39  Score=325.06  Aligned_cols=291  Identities=20%  Similarity=0.350  Sum_probs=244.8

Q ss_pred             cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      ....+.+|.+.|++++|+|+|++||||+.|++|+|||..+.+. ...+..+...|.+++|+|+|.+|++.+.+.   .++
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~-~~~~~~~~~~v~~~~~sp~g~~lasg~~d~---~i~  131 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNK-EHAVTMPCTWVMACAYAPSGCAIACGGLDN---KCS  131 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE-EEEEECSSSCCCEEEECTTSSEEEEESTTS---EEE
T ss_pred             EEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCc-ceEEecCCCCEEEEEECCCCCEEEEeeCCC---CEE
Confidence            3456889999999999999999999999999999999987654 345677888999999999999999887543   466


Q ss_pred             EEEcCCC------CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcC--CC
Q 007283          129 AFMWDSG------TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP--DG  200 (609)
Q Consensus       129 ~~~~~~~------~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~--dg  200 (609)
                      +|.+...      .....+.+|...|.+++|+|++.. +++++.|+.+++||.++++....+.+|...|.+++|+|  +|
T Consensus       132 v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g  210 (354)
T 2pbi_B          132 VYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQ-ILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETG  210 (354)
T ss_dssp             EEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSC
T ss_pred             EEEEeccccccccccceeeeccCCcEEEEEEeCCCCE-EEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCC
Confidence            7776532      235577899999999999999874 99999999999999999999999999999999999988  47


Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCC
Q 007283          201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG  280 (609)
Q Consensus       201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~  280 (609)
                      +.|++|+.|+.+++||.++++.+..+   .+|...|++++|+|++.+|++++.|++|++||++..   +....       
T Consensus       211 ~~l~sgs~Dg~v~~wd~~~~~~~~~~---~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~-------  277 (354)
T 2pbi_B          211 NTFVSGGCDKKAMVWDMRSGQCVQAF---ETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAI-------  277 (354)
T ss_dssp             CEEEEEETTSCEEEEETTTCCEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEE-------
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEE-------
Confidence            89999999999999999999877665   479999999999999999999999999999998521   00000       


Q ss_pred             CccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccc
Q 007283          281 GVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGG  360 (609)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~  360 (609)
                                                                          .....                       
T Consensus       278 ----------------------------------------------------~~~~~-----------------------  282 (354)
T 2pbi_B          278 ----------------------------------------------------YSKES-----------------------  282 (354)
T ss_dssp             ----------------------------------------------------ECCTT-----------------------
T ss_pred             ----------------------------------------------------EcCCC-----------------------
Confidence                                                                00000                       


Q ss_pred             eeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCee
Q 007283          361 KLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEV  440 (609)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (609)
                                                                                                      
T Consensus       283 --------------------------------------------------------------------------------  282 (354)
T 2pbi_B          283 --------------------------------------------------------------------------------  282 (354)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 007283          441 VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD  519 (609)
Q Consensus       441 ~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd  519 (609)
                           ....+.+++++|+|+++++|+.|++|++||+..+..  ...+.+|.+.|.+++|+|||.+|++|+.|++|++|+
T Consensus       283 -----~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~--~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          283 -----IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR--VSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             -----CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE--EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             -----cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce--EEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence                 001256678899999999999999999999976654  356789999999999999999999999999999995

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=1.4e-39  Score=317.70  Aligned_cols=292  Identities=21%  Similarity=0.284  Sum_probs=242.0

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      ..++.+|.+.|.+++|+|+++. +++++.|+.+++||.++.+....+.+|..+|.+++|+|++++|++|+.|++|++||.
T Consensus         6 ~~~~~~h~~~V~~~~fsp~~~~-l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            6 KKTFSNRSDRVKGIDFHPTEPW-VLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             EEEEEEECSCEEEEEECSSSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             EEeecCCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            4568899999999999999985 999999999999999999888889999999999999999999999999999999999


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV  297 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (609)
                      .+++.+..+   .+|.+.|.+++|+|++++|++++.|++|++||+...  ...                           
T Consensus        85 ~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~--~~~---------------------------  132 (304)
T 2ynn_A           85 NTGEKVVDF---EAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENN--WAL---------------------------  132 (304)
T ss_dssp             TTCCEEEEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGT--TEE---------------------------
T ss_pred             CCCcEEEEE---eCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCC--cch---------------------------
Confidence            999887766   379999999999999999999999999999998631  000                           


Q ss_pred             EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283          298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE  377 (609)
Q Consensus       298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~  377 (609)
                                         ...+.+|...|.+++|++.++..+++|+.|++|++|+.........               
T Consensus       133 -------------------~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~---------------  178 (304)
T 2ynn_A          133 -------------------EQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFT---------------  178 (304)
T ss_dssp             -------------------EEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEE---------------
T ss_pred             -------------------hhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccce---------------
Confidence                               0234578899999999876678999999999999998643210000               


Q ss_pred             CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283          378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP  457 (609)
Q Consensus       378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  457 (609)
                         +                                                             ...+...+..++++|
T Consensus       179 ---~-------------------------------------------------------------~~~~~~~v~~~~~~~  194 (304)
T 2ynn_A          179 ---L-------------------------------------------------------------TTGQERGVNYVDYYP  194 (304)
T ss_dssp             ---E-------------------------------------------------------------ECCCTTCEEEEEECC
T ss_pred             ---e-------------------------------------------------------------ccCCcCcEEEEEEEE
Confidence               0                                                             000012345556655


Q ss_pred             --CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCC
Q 007283          458 --DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTA  535 (609)
Q Consensus       458 --~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~  535 (609)
                        ++.++++|+.|++|++||++.+.+  ...+.+|...|.+++|+|++.+|++|+.|++|++||..+.+. .+.+..|..
T Consensus       195 ~~~~~~l~s~s~D~~i~iWd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~-~~~~~~~~~  271 (304)
T 2ynn_A          195 LPDKPYMITASDDLTIKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV-EKTLNVGLE  271 (304)
T ss_dssp             STTCCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE-EEEECCSSS
T ss_pred             cCCCCEEEEEcCCCeEEEEeCCCCcc--ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCce-eeeccCCCc
Confidence              788999999999999999987764  467889999999999999999999999999999999877654 445678999


Q ss_pred             ceEEEEECCCCc--EEEEEeCCCeEEEEEcC
Q 007283          536 RINCLAWSPNNS--MVATGSLDTCVIIYEID  564 (609)
Q Consensus       536 ~i~~l~~s~d~~--~l~s~s~D~~v~vw~~~  564 (609)
                      .+++++|+|+++  ++|+|+.|| +.+|++.
T Consensus       272 ~~~~~~~~~~~~~~~~asg~~~g-~~~~~~~  301 (304)
T 2ynn_A          272 RSWCIATHPTGRKNYIASGFDNG-FTVLSLG  301 (304)
T ss_dssp             SEEEEEECTTCGGGCEEEEETTE-EEEEECC
T ss_pred             cEEEEEECCCCCceEEEEecCCc-eEEEEec
Confidence            999999999885  578877666 6777764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2e-40  Score=334.37  Aligned_cols=314  Identities=16%  Similarity=0.254  Sum_probs=244.9

Q ss_pred             EEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283          172 FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       172 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                      .|+.....+...+.+|...|++++|+|++++|++|+.|++++|||..+++....+.   +|...|.+++|+|++++|+++
T Consensus        50 ~~~~~~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~---~h~~~v~~~~~s~~g~~las~  126 (380)
T 3iz6_a           50 SFNPTDLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIK---LHCPWVMECAFAPNGQSVACG  126 (380)
T ss_dssp             CCCCCCCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEE---CCCTTCCCCEECTTSSEEEEC
T ss_pred             ccccceeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEe---cCCCCEEEEEECCCCCEEEEe
Confidence            34555566677889999999999999999999999999999999999988776663   688999999999999999999


Q ss_pred             eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEE
Q 007283          252 SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALT  331 (609)
Q Consensus       252 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~  331 (609)
                      +.|+.+++|++......        .                                  ........+.+|...|.++.
T Consensus       127 ~~d~~v~iw~~~~~~~~--------~----------------------------------~~~~~~~~~~gh~~~v~~~~  164 (380)
T 3iz6_a          127 GLDSACSIFNLSSQADR--------D----------------------------------GNMPVSRVLTGHKGYASSCQ  164 (380)
T ss_dssp             CSSSCCEEEECCCCSSC--------C----------------------------------CSSTTCCBCCCCSSCCCCCB
T ss_pred             eCCCcEEEEECCCCccc--------c----------------------------------CCccceeeccCCCcceEEEE
Confidence            99999999998631100        0                                  00111234678999998888


Q ss_pred             EecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCC
Q 007283          332 VLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP  411 (609)
Q Consensus       332 ~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~  411 (609)
                      +.+..+..+++|+.|++|++|+...+....                             .+....               
T Consensus       165 ~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~-----------------------------~~~~~~---------------  200 (380)
T 3iz6_a          165 YVPDQETRLITGSGDQTCVLWDVTTGQRIS-----------------------------IFGSEF---------------  200 (380)
T ss_dssp             CCSSSSSCEEEECTTSCEEEECTTTCCEEE-----------------------------EECCCS---------------
T ss_pred             EecCCCCEEEEECCCCcEEEEEcCCCcEEE-----------------------------Eeeccc---------------
Confidence            876666789999999999999875431100                             000000               


Q ss_pred             ceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC
Q 007283          412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH  490 (609)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h  490 (609)
                                                     ...+...+.+++++| ++.++++|+.|++|++||++... .....+.+|
T Consensus       201 -------------------------------~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~-~~~~~~~~h  248 (380)
T 3iz6_a          201 -------------------------------PSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS-RAVRTYHGH  248 (380)
T ss_dssp             -------------------------------SSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-CCCEEECCC
T ss_pred             -------------------------------CCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-cceEEECCc
Confidence                                           001123467778866 88999999999999999986332 124567899


Q ss_pred             CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCC-------CCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          491 RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYH-------TARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       491 ~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h-------~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      .+.|.+++|+|++.+|++|+.|+++++||+.++.... .+..+       ...|++++|+|+|++|++|+.||.|++||+
T Consensus       249 ~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~  327 (380)
T 3iz6_a          249 EGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQ-VYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDT  327 (380)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEE-EECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEET
T ss_pred             CCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEE-EecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEEC
Confidence            9999999999999999999999999999998765432 22222       235899999999999999999999999998


Q ss_pred             CCCCCccee---EeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEccC
Q 007283          564 DKPASSRMT---IKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       564 ~~~~~~~~~---~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      .... ....   ...+|.+.|++++|+ ++.+|+|+|.|++|++|++..
T Consensus       328 ~~~~-~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          328 LLAE-MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             TTCC-EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CCCc-eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            6533 1111   125899999999999 788999999999999999863

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.3e-39  Score=317.20  Aligned_cols=295  Identities=22%  Similarity=0.337  Sum_probs=235.8

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-----CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-----FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-----~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      ...+.+|.+.|.+++|+|+++..+++|+.|+++++|+...     ......+.+|...|.+++|+|+|++|++|+.|++|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            3568899999999999998766799999999999998642     23355688999999999999999999999999999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      ++||..+++.+..+   .+|.+.|.+++|+|++.+|++++.|++|++||++.    +..                     
T Consensus        90 ~~wd~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~----~~~---------------------  141 (319)
T 3frx_A           90 RLWDVATGETYQRF---VGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----QCL---------------------  141 (319)
T ss_dssp             EEEETTTTEEEEEE---ECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----CEE---------------------
T ss_pred             EEEECCCCCeeEEE---ccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----CeE---------------------
Confidence            99999999877666   37999999999999999999999999999999751    111                     


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283          293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC  372 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~  372 (609)
                                               ..+.+|...|.++.+.+..                                    
T Consensus       142 -------------------------~~~~~h~~~v~~~~~~~~~------------------------------------  160 (319)
T 3frx_A          142 -------------------------ATLLGHNDWVSQVRVVPNE------------------------------------  160 (319)
T ss_dssp             -------------------------EEECCCSSCEEEEEECCC-------------------------------------
T ss_pred             -------------------------EEEeccCCcEEEEEEccCC------------------------------------
Confidence                                     1223465555555443210                                    


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeE
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTA  452 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (609)
                                                                                                      
T Consensus       161 --------------------------------------------------------------------------------  160 (319)
T 3frx_A          161 --------------------------------------------------------------------------------  160 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC
Q 007283          453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY  532 (609)
Q Consensus       453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~  532 (609)
                       ...+++..+++|+.|+.|++||++....  ...+.+|...|.+++|+|++++|++|+.|++|++||+.+.+... .+. 
T Consensus       161 -~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~-~~~-  235 (319)
T 3frx_A          161 -KADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMY-TLS-  235 (319)
T ss_dssp             ------CCEEEEEETTSCEEEEETTTTEE--EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEE-EEE-
T ss_pred             -CCCCCccEEEEEeCCCEEEEEECCcchh--heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE-Eec-
Confidence             0123456789999999999999976654  35678999999999999999999999999999999988765432 333 


Q ss_pred             CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCccee-------EeccccCCeEEEEEc-CCCeEEEEeCCCcEEEE
Q 007283          533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMT-------IKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW  604 (609)
Q Consensus       533 h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~-------~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W  604 (609)
                      +...|.+++|+|++++|++++.+ .+++|+++... ....       ...+|...|.+++|+ |+++|++++.|+.|++|
T Consensus       236 ~~~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vW  313 (319)
T 3frx_A          236 AQDEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQY-LVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW  313 (319)
T ss_dssp             CCSCEEEEEECSSSSEEEEEETT-EEEEEEETTEE-EEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCe-eeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEE
Confidence            45789999999999999988765 59999987532 1111       123467789999999 78999999999999999


Q ss_pred             EccC
Q 007283          605 RLTP  608 (609)
Q Consensus       605 ~~~~  608 (609)
                      ++.+
T Consensus       314 d~~t  317 (319)
T 3frx_A          314 QVMT  317 (319)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            9864

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=5.3e-39  Score=320.39  Aligned_cols=295  Identities=20%  Similarity=0.286  Sum_probs=239.6

Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      ....+.+|...|.+++|+|++. +|++|+.|+.+++||..+.+....+..|...|.+++|+|+|..|++++.|+.+.+|+
T Consensus        56 ~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           56 TRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            4567899999999999999987 599999999999999988888888888999999999999999999999999999998


Q ss_pred             CCCCccc---cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcC
Q 007283          217 GKTADKI---GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN  293 (609)
Q Consensus       217 ~~~~~~~---~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (609)
                      .......   .......+|.+.|.+++|+|++..|++++.|++|++||+..   ++..                      
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~---~~~~----------------------  189 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVES---GQLL----------------------  189 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTT---CCEE----------------------
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCC---CeEE----------------------
Confidence            7643211   11111236999999999999999999999999999999862   2211                      


Q ss_pred             CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC-CCCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283          294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI-DPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC  372 (609)
Q Consensus       294 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~  372 (609)
                                              ..+.+|...|.++++.+. ++.++++|+.||+|++|+...+..          +  
T Consensus       190 ------------------------~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~----------~--  233 (354)
T 2pbi_B          190 ------------------------QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQC----------V--  233 (354)
T ss_dssp             ------------------------EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCE----------E--
T ss_pred             ------------------------EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcE----------E--
Confidence                                    234568888888888753 457999999999999998643210          0  


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeE
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTA  452 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (609)
                                       ..                                                   ...+..++.+
T Consensus       234 -----------------~~---------------------------------------------------~~~h~~~v~~  245 (354)
T 2pbi_B          234 -----------------QA---------------------------------------------------FETHESDVNS  245 (354)
T ss_dssp             -----------------EE---------------------------------------------------ECCCSSCEEE
T ss_pred             -----------------EE---------------------------------------------------ecCCCCCeEE
Confidence                             00                                                   0012245889


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC
Q 007283          453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY  532 (609)
Q Consensus       453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~  532 (609)
                      ++++|++.++|+|+.|++|++||++.+..........+...+.+++|+|++.++++|+.|++|++||+.+++. +..+.+
T Consensus       246 v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~-~~~l~~  324 (354)
T 2pbi_B          246 VRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSR-VSILFG  324 (354)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSE-EEEECC
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCce-EEEEEC
Confidence            9999999999999999999999998765432111123345789999999999999999999999999877654 445778


Q ss_pred             CCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283          533 HTARINCLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       533 h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                      |...|++++|+||+++|++|+.|++|++|+
T Consensus       325 h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          325 HENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             CSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            999999999999999999999999999995

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-39  Score=329.14  Aligned_cols=343  Identities=17%  Similarity=0.191  Sum_probs=267.8

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcC----CCCce-----eeEEEee---------
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGE-WIASADVSGTVRIWGA----HNDHV-----LKKEFRV---------   98 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~----~~~~~-----~~~~~~~---------   98 (609)
                      .+.+|++...........|.+.|++++|+|+|+ +||+++.|++|+||++    .+++.     ....+..         
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSG  105 (425)
T ss_dssp             --------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC----
T ss_pred             ccccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccccccc
Confidence            345677766555444455679999999999999 9999999999999999    76652     2223333         


Q ss_pred             -cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283           99 -LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP  177 (609)
Q Consensus        99 -~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~  177 (609)
                       |...|.+++|+||+++|++++.+.   .+++|+ ..+..+..+.+|...|.+++|+|++.. +++++.|+.+++|+...
T Consensus       106 ~~~~~v~~~~~s~~~~~l~~~~~dg---~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~iwd~~~  180 (425)
T 1r5m_A          106 KTTNQVTCLAWSHDGNSIVTGVENG---ELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTH-IISMDVENVTILWNVIS  180 (425)
T ss_dssp             --CBCEEEEEECTTSSEEEEEETTS---CEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSE-EEEEETTCCEEEEETTT
T ss_pred             CCCCceEEEEEcCCCCEEEEEeCCC---eEEEEe-CCCCeeeeccCCCccEEEEEECCCCCE-EEEEecCCeEEEEECCC
Confidence             566999999999999999887543   366666 456778889999999999999999885 88999999999999998


Q ss_pred             CceeeeccCcccc---------------eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEEC
Q 007283          178 FKFKLSHRGHSNF---------------VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS  242 (609)
Q Consensus       178 ~~~~~~~~~h~~~---------------v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s  242 (609)
                      ++....+..|...               +.++.|+|++ .+++++.|+.+++||..+++.+..+   .+|...|.+++|+
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~i~~~d~~~~~~~~~~---~~~~~~i~~~~~~  256 (425)
T 1r5m_A          181 GTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDD-KFVIPGPKGAIFVYQITEKTPTGKL---IGHHGPISVLEFN  256 (425)
T ss_dssp             TEEEEEECCC---------------CCCBSCCEEEETT-EEEEECGGGCEEEEETTCSSCSEEE---CCCSSCEEEEEEE
T ss_pred             CcEEEEeeccccCccceeeccccCCcceeeEEEEcCCC-EEEEEcCCCeEEEEEcCCCceeeee---ccCCCceEEEEEC
Confidence            8888887777766               9999999986 5889999999999999988776655   3688999999999


Q ss_pred             CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeC
Q 007283          243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSG  322 (609)
Q Consensus       243 pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~  322 (609)
                      |++++|++++.|+.|++||+...   +..                                              ..+.+
T Consensus       257 ~~~~~l~~~~~d~~i~i~d~~~~---~~~----------------------------------------------~~~~~  287 (425)
T 1r5m_A          257 DTNKLLLSASDDGTLRIWHGGNG---NSQ----------------------------------------------NCFYG  287 (425)
T ss_dssp             TTTTEEEEEETTSCEEEECSSSB---SCS----------------------------------------------EEECC
T ss_pred             CCCCEEEEEcCCCEEEEEECCCC---ccc----------------------------------------------eEecC
Confidence            99999999999999999997521   000                                              00111


Q ss_pred             CCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccc
Q 007283          323 HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYA  402 (609)
Q Consensus       323 h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~  402 (609)
                      |.                                                                              
T Consensus       288 ~~------------------------------------------------------------------------------  289 (425)
T 1r5m_A          288 HS------------------------------------------------------------------------------  289 (425)
T ss_dssp             CS------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            11                                                                              


Q ss_pred             cccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeee
Q 007283          403 NSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLT  482 (609)
Q Consensus       403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~  482 (609)
                                                                   .++.+++++|++ .+++++.|+.|++|++..+.. 
T Consensus       290 ---------------------------------------------~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-  322 (425)
T 1r5m_A          290 ---------------------------------------------QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTL-  322 (425)
T ss_dssp             ---------------------------------------------SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEE-
T ss_pred             ---------------------------------------------ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcE-
Confidence                                                         124556777888 888888999999999876654 


Q ss_pred             eeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc-------------------eEEeeecCCCC--ceEEEE
Q 007283          483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE-------------------VKLKNMLYHTA--RINCLA  541 (609)
Q Consensus       483 ~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~-------------------~~~~~~~~h~~--~i~~l~  541 (609)
                       ...+..|...|.+++|+|++.++++++.|+.+++||+.+.+                   ..+..+..|..  .|++++
T Consensus       323 -~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  401 (425)
T 1r5m_A          323 -LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLS  401 (425)
T ss_dssp             -EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEE
T ss_pred             -eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEE
Confidence             35567899999999999999999999999999999987655                   03445677866  999999


Q ss_pred             ECCCCcEEEEEeCCCeEEEEEcC
Q 007283          542 WSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       542 ~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      |+|++++|++++.||.|++|+++
T Consensus       402 ~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          402 WNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ECTTSSEEEEEESSSCCEEEECC
T ss_pred             ccCCCceEEEEecCceEEEEeec
Confidence            99999999999999999999975

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.5e-39  Score=318.68  Aligned_cols=307  Identities=21%  Similarity=0.281  Sum_probs=217.9

Q ss_pred             ccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283           48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV  127 (609)
Q Consensus        48 ~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  127 (609)
                      +.+..+.+|++.|.+++|+|+  +||+|+.|++|+|||+.++....                                  
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~----------------------------------   48 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTL----------------------------------   48 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEE----------------------------------
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEE----------------------------------
Confidence            344568899999999999998  99999999999999987642100                                  


Q ss_pred             EEEEcCCCCeeEEE-e-cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-------CceeeeccCcccceEEEEEcC
Q 007283          128 RAFMWDSGTNVGEF-D-GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-------FKFKLSHRGHSNFVNCVRFSP  198 (609)
Q Consensus       128 ~~~~~~~~~~~~~~-~-~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-------~~~~~~~~~h~~~v~~l~~s~  198 (609)
                                ...+ . +|...|.+++|+|++. .+++|+.|+.+++|+...       .+....+.+|...|.+++|+|
T Consensus        49 ----------~~~~~~~~h~~~v~~v~~sp~~~-~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp  117 (330)
T 2hes_X           49 ----------IDVLDETAHKKAIRSVAWRPHTS-LLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSN  117 (330)
T ss_dssp             ----------EEEECTTCCCSCEEEEEECTTSS-EEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECT
T ss_pred             ----------EEEEecCCccCCEEEEEECCCCC-EEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECC
Confidence                      0011 1 3777888888888876 488899999999998642       345566889999999999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC-ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccC
Q 007283          199 DGSKFISVSSDKKGIIYDGKTA-DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPS  277 (609)
Q Consensus       199 dg~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  277 (609)
                      +|++|++|+.|++|++||.... .....+....+|...|.+++|+|++.+|++++.|++|++||....   ..       
T Consensus       118 ~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~---~~-------  187 (330)
T 2hes_X          118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDD---DW-------  187 (330)
T ss_dssp             TSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETT---EE-------
T ss_pred             CCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---Ce-------
Confidence            9999999999999999998432 211112223479999999999999999999999999999996421   00       


Q ss_pred             CCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCC-CCEEEEEecCCcEEEEecCc
Q 007283          278 GSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNID-PKVILSSSYDGLIVKWIQGI  356 (609)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~t~s~dg~i~~W~~~~  356 (609)
                                                           .....+.+|...|.+++|++.. ...+++++.|++|++|+...
T Consensus       188 -------------------------------------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~  230 (330)
T 2hes_X          188 -------------------------------------ECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG  230 (330)
T ss_dssp             -------------------------------------EEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred             -------------------------------------eEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence                                                 0012345677778777776432 34677777777777774321


Q ss_pred             cccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEee
Q 007283          357 GYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR  436 (609)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (609)
                      ..                                                                              
T Consensus       231 ~~------------------------------------------------------------------------------  232 (330)
T 2hes_X          231 DD------------------------------------------------------------------------------  232 (330)
T ss_dssp             EC------------------------------------------------------------------------------
T ss_pred             CC------------------------------------------------------------------------------
Confidence            00                                                                              


Q ss_pred             CCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEe-cCCCceEEEEECCCCCEEEEEeCCCeE
Q 007283          437 GAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE-KHRGAVSVIRYSPDVSMFASGDVNREA  515 (609)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~-~h~~~i~~v~~s~~~~~l~s~s~d~~v  515 (609)
                                          +.+.           ..|       .....+. .|...|.+++|++++ ++++++.|++|
T Consensus       233 --------------------~~~~-----------~~~-------~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v  273 (330)
T 2hes_X          233 --------------------EDDQ-----------QEW-------VCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVL  273 (330)
T ss_dssp             --------------------TTSC-----------EEE-------EEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCE
T ss_pred             --------------------cccc-----------cee-------EEeeecccccccceEEEEEcCCC-EEEEEeCCCEE
Confidence                                0000           000       0112233 388999999999765 89999999999


Q ss_pred             EEEEccCCce--EEeeecCCCC-ceEEEEECC--CCcEEEEEeCCCeEEEEEcCC
Q 007283          516 IVWDRVSREV--KLKNMLYHTA-RINCLAWSP--NNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       516 ~iwd~~~~~~--~~~~~~~h~~-~i~~l~~s~--d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      ++||..+++.  .......|.. .|++++|+|  ++++||+|+.||+|++|++..
T Consensus       274 ~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          274 AVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            9999876642  2223356877 899999999  789999999999999999753

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-38  Score=313.97  Aligned_cols=297  Identities=21%  Similarity=0.273  Sum_probs=224.9

Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC--ceeeec-cC-cccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF--KFKLSH-RG-HSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~--~~~~~~-~~-h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      .+..+.+|...|.+++|+|+   ++++|+.|+.+++|+....  +....+ .+ |...|.+++|+|++++|++|+.|++|
T Consensus         6 ~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v   82 (330)
T 2hes_X            6 LIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV   82 (330)
T ss_dssp             EEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence            45678899999999999987   6999999999999998764  334444 34 99999999999999999999999999


Q ss_pred             EEEeCCCC-------ccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccce
Q 007283          213 IIYDGKTA-------DKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDM  285 (609)
Q Consensus       213 ~iwd~~~~-------~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  285 (609)
                      +|||....       +.+..   ..+|.+.|.+++|+|++++|++++.|++|++||+...  +....             
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~---~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~--~~~~~-------------  144 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAI---IEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDES--GEEYE-------------  144 (330)
T ss_dssp             EEEEC-------CCCEEEEE---EC----CEEEEEECTTSCEEEEEETTSCEEEEECCTT--CCCCE-------------
T ss_pred             EEEEcccCcCccccceeEEE---EcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCC--CCCeE-------------
Confidence            99998532       22222   2489999999999999999999999999999997421  00000             


Q ss_pred             EEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccc
Q 007283          286 LVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK  365 (609)
Q Consensus       286 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~  365 (609)
                                                    ....+.+|.                                         
T Consensus       145 ------------------------------~~~~~~~h~-----------------------------------------  153 (330)
T 2hes_X          145 ------------------------------CISVLQEHS-----------------------------------------  153 (330)
T ss_dssp             ------------------------------EEEEECCCS-----------------------------------------
T ss_pred             ------------------------------EEEEeccCC-----------------------------------------
Confidence                                          000011111                                         


Q ss_pred             cccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEec
Q 007283          366 ENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN  445 (609)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  445 (609)
                                                                                                      
T Consensus       154 --------------------------------------------------------------------------------  153 (330)
T 2hes_X          154 --------------------------------------------------------------------------------  153 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC--CCEEEEEeCCCeEEEEEccCC
Q 007283          446 LRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD--VSMFASGDVNREAIVWDRVSR  523 (609)
Q Consensus       446 ~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~--~~~l~s~s~d~~v~iwd~~~~  523 (609)
                        ..+.+++++|++.+|++|+.|++|++|+...+.......+.+|.+.|.+++|+|+  +.++++|+.|++|++||+...
T Consensus       154 --~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          154 --QDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGD  231 (330)
T ss_dssp             --SCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEE
T ss_pred             --CceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCC
Confidence              2366778889999999999999999999876644445678899999999999999  779999999999999997643


Q ss_pred             c-------eEEeeec-CCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCC-cceeEeccccC-CeEEEEEcC---CC
Q 007283          524 E-------VKLKNML-YHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPAS-SRMTIKGAHLG-GVYGLAFTD---EH  590 (609)
Q Consensus       524 ~-------~~~~~~~-~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~-~~~~~~~~h~~-~v~~~~~s~---~~  590 (609)
                      .       .....+. .|...|++++|++++ +|++++.|++|++|+...... .......+|.. .|++++|++   ++
T Consensus       232 ~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~  310 (330)
T 2hes_X          232 DEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKT  310 (330)
T ss_dssp             CTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----C
T ss_pred             CccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCce
Confidence            1       1122233 389999999999765 789999999999999865321 11223357887 899999984   57


Q ss_pred             eEEEEeCCCcEEEEEccC
Q 007283          591 SVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       591 ~l~s~s~D~~i~~W~~~~  608 (609)
                      +|+|+|.|++|++|++..
T Consensus       311 ~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          311 ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEETTSEEEEEEC--
T ss_pred             EEEEecCCCcEEEEEecc
Confidence            899999999999999864

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2e-38  Score=309.52  Aligned_cols=208  Identities=23%  Similarity=0.431  Sum_probs=182.7

Q ss_pred             cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      ....|.+|.+.|++++|+|+|++||+++.||+|+|||+.+++. ...+..|..+|.+++|+|++++|++++++.   .++
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~---~i~   80 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE-VRSIQVTETPVRAGKFIARKNWIIVGSDDF---RIR   80 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSCEEEEEEEGGGTEEEEEETTS---EEE
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce-eEEeeccCCcEEEEEEeCCCCEEEEECCCC---EEE
Confidence            3456889999999999999999999999999999999988754 456788899999999999999999988654   588


Q ss_pred             EEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-ceeeeccCcccceEEEEEcC-CCCEEEEE
Q 007283          129 AFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-KFKLSHRGHSNFVNCVRFSP-DGSKFISV  206 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-~~~~~~~~h~~~v~~l~~s~-dg~~l~s~  206 (609)
                      +|+.+++..+..+.+|...|.+++|+|++.. +++|+.|+.+++||.+.. .....+.+|...|.+++|+| ++..|++|
T Consensus        81 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~-l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg  159 (304)
T 2ynn_A           81 VFNYNTGEKVVDFEAHPDYIRSIAVHPTKPY-VLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG  159 (304)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred             EEECCCCcEEEEEeCCCCcEEEEEEcCCCCE-EEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence            8998899999999999999999999999985 999999999999998765 45567889999999999999 57899999


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC--CCCeEEEEeCCCcEEEeecc
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP--DGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp--d~~~l~s~s~d~~i~iwd~~  263 (609)
                      +.|++|++||.........+.  .+|...|..+.|+|  ++.+|++++.|++|++||++
T Consensus       160 s~D~~v~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~  216 (304)
T 2ynn_A          160 CLDRTVKVWSLGQSTPNFTLT--TGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ  216 (304)
T ss_dssp             ETTSEEEEEETTCSSCSEEEE--CCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETT
T ss_pred             eCCCeEEEEECCCCCccceec--cCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCC
Confidence            999999999998776554442  35777899999987  77899999999999999975

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=3.1e-39  Score=325.64  Aligned_cols=303  Identities=22%  Similarity=0.373  Sum_probs=242.4

Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      +...+.+|.+.|++++|+|++.. |++|+.|+++++||..+.+....+.+|...|.+++|+|+|++|++|+.|+.+++|+
T Consensus        58 ~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~  136 (380)
T 3iz6_a           58 CCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFN  136 (380)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEE
T ss_pred             EeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEE
Confidence            44678999999999999999985 99999999999999999988888999999999999999999999999999999999


Q ss_pred             CCCCcc----ccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE
Q 007283          217 GKTADK----IGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW  291 (609)
Q Consensus       217 ~~~~~~----~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      ..+...    ........+|.+.|.++.|+|++ ..|++++.|++|++||+..   ++....+..               
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~---~~~~~~~~~---------------  198 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTT---GQRISIFGS---------------  198 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTT---CCEEEEECC---------------
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCC---CcEEEEeec---------------
Confidence            865321    11112235899999999999974 5799999999999999863   222221110               


Q ss_pred             cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccccee
Q 007283          292 QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK  371 (609)
Q Consensus       292 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~  371 (609)
                                                ....+|...|.++.+.+.++.++++|+.|++|++|+......         .+.
T Consensus       199 --------------------------~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~---------~~~  243 (380)
T 3iz6_a          199 --------------------------EFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSR---------AVR  243 (380)
T ss_dssp             --------------------------CSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCC---------CCE
T ss_pred             --------------------------ccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCc---------ceE
Confidence                                      012468889999998876778999999999999998642100         000


Q ss_pred             EeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCcee
Q 007283          372 CFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVT  451 (609)
Q Consensus       372 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (609)
                                                                                            ....+..++.
T Consensus       244 ----------------------------------------------------------------------~~~~h~~~v~  253 (380)
T 3iz6_a          244 ----------------------------------------------------------------------TYHGHEGDIN  253 (380)
T ss_dssp             ----------------------------------------------------------------------EECCCSSCCC
T ss_pred             ----------------------------------------------------------------------EECCcCCCeE
Confidence                                                                                  0001234688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC-------CCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc
Q 007283          452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH-------RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE  524 (609)
Q Consensus       452 ~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h-------~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~  524 (609)
                      +++++|+++++++|+.||+|++||++++...  ..+..+       ...|.+++|+|+|.++++|+.|+.|++||....+
T Consensus       254 ~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~  331 (380)
T 3iz6_a          254 SVKFFPDGQRFGTGSDDGTCRLFDMRTGHQL--QVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAE  331 (380)
T ss_dssp             EEEECTTSSEEEEECSSSCEEEEETTTTEEE--EEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCC
T ss_pred             EEEEecCCCeEEEEcCCCeEEEEECCCCcEE--EEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCc
Confidence            9999999999999999999999999877643  233332       2358999999999999999999999999987765


Q ss_pred             eEEee---ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          525 VKLKN---MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       525 ~~~~~---~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      .....   ..+|...|++++|+||+++|++|+.|++|++|++..
T Consensus       332 ~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          332 MVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             EEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             eEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            43321   157999999999999999999999999999999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3e-38  Score=313.06  Aligned_cols=321  Identities=16%  Similarity=0.217  Sum_probs=264.7

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG  135 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  135 (609)
                      |.+.|.+++|+|||+++|.+..++.+.+|........ .....|.+.|.+++|+|++++|++++++    .+++|+.+.+
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~dg----~i~iw~~~~~   82 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQ-INTLNHGEVVCAVTISNPTRHVYTGGKG----CVKVWDISHP   82 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEE-EEEECCSSCCCEEEECSSSSEEEEECBS----EEEEEETTST
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCcccc-ceeccCCCceEEEEEecCCcEEEEcCCC----eEEEEECCCC
Confidence            4567999999999999998887777777766543322 2344688999999999999999987732    4778887765


Q ss_pred             C---eeEEEe--cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc--eeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283          136 T---NVGEFD--GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       136 ~---~~~~~~--~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                      .   ....+.  +|...|.+++|+|++.. +++++.|+.+++|+....+  ....+.+|...|.+++|+|+++.|++++.
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  161 (337)
T 1gxr_A           83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS  161 (337)
T ss_dssp             TCCSCSEEEECSCTTSBEEEEEECTTSSE-EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET
T ss_pred             CceeeeecccccCCCCcEEEEEEcCCCCE-EEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeC
Confidence            4   233444  78999999999999874 8899999999999988766  55667889999999999999999999999


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      |+.+++||.++++.+..+   .+|.+.|.+++|+|++++|++++.|+.|++||+..   ++....               
T Consensus       162 dg~v~~~d~~~~~~~~~~---~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~---~~~~~~---------------  220 (337)
T 1gxr_A          162 DGNIAVWDLHNQTLVRQF---QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQ---------------  220 (337)
T ss_dssp             TSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEE---------------
T ss_pred             CCcEEEEeCCCCceeeee---ecccCceEEEEECCCCCEEEEEecCCcEEEEECCC---CceEee---------------
Confidence            999999999988877665   36889999999999999999999999999999752   100000               


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~  368 (609)
                                                                 + .                                  
T Consensus       221 -------------------------------------------~-~----------------------------------  222 (337)
T 1gxr_A          221 -------------------------------------------H-D----------------------------------  222 (337)
T ss_dssp             -------------------------------------------E-E----------------------------------
T ss_pred             -------------------------------------------e-c----------------------------------
Confidence                                                       0 0                                  


Q ss_pred             ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283          369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF  448 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (609)
                                                                                                   +..
T Consensus       223 -----------------------------------------------------------------------------~~~  225 (337)
T 1gxr_A          223 -----------------------------------------------------------------------------FTS  225 (337)
T ss_dssp             -----------------------------------------------------------------------------CSS
T ss_pred             -----------------------------------------------------------------------------CCC
Confidence                                                                                         001


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK  528 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~  528 (609)
                      ++.+++++|+++++++++.|+.|++|++.....   ..+..|.+.|.+++|+|+++++++++.|+.+++||+.+.+... 
T Consensus       226 ~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~-  301 (337)
T 1gxr_A          226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-  301 (337)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSSCE---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE-
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe---EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEE-
Confidence            245677899999999999999999999987653   4567899999999999999999999999999999988776542 


Q ss_pred             eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       529 ~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                       ...|...|++++|+|++++|++++.||.|++|++
T Consensus       302 -~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          302 -QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -EEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -EecCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence             3458899999999999999999999999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=2.7e-39  Score=331.27  Aligned_cols=349  Identities=17%  Similarity=0.207  Sum_probs=267.0

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCee
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV  138 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (609)
                      .+++++|+|+|++|++++.|++|++||..+.+... .                                           
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~-~-------------------------------------------   93 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK-M-------------------------------------------   93 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT-T-------------------------------------------
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceee-E-------------------------------------------
Confidence            35578999999999999999999999987643210 0                                           


Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK  218 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~  218 (609)
                        +..| ..+....|+|++. .+++|+.|+.+++|+....+....+.+|...|++++|+|++++|++++.|+.+++||..
T Consensus        94 --~~~~-~~~~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~  169 (420)
T 3vl1_A           94 --LKRA-DYTAVDTAKLQMR-RFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVK  169 (420)
T ss_dssp             --SCSC-CEEEEEEECSSSC-EEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             --EecC-CceEEEEEecCCC-EEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence              0111 1223345667776 48889999999999998888888888999999999999999999999999999999999


Q ss_pred             CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283          219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI  298 (609)
Q Consensus       219 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (609)
                      +++.+..+   .+|.+.|.+++|+|++++|++++.|++|++||+..   ++....+..                      
T Consensus       170 ~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~---~~~~~~~~~----------------------  221 (420)
T 3vl1_A          170 DGSNPRTL---IGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT---GTTIHTFNR----------------------  221 (420)
T ss_dssp             TCCCCEEE---ECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT---TEEEEEECB----------------------
T ss_pred             CCcCceEE---cCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC---CceeEEeec----------------------
Confidence            98877666   37999999999999999999999999999999863   333222211                      


Q ss_pred             EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCC
Q 007283          299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE  378 (609)
Q Consensus       299 ~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (609)
                                           ...|...|.++.+.+.....         +             .               
T Consensus       222 ---------------------~~~~~~~v~~~~~~~~~~~~---------~-------------~---------------  243 (420)
T 3vl1_A          222 ---------------------KENPHDGVNSIALFVGTDRQ---------L-------------H---------------  243 (420)
T ss_dssp             ---------------------TTBTTCCEEEEEEEECCCSS---------C-------------G---------------
T ss_pred             ---------------------CCCCCCCccEEEEecCCcce---------e-------------e---------------
Confidence                                 01244455555543221100         0             0               


Q ss_pred             cEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC
Q 007283          379 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD  458 (609)
Q Consensus       379 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  458 (609)
                                                                                       .....++.+++++|+
T Consensus       244 -----------------------------------------------------------------~~~~~~v~~~~~s~~  258 (420)
T 3vl1_A          244 -----------------------------------------------------------------EISTSKKNNLEFGTY  258 (420)
T ss_dssp             -----------------------------------------------------------------GGCCCCCCTTCSSCT
T ss_pred             -----------------------------------------------------------------ecccCcccceEEcCC
Confidence                                                                             000123556678999


Q ss_pred             CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCC-EEEEEeCCCeEEEEEccCCceEEeeecC-CCCc
Q 007283          459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVS-MFASGDVNREAIVWDRVSREVKLKNMLY-HTAR  536 (609)
Q Consensus       459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~-h~~~  536 (609)
                      ++++++|+.||.|++||++.+... .....+|...|.+++|+|++. ++++|+.|+.+++||+.+.+..+..+.. |...
T Consensus       259 ~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~  337 (420)
T 3vl1_A          259 GKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTP  337 (420)
T ss_dssp             TEEEEEEETTSCEEEEETTTCCEE-EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcee-EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCC
Confidence            999999999999999999876543 233457899999999999999 9999999999999999876543334444 7778


Q ss_pred             eEEEEECCCCcEEEEEeCCCeEEEEEcCCCCC-------cceeEeccccCCeEEEEEc-CCC---eEEEEeCCCcEEEEE
Q 007283          537 INCLAWSPNNSMVATGSLDTCVIIYEIDKPAS-------SRMTIKGAHLGGVYGLAFT-DEH---SVVSSGEDACVRVWR  605 (609)
Q Consensus       537 i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~-------~~~~~~~~h~~~v~~~~~s-~~~---~l~s~s~D~~i~~W~  605 (609)
                      |+++.+ |++++|++++.|++|++|++..+..       .......+|.+.|.+++|+ +++   .++++|.++.+.+|+
T Consensus       338 v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          338 INNVYF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EEEEEE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             ceEEEe-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            888865 5789999999999999999875321       1123455789999999999 666   689999999999999


Q ss_pred             ccC
Q 007283          606 LTP  608 (609)
Q Consensus       606 ~~~  608 (609)
                      +..
T Consensus       417 ~~~  419 (420)
T 3vl1_A          417 LSN  419 (420)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            864

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.6e-38  Score=313.40  Aligned_cols=300  Identities=16%  Similarity=0.160  Sum_probs=234.5

Q ss_pred             ccccccCCCCcEEEEE-----CC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCC
Q 007283           50 VSIYGEHAYPATVARF-----SP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKG  123 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~-----sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~  123 (609)
                      ...+.+|++.|++++|     +| +|++||||+.|++|+|||+.+.+....                             
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----------------------------   64 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----------------------------   64 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----------------------------
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----------------------------
Confidence            3468899999999999     77 999999999999999999865431000                             


Q ss_pred             cceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEE
Q 007283          124 KSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKF  203 (609)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l  203 (609)
                                .+.....+.+|...|.+++|+|++.+ +++|+.|+.+++||..+++....+.+|...|.+++|+|++++|
T Consensus        65 ----------~~~~~~~l~~h~~~V~~~~~~~~~~~-l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l  133 (343)
T 2xzm_R           65 ----------FGIPHKALTGHNHFVSDLALSQENCF-AISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI  133 (343)
T ss_dssp             ----------SEEEEEEECCCSSCEEEEEECSSTTE-EEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEE
T ss_pred             ----------cccccchhccCCCceEEEEECCCCCE-EEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEE
Confidence                      00112346789999999999999874 8999999999999999998888999999999999999999999


Q ss_pred             EEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC----------CeEEEEeCCCcEEEeecccCCCCceEEE
Q 007283          204 ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG----------KQVLTASADKSAKVWDISEDNHGKLKKT  273 (609)
Q Consensus       204 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~----------~~l~s~s~d~~i~iwd~~~~~~~~~~~~  273 (609)
                      ++++.|+++++||..... ........+|...|.+++|+|++          .+|++++.|++|++||..    .+.   
T Consensus       134 ~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~----~~~---  205 (343)
T 2xzm_R          134 LSAGAEREIKLWNILGEC-KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN----FQI---  205 (343)
T ss_dssp             EEEETTSCEEEEESSSCE-EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT----TEE---
T ss_pred             EEEcCCCEEEEEeccCCc-eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC----Cce---
Confidence            999999999999987433 22232234788999999999987          689999999999999842    111   


Q ss_pred             eccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEe
Q 007283          274 LTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWI  353 (609)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~  353 (609)
                                                                 ...+.+|...|.++++++ +++++++++.|++|++|+
T Consensus       206 -------------------------------------------~~~~~~h~~~v~~~~~s~-~g~~l~sgs~dg~v~iwd  241 (343)
T 2xzm_R          206 -------------------------------------------RYTFKAHESNVNHLSISP-NGKYIATGGKDKKLLIWD  241 (343)
T ss_dssp             -------------------------------------------EEEEECCSSCEEEEEECT-TSSEEEEEETTCEEEEEE
T ss_pred             -------------------------------------------eEEEcCccccceEEEECC-CCCEEEEEcCCCeEEEEE
Confidence                                                       123456888999999875 567999999999999997


Q ss_pred             cCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEE
Q 007283          354 QGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVV  433 (609)
Q Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (609)
                      ......         .                                                                
T Consensus       242 ~~~~~~---------~----------------------------------------------------------------  248 (343)
T 2xzm_R          242 ILNLTY---------P----------------------------------------------------------------  248 (343)
T ss_dssp             SSCCSS---------C----------------------------------------------------------------
T ss_pred             CCCCcc---------c----------------------------------------------------------------
Confidence            621100         0                                                                


Q ss_pred             EeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEe-----------cCCCceEEEEECCC
Q 007283          434 LLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE-----------KHRGAVSVIRYSPD  502 (609)
Q Consensus       434 ~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~-----------~h~~~i~~v~~s~~  502 (609)
                             ...+.....+.+++|+|+++++++| .|+.|++|++.+........+.           +|...|.+++|+|+
T Consensus       249 -------~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~  320 (343)
T 2xzm_R          249 -------QREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNAL  320 (343)
T ss_dssp             -------SEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSS
T ss_pred             -------ceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCC
Confidence                   0000112347889999999987755 5888999998765432212222           68889999999999


Q ss_pred             CCEEEEEeCCCeEEEEEccC
Q 007283          503 VSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       503 ~~~l~s~s~d~~v~iwd~~~  522 (609)
                      |.+|++|+.|++|++|++.+
T Consensus       321 g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          321 GKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             SCCEEEEETTSEEEEEEEEE
T ss_pred             CCeEEEecCCceEEEEEEEc
Confidence            99999999999999999754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.3e-38  Score=315.29  Aligned_cols=289  Identities=15%  Similarity=0.138  Sum_probs=231.7

Q ss_pred             CCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCC-----CCc------cccccccCCCCcEEEEECCCCCEEEEEeCCC
Q 007283           11 VPSTERGRGILISGHPKSNSILYTNGRSVIILDLS-----NPL------QVSIYGEHAYPATVARFSPNGEWIASADVSG   79 (609)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~-----~~~------~~~~~~~h~~~v~~~~~sp~g~~las~~~d~   79 (609)
                      .|..+.+....+.++|||..|+...+..+++||..     ...      .......|+..|++++|+|++ +|++|+.||
T Consensus        25 ~~~~~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg  103 (344)
T 4gqb_B           25 APACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSG  103 (344)
T ss_dssp             SCSSCCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTS
T ss_pred             CcccccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCC
Confidence            34444556679999999999988776666666521     111      111122456789999999996 577899999


Q ss_pred             cEEEEcCCCCcee---eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeC
Q 007283           80 TVRIWGAHNDHVL---KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS  156 (609)
Q Consensus        80 ~i~vWd~~~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (609)
                      +|||||+.+++.+   ...+.+|.+.|.+++|+|||++|++++.+.   .+++|+..+++.+..+.+|...|.+++|+|+
T Consensus       104 ~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~---~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~  180 (344)
T 4gqb_B          104 AVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI---CIKVWDLAQQVVLSSYRAHAAQVTCVAASPH  180 (344)
T ss_dssp             EEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECSS
T ss_pred             EEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEEEEEcCcCCceEEEEecCC
Confidence            9999999887632   234557899999999999999999988654   5789999899999999999999999999999


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCceeeec--cCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCc
Q 007283          157 RPFRIATCGEDFLVNFYEGPPFKFKLSH--RGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK  233 (609)
Q Consensus       157 ~~~~i~t~~~d~~i~~~~~~~~~~~~~~--~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~  233 (609)
                      +..++++|+.|+.|++||..+++....+  ..|...+.+++|+|+ +++|++|+.|++|++||.++++.+..+   .+|.
T Consensus       181 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~---~~h~  257 (344)
T 4gqb_B          181 KDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSS---AVHS  257 (344)
T ss_dssp             CTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEE---ECCS
T ss_pred             CCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEE---cCCC
Confidence            9878999999999999999888776655  346667999999996 568899999999999999999887766   3799


Q ss_pred             cceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCC
Q 007283          234 GSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND  312 (609)
Q Consensus       234 ~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  312 (609)
                      +.|++++|+|++ ++|++++.|++|++||+..   +++                                          
T Consensus       258 ~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~---~~~------------------------------------------  292 (344)
T 4gqb_B          258 QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL---SEL------------------------------------------  292 (344)
T ss_dssp             SCEEEEEECSSSSCCEEEEETTSCEEEECTTC---CEE------------------------------------------
T ss_pred             CCEEEEEEccCCCeEEEEEeCCCeEEEEECCC---CcE------------------------------------------
Confidence            999999999998 5799999999999999752   111                                          


Q ss_pred             CCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCc
Q 007283          313 LEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGI  356 (609)
Q Consensus       313 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~  356 (609)
                           ..+.+|...|.+++|++.++.+++|++.|++|++|+...
T Consensus       293 -----~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          293 -----FRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             -----EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             -----EEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence                 123579999999999876667899999999999997754

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-38  Score=322.69  Aligned_cols=356  Identities=14%  Similarity=0.185  Sum_probs=263.9

Q ss_pred             EEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC----CCCc------eeeeccC----------c
Q 007283          128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG----PPFK------FKLSHRG----------H  187 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~----~~~~------~~~~~~~----------h  187 (609)
                      .+|+|+..........|.+.|.+++|+|++...+++|+.|+.+++|+.    ..++      ....+..          |
T Consensus        28 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  107 (425)
T 1r5m_A           28 SSDDLDGFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKT  107 (425)
T ss_dssp             ------CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------
T ss_pred             ccccchhhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCC
Confidence            355565554444455677999999999999845999999999999998    7666      2333322          6


Q ss_pred             ccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCC
Q 007283          188 SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNH  267 (609)
Q Consensus       188 ~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~  267 (609)
                      ...|++++|+|++++|++++.|+.+++|| .+++.+..+   .+|...|.+++|+|++++|++++.|+.|++||+..   
T Consensus       108 ~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~---  180 (425)
T 1r5m_A          108 TNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVL---NFHRAPIVSVKWNKDGTHIISMDVENVTILWNVIS---  180 (425)
T ss_dssp             CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTT---
T ss_pred             CCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeec---cCCCccEEEEEECCCCCEEEEEecCCeEEEEECCC---
Confidence            78999999999999999999999999999 556655555   37899999999999999999999999999999863   


Q ss_pred             CceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCC
Q 007283          268 GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDG  347 (609)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg  347 (609)
                      ++....+........                     .+          .......+...+.++.+.+.  ..+++++.|+
T Consensus       181 ~~~~~~~~~~~~~~~---------------------~~----------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g  227 (425)
T 1r5m_A          181 GTVMQHFELKETGGS---------------------SI----------NAENHSGDGSLGVDVEWVDD--DKFVIPGPKG  227 (425)
T ss_dssp             TEEEEEECCC----------------------------------------------CCCBSCCEEEET--TEEEEECGGG
T ss_pred             CcEEEEeeccccCcc---------------------ce----------eeccccCCcceeeEEEEcCC--CEEEEEcCCC
Confidence            344443322110000                     00          00011122233666677654  5789999999


Q ss_pred             cEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEE
Q 007283          348 LIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVS  427 (609)
Q Consensus       348 ~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (609)
                      .|++|+........                                                                  
T Consensus       228 ~i~~~d~~~~~~~~------------------------------------------------------------------  241 (425)
T 1r5m_A          228 AIFVYQITEKTPTG------------------------------------------------------------------  241 (425)
T ss_dssp             CEEEEETTCSSCSE------------------------------------------------------------------
T ss_pred             eEEEEEcCCCceee------------------------------------------------------------------
Confidence            99999764321000                                                                  


Q ss_pred             ecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEE
Q 007283          428 TDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFA  507 (609)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~  507 (609)
                                    ....+..++.+++++|+++++++++.|+.|++|++..+..  ...+.+|...|.+++|+|++ +++
T Consensus       242 --------------~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~  304 (425)
T 1r5m_A          242 --------------KLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD-KVI  304 (425)
T ss_dssp             --------------EECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSC--SEEECCCSSCEEEEEEETTT-EEE
T ss_pred             --------------eeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCcc--ceEecCCCccEEEEEECCCC-EEE
Confidence                          0001224578899999999999999999999999976544  35667899999999999999 999


Q ss_pred             EEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCC------------------c
Q 007283          508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPAS------------------S  569 (609)
Q Consensus       508 s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~------------------~  569 (609)
                      +++.|+.+++||+.+.+. +..+..|...|++++|+|++++|++++.|+.|++|++.....                  .
T Consensus       305 ~~~~d~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (425)
T 1r5m_A          305 SCSMDGSVRLWSLKQNTL-LALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIP  383 (425)
T ss_dssp             EEETTSEEEEEETTTTEE-EEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECC
T ss_pred             EEeCCCcEEEEECCCCcE-eEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccch
Confidence            999999999999877654 345667899999999999999999999999999999864220                  0


Q ss_pred             ceeEeccccC--CeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          570 RMTIKGAHLG--GVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       570 ~~~~~~~h~~--~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ......+|..  .|++++|+ ++++|++++.|+.|++|++.
T Consensus       384 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          384 LYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             hhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence            3455567866  99999999 77899999999999999985

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.5e-38  Score=310.35  Aligned_cols=301  Identities=23%  Similarity=0.325  Sum_probs=234.3

Q ss_pred             eEEEecCCccEEEEEE-----ee-CCCeEEEEecCCCeEEEEeCCCC-------ceeeeccCcccceEEEEEcCCCCEEE
Q 007283          138 VGEFDGHSRRVLSCAF-----KP-SRPFRIATCGEDFLVNFYEGPPF-------KFKLSHRGHSNFVNCVRFSPDGSKFI  204 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~-----~p-~~~~~i~t~~~d~~i~~~~~~~~-------~~~~~~~~h~~~v~~l~~s~dg~~l~  204 (609)
                      ...+.+|.+.|.+++|     +| ++. .|++|+.|+++++|+....       .....+.+|...|++++|+|++.+|+
T Consensus        14 ~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           14 RGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            4578899999999999     66 555 6999999999999997532       34456789999999999999999999


Q ss_pred             EEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283          205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD  284 (609)
Q Consensus       205 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  284 (609)
                      +++.|+++++||.++++.+..+   .+|.+.|.+++|+|++++|++++.|++|++||+..    ......          
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~---~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~----~~~~~~----------  155 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRF---VGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG----ECKFSS----------  155 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEE---ECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS----CEEEEC----------
T ss_pred             EEcCCCcEEEEECCCCcEEEEE---cCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC----Cceeee----------
Confidence            9999999999999999877666   37999999999999999999999999999999751    111000          


Q ss_pred             eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc
Q 007283          285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR  364 (609)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~  364 (609)
                                                       ....+|...|.++++++....                          
T Consensus       156 ---------------------------------~~~~~~~~~v~~~~~~~~~~~--------------------------  176 (343)
T 2xzm_R          156 ---------------------------------AEKENHSDWVSCVRYSPIMKS--------------------------  176 (343)
T ss_dssp             ---------------------------------CTTTSCSSCEEEEEECCCCCS--------------------------
T ss_pred             ---------------------------------ecccCCCceeeeeeecccccc--------------------------
Confidence                                             001245566666655421000                          


Q ss_pred             ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe
Q 007283          365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI  444 (609)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (609)
                                                                                                      
T Consensus       177 --------------------------------------------------------------------------------  176 (343)
T 2xzm_R          177 --------------------------------------------------------------------------------  176 (343)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCc
Q 007283          445 NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSRE  524 (609)
Q Consensus       445 ~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~  524 (609)
                             ...+.|.+.++++|+.|++|++||.. ..  ....+.+|.+.|.+++|+|+|++|++|+.|++|++||+....
T Consensus       177 -------~~~~~~~~~~l~s~~~d~~i~iwd~~-~~--~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          177 -------ANKVQPFAPYFASVGWDGRLKVWNTN-FQ--IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             -------CSCCCSSCCEEEEEETTSEEEEEETT-TE--EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             -------ccccCCCCCEEEEEcCCCEEEEEcCC-Cc--eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence                   00124567789999999999999943 22  245678999999999999999999999999999999985433


Q ss_pred             eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEe-----------ccccCCeEEEEEc-CCCeE
Q 007283          525 VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIK-----------GAHLGGVYGLAFT-DEHSV  592 (609)
Q Consensus       525 ~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~-----------~~h~~~v~~~~~s-~~~~l  592 (609)
                      ..... ..+...|++++|+|++++++++ .|+.|++|++...........           .+|...|++++|+ ++++|
T Consensus       247 ~~~~~-~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l  324 (343)
T 2xzm_R          247 YPQRE-FDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKL  324 (343)
T ss_dssp             SCSEE-EECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCE
T ss_pred             cccee-ecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCCeE
Confidence            22222 2356679999999999988755 588899999875332111111           2688999999999 78899


Q ss_pred             EEEeCCCcEEEEEcc
Q 007283          593 VSSGEDACVRVWRLT  607 (609)
Q Consensus       593 ~s~s~D~~i~~W~~~  607 (609)
                      ++++.||+|++|++.
T Consensus       325 ~sg~~Dg~v~~w~~~  339 (343)
T 2xzm_R          325 FAGFTDGVIRTFSFE  339 (343)
T ss_dssp             EEEETTSEEEEEEEE
T ss_pred             EEecCCceEEEEEEE
Confidence            999999999999985

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.2e-38  Score=307.27  Aligned_cols=205  Identities=21%  Similarity=0.290  Sum_probs=180.5

Q ss_pred             cccccCCCCcEEEEECCCC-CEEEEEeCCCcEEEEcCCCCc----eeeEEEeecccceeEEEECCCCCEEEEEECCCCcc
Q 007283           51 SIYGEHAYPATVARFSPNG-EWIASADVSGTVRIWGAHNDH----VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS  125 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g-~~las~~~d~~i~vWd~~~~~----~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~  125 (609)
                      ..+.+|.+.|++++|+|++ ++|+||+.|++|++|++....    .....+..|...|.+++|+|||++|++++.+.   
T Consensus        11 ~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~---   87 (319)
T 3frx_A           11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDK---   87 (319)
T ss_dssp             EEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS---
T ss_pred             EEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCC---
Confidence            4578999999999999965 899999999999999986432    23356788999999999999999999988654   


Q ss_pred             eEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC------
Q 007283          126 LVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD------  199 (609)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d------  199 (609)
                      .+++|+..++..+..+.+|...|.+++|+|++. .+++|+.|+.+++||.. .+....+.+|...|.++.|+|.      
T Consensus        88 ~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~  165 (319)
T 3frx_A           88 TLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDD  165 (319)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------
T ss_pred             EEEEEECCCCCeeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCC
Confidence            588898888888999999999999999999987 49999999999999986 4566678899999999999985      


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          200 GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       200 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +..|++++.|+.+++||..+.+....+   .+|...|.+++|+|++++|++++.|++|++||+.
T Consensus       166 ~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~  226 (319)
T 3frx_A          166 SVTIISAGNDKMVKAWNLNQFQIEADF---IGHNSNINTLTASPDGTLIASAGKDGEIMLWNLA  226 (319)
T ss_dssp             CCEEEEEETTSCEEEEETTTTEEEEEE---CCCCSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             ccEEEEEeCCCEEEEEECCcchhheee---cCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            448999999999999999887766555   4799999999999999999999999999999975

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-39  Score=333.52  Aligned_cols=340  Identities=11%  Similarity=0.134  Sum_probs=262.1

Q ss_pred             CCcEEEEECCCCC-EEEEE----------eCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcce
Q 007283           58 YPATVARFSPNGE-WIASA----------DVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL  126 (609)
Q Consensus        58 ~~v~~~~~sp~g~-~las~----------~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~  126 (609)
                      ..|.+++|+|+|+ +||++          +.|++|+|||+.+++....                                
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~--------------------------------   60 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP--------------------------------   60 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC--------------------------------
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE--------------------------------
Confidence            4688999999997 99999          8899999999987542100                                


Q ss_pred             EEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC----CceeeeccCcccceEEEEEcCC-CC
Q 007283          127 VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP----FKFKLSHRGHSNFVNCVRFSPD-GS  201 (609)
Q Consensus       127 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~----~~~~~~~~~h~~~v~~l~~s~d-g~  201 (609)
                                 +. ...|...|.+++|+|++.. |++++.|+.+++|+...    .+....+.+|...|++++|+|+ ++
T Consensus        61 -----------~~-~~~~~~~v~~~~~s~~~~~-l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  127 (416)
T 2pm9_A           61 -----------IA-SLQVDSKFNDLDWSHNNKI-IAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN  127 (416)
T ss_dssp             -----------SC-CCCCSSCEEEEEECSSSSC-EEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT
T ss_pred             -----------EE-EEecCCceEEEEECCCCCe-EEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC
Confidence                       00 0135566777788777764 78888888999998776    3466778899999999999998 88


Q ss_pred             EEEEEeCCCcEEEEeCCCCc------cccccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeecccCCCCceEEEe
Q 007283          202 KFISVSSDKKGIIYDGKTAD------KIGELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       202 ~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  274 (609)
                      +|++++.|+.|++||..+++      ....+....+|...|.+++|+|+ +.+|++++.|+.|++||+..   ++....+
T Consensus       128 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~---~~~~~~~  204 (416)
T 2pm9_A          128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA---KKEVIHL  204 (416)
T ss_dssp             BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT---TEEEEEE
T ss_pred             EEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC---CCcceEE
Confidence            99999999999999998876      33333233578999999999999 78999999999999999863   2232222


Q ss_pred             ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCC---cEEE
Q 007283          275 TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDG---LIVK  351 (609)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg---~i~~  351 (609)
                      ...                                        ....+|...|.++++++.++.++++++.|+   .|++
T Consensus       205 ~~~----------------------------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          205 SYT----------------------------------------SPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILI  244 (416)
T ss_dssp             CCC----------------------------------------CCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred             ecc----------------------------------------ccccccCCceEEEEECCCCCCEEEEEECCCCCceEEE
Confidence            110                                        011346788999999876567999999999   9999


Q ss_pred             EecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEeccc
Q 007283          352 WIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSG  431 (609)
Q Consensus       352 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  431 (609)
                      |+......         .+..                            +                              
T Consensus       245 ~d~~~~~~---------~~~~----------------------------~------------------------------  257 (416)
T 2pm9_A          245 WDLRNANT---------PLQT----------------------------L------------------------------  257 (416)
T ss_dssp             EETTSTTS---------CSBC----------------------------C------------------------------
T ss_pred             EeCCCCCC---------CcEE----------------------------e------------------------------
Confidence            97653210         0000                            0                              


Q ss_pred             EEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC-CEEEEE
Q 007283          432 VVLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV-SMFASG  509 (609)
Q Consensus       432 ~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~-~~l~s~  509 (609)
                          .       ..+...+.+++++| +++++++|+.|+.|++||++.+..  ...+.+|.+.|.+++|+|++ .+++++
T Consensus       258 ----~-------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          258 ----N-------QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ--LSQFPARGNWCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             ----C-------SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE--EEEEECSSSCCCCEEECTTCTTEEEEC
T ss_pred             ----e-------cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc--ceeecCCCCceEEEEECCCCCCEEEEE
Confidence                0       01124578899999 999999999999999999987654  45678999999999999999 899999


Q ss_pred             eCCCeEEEEEccCCceEEe----------------------------------eecCCCCceEEEEECCCCcEEEEEeCC
Q 007283          510 DVNREAIVWDRVSREVKLK----------------------------------NMLYHTARINCLAWSPNNSMVATGSLD  555 (609)
Q Consensus       510 s~d~~v~iwd~~~~~~~~~----------------------------------~~~~h~~~i~~l~~s~d~~~l~s~s~D  555 (609)
                      +.|+.+++||+.+......                                  ....|...+++++|||||++||+++.|
T Consensus       325 ~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d  404 (416)
T 2pm9_A          325 SFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDG  404 (416)
T ss_dssp             CSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTS
T ss_pred             ecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCC
Confidence            9999999999876432110                                  011166778899999999999999999


Q ss_pred             CeEEEEEcCC
Q 007283          556 TCVIIYEIDK  565 (609)
Q Consensus       556 ~~v~vw~~~~  565 (609)
                      ++|+||++.+
T Consensus       405 ~~v~~w~~~~  414 (416)
T 2pm9_A          405 KGVSITNPKI  414 (416)
T ss_dssp             SCBCCBCCCC
T ss_pred             CeEEEEEecc
Confidence            9999999865

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.6e-37  Score=313.10  Aligned_cols=285  Identities=22%  Similarity=0.371  Sum_probs=229.3

Q ss_pred             cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcc------------------cceEEEEEcCCCCEEE
Q 007283          143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHS------------------NFVNCVRFSPDGSKFI  204 (609)
Q Consensus       143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~------------------~~v~~l~~s~dg~~l~  204 (609)
                      +|...|.+++|+|++.+ +|+|+ ++.+++|+...++....+.+|.                  ..|.+++|+|+|++|+
T Consensus        62 ~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~  139 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  139 (393)
T ss_dssp             ECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEE
Confidence            69999999999999985 77765 6789999998887766665543                  2499999999999999


Q ss_pred             EEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283          205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD  284 (609)
Q Consensus       205 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  284 (609)
                      +|+.|+.|++||..+++.+..+   .+|...|.+++|+|++++|++++.|++|++||+..   ++....           
T Consensus       140 s~~~d~~i~iwd~~~~~~~~~~---~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~---~~~~~~-----------  202 (393)
T 1erj_A          140 TGAEDRLIRIWDIENRKIVMIL---QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLT-----------  202 (393)
T ss_dssp             EEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEE-----------
T ss_pred             EEcCCCeEEEEECCCCcEEEEE---ccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCC---CeeEEE-----------
Confidence            9999999999999988877665   47999999999999999999999999999999752   100000           


Q ss_pred             eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc
Q 007283          285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR  364 (609)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~  364 (609)
                                                         +. +                                         
T Consensus       203 -----------------------------------~~-~-----------------------------------------  205 (393)
T 1erj_A          203 -----------------------------------LS-I-----------------------------------------  205 (393)
T ss_dssp             -----------------------------------EE-C-----------------------------------------
T ss_pred             -----------------------------------EE-c-----------------------------------------
Confidence                                               00 0                                         


Q ss_pred             ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe
Q 007283          365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI  444 (609)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (609)
                                                                                                      
T Consensus       206 --------------------------------------------------------------------------------  205 (393)
T 1erj_A          206 --------------------------------------------------------------------------------  205 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeE-----EEecCCCceEEEEECCCCCEEEEEeCCCeEEEE
Q 007283          445 NLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEA-----VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW  518 (609)
Q Consensus       445 ~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~-----~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iw  518 (609)
                        ...+.+++++| +++++++|+.|+.|++||+..+.+....     ...+|...|.+++|+|+++++++|+.|++|++|
T Consensus       206 --~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~w  283 (393)
T 1erj_A          206 --EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW  283 (393)
T ss_dssp             --SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             --CCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEE
Confidence              01134556777 8899999999999999998876543211     125799999999999999999999999999999


Q ss_pred             EccCCce-----------EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc
Q 007283          519 DRVSREV-----------KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT  587 (609)
Q Consensus       519 d~~~~~~-----------~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s  587 (609)
                      |+.+...           ....+.+|...|++++|+|++++|++|+.|++|++||+..+.  ....+.+|...|.+++|+
T Consensus       284 d~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~--~~~~l~~h~~~v~~v~~~  361 (393)
T 1erj_A          284 NLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN--PLLMLQGHRNSVISVAVA  361 (393)
T ss_dssp             EC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCC--EEEEEECCSSCEEEEEEC
T ss_pred             ECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCe--EEEEECCCCCCEEEEEec
Confidence            9865321           123456899999999999999999999999999999987643  345567899999999997


Q ss_pred             C-------CCeEEEEeCCCcEEEEEcc
Q 007283          588 D-------EHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       588 ~-------~~~l~s~s~D~~i~~W~~~  607 (609)
                      +       +++|+|+|.|++|++|++.
T Consensus       362 ~~~~~~p~~~~l~sgs~Dg~i~iW~~~  388 (393)
T 1erj_A          362 NGSSLGPEYNVFATGSGDCKARIWKYK  388 (393)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCcCcCCCCCEEEEECCCCcEEECccc
Confidence            4       4679999999999999985

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7e-39  Score=327.75  Aligned_cols=345  Identities=10%  Similarity=0.136  Sum_probs=264.1

Q ss_pred             ccEEEEEEeeCCCeEEEEe----------cCCCeEEEEeCCCCce--eeeccCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283          146 RRVLSCAFKPSRPFRIATC----------GEDFLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI  213 (609)
Q Consensus       146 ~~v~~~~~~p~~~~~i~t~----------~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~  213 (609)
                      ..|.+++|+|++..++++|          +.|+.+++|+....+.  ......|...|++++|+|++++|++++.|+.++
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            4678899999988679999          8999999999877652  222346888999999999999999999999999


Q ss_pred             EEeCCC----CccccccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          214 IYDGKT----ADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       214 iwd~~~----~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      +||..+    .+.+..+   .+|.+.|.+++|+|+ +.+|++++.|++|++||+........  ..              
T Consensus        93 vw~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~--~~--------------  153 (416)
T 2pm9_A           93 LYSTNEANNAINSMARF---SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPS--NY--------------  153 (416)
T ss_dssp             EECCSSTTSCCCEEEEC---CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTT--TC--------------
T ss_pred             Eeecccccccccchhhc---cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccc--cc--------------
Confidence            999887    2344443   479999999999998 89999999999999999864210000  00              


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~  368 (609)
                                              .........+|...|.++++++..+.++++++.|+.|++|+...+....       
T Consensus       154 ------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~-------  202 (416)
T 2pm9_A          154 ------------------------TPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVI-------  202 (416)
T ss_dssp             ------------------------CCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEE-------
T ss_pred             ------------------------cccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcce-------
Confidence                                    0000112346888999999986556899999999999999865421000       


Q ss_pred             ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283          369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF  448 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (609)
                                            .+.....                                             ...+..
T Consensus       203 ----------------------~~~~~~~---------------------------------------------~~~~~~  215 (416)
T 2pm9_A          203 ----------------------HLSYTSP---------------------------------------------NSGIKQ  215 (416)
T ss_dssp             ----------------------EECCCCC---------------------------------------------SSCCCC
T ss_pred             ----------------------EEecccc---------------------------------------------ccccCC
Confidence                                  0000000                                             000124


Q ss_pred             ceeEEEEcCCC-CEEEEEeCCC---cEEEEEecCCeeeeeEEEe-cCCCceEEEEECC-CCCEEEEEeCCCeEEEEEccC
Q 007283          449 PVTASAIAPDG-SEAIIGSQDG---KLRVYSIRGDTLTEEAVLE-KHRGAVSVIRYSP-DVSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       449 ~~~~~~~sp~g-~~l~~gs~dg---~i~iw~~~~~~~~~~~~~~-~h~~~i~~v~~s~-~~~~l~s~s~d~~v~iwd~~~  522 (609)
                      ++.+++++|++ .++++++.|+   .|++||++.... ....+. +|...|.+++|+| ++.++++++.|+++++||+.+
T Consensus       216 ~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~  294 (416)
T 2pm9_A          216 QLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT-PLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPES  294 (416)
T ss_dssp             CEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS-CSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSS
T ss_pred             ceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC-CcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCC
Confidence            58899999997 6899999999   999999986522 134556 8999999999999 999999999999999999887


Q ss_pred             CceEEeeecCCCCceEEEEECCCC-cEEEEEeCCCeEEEEEcCCCCCccee-----------------------------
Q 007283          523 REVKLKNMLYHTARINCLAWSPNN-SMVATGSLDTCVIIYEIDKPASSRMT-----------------------------  572 (609)
Q Consensus       523 ~~~~~~~~~~h~~~i~~l~~s~d~-~~l~s~s~D~~v~vw~~~~~~~~~~~-----------------------------  572 (609)
                      .+. +..+..|...|++++|+|++ ++|++++.|+.|++|++.........                             
T Consensus       295 ~~~-~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (416)
T 2pm9_A          295 AEQ-LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSV  373 (416)
T ss_dssp             CCE-EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCS
T ss_pred             Ccc-ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccccccc
Confidence            654 44567899999999999999 89999999999999999753311100                             


Q ss_pred             ----EeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEccCC
Q 007283          573 ----IKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLTPN  609 (609)
Q Consensus       573 ----~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~~  609 (609)
                          ....|...+.+++|+ ++++|++++.|++|++|++.++
T Consensus       374 ~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          374 FHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             SCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence                001167788899999 7788899999999999999764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.6e-37  Score=303.92  Aligned_cols=326  Identities=14%  Similarity=0.156  Sum_probs=255.7

Q ss_pred             CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007283          144 HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI  223 (609)
Q Consensus       144 h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~  223 (609)
                      +...|.+++|+|++.. ++++..+..+..|..+.........+|...|++++|+|++++|++++ |+.+++||..+++..
T Consensus         8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~   85 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNK   85 (337)
T ss_dssp             EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCC
T ss_pred             cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCce
Confidence            3557889999999986 55555554444454444333444558999999999999999999998 999999999877644


Q ss_pred             cccCcC--CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEc
Q 007283          224 GELSPE--DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL  301 (609)
Q Consensus       224 ~~~~~~--~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (609)
                      ..+...  .+|...|.+++|+|++++|++++.|+.|++||+...   +..                              
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~---~~~------------------------------  132 (337)
T 1gxr_A           86 SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP---TPR------------------------------  132 (337)
T ss_dssp             SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----E------------------------------
T ss_pred             eeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---Ccc------------------------------
Confidence            333211  268899999999999999999999999999998631   100                              


Q ss_pred             CCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEE
Q 007283          302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIV  381 (609)
Q Consensus       302 ~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (609)
                                    ....+.+|...|.++++++ ++..+++++.||.|++|+...+..          +           
T Consensus       133 --------------~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~v~~~d~~~~~~----------~-----------  176 (337)
T 1gxr_A          133 --------------IKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTL----------V-----------  176 (337)
T ss_dssp             --------------EEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEE----------E-----------
T ss_pred             --------------eeeecccCCCceEEEEECC-CCCEEEEEeCCCcEEEEeCCCCce----------e-----------
Confidence                          0122445778888888875 557899999999999997643210          0           


Q ss_pred             EEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCE
Q 007283          382 TSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSE  461 (609)
Q Consensus       382 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  461 (609)
                              ..+                                                   ..+..++.+++++|++++
T Consensus       177 --------~~~---------------------------------------------------~~~~~~i~~~~~~~~~~~  197 (337)
T 1gxr_A          177 --------RQF---------------------------------------------------QGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             --------EEE---------------------------------------------------CCCSSCEEEEEECTTSSE
T ss_pred             --------eee---------------------------------------------------ecccCceEEEEECCCCCE
Confidence                    000                                                   001245788999999999


Q ss_pred             EEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEE
Q 007283          462 AIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLA  541 (609)
Q Consensus       462 l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~  541 (609)
                      +++++.||.|++||++.+....   ...|...+.+++|+|++.++++++.|+.+++||+.+.+.  ..+..|...|++++
T Consensus       198 l~~~~~dg~i~~~d~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~--~~~~~~~~~v~~~~  272 (337)
T 1gxr_A          198 LWTGGLDNTVRSWDLREGRQLQ---QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK--YQLHLHESCVLSLK  272 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEE---EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE--EEECCCSSCEEEEE
T ss_pred             EEEEecCCcEEEEECCCCceEe---eecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCe--EEEcCCccceeEEE
Confidence            9999999999999998776432   235788999999999999999999999999999887654  24678999999999


Q ss_pred             ECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          542 WSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       542 ~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      |+|++++|++++.|+.|++|++....  . .....|...|.+++|+ ++++|++++.|+.|++|++.
T Consensus       273 ~~~~~~~l~~~~~dg~i~~~~~~~~~--~-~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~  336 (337)
T 1gxr_A          273 FAYCGKWFVSTGKDNLLNAWRTPYGA--S-IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI  336 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCC--E-EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred             ECCCCCEEEEecCCCcEEEEECCCCe--E-EEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence            99999999999999999999997643  2 2334688999999999 77899999999999999973

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.8e-36  Score=305.48  Aligned_cols=303  Identities=24%  Similarity=0.328  Sum_probs=232.3

Q ss_pred             ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCc------------------cEEEEEEeeCCCe
Q 007283           98 VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR------------------RVLSCAFKPSRPF  159 (609)
Q Consensus        98 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~------------------~v~~~~~~p~~~~  159 (609)
                      .|...|.+++|||||++|++.+++    .+++|+...+..+..+..|..                  .|.+++|+|++..
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~----~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~  137 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNK----TTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKF  137 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBS----CEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCC----cEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCE
Confidence            588899999999999999886542    467888888887777765532                  4899999999985


Q ss_pred             EEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283          160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV  239 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l  239 (609)
                       +++|+.|+.|++||..+.+....+.+|...|.+++|+|++++|++++.|+++++||.++++....+    .+...|.++
T Consensus       138 -l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~----~~~~~v~~~  212 (393)
T 1erj_A          138 -LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL----SIEDGVTTV  212 (393)
T ss_dssp             -EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEE
T ss_pred             -EEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE----EcCCCcEEE
Confidence             999999999999999999988899999999999999999999999999999999999998876655    356679999


Q ss_pred             EECC-CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCce
Q 007283          240 SWSP-DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPL  318 (609)
Q Consensus       240 ~~sp-d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~  318 (609)
                      +|+| ++++|++++.|++|++||+..   ++....+..                                       ...
T Consensus       213 ~~~~~~~~~l~~~s~d~~v~iwd~~~---~~~~~~~~~---------------------------------------~~~  250 (393)
T 1erj_A          213 AVSPGDGKYIAAGSLDRAVRVWDSET---GFLVERLDS---------------------------------------ENE  250 (393)
T ss_dssp             EECSTTCCEEEEEETTSCEEEEETTT---CCEEEEEC-------------------------------------------
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCC---CcEEEeecc---------------------------------------ccc
Confidence            9999 899999999999999999863   222222110                                       001


Q ss_pred             eeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCc
Q 007283          319 QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQ  398 (609)
Q Consensus       319 ~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  398 (609)
                      ...+|...|.+++|++ ++.++++++.|++|++|+........                                     
T Consensus       251 ~~~~h~~~v~~v~~~~-~g~~l~s~s~d~~v~~wd~~~~~~~~-------------------------------------  292 (393)
T 1erj_A          251 SGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKS-------------------------------------  292 (393)
T ss_dssp             --CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC--------------------------------------------
T ss_pred             CCCCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEECCCCCCcc-------------------------------------
Confidence            1235666777777653 34567777777777777542110000                                     


Q ss_pred             cccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC
Q 007283          399 CGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG  478 (609)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~  478 (609)
                                                                        ...    .+.                    
T Consensus       293 --------------------------------------------------~~~----~~~--------------------  298 (393)
T 1erj_A          293 --------------------------------------------------DSK----TPN--------------------  298 (393)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------ccc----CCC--------------------
Confidence                                                              000    000                    


Q ss_pred             CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECC------CCcEEEEE
Q 007283          479 DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSP------NNSMVATG  552 (609)
Q Consensus       479 ~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~------d~~~l~s~  552 (609)
                       .......+.+|...|.+++|+|++.++++|+.|++|++||..+++. +..+.+|...|++++|+|      ++++||||
T Consensus       299 -~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sg  376 (393)
T 1erj_A          299 -SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVISVAVANGSSLGPEYNVFATG  376 (393)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECSSCTTCTTCEEEEEE
T ss_pred             -CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeE-EEEECCCCCCEEEEEecCCcCcCCCCCEEEEE
Confidence             0011234568999999999999999999999999999999887664 445778999999999986      68999999


Q ss_pred             eCCCeEEEEEcCC
Q 007283          553 SLDTCVIIYEIDK  565 (609)
Q Consensus       553 s~D~~v~vw~~~~  565 (609)
                      +.|++|++|++..
T Consensus       377 s~Dg~i~iW~~~~  389 (393)
T 1erj_A          377 SGDCKARIWKYKK  389 (393)
T ss_dssp             ETTSEEEEEEEEE
T ss_pred             CCCCcEEECcccc
Confidence            9999999999853

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3e-37  Score=307.98  Aligned_cols=289  Identities=15%  Similarity=0.145  Sum_probs=229.9

Q ss_pred             CCccCcCceeEEeecCCCCeEEEeC-------CCEEEEEeCCCCcccc----ccccCCCCcEEEEECCCCCEEEEEeCCC
Q 007283           11 VPSTERGRGILISGHPKSNSILYTN-------GRSVIILDLSNPLQVS----IYGEHAYPATVARFSPNGEWIASADVSG   79 (609)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~i~~~~~~~~~~----~~~~h~~~v~~~~~sp~g~~las~~~d~   79 (609)
                      .|..|.+....++++|||..|+++.       +..+.+|+..++....    ...+|...|++++|+|++++|+ ++.||
T Consensus        37 ~p~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~-~s~dg  115 (357)
T 4g56_B           37 APACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILV-ASDSG  115 (357)
T ss_dssp             ---CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEE-EETTS
T ss_pred             CcccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEE-EECCC
Confidence            3566788888999999999999874       3478899887655322    2347899999999999997665 66899


Q ss_pred             cEEEEcCCCCcee---eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeC
Q 007283           80 TVRIWGAHNDHVL---KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS  156 (609)
Q Consensus        80 ~i~vWd~~~~~~~---~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~  156 (609)
                      +|+|||+.+++..   ......|...|.+++|+|||++|++++.+.   .+++|+...+..+..+.+|...|.+++|+|+
T Consensus       116 ~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg---~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  192 (357)
T 4g56_B          116 AVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF---SVKVWDLSQKAVLKSYNAHSSEVNCVAACPG  192 (357)
T ss_dssp             CEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS---CEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             EEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC---eEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence            9999999876532   233456888999999999999999987654   4788888888889999999999999999999


Q ss_pred             CCeEEEEecCCCeEEEEeCCCCceeee--ccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCccccccCcCCCCc
Q 007283          157 RPFRIATCGEDFLVNFYEGPPFKFKLS--HRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADKIGELSPEDGHK  233 (609)
Q Consensus       157 ~~~~i~t~~~d~~i~~~~~~~~~~~~~--~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~  233 (609)
                      +...+++++.|+.+++||..+.+....  +..|...+.+++|+|++ .+|++|+.|+.|++||.++++.+..+   .+|.
T Consensus       193 ~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~---~~~~  269 (357)
T 4g56_B          193 KDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTS---AVHS  269 (357)
T ss_dssp             CSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEE---CCCS
T ss_pred             CCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEE---eccc
Confidence            877799999999999999887765544  44677889999999985 58899999999999999998877666   3789


Q ss_pred             cceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCC
Q 007283          234 GSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND  312 (609)
Q Consensus       234 ~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  312 (609)
                      ..|++++|+|++ ++|++++.|++|++||++.   +++.                                         
T Consensus       270 ~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~---~~~~-----------------------------------------  305 (357)
T 4g56_B          270 QNITGLAYSYHSSPFLASISEDCTVAVLDADF---SEVF-----------------------------------------  305 (357)
T ss_dssp             SCEEEEEECSSSSCCEEEEETTSCEEEECTTS---CEEE-----------------------------------------
T ss_pred             eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCC---CcEe-----------------------------------------
Confidence            999999999987 5799999999999999852   2111                                         


Q ss_pred             CCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCc
Q 007283          313 LEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGI  356 (609)
Q Consensus       313 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~  356 (609)
                            ...+|...|.+++|++.++.+|+|++.||+|++|++..
T Consensus       306 ------~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~  343 (357)
T 4g56_B          306 ------RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPS  343 (357)
T ss_dssp             ------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC-
T ss_pred             ------EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCC
Confidence                  12358899999999876778999999999999998743

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.6e-36  Score=295.00  Aligned_cols=292  Identities=28%  Similarity=0.410  Sum_probs=243.5

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      ...+.+|.+.|++++|+|+|++||+++.|++|+||+..+++. ...+..|...|.+++|+||+++|++++.+.   .+++
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~---~i~v   91 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKF-EKTISGHKLGISDVAWSSDSNLLVSASDDK---TLKI   91 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTS---EEEE
T ss_pred             EEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCccc-chhhccCCCceEEEEEcCCCCEEEEECCCC---EEEE
Confidence            345789999999999999999999999999999999987664 446788999999999999999999988644   5788


Q ss_pred             EEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283          130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                      |+.+.+..+..+.+|...|.+++|+|++.. +++|+.|+.+++||..+.+....+.+|...|.+++|+|++++|++++.|
T Consensus        92 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           92 WDVSSGKCLKTLKGHSNYVFCCNFNPQSNL-IVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             EETTTCCEEEEEECCSSCEEEEEECSSSSE-EEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCcEEEEEcCCCCCEEEEEEcCCCCE-EEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            888888889999999999999999999874 9999999999999999988888899999999999999999999999999


Q ss_pred             CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE
Q 007283          210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC  289 (609)
Q Consensus       210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      +.+++||..+++.+..+.  ..+...+..++|+|++++|++++.|+.|++||+..   ++....+...... ........
T Consensus       171 ~~i~~wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~---~~~~~~~~~~~~~-~~~~~~~~  244 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLI--DDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSK---GKCLKTYTGHKNE-KYCIFANF  244 (312)
T ss_dssp             SCEEEEETTTCCEEEEEC--CSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTT---TEEEEEECSSCCS-SSCCCEEE
T ss_pred             CcEEEEECCCCceeeEEe--ccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCC---CcEEEEEEecCCc-eEEEEEEE
Confidence            999999999888766553  35677899999999999999999999999999873   4455554322211 11111122


Q ss_pred             E-EcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe--cCCcEEEEec
Q 007283          290 L-WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS--YDGLIVKWIQ  354 (609)
Q Consensus       290 ~-~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s--~dg~i~~W~~  354 (609)
                      . .++.++++++.||.|++|++... .....+.+|...|.++++++. +.++++++  .|++|++|..
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~~~h~~~v~~~~~~p~-~~~l~s~~~~~d~~i~~W~~  310 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTK-EIVQKLQGHTDVVISTACHPT-ENIIASAALENDKTIKLWKS  310 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTC-CEEEEECCCSSCEEEEEECSS-SSEEEEEECTTTCCEEEEEC
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCc-hhhhhhhccCCcEEEEeecCc-CCceEEEEccCCccEEEecC
Confidence            2 23557899999999999998653 334568899999999998754 46888886  6999999964

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.8e-36  Score=294.05  Aligned_cols=291  Identities=23%  Similarity=0.389  Sum_probs=239.7

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      ...+.+|...|.+++|+|++. .+++|+.|+.+++|+...++....+.+|...|.+++|+|++++|++++.|+.+++||.
T Consensus        16 ~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           16 KFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             EEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            346789999999999999988 4999999999999999888888889999999999999999999999999999999999


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEE
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLV  297 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (609)
                      .+++.+..+   .+|...|.+++|+|++++|++++.|++|++||+..   ++..                          
T Consensus        95 ~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~---~~~~--------------------------  142 (312)
T 4ery_A           95 SSGKCLKTL---KGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT---GKCL--------------------------  142 (312)
T ss_dssp             TTCCEEEEE---ECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT---CCEE--------------------------
T ss_pred             CCCcEEEEE---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---CEEE--------------------------
Confidence            998877666   37899999999999999999999999999999862   2111                          


Q ss_pred             EEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283          298 IVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE  377 (609)
Q Consensus       298 ~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~  377 (609)
                                          ..+..|...|.++++++ ++.++++++.||.|++|+...+..          +.      
T Consensus       143 --------------------~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~----------~~------  185 (312)
T 4ery_A          143 --------------------KTLPAHSDPVSAVHFNR-DGSLIVSSSYDGLCRIWDTASGQC----------LK------  185 (312)
T ss_dssp             --------------------EEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTCCE----------EE------
T ss_pred             --------------------EEecCCCCcEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCce----------ee------
Confidence                                12345777888888864 557999999999999997643210          00      


Q ss_pred             CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283          378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP  457 (609)
Q Consensus       378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  457 (609)
                                   .+                                                  ......++..++++|
T Consensus       186 -------------~~--------------------------------------------------~~~~~~~~~~~~~~~  202 (312)
T 4ery_A          186 -------------TL--------------------------------------------------IDDDNPPVSFVKFSP  202 (312)
T ss_dssp             -------------EE--------------------------------------------------CCSSCCCEEEEEECT
T ss_pred             -------------EE--------------------------------------------------eccCCCceEEEEECC
Confidence                         00                                                  000113467789999


Q ss_pred             CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCce---EEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCC
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAV---SVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT  534 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i---~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~  534 (609)
                      +++++++++.|+.|++||+..+..  ...+.+|...+   ......+++.++++|+.|+.|++||+.+.+. +..+.+|.
T Consensus       203 ~~~~l~~~~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~  279 (312)
T 4ery_A          203 NGKYILAATLDNTLKLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEI-VQKLQGHT  279 (312)
T ss_dssp             TSSEEEEEETTTEEEEEETTTTEE--EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCE-EEEECCCS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcE--EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchh-hhhhhccC
Confidence            999999999999999999987764  34566776543   3333457899999999999999999887654 45678899


Q ss_pred             CceEEEEECCCCcEEEEEe--CCCeEEEEEcC
Q 007283          535 ARINCLAWSPNNSMVATGS--LDTCVIIYEID  564 (609)
Q Consensus       535 ~~i~~l~~s~d~~~l~s~s--~D~~v~vw~~~  564 (609)
                      ..|.+++|+|++++|++++  .|++|++|+.+
T Consensus       280 ~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          280 DVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             CcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            9999999999999999997  69999999864

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-37  Score=320.30  Aligned_cols=350  Identities=10%  Similarity=0.006  Sum_probs=232.8

Q ss_pred             cccceeEEEECCCC---------CEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCe
Q 007283           99 LSGRIDDLQWSPDG---------LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL  169 (609)
Q Consensus        99 ~~~~v~~~~~spdg---------~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~  169 (609)
                      +.+.|.+++|+|++         ++|++......                   .       -..+|++. .+++++.|++
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~-------------------~-------~~~~~~~~-~laS~s~D~t  184 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYM-------------------D-------EPLNEHLE-MFDKEKHSSC  184 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC---------------------------------------------CEE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEeccc-------------------C-------Cccchhhh-hhccCCCCce
Confidence            46789999999986         45555432110                   0       01357776 4899999999


Q ss_pred             EEEEeCCCCcee----eeccCcccceEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCcccc--------ccCcCCC
Q 007283          170 VNFYEGPPFKFK----LSHRGHSNFVNCVRFSPD------GSKFISVSSDKKGIIYDGKTADKIG--------ELSPEDG  231 (609)
Q Consensus       170 i~~~~~~~~~~~----~~~~~h~~~v~~l~~s~d------g~~l~s~~~d~~i~iwd~~~~~~~~--------~~~~~~~  231 (609)
                      |++|+..+.+..    ..+.+|...|.+++|+|+      +.+||+++.|++|++||+..++...        ......+
T Consensus       185 I~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~  264 (524)
T 2j04_B          185 IQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSL  264 (524)
T ss_dssp             EEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECC
T ss_pred             EEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEc
Confidence            999997665532    335677889999999997      5799999999999999997764320        0011247


Q ss_pred             CccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCC
Q 007283          232 HKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAN  311 (609)
Q Consensus       232 h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~  311 (609)
                      |.+.|++++|+|++ .|++|+.||+|++||++...                                             
T Consensus       265 h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~---------------------------------------------  298 (524)
T 2j04_B          265 ADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPE---------------------------------------------  298 (524)
T ss_dssp             TTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCS---------------------------------------------
T ss_pred             CCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCC---------------------------------------------
Confidence            88999999999865 89999999999999986210                                             


Q ss_pred             CCCCCceeeeCCCCCeEEEE-EecCCC-CEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceE
Q 007283          312 DLEKSPLQLSGHMKNVTALT-VLNIDP-KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKI  389 (609)
Q Consensus       312 ~~~~~~~~~~~h~~~v~~~~-~~~~~~-~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  389 (609)
                         .....+.+|...|.+++ .++.++ .+++|++.|++|++|+.........          +        ..      
T Consensus       299 ---~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~----------~--------~~------  351 (524)
T 2j04_B          299 ---VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKT----------T--------VS------  351 (524)
T ss_dssp             ---SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCE----------E--------EE------
T ss_pred             ---CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccc----------c--------cc------
Confidence               01123567999999995 344554 7999999999999998643210000          0        00      


Q ss_pred             EEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCC
Q 007283          390 WRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDG  469 (609)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg  469 (609)
                                                                           . .....+.+++++|+++.+++++.|+
T Consensus       352 -----------------------------------------------------~-~~~~~v~~v~fsp~~~~l~s~~~d~  377 (524)
T 2j04_B          352 -----------------------------------------------------R-FRGSNLVPVVYCPQIYSYIYSDGAS  377 (524)
T ss_dssp             -----------------------------------------------------E-CSCCSCCCEEEETTTTEEEEECSSS
T ss_pred             -----------------------------------------------------c-cccCcccceEeCCCcCeEEEeCCCC
Confidence                                                                 0 0001256789999999999999999


Q ss_pred             cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE-eee--cCCCCceEEEEECCCC
Q 007283          470 KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL-KNM--LYHTARINCLAWSPNN  546 (609)
Q Consensus       470 ~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~-~~~--~~h~~~i~~l~~s~d~  546 (609)
                      +|++||++....  ...+.+|.+.|++|+|||+|.++++|+.|++|++||+....... +..  ..+...|++++|+|++
T Consensus       378 tv~lwd~~~~~~--~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g  455 (524)
T 2j04_B          378 SLRAVPSRAAFA--VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKD  455 (524)
T ss_dssp             EEEEEETTCTTC--CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSS
T ss_pred             cEEEEECccccc--ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCC
Confidence            999999987654  34577899999999999999999999999999999975532110 000  0122257899999999


Q ss_pred             cEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CC---CeEEEEeCCCcEEEEEccC
Q 007283          547 SMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DE---HSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       547 ~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~---~~l~s~s~D~~i~~W~~~~  608 (609)
                      +.+ ....+  +.+|+....+ .....+.+|...|++|+|+ ++   ..+++|+.||.|+||++.-
T Consensus       456 ~~~-~~~~~--~~~~~~~~~g-~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          456 DKY-RIDSS--YEVYPLTVND-VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CEE-EECCC--CCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred             CeE-EccCC--ceecccccCC-cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence            855 23222  3343322111 2344557899999999999 43   3799999999999999864

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.5e-35  Score=291.57  Aligned_cols=206  Identities=25%  Similarity=0.384  Sum_probs=177.9

Q ss_pred             cccccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEcCCCCc----eeeEEEeecccceeEEEECCCCCEEEEEECCCCcc
Q 007283           51 SIYGEHAYPATVARFSPN-GEWIASADVSGTVRIWGAHNDH----VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS  125 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~-g~~las~~~d~~i~vWd~~~~~----~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~  125 (609)
                      .+|.||++.|++++|+|+ +++||||+.|++|+|||+.+.+    .....+.+|...|.+++|+|||++|++++.+.   
T Consensus        32 ~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~---  108 (340)
T 4aow_A           32 GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG---  108 (340)
T ss_dssp             EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS---
T ss_pred             EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccc---
Confidence            458899999999999998 6899999999999999987643    23456788999999999999999999987544   


Q ss_pred             eEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-eeeeccCcccceEEEEEcCCC--CE
Q 007283          126 LVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-FKLSHRGHSNFVNCVRFSPDG--SK  202 (609)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-~~~~~~~h~~~v~~l~~s~dg--~~  202 (609)
                      .+++|.............+...+..+.++|++.. +++|+.|+.+++|+..... ......+|...+.+++|++++  ..
T Consensus       109 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  187 (340)
T 4aow_A          109 TLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQ-IVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPI  187 (340)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEECTTSSC-EEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCE
T ss_pred             cceEEeecccceeeeecCCCCceeEEEEeecCcc-ceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcE
Confidence            4677777777777777888889999999999875 8999999999999976543 445567899999999999875  47


Q ss_pred             EEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          203 FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       203 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +++++.|+.+++||.++++.+..+   .+|.+.|++++|+|++++|++++.|++|++||+.
T Consensus       188 ~~s~~~d~~i~i~d~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~  245 (340)
T 4aow_A          188 IVSCGWDKLVKVWNLANCKLKTNH---IGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLN  245 (340)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred             EEEEcCCCEEEEEECCCCceeeEe---cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence            889999999999999998877665   3799999999999999999999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-37  Score=317.66  Aligned_cols=199  Identities=13%  Similarity=0.236  Sum_probs=152.1

Q ss_pred             eecCCCCeEEEeCCCEEEEEeCCCCcccccc-ccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCC---Ccee--eEE
Q 007283           23 SGHPKSNSILYTNGRSVIILDLSNPLQVSIY-GEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHN---DHVL--KKE   95 (609)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~-~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~---~~~~--~~~   95 (609)
                      .++|+++.++...     .|+. +++.+..+ .+|.+.|++++|+| +|++||+|+.||+|+|||+.+   +...  ...
T Consensus        34 ~f~~~~~~~~~~~-----~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~  107 (437)
T 3gre_A           34 EFGPIQEIVRSPN-----MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLT  107 (437)
T ss_dssp             GGCCCCCCCCCCC-----GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEE
T ss_pred             hcCCccccccccc-----cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeee
Confidence            4678887666543     3664 34555556 89999999999999 999999999999999999876   3311  122


Q ss_pred             EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC---CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           96 FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD---SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        96 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      + .|...|.+++|+|++.+|++++.+.   .+++|+.+   .+.....+.+|  .+..+.|+|++               
T Consensus       108 ~-~h~~~v~~~~~~~~~~~l~s~s~dg---~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~---------------  166 (437)
T 3gre_A          108 Y-DCSSTVTQITMIPNFDAFAVSSKDG---QIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG---------------  166 (437)
T ss_dssp             E-ECSSCEEEEEECTTSSEEEEEETTS---EEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS---------------
T ss_pred             c-cCCCCEEEEEEeCCCCEEEEEeCCC---EEEEEEeccccCCceeeccccc--eeEEEEccCcc---------------
Confidence            2 4889999999999999999988644   46777663   34444444444  45555554432               


Q ss_pred             EeCCCCceeeeccCcccceEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEE
Q 007283          173 YEGPPFKFKLSHRGHSNFVNCVR--FSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT  250 (609)
Q Consensus       173 ~~~~~~~~~~~~~~h~~~v~~l~--~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s  250 (609)
                                    +...+.++.  ++|++.+|++++.|+.|++||.++++.+..+.. ..|.+.|++++|+|++++|++
T Consensus       167 --------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~~l~s  231 (437)
T 3gre_A          167 --------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIEN-SPRHGAVSSICIDEECCVLIL  231 (437)
T ss_dssp             --------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEEC-CGGGCCEEEEEECTTSCEEEE
T ss_pred             --------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEcc-CCCCCceEEEEECCCCCEEEE
Confidence                          334466666  678999999999999999999999888776641 128899999999999999999


Q ss_pred             EeCCCcEEEeecc
Q 007283          251 ASADKSAKVWDIS  263 (609)
Q Consensus       251 ~s~d~~i~iwd~~  263 (609)
                      ++.|++|++||++
T Consensus       232 ~~~dg~i~iwd~~  244 (437)
T 3gre_A          232 GTTRGIIDIWDIR  244 (437)
T ss_dssp             EETTSCEEEEETT
T ss_pred             EcCCCeEEEEEcC
Confidence            9999999999986

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.3e-35  Score=303.87  Aligned_cols=345  Identities=9%  Similarity=0.098  Sum_probs=260.4

Q ss_pred             EEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283           21 LISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      .++++|+|+.|++.. ++.+.+|++.+.+....+..| ..+....|+|+|++||+++.|++|+|||+.+++.. .     
T Consensus        61 ~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~-----  133 (420)
T 3vl1_A           61 GNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQR-E-----  133 (420)
T ss_dssp             TCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCEEE-E-----
T ss_pred             ceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCccee-e-----
Confidence            678999999988774 689999999888877777766 44556679999999999999999999998765321 1     


Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK  179 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~  179 (609)
                                                              .+.+|...|.+++|+|++. .+++|+.|+.+++||....+
T Consensus       134 ----------------------------------------~~~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~  172 (420)
T 3vl1_A          134 ----------------------------------------IDQAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGS  172 (420)
T ss_dssp             ----------------------------------------ETTSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCC
T ss_pred             ----------------------------------------ecccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCc
Confidence                                                    1346677777888888776 48889999999999999888


Q ss_pred             eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEE
Q 007283          180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKV  259 (609)
Q Consensus       180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~i  259 (609)
                      ....+.+|...|.+++|+|++++|++++.|+.+++||.++++.+..+.....|...|.+++|.|.+...          +
T Consensus       173 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------~  242 (420)
T 3vl1_A          173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ----------L  242 (420)
T ss_dssp             CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS----------C
T ss_pred             CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce----------e
Confidence            888889999999999999999999999999999999999998887776555678889999988765432          1


Q ss_pred             eecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCE
Q 007283          260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKV  339 (609)
Q Consensus       260 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  339 (609)
                      .....   .            .+..+                                             ++ ..++.+
T Consensus       243 ~~~~~---~------------~v~~~---------------------------------------------~~-s~~~~~  261 (420)
T 3vl1_A          243 HEIST---S------------KKNNL---------------------------------------------EF-GTYGKY  261 (420)
T ss_dssp             GGGCC---C------------CCCTT---------------------------------------------CS-SCTTEE
T ss_pred             eeccc---C------------cccce---------------------------------------------EE-cCCCCE
Confidence            11100   0            00000                                             00 123457


Q ss_pred             EEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeecc
Q 007283          340 ILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALH  419 (609)
Q Consensus       340 ~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (609)
                      +++++.||.|++|+......          +                   ..+                           
T Consensus       262 l~~~~~dg~i~i~d~~~~~~----------~-------------------~~~---------------------------  285 (420)
T 3vl1_A          262 VIAGHVSGVITVHNVFSKEQ----------T-------------------IQL---------------------------  285 (420)
T ss_dssp             EEEEETTSCEEEEETTTCCE----------E-------------------EEE---------------------------
T ss_pred             EEEEcCCCeEEEEECCCCce----------e-------------------EEc---------------------------
Confidence            78888888888887543210          0                   000                           


Q ss_pred             CCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC-EEEEEeCCCcEEEEEecCCeeeeeEEEec-CCCceEEE
Q 007283          420 YPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS-EAIIGSQDGKLRVYSIRGDTLTEEAVLEK-HRGAVSVI  497 (609)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~-~l~~gs~dg~i~iw~~~~~~~~~~~~~~~-h~~~i~~v  497 (609)
                                             ...+..++.+++++|++. ++++|+.||.|++||++.+... ...+.. |...|.++
T Consensus       286 -----------------------~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~  341 (420)
T 3vl1_A          286 -----------------------PSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECP-VGEFLINEGTPINNV  341 (420)
T ss_dssp             -----------------------CCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSC-SEEEEESTTSCEEEE
T ss_pred             -----------------------ccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc-hhhhhccCCCCceEE
Confidence                                   001124578899999999 9999999999999999865432 234444 77788888


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceE--------EeeecCCCCceEEEEECCCCc---EEEEEeCCCeEEEEEcCC
Q 007283          498 RYSPDVSMFASGDVNREAIVWDRVSREVK--------LKNMLYHTARINCLAWSPNNS---MVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       498 ~~s~~~~~l~s~s~d~~v~iwd~~~~~~~--------~~~~~~h~~~i~~l~~s~d~~---~l~s~s~D~~v~vw~~~~  565 (609)
                      .+ |++.++++++.|+++++||+...+..        ...+..|...|.+++|+|+++   .|++.+.+|.+.+|++..
T Consensus       342 ~~-~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          342 YF-AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             EE-ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             Ee-CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            55 57899999999999999997663211        123557889999999999999   777788899999999853

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2.5e-35  Score=292.53  Aligned_cols=294  Identities=22%  Similarity=0.323  Sum_probs=230.6

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-----eeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-----FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-----~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      ..+++||.+.|++++|+|+++.+|+||+.|++|++||....+     ....+.+|...|.+++|+|+|++|++++.|+.+
T Consensus        31 ~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i  110 (340)
T 4aow_A           31 RGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTL  110 (340)
T ss_dssp             EEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccc
Confidence            457899999999999999876679999999999999965432     345678999999999999999999999999999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      ++|+...........   .+...+..+.++|++.+|++++.|+.+++||+...    ....                   
T Consensus       111 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~----~~~~-------------------  164 (340)
T 4aow_A          111 RLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGV----CKYT-------------------  164 (340)
T ss_dssp             EEEETTTTEEEEEEE---CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSC----EEEE-------------------
T ss_pred             eEEeecccceeeeec---CCCCceeEEEEeecCccceeecCCCeEEEEEeCCC----ceEE-------------------
Confidence            999988876655442   46778899999999999999999999999997521    1100                   


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC-CCCEEEEEecCCcEEEEecCccccceecccccccee
Q 007283          293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI-DPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK  371 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~  371 (609)
                                               ....+|...+..+++... ...++++++.|+.|++|+........          
T Consensus       165 -------------------------~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~----------  209 (340)
T 4aow_A          165 -------------------------VQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKT----------  209 (340)
T ss_dssp             -------------------------ECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEE----------
T ss_pred             -------------------------EEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceee----------
Confidence                                     112357777888887643 34578999999999999764321000          


Q ss_pred             EeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCcee
Q 007283          372 CFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVT  451 (609)
Q Consensus       372 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (609)
                                                                                            ....+..++.
T Consensus       210 ----------------------------------------------------------------------~~~~h~~~v~  219 (340)
T 4aow_A          210 ----------------------------------------------------------------------NHIGHTGYLN  219 (340)
T ss_dssp             ----------------------------------------------------------------------EECCCSSCEE
T ss_pred             ----------------------------------------------------------------------EecCCCCcEE
Confidence                                                                                  0001234688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe---
Q 007283          452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK---  528 (609)
Q Consensus       452 ~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~---  528 (609)
                      +++++|+++++++|+.||.|++||+......  ..+. +...|.++.|+|++.+++ ++.|+.+++||+.+......   
T Consensus       220 ~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~--~~~~-~~~~v~~~~~~~~~~~~~-~~~d~~i~iwd~~~~~~~~~~~~  295 (340)
T 4aow_A          220 TVTVSPDGSLCASGGKDGQAMLWDLNEGKHL--YTLD-GGDIINALCFSPNRYWLC-AATGPSIKIWDLEGKIIVDELKQ  295 (340)
T ss_dssp             EEEECTTSSEEEEEETTCEEEEEETTTTEEE--EEEE-CSSCEEEEEECSSSSEEE-EEETTEEEEEETTTTEEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEeccCcee--eeec-CCceEEeeecCCCCceee-ccCCCEEEEEECCCCeEEEeccc
Confidence            9999999999999999999999999876543  3333 456899999999987655 56799999999876543211   


Q ss_pred             -----eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          529 -----NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       529 -----~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                           ....|...|++++|+||+++|++|+.||+|+|||+.++
T Consensus       296 ~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          296 EVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             C-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             cceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence                 13468899999999999999999999999999998764

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.6e-36  Score=302.07  Aligned_cols=297  Identities=13%  Similarity=0.083  Sum_probs=206.7

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCC-------cEEEEcCCCCcee-----e----EEEeecccceeEEEECCCCCEEEEEEC
Q 007283           57 AYPATVARFSPNGEWIASADVSG-------TVRIWGAHNDHVL-----K----KEFRVLSGRIDDLQWSPDGLRIVACGD  120 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~-------~i~vWd~~~~~~~-----~----~~~~~~~~~v~~~~~spdg~~l~~~~~  120 (609)
                      ..||++++|+|||++||+|+.|.       .|+||++......     .    ..+..+...|.+++|  ++..+++..+
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~--~~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDA--SKGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEE--ETTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEe--CCCEEEEEEC
Confidence            45899999999999999987654       4999998754310     0    112233334444433  3333333221


Q ss_pred             CCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee---------eeccCcccce
Q 007283          121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK---------LSHRGHSNFV  191 (609)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~---------~~~~~h~~~v  191 (609)
                      ..                                   ...+++++.|..+++|+.......         .....+..++
T Consensus        92 ~~-----------------------------------~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (365)
T 4h5i_A           92 EN-----------------------------------STKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYT  136 (365)
T ss_dssp             CC-----------------------------------HHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCE
T ss_pred             CC-----------------------------------ccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCE
Confidence            10                                   112344555666777764332111         1123455678


Q ss_pred             EEEEEcCCCCEEEEEe--CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCc
Q 007283          192 NCVRFSPDGSKFISVS--SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK  269 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~  269 (609)
                      .+++|+|||+++++|+  .|++|+|||.++++.+..+    .|.+.|.+++|+|||++|++++.+ .+++|+...   ++
T Consensus       137 ~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~----~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~---~~  208 (365)
T 4h5i_A          137 KLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI----ETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVT---GS  208 (365)
T ss_dssp             EEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE----ECSSCCCEEEECTTSSEEEEECSS-CEEEEETTT---CC
T ss_pred             EEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe----CCCCceEEEEEccCCceEEeccce-eEEEEEecc---Cc
Confidence            9999999999887655  6899999999999887766    477889999999999999999855 556665431   11


Q ss_pred             eEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcE
Q 007283          270 LKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLI  349 (609)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i  349 (609)
                      ....                                            ....+|..                        
T Consensus       209 ~~~~--------------------------------------------~~~~~~~~------------------------  220 (365)
T 4h5i_A          209 CIAR--------------------------------------------KTDFDKNW------------------------  220 (365)
T ss_dssp             EEEE--------------------------------------------ECCCCTTE------------------------
T ss_pred             ceee--------------------------------------------eecCCCCC------------------------
Confidence            0000                                            00001111                        


Q ss_pred             EEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEec
Q 007283          350 VKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTD  429 (609)
Q Consensus       350 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (609)
                                                                                                      
T Consensus       221 --------------------------------------------------------------------------------  220 (365)
T 4h5i_A          221 --------------------------------------------------------------------------------  220 (365)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCC----cEEEEEecCCeee--eeEEEecCCCceEEEEECCCC
Q 007283          430 SGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDG----KLRVYSIRGDTLT--EEAVLEKHRGAVSVIRYSPDV  503 (609)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg----~i~iw~~~~~~~~--~~~~~~~h~~~i~~v~~s~~~  503 (609)
                                         .+.+++|+|+++.+++++.|+    .+++|++......  ....+.+|...|++++|||||
T Consensus       221 -------------------~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg  281 (365)
T 4h5i_A          221 -------------------SLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKG  281 (365)
T ss_dssp             -------------------EEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTS
T ss_pred             -------------------CEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCC
Confidence                               245566777888888877776    5777877655432  234577899999999999999


Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          504 SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       504 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      ++||+|+.|++|+|||+.+.+.....+.+|...|++|+|||||++|||||.|++|+||+++.
T Consensus       282 ~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          282 ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999999999999887654444578999999999999999999999999999999964

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.2e-34  Score=300.87  Aligned_cols=347  Identities=18%  Similarity=0.262  Sum_probs=264.8

Q ss_pred             eeEEEecCCccE-EEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          137 NVGEFDGHSRRV-LSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       137 ~~~~~~~h~~~v-~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      ....+.+|...| .++.++  +. .+++|+.|+.|++||..+++....+.+|...|.+++|+|++ .|++|+.|+++++|
T Consensus       113 ~~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          113 QRTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             EEEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             ceEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            345788998875 555554  44 59999999999999999999999999999999999999998 89999999999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEEC--CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcC
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWS--PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN  293 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~s--pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (609)
                      |..+++.+..+   .+|.+.|.+++|+  |++.+|++++.|++|++||+.....   .........    .         
T Consensus       189 d~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~---~~~~~~~~~----~---------  249 (464)
T 3v7d_B          189 DIKKGCCTHVF---EGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS---VPDHGEEHD----Y---------  249 (464)
T ss_dssp             ETTTTEEEEEE---CCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCC---C------CC----S---------
T ss_pred             ECCCCcEEEEE---CCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcc---cccccccCC----c---------
Confidence            99999877766   3799999999998  5789999999999999999874221   111100000    0         


Q ss_pred             CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEe
Q 007283          294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCF  373 (609)
Q Consensus       294 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~  373 (609)
                                ................+.+|...|.++..   ++..+++++.|+.|++|+......              
T Consensus       250 ----------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~l~~~~~d~~i~vwd~~~~~~--------------  302 (464)
T 3v7d_B          250 ----------PLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMKC--------------  302 (464)
T ss_dssp             ----------SEEESCGGGCTTEEEEECCCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEE--------------
T ss_pred             ----------ceEeeccCCCeEEEEEccCccceEEEEcC---CCCEEEEEeCCCeEEEEECCCCcE--------------
Confidence                      00000000011112346788888888754   347999999999999997643210              


Q ss_pred             eeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEE
Q 007283          374 AAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTAS  453 (609)
Q Consensus       374 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (609)
                                     +..                                                   ...+...+.++
T Consensus       303 ---------------~~~---------------------------------------------------~~~~~~~v~~~  316 (464)
T 3v7d_B          303 ---------------LYI---------------------------------------------------LSGHTDRIYST  316 (464)
T ss_dssp             ---------------EEE---------------------------------------------------ECCCSSCEEEE
T ss_pred             ---------------EEE---------------------------------------------------ecCCCCCEEEE
Confidence                           000                                                   00122457889


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCC
Q 007283          454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYH  533 (609)
Q Consensus       454 ~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h  533 (609)
                      +++|+++++++|+.||.|++||+.++..  ...+.+|...|.+++|+  +.++++++.|+++++||+.+......  ..|
T Consensus       317 ~~~~~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~--~~~  390 (464)
T 3v7d_B          317 IYDHERKRCISASMDTTIRIWDLENGEL--MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--YHH  390 (464)
T ss_dssp             EEETTTTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE--EEC
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECCCCcE--EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee--ecC
Confidence            9999999999999999999999987764  45678999999999997  58999999999999999987654432  246


Q ss_pred             CCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          534 TARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       534 ~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ...+..++|+|++++|++|+ |+.|++||+..+. .......+|.+.|++++|+++..+++++.|+.+.+|-++
T Consensus       391 ~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~-~~~~~~~~~~~~v~~v~~~~~~l~~~~~~~g~~~i~~ld  462 (464)
T 3v7d_B          391 TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGK-LVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD  462 (464)
T ss_dssp             TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTCC-EEESCTTTTCSEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred             CCCccEEEEEeCCCEEEEec-CCeEEEEECCCCc-EEehhhccCCCcEEEEEecCCEEEEEEEeCCeEEEEEee
Confidence            77888999999999999999 9999999998653 222234678999999999866677778888888777654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-37  Score=315.15  Aligned_cols=318  Identities=10%  Similarity=0.099  Sum_probs=240.8

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC
Q 007283           57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT  136 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  136 (609)
                      ++.|.+++|||||++|||++.|++||  |....+.    +.+|...|..++|+|||      .+       +.|.++.+.
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~----l~gh~~~v~~V~FsPdg------~~-------~~~~~~~~~   75 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKD----INCNSKNLFHVKEFPLE------FE-------NKLDFELAQ   75 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSC----CSSBGGGTEEEEEECCC------CC-------CTTTTSCCC
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--cccccce----ecCCCccEEEEEECCCC------Cc-------ceEEEEeCC
Confidence            46799999999999999999999999  7555432    36899999999999999      11       123444333


Q ss_pred             eeEEEe-cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCccc-----ceEEEEEcCCCCEEEEEeCCC
Q 007283          137 NVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSN-----FVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       137 ~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~-----~v~~l~~s~dg~~l~s~~~d~  210 (609)
                      ....+. .|...|.+++|+|+|.. +|+++.|+.+++|+...  +...+. |..     .|.+++|||||++||+|+.||
T Consensus        76 ~~~~~~~~~~~~V~~vawSPdG~~-LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DG  151 (588)
T 2j04_A           76 QNGLLNSQPVCYPRVCKPSPIDDW-MAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDG  151 (588)
T ss_dssp             SSCSSTTSCSCCEEEEEECSSSSC-EEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTS
T ss_pred             CceEeecCCCCcEEEEEECCCCCE-EEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCC
Confidence            222233 56888999999999985 99999999999999654  444445 554     599999999999999999999


Q ss_pred             cEEEEeCCCCcc-------ccccC-cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCc
Q 007283          211 KGIIYDGKTADK-------IGELS-PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV  282 (609)
Q Consensus       211 ~i~iwd~~~~~~-------~~~~~-~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  282 (609)
                      +|+|||..+++.       +.++. ...+|.+.|.+++|+|||  +++++.|+++++||+....   ..           
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~---~~-----------  215 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS---HQ-----------  215 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS---SC-----------
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc---cc-----------
Confidence            999999988753       22321 124788999999999999  8888999999999986321   00           


Q ss_pred             cceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceee-eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccce
Q 007283          283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQL-SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK  361 (609)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~  361 (609)
                                                      .....+ .+|...|.+++|+   ++.+++++ |++|++|+...+....
T Consensus       216 --------------------------------~~~~tL~~~h~~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~  259 (588)
T 2j04_A          216 --------------------------------PVSRMIQNASRRKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISS  259 (588)
T ss_dssp             --------------------------------CCEEEEECCCSSCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEE
T ss_pred             --------------------------------cceeeecccccCcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEE
Confidence                                            001123 3677889999998   26888887 6999999764321000


Q ss_pred             eccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeee
Q 007283          362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVV  441 (609)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (609)
                                                                                                      
T Consensus       260 --------------------------------------------------------------------------------  259 (588)
T 2j04_A          260 --------------------------------------------------------------------------------  259 (588)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeccCCceeEEEE--cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 007283          442 STINLRFPVTASAI--APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD  519 (609)
Q Consensus       442 ~~~~~~~~~~~~~~--sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd  519 (609)
                      ....+...+..+++  +||+..+++++.||+ ++|..+                  .++|+||+..+++.  |+++++|+
T Consensus       260 ~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d------------------~~~~spd~~l~a~~--d~~v~lW~  318 (588)
T 2j04_A          260 LKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED------------------ELHVTADNIIAPYL--EKKFKKWS  318 (588)
T ss_dssp             EECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS------------------SEEEECCCSSHHHH--HHHHHHTT
T ss_pred             EEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec------------------cEEECCCceEEEEc--CCEEEEEE
Confidence            00012245788899  999999999999999 999764                  15689999999885  99999998


Q ss_pred             ccCCceEEeeecCCCCceEEEEECCCCcEEEEEe
Q 007283          520 RVSREVKLKNMLYHTARINCLAWSPNNSMVATGS  553 (609)
Q Consensus       520 ~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s  553 (609)
                      ...+..  . ...++..|.+++|||||+.+|+++
T Consensus       319 ~~g~~l--~-~~~~~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          319 TIWNEF--N-NYETTLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             TTTTSS--S-SSCCEEEEEEEEECTTSSEEEEEE
T ss_pred             CCCCce--e-eeccceEEEEEEECCCCCEEEEEE
Confidence            765542  2 223477799999999999999885

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.7e-34  Score=285.46  Aligned_cols=300  Identities=17%  Similarity=0.234  Sum_probs=246.2

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                      ...+.+|...|.+++|+|++.. +++|+.|+.+++|+..+++....+.+|...|.+++|+|++++|++++.|+.+++||.
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDL-LFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCE-EEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             cEEEEEeeceEEEEEEcCCCCE-EEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            3467899999999999999874 999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC-----CcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-----KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      .+++.+..+.    |...|.+++|+|++++|++++.+     +.|++||+...........                   
T Consensus       104 ~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~-------------------  160 (369)
T 3zwl_B          104 SNGQCVATWK----SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTK-------------------  160 (369)
T ss_dssp             TTCCEEEEEE----CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEE-------------------
T ss_pred             CCCcEEEEee----cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecc-------------------
Confidence            9998877663    77889999999999999999998     9999999753110000000                   


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283          293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC  372 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~  372 (609)
                                                   .....+..+.                                         
T Consensus       161 -----------------------------~~~~~~~~~~-----------------------------------------  170 (369)
T 3zwl_B          161 -----------------------------VSEEPIHKII-----------------------------------------  170 (369)
T ss_dssp             -----------------------------ECSSCSEEEE-----------------------------------------
T ss_pred             -----------------------------cccceeeecc-----------------------------------------
Confidence                                         0000000000                                         


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeE
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTA  452 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (609)
                                                                                            .......+.+
T Consensus       171 ----------------------------------------------------------------------~~~~~~~~~~  180 (369)
T 3zwl_B          171 ----------------------------------------------------------------------THEGLDAATV  180 (369)
T ss_dssp             ----------------------------------------------------------------------CCTTCCCEEE
T ss_pred             ----------------------------------------------------------------------CCcCccceeE
Confidence                                                                                  0000014678


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEecC-CeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeec
Q 007283          453 SAIAPDGSEAIIGSQDGKLRVYSIRG-DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML  531 (609)
Q Consensus       453 ~~~sp~g~~l~~gs~dg~i~iw~~~~-~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~  531 (609)
                      ++++|+++++++|+.||.|++||+.. ...  ...+..|...|.+++|+|++.++++++.|+.+++||+.+.+.... + 
T Consensus       181 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~-  256 (369)
T 3zwl_B          181 AGWSTKGKYIIAGHKDGKISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK-Y-  256 (369)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE-E-
T ss_pred             EEEcCCCCEEEEEcCCCEEEEEECCCCcEe--EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee-e-
Confidence            88999999999999999999999986 333  456788999999999999999999999999999999887655332 2 


Q ss_pred             CCCCceEEEEECCCCcEEEEEeCCC--------------eEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEe
Q 007283          532 YHTARINCLAWSPNNSMVATGSLDT--------------CVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSG  596 (609)
Q Consensus       532 ~h~~~i~~l~~s~d~~~l~s~s~D~--------------~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s  596 (609)
                      .+...+.+++|+|+++++++++.++              .|++||.....  ......+|...|++++|+ ++++|++++
T Consensus       257 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~--~~~~~~~~~~~v~~~~~s~~~~~l~s~~  334 (369)
T 3zwl_B          257 ETDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEE--EIGRVQGHFGPLNTVAISPQGTSYASGG  334 (369)
T ss_dssp             ECSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCC--EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             cCCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCc--chhheecccCcEEEEEECCCCCEEEEEc
Confidence            3788999999999999999999998              89999987643  345557899999999999 778999999


Q ss_pred             CCCcEEEEEcc
Q 007283          597 EDACVRVWRLT  607 (609)
Q Consensus       597 ~D~~i~~W~~~  607 (609)
                      .|+.|++|++.
T Consensus       335 ~dg~v~iw~~~  345 (369)
T 3zwl_B          335 EDGFIRLHHFE  345 (369)
T ss_dssp             TTSEEEEEEEC
T ss_pred             CCCeEEEEECc
Confidence            99999999985

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.9e-34  Score=294.49  Aligned_cols=321  Identities=19%  Similarity=0.331  Sum_probs=242.0

Q ss_pred             cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      ....+.+|.+.|.. +++++|++||+|+.||+|++||+.+++. ...+..|.+.|.+++|+  +..|++++.+.   .++
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~--~~~l~s~~~dg---~i~  182 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-LRTLVGHTGGVWSSQMR--DNIIISGSTDR---TLK  182 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-EEECCCCSSCEEEEEEE--TTEEEEEETTS---CEE
T ss_pred             eeEEecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcE-EEEEcCCCCCEEEEEec--CCEEEEEeCCC---eEE
Confidence            44567899987643 3666799999999999999999988764 34577888888888887  44677666443   467


Q ss_pred             EEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC
Q 007283          129 AFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                      +|+++.+..+..+.+|...|.+++|+++   .+++|+.|+.+++||..+++....+.+|...|.++.|  +++.|++++.
T Consensus       183 vwd~~~~~~~~~~~~h~~~v~~~~~~~~---~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~  257 (445)
T 2ovr_B          183 VWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY  257 (445)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET
T ss_pred             EEECCcCcEEEEECCCCCcEEEEEecCC---EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC
Confidence            7777777778888888888888888642   4888888888888888888777778888888888888  6778888888


Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      |+.+++||..+++.+..+   .+|...|.++.|  ++.++++++.|+.|++||+..   ++...                
T Consensus       258 dg~i~iwd~~~~~~~~~~---~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~---~~~~~----------------  313 (445)
T 2ovr_B          258 DFMVKVWDPETETCLHTL---QGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVET---GNCIH----------------  313 (445)
T ss_dssp             TSCEEEEEGGGTEEEEEE---CCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTT---CCEEE----------------
T ss_pred             CCEEEEEECCCCcEeEEe---cCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCC---CCEEE----------------
Confidence            888888888877766655   367788888888  778888888888888888752   11110                


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~  368 (609)
                                                    .+.+|...+.++                                      
T Consensus       314 ------------------------------~~~~~~~~v~~~--------------------------------------  325 (445)
T 2ovr_B          314 ------------------------------TLTGHQSLTSGM--------------------------------------  325 (445)
T ss_dssp             ------------------------------EECCCCSCEEEE--------------------------------------
T ss_pred             ------------------------------EEcCCcccEEEE--------------------------------------
Confidence                                          111222222211                                      


Q ss_pred             ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283          369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF  448 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (609)
                                                                                                      
T Consensus       326 --------------------------------------------------------------------------------  325 (445)
T 2ovr_B          326 --------------------------------------------------------------------------------  325 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEec---CCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEK---HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV  525 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~---h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~  525 (609)
                             .+++.++++|+.||.|++||+.++..  ...+..   |...|.+++|+  +.++++|+.|++|++||+.+++.
T Consensus       326 -------~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~  394 (445)
T 2ovr_B          326 -------ELKDNILVSGNADSTVKIWDIKTGQC--LQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEF  394 (445)
T ss_dssp             -------EEETTEEEEEETTSCEEEEETTTCCE--EEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred             -------EEeCCEEEEEeCCCeEEEEECCCCcE--EEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCce
Confidence                   12345677777777777777765543  233443   88899999995  68999999999999999987765


Q ss_pred             EEeee-----cCCCCceEEEEECCCCcEEEEEeCCCe----EEEEEcCC
Q 007283          526 KLKNM-----LYHTARINCLAWSPNNSMVATGSLDTC----VIIYEIDK  565 (609)
Q Consensus       526 ~~~~~-----~~h~~~i~~l~~s~d~~~l~s~s~D~~----v~vw~~~~  565 (609)
                      .. .+     ..|...|++++|+|++.+||+|+.||+    |.|||++.
T Consensus       395 ~~-~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          395 IR-NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             EE-EEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ee-eeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence            33 23     367889999999999999999999998    99999874

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1.7e-34  Score=314.81  Aligned_cols=292  Identities=22%  Similarity=0.291  Sum_probs=231.1

Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-----ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-----KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI  213 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-----~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~  213 (609)
                      ..+.+|.+.|.+++|+|++..++++|+.|+.|++|+....     .....+.+|...|.+++|+|+|++|++|+.|++|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            4678999999999999988778999999999999987542     33456789999999999999999999999999999


Q ss_pred             EEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcC
Q 007283          214 IYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN  293 (609)
Q Consensus       214 iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (609)
                      |||..++..+..+   .+|.+.|.+++|+|++++|++++.|++|++||...    .....+.                  
T Consensus       456 vwd~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~----~~~~~~~------------------  510 (694)
T 3dm0_A          456 LWDLAAGVSTRRF---VGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG----ECKYTIS------------------  510 (694)
T ss_dssp             EEETTTTEEEEEE---ECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS----CEEEEEC------------------
T ss_pred             EEECCCCcceeEE---eCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC----Ccceeec------------------
Confidence            9999998877665   37999999999999999999999999999999742    1111110                  


Q ss_pred             CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCC-CCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283          294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNID-PKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC  372 (609)
Q Consensus       294 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~  372 (609)
                                              ....+|...|.++++++.. ...+++++.|++|++|+......          .  
T Consensus       511 ------------------------~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~----------~--  554 (694)
T 3dm0_A          511 ------------------------EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKL----------R--  554 (694)
T ss_dssp             ------------------------SSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCE----------E--
T ss_pred             ------------------------cCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcE----------E--
Confidence                                    0123588889999988543 35899999999999997643110          0  


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeE
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTA  452 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (609)
                                       .                                                   ....+...+.+
T Consensus       555 -----------------~---------------------------------------------------~~~~h~~~v~~  566 (694)
T 3dm0_A          555 -----------------S---------------------------------------------------TLAGHTGYVST  566 (694)
T ss_dssp             -----------------E---------------------------------------------------EECCCSSCEEE
T ss_pred             -----------------E---------------------------------------------------EEcCCCCCEEE
Confidence                             0                                                   00012345889


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC
Q 007283          453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY  532 (609)
Q Consensus       453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~  532 (609)
                      ++++|+|+++++|+.||+|++||+..+...  ..+ .+...|.+++|+|++.++++++ |+.|++||+.+...... +..
T Consensus       567 v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~--~~~-~~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~-~~~  641 (694)
T 3dm0_A          567 VAVSPDGSLCASGGKDGVVLLWDLAEGKKL--YSL-EANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVED-LKV  641 (694)
T ss_dssp             EEECTTSSEEEEEETTSBCEEEETTTTEEE--ECC-BCSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEE-ECC
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEECCCCceE--EEe-cCCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhh-hcc
Confidence            999999999999999999999999877542  223 3556899999999999888765 56799999887654321 111


Q ss_pred             -------------------CCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          533 -------------------HTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       533 -------------------h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                                         +...+++++||||+++|++|+.||+|++|++.
T Consensus       642 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          642 DLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             CCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence                               11247899999999999999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.1e-34  Score=291.90  Aligned_cols=311  Identities=17%  Similarity=0.180  Sum_probs=228.2

Q ss_pred             EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc--eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283          141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK  218 (609)
Q Consensus       141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~  218 (609)
                      +..|..+|.+++|+|++.. +++++.|+.+++|+....+  ....+.+|...|.+++|+|++++|++++.|+.+++||..
T Consensus         4 ~~~~~~~i~~~~~s~~~~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~   82 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLK   82 (372)
T ss_dssp             EESCSSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEE
T ss_pred             ecccCCCeEEEEECCCCCE-EEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECC
Confidence            4568899999999999984 8999999999999988776  777788999999999999999999999999999999998


Q ss_pred             CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283          219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI  298 (609)
Q Consensus       219 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (609)
                      +++...... ..+|...|.+++|+|++++|++++.|+.|++||+..........                          
T Consensus        83 ~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~--------------------------  135 (372)
T 1k8k_C           83 GRTWKPTLV-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK--------------------------  135 (372)
T ss_dssp             TTEEEEEEE-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE--------------------------
T ss_pred             CCeeeeeEE-eecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeee--------------------------
Confidence            776443332 23688999999999999999999999999999986321000000                          


Q ss_pred             EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCC
Q 007283          299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE  378 (609)
Q Consensus       299 ~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (609)
                                         ....+|...|.++++++ ++.++++++.||.|++|+......        .          
T Consensus       136 -------------------~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~~~d~~~~~~--------~----------  177 (372)
T 1k8k_C          136 -------------------HIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEV--------E----------  177 (372)
T ss_dssp             -------------------EECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTT--------S----------
T ss_pred             -------------------eeecccCCCeeEEEEcC-CCCEEEEEcCCCCEEEEEcccccc--------c----------
Confidence                               00123445555555543 234555555555555554321000        0          


Q ss_pred             cEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC
Q 007283          379 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD  458 (609)
Q Consensus       379 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  458 (609)
                                                                                ...        .      -.+-
T Consensus       178 ----------------------------------------------------------~~~--------~------~~~~  185 (372)
T 1k8k_C          178 ----------------------------------------------------------ERP--------A------PTPW  185 (372)
T ss_dssp             ----------------------------------------------------------CCC--------C------CBTT
T ss_pred             ----------------------------------------------------------ccc--------c------cccc
Confidence                                                                      000        0      0000


Q ss_pred             CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283          459 GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN  538 (609)
Q Consensus       459 g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~  538 (609)
                      +.              +...+..  ...+.+|.+.|.+++|+|++.++++++.|+.+++||+.+.+. +..+..|...|+
T Consensus       186 ~~--------------~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~~v~  248 (372)
T 1k8k_C          186 GS--------------KMPFGEL--MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-VATLASETLPLL  248 (372)
T ss_dssp             BS--------------CCCTTCE--EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEE
T ss_pred             cc--------------ccchhhh--eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCce-eEEEccCCCCeE
Confidence            00              0111222  345568999999999999999999999999999999987664 445678999999


Q ss_pred             EEEECCCCcEEEEEeCCCeEEEEEcCC--CCC------------------------------cc-------eeEeccccC
Q 007283          539 CLAWSPNNSMVATGSLDTCVIIYEIDK--PAS------------------------------SR-------MTIKGAHLG  579 (609)
Q Consensus       539 ~l~~s~d~~~l~s~s~D~~v~vw~~~~--~~~------------------------------~~-------~~~~~~h~~  579 (609)
                      +++|+|++++|++| .|+.|++|++..  +..                              ..       ..+..+|..
T Consensus       249 ~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  327 (372)
T 1k8k_C          249 AVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKN  327 (372)
T ss_dssp             EEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSS
T ss_pred             EEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccC
Confidence            99999999999888 999999999975  210                              00       223358999


Q ss_pred             CeEEEEEc-CC----CeEEEEeCCCcEEEEEcc
Q 007283          580 GVYGLAFT-DE----HSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       580 ~v~~~~~s-~~----~~l~s~s~D~~i~~W~~~  607 (609)
                      .|++++|. ++    .+|+|+|.||+|++|++.
T Consensus       328 ~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~  360 (372)
T 1k8k_C          328 SVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR  360 (372)
T ss_dssp             CEEEEEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             CcceeEEecCCCcceeeEEEecCCCceEEEEec
Confidence            99999965 44    799999999999999984

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.6e-34  Score=313.41  Aligned_cols=296  Identities=21%  Similarity=0.297  Sum_probs=230.4

Q ss_pred             ccccCCCCcEEEEECCCC-CEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           52 IYGEHAYPATVARFSPNG-EWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g-~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      .+.+|.+.|++++|+|++ ++|+||+.|++|+||++.+.....                                     
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------------------------------------  419 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------------------------------------  419 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------------------------------------
T ss_pred             hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------------------------------------
Confidence            477999999999999875 799999999999999986542100                                     


Q ss_pred             EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC
Q 007283          131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                          +.....+.+|...|.+++|+|++.. +++|+.|+.|++||..+++....+.+|...|.+++|+|++++|++++.|+
T Consensus       420 ----~~~~~~~~~h~~~v~~v~~s~~g~~-l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~  494 (694)
T 3dm0_A          420 ----GVAQRRLTGHSHFVEDVVLSSDGQF-ALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDR  494 (694)
T ss_dssp             ----CEEEEEEECCSSCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTS
T ss_pred             ----ccccceecCCCCcEEEEEECCCCCE-EEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence                0011246688889999999998874 89999999999999999988889999999999999999999999999999


Q ss_pred             cEEEEeCCCCccccccCcCCCCccceEEEEECCCC--CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG--KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      +|++||..............+|...|.+++|+|++  .+|++++.|++|++||++.   .+..                 
T Consensus       495 ~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~---~~~~-----------------  554 (694)
T 3dm0_A          495 TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSN---CKLR-----------------  554 (694)
T ss_dssp             CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTT---CCEE-----------------
T ss_pred             EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCC---CcEE-----------------
Confidence            99999976554333222235799999999999987  5799999999999999862   1111                 


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccc
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~  368 (609)
                                                   ..+.+|...|.++++++ ++.++++++.||+|++|+...+..         
T Consensus       555 -----------------------------~~~~~h~~~v~~v~~sp-dg~~l~sg~~Dg~i~iwd~~~~~~---------  595 (694)
T 3dm0_A          555 -----------------------------STLAGHTGYVSTVAVSP-DGSLCASGGKDGVVLLWDLAEGKK---------  595 (694)
T ss_dssp             -----------------------------EEECCCSSCEEEEEECT-TSSEEEEEETTSBCEEEETTTTEE---------
T ss_pred             -----------------------------EEEcCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEECCCCce---------
Confidence                                         23457889999999875 567999999999999998643210         


Q ss_pred             ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283          369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF  448 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (609)
                                                                                              +..+....
T Consensus       596 ------------------------------------------------------------------------~~~~~~~~  603 (694)
T 3dm0_A          596 ------------------------------------------------------------------------LYSLEANS  603 (694)
T ss_dssp             ------------------------------------------------------------------------EECCBCSS
T ss_pred             ------------------------------------------------------------------------EEEecCCC
Confidence                                                                                    00001113


Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEE-----------------ecCCCceEEEEECCCCCEEEEEeC
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL-----------------EKHRGAVSVIRYSPDVSMFASGDV  511 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~-----------------~~h~~~i~~v~~s~~~~~l~s~s~  511 (609)
                      .+.+++++|++.++++++ |+.|++||++++.+......                 ..+...+++++|||||++|++|+.
T Consensus       604 ~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~  682 (694)
T 3dm0_A          604 VIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYT  682 (694)
T ss_dssp             CEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEET
T ss_pred             cEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcC
Confidence            477889999999888776 56699999987765322110                 111224789999999999999999


Q ss_pred             CCeEEEEEcc
Q 007283          512 NREAIVWDRV  521 (609)
Q Consensus       512 d~~v~iwd~~  521 (609)
                      |++|++||+.
T Consensus       683 Dg~i~iW~i~  692 (694)
T 3dm0_A          683 DGVIRVWGIG  692 (694)
T ss_dssp             TSEEEEEEC-
T ss_pred             CCeEEEEecc
Confidence            9999999964

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.9e-36  Score=313.34  Aligned_cols=184  Identities=10%  Similarity=0.073  Sum_probs=144.0

Q ss_pred             EEEEeCCCcEEEEcCCCCcee---eEEEeecccceeEEEECCC------CCEEEEEECCCCcceEEEEEcCCCCe-----
Q 007283           72 IASADVSGTVRIWGAHNDHVL---KKEFRVLSGRIDDLQWSPD------GLRIVACGDGKGKSLVRAFMWDSGTN-----  137 (609)
Q Consensus        72 las~~~d~~i~vWd~~~~~~~---~~~~~~~~~~v~~~~~spd------g~~l~~~~~~~~~~~~~~~~~~~~~~-----  137 (609)
                      +||++.|++|+||++.+++..   ...+..|.+.|..++|+|+      +.+|++++.+.   .+++|+...+..     
T Consensus       176 laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dg---tvrlWd~~~~~~~~~~~  252 (524)
T 2j04_B          176 FDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEG---TINFLEIIDNATDVHVF  252 (524)
T ss_dssp             ------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTS---CEEEEECCCCSSSSSEE
T ss_pred             hccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCC---eEEEEEcCCCccccccc
Confidence            344567899999999876532   1235567788999999997      56888877644   478888765431     


Q ss_pred             ------eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-eeeeccCcccceEEE--EEcCCC-CEEEEEe
Q 007283          138 ------VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-FKLSHRGHSNFVNCV--RFSPDG-SKFISVS  207 (609)
Q Consensus       138 ------~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-~~~~~~~h~~~v~~l--~~s~dg-~~l~s~~  207 (609)
                            ...+.+|...|.+++|+|++  .|++|+.|++|++||..... ....+.+|...|.++  .|+|+| .+||+|+
T Consensus       253 ~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S  330 (524)
T 2j04_B          253 KMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVA  330 (524)
T ss_dssp             ECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEE
T ss_pred             eeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEec
Confidence                  24678999999999999864  59999999999999987653 344578999999999  578888 8999999


Q ss_pred             CCCcEEEEeCCCCccccccCcCCCCc--cceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          208 SDKKGIIYDGKTADKIGELSPEDGHK--GSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       208 ~d~~i~iwd~~~~~~~~~~~~~~~h~--~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .|++++|||.++++....+.   +|.  ..|.+++|+|+++.+++++.|++|++||++
T Consensus       331 ~D~tvklWD~~~~~~~~~~~---~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~  385 (524)
T 2j04_B          331 VDGYFYIFNPKDIATTKTTV---SRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSR  385 (524)
T ss_dssp             TTSEEEEECGGGHHHHCEEE---EECSCCSCCCEEEETTTTEEEEECSSSEEEEEETT
T ss_pred             cCCeEEEEECCCCCcccccc---cccccCcccceEeCCCcCeEEEeCCCCcEEEEECc
Confidence            99999999998877665442   444  258899999999999999999999999975

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.1e-35  Score=294.55  Aligned_cols=208  Identities=13%  Similarity=0.138  Sum_probs=173.5

Q ss_pred             CCccccccccCCCCcEEEEECCCC-CEEEEEeCCCcEEEEcCCCCceeeEEE--eecccceeEEEECC-CCCEEEEEECC
Q 007283           46 NPLQVSIYGEHAYPATVARFSPNG-EWIASADVSGTVRIWGAHNDHVLKKEF--RVLSGRIDDLQWSP-DGLRIVACGDG  121 (609)
Q Consensus        46 ~~~~~~~~~~h~~~v~~~~~sp~g-~~las~~~d~~i~vWd~~~~~~~~~~~--~~~~~~v~~~~~sp-dg~~l~~~~~~  121 (609)
                      .......+.+|.+.|++++|+|+| ++||+|+.|++|+|||+.+++... .+  ..|...|.+++|+| ++.+|++++.+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  140 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTS-FIQGMGPGDAITGMKFNQFNTNQLFVSSIR  140 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEE-EECCCSTTCBEEEEEEETTEEEEEEEEETT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccce-eeecCCcCCceeEEEeCCCCCCEEEEEeCC
Confidence            334445678999999999999999 999999999999999998766432 23  35889999999999 67788877654


Q ss_pred             CCcceEEEEEcCCCCeeEEEecC---CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcC
Q 007283          122 KGKSLVRAFMWDSGTNVGEFDGH---SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP  198 (609)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~h---~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~  198 (609)
                      .   .+++|+.+. ..+..+..|   ...|.+++|+|++.. +++|+.|+.+++||. ..+....+.+|...|.+++|+|
T Consensus       141 ~---~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~  214 (383)
T 3ei3_B          141 G---ATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQM-LATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP  214 (383)
T ss_dssp             T---EEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTE-EEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS
T ss_pred             C---EEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCE-EEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC
Confidence            3   467777764 455555544   478999999999984 999999999999998 4667778889999999999999


Q ss_pred             CCC-EEEEEeCCCcEEEEeCCCC----ccccccCcCCCCccceEEEEECC-CCCeEEEEeCCCcEEEeeccc
Q 007283          199 DGS-KFISVSSDKKGIIYDGKTA----DKIGELSPEDGHKGSVYAVSWSP-DGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       199 dg~-~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~d~~i~iwd~~~  264 (609)
                      +++ +|++++.|+.+++||..+.    ..+..+    +|.+.|.+++|+| ++++|++++.|+.|++||+..
T Consensus       215 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~  282 (383)
T 3ei3_B          215 RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM----PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD  282 (383)
T ss_dssp             SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE----ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred             CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe----cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence            999 9999999999999998873    333333    5889999999999 999999999999999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=3.7e-34  Score=286.13  Aligned_cols=297  Identities=18%  Similarity=0.259  Sum_probs=230.7

Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecC---CCeEEEEeCCCCceeee-ccCcccceEEEEEcCC---CCEEEEEeCCCcE
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGE---DFLVNFYEGPPFKFKLS-HRGHSNFVNCVRFSPD---GSKFISVSSDKKG  212 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~---d~~i~~~~~~~~~~~~~-~~~h~~~v~~l~~s~d---g~~l~s~~~d~~i  212 (609)
                      .+.+|...|.+++|+|++..++++|+.   |+.+++|+....+.... ..+|...|.+++|+|+   |++|++++.|+.+
T Consensus        13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i   92 (357)
T 3i2n_A           13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNL   92 (357)
T ss_dssp             EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCE
T ss_pred             hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeE
Confidence            457899999999999999877888887   99999999887765543 3479999999999999   6999999999999


Q ss_pred             EEEeCCCCc-cccccCcCCCCccceEEEE------ECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccce
Q 007283          213 IIYDGKTAD-KIGELSPEDGHKGSVYAVS------WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDM  285 (609)
Q Consensus       213 ~iwd~~~~~-~~~~~~~~~~h~~~V~~l~------~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  285 (609)
                      ++||..+++ .+..+   .+|.+.|.++.      |+|++++|++++.|+.|++||+....  .....+...        
T Consensus        93 ~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~--~~~~~~~~~--------  159 (357)
T 3i2n_A           93 HIWNLEAPEMPVYSV---KGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD--DPVANMEPV--------  159 (357)
T ss_dssp             EEECTTSCSSCSEEE---CCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS--SCSEEECCC--------
T ss_pred             EEEeCCCCCccEEEE---EecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC--Ccceecccc--------
Confidence            999999887 55544   47999999995      57899999999999999999986421  111111100        


Q ss_pred             EEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeC-CCCCeEEEEEe---cCCCCEEEEEecCCcEEEEecCccccce
Q 007283          286 LVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSG-HMKNVTALTVL---NIDPKVILSSSYDGLIVKWIQGIGYGGK  361 (609)
Q Consensus       286 ~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-h~~~v~~~~~~---~~~~~~~~t~s~dg~i~~W~~~~~~~~~  361 (609)
                                                         .+ +...+.++++.   ..++.++++++.|+.|++|+......  
T Consensus       160 -----------------------------------~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--  202 (357)
T 3i2n_A          160 -----------------------------------QGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL--  202 (357)
T ss_dssp             -----------------------------------TTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE--
T ss_pred             -----------------------------------CCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce--
Confidence                                               01 12356666642   34568999999999999997643210  


Q ss_pred             eccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeee
Q 007283          362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVV  441 (609)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (609)
                                                                                                     .
T Consensus       203 -------------------------------------------------------------------------------~  203 (357)
T 3i2n_A          203 -------------------------------------------------------------------------------R  203 (357)
T ss_dssp             -------------------------------------------------------------------------------E
T ss_pred             -------------------------------------------------------------------------------e
Confidence                                                                                           0


Q ss_pred             EEeccCCceeEEEEcC---CCCEEEEEeCCCcEEEEEecCCeeeee---EEEecCCCceEEEEECCCCC-EEEEEeCCCe
Q 007283          442 STINLRFPVTASAIAP---DGSEAIIGSQDGKLRVYSIRGDTLTEE---AVLEKHRGAVSVIRYSPDVS-MFASGDVNRE  514 (609)
Q Consensus       442 ~~~~~~~~~~~~~~sp---~g~~l~~gs~dg~i~iw~~~~~~~~~~---~~~~~h~~~i~~v~~s~~~~-~l~s~s~d~~  514 (609)
                      ....+..++.+++++|   ++.++++|+.||.|++|+++.+.....   ..+.+|...|.+++|+|++. ++++++.|+.
T Consensus       204 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          204 WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence            0011224578899999   999999999999999999976543211   13458999999999999998 8999999999


Q ss_pred             EEEEEccCCc------------------eEEeeecCCCCceEEEEECCCCcEEE-EEeCCCeEEEEEcCC
Q 007283          515 AIVWDRVSRE------------------VKLKNMLYHTARINCLAWSPNNSMVA-TGSLDTCVIIYEIDK  565 (609)
Q Consensus       515 v~iwd~~~~~------------------~~~~~~~~h~~~i~~l~~s~d~~~l~-s~s~D~~v~vw~~~~  565 (609)
                      +++||+....                  ..+..+..|...|++++|+|++++|+ +++.|+.|++|++..
T Consensus       284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            9999986532                  23445678999999999999999998 899999999999875

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-35  Score=298.62  Aligned_cols=310  Identities=16%  Similarity=0.200  Sum_probs=215.5

Q ss_pred             EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC--ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283          141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF--KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK  218 (609)
Q Consensus       141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~  218 (609)
                      +..+...|.+++|+|++. .+++|+.|+.+++|+..+.  +....+.+|...|++++|+|++++|++++.|+.+++||..
T Consensus         7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            345667899999999988 5999999999999998877  6777889999999999999999999999999999999998


Q ss_pred             CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283          219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI  298 (609)
Q Consensus       219 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (609)
                      +++.........+|...|.+++|+|++++|++++.|+.|++||+......                              
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~------------------------------  135 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW------------------------------  135 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C------------------------------
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc------------------------------
Confidence            87611111123479999999999999999999999999999998631100                              


Q ss_pred             EEcCCcEEEEeCCCCCCCceeeeC-CCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283          299 VSLGGTISIFSANDLEKSPLQLSG-HMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE  377 (609)
Q Consensus       299 ~~~~g~i~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~  377 (609)
                                      .....+.+ |...|.++++++ ++.++++++.|++|++|+......                  
T Consensus       136 ----------------~~~~~~~~~h~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~------------------  180 (377)
T 3dwl_C          136 ----------------WVSKHLKRPLRSTILSLDWHP-NNVLLAAGCADRKAYVLSAYVRDV------------------  180 (377)
T ss_dssp             ----------------CCCEEECSSCCSCEEEEEECT-TSSEEEEEESSSCEEEEEECCSSC------------------
T ss_pred             ----------------eeeeEeecccCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEEEeccc------------------
Confidence                            00112233 666666666653 345666666666666664321100                  


Q ss_pred             CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283          378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP  457 (609)
Q Consensus       378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  457 (609)
                                       .                                         ...              ...+
T Consensus       181 -----------------~-----------------------------------------~~~--------------~~~~  188 (377)
T 3dwl_C          181 -----------------D-----------------------------------------AKP--------------EASV  188 (377)
T ss_dssp             -----------------C------------------------------------------CC--------------CSCS
T ss_pred             -----------------C-----------------------------------------CCc--------------cccc
Confidence                             0                                         000              0001


Q ss_pred             CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE---EeeecCCC
Q 007283          458 DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK---LKNMLYHT  534 (609)
Q Consensus       458 ~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~---~~~~~~h~  534 (609)
                      .+..+              ..+.  ....+ +|.+.|.+++|+|+++++++++.|++|++||+.+.+..   +..+..|.
T Consensus       189 ~~~~~--------------~~~~--~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  251 (377)
T 3dwl_C          189 WGSRL--------------PFNT--VCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQ  251 (377)
T ss_dssp             SCSCC--------------CEEE--EEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSS
T ss_pred             ccccc--------------chhh--hhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCC
Confidence            11000              0011  12234 89999999999999999999999999999998877541   34567899


Q ss_pred             CceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCc---------------------------------------------
Q 007283          535 ARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASS---------------------------------------------  569 (609)
Q Consensus       535 ~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~---------------------------------------------  569 (609)
                      ..|++++|+|++++|++|+.|+.+ +|+.......                                             
T Consensus       252 ~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  330 (377)
T 3dwl_C          252 LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLK  330 (377)
T ss_dssp             SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------
T ss_pred             CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhc
Confidence            999999999999999999887776 5654311100                                             


Q ss_pred             -----ceeEeccccCCeEEEEEc-C-CC---eEEEEeCCCcEEEEEc
Q 007283          570 -----RMTIKGAHLGGVYGLAFT-D-EH---SVVSSGEDACVRVWRL  606 (609)
Q Consensus       570 -----~~~~~~~h~~~v~~~~~s-~-~~---~l~s~s~D~~i~~W~~  606 (609)
                           ......+|...|+++++. + +.   .|+|+|.||.|++|++
T Consensus       331 g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          331 GSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             ------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             cccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                 000122499999999976 3 23   6999999999999986

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=1.6e-33  Score=292.31  Aligned_cols=322  Identities=19%  Similarity=0.290  Sum_probs=247.2

Q ss_pred             cccccCCCCc-EEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           51 SIYGEHAYPA-TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        51 ~~~~~h~~~v-~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      ..+.+|.+.| .++.+  ++++|++|+.||+|++||+.+++. ...+..|.+.|.+++|+|++ .|++++.+.   .+++
T Consensus       115 ~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~-~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg---~i~v  187 (464)
T 3v7d_B          115 TTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF-LLQLSGHDGGVWALKYAHGG-ILVSGSTDR---TVRV  187 (464)
T ss_dssp             EEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECSTT-EEEEEETTS---CEEE
T ss_pred             EEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcE-EEEEeCCCcCEEEEEEcCCC-EEEEEeCCC---CEEE
Confidence            4578999885 55555  678999999999999999988764 45678899999999999999 777776543   4788


Q ss_pred             EEcCCCCeeEEEecCCccEEEEEEeeC-CCeEEEEecCCCeEEEEeCCCCce-----------------------eeecc
Q 007283          130 FMWDSGTNVGEFDGHSRRVLSCAFKPS-RPFRIATCGEDFLVNFYEGPPFKF-----------------------KLSHR  185 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~-~~~~i~t~~~d~~i~~~~~~~~~~-----------------------~~~~~  185 (609)
                      |+.+.+..+..+.+|...|.+++|+|. +...+++|+.|+.+++|+....+.                       ...+.
T Consensus       188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            888888889999999999999999963 334699999999999999765432                       34567


Q ss_pred             CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccC
Q 007283          186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISED  265 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~  265 (609)
                      +|...+.++  +++++.|++++.|+.+++||..+++.+..+   .+|...|.+++|+|+++++++++.|++|++||+.. 
T Consensus       268 ~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~-  341 (464)
T 3v7d_B          268 GHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLEN-  341 (464)
T ss_dssp             CCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT-
T ss_pred             CccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEe---cCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC-
Confidence            888888876  678889999999999999999998887766   37999999999999999999999999999999852 


Q ss_pred             CCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEec
Q 007283          266 NHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY  345 (609)
Q Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~  345 (609)
                        ++..                                              ..+.+|...|.++.+.            
T Consensus       342 --~~~~----------------------------------------------~~~~~h~~~v~~~~~~------------  361 (464)
T 3v7d_B          342 --GELM----------------------------------------------YTLQGHTALVGLLRLS------------  361 (464)
T ss_dssp             --TEEE----------------------------------------------EEECCCSSCEEEEEEC------------
T ss_pred             --CcEE----------------------------------------------EEEeCCCCcEEEEEEc------------
Confidence              2111                                              1223454455444442            


Q ss_pred             CCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEE
Q 007283          346 DGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVL  425 (609)
Q Consensus       346 dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  425 (609)
                                                                                                      
T Consensus       362 --------------------------------------------------------------------------------  361 (464)
T 3v7d_B          362 --------------------------------------------------------------------------------  361 (464)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCE
Q 007283          426 VSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSM  505 (609)
Q Consensus       426 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~  505 (609)
                                                       +.++++|+.||.|++||+......   ....|...+..++|+|++.+
T Consensus       362 ---------------------------------~~~l~s~s~dg~v~vwd~~~~~~~---~~~~~~~~~~~~~~~~~~~~  405 (464)
T 3v7d_B          362 ---------------------------------DKFLVSAAADGSIRGWDANDYSRK---FSYHHTNLSAITTFYVSDNI  405 (464)
T ss_dssp             ---------------------------------SSEEEEEETTSEEEEEETTTCCEE---EEEECTTCCCEEEEEECSSE
T ss_pred             ---------------------------------CCEEEEEeCCCcEEEEECCCCcee---eeecCCCCccEEEEEeCCCE
Confidence                                             234455555555555555433211   11135556777889999999


Q ss_pred             EEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          506 FASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       506 l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      +++|+ |+.+++||+.+++........|...|++++|+ +..++++++.|+.+.+|-+
T Consensus       406 l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~l  461 (464)
T 3v7d_B          406 LVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEIL  461 (464)
T ss_dssp             EEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEEE
T ss_pred             EEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEEe
Confidence            99998 99999999988876554467799999999997 4566677778887766543

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=4.7e-35  Score=292.86  Aligned_cols=295  Identities=12%  Similarity=0.064  Sum_probs=208.4

Q ss_pred             ccceEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCccccc--c-----CcCCCCccceEEEEECCCCCeEEEEeC
Q 007283          188 SNFVNCVRFSPDGSKFISVSSDK-------KGIIYDGKTADKIGE--L-----SPEDGHKGSVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       188 ~~~v~~l~~s~dg~~l~s~~~d~-------~i~iwd~~~~~~~~~--~-----~~~~~h~~~V~~l~~spd~~~l~s~s~  253 (609)
                      ..+|++++|+|||++|++|+.|.       .|++|+.........  +     ....+|...|.+++++  +..+++++.
T Consensus        14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~   91 (365)
T 4h5i_A           14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCN   91 (365)
T ss_dssp             SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECC
T ss_pred             CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEEC
Confidence            35799999999999999998654       499998765442210  0     0123677788887764  556666654


Q ss_pred             -----------CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeC
Q 007283          254 -----------DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSG  322 (609)
Q Consensus       254 -----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~  322 (609)
                                 |+++|+|++....  .....                                  ....    .......
T Consensus        92 ~~~~~l~s~~~d~~~r~~~~~~~~--~~~~~----------------------------------~~~~----~~~~~~~  131 (365)
T 4h5i_A           92 ENSTKITQGKGNKHLRKFKYDKVN--DQLEF----------------------------------LTSV----DFDASTN  131 (365)
T ss_dssp             CCHHHHHHTSCCCCEEEEEEETTT--TEEEE----------------------------------EEEE----CSSCCCC
T ss_pred             CCccEEEEecCCCcEEEEEecCCC--ceEEE----------------------------------eeee----ceeecCC
Confidence                       5556666553211  00000                                  0000    0011223


Q ss_pred             CCCCeEEEEEecCCCCEE--EEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccc
Q 007283          323 HMKNVTALTVLNIDPKVI--LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG  400 (609)
Q Consensus       323 h~~~v~~~~~~~~~~~~~--~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  400 (609)
                      +...+..++|++ +++++  ++++.|++|++|+.....                                          
T Consensus       132 ~~~~~~~v~fSp-Dg~~la~as~~~d~~i~iwd~~~~~------------------------------------------  168 (365)
T 4h5i_A          132 ADDYTKLVYISR-EGTVAAIASSKVPAIMRIIDPSDLT------------------------------------------  168 (365)
T ss_dssp             TTCCEEEEEECT-TSSCEEEEESCSSCEEEEEETTTTE------------------------------------------
T ss_pred             cccCEEEEEEcC-CCCEEEEEECCCCCEEEEeECCCCc------------------------------------------
Confidence            455677888875 44554  456689999999764321                                          


Q ss_pred             cccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCe
Q 007283          401 YANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDT  480 (609)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~  480 (609)
                                                             ....+.+..+|.+++|+|||+++++++.|+ +++|+...+.
T Consensus       169 ---------------------------------------~~~~~~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~  208 (365)
T 4h5i_A          169 ---------------------------------------EKFEIETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGS  208 (365)
T ss_dssp             ---------------------------------------EEEEEECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCC
T ss_pred             ---------------------------------------EEEEeCCCCceEEEEEccCCceEEecccee-EEEEEeccCc
Confidence                                                   001112234588999999999999998555 5666655555


Q ss_pred             eeeeEEEecCCCceEEEEECCCCCEEEEEeCCC----eEEEEEccCCceE---EeeecCCCCceEEEEECCCCcEEEEEe
Q 007283          481 LTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR----EAIVWDRVSREVK---LKNMLYHTARINCLAWSPNNSMVATGS  553 (609)
Q Consensus       481 ~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~----~v~iwd~~~~~~~---~~~~~~h~~~i~~l~~s~d~~~l~s~s  553 (609)
                      ........+|...|.+++|+|++.++++++.|+    ++++|+.......   ...+..|...|++++|||||++||+|+
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs  288 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLAS  288 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEc
Confidence            444455678999999999999999999999888    6889997665432   234668999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEccC
Q 007283          554 LDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       554 ~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      .|++|+|||+.+.+ ....++.+|...|++|+|| |+++|+|+|.|++|+||+|..
T Consensus       289 ~D~~V~iwd~~~~~-~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~  343 (365)
T 4h5i_A          289 NDNSIALVKLKDLS-MSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPL  343 (365)
T ss_dssp             TTSCEEEEETTTTE-EEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred             CCCEEEEEECCCCc-EEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence            99999999997643 3334568999999999999 789999999999999999953

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=2.2e-34  Score=290.92  Aligned_cols=296  Identities=16%  Similarity=0.143  Sum_probs=230.1

Q ss_pred             CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec--cCcccceEEEEEcC-CCCEEEEEeCCCcE
Q 007283          136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH--RGHSNFVNCVRFSP-DGSKFISVSSDKKG  212 (609)
Q Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~--~~h~~~v~~l~~s~-dg~~l~s~~~d~~i  212 (609)
                      .....+.+|...|.+++|+|++...+++|+.|+.+++|+....+....+  .+|...|.+++|+| ++++|++++.|+.+
T Consensus        64 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i  143 (383)
T 3ei3_B           64 KLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGAT  143 (383)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEE
T ss_pred             ceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEE
Confidence            3445678999999999999998446999999999999998877665554  47999999999999 67899999999999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      ++||... ..+..+....+|...|.+++|+|++++|++++.|+.|++||++    ++..                     
T Consensus       144 ~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~----~~~~---------------------  197 (383)
T 3ei3_B          144 TLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD----GHEI---------------------  197 (383)
T ss_dssp             EEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT----SCEE---------------------
T ss_pred             EEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC----CCEE---------------------
Confidence            9999985 4444443334567889999999999999999999999999974    1111                     


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283          293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC  372 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~  372 (609)
                                               ..+.+|...|.++++++..+.++++++.|++|++|+.......            
T Consensus       198 -------------------------~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~------------  240 (383)
T 3ei3_B          198 -------------------------FKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDK------------  240 (383)
T ss_dssp             -------------------------EEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCST------------
T ss_pred             -------------------------EEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcc------------
Confidence                                     2244688899999998655459999999999999976432100            


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeE
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTA  452 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (609)
                                                                                       ......+.+..++.+
T Consensus       241 -----------------------------------------------------------------~~~~~~~~~~~~v~~  255 (383)
T 3ei3_B          241 -----------------------------------------------------------------NSYIAEMPHEKPVNA  255 (383)
T ss_dssp             -----------------------------------------------------------------TCEEEEEECSSCEEE
T ss_pred             -----------------------------------------------------------------cceEEEecCCCceEE
Confidence                                                                             000111123356889


Q ss_pred             EEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC-------C----------CceEEEEECCCCCEEEEEeCCCe
Q 007283          453 SAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH-------R----------GAVSVIRYSPDVSMFASGDVNRE  514 (609)
Q Consensus       453 ~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h-------~----------~~i~~v~~s~~~~~l~s~s~d~~  514 (609)
                      ++++| +++++++++.|+.|++||++.....  ..+.+|       .          +.+.+++|+|++++  +|+.|++
T Consensus       256 ~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~  331 (383)
T 3ei3_B          256 AYFNPTDSTKLLTTDQRNEIRVYSSYDWSKP--DQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT  331 (383)
T ss_dssp             EEECTTTSCEEEEEESSSEEEEEETTBTTSC--SEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC
T ss_pred             EEEcCCCCCEEEEEcCCCcEEEEECCCCccc--cccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe
Confidence            99999 9999999999999999999765432  223323       2          34555777888877  8889999


Q ss_pred             EEEEEccCCceEEeeecC--CCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          515 AIVWDRVSREVKLKNMLY--HTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       515 v~iwd~~~~~~~~~~~~~--h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      |++||+.+++.. ..+..  |...+.+++|+|++++|++|+ |+.|++||++.
T Consensus       332 i~iwd~~~~~~~-~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          332 IDIYDANSGGLV-HQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEEEETTTCCEE-EEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEEecCCCcee-eeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            999998877653 33444  567788889999999999997 99999999863

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=4.4e-33  Score=287.32  Aligned_cols=321  Identities=20%  Similarity=0.329  Sum_probs=254.4

Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      ....+.+|.+.|.. ++++++. .+++|+.|+.+++|+..+++....+.+|...|.++.|+  ++.|++|+.|+.|++||
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN  185 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence            34568899987543 2455565 59999999999999999999999999999999999997  56899999999999999


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL  296 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (609)
                      ..+++.+..+   .+|...|.++.|+  +.++++++.|++|++||+..   ++..                         
T Consensus       186 ~~~~~~~~~~---~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~---~~~~-------------------------  232 (445)
T 2ovr_B          186 AETGECIHTL---YGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIET---GQCL-------------------------  232 (445)
T ss_dssp             TTTTEEEEEE---CCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSS---CCEE-------------------------
T ss_pred             CCcCcEEEEE---CCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCC---CcEE-------------------------
Confidence            9999887766   3799999999995  57899999999999999862   2111                         


Q ss_pred             EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283          297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI  376 (609)
Q Consensus       297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~  376 (609)
                                           ..+.+|...|.++.+   ++..+++++.||.|++|+...+..          +      
T Consensus       233 ---------------------~~~~~~~~~v~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~----------~------  272 (445)
T 2ovr_B          233 ---------------------HVLMGHVAAVRCVQY---DGRRVVSGAYDFMVKVWDPETETC----------L------  272 (445)
T ss_dssp             ---------------------EEEECCSSCEEEEEE---CSSCEEEEETTSCEEEEEGGGTEE----------E------
T ss_pred             ---------------------EEEcCCcccEEEEEE---CCCEEEEEcCCCEEEEEECCCCcE----------e------
Confidence                                 123467888888887   447899999999999997643210          0      


Q ss_pred             CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                                   ..+                                                   ..+..++.++++ 
T Consensus       273 -------------~~~---------------------------------------------------~~~~~~v~~~~~-  287 (445)
T 2ovr_B          273 -------------HTL---------------------------------------------------QGHTNRVYSLQF-  287 (445)
T ss_dssp             -------------EEE---------------------------------------------------CCCSSCEEEEEE-
T ss_pred             -------------EEe---------------------------------------------------cCCCCceEEEEE-
Confidence                         000                                                   001134566666 


Q ss_pred             CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC---C
Q 007283          457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY---H  533 (609)
Q Consensus       457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---h  533 (609)
                       ++.++++|+.|+.|++||+.++..  ...+.+|...+.++.+  ++.++++|+.|+.+++||+.+.+.. ..+..   |
T Consensus       288 -~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~~~~~~  361 (445)
T 2ovr_B          288 -DGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCL-QTLQGPNKH  361 (445)
T ss_dssp             -CSSEEEEEETTSCEEEEETTTCCE--EEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEE-EEECSTTSC
T ss_pred             -CCCEEEEEeCCCeEEEEECCCCCE--EEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEE-EEEccCCCC
Confidence             789999999999999999987654  3567889999998887  5679999999999999998776543 33443   8


Q ss_pred             CCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeE----eccccCCeEEEEEc-CCCeEEEEeCCCc----EEEE
Q 007283          534 TARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTI----KGAHLGGVYGLAFT-DEHSVVSSGEDAC----VRVW  604 (609)
Q Consensus       534 ~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~----~~~h~~~v~~~~~s-~~~~l~s~s~D~~----i~~W  604 (609)
                      ...|++++|+  +++|++|+.||+|++||+..+. ....+    ..+|.+.|++++|+ ++..+++++.||+    +.+|
T Consensus       362 ~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~  438 (445)
T 2ovr_B          362 QSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL  438 (445)
T ss_dssp             SSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-EEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEE
T ss_pred             CCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCc-eeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEE
Confidence            8899999995  6899999999999999998643 22222    14788999999999 5677889999998    9999


Q ss_pred             EccC
Q 007283          605 RLTP  608 (609)
Q Consensus       605 ~~~~  608 (609)
                      +++.
T Consensus       439 df~~  442 (445)
T 2ovr_B          439 DFDV  442 (445)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=5e-35  Score=300.67  Aligned_cols=297  Identities=18%  Similarity=0.197  Sum_probs=224.4

Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc--eeeeccCcccceEEEEEcC-CCCEEEEEeCCCcEEEE
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSP-DGSKFISVSSDKKGIIY  215 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~d~~i~iw  215 (609)
                      ....+|...|++++|+|.++.+||+|+.|+.|++||....+  ....+.+|...|++|+|+| ++.+|++|+.|++|++|
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            34568889999999999877679999999999999987654  3455679999999999998 68899999999999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF  295 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (609)
                      |.+++... .+.....+...+.+++|+|++.+|++|+.||+|++||++.    +.                         
T Consensus       193 d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~----~~-------------------------  242 (435)
T 4e54_B          193 DFKGNILR-VFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG----KE-------------------------  242 (435)
T ss_dssp             ETTSCEEE-EEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS----CB-------------------------
T ss_pred             eccCCcee-EEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc----ce-------------------------
Confidence            98765432 2222234556788999999999999999999999999752    10                         


Q ss_pred             EEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee
Q 007283          296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA  375 (609)
Q Consensus       296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~  375 (609)
                                           ...+.+|...|.+++|++..+.++++++.|++|++|+.........             
T Consensus       243 ---------------------~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~-------------  288 (435)
T 4e54_B          243 ---------------------LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKAS-------------  288 (435)
T ss_dssp             ---------------------CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSC-------------
T ss_pred             ---------------------eEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccce-------------
Confidence                                 1224578899999999876667999999999999998643210000             


Q ss_pred             eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEE
Q 007283          376 IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI  455 (609)
Q Consensus       376 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (609)
                                                                                      ......+..+|.+++|
T Consensus       289 ----------------------------------------------------------------~~~~~~h~~~v~~~~~  304 (435)
T 4e54_B          289 ----------------------------------------------------------------FLYSLPHRHPVNAACF  304 (435)
T ss_dssp             ----------------------------------------------------------------CSBCCBCSSCEEECCB
T ss_pred             ----------------------------------------------------------------EEEeeeccccccceeE
Confidence                                                                            0000012346888999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCC------ceEEEEECCCCCEEEEEe------------CCCeEEE
Q 007283          456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG------AVSVIRYSPDVSMFASGD------------VNREAIV  517 (609)
Q Consensus       456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~------~i~~v~~s~~~~~l~s~s------------~d~~v~i  517 (609)
                      +|+|++|++|+.||+|++|++..+...  ..+..|..      .+....|+|++..+++++            .++.|++
T Consensus       305 spdg~~l~s~~~D~~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~i  382 (435)
T 4e54_B          305 SPDGARLLTTDQKSEIRVYSASQWDCP--LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDV  382 (435)
T ss_dssp             CTTSSEEEEEESSSCEEEEESSSSSSE--EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEE
T ss_pred             CCCCCeeEEEcCCCEEEEEECCCCccc--eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEE
Confidence            999999999999999999999876542  22333321      223345667766666654            3467999


Q ss_pred             EEccCCceEEeeecCCCCceEEE-EECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          518 WDRVSREVKLKNMLYHTARINCL-AWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       518 wd~~~~~~~~~~~~~h~~~i~~l-~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      ||..+++........|...|.++ +|||||++||+|+ |++|+||++..+
T Consensus       383 wd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~g  431 (435)
T 4e54_B          383 FDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEA  431 (435)
T ss_dssp             ECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC--
T ss_pred             EECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcC
Confidence            99988776554455788899988 7999999999886 889999998754

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-33  Score=275.15  Aligned_cols=253  Identities=22%  Similarity=0.346  Sum_probs=199.8

Q ss_pred             CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      .+|.+.|++++|+|+|++|++++.|++|++||+.... .                                         
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~-----------------------------------------   43 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-H-----------------------------------------   43 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-B-----------------------------------------
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-c-----------------------------------------
Confidence            4899999999999999999999999999999975210 0                                         


Q ss_pred             CCCCCCCceeeeCCCCCeEEEEEecC-CCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccce
Q 007283          310 ANDLEKSPLQLSGHMKNVTALTVLNI-DPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNK  388 (609)
Q Consensus       310 ~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  388 (609)
                           .....+.+|...|.+++|.+. .+.++++|+.|++|++|+...+....        +                  
T Consensus        44 -----~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~--------~------------------   92 (297)
T 2pm7_B           44 -----KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQ--------I------------------   92 (297)
T ss_dssp             -----CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCC--------C------------------
T ss_pred             -----EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEE--------E------------------
Confidence                 112346789999999999642 36799999999999999764321000        0                  


Q ss_pred             EEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC--CCEEEEEe
Q 007283          389 IWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD--GSEAIIGS  466 (609)
Q Consensus       389 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~~l~~gs  466 (609)
                                                                          .....+...+.+++++|+  |.++++|+
T Consensus        93 ----------------------------------------------------~~~~~h~~~v~~v~~~p~~~g~~l~s~s  120 (297)
T 2pm7_B           93 ----------------------------------------------------AVHAVHSASVNSVQWAPHEYGPMLLVAS  120 (297)
T ss_dssp             ----------------------------------------------------EEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred             ----------------------------------------------------EEeecCCCceeEEEeCcCCCCcEEEEEE
Confidence                                                                000012245889999998  89999999


Q ss_pred             CCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC-------------CCEEEEEeCCCeEEEEEccCCce---EEeee
Q 007283          467 QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD-------------VSMFASGDVNREAIVWDRVSREV---KLKNM  530 (609)
Q Consensus       467 ~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~-------------~~~l~s~s~d~~v~iwd~~~~~~---~~~~~  530 (609)
                      .|++|++|+++.........+.+|...|.+++|+|+             +++|++|+.|++|++||+.+...   ....+
T Consensus       121 ~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l  200 (297)
T 2pm7_B          121 SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTL  200 (297)
T ss_dssp             TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEE
T ss_pred             CCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEe
Confidence            999999999976532223567899999999999997             57999999999999999876542   23456


Q ss_pred             cCCCCceEEEEECCCC---cEEEEEeCCCeEEEEEcCCCCCc-ceeEe--ccccCCeEEEEEc-CCCeEEEEeCCCcEEE
Q 007283          531 LYHTARINCLAWSPNN---SMVATGSLDTCVIIYEIDKPASS-RMTIK--GAHLGGVYGLAFT-DEHSVVSSGEDACVRV  603 (609)
Q Consensus       531 ~~h~~~i~~l~~s~d~---~~l~s~s~D~~v~vw~~~~~~~~-~~~~~--~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~  603 (609)
                      .+|...|++++|+|++   ++||+++.|++|++||+...... .....  .+|...|++++|+ ++++|++++.|++|++
T Consensus       201 ~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~l  280 (297)
T 2pm7_B          201 EGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTL  280 (297)
T ss_dssp             CCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEE
T ss_pred             cCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEE
Confidence            7899999999999995   89999999999999998753211 11222  4688999999999 7889999999999999


Q ss_pred             EEcc
Q 007283          604 WRLT  607 (609)
Q Consensus       604 W~~~  607 (609)
                      |++.
T Consensus       281 w~~~  284 (297)
T 2pm7_B          281 WKEN  284 (297)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9975

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=3.2e-34  Score=287.61  Aligned_cols=338  Identities=19%  Similarity=0.259  Sum_probs=230.3

Q ss_pred             ccccCCCCcEEEEECCC----CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283           52 IYGEHAYPATVARFSPN----GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV  127 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~----g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  127 (609)
                      ...+|.+.|++++|+|+    ..++++++.++.|+|||+.+++.+. .+..+                            
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~-~~~~~----------------------------   63 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR-LLQSY----------------------------   63 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE-EEEEE----------------------------
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE-eeeec----------------------------
Confidence            45689999999999994    4455555566799999998655321 11110                            


Q ss_pred             EEEEcCCCCeeEEEecCCccEEEEEEeeCCC---eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcC-CCCEE
Q 007283          128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP---FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP-DGSKF  203 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~---~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l  203 (609)
                                  ....|...|.+++|+|++.   ..+++|+.|+.+++|+..+.+....+.+|...|.+++|+| ++.+|
T Consensus        64 ------------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l  131 (366)
T 3k26_A           64 ------------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLL  131 (366)
T ss_dssp             ------------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEE
T ss_pred             ------------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEE
Confidence                        0113566788888888732   3699999999999999999988888999999999999999 89999


Q ss_pred             EEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCcc
Q 007283          204 ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVD  283 (609)
Q Consensus       204 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~  283 (609)
                      ++++.|+.|++||..+++.+..+....+|...|.+++|+|++++|++++.|+.|++||+..   ++....+........ 
T Consensus       132 ~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~~~~~~~~~~~~~-  207 (366)
T 3k26_A          132 LSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINS---KRMMNAIKESYDYNP-  207 (366)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCS---HHHHHHHHHHHTCCG-
T ss_pred             EEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCC---CccccccceeEEecC-
Confidence            9999999999999999887776643357999999999999999999999999999999863   221111110000000 


Q ss_pred             ceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec
Q 007283          284 DMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ  363 (609)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~  363 (609)
                              ....+...    ....     .........+|...|.+++++   +.++++++.|+.|++|+..........
T Consensus       208 --------~~~~~~~~----~~~~-----~~~~~~~~~~~~~~v~~~~~~---~~~l~~~~~d~~i~~wd~~~~~~~~~~  267 (366)
T 3k26_A          208 --------NKTNRPFI----SQKI-----HFPDFSTRDIHRNYVDCVRWL---GDLILSKSCENAIVCWKPGKMEDDIDK  267 (366)
T ss_dssp             --------GGCSSCCC----CEEE-----CCCSEEECSSCSSCCCEEEEE---TTEEEEECSSSEEEEEEESSTTCCGGG
T ss_pred             --------CCCccccc----ceee-----ccCccccccCCcceEEEEEEc---CCEEEEEecCCEEEEEeCCCccccccc
Confidence                    00000000    0000     000011223355555555554   245555555555555543211000000


Q ss_pred             cccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEE
Q 007283          364 RKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVST  443 (609)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (609)
                                                                                                      
T Consensus       268 --------------------------------------------------------------------------------  267 (366)
T 3k26_A          268 --------------------------------------------------------------------------------  267 (366)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC--CCEEEEEeCCCeEEEEEcc
Q 007283          444 INLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD--VSMFASGDVNREAIVWDRV  521 (609)
Q Consensus       444 ~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~--~~~l~s~s~d~~v~iwd~~  521 (609)
                                 +.+.         .          ........+..|...|.+++|+|+  +.++++|+.|+.|++||+.
T Consensus       268 -----------~~~~---------~----------~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          268 -----------IKPS---------E----------SNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             -----------CCTT---------C----------CCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECC
T ss_pred             -----------cccC---------C----------cchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECC
Confidence                       0000         0          000123456789999999999999  9999999999999999987


Q ss_pred             CCce---EEeeecCC--CCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          522 SREV---KLKNMLYH--TARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       522 ~~~~---~~~~~~~h--~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      +.+.   ....+..|  ...|++++|+|++++|++++.||.|++||+.
T Consensus       318 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          318 VEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            7542   22345566  7899999999999999999999999999974

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.1e-33  Score=280.62  Aligned_cols=204  Identities=18%  Similarity=0.206  Sum_probs=174.2

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAF  130 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~  130 (609)
                      ..+.+|++.|++++|+|+|++||+++.||+|+|||+.+++. ...+..|...|.+++|+|++++|++++.+.   .+++|
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg---~i~iw  101 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGER-LGTLDGHTGTIWSIDVDCFTKYCVTGSADY---SIKLW  101 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSEEEEEETTT---EEEEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchh-hhhhhhcCCcEEEEEEcCCCCEEEEEeCCC---eEEEE
Confidence            45789999999999999999999999999999999988764 356788999999999999999999987643   57888


Q ss_pred             EcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-----CeEEEEeCCCCc-----------eeeeccCccc--ceE
Q 007283          131 MWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-----FLVNFYEGPPFK-----------FKLSHRGHSN--FVN  192 (609)
Q Consensus       131 ~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-----~~i~~~~~~~~~-----------~~~~~~~h~~--~v~  192 (609)
                      +.+.+..+..+. |...|.+++|+|++.. +++++.+     +.+.+|+.....           ....+..|..  .+.
T Consensus       102 d~~~~~~~~~~~-~~~~v~~~~~~~~~~~-l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          102 DVSNGQCVATWK-SPVPVKRVEFSPCGNY-FLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             ETTTCCEEEEEE-CSSCEEEEEECTTSSE-EEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             ECCCCcEEEEee-cCCCeEEEEEccCCCE-EEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            888888888777 8889999999999985 7777777     999999864332           2223344555  899


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          193 CVRFSPDGSKFISVSSDKKGIIYDGKT-ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       193 ~l~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +++|+|+++.|++++.|+.+.+||..+ .+.+..+   ..|...|.+++|+|++++|++++.|+.|++||+.
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~  248 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSI---DLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS  248 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEE---ecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence            999999999999999999999999988 5555444   3688999999999999999999999999999986

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.2e-33  Score=273.83  Aligned_cols=287  Identities=17%  Similarity=0.214  Sum_probs=230.0

Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA  257 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i  257 (609)
                      .+....+.+|...|++++| |++++|++++.|+.+++||..+++....+   ..|.+.|.+++|+|++++|++++.|+.+
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i   83 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVV---YTGQGFLNSVCYDSEKELLLFGGKDTMI   83 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEE---EECSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEe---ecCCccEEEEEECCCCCEEEEecCCCeE
Confidence            4566778999999999999 99999999999999999999887766555   3688999999999999999999999999


Q ss_pred             EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283          258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP  337 (609)
Q Consensus       258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  337 (609)
                      ++|++......                                              .....+.+|...|.++.+.   +
T Consensus        84 ~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~i~~~~~~---~  114 (313)
T 3odt_A           84 NGVPLFATSGE----------------------------------------------DPLYTLIGHQGNVCSLSFQ---D  114 (313)
T ss_dssp             EEEETTCCTTS----------------------------------------------CC-CEECCCSSCEEEEEEE---T
T ss_pred             EEEEeeecCCC----------------------------------------------CcccchhhcccCEEEEEec---C
Confidence            99998632111                                              1123456788899999883   4


Q ss_pred             CEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEee
Q 007283          338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVA  417 (609)
Q Consensus       338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (609)
                      ..+++++.|+.|++|+....            +                   ..                          
T Consensus       115 ~~l~~~~~d~~i~~~d~~~~------------~-------------------~~--------------------------  137 (313)
T 3odt_A          115 GVVISGSWDKTAKVWKEGSL------------V-------------------YN--------------------------  137 (313)
T ss_dssp             TEEEEEETTSEEEEEETTEE------------E-------------------EE--------------------------
T ss_pred             CEEEEEeCCCCEEEEcCCcE------------E-------------------Ee--------------------------
Confidence            69999999999999961100            0                   00                          


Q ss_pred             ccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEec-CCCceE
Q 007283          418 LHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEK-HRGAVS  495 (609)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~-h~~~i~  495 (609)
                                               ...+..++.+++++| ++..+++++.||.|++||..  ..  ...+.. |...|.
T Consensus       138 -------------------------~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~--~~~~~~~~~~~i~  188 (313)
T 3odt_A          138 -------------------------LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KV--IKTFSGIHNDVVR  188 (313)
T ss_dssp             -------------------------EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EE--EEEECSSCSSCEE
T ss_pred             -------------------------cccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ce--EEEEeccCcccEE
Confidence                                     001123466777777 99999999999999999932  22  234555 899999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEec
Q 007283          496 VIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKG  575 (609)
Q Consensus       496 ~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~  575 (609)
                      +++|+|++. +++++.|+.+++||+.+.+. +..+..|...|++++|+|++ .|++++.|+.|++||+....  ......
T Consensus       189 ~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~--~~~~~~  263 (313)
T 3odt_A          189 HLAVVDDGH-FISCSNDGLIKLVDMHTGDV-LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGS--LKQVIT  263 (313)
T ss_dssp             EEEEEETTE-EEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCC--EEEEEE
T ss_pred             EEEEcCCCe-EEEccCCCeEEEEECCchhh-hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCc--eeEEEe
Confidence            999999999 99999999999999887654 34567899999999999999 58899999999999997643  344556


Q ss_pred             cccCCeEEEEEcCCCeEEEEeCCCcEEEEEccC
Q 007283          576 AHLGGVYGLAFTDEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       576 ~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      .|...|++++|+++..+++++.|+.|++|++..
T Consensus       264 ~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~  296 (313)
T 3odt_A          264 LPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEK  296 (313)
T ss_dssp             CSSSCEEEEEECTTSCEEEEETTSCEEEEESCG
T ss_pred             ccCceEEEEEEccCCCEEEEeCCCcEEEEeCCC
Confidence            799999999999555588899999999999863

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=1.7e-33  Score=281.40  Aligned_cols=299  Identities=13%  Similarity=0.170  Sum_probs=226.7

Q ss_pred             eeccCcccceEEEEEcCCCCEE-EEEeC---CCcEEEEeCCCCccccccCcCCCCccceEEEEECCC---CCeEEEEeCC
Q 007283          182 LSHRGHSNFVNCVRFSPDGSKF-ISVSS---DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD---GKQVLTASAD  254 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg~~l-~s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd---~~~l~s~s~d  254 (609)
                      ..+.+|...|.+++|+|++..+ ++++.   |+.+++||..+++......  .+|...|.+++|+|+   +.+|++++.|
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~l~~~~~d   89 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLRE--IEKAKPIKCGTFGATSLQQRYLATGDFG   89 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEE--EEESSCEEEEECTTCCTTTCCEEEEETT
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceee--ecccCcEEEEEEcCCCCCCceEEEecCC
Confidence            4456799999999999999755 45555   8999999998877543332  268899999999999   6999999999


Q ss_pred             CcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEe-
Q 007283          255 KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVL-  333 (609)
Q Consensus       255 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~-  333 (609)
                      +.|++||+....                                                .....+.+|...|.++.+. 
T Consensus        90 g~i~iwd~~~~~------------------------------------------------~~~~~~~~~~~~v~~~~~~~  121 (357)
T 3i2n_A           90 GNLHIWNLEAPE------------------------------------------------MPVYSVKGHKEIINAIDGIG  121 (357)
T ss_dssp             SCEEEECTTSCS------------------------------------------------SCSEEECCCSSCEEEEEEES
T ss_pred             CeEEEEeCCCCC------------------------------------------------ccEEEEEecccceEEEeecc
Confidence            999999986311                                                0112345688888888764 


Q ss_pred             ----cCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCC
Q 007283          334 ----NIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGS  409 (609)
Q Consensus       334 ----~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  409 (609)
                          ..++.++++++.|+.|++|+......         .+..+                   .....            
T Consensus       122 ~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~---------~~~~~-------------------~~~~~------------  161 (357)
T 3i2n_A          122 GLGIGEGAPEIVTGSRDGTVKVWDPRQKDD---------PVANM-------------------EPVQG------------  161 (357)
T ss_dssp             GGGCC-CCCEEEEEETTSCEEEECTTSCSS---------CSEEE-------------------CCCTT------------
T ss_pred             ccccCCCccEEEEEeCCCeEEEEeCCCCCC---------cceec-------------------cccCC------------
Confidence                24567999999999999998754210         00000                   00000            


Q ss_pred             CCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE----EcCCCCEEEEEeCCCcEEEEEecCCeeeeeE
Q 007283          410 QPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA----IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEA  485 (609)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~  485 (609)
                                                         .....+.+++    ++|+++++++|+.||.|++||++.+..   .
T Consensus       162 -----------------------------------~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~  203 (357)
T 3i2n_A          162 -----------------------------------ENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL---R  203 (357)
T ss_dssp             -----------------------------------SCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE---E
T ss_pred             -----------------------------------CCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce---e
Confidence                                               0001244444    789999999999999999999987764   3


Q ss_pred             EEecCCCceEEEEECC---CCCEEEEEeCCCeEEEEEccCCceE----EeeecCCCCceEEEEECCCCc-EEEEEeCCCe
Q 007283          486 VLEKHRGAVSVIRYSP---DVSMFASGDVNREAIVWDRVSREVK----LKNMLYHTARINCLAWSPNNS-MVATGSLDTC  557 (609)
Q Consensus       486 ~~~~h~~~i~~v~~s~---~~~~l~s~s~d~~v~iwd~~~~~~~----~~~~~~h~~~i~~l~~s~d~~-~l~s~s~D~~  557 (609)
                      ....|...|.+++|+|   ++.++++++.|+.+++||+.+.+..    ...+..|...|++++|+|+++ +|++++.||.
T Consensus       204 ~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~  283 (357)
T 3i2n_A          204 WETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG  283 (357)
T ss_dssp             EEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE
T ss_pred             eecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc
Confidence            3467899999999999   9999999999999999998654321    112347999999999999998 8999999999


Q ss_pred             EEEEEcCCCCCc-----------------ceeEeccccCCeEEEEEc-CCCeEE-EEeCCCcEEEEEccC
Q 007283          558 VIIYEIDKPASS-----------------RMTIKGAHLGGVYGLAFT-DEHSVV-SSGEDACVRVWRLTP  608 (609)
Q Consensus       558 v~vw~~~~~~~~-----------------~~~~~~~h~~~v~~~~~s-~~~~l~-s~s~D~~i~~W~~~~  608 (609)
                      |++||+......                 .+....+|...|++++|+ ++++|+ |++.|+.|++|++..
T Consensus       284 i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          284 LHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             EEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             EEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            999998743211                 244466899999999999 677787 899999999999863

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.8e-33  Score=272.01  Aligned_cols=288  Identities=21%  Similarity=0.230  Sum_probs=235.2

Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      ....+.+|.+.|.+++| |++.. +++++.|+.+++|+....+....+..|...|.+++|+|++++|++++.|+.+.+|+
T Consensus        10 ~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A           10 LSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            45678999999999999 88875 99999999999999988888888889999999999999999999999999999999


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL  296 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (609)
                      ..............+|...|.+++|  ++.+|++++.|+.|++||..     +..                         
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d~~-----~~~-------------------------  135 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWKEG-----SLV-------------------------  135 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETT-----EEE-------------------------
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEcCC-----cEE-------------------------
Confidence            8765433222333579999999999  67899999999999999821     111                         


Q ss_pred             EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283          297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI  376 (609)
Q Consensus       297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~  376 (609)
                                           ..+..|...+.++.+.+.++..+++++.|+.|++|+....                   
T Consensus       136 ---------------------~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------------------  175 (313)
T 3odt_A          136 ---------------------YNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQNDKV-------------------  175 (313)
T ss_dssp             ---------------------EEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTEE-------------------
T ss_pred             ---------------------EecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecCce-------------------
Confidence                                 1234577888888888766789999999999999962110                   


Q ss_pred             CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                                  +..+.                                                  ..+...+.+++++
T Consensus       176 ------------~~~~~--------------------------------------------------~~~~~~i~~~~~~  193 (313)
T 3odt_A          176 ------------IKTFS--------------------------------------------------GIHNDVVRHLAVV  193 (313)
T ss_dssp             ------------EEEEC--------------------------------------------------SSCSSCEEEEEEE
T ss_pred             ------------EEEEe--------------------------------------------------ccCcccEEEEEEc
Confidence                        00000                                                  0012457888999


Q ss_pred             CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc
Q 007283          457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR  536 (609)
Q Consensus       457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~  536 (609)
                      |++. +++|+.||.|++||++.+..  ...+.+|.+.|.+++|+|++ .+++++.|+.+++||+.+.+. ...+..|...
T Consensus       194 ~~~~-~~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~-~~~~~~~~~~  268 (313)
T 3odt_A          194 DDGH-FISCSNDGLIKLVDMHTGDV--LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSL-KQVITLPAIS  268 (313)
T ss_dssp             ETTE-EEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCE-EEEEECSSSC
T ss_pred             CCCe-EEEccCCCeEEEEECCchhh--hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCce-eEEEeccCce
Confidence            9998 99999999999999987654  45678899999999999999 689999999999999887764 3456789999


Q ss_pred             eEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          537 INCLAWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       537 i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      |++++|+|+++ +++++.|+.|++|++...
T Consensus       269 i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~  297 (313)
T 3odt_A          269 IWSVDCMSNGD-IIVGSSDNLVRIFSQEKS  297 (313)
T ss_dssp             EEEEEECTTSC-EEEEETTSCEEEEESCGG
T ss_pred             EEEEEEccCCC-EEEEeCCCcEEEEeCCCC
Confidence            99999999999 567999999999998753

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.9e-33  Score=285.57  Aligned_cols=305  Identities=11%  Similarity=0.124  Sum_probs=234.9

Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc------eeeeccCcccceEEEEEcCC----C---CEEEE
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK------FKLSHRGHSNFVNCVRFSPD----G---SKFIS  205 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~------~~~~~~~h~~~v~~l~~s~d----g---~~l~s  205 (609)
                      ..+.+|...|.+++|+|  . .+++|+.|+.+++|+....+      ....+.+|...|++++|+|+    |   ++|++
T Consensus        10 ~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s   86 (397)
T 1sq9_A           10 NAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVAT   86 (397)
T ss_dssp             EESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEE
T ss_pred             hhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEE
Confidence            45679999999999999  3 69999999999999988776      67778899999999999999    9   99999


Q ss_pred             EeCCCcEEEEeCCCCcc-----ccccCcCCCC-----ccceEEEEEC----CCCCe-EEEEeCCCcEEEeecccCCC---
Q 007283          206 VSSDKKGIIYDGKTADK-----IGELSPEDGH-----KGSVYAVSWS----PDGKQ-VLTASADKSAKVWDISEDNH---  267 (609)
Q Consensus       206 ~~~d~~i~iwd~~~~~~-----~~~~~~~~~h-----~~~V~~l~~s----pd~~~-l~s~s~d~~i~iwd~~~~~~---  267 (609)
                      ++.|+.|++||..+++.     +..+.   +|     ...|.+++|+    |++.+ |++++.|+.|++||+.....   
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLD---LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEEC---CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EcCCCCEEEEEccCCcccccccceeec---ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999888775     55543   56     5899999999    99999 99999999999999863100   


Q ss_pred             CceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCC
Q 007283          268 GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDG  347 (609)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg  347 (609)
                      ++... +                 .....+.+.                ......|...|.++++++. + ++++++.|+
T Consensus       164 ~~~~~-~-----------------~~~~~~~~~----------------~~~~~~~~~~i~~~~~~~~-~-~l~~~~~dg  207 (397)
T 1sq9_A          164 SLTLN-W-----------------SPTLELQGT----------------VESPMTPSQFATSVDISER-G-LIATGFNNG  207 (397)
T ss_dssp             HTTTC-C-----------------CCEEEEEEE----------------ECCSSSSCCCCCEEEECTT-S-EEEEECTTS
T ss_pred             cceee-c-----------------cCcceeeee----------------eccccCCCCCceEEEECCC-c-eEEEEeCCC
Confidence            00000 0                 000000000                0001347888999998764 4 999999999


Q ss_pred             cEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEE
Q 007283          348 LIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVS  427 (609)
Q Consensus       348 ~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  427 (609)
                      .|++|+......                             +..+.                                  
T Consensus       208 ~i~i~d~~~~~~-----------------------------~~~~~----------------------------------  224 (397)
T 1sq9_A          208 TVQISELSTLRP-----------------------------LYNFE----------------------------------  224 (397)
T ss_dssp             EEEEEETTTTEE-----------------------------EEEEE----------------------------------
T ss_pred             cEEEEECCCCce-----------------------------eEEEe----------------------------------
Confidence            999997643210                             00000                                  


Q ss_pred             ecccEEEeeCCeeeEEecc---CCceeEEEEcCCCCEEEEEeCC---CcEEEEEecCCeeeeeEEEec------------
Q 007283          428 TDSGVVLLRGAEVVSTINL---RFPVTASAIAPDGSEAIIGSQD---GKLRVYSIRGDTLTEEAVLEK------------  489 (609)
Q Consensus       428 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~g~~l~~gs~d---g~i~iw~~~~~~~~~~~~~~~------------  489 (609)
                               .     ...+   ..++.+++++|+++++++|+.|   +.|++||+..+..  ...+.+            
T Consensus       225 ---------~-----~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~  288 (397)
T 1sq9_A          225 ---------S-----QHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEF  288 (397)
T ss_dssp             ---------C-----CC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCB
T ss_pred             ---------c-----cccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc--cceeccCccccccccccc
Confidence                     0     0001   2458889999999999999999   9999999987654  345666            


Q ss_pred             -CCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeec------CC---------------CCceEEEEECCCC-
Q 007283          490 -HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML------YH---------------TARINCLAWSPNN-  546 (609)
Q Consensus       490 -h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~------~h---------------~~~i~~l~~s~d~-  546 (609)
                       |...|.+++|+|++.+|++++.|+.|++||+.+.+.. ..+.      .|               ...|++++|+|++ 
T Consensus       289 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~  367 (397)
T 1sq9_A          289 AHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERI-TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGW  367 (397)
T ss_dssp             SBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEE-EEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTT
T ss_pred             ccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCcee-EEEecccCcccchhhhhccccccccccCCceeEEEeccccc
Confidence             9999999999999999999999999999999876543 3455      66               8999999999998 


Q ss_pred             ---------cEEEEEeCCCeEEEEEcCC
Q 007283          547 ---------SMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       547 ---------~~l~s~s~D~~v~vw~~~~  565 (609)
                               ++|++++.||.|++|++..
T Consensus       368 ~~~~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          368 RSGMGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             SBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             cccccccccceEEEecCCCcEEEEEcCC
Confidence                     7999999999999999865

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.6e-33  Score=284.76  Aligned_cols=292  Identities=19%  Similarity=0.268  Sum_probs=225.0

Q ss_pred             ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283           54 GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD  133 (609)
Q Consensus        54 ~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  133 (609)
                      .+|.+.+.+..+++++..+++++.|++|+||++.+++.... +.                                    
T Consensus        88 ~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-~~------------------------------------  130 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-AE------------------------------------  130 (401)
T ss_dssp             TTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-EE------------------------------------
T ss_pred             CCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-ee------------------------------------
Confidence            36766654444444456688888999999999987653221 11                                    


Q ss_pred             CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283          134 SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI  213 (609)
Q Consensus       134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~  213 (609)
                              ..|...|.+++|+|++. .+++|+.|+.+++|+....+....+.+|...|.+++|  ++..|++++.|+.++
T Consensus       131 --------~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~  199 (401)
T 4aez_A          131 --------TDESTYVASVKWSHDGS-FLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIH  199 (401)
T ss_dssp             --------CCTTCCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEE
T ss_pred             --------cCCCCCEEEEEECCCCC-EEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEE
Confidence                    12555677777777766 4788888899999999888888888899999999999  456999999999999


Q ss_pred             EEeCCC-CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          214 IYDGKT-ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       214 iwd~~~-~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      +||.+. ...+..+   .+|.+.|.+++|+|++.+|++++.|+.|++||+..   ++..                     
T Consensus       200 i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~---~~~~---------------------  252 (401)
T 4aez_A          200 HHDVRIANHQIGTL---QGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARS---SIPK---------------------  252 (401)
T ss_dssp             EEETTSSSCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTC---SSEE---------------------
T ss_pred             EEecccCcceeeEE---cCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCC---CCcc---------------------
Confidence            999984 3334333   47999999999999999999999999999999862   1111                     


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe--cCCcEEEEecCccccceeccccccce
Q 007283          293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS--YDGLIVKWIQGIGYGGKLQRKENSQI  370 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s--~dg~i~~W~~~~~~~~~~~~~~~~~~  370 (609)
                                               ..+.+|...|.++++++.++.++++++  .|+.|++|+...+..           
T Consensus       253 -------------------------~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~-----------  296 (401)
T 4aez_A          253 -------------------------FTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR-----------  296 (401)
T ss_dssp             -------------------------EEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCE-----------
T ss_pred             -------------------------EEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCE-----------
Confidence                                     123457788999999876677888876  899999997643210           


Q ss_pred             eEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCce
Q 007283          371 KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPV  450 (609)
Q Consensus       371 ~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  450 (609)
                                                                                            ...+.....+
T Consensus       297 ----------------------------------------------------------------------~~~~~~~~~v  306 (401)
T 4aez_A          297 ----------------------------------------------------------------------VNTVDAGSQV  306 (401)
T ss_dssp             ----------------------------------------------------------------------EEEEECSSCE
T ss_pred             ----------------------------------------------------------------------EEEEeCCCcE
Confidence                                                                                  0011122357


Q ss_pred             eEEEEcCCCCEEEE--EeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE
Q 007283          451 TASAIAPDGSEAII--GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK  526 (609)
Q Consensus       451 ~~~~~sp~g~~l~~--gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~  526 (609)
                      .+++++|+++++++  |+.||.|++|++..+.......+.+|.+.|.+++|+|++.++++++.|+.+++||+.+++..
T Consensus       307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            88999999999999  55899999999998776666667899999999999999999999999999999998876543

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=4.8e-33  Score=282.51  Aligned_cols=310  Identities=16%  Similarity=0.138  Sum_probs=231.7

Q ss_pred             eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc------cccccCcCCCCccceEEEEECCC----C---Ce
Q 007283          181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD------KIGELSPEDGHKGSVYAVSWSPD----G---KQ  247 (609)
Q Consensus       181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~------~~~~~~~~~~h~~~V~~l~~spd----~---~~  247 (609)
                      ...+.+|...|++++|+|  ++|++++.|+.|++|+..+++      .+..+   .+|...|.+++|+|+    +   ++
T Consensus         9 ~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            9 ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSH---FVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEE---ECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEE---ecCCCcEEEEEEecccccCCccccE
Confidence            345779999999999999  799999999999999998877      34444   379999999999999    9   99


Q ss_pred             EEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCC----
Q 007283          248 VLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGH----  323 (609)
Q Consensus       248 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h----  323 (609)
                      |++++.|+.|++||+........                                            .....+.+|    
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~  119 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKK--------------------------------------------VIFEKLDLLDSDM  119 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCC--------------------------------------------EEEEEECCSCTTG
T ss_pred             EEEEcCCCCEEEEEccCCccccc--------------------------------------------ccceeeccccccc
Confidence            99999999999999863211000                                            001123345    


Q ss_pred             -CCCeEEEEEe----cCCCCE-EEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCC
Q 007283          324 -MKNVTALTVL----NIDPKV-ILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGD  397 (609)
Q Consensus       324 -~~~v~~~~~~----~~~~~~-~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~  397 (609)
                       ...|.+++++    + ++.. +++++.||.|++|+........    ....+. +  .....                 
T Consensus       120 ~~~~v~~~~~~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~-~--~~~~~-----------------  174 (397)
T 1sq9_A          120 KKHSFWALKWGASNDR-LLSHRLVATDVKGTTYIWKFHPFADES----NSLTLN-W--SPTLE-----------------  174 (397)
T ss_dssp             GGSCEEEEEEECCC-----CEEEEEEETTSCEEEEEEESSSSHH----HHTTTC-C--CCEEE-----------------
T ss_pred             CCCcEEEEEEeeccCC-CCceEEEEEeCCCcEEEEeCCcccccc----ccceee-c--cCcce-----------------
Confidence             5789999988    4 4567 9999999999999765410000    000000 0  00000                 


Q ss_pred             ccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec
Q 007283          398 QCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR  477 (609)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~  477 (609)
                                      +.           ..           ......+...+.+++++|++ ++++|+.||.|++||++
T Consensus       175 ----------------~~-----------~~-----------~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~  215 (397)
T 1sq9_A          175 ----------------LQ-----------GT-----------VESPMTPSQFATSVDISERG-LIATGFNNGTVQISELS  215 (397)
T ss_dssp             ----------------EE-----------EE-----------ECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETT
T ss_pred             ----------------ee-----------ee-----------eccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECC
Confidence                            00           00           00000123468899999999 99999999999999998


Q ss_pred             CCeeeeeEEEec---C---CCceEEEEECCCCCEEEEEeCC---CeEEEEEccCCceEEeeecC-------------CCC
Q 007283          478 GDTLTEEAVLEK---H---RGAVSVIRYSPDVSMFASGDVN---REAIVWDRVSREVKLKNMLY-------------HTA  535 (609)
Q Consensus       478 ~~~~~~~~~~~~---h---~~~i~~v~~s~~~~~l~s~s~d---~~v~iwd~~~~~~~~~~~~~-------------h~~  535 (609)
                      .+..  ...+..   |   ...|.+++|+|++.++++++.|   +.+++||+.+.+.. ..+..             |..
T Consensus       216 ~~~~--~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  292 (397)
T 1sq9_A          216 TLRP--LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERI-GSLSVPTHSSQASLGEFAHSS  292 (397)
T ss_dssp             TTEE--EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEE-EEECBC--------CCBSBSS
T ss_pred             CCce--eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCccc-ceeccCcccccccccccccCC
Confidence            7654  345667   8   9999999999999999999999   99999998776543 34556             999


Q ss_pred             ceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEec------cc---------------cCCeEEEEEc-CC----
Q 007283          536 RINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKG------AH---------------LGGVYGLAFT-DE----  589 (609)
Q Consensus       536 ~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~------~h---------------~~~v~~~~~s-~~----  589 (609)
                      .|++++|+|++++|++++.|+.|++||+....  ......      +|               ...|++++|+ ++    
T Consensus       293 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~  370 (397)
T 1sq9_A          293 WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE--RITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSG  370 (397)
T ss_dssp             CEEEEEECSSSSEEEEEETTSEEEEEETTTTE--EEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBS
T ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEcCCCc--eeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccc
Confidence            99999999999999999999999999997643  233334      56               8999999999 44    


Q ss_pred             ------CeEEEEeCCCcEEEEEccC
Q 007283          590 ------HSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       590 ------~~l~s~s~D~~i~~W~~~~  608 (609)
                            ++|++++.|+.|++|++..
T Consensus       371 ~~~~~~~~l~s~~~dg~i~iw~~~~  395 (397)
T 1sq9_A          371 MGADLNESLCCVCLDRSIRWFREAG  395 (397)
T ss_dssp             TTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred             ccccccceEEEecCCCcEEEEEcCC
Confidence                  6999999999999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.6e-34  Score=291.26  Aligned_cols=322  Identities=12%  Similarity=0.143  Sum_probs=224.2

Q ss_pred             cCceeEEeecCCCCeEEEe-CCCEEEEEeCCCC--ccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc--
Q 007283           16 RGRGILISGHPKSNSILYT-NGRSVIILDLSNP--LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH--   90 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~--~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~--   90 (609)
                      .+....++++|+|+.|++. .++.+.||++.++  +....+.+|.+.|++++|+|+|++||+++.|++|+|||+.+++  
T Consensus        11 ~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~   90 (377)
T 3dwl_C           11 PKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTW   90 (377)
T ss_dssp             SSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CC
T ss_pred             CCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCce
Confidence            4556689999999999887 4689999999887  6677789999999999999999999999999999999998765  


Q ss_pred             eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC---eeEEEec-CCccEEEEEEeeCCCeEEEEecC
Q 007283           91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT---NVGEFDG-HSRRVLSCAFKPSRPFRIATCGE  166 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-h~~~v~~~~~~p~~~~~i~t~~~  166 (609)
                      .....+..|...|.+++|+||+++|++++.+.   .+++|+.+.+.   ....+.+ |...|.+++|+|++. .+++++.
T Consensus        91 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~~~~~  166 (377)
T 3dwl_C           91 KQTLVLLRLNRAATFVRWSPNEDKFAVGSGAR---VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV-LLAAGCA  166 (377)
T ss_dssp             CCEEECCCCSSCEEEEECCTTSSCCEEEESSS---CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS-EEEEEES
T ss_pred             eeeeEecccCCceEEEEECCCCCEEEEEecCC---eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC-EEEEEeC
Confidence            12345667889999999999999999887644   35666666554   3667777 999999999999987 5999999


Q ss_pred             CCeEEEEeCC------------------CCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc----cc
Q 007283          167 DFLVNFYEGP------------------PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK----IG  224 (609)
Q Consensus       167 d~~i~~~~~~------------------~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~----~~  224 (609)
                      |+.+++||..                  ..+....+ +|...|.+++|+|+|++|++++.|+.|++||..+++.    +.
T Consensus       167 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~  245 (377)
T 3dwl_C          167 DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALI  245 (377)
T ss_dssp             SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEECC
T ss_pred             CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCcceeeE
Confidence            9999999974                  23455556 8999999999999999999999999999999998876    44


Q ss_pred             ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCc----------cceEEEEEEcCC
Q 007283          225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV----------DDMLVGCLWQND  294 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~  294 (609)
                      .+   .+|...|.+++|+|++++|++++.|+.+ +|+..... .+....+........          ........+.. 
T Consensus       246 ~~---~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  319 (377)
T 3dwl_C          246 TV---KLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESG-WAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTA-  319 (377)
T ss_dssp             CE---ECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC----CCSBCCCSCCCCCCBSSSSSBCCCCCC---------
T ss_pred             ee---cCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCc-eEEEeeeccccccccccccccccccccccccccccc-
Confidence            44   4789999999999999999999866655 66654211 111111111100000          00000000000 


Q ss_pred             eEEEEEcCCcEEEEeCCCC-CCCceeeeCCCCCeEEEEEecCCCC---EEEEEecCCcEEEEec
Q 007283          295 FLVIVSLGGTISIFSANDL-EKSPLQLSGHMKNVTALTVLNIDPK---VILSSSYDGLIVKWIQ  354 (609)
Q Consensus       295 ~~~~~~~~g~i~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~---~~~t~s~dg~i~~W~~  354 (609)
                            .....+..+.... .........|...|.++.+.+..+.   .++||+.||.|++|++
T Consensus       320 ------~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          320 ------LRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -----------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ------ccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                  0000000000000 0111223569999999997754434   6999999999999963

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=3.5e-33  Score=280.84  Aligned_cols=316  Identities=17%  Similarity=0.198  Sum_probs=243.5

Q ss_pred             CcCceeEEeecCCCCeEEEe-CCCEEEEEeCCCCc--cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 007283           15 ERGRGILISGHPKSNSILYT-NGRSVIILDLSNPL--QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV   91 (609)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~--~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~   91 (609)
                      +.+....+.++|+|+.|++. .++.+.+|++.+++  ....+.+|.+.|++++|+|+|++|++++.|++|++||+.+++.
T Consensus         7 ~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~   86 (372)
T 1k8k_C            7 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   86 (372)
T ss_dssp             CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCee
Confidence            45566799999999999887 56899999998886  6677889999999999999999999999999999999987653


Q ss_pred             ee-EEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe---eEE-EecCCccEEEEEEeeCCCeEEEEecC
Q 007283           92 LK-KEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN---VGE-FDGHSRRVLSCAFKPSRPFRIATCGE  166 (609)
Q Consensus        92 ~~-~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~h~~~v~~~~~~p~~~~~i~t~~~  166 (609)
                      .. ..+..|...|.+++|+|++++|++++.+.   .+++|+++....   ... ..+|...|.+++|+|++. .+++++.
T Consensus        87 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~---~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~  162 (372)
T 1k8k_C           87 KPTLVILRINRAARCVRWAPNEKKFAVGSGSR---VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAGSC  162 (372)
T ss_dssp             EEEEECCCCSSCEEEEEECTTSSEEEEEETTS---SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEEET
T ss_pred             eeeEEeecCCCceeEEEECCCCCEEEEEeCCC---EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEEcC
Confidence            22 23456788999999999999999887543   467888877653   223 367899999999999987 4999999


Q ss_pred             CCeEEEEeC------------------CCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCc
Q 007283          167 DFLVNFYEG------------------PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSP  228 (609)
Q Consensus       167 d~~i~~~~~------------------~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~  228 (609)
                      |+.+++||.                  +..+....+.+|...|.+++|+|++++|++++.|+.+++||.++++.+..+. 
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-  241 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLA-  241 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEE-
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEc-
Confidence            999999994                  3567777788999999999999999999999999999999999888777663 


Q ss_pred             CCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCce--EEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEE
Q 007283          229 EDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKL--KKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTIS  306 (609)
Q Consensus       229 ~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  306 (609)
                        .|...|.+++|+|++++|+++ .|+.|++|++.... +..  ...+.....                 ........++
T Consensus       242 --~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~-~~~~~~~~~~~~~~-----------------~~~~~~~~~~  300 (372)
T 1k8k_C          242 --SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAA-GKLSFGGRLDVPKQ-----------------SSQRGLTARE  300 (372)
T ss_dssp             --CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTT-TEEEECCCCCCC-------------------------CHHH
T ss_pred             --cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcC-ceEEEeeccCcccc-----------------chhhhcchhh
Confidence              688899999999999988887 89999999986410 211  111110000                 0001112223


Q ss_pred             EEeCCCCC-CCc------eee-eCCCCCeEEEEEecCCC---CEEEEEecCCcEEEEecCc
Q 007283          307 IFSANDLE-KSP------LQL-SGHMKNVTALTVLNIDP---KVILSSSYDGLIVKWIQGI  356 (609)
Q Consensus       307 ~~~~~~~~-~~~------~~~-~~h~~~v~~~~~~~~~~---~~~~t~s~dg~i~~W~~~~  356 (609)
                      +|...+.. ...      ..+ .+|...|.++++++.++   .+++|++.||.|++|+...
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          301 RFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             HHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             hhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecC
Confidence            33111100 010      223 48999999999886666   8999999999999998754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.6e-33  Score=282.45  Aligned_cols=296  Identities=16%  Similarity=0.225  Sum_probs=228.5

Q ss_pred             ccCcccceEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCccccccCcC--CCCccceEEEEECCC----CCeEEEEeC
Q 007283          184 HRGHSNFVNCVRFSPD----GSKFISVSSDKKGIIYDGKTADKIGELSPE--DGHKGSVYAVSWSPD----GKQVLTASA  253 (609)
Q Consensus       184 ~~~h~~~v~~l~~s~d----g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~h~~~V~~l~~spd----~~~l~s~s~  253 (609)
                      ..+|...|++++|+|+    ...+++++.++.+++||..+++.+..+...  ..|.+.|.+++|+|+    +++|++++.
T Consensus        14 ~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~   93 (366)
T 3k26_A           14 KEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGS   93 (366)
T ss_dssp             ECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEET
T ss_pred             ecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecC
Confidence            4589999999999984    445666777779999999887766554321  236788999999999    679999999


Q ss_pred             CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEe
Q 007283          254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVL  333 (609)
Q Consensus       254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~  333 (609)
                      |+.|++||+..   ++..                                              ..+.+|...|.+++++
T Consensus        94 dg~i~v~d~~~---~~~~----------------------------------------------~~~~~~~~~i~~~~~~  124 (366)
T 3k26_A           94 RGIIRIINPIT---MQCI----------------------------------------------KHYVGHGNAINELKFH  124 (366)
T ss_dssp             TCEEEEECTTT---CCEE----------------------------------------------EEEESCCSCEEEEEEC
T ss_pred             CCEEEEEEchh---ceEe----------------------------------------------eeecCCCCcEEEEEEC
Confidence            99999999862   1111                                              2245688899999998


Q ss_pred             cCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCce
Q 007283          334 NIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKD  413 (609)
Q Consensus       334 ~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~  413 (609)
                      +.++.++++++.||.|++|+...+....                             .+..                   
T Consensus       125 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~-----------------------------~~~~-------------------  156 (366)
T 3k26_A          125 PRDPNLLLSVSKDHALRLWNIQTDTLVA-----------------------------IFGG-------------------  156 (366)
T ss_dssp             SSCTTEEEEEETTSCEEEEETTTTEEEE-----------------------------EECS-------------------
T ss_pred             CCCCCEEEEEeCCCeEEEEEeecCeEEE-----------------------------Eecc-------------------
Confidence            6567899999999999999864321000                             0000                   


Q ss_pred             eEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeee----------
Q 007283          414 LSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE----------  483 (609)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~----------  483 (609)
                                                   ...+...+.+++++|+++++++|+.||.|++||++.+....          
T Consensus       157 -----------------------------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~  207 (366)
T 3k26_A          157 -----------------------------VEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNP  207 (366)
T ss_dssp             -----------------------------TTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCG
T ss_pred             -----------------------------cccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecC
Confidence                                         00123458899999999999999999999999997653210          


Q ss_pred             ----------------eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce-------------EEeeecCCC
Q 007283          484 ----------------EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV-------------KLKNMLYHT  534 (609)
Q Consensus       484 ----------------~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~-------------~~~~~~~h~  534 (609)
                                      ......|...|.+++|+  +.++++++.|+.+++||+.+...             .+..+..|.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (366)
T 3k26_A          208 NKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ  285 (366)
T ss_dssp             GGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred             CCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence                            11233499999999998  77999999999999999876432             244566799


Q ss_pred             CceEEEEECCC--CcEEEEEeCCCeEEEEEcCCCCCc--ceeEeccc--cCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          535 ARINCLAWSPN--NSMVATGSLDTCVIIYEIDKPASS--RMTIKGAH--LGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       535 ~~i~~l~~s~d--~~~l~s~s~D~~v~vw~~~~~~~~--~~~~~~~h--~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ..|++++|+|+  +++|++|+.||.|++||+......  ......+|  ...|++++|+ ++++|++++.|+.|++|++.
T Consensus       286 ~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          286 CDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            99999999999  999999999999999999764311  22344566  7999999999 78899999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=2.7e-33  Score=287.73  Aligned_cols=296  Identities=17%  Similarity=0.138  Sum_probs=214.1

Q ss_pred             cccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCce-eeEEEeecccceeEEEECC-CCCEEEEEECCCCcceEEE
Q 007283           53 YGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHV-LKKEFRVLSGRIDDLQWSP-DGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~-~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~  129 (609)
                      ..+|...|+|++|+| ++++||+|+.||+|+|||+.+++. ....+.+|.+.|.+++|+| |+.+|++++.+.   .+++
T Consensus       115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~---~v~i  191 (435)
T 4e54_B          115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEG---TTRL  191 (435)
T ss_dssp             EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSS---CEEE
T ss_pred             CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCC---EEEE
Confidence            457888999999999 578999999999999999987653 2234567899999999998 688999887544   4778


Q ss_pred             EEcCCCCeeEEEec--CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCC-EEEEE
Q 007283          130 FMWDSGTNVGEFDG--HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS-KFISV  206 (609)
Q Consensus       130 ~~~~~~~~~~~~~~--h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~  206 (609)
                      |+++.+........  +...+.+++|+|++.. |++|+.|+.|++||... +....+.+|...|++++|+|++. +|+++
T Consensus       192 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~g~~dg~i~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~  269 (435)
T 4e54_B          192 QDFKGNILRVFASSDTINIWFCSLDVSASSRM-VVTGDNVGNVILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATA  269 (435)
T ss_dssp             EETTSCEEEEEECCSSCSCCCCCEEEETTTTE-EEEECSSSBEEEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEE
T ss_pred             eeccCCceeEEeccCCCCccEEEEEECCCCCE-EEEEeCCCcEeeeccCc-ceeEEEecccceEEeeeecCCCceEEEEe
Confidence            87765433222233  3345788999999984 99999999999999764 45567889999999999999987 78899


Q ss_pred             eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCc-cce
Q 007283          207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV-DDM  285 (609)
Q Consensus       207 ~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~~  285 (609)
                      +.|+.|++||.++.+....+....+|...|++++|+|++.+|++++.|++|++||+...   .....+........ ...
T Consensus       270 s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~  346 (435)
T 4e54_B          270 SVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHLT  346 (435)
T ss_dssp             ETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSSC
T ss_pred             cCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEecccccccccce
Confidence            99999999999887766555444689999999999999999999999999999998742   22222211110000 000


Q ss_pred             EEEEEEc--CCeEEEEE------------cCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEE
Q 007283          286 LVGCLWQ--NDFLVIVS------------LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVK  351 (609)
Q Consensus       286 ~~~~~~~--~~~~~~~~------------~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~  351 (609)
                      .+.+.|.  ...++++.            .++.|++|+............+|...|.++..+.+++.+|++|+ |++|++
T Consensus       347 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~i  425 (435)
T 4e54_B          347 PIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILI  425 (435)
T ss_dssp             CCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEE
T ss_pred             eEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEE
Confidence            1111222  22333332            23579999876543222234578888888853344567888876 889999


Q ss_pred             EecCcc
Q 007283          352 WIQGIG  357 (609)
Q Consensus       352 W~~~~~  357 (609)
                      |+...+
T Consensus       426 W~~~~g  431 (435)
T 4e54_B          426 WSQQEA  431 (435)
T ss_dssp             CCCC--
T ss_pred             EECCcC
Confidence            987654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1e-32  Score=267.97  Aligned_cols=248  Identities=20%  Similarity=0.307  Sum_probs=204.0

Q ss_pred             ccCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCC--ccccccccCCCCcEEEEECCC--CCEEEEEeCCCcEEEEcCC
Q 007283           13 STERGRGILISGHPKSNSILYTN-GRSVIILDLSNP--LQVSIYGEHAYPATVARFSPN--GEWIASADVSGTVRIWGAH   87 (609)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~--~~~~~~~~h~~~v~~~~~sp~--g~~las~~~d~~i~vWd~~   87 (609)
                      ..|.+....++++|+|+.|+++. ++.++||++.+.  +....+.+|.+.|++++|+|+  |++||||+.|++|+|||+.
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~   85 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEE   85 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBS
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcC
Confidence            35677778999999999998875 689999999743  456678999999999999874  9999999999999999998


Q ss_pred             CCce-eeEEEeecccceeEEEECCC--CCEEEEEECCCCcceEEEEEcCCCC--eeEEEecCCccEEEEEEeeCC-----
Q 007283           88 NDHV-LKKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSLVRAFMWDSGT--NVGEFDGHSRRVLSCAFKPSR-----  157 (609)
Q Consensus        88 ~~~~-~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~p~~-----  157 (609)
                      +++. ....+..|...|.+++|+|+  |.+|++++.+.   .+++|++..+.  ....+.+|...|.+++|+|+.     
T Consensus        86 ~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~---~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           86 NGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDG---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             SSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             CCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCC---cEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            7642 23456778899999999998  88888887544   57788877653  245678999999999999973     


Q ss_pred             -------CeEEEEecCCCeEEEEeCCCCc----eeeeccCcccceEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCcc-
Q 007283          158 -------PFRIATCGEDFLVNFYEGPPFK----FKLSHRGHSNFVNCVRFSPDG---SKFISVSSDKKGIIYDGKTADK-  222 (609)
Q Consensus       158 -------~~~i~t~~~d~~i~~~~~~~~~----~~~~~~~h~~~v~~l~~s~dg---~~l~s~~~d~~i~iwd~~~~~~-  222 (609)
                             ...|++|+.|+.+++||....+    ....+.+|...|.+++|+|++   .+|++++.|++++|||...... 
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   2369999999999999976544    556788999999999999995   7899999999999999876431 


Q ss_pred             -ccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          223 -IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       223 -~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                       ........+|...|.+++|+|++++|++++.|++|++|+..
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence             11111123688899999999999999999999999999975

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=280.27  Aligned_cols=357  Identities=15%  Similarity=0.146  Sum_probs=233.7

Q ss_pred             EEEcCCCCeeEEEecCCccEEEEEEee-CCCeEEEEecCCCeEEEEeCCCCceeeec-------------cCcccceEEE
Q 007283          129 AFMWDSGTNVGEFDGHSRRVLSCAFKP-SRPFRIATCGEDFLVNFYEGPPFKFKLSH-------------RGHSNFVNCV  194 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~~i~t~~~d~~i~~~~~~~~~~~~~~-------------~~h~~~v~~l  194 (609)
                      +|.++.......+.+|.+.|.+++|+| ++. .+++|+.|+.+++|+....+....+             .+|...|.++
T Consensus        27 v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  105 (408)
T 4a11_B           27 VLGLELNKDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETV  105 (408)
T ss_dssp             HHTEEECTTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEE
T ss_pred             eeccccCcceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEE
Confidence            444555566677889999999999999 776 5999999999999998766544333             3699999999


Q ss_pred             EEcC-CCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC---CeEEEEeCCCcEEEeecccCCCCce
Q 007283          195 RFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG---KQVLTASADKSAKVWDISEDNHGKL  270 (609)
Q Consensus       195 ~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~---~~l~s~s~d~~i~iwd~~~~~~~~~  270 (609)
                      +|+| ++.+|++++.|+.+++||..+++....+    .+...+.++.|+|.+   .++++++.|+.|++||+...   +.
T Consensus       106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~  178 (408)
T 4a11_B          106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVF----NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG---SC  178 (408)
T ss_dssp             EECTTCTTCEEEEETTSEEEEEETTTTEEEEEE----ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS---CC
T ss_pred             EEccCCCcEEEEEeCCCeEEEeeCCCCccceec----cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc---ce
Confidence            9999 7779999999999999999998877665    366789999999854   49999999999999998621   11


Q ss_pred             EEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEE
Q 007283          271 KKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV  350 (609)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~  350 (609)
                                                                    ...+.+|...|.++++++....++++++.||.|+
T Consensus       179 ----------------------------------------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~  212 (408)
T 4a11_B          179 ----------------------------------------------SHILQGHRQEILAVSWSPRYDYILATASADSRVK  212 (408)
T ss_dssp             ----------------------------------------------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             ----------------------------------------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence                                                          1234468889999999876556899999999999


Q ss_pred             EEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecc
Q 007283          351 KWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDS  430 (609)
Q Consensus       351 ~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (609)
                      +|+.........         .+                   .......  ...             .            
T Consensus       213 i~d~~~~~~~~~---------~~-------------------~~~~~~~--~~~-------------~------------  237 (408)
T 4a11_B          213 LWDVRRASGCLI---------TL-------------------DQHNGKK--SQA-------------V------------  237 (408)
T ss_dssp             EEETTCSSCCSE---------EC-------------------CTTTTCS--CCC-------------T------------
T ss_pred             EEECCCCCcccc---------cc-------------------ccccccc--cee-------------e------------
Confidence            998754321000         00                   0000000  000             0            


Q ss_pred             cEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEE---EecCCCceEEEEECCCCCEEE
Q 007283          431 GVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV---LEKHRGAVSVIRYSPDVSMFA  507 (609)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~---~~~h~~~i~~v~~s~~~~~l~  507 (609)
                               ......+..++.+++++|+++++++|+.||.|++|++..+.......   .......+........+..++
T Consensus       238 ---------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (408)
T 4a11_B          238 ---------ESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFV  308 (408)
T ss_dssp             ---------TTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEE
T ss_pred             ---------ccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEE
Confidence                     00001123568899999999999999999999999998665321110   011112222233344556677


Q ss_pred             EEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc
Q 007283          508 SGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT  587 (609)
Q Consensus       508 s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s  587 (609)
                      .++.|+.+++||+.+.+. +..+.+|...|++++|+|++++|++++.||.|++|++.... ..... ..+. ....+...
T Consensus       309 ~~~~~~~i~v~d~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~-~~~~-~~~~~~~~  384 (408)
T 4a11_B          309 FVPYGSTIAVYTVYSGEQ-ITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYE-PVPDD-DETT-TKSQLNPA  384 (408)
T ss_dssp             EEEETTEEEEEETTTCCE-EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------
T ss_pred             EEecCCEEEEEECcCCcc-eeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC-ccCCC-CceE-eccccccc
Confidence            778899999999887665 44577899999999999999999999999999999997643 11111 1111 11122222


Q ss_pred             CCCeEEEEeCCCcEEEEEcc
Q 007283          588 DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       588 ~~~~l~s~s~D~~i~~W~~~  607 (609)
                      .+..+.+.+.|+.+++|+..
T Consensus       385 ~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          385 FEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             --------------------
T ss_pred             cceeecccCccCceeecCCc
Confidence            44556678899999999864

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=2.3e-33  Score=275.08  Aligned_cols=253  Identities=21%  Similarity=0.333  Sum_probs=194.9

Q ss_pred             CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      .+|.+.|++++|+|+|++|++++.|++|++||+...   ...                                      
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~---~~~--------------------------------------   48 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNG---GQI--------------------------------------   48 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETT---EEE--------------------------------------
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCC---CcE--------------------------------------
Confidence            489999999999999999999999999999997521   000                                      


Q ss_pred             CCCCCCCceeeeCCCCCeEEEEEec-CCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccce
Q 007283          310 ANDLEKSPLQLSGHMKNVTALTVLN-IDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNK  388 (609)
Q Consensus       310 ~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  388 (609)
                            ....+.+|...|.+++|.+ .++.++++|+.|++|++|+...+....        .                  
T Consensus        49 ------~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~--------~------------------   96 (316)
T 3bg1_A           49 ------LIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEK--------S------------------   96 (316)
T ss_dssp             ------EEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCE--------E------------------
T ss_pred             ------EEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceE--------E------------------
Confidence                  0123568999999999964 245799999999999999764321000        0                  


Q ss_pred             EEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC--CCEEEEEe
Q 007283          389 IWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD--GSEAIIGS  466 (609)
Q Consensus       389 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~~l~~gs  466 (609)
                                                                          .....+..++.+++++|+  +.++++|+
T Consensus        97 ----------------------------------------------------~~~~~h~~~V~~v~~~p~~~g~~lasgs  124 (316)
T 3bg1_A           97 ----------------------------------------------------HEHAGHDSSVNSVCWAPHDYGLILACGS  124 (316)
T ss_dssp             ----------------------------------------------------EEECCCSSCCCEEEECCTTTCSCEEEEC
T ss_pred             ----------------------------------------------------EEccCCCCceEEEEECCCCCCcEEEEEc
Confidence                                                                000012345889999998  88999999


Q ss_pred             CCCcEEEEEecCCe-eeeeEEEecCCCceEEEEECCC-----------------CCEEEEEeCCCeEEEEEccCCc--eE
Q 007283          467 QDGKLRVYSIRGDT-LTEEAVLEKHRGAVSVIRYSPD-----------------VSMFASGDVNREAIVWDRVSRE--VK  526 (609)
Q Consensus       467 ~dg~i~iw~~~~~~-~~~~~~~~~h~~~i~~v~~s~~-----------------~~~l~s~s~d~~v~iwd~~~~~--~~  526 (609)
                      .|++|++|+++.+. ......+.+|...|.+++|+|+                 +.+|++|+.|++|++||+....  ..
T Consensus       125 ~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~  204 (316)
T 3bg1_A          125 SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKE  204 (316)
T ss_dssp             SSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEE
T ss_pred             CCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccce
Confidence            99999999997652 2223455789999999999998                 4799999999999999986442  23


Q ss_pred             EeeecCCCCceEEEEECCCC----cEEEEEeCCCeEEEEEcCCCC--CcceeEeccccCCeEEEEEc-CCCeEEEEeCCC
Q 007283          527 LKNMLYHTARINCLAWSPNN----SMVATGSLDTCVIIYEIDKPA--SSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDA  599 (609)
Q Consensus       527 ~~~~~~h~~~i~~l~~s~d~----~~l~s~s~D~~v~vw~~~~~~--~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~  599 (609)
                      ...+.+|...|++++|+|++    ++||+++.|++|++|++....  ........+|...|++++|+ ++++|+++|.|+
T Consensus       205 ~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~  284 (316)
T 3bg1_A          205 EQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDN  284 (316)
T ss_dssp             EECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSS
T ss_pred             eeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCC
Confidence            45577899999999999987    899999999999999987521  11123345789999999999 778999999999


Q ss_pred             cEEEEEcc
Q 007283          600 CVRVWRLT  607 (609)
Q Consensus       600 ~i~~W~~~  607 (609)
                      +|++|++.
T Consensus       285 ~v~lw~~~  292 (316)
T 3bg1_A          285 KVTLWKES  292 (316)
T ss_dssp             CEEEEEEC
T ss_pred             eEEEEEEC
Confidence            99999975

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.6e-34  Score=286.98  Aligned_cols=324  Identities=11%  Similarity=0.123  Sum_probs=236.1

Q ss_pred             ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283           98 VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP  177 (609)
Q Consensus        98 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~  177 (609)
                      .....|.+++|||||+++++++++.   .++  +....   ..+++|...|.+++|+|++        .++.+.+|+.+.
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~---TV~--d~~~~---~~l~gh~~~v~~V~FsPdg--------~~~~~~~~~~~~   76 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDI---SIG--QPKYA---KDINCNSKNLFHVKEFPLE--------FENKLDFELAQQ   76 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSE---EEE--EECCC---SCCSSBGGGTEEEEEECCC--------CCCTTTTSCCCS
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCc---eee--ccccc---ceecCCCccEEEEEECCCC--------CcceEEEEeCCC
Confidence            3457899999999999999987654   344  43333   3457999999999999998        455555554331


Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCc-----cceEEEEECCCCCeEEEEe
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK-----GSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~-----~~V~~l~~spd~~~l~s~s  252 (609)
                      . ....+ +|..+|.+++|||||++||+++.||++++||.+.  .+..+   . |.     ..|.+++|||||++|++|+
T Consensus        77 ~-~~~~~-~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l---~-~~~~~~~~sv~svafSPDG~~LAsgs  148 (588)
T 2j04_A           77 N-GLLNS-QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNL---D-SKGNLSSRTYHCFEWNPIESSIVVGN  148 (588)
T ss_dssp             S-CSSTT-SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEEC---C-CSSCSTTTCEEEEEECSSSSCEEEEE
T ss_pred             c-eEeec-CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeec---c-CCCccccccEEEEEEcCCCCEEEEEc
Confidence            1 12222 5688999999999999999999999999999544  33333   2 33     3699999999999999999


Q ss_pred             CCCcEEEeecccCCCCc----eEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeE
Q 007283          253 ADKSAKVWDISEDNHGK----LKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVT  328 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~  328 (609)
                      .||+|++||+..+....    ...++.                                          ....+|...|.
T Consensus       149 ~DGtVkIWd~~~~~l~~~~~i~l~ti~------------------------------------------~~~~gh~~~V~  186 (588)
T 2j04_A          149 EDGELQFFSIRKNSENTPEFYFESSIR------------------------------------------LSDAGSKDWVT  186 (588)
T ss_dssp             TTSEEEEEECCCCTTTCCCCEEEEEEE------------------------------------------CSCTTCCCCEE
T ss_pred             CCCEEEEEECCCCccccccceeeeeee------------------------------------------cccccccccEE
Confidence            99999999986421000    011110                                          01246888999


Q ss_pred             EEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccC
Q 007283          329 ALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIG  408 (609)
Q Consensus       329 ~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  408 (609)
                      +++|++. +  +++++.|++|++|+...+....                                               
T Consensus       187 sVawSPd-g--Laass~D~tVrlWd~~~~~~~~-----------------------------------------------  216 (588)
T 2j04_A          187 HIVWYED-V--LVAALSNNSVFSMTVSASSHQP-----------------------------------------------  216 (588)
T ss_dssp             EEEEETT-E--EEEEETTCCEEEECCCSSSSCC-----------------------------------------------
T ss_pred             EEEEcCC-c--EEEEeCCCeEEEEECCCCcccc-----------------------------------------------
Confidence            9999864 3  8899999999999764321000                                               


Q ss_pred             CCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe--ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEE
Q 007283          409 SQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI--NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV  486 (609)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~  486 (609)
                                                     ....+  .++..|.+++|+  |+.+|+++ +++|++|++.++...  ..
T Consensus       217 -------------------------------~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~--~~  260 (588)
T 2j04_A          217 -------------------------------VSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSIS--SL  260 (588)
T ss_dssp             -------------------------------CEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEE--EE
T ss_pred             -------------------------------ceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEE--EE
Confidence                                           00000  122457888888  68899887 699999999877652  22


Q ss_pred             EecCCCceEEEEE--CCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          487 LEKHRGAVSVIRY--SPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       487 ~~~h~~~i~~v~~--s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      ..+|.+.|..++|  +||++.+++++.||+ ++|...                 .++|+||+..+++.  |+++++|+..
T Consensus       261 ~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d-----------------~~~~spd~~l~a~~--d~~v~lW~~~  320 (588)
T 2j04_A          261 KTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED-----------------ELHVTADNIIAPYL--EKKFKKWSTI  320 (588)
T ss_dssp             ECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS-----------------SEEEECCCSSHHHH--HHHHHHTTTT
T ss_pred             EcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec-----------------cEEECCCceEEEEc--CCEEEEEECC
Confidence            2289999999999  999999999999999 999753                 26699999988765  9999999875


Q ss_pred             CCCCcceeEeccccCCeEEEEEc-CCCeEEEEeC
Q 007283          565 KPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGE  597 (609)
Q Consensus       565 ~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~  597 (609)
                      ...   ..... +...|++++|| |+..+++++.
T Consensus       321 g~~---l~~~~-~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          321 WNE---FNNYE-TTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             TTS---SSSSC-CEEEEEEEEECTTSSEEEEEEE
T ss_pred             CCc---eeeec-cceEEEEEEECCCCCEEEEEEe
Confidence            321   22233 36779999999 6678887763

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.4e-31  Score=273.78  Aligned_cols=284  Identities=20%  Similarity=0.269  Sum_probs=218.9

Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283           60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG  139 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (609)
                      .+.++||++ ++||.|. |++|+|||..++++.. .                                           .
T Consensus       108 ~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~-~-------------------------------------------~  141 (420)
T 4gga_A          108 LNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQ-L-------------------------------------------L  141 (420)
T ss_dssp             CBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEE-E-------------------------------------------E
T ss_pred             ceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEE-E-------------------------------------------E
Confidence            566778765 4666654 7788888877765321 0                                           1


Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~  219 (609)
                      .+.+|...|++++|+|++.+ +++|+.|+.+++||..+++....+.+|...+.++.+  ++..|++|+.|+.+.+||...
T Consensus       142 ~~~~~~~~V~sv~fspdg~~-lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~--~~~~l~sgs~d~~i~~~d~~~  218 (420)
T 4gga_A          142 QMEQPGEYISSVAWIKEGNY-LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV  218 (420)
T ss_dssp             ECCSTTCCEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS
T ss_pred             EecCCCCcEEEEEECCCCCE-EEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEee--CCCEEEEEeCCCceeEeeecc
Confidence            23456777888888888874 889999999999999999999999999999998877  467999999999999999876


Q ss_pred             Cccc-cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283          220 ADKI-GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI  298 (609)
Q Consensus       220 ~~~~-~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (609)
                      .... ..+   .+|...+..+.|+|+++++++++.|+.+++|+.......                              
T Consensus       219 ~~~~~~~~---~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~------------------------------  265 (420)
T 4gga_A          219 AEHHVATL---SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG------------------------------  265 (420)
T ss_dssp             SSCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC------------------------------
T ss_pred             cceeeEEe---cccccceeeeeecCCCCeeeeeeccccceEEeecccccc------------------------------
Confidence            5433 223   479999999999999999999999999999998632100                              


Q ss_pred             EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEE--EecCCcEEEEecCccccceeccccccceeEeeee
Q 007283          299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS--SSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI  376 (609)
Q Consensus       299 ~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t--~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~  376 (609)
                                     .........|...|.++++++.++.++++  |+.|++|++|+..++..                 
T Consensus       266 ---------------~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~-----------------  313 (420)
T 4gga_A          266 ---------------WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-----------------  313 (420)
T ss_dssp             ---------------SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEE-----------------
T ss_pred             ---------------ceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccc-----------------
Confidence                           00112345688889999998777777765  45899999997643210                 


Q ss_pred             CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                                                                                      ...+.....+.++.++
T Consensus       314 ----------------------------------------------------------------~~~~~~~~~v~~~~~~  329 (420)
T 4gga_A          314 ----------------------------------------------------------------LSAVDAHSQVCSILWS  329 (420)
T ss_dssp             ----------------------------------------------------------------EEEEECSSCEEEEEEE
T ss_pred             ----------------------------------------------------------------ceeeccccceeeeeec
Confidence                                                                            0011112346777889


Q ss_pred             CCCCEEEEEe--CCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 007283          457 PDGSEAIIGS--QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR  523 (609)
Q Consensus       457 p~g~~l~~gs--~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~  523 (609)
                      |+++.+++++  .|+.|++||+.++..  ...+.+|.+.|.+|+|+|||++|+||+.|++|++||+...
T Consensus       330 ~~~~~lv~~sg~~d~~I~iwd~~~~~~--v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~  396 (420)
T 4gga_A          330 PHYKELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL  396 (420)
T ss_dssp             TTTTEEEEEECTTTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred             CCCCeEEEEEecCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence            9999988765  799999999987654  4678899999999999999999999999999999997653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.3e-31  Score=274.03  Aligned_cols=281  Identities=19%  Similarity=0.335  Sum_probs=218.6

Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCC
Q 007283          189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG  268 (609)
Q Consensus       189 ~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~  268 (609)
                      .+++.|+|++++ .||+|. |++|+|||..+++....+. ..+|...|++++|+|+|++|++|+.|++|++||+..   +
T Consensus       106 ~y~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~-~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~---~  179 (420)
T 4gga_A          106 YYLNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQ-MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ---Q  179 (420)
T ss_dssp             TTCBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEE-CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT---T
T ss_pred             ccceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEE-ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC---C
Confidence            357889999864 676664 8999999999998776553 247888999999999999999999999999999862   2


Q ss_pred             ceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCc
Q 007283          269 KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL  348 (609)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~  348 (609)
                      +..                                              ..+.+|...+.++.+.   +.++++|+.|+.
T Consensus       180 ~~~----------------------------------------------~~~~~h~~~v~~~s~~---~~~l~sgs~d~~  210 (420)
T 4gga_A          180 KRL----------------------------------------------RNMTSHSARVGSLSWN---SYILSSGSRSGH  210 (420)
T ss_dssp             EEE----------------------------------------------EEECCCSSCEEEEEEE---TTEEEEEETTSE
T ss_pred             cEE----------------------------------------------EEEeCCCCceEEEeeC---CCEEEEEeCCCc
Confidence            221                                              1234677888887764   478999999999


Q ss_pred             EEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEe
Q 007283          349 IVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVST  428 (609)
Q Consensus       349 i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  428 (609)
                      +++|+......         .+                   .                                      
T Consensus       211 i~~~d~~~~~~---------~~-------------------~--------------------------------------  224 (420)
T 4gga_A          211 IHHHDVRVAEH---------HV-------------------A--------------------------------------  224 (420)
T ss_dssp             EEEEETTSSSC---------EE-------------------E--------------------------------------
T ss_pred             eeEeeecccce---------ee-------------------E--------------------------------------
Confidence            99997532110         00                   0                                      


Q ss_pred             cccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCee--eeeEEEecCCCceEEEEECCCCC-E
Q 007283          429 DSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL--TEEAVLEKHRGAVSVIRYSPDVS-M  505 (609)
Q Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~--~~~~~~~~h~~~i~~v~~s~~~~-~  505 (609)
                                   ....+...+..+.++|+++++++++.|+.+++|+...+..  ........|.+.|.+++|+|++. +
T Consensus       225 -------------~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~  291 (420)
T 4gga_A          225 -------------TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV  291 (420)
T ss_dssp             -------------EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTE
T ss_pred             -------------EecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccE
Confidence                         0001223467788999999999999999999999876542  12345678999999999999764 4


Q ss_pred             EEE--EeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEe--CCCeEEEEEcCCCCCcceeEeccccCCe
Q 007283          506 FAS--GDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGS--LDTCVIIYEIDKPASSRMTIKGAHLGGV  581 (609)
Q Consensus       506 l~s--~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s--~D~~v~vw~~~~~~~~~~~~~~~h~~~v  581 (609)
                      +++  |+.|++|++||+.++.... .+ .+...+.++.|+|+++.+++++  .|++|+|||+...  ..+..+.+|.+.|
T Consensus       292 la~~~gs~D~~I~iwd~~t~~~~~-~~-~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~--~~v~~l~gH~~~V  367 (420)
T 4gga_A          292 LATGGGTSDRHIRIWNVCSGACLS-AV-DAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTM--AKVAELKGHTSRV  367 (420)
T ss_dssp             EEEEECTTTCEEEEEETTTTEEEE-EE-ECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTC--CEEEEECCCSSCE
T ss_pred             EEEEeecCCCEEEEEeCCccccce-ee-ccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCC--cEEEEEcCCCCCE
Confidence            444  5689999999998776533 23 3556899999999999988765  7999999999764  3455667899999


Q ss_pred             EEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          582 YGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       582 ~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ++++|+ ++++|+|+|.|++|++|++.
T Consensus       368 ~~l~~spdg~~l~S~s~D~tvriWdv~  394 (420)
T 4gga_A          368 LSLTMSPDGATVASAAADETLRLWRCF  394 (420)
T ss_dssp             EEEEECTTSSCEEEEETTTEEEEECCS
T ss_pred             EEEEEcCCCCEEEEEecCCeEEEEECC
Confidence            999999 78899999999999999984

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=2.2e-30  Score=294.63  Aligned_cols=514  Identities=12%  Similarity=0.098  Sum_probs=336.6

Q ss_pred             CceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC------CcEEEEcCCCCc
Q 007283           17 GRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS------GTVRIWGAHNDH   90 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d------~~i~vWd~~~~~   90 (609)
                      +......++|  +.|++.....+.+|++.+++.. .+.+|.+.+.+++|||||++||+++.+      .+|.+|++.+++
T Consensus        15 ~~~~~~~~S~--~~iaf~~~~~l~~~~~~gg~~~-~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~   91 (1045)
T 1k32_A           15 NLLLNPDIHG--DRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGE   91 (1045)
T ss_dssp             CCCEEEEEET--TEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTE
T ss_pred             ceEeCcEEeC--CEEEEEECCcEEEEECCCCcEE-EeeeCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCC
Confidence            3444666775  5888887789999999877654 577899999999999999999987543      379999988765


Q ss_pred             eeeEEEeecccce-------eEEEECCCCCEEEEEECCC--CcceEEEEEcCCC-CeeEEEecCCccEEEEEEeeCCCeE
Q 007283           91 VLKKEFRVLSGRI-------DDLQWSPDGLRIVACGDGK--GKSLVRAFMWDSG-TNVGEFDGHSRRVLSCAFKPSRPFR  160 (609)
Q Consensus        91 ~~~~~~~~~~~~v-------~~~~~spdg~~l~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~  160 (609)
                        ...+..|...+       ..++|||||+ ++.+++..  .....++|.|+.. .....+..+.  ...++|+| +  +
T Consensus        92 --~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~--~~~~~~sp-G--~  163 (1045)
T 1k32_A           92 --IKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP--ATHILFAD-G--R  163 (1045)
T ss_dssp             --EEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS--CSEEEEET-T--E
T ss_pred             --eEEcccCCCcccccccccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCC--cceeeeCC-C--E
Confidence              34567777777       8999999999 44444321  1122346666532 2223333332  34567999 6  5


Q ss_pred             EEEecC------------CCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CccccccC
Q 007283          161 IATCGE------------DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT-ADKIGELS  227 (609)
Q Consensus       161 i~t~~~------------d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~-~~~~~~~~  227 (609)
                      +++++.            +....+|..........+.+|...+.++.|+++ ..+++++.|+.+.||.... +.....+.
T Consensus       164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~  242 (1045)
T 1k32_A          164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHT  242 (1045)
T ss_dssp             EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECC
T ss_pred             EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEec
Confidence            777642            223455532221233345789999999999998 5666777889999997543 32333332


Q ss_pred             cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCC------ccceEEEEEEc---CCeEEE
Q 007283          228 PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGG------VDDMLVGCLWQ---NDFLVI  298 (609)
Q Consensus       228 ~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~---~~~~~~  298 (609)
                         .|. .+...+|+|||++|+.+. ++.|++|++.   ..++. .+.......      ....+..+.|+   +..++.
T Consensus       243 ---~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~---~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~  313 (1045)
T 1k32_A          243 ---SFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPD---TEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF  313 (1045)
T ss_dssp             ---CCC-SSCEEEEEESSSCEEEEE-TTEEEEECTT---TCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred             ---CCC-CcceeeEcCCCCEEEEEe-CCEEEEecCC---ceEee-eeccCcccccccccccccccceeeecCCCCCEEEE
Confidence               333 466789999999999885 8999999983   22232 322111000      00011223333   445666


Q ss_pred             EEcCCcEEEEeCCCCCCCceeeeCCCC-CeEEEEEecCCCCEEEEEecCCcEE-EEecCccccceeccccccceeEeee-
Q 007283          299 VSLGGTISIFSANDLEKSPLQLSGHMK-NVTALTVLNIDPKVILSSSYDGLIV-KWIQGIGYGGKLQRKENSQIKCFAA-  375 (609)
Q Consensus       299 ~~~~g~i~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~t~s~dg~i~-~W~~~~~~~~~~~~~~~~~~~~~~~-  375 (609)
                      ++ ++.+.+|+....  ....+..|.. .+..++|+  +++.++.++.++.+. +|+...+...... .+...+..+.+ 
T Consensus       314 ~~-~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~s--dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~S  387 (1045)
T 1k32_A          314 VS-RGQAFIQDVSGT--YVLKVPEPLRIRYVRRGGD--TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVD  387 (1045)
T ss_dssp             EE-TTEEEEECTTSS--BEEECSCCSCEEEEEECSS--SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEEC
T ss_pred             EE-cCEEEEEcCCCC--ceEEccCCCcceEEeeeEc--CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEEC
Confidence            55 788899886543  2344566777 77788776  567788888887787 7877654322222 22233444444 


Q ss_pred             -eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe-ccCCceeEE
Q 007283          376 -IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTAS  453 (609)
Q Consensus       376 -~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  453 (609)
                       .+..++.+..++.+++|++.....                                         .... .+...+..+
T Consensus       388 pDG~~la~~~~~~~v~~~d~~tg~~-----------------------------------------~~~~~~~~~~v~~~  426 (1045)
T 1k32_A          388 RNGKFAVVANDRFEIMTVDLETGKP-----------------------------------------TVIERSREAMITDF  426 (1045)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCE-----------------------------------------EEEEECSSSCCCCE
T ss_pred             CCCCEEEEECCCCeEEEEECCCCce-----------------------------------------EEeccCCCCCccce
Confidence             345566777777788777644321                                         1111 123456788


Q ss_pred             EEcCCCCEEEEEeCCC----------cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC
Q 007283          454 AIAPDGSEAIIGSQDG----------KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR  523 (609)
Q Consensus       454 ~~sp~g~~l~~gs~dg----------~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~  523 (609)
                      +++|||++++.++.++          .|++||+.++..   ..+..|...+..++|+|||++++.++.++..+.|+....
T Consensus       427 ~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~---~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~  503 (1045)
T 1k32_A          427 TISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI---FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL  503 (1045)
T ss_dssp             EECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE---EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred             EECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcE---EEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhcc
Confidence            9999999999887754          899999987652   456678888999999999999999998777777753221


Q ss_pred             ce------------------------------------------EEeeecCCCCceEEEEECCCCcEEEE----------
Q 007283          524 EV------------------------------------------KLKNMLYHTARINCLAWSPNNSMVAT----------  551 (609)
Q Consensus       524 ~~------------------------------------------~~~~~~~h~~~i~~l~~s~d~~~l~s----------  551 (609)
                      ..                                          .+..+..|...+..++++||++++++          
T Consensus       504 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~  583 (1045)
T 1k32_A          504 NFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAY  583 (1045)
T ss_dssp             CEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHH
T ss_pred             ccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCccccc
Confidence            11                                          01122346677999999999998875          


Q ss_pred             ---EeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEccC
Q 007283          552 ---GSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       552 ---~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~  608 (609)
                         ...+..|.+||+....  ...+ .   ..+.+++|| |++.|++++.| .+++|++..
T Consensus       584 ~~~~~~~~~l~~~d~~~~~--~~~l-~---~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~  637 (1045)
T 1k32_A          584 YQGAPEKGVLLKYDVKTRK--VTEV-K---NNLTDLRLSADRKTVMVRKDD-GKIYTFPLE  637 (1045)
T ss_dssp             HHCCCCCEEEEEEETTTCC--EEEE-E---EEEEEEEECTTSCEEEEEETT-SCEEEEESS
T ss_pred             ccccCCCceEEEEECCCCc--EEEe-e---cCcceEEECCCCCEEEEEcCC-cEEEEeCcc
Confidence               1234567777776533  1222 2   568899999 88899988877 899999854

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=6e-32  Score=275.30  Aligned_cols=312  Identities=18%  Similarity=0.250  Sum_probs=238.1

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEE------------eeccccee
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEF------------RVLSGRID  104 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~------------~~~~~~v~  104 (609)
                      .+.+|++...+....+.+|++.|++++|+| +|++||+++.||+|+|||+.+.+......            ..|...|.
T Consensus        24 ~~~v~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  103 (408)
T 4a11_B           24 TRRVLGLELNKDRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE  103 (408)
T ss_dssp             HHHHHTEEECTTEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE
T ss_pred             cceeeccccCcceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE
Confidence            455677766666677889999999999999 99999999999999999998765322111            13888999


Q ss_pred             EEEECC-CCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCC--eEEEEecCCCeEEEEeCCCCcee
Q 007283          105 DLQWSP-DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP--FRIATCGEDFLVNFYEGPPFKFK  181 (609)
Q Consensus       105 ~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~--~~i~t~~~d~~i~~~~~~~~~~~  181 (609)
                      +++|+| ++.+|++++.+.   .+++|+.+.+.....+. +...+.++.++|.+.  ..+++++.|+.+.+||....+..
T Consensus       104 ~~~~~~~~~~~l~s~~~d~---~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          104 TVQWYPHDTGMFTSSSFDK---TLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             EEEECTTCTTCEEEEETTS---EEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCC
T ss_pred             EEEEccCCCcEEEEEeCCC---eEEEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCccee
Confidence            999999 677888877443   57788887777666665 677899999998643  26999999999999999988888


Q ss_pred             eeccCcccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcc-cccc------------CcCCCCccceEEEEECCCCCe
Q 007283          182 LSHRGHSNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADK-IGEL------------SPEDGHKGSVYAVSWSPDGKQ  247 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~-~~~~------------~~~~~h~~~V~~l~~spd~~~  247 (609)
                      ..+.+|...|.+++|+|+++ +|++++.|+.+++||.+++.. +..+            ....+|.+.|.+++|+|++++
T Consensus       180 ~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  259 (408)
T 4a11_B          180 HILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLH  259 (408)
T ss_dssp             EEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSE
T ss_pred             eeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCE
Confidence            88999999999999999998 589999999999999876651 1111            111468899999999999999


Q ss_pred             EEEEeCCCcEEEeecccCCCCceEEEeccC-CCCCccceEEEE-EEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCC
Q 007283          248 VLTASADKSAKVWDISEDNHGKLKKTLTPS-GSGGVDDMLVGC-LWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMK  325 (609)
Q Consensus       248 l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~  325 (609)
                      |++++.|+.|++||+.....   ....... ............ ......+++++.++.+++|+.... .....+.+|..
T Consensus       260 l~~~~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-~~~~~~~~~~~  335 (408)
T 4a11_B          260 LLTVGTDNRMRLWNSSNGEN---TLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG-EQITMLKGHYK  335 (408)
T ss_dssp             EEEEETTSCEEEEETTTCCB---CCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC-CEEEEECCCSS
T ss_pred             EEEecCCCeEEEEECCCCcc---ceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC-cceeeeccCCC
Confidence            99999999999999874321   1111100 000001111111 112456777888999999998653 34456789999


Q ss_pred             CeEEEEEecCCCCEEEEEecCCcEEEEecCccc
Q 007283          326 NVTALTVLNIDPKVILSSSYDGLIVKWIQGIGY  358 (609)
Q Consensus       326 ~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~  358 (609)
                      .|.++++++ ++.++++++.||.|++|+.....
T Consensus       336 ~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          336 TVDCCVFQS-NFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             CEEEEEEET-TTTEEEEEETTSCEEEEEECC--
T ss_pred             eEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCC
Confidence            999999985 45799999999999999887653

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=2.7e-32  Score=270.93  Aligned_cols=288  Identities=11%  Similarity=0.142  Sum_probs=222.5

Q ss_pred             ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeec
Q 007283          184 HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDI  262 (609)
Q Consensus       184 ~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~  262 (609)
                      ..+|...|++++|+|++++|++++.|+.+++|+..+++.........+|...|.+++|+|+++ +|++++.|+.|++||+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~   86 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDL   86 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECS
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEe
Confidence            457999999999999999999999999999999887761111111236899999999999999 9999999999999998


Q ss_pred             -ccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeC--CCCCeEEEEEecCCCCE
Q 007283          263 -SEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSG--HMKNVTALTVLNIDPKV  339 (609)
Q Consensus       263 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~~~  339 (609)
                       ...   +.                                               ..+.+  |...|.++++++  +..
T Consensus        87 ~~~~---~~-----------------------------------------------~~~~~~~~~~~v~~l~~~~--~~~  114 (342)
T 1yfq_A           87 IGSP---SF-----------------------------------------------QALTNNEANLGICRICKYG--DDK  114 (342)
T ss_dssp             SSSS---SE-----------------------------------------------EECBSCCCCSCEEEEEEET--TTE
T ss_pred             ccCC---ce-----------------------------------------------EeccccCCCCceEEEEeCC--CCE
Confidence             521   11                                               12335  888999999987  679


Q ss_pred             EEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeecc
Q 007283          340 ILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALH  419 (609)
Q Consensus       340 ~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (609)
                      +++++.|+.|++|+..........           .       .             .                      
T Consensus       115 l~s~~~d~~i~iwd~~~~~~~~~~-----------~-------~-------------~----------------------  141 (342)
T 1yfq_A          115 LIAASWDGLIEVIDPRNYGDGVIA-----------V-------K-------------N----------------------  141 (342)
T ss_dssp             EEEEETTSEEEEECHHHHTTBCEE-----------E-------E-------------E----------------------
T ss_pred             EEEEcCCCeEEEEccccccccccc-----------c-------c-------------C----------------------
Confidence            999999999999976421000000           0       0             0                      


Q ss_pred             CCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC-CeeeeeEEEecCCCceEEEE
Q 007283          420 YPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG-DTLTEEAVLEKHRGAVSVIR  498 (609)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~-~~~~~~~~~~~h~~~i~~v~  498 (609)
                                         .....+.+...+.+++++|++  +++++.|+.|++|+++. ...........|...|.+++
T Consensus       142 -------------------~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~  200 (342)
T 1yfq_A          142 -------------------LNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVA  200 (342)
T ss_dssp             -------------------SCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEE
T ss_pred             -------------------CeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEE
Confidence                               000001122457888999887  99999999999999986 43322345567889999999


Q ss_pred             ECC-CCCEEEEEeCCCeEEEEEccCC-----ceEEeeecCCCC---------ceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          499 YSP-DVSMFASGDVNREAIVWDRVSR-----EVKLKNMLYHTA---------RINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       499 ~s~-~~~~l~s~s~d~~v~iwd~~~~-----~~~~~~~~~h~~---------~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      |+| ++.++++++.|+.+++|++...     ......+..|..         .|++++|+|++++|++++.||.|++||+
T Consensus       201 ~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~  280 (342)
T 1yfq_A          201 LLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL  280 (342)
T ss_dssp             ECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEET
T ss_pred             ECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcC
Confidence            999 9999999999999999998765     122334555654         9999999999999999999999999999


Q ss_pred             CCCCCcceeEeccc-cCCeEEEEEcCCCeEEEEeCCCc
Q 007283          564 DKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDAC  600 (609)
Q Consensus       564 ~~~~~~~~~~~~~h-~~~v~~~~~s~~~~l~s~s~D~~  600 (609)
                      ....  .+....+| ...|++++ .++++|+++|.|+.
T Consensus       281 ~~~~--~~~~~~~~h~~~v~~~~-~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          281 QTRK--KIKNFAKFNEDSVVKIA-CSDNILCLATSDDT  315 (342)
T ss_dssp             TTTE--EEEECCCCSSSEEEEEE-ECSSEEEEEEECTH
T ss_pred             ccHh--HhhhhhcccCCCceEec-CCCCeEEEEecCCc
Confidence            7643  34445667 99999999 88899999999999

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-31  Score=272.42  Aligned_cols=285  Identities=18%  Similarity=0.288  Sum_probs=222.3

Q ss_pred             cCcccc--eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          185 RGHSNF--VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       185 ~~h~~~--v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      .+|...  +.++.|++  ..+++++.|+.+++||..+++....+.  ..|.+.|.+++|+|++++|++++.||.|++||+
T Consensus        88 ~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~  163 (401)
T 4aez_A           88 PGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALAE--TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDV  163 (401)
T ss_dssp             TTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEEE--CCTTCCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             CCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEeee--cCCCCCEEEEEECCCCCEEEEECCCCeEEEEEC
Confidence            355543  55667765  458889999999999999988766553  248889999999999999999999999999998


Q ss_pred             ccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEE
Q 007283          263 SEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS  342 (609)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t  342 (609)
                      ..   ++..                                              ..+.+|...|.++.+.   +..+++
T Consensus       164 ~~---~~~~----------------------------------------------~~~~~~~~~v~~~~~~---~~~l~~  191 (401)
T 4aez_A          164 ES---QTKL----------------------------------------------RTMAGHQARVGCLSWN---RHVLSS  191 (401)
T ss_dssp             TT---CCEE----------------------------------------------EEECCCSSCEEEEEEE---TTEEEE
T ss_pred             cC---CeEE----------------------------------------------EEecCCCCceEEEEEC---CCEEEE
Confidence            62   1111                                              1234688888898883   379999


Q ss_pred             EecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCc
Q 007283          343 SSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE  422 (609)
Q Consensus       343 ~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  422 (609)
                      ++.||.|++|+......         .+                                                    
T Consensus       192 ~~~dg~i~i~d~~~~~~---------~~----------------------------------------------------  210 (401)
T 4aez_A          192 GSRSGAIHHHDVRIANH---------QI----------------------------------------------------  210 (401)
T ss_dssp             EETTSEEEEEETTSSSC---------EE----------------------------------------------------
T ss_pred             EcCCCCEEEEecccCcc---------ee----------------------------------------------------
Confidence            99999999997642100         00                                                    


Q ss_pred             EEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC
Q 007283          423 LVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD  502 (609)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~  502 (609)
                                        .....+...+.+++++|+++++++|+.|+.|++||+..+..  ...+..|...|.+++|+|+
T Consensus       211 ------------------~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~--~~~~~~~~~~v~~~~~~p~  270 (401)
T 4aez_A          211 ------------------GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIP--KFTKTNHNAAVKAVAWCPW  270 (401)
T ss_dssp             ------------------EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSE--EEEECCCSSCCCEEEECTT
T ss_pred             ------------------eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCc--cEEecCCcceEEEEEECCC
Confidence                              00011234688899999999999999999999999986544  3567789999999999997


Q ss_pred             C-CEEEEEe--CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEE--EeCCCeEEEEEcCCCCCcceeEeccc
Q 007283          503 V-SMFASGD--VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVAT--GSLDTCVIIYEIDKPASSRMTIKGAH  577 (609)
Q Consensus       503 ~-~~l~s~s--~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s--~s~D~~v~vw~~~~~~~~~~~~~~~h  577 (609)
                      + .++++++  .|+.+++||+.+.+... .+ .|...|++++|+|++++|++  |+.|+.|++|++............+|
T Consensus       271 ~~~ll~~~~gs~d~~i~i~d~~~~~~~~-~~-~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h  348 (401)
T 4aez_A          271 QSNLLATGGGTMDKQIHFWNAATGARVN-TV-DAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAH  348 (401)
T ss_dssp             STTEEEEECCTTTCEEEEEETTTCCEEE-EE-ECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECC
T ss_pred             CCCEEEEecCCCCCEEEEEECCCCCEEE-EE-eCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCC
Confidence            6 5666655  79999999988765432 23 47788999999999999999  44899999999976432233335689


Q ss_pred             cCCeEEEEEc-CCCeEEEEeCCCcEEEEEccC
Q 007283          578 LGGVYGLAFT-DEHSVVSSGEDACVRVWRLTP  608 (609)
Q Consensus       578 ~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~~  608 (609)
                      .+.|.+++|+ ++.+|++++.|+.|++|++..
T Consensus       349 ~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~  380 (401)
T 4aez_A          349 DTRVLYSALSPDGRILSTAASDENLKFWRVYD  380 (401)
T ss_dssp             SSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred             CCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence            9999999999 788999999999999999853

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=3.1e-31  Score=260.35  Aligned_cols=284  Identities=20%  Similarity=0.319  Sum_probs=219.7

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCc
Q 007283          190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK  269 (609)
Q Consensus       190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~  269 (609)
                      +.++|+||+++ .||+| .|++|+|||..+++.+..+. ..+|...|++++|+|++++|++|+.|++|++||+..   ++
T Consensus        27 y~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~-~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~---~~  100 (318)
T 4ggc_A           27 YLNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQ-MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ---QK  100 (318)
T ss_dssp             TCBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEE-CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT---TE
T ss_pred             cceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEE-ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC---ce
Confidence            46789999986 66655 59999999999998877664 247888999999999999999999999999999873   55


Q ss_pred             eEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcE
Q 007283          270 LKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLI  349 (609)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i  349 (609)
                      ....+...     ........+.+..+++++.++.+++|...........+.+|...+..+.+.. .+..+++++.|++|
T Consensus       101 ~~~~~~~h-----~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~s~~~d~~i  174 (318)
T 4ggc_A          101 RLRNMTSH-----SARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP-DGRHLASGGNDNLV  174 (318)
T ss_dssp             EEEEEECC-----SSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCE
T ss_pred             eEEEecCc-----cceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC-CCCEEEEEecCcce
Confidence            55555422     1233445567889999999999999987766656667889999999988864 45789999999999


Q ss_pred             EEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEec
Q 007283          350 VKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTD  429 (609)
Q Consensus       350 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (609)
                      ++|+...+.......                                                                 
T Consensus       175 ~iwd~~~~~~~~~~~-----------------------------------------------------------------  189 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPL-----------------------------------------------------------------  189 (318)
T ss_dssp             EEEESSCBTTBSCCS-----------------------------------------------------------------
T ss_pred             eEEECCCCcccccce-----------------------------------------------------------------
Confidence            999875432110000                                                                 


Q ss_pred             ccEEEeeCCeeeEEeccCCceeEEEEcCCCCE---EEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEE
Q 007283          430 SGVVLLRGAEVVSTINLRFPVTASAIAPDGSE---AIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF  506 (609)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~---l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l  506 (609)
                                 .........+.+++++|++..   +++|+.+++|++|+......   .....+...+..+.|+|++..+
T Consensus       190 -----------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~---~~~~~~~~~v~~~~~~~~~~~~  255 (318)
T 4ggc_A          190 -----------QTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC---LSAVDAHSQVCSILWSPHYKEL  255 (318)
T ss_dssp             -----------EEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE---EEEEECSSCEEEEEEETTTTEE
T ss_pred             -----------eeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc---cccccceeeeeeeeecccccce
Confidence                       000011134566677776553   35678899999999876654   2345677889999999999988


Q ss_pred             EEEe--CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          507 ASGD--VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       507 ~s~s--~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      ++++  .|++|++||+.+.+. +..+.+|...|++++|+||+++||||+.|++|+|||+..
T Consensus       256 ~~~sg~~d~~i~iwd~~~~~~-~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          256 ISGHGFAQNQLVIWKYPTMAK-VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             EEEECTTTCCEEEEETTTCCE-EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             EEEEEcCCCEEEEEECCCCcE-EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            7654  899999999887765 456789999999999999999999999999999999853

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.1e-32  Score=270.25  Aligned_cols=256  Identities=18%  Similarity=0.263  Sum_probs=197.9

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc-eeeEEEeecccceeEEEECC--CCCEEEEEECCCCcceE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH-VLKKEFRVLSGRIDDLQWSP--DGLRIVACGDGKGKSLV  127 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~-~~~~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~  127 (609)
                      ..+.+|++.|++++|+|+|++||+|+.|++|+|||+.+++ .+...+.+|.+.|.+++|+|  ++++|++++.+.   .+
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~---~v   83 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR---KV   83 (316)
T ss_dssp             -------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS---CE
T ss_pred             eecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC---EE
Confidence            3467899999999999999999999999999999998764 24467889999999999986  488999888654   36


Q ss_pred             EEEEcCCC--CeeEEEecCCccEEEEEEeeCC-CeEEEEecCCCeEEEEeCCCCc---eeeeccCcccceEEEEEcCC--
Q 007283          128 RAFMWDSG--TNVGEFDGHSRRVLSCAFKPSR-PFRIATCGEDFLVNFYEGPPFK---FKLSHRGHSNFVNCVRFSPD--  199 (609)
Q Consensus       128 ~~~~~~~~--~~~~~~~~h~~~v~~~~~~p~~-~~~i~t~~~d~~i~~~~~~~~~---~~~~~~~h~~~v~~l~~s~d--  199 (609)
                      ++|+...+  .....+.+|...|.+++|+|++ ...+++|+.|+.+++|+.....   ....+.+|...|.+++|+|+  
T Consensus        84 ~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  163 (316)
T 3bg1_A           84 IIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVV  163 (316)
T ss_dssp             EEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCC
T ss_pred             EEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccC
Confidence            67766655  3566788999999999999983 2359999999999999976542   24556789999999999998  


Q ss_pred             ---------------CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC----CeEEEEeCCCcEEEe
Q 007283          200 ---------------GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG----KQVLTASADKSAKVW  260 (609)
Q Consensus       200 ---------------g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~----~~l~s~s~d~~i~iw  260 (609)
                                     +++|++|+.|++|++||.+............+|.+.|.+++|+|++    .+|++++.|++|++|
T Consensus       164 ~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw  243 (316)
T 3bg1_A          164 PGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIW  243 (316)
T ss_dssp             C------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEE
T ss_pred             CccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEE
Confidence                           4689999999999999987543211122235899999999999987    789999999999999


Q ss_pred             ecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE
Q 007283          261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI  340 (609)
Q Consensus       261 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  340 (609)
                      ++......+                                             .....+.+|...|.+++|++ ++.++
T Consensus       244 ~~~~~~~~~---------------------------------------------~~~~~~~~~~~~v~~v~~sp-~g~~l  277 (316)
T 3bg1_A          244 TCDDASSNT---------------------------------------------WSPKLLHKFNDVVWHVSWSI-TANIL  277 (316)
T ss_dssp             ECSSTTCCC---------------------------------------------CBCCEEEECSSCEEEEEECT-TTCCE
T ss_pred             EccCccccc---------------------------------------------hhhhhhhcCCCcEEEEEEcC-CCCEE
Confidence            975311000                                             00112345778899999875 45789


Q ss_pred             EEEecCCcEEEEecC
Q 007283          341 LSSSYDGLIVKWIQG  355 (609)
Q Consensus       341 ~t~s~dg~i~~W~~~  355 (609)
                      ++++.|++|++|+..
T Consensus       278 as~~~D~~v~lw~~~  292 (316)
T 3bg1_A          278 AVSGGDNKVTLWKES  292 (316)
T ss_dssp             EEEESSSCEEEEEEC
T ss_pred             EEEcCCCeEEEEEEC
Confidence            999999999999754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.2e-31  Score=257.01  Aligned_cols=284  Identities=19%  Similarity=0.267  Sum_probs=216.1

Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283           60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG  139 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (609)
                      .++++|||++ +||+| .|++|+|||+.+++++. .+                                           
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~-~~-------------------------------------------   61 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQ-LL-------------------------------------------   61 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEE-EE-------------------------------------------
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEE-EE-------------------------------------------
Confidence            5789999987 77776 59999999998876432 11                                           


Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~  219 (609)
                      .+.+|...|.+++|+|++.+ +++|+.|+.+++|+.++++....+.+|...+.++.+  ++..+++++.++.+++|+...
T Consensus        62 ~~~~~~~~V~~v~~~~~~~~-l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~  138 (318)
T 4ggc_A           62 QMEQPGEYISSVAWIKEGNY-LAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRV  138 (318)
T ss_dssp             ECCSTTCCEEEEEECTTSSE-EEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTS
T ss_pred             EecCCCCeEEEEEECCCCCE-EEEEECCCcEEEeecCCceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCC
Confidence            13356777888888888874 889999999999999999999999999988876555  567899999999999999776


Q ss_pred             CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEE
Q 007283          220 ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV  299 (609)
Q Consensus       220 ~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (609)
                      .......  ..+|...+..+.|++++++|++++.|++|++||+.......                              
T Consensus       139 ~~~~~~~--~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~------------------------------  186 (318)
T 4ggc_A          139 AEHHVAT--LSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGW------------------------------  186 (318)
T ss_dssp             SSCEEEE--EECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBS------------------------------
T ss_pred             CceeEEE--EcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccc------------------------------
Confidence            5443221  24789999999999999999999999999999986321100                              


Q ss_pred             EcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEE--EEEecCCcEEEEecCccccceeccccccceeEeeeeC
Q 007283          300 SLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI--LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIE  377 (609)
Q Consensus       300 ~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~--~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~  377 (609)
                                     ........|...|..+.+.+.++.++  ++++.+++|++|+......                  
T Consensus       187 ---------------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~------------------  233 (318)
T 4ggc_A          187 ---------------VPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC------------------  233 (318)
T ss_dssp             ---------------CCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE------------------
T ss_pred             ---------------cceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc------------------
Confidence                           00122334666777777775555554  4677889999996532110                  


Q ss_pred             CcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcC
Q 007283          378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAP  457 (609)
Q Consensus       378 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp  457 (609)
                                                                                     .........+..+.++|
T Consensus       234 ---------------------------------------------------------------~~~~~~~~~v~~~~~~~  250 (318)
T 4ggc_A          234 ---------------------------------------------------------------LSAVDAHSQVCSILWSP  250 (318)
T ss_dssp             ---------------------------------------------------------------EEEEECSSCEEEEEEET
T ss_pred             ---------------------------------------------------------------cccccceeeeeeeeecc
Confidence                                                                           00001123466778899


Q ss_pred             CCCEEEEEe--CCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283          458 DGSEAIIGS--QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       458 ~g~~l~~gs--~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~  522 (609)
                      ++..+++++  .|+.|++||++++..  ...+.+|.+.|++++|+|||++|+||+.|++|++||+..
T Consensus       251 ~~~~~~~~sg~~d~~i~iwd~~~~~~--~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~  315 (318)
T 4ggc_A          251 HYKELISGHGFAQNQLVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE  315 (318)
T ss_dssp             TTTEEEEEECTTTCCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred             cccceEEEEEcCCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence            999887765  799999999987765  467889999999999999999999999999999999754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=5.1e-31  Score=261.73  Aligned_cols=289  Identities=12%  Similarity=0.117  Sum_probs=224.6

Q ss_pred             ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEE
Q 007283           52 IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM  131 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  131 (609)
                      ...+|.+.|++++|+|+|++||+++.|++|+||++.+++....                                     
T Consensus         6 ~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~-------------------------------------   48 (342)
T 1yfq_A            6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD-------------------------------------   48 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE-------------------------------------
T ss_pred             cccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc-------------------------------------
Confidence            3458999999999999999999999999999999876531100                                     


Q ss_pred             cCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC-CCCceeeeccC--cccceEEEEEcCCCCEEEEEeC
Q 007283          132 WDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG-PPFKFKLSHRG--HSNFVNCVRFSPDGSKFISVSS  208 (609)
Q Consensus       132 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~-~~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~  208 (609)
                            ...+.+|...|.+++|+|++...+++|+.|+.+++|+. ...+. ..+.+  |...|.+++|+| ++.|++++.
T Consensus        49 ------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~  120 (342)
T 1yfq_A           49 ------LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASW  120 (342)
T ss_dssp             ------EEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEET
T ss_pred             ------ceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcC
Confidence                  01123677788889999987624888999999999998 76654 56777  999999999999 999999999


Q ss_pred             CCcEEEEeCCC---------CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCC
Q 007283          209 DKKGIIYDGKT---------ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS  279 (609)
Q Consensus       209 d~~i~iwd~~~---------~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  279 (609)
                      |+.+++||.++         ++.+..+    .|.+.|.+++|+|++  +++++.|+.|++||+...  +...        
T Consensus       121 d~~i~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~--~~~~--------  184 (342)
T 1yfq_A          121 DGLIEVIDPRNYGDGVIAVKNLNSNNT----KVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLC--EDDN--------  184 (342)
T ss_dssp             TSEEEEECHHHHTTBCEEEEESCSSSS----SSCCCEEEEEECSSE--EEEEESTTEEEEEESSCC--TTCC--------
T ss_pred             CCeEEEEcccccccccccccCCeeeEE----eeCCceEEEEecCCc--EEEEeCCCeEEEEECCcc--cccc--------
Confidence            99999999877         6655544    378899999999988  999999999999997520  0000        


Q ss_pred             CCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccc
Q 007283          280 GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG  359 (609)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~  359 (609)
                                                          .......|.                                   
T Consensus       185 ------------------------------------~~~~~~~~~-----------------------------------  193 (342)
T 1yfq_A          185 ------------------------------------GTIEESGLK-----------------------------------  193 (342)
T ss_dssp             ------------------------------------CEEEECSCS-----------------------------------
T ss_pred             ------------------------------------ceeeecCCC-----------------------------------
Confidence                                                000000011                                   


Q ss_pred             ceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCe
Q 007283          360 GKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAE  439 (609)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (609)
                                                                                                      
T Consensus       194 --------------------------------------------------------------------------------  193 (342)
T 1yfq_A          194 --------------------------------------------------------------------------------  193 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEeccCCceeEEEEcC-CCCEEEEEeCCCcEEEEEecCC--e--eeeeEEEecCCC---------ceEEEEECCCCCE
Q 007283          440 VVSTINLRFPVTASAIAP-DGSEAIIGSQDGKLRVYSIRGD--T--LTEEAVLEKHRG---------AVSVIRYSPDVSM  505 (609)
Q Consensus       440 ~~~~~~~~~~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~--~--~~~~~~~~~h~~---------~i~~v~~s~~~~~  505 (609)
                              .++.+++++| +++++++|+.||.|++|+++..  .  ......+..|..         .|.+++|+|++.+
T Consensus       194 --------~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~  265 (342)
T 1yfq_A          194 --------YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF  265 (342)
T ss_dssp             --------SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCC
T ss_pred             --------CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCE
Confidence                    2356667788 8888888888888888888654  0  122345566654         9999999999999


Q ss_pred             EEEEeCCCeEEEEEccCCceEEeeecCC-CCceEEEEECCCCcEEEEEeCCCe-EEEEEc
Q 007283          506 FASGDVNREAIVWDRVSREVKLKNMLYH-TARINCLAWSPNNSMVATGSLDTC-VIIYEI  563 (609)
Q Consensus       506 l~s~s~d~~v~iwd~~~~~~~~~~~~~h-~~~i~~l~~s~d~~~l~s~s~D~~-v~vw~~  563 (609)
                      |++++.|+.|++||+.+.+. +..+..| ...|++++  |++++|++++.||+ .+.|..
T Consensus       266 l~~~~~dg~i~vwd~~~~~~-~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          266 LYTAGSDGIISCWNLQTRKK-IKNFAKFNEDSVVKIA--CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             EEEEETTSCEEEEETTTTEE-EEECCCCSSSEEEEEE--ECSSEEEEEEECTHHHHCSSS
T ss_pred             EEEecCCceEEEEcCccHhH-hhhhhcccCCCceEec--CCCCeEEEEecCCcccccccc
Confidence            99999999999999987665 4456677 99999999  99999999999998 666654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.5e-31  Score=263.59  Aligned_cols=293  Identities=19%  Similarity=0.207  Sum_probs=221.0

Q ss_pred             CeeEEEecCCccEEEEEEeeCC--CeEEEEecCCCeEEEEeCCC-Ccee-eeccCcccceEEEEEcCCCCEEEEEeCCCc
Q 007283          136 TNVGEFDGHSRRVLSCAFKPSR--PFRIATCGEDFLVNFYEGPP-FKFK-LSHRGHSNFVNCVRFSPDGSKFISVSSDKK  211 (609)
Q Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~--~~~i~t~~~d~~i~~~~~~~-~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~  211 (609)
                      ..+..+.+|...|.+++|+|++  ...+++|+.|+.+++|+... .... ..+.+|...|++++|+|++++|++++.|+.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            3455678999999999999995  44699999999999999876 4433 677889999999999999999999999999


Q ss_pred             EEEEeCCCCccccccCcCCCCccceEEEEE--CCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE
Q 007283          212 GIIYDGKTADKIGELSPEDGHKGSVYAVSW--SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC  289 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~--spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      +++||..+++.+...    +|...|.+++|  +|++.+|++++.|+.|++||+...   +....+               
T Consensus       110 v~iwd~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~---------------  167 (368)
T 3mmy_A          110 AKMWDLSSNQAIQIA----QHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSS---NPMMVL---------------  167 (368)
T ss_dssp             EEEEETTTTEEEEEE----ECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCS---SCSEEE---------------
T ss_pred             EEEEEcCCCCceeec----cccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCC---cEEEEE---------------
Confidence            999999988766533    68999999999  999999999999999999998632   222111               


Q ss_pred             EEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccc
Q 007283          290 LWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQ  369 (609)
Q Consensus       290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~  369 (609)
                                                     ..| ..+.++.+..   ..++.++.|+.+++|+..........      
T Consensus       168 -------------------------------~~~-~~~~~~~~~~---~~~~~~~~~~~i~~~~~~~~~~~~~~------  206 (368)
T 3mmy_A          168 -------------------------------QLP-ERCYCADVIY---PMAVVATAERGLIVYQLENQPSEFRR------  206 (368)
T ss_dssp             -------------------------------ECS-SCEEEEEEET---TEEEEEEGGGCEEEEECSSSCEEEEE------
T ss_pred             -------------------------------ecC-CCceEEEecC---CeeEEEeCCCcEEEEEeccccchhhh------
Confidence                                           111 1233444332   46778888889999976432100000      


Q ss_pred             eeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCc
Q 007283          370 IKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFP  449 (609)
Q Consensus       370 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (609)
                                              ...                                                .....
T Consensus       207 ------------------------~~~------------------------------------------------~~~~~  214 (368)
T 3mmy_A          207 ------------------------IES------------------------------------------------PLKHQ  214 (368)
T ss_dssp             ------------------------CCC------------------------------------------------SCSSC
T ss_pred             ------------------------ccc------------------------------------------------cccCC
Confidence                                    000                                                00011


Q ss_pred             eeEEEEcCCCCE----EEEEeCCCcEEEEEecCCee-eeeEEEecCCC------------ceEEEEECCCCCEEEEEeCC
Q 007283          450 VTASAIAPDGSE----AIIGSQDGKLRVYSIRGDTL-TEEAVLEKHRG------------AVSVIRYSPDVSMFASGDVN  512 (609)
Q Consensus       450 ~~~~~~sp~g~~----l~~gs~dg~i~iw~~~~~~~-~~~~~~~~h~~------------~i~~v~~s~~~~~l~s~s~d  512 (609)
                      ..++++.++...    +++|+.||.|++|++..... .....+.+|..            .|.+++|+|++.+|++++.|
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~d  294 (368)
T 3mmy_A          215 HRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSD  294 (368)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETT
T ss_pred             CceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccC
Confidence            233333333332    99999999999999976532 22345667765            79999999999999999999


Q ss_pred             CeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          513 REAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       513 ~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      +.|++||+.+.+. +..+..|...|++++|+||+++|++++.|+..+.|++-
T Consensus       295 g~i~iwd~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          295 GRFSFWDKDARTK-LKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             SCEEEEETTTTEE-EEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred             CeEEEEECCCCcE-EEEecCCCCCceEEEECCCCCeEEEEeccccccccccc
Confidence            9999999887654 45577899999999999999999999999876666553

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.2e-30  Score=266.15  Aligned_cols=278  Identities=23%  Similarity=0.408  Sum_probs=219.8

Q ss_pred             ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          184 HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       184 ~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ..+|...|.++.|  ++++|++|+.|+.|++||..+++.+..+   .+|.+.|.+++|  ++++|++++.||+|++||+.
T Consensus       129 ~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          129 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL---TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE---CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             ccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEE---cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            3457778988877  7889999999999999999998877666   379999999999  78899999999999999986


Q ss_pred             cCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEE
Q 007283          264 EDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSS  343 (609)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~  343 (609)
                      .   ++..                                              ..+.+|...|.++.+.   +..++++
T Consensus       202 ~---~~~~----------------------------------------------~~~~~h~~~v~~l~~~---~~~l~s~  229 (435)
T 1p22_A          202 T---GEML----------------------------------------------NTLIHHCEAVLHLRFN---NGMMVTC  229 (435)
T ss_dssp             S---CCEE----------------------------------------------EEECCCCSCEEEEECC---TTEEEEE
T ss_pred             C---CcEE----------------------------------------------EEEcCCCCcEEEEEEc---CCEEEEe
Confidence            3   2211                                              1234577888888874   3699999


Q ss_pred             ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcE
Q 007283          344 SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL  423 (609)
Q Consensus       344 s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (609)
                      +.||+|++|+..........                                                            
T Consensus       230 s~dg~i~vwd~~~~~~~~~~------------------------------------------------------------  249 (435)
T 1p22_A          230 SKDRSIAVWDMASPTDITLR------------------------------------------------------------  249 (435)
T ss_dssp             ETTSCEEEEECSSSSCCEEE------------------------------------------------------------
T ss_pred             eCCCcEEEEeCCCCCCceee------------------------------------------------------------
Confidence            99999999976532110000                                                            


Q ss_pred             EEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC
Q 007283          424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV  503 (609)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~  503 (609)
                                       .....+..++.++++  +++++++|+.||.|++||+.++..  ...+.+|...|.+++|  ++
T Consensus       250 -----------------~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~--~~~~~~~~~~v~~~~~--~~  306 (435)
T 1p22_A          250 -----------------RVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEF--VRTLNGHKRGIACLQY--RD  306 (435)
T ss_dssp             -----------------EEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEE--ET
T ss_pred             -----------------eEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcE--EEEEcCCCCcEEEEEe--CC
Confidence                             000011234666666  789999999999999999987754  4567899999999999  57


Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCC-------cceeEecc
Q 007283          504 SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPAS-------SRMTIKGA  576 (609)
Q Consensus       504 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~-------~~~~~~~~  576 (609)
                      .++++|+.|++|++||+.+++. +..+.+|...|++++|  ++++|++|+.||+|++||+.....       .......+
T Consensus       307 ~~l~~g~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  383 (435)
T 1p22_A          307 RLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVE  383 (435)
T ss_dssp             TEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECC
T ss_pred             CEEEEEeCCCeEEEEECCCCCE-EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccC
Confidence            8999999999999999987654 4457789999999999  789999999999999999853210       13455678


Q ss_pred             ccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          577 HLGGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       577 h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      |.+.|++++| ++..|+++|.||+|++|++.
T Consensus       384 h~~~v~~l~~-~~~~l~s~s~Dg~i~iwd~~  413 (435)
T 1p22_A          384 HSGRVFRLQF-DEFQIVSSSHDDTILIWDFL  413 (435)
T ss_dssp             CSSCCCCEEE-CSSCEEECCSSSEEEEEC--
T ss_pred             CCCCeEEEEe-CCCEEEEEeCCCEEEEEECC
Confidence            9999999999 77889999999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=9.4e-31  Score=270.08  Aligned_cols=199  Identities=17%  Similarity=0.303  Sum_probs=160.8

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce----------eeEEEeecc------------cceeEEEECCCC-
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV----------LKKEFRVLS------------GRIDDLQWSPDG-  112 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~----------~~~~~~~~~------------~~v~~~~~spdg-  112 (609)
                      |.+.|++++|+|+|++||+|+.||+|+||++.+++.          +...+..|.            +.|.+++|+|++ 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            578899999999999999999999999999986541          345677887            889999999998 


Q ss_pred             -CEEEEEECCCCcceEEEEEcCCCCee---------------------------------------EE-EecCCccEEEE
Q 007283          113 -LRIVACGDGKGKSLVRAFMWDSGTNV---------------------------------------GE-FDGHSRRVLSC  151 (609)
Q Consensus       113 -~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------~~-~~~h~~~v~~~  151 (609)
                       .+|++++.+.   .+++|+...+...                                       .. ..+|...|.++
T Consensus       107 ~~~l~s~s~d~---~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          107 AAQFLLSTNDK---TIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             SSEEEEEECSS---CEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             cceEEEeCCCC---eEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence             7888877544   4667766542211                                       12 36899999999


Q ss_pred             EEeeCCCeEEEEecCCCeEEEEeCCC-Cceee-------eccCcccceEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcc
Q 007283          152 AFKPSRPFRIATCGEDFLVNFYEGPP-FKFKL-------SHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       152 ~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~~-------~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                      +|+|++.. +++| .|+.+++||... .+...       .+.+|...|++++|+|++ ++|++|+.|+.|++||.++++.
T Consensus       184 ~~~~~~~~-l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          184 SINSDYET-YLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             EECTTSSE-EEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             EEcCCCCE-EEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            99999874 7787 799999999874 33332       366899999999999998 8999999999999999998875


Q ss_pred             ----ccccCcCCCCcc------------ceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          223 ----IGELSPEDGHKG------------SVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       223 ----~~~~~~~~~h~~------------~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                          +..+   .+|..            .|.+++|+|++++|++++. +.|++||+.
T Consensus       262 ~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~  314 (447)
T 3dw8_B          262 CDRHSKLF---EEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLN  314 (447)
T ss_dssp             SCTTCEEE---CCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETT
T ss_pred             ccceeeEe---ccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCC
Confidence                3333   34554            8999999999999999998 999999986

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.2e-31  Score=263.69  Aligned_cols=266  Identities=22%  Similarity=0.309  Sum_probs=210.7

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC--CCceeeeccCcccceEEEEEcCC--CCEEEEEeCCCcEE
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP--PFKFKLSHRGHSNFVNCVRFSPD--GSKFISVSSDKKGI  213 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~--~~~~~~~~~~h~~~v~~l~~s~d--g~~l~s~~~d~~i~  213 (609)
                      +..+.+|...|.+++|+|++.. +++|+.|+.+++|+..  ..+....+.+|...|++++|+|+  +++|++++.|+.|+
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~-l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSE-EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             cEEecCCcccEEEEEEcCCCCE-EEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            4567899999999999999985 9999999999999976  55667778899999999999987  89999999999999


Q ss_pred             EEeCCCCc--cccccCcCCCCccceEEEEECCC--CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE
Q 007283          214 IYDGKTAD--KIGELSPEDGHKGSVYAVSWSPD--GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC  289 (609)
Q Consensus       214 iwd~~~~~--~~~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      +||..+++  .+..+   .+|...|.+++|+|+  +.+|++++.|+.|++||+......                     
T Consensus        83 iwd~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~---------------------  138 (379)
T 3jrp_A           83 IWKEENGRWSQIAVH---AVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTT---------------------  138 (379)
T ss_dssp             EEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCC---------------------
T ss_pred             EEEcCCCceeEeeee---cCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCce---------------------
Confidence            99998876  33333   468899999999999  999999999999999998632100                     


Q ss_pred             EEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccc
Q 007283          290 LWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQ  369 (609)
Q Consensus       290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~  369 (609)
                                                ....+.+|...|.++++++.....                              
T Consensus       139 --------------------------~~~~~~~~~~~v~~~~~~~~~~~~------------------------------  162 (379)
T 3jrp_A          139 --------------------------SPIIIDAHAIGVNSASWAPATIEE------------------------------  162 (379)
T ss_dssp             --------------------------CEEEEECCTTCEEEEEECCCC---------------------------------
T ss_pred             --------------------------eeEEecCCCCceEEEEEcCccccc------------------------------
Confidence                                      011234566667666664320000                              


Q ss_pred             eeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCc
Q 007283          370 IKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFP  449 (609)
Q Consensus       370 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (609)
                                                                                                      
T Consensus       163 --------------------------------------------------------------------------------  162 (379)
T 3jrp_A          163 --------------------------------------------------------------------------------  162 (379)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCee--eeeEEEecCCCceEEEEECCC---CCEEEEEeCCCeEEEEEccCCc
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL--TEEAVLEKHRGAVSVIRYSPD---VSMFASGDVNREAIVWDRVSRE  524 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~--~~~~~~~~h~~~i~~v~~s~~---~~~l~s~s~d~~v~iwd~~~~~  524 (609)
                      .......|++.++++|+.||.|++||++.+..  .....+.+|.+.|.+++|+|+   +.++++++.|+.+++||+....
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence            00001257889999999999999999976542  234567889999999999999   8999999999999999987753


Q ss_pred             ----eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          525 ----VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       525 ----~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                          ........|...|++++|+|++++|++++.||.|++|++.
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence                2222233488899999999999999999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.6e-31  Score=271.00  Aligned_cols=322  Identities=12%  Similarity=0.078  Sum_probs=229.4

Q ss_pred             ccCcCceeEEeecC-CCCeEEEeC-CCEEEEEeCCC---Cccc--cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEc
Q 007283           13 STERGRGILISGHP-KSNSILYTN-GRSVIILDLSN---PLQV--SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWG   85 (609)
Q Consensus        13 ~~~~~~~~~~~~~~-~~~~l~~~~-~~~~~i~~~~~---~~~~--~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd   85 (609)
                      ..|.+....+.++| +++.|+++. ++.|.|||+.+   +...  ....+|.+.|++++|+|++++|++++.||+|+|||
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd  139 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLK  139 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEE
Confidence            34677888999999 999998874 58999999866   3211  11226999999999999999999999999999999


Q ss_pred             CC---CCceeeEEEee------------cccceeEEE--ECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec--CCc
Q 007283           86 AH---NDHVLKKEFRV------------LSGRIDDLQ--WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG--HSR  146 (609)
Q Consensus        86 ~~---~~~~~~~~~~~------------~~~~v~~~~--~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~  146 (609)
                      +.   +++... .+..            +...+.++.  ++||+.+|++++.+.   .+++|+...+..+..+.+  |..
T Consensus       140 ~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~h~~  215 (437)
T 3gre_A          140 VNHYQQESEVK-FLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLS---RVIIFDIRTLERLQIIENSPRHG  215 (437)
T ss_dssp             EEEEEETTEEE-EEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTS---EEEEEETTTCCEEEEEECCGGGC
T ss_pred             eccccCCceee-ccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCC---eEEEEeCCCCeeeEEEccCCCCC
Confidence            95   333221 1111            233455555  668898888887543   578888888888888988  899


Q ss_pred             cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc-CcccceEEEEEc----CCCCEEEEEeCCCcEEEEeCCCCc
Q 007283          147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR-GHSNFVNCVRFS----PDGSKFISVSSDKKGIIYDGKTAD  221 (609)
Q Consensus       147 ~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~l~~s----~dg~~l~s~~~d~~i~iwd~~~~~  221 (609)
                      .|.+++|+|++. .+++|+.|+.+++||....+....+. +|...|++++|+    |++.+|++++.|+.|++||..+++
T Consensus       216 ~v~~~~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~  294 (437)
T 3gre_A          216 AVSSICIDEECC-VLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGH  294 (437)
T ss_dssp             CEEEEEECTTSC-EEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTE
T ss_pred             ceEEEEECCCCC-EEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCc
Confidence            999999999987 49999999999999999888877765 788899999665    567799999999999999998877


Q ss_pred             cccccCc---------------------CCC--CccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCC
Q 007283          222 KIGELSP---------------------EDG--HKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG  278 (609)
Q Consensus       222 ~~~~~~~---------------------~~~--h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~  278 (609)
                      .+..+..                     ..+  |...|.+++|+ ++++|++++.|+.|++||+..   ++....+....
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~  370 (437)
T 3gre_A          295 CQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNE---LSSSKAVISPS  370 (437)
T ss_dssp             EEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTC---GGGCEEEECC-
T ss_pred             EEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCC---cccceEEeccc
Confidence            5543321                     112  78889999999 789999999999999999974   33333333211


Q ss_pred             CCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC-CCCEEEEEecCCcEEEE
Q 007283          279 SGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI-DPKVILSSSYDGLIVKW  352 (609)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~~~t~s~dg~i~~W  352 (609)
                      ..  ..............+....      ++.. ..........|...|.++++... +..++++|+.||.|++|
T Consensus       371 ~~--~~~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw  436 (437)
T 3gre_A          371 RF--SDVFIPTQVTANLTMLLRK------MKRT-STHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIF  436 (437)
T ss_dssp             -C--CCEEEEEEEETTEEEEEEE------CC--------------CCCEEEEEEEESSSSEEEEEEETTSCEEEE
T ss_pred             cc--CceEEEEEeecceEEEEEe------cccc-cccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEe
Confidence            11  1111111222222111111      1000 11112334569999999999865 35699999999999999

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=1.1e-30  Score=261.93  Aligned_cols=295  Identities=18%  Similarity=0.256  Sum_probs=220.8

Q ss_pred             eCCCCceeeeccCcccceEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-Cccc-cccCcCCCCccceEEEEECCCCCeE
Q 007283          174 EGPPFKFKLSHRGHSNFVNCVRFSPD---GSKFISVSSDKKGIIYDGKT-ADKI-GELSPEDGHKGSVYAVSWSPDGKQV  248 (609)
Q Consensus       174 ~~~~~~~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~d~~i~iwd~~~-~~~~-~~~~~~~~h~~~V~~l~~spd~~~l  248 (609)
                      +..+.+....+.+|...|++++|+|+   |++|++|+.|+.+++||..+ +..+ ..+   .+|.+.|++++|+|++++|
T Consensus        25 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l  101 (368)
T 3mmy_A           25 NHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQ---QMHTGPVLDVCWSDDGSKV  101 (368)
T ss_dssp             SSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEE---EECSSCEEEEEECTTSSEE
T ss_pred             CCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEe---ccccCCEEEEEECcCCCEE
Confidence            44566667778899999999999999   58999999999999999887 4443 233   4799999999999999999


Q ss_pred             EEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeE
Q 007283          249 LTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVT  328 (609)
Q Consensus       249 ~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~  328 (609)
                      ++++.|+.|++||+..   ++..                                               .+.+|...|.
T Consensus       102 ~s~~~dg~v~iwd~~~---~~~~-----------------------------------------------~~~~~~~~v~  131 (368)
T 3mmy_A          102 FTASCDKTAKMWDLSS---NQAI-----------------------------------------------QIAQHDAPVK  131 (368)
T ss_dssp             EEEETTSEEEEEETTT---TEEE-----------------------------------------------EEEECSSCEE
T ss_pred             EEEcCCCcEEEEEcCC---CCce-----------------------------------------------eeccccCceE
Confidence            9999999999999862   1111                                               1234778888


Q ss_pred             EEEEe-cCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCcccccccccc
Q 007283          329 ALTVL-NIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDI  407 (609)
Q Consensus       329 ~~~~~-~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~  407 (609)
                      +++++ ..++.++++++.||.|++|+...+.....                                             
T Consensus       132 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~---------------------------------------------  166 (368)
T 3mmy_A          132 TIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMV---------------------------------------------  166 (368)
T ss_dssp             EEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEE---------------------------------------------
T ss_pred             EEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEE---------------------------------------------
Confidence            99884 34557899999999999997643210000                                             


Q ss_pred             CCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEE
Q 007283          408 GSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL  487 (609)
Q Consensus       408 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~  487 (609)
                                                          +.....+.++.+.  +..+++++.|+.+++|++...........
T Consensus       167 ------------------------------------~~~~~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  208 (368)
T 3mmy_A          167 ------------------------------------LQLPERCYCADVI--YPMAVVATAERGLIVYQLENQPSEFRRIE  208 (368)
T ss_dssp             ------------------------------------EECSSCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEEEECC
T ss_pred             ------------------------------------EecCCCceEEEec--CCeeEEEeCCCcEEEEEeccccchhhhcc
Confidence                                                0000112222333  45788899999999999976654333333


Q ss_pred             ecCCCceEEEEECCCCCE----EEEEeCCCeEEEEEccCCce--EEeeecCCCC------------ceEEEEECCCCcEE
Q 007283          488 EKHRGAVSVIRYSPDVSM----FASGDVNREAIVWDRVSREV--KLKNMLYHTA------------RINCLAWSPNNSMV  549 (609)
Q Consensus       488 ~~h~~~i~~v~~s~~~~~----l~s~s~d~~v~iwd~~~~~~--~~~~~~~h~~------------~i~~l~~s~d~~~l  549 (609)
                      ..+...+.++.+.++...    +++++.|+.+++||+.....  ....+..|..            .|++++|+|++++|
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l  288 (368)
T 3mmy_A          209 SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTL  288 (368)
T ss_dssp             CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCE
T ss_pred             ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEE
Confidence            345566777777666655    99999999999999876521  1223445554            79999999999999


Q ss_pred             EEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          550 ATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       550 ~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      ++|+.||.|++||+...  ..+....+|...|++++|+ ++++|+++|.|+..+.|++
T Consensus       289 ~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          289 ATVGSDGRFSFWDKDAR--TKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             EEEETTSCEEEEETTTT--EEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             EEEccCCeEEEEECCCC--cEEEEecCCCCCceEEEECCCCCeEEEEecccccccccc
Confidence            99999999999999763  3445567899999999999 7889999999886655543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.2e-30  Score=269.25  Aligned_cols=309  Identities=16%  Similarity=0.197  Sum_probs=222.3

Q ss_pred             cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc-----------eeeeccCcc------------cceEEEEEcCC
Q 007283          143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK-----------FKLSHRGHS------------NFVNCVRFSPD  199 (609)
Q Consensus       143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~-----------~~~~~~~h~------------~~v~~l~~s~d  199 (609)
                      .|.+.|.+++|+|++.. ||+|+.|+.|++|+....+           ....+.+|.            ..|++++|+|+
T Consensus        26 ~~~~~V~~v~~s~~g~~-la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~  104 (447)
T 3dw8_B           26 AEADIISTVEFNHSGEL-LATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ  104 (447)
T ss_dssp             CGGGSEEEEEECSSSSE-EEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred             cccCcEEEEEECCCCCE-EEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence            45789999999999885 9999999999999977655           466788998            88999999999


Q ss_pred             C--CEEEEEeCCCcEEEEeCCCCccccc-------------------c------------------CcCCCCccceEEEE
Q 007283          200 G--SKFISVSSDKKGIIYDGKTADKIGE-------------------L------------------SPEDGHKGSVYAVS  240 (609)
Q Consensus       200 g--~~l~s~~~d~~i~iwd~~~~~~~~~-------------------~------------------~~~~~h~~~V~~l~  240 (609)
                      +  ..|++++.|+.|++||..+++....                   +                  ....+|...|.+++
T Consensus       105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  184 (447)
T 3dw8_B          105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS  184 (447)
T ss_dssp             CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred             CCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence            8  7999999999999999866432100                   0                  00247999999999


Q ss_pred             ECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceee
Q 007283          241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQL  320 (609)
Q Consensus       241 ~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~  320 (609)
                      |+|++++|+++ .|++|++||+...  .+...                                  ++...     +..+
T Consensus       185 ~~~~~~~l~s~-~d~~i~iwd~~~~--~~~~~----------------------------------~~~~~-----~~~~  222 (447)
T 3dw8_B          185 INSDYETYLSA-DDLRINLWHLEIT--DRSFN----------------------------------IVDIK-----PANM  222 (447)
T ss_dssp             ECTTSSEEEEE-CSSEEEEEETTEE--EEEEE----------------------------------EEECC-----CSSG
T ss_pred             EcCCCCEEEEe-CCCeEEEEECCCC--Cceee----------------------------------eeecc-----cccc
Confidence            99999999998 7999999998621  11111                                  11111     1235


Q ss_pred             eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccc
Q 007283          321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG  400 (609)
Q Consensus       321 ~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~  400 (609)
                      .+|...|.+++|++..+.++++++.||+|++|+...+.....      .+..+.....                      
T Consensus       223 ~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~~~~~~~~~----------------------  274 (447)
T 3dw8_B          223 EELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDR------HSKLFEEPED----------------------  274 (447)
T ss_dssp             GGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCT------TCEEECCC------------------------
T ss_pred             cccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccc------eeeEeccCCC----------------------
Confidence            679999999999865558999999999999998754321000      0000000000                      


Q ss_pred             cccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecC-C
Q 007283          401 YANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG-D  479 (609)
Q Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~-~  479 (609)
                                ..                          .......+..++.+++++|+|+++++++. +.|++||++. +
T Consensus       275 ----------~~--------------------------~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~  317 (447)
T 3dw8_B          275 ----------PS--------------------------NRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN  317 (447)
T ss_dssp             ---------------------------------------CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS
T ss_pred             ----------cc--------------------------ccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc
Confidence                      00                          00000012246899999999999999999 9999999975 4


Q ss_pred             eeeeeEEEecCCCc---------------eEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee---------------
Q 007283          480 TLTEEAVLEKHRGA---------------VSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN---------------  529 (609)
Q Consensus       480 ~~~~~~~~~~h~~~---------------i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~---------------  529 (609)
                      ..  ...+.+|...               +..++|+|++.+|++|+.|+.|++||+.+++.....               
T Consensus       318 ~~--~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  395 (447)
T 3dw8_B          318 RP--VETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPR  395 (447)
T ss_dssp             SC--SCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCC
T ss_pred             cc--cceeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCc
Confidence            33  3456667542               234899999999999999999999998876542210               


Q ss_pred             ----------------ecCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283          530 ----------------MLYHTARINCLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       530 ----------------~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                                      ...+...|++++|+|++.+||+++.++ +.+|.
T Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~  443 (447)
T 3dw8_B          396 KVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQ  443 (447)
T ss_dssp             CEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEE
T ss_pred             cccccCCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeec
Confidence                            012345799999999999999999887 66665

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-30  Score=261.54  Aligned_cols=255  Identities=22%  Similarity=0.400  Sum_probs=202.5

Q ss_pred             eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCccccccCcCCCCccceEEEEECCC--CCeEEEEeCCC
Q 007283          180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK--TADKIGELSPEDGHKGSVYAVSWSPD--GKQVLTASADK  255 (609)
Q Consensus       180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~d~  255 (609)
                      ....+.+|...|++++|+|++++|++|+.|+.|++||..  +++.+..+   .+|.+.|++++|+|+  +++|++++.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEe---cCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            345678899999999999999999999999999999987  44444444   479999999999987  99999999999


Q ss_pred             cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC
Q 007283          256 SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI  335 (609)
Q Consensus       256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  335 (609)
                      .|++||+..   ++...                                            ...+.+|.           
T Consensus        80 ~v~iwd~~~---~~~~~--------------------------------------------~~~~~~~~-----------  101 (379)
T 3jrp_A           80 KVLIWKEEN---GRWSQ--------------------------------------------IAVHAVHS-----------  101 (379)
T ss_dssp             CEEEEEEET---TEEEE--------------------------------------------EEEECCCS-----------
T ss_pred             EEEEEEcCC---CceeE--------------------------------------------eeeecCCC-----------
Confidence            999999752   10000                                            00001111           


Q ss_pred             CCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeE
Q 007283          336 DPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS  415 (609)
Q Consensus       336 ~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (609)
                                                                                                      
T Consensus       102 --------------------------------------------------------------------------------  101 (379)
T 3jrp_A          102 --------------------------------------------------------------------------------  101 (379)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC--CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCc
Q 007283          416 VALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD--GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGA  493 (609)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~  493 (609)
                                                      .++.+++++|+  +.++++|+.|+.|++|++..........+.+|...
T Consensus       102 --------------------------------~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~  149 (379)
T 3jrp_A          102 --------------------------------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG  149 (379)
T ss_dssp             --------------------------------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred             --------------------------------cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence                                            23566777888  88899999999999999877644444567889999


Q ss_pred             eEEEEECC-------------CCCEEEEEeCCCeEEEEEccCCce---EEeeecCCCCceEEEEECCC---CcEEEEEeC
Q 007283          494 VSVIRYSP-------------DVSMFASGDVNREAIVWDRVSREV---KLKNMLYHTARINCLAWSPN---NSMVATGSL  554 (609)
Q Consensus       494 i~~v~~s~-------------~~~~l~s~s~d~~v~iwd~~~~~~---~~~~~~~h~~~i~~l~~s~d---~~~l~s~s~  554 (609)
                      |.+++|+|             ++.++++++.|+.|++||+.....   ....+..|...|++++|+|+   +++|++++.
T Consensus       150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~  229 (379)
T 3jrp_A          150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ  229 (379)
T ss_dssp             EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred             eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence            99999999             799999999999999999876542   23346689999999999999   899999999


Q ss_pred             CCeEEEEEcCCCCCc-ceeE--eccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          555 DTCVIIYEIDKPASS-RMTI--KGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       555 D~~v~vw~~~~~~~~-~~~~--~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      |+.|++||+...... ....  ...|...|++++|+ ++++|++++.|+.|++|++.
T Consensus       230 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~  286 (379)
T 3jrp_A          230 DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  286 (379)
T ss_dssp             TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred             CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence            999999999764211 1122  23488999999999 78899999999999999986

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.98  E-value=8.7e-30  Score=261.73  Aligned_cols=278  Identities=23%  Similarity=0.350  Sum_probs=220.7

Q ss_pred             ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 007283          142 DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD  221 (609)
Q Consensus       142 ~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~  221 (609)
                      .+|...|.++++  ++. .+++|+.|+.|++||..+++....+.+|...|.+++|  +++.|++|+.|+.|++||..+++
T Consensus       130 ~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~  204 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGE  204 (435)
T ss_dssp             CSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCC
T ss_pred             cCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCc
Confidence            356677888876  555 5999999999999999999999999999999999999  78899999999999999999998


Q ss_pred             cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEc
Q 007283          222 KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL  301 (609)
Q Consensus       222 ~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (609)
                      .+..+.   +|.+.|.+++|++  .++++++.|+.|++||+.......                                
T Consensus       205 ~~~~~~---~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~--------------------------------  247 (435)
T 1p22_A          205 MLNTLI---HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDIT--------------------------------  247 (435)
T ss_dssp             EEEEEC---CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCE--------------------------------
T ss_pred             EEEEEc---CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCce--------------------------------
Confidence            877663   7999999999974  589999999999999986321100                                


Q ss_pred             CCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEE
Q 007283          302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIV  381 (609)
Q Consensus       302 ~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (609)
                                    ....+.+|...|.++.+   ++..+++++.||.|++|+...+..          +.          
T Consensus       248 --------------~~~~~~~~~~~v~~~~~---~~~~l~s~~~dg~i~vwd~~~~~~----------~~----------  290 (435)
T 1p22_A          248 --------------LRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVWNTSTCEF----------VR----------  290 (435)
T ss_dssp             --------------EEEEECCCSSCEEEEEE---ETTEEEEEETTSEEEEEETTTCCE----------EE----------
T ss_pred             --------------eeeEecCCCCcEEEEEe---CCCEEEEEeCCCeEEEEECCcCcE----------EE----------
Confidence                          00234568888888887   347999999999999998643210          00          


Q ss_pred             EEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCE
Q 007283          382 TSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSE  461 (609)
Q Consensus       382 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  461 (609)
                               .+                                                   ..+...+.++++  ++.+
T Consensus       291 ---------~~---------------------------------------------------~~~~~~v~~~~~--~~~~  308 (435)
T 1p22_A          291 ---------TL---------------------------------------------------NGHKRGIACLQY--RDRL  308 (435)
T ss_dssp             ---------EE---------------------------------------------------ECCSSCEEEEEE--ETTE
T ss_pred             ---------EE---------------------------------------------------cCCCCcEEEEEe--CCCE
Confidence                     00                                                   001123555555  5789


Q ss_pred             EEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCce--------EEeeecCC
Q 007283          462 AIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREV--------KLKNMLYH  533 (609)
Q Consensus       462 l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~--------~~~~~~~h  533 (609)
                      +++|+.||.|++||+.++..  ...+.+|...|.+++|  ++.++++|+.|++|++||+.+...        .+..+..|
T Consensus       309 l~~g~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h  384 (435)
T 1p22_A          309 VVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH  384 (435)
T ss_dssp             EEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC
T ss_pred             EEEEeCCCeEEEEECCCCCE--EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC
Confidence            99999999999999987654  4567899999999999  889999999999999999765431        34557789


Q ss_pred             CCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          534 TARINCLAWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       534 ~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      ...|++++|  ++++|++|+.||+|++||+...
T Consensus       385 ~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~  415 (435)
T 1p22_A          385 SGRVFRLQF--DEFQIVSSSHDDTILIWDFLND  415 (435)
T ss_dssp             SSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred             CCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence            999999999  7889999999999999999753

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=3.6e-30  Score=255.87  Aligned_cols=295  Identities=16%  Similarity=0.199  Sum_probs=210.1

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc---eeeEEEeecccceeEEEECC--CCCEEEEEECCCCc
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDH---VLKKEFRVLSGRIDDLQWSP--DGLRIVACGDGKGK  124 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~---~~~~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~  124 (609)
                      ...+.+|++.|++++|+|+|++||+++.||+|+|||+.++.   .+...+..|...|.+++|+|  |+++|++++.+.  
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg--   81 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDK--   81 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTS--
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCC--
Confidence            35678999999999999999999999999999999998653   24456778999999999999  699999888644  


Q ss_pred             ceEEEEEcCCC---------CeeEEEecCCccEEEEEEeeC--CCeEEEEecCCCeEEEEeCCCCceeeec---------
Q 007283          125 SLVRAFMWDSG---------TNVGEFDGHSRRVLSCAFKPS--RPFRIATCGEDFLVNFYEGPPFKFKLSH---------  184 (609)
Q Consensus       125 ~~~~~~~~~~~---------~~~~~~~~h~~~v~~~~~~p~--~~~~i~t~~~d~~i~~~~~~~~~~~~~~---------  184 (609)
                       .+++|+.+.+         ..+..+.+|...|.+++|+|+  +. .+++++.|+.+++||....+....+         
T Consensus        82 -~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~  159 (351)
T 3f3f_A           82 -TVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL  159 (351)
T ss_dssp             -CEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred             -eEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence             4778887765         446778899999999999998  76 5999999999999997765543222         


Q ss_pred             ----cCcccceEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC----CeEEEEeC
Q 007283          185 ----RGHSNFVNCVRFSPD---GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG----KQVLTASA  253 (609)
Q Consensus       185 ----~~h~~~v~~l~~s~d---g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~----~~l~s~s~  253 (609)
                          .+|...+.+++|+|+   +..|++++.|+.+.+|+...++... .....+|.+.|++++|+|++    ++|++++.
T Consensus       160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHV-AAKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEE-EEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceee-eeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence                268889999999997   8899999999999888877665421 12234799999999999998    89999999


Q ss_pred             CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEE----cCCcEEEEeCCCCCCCceeeeCCCCCeEE
Q 007283          254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS----LGGTISIFSANDLEKSPLQLSGHMKNVTA  329 (609)
Q Consensus       254 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~i~~~~~~~~~~~~~~~~~h~~~v~~  329 (609)
                      |+.|++||+............  ..  ..  ..............+.    ....+.+|.... ......+.+|...|.+
T Consensus       239 dg~i~iwd~~~~~~~~~~~~~--~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~  311 (351)
T 3f3f_A          239 DGRIRIFKITEKLSPLASEES--LT--NS--NMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ-VELLSEHDDHNGEVWS  311 (351)
T ss_dssp             TSCEEEEEEEECC---------------------------------------------CCSEE-EEEEEEECTTSSCEEE
T ss_pred             CCeEEEEeCCCCcCccccCCc--cc--ce--eccCCCcccccccccccccccceeeeeccccc-ccEEEEEecccccEEE
Confidence            999999998742111100000  00  00  0000000000111111    111122221110 1123456789999999


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283          330 LTVLNIDPKVILSSSYDGLIVKWIQGIG  357 (609)
Q Consensus       330 ~~~~~~~~~~~~t~s~dg~i~~W~~~~~  357 (609)
                      ++|++ ++.++++++.||.|++|+...+
T Consensus       312 ~~~s~-~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          312 VSWNL-TGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             EEECS-SSCCEEEEETTSCEEEEEECTT
T ss_pred             EEEcC-CCCEEEEecCCCcEEEEecCcC
Confidence            99975 4579999999999999987653

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.98  E-value=6.4e-28  Score=274.41  Aligned_cols=434  Identities=11%  Similarity=0.055  Sum_probs=290.1

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECC---CCcceEEEEEc
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDG---KGKSLVRAFMW  132 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~---~~~~~~~~~~~  132 (609)
                      +.+.+..++|||  +.||.++. ++|.+|++.+++.  ..+..|...+..++|||||++|+.++..   .+.  ..++.|
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~--~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~~~--~~i~~~   85 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGST--RKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNT--ADLYFY   85 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCE--EEEECSSSEEEEEEECTTSSEEEEEEEESTTCCE--EEEEEE
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcE--EEeeeCCCcccCeEECCCCCEEEEEEeeccCCCC--CeEEEE
Confidence            456789999996  58887765 6899999987653  4577888899999999999999987643   222  345555


Q ss_pred             CC-CCeeEEEecCCccE-------EEEEEeeCCCeEEEEecCC------CeEEEEeCCCCceeeeccCcccceEEEEEcC
Q 007283          133 DS-GTNVGEFDGHSRRV-------LSCAFKPSRPFRIATCGED------FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP  198 (609)
Q Consensus       133 ~~-~~~~~~~~~h~~~v-------~~~~~~p~~~~~i~t~~~d------~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~  198 (609)
                      +. +.....+..|...+       ..++|+|++. ++++++.+      ..+..|+...++......++   ...++|+|
T Consensus        86 d~~~g~~~~lt~~~~~~~~~~~~~~~~~~SpDg~-ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~---~~~~~~sp  161 (1045)
T 1k32_A           86 NGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN-LIISTDAMQPFSSMTCLYRVENDGINFVPLNLGP---ATHILFAD  161 (1045)
T ss_dssp             ETTTTEEEECCCCCEEEETTEECSEEEEECTTCC-EEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCS---CSEEEEET
T ss_pred             ECCCCCeEEcccCCCcccccccccccccCCCCCE-EEEEECCcCCCcccceEEEEECCCCCeEEecCCC---cceeeeCC
Confidence            43 23356778888888       8999999998 67777654      35666776555443333222   34577999


Q ss_pred             CCCEEEEEeC------------CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCC
Q 007283          199 DGSKFISVSS------------DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN  266 (609)
Q Consensus       199 dg~~l~s~~~------------d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~  266 (609)
                       | ++++++.            +....+|....+.....+   .+|.+.+.++.|+++ .++++++.|+++++|.+... 
T Consensus       162 -G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l---~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~-  234 (1045)
T 1k32_A          162 -G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKI---VDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLD-  234 (1045)
T ss_dssp             -T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEE---ECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETT-
T ss_pred             -C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEEC---cCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCC-
Confidence             8 8888753            234566643222333333   478999999999998 67778888899999987532 


Q ss_pred             CCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeC-----------CCCCeEEEEEe-c
Q 007283          267 HGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSG-----------HMKNVTALTVL-N  334 (609)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~-----------h~~~v~~~~~~-~  334 (609)
                       +.....+....  ..  ....+..++..++.+ .++.+++|+...  .....+.+           |...+..++++ +
T Consensus       235 -g~~~~~l~~~~--~~--~~~~~SpDG~~la~~-~~~~i~~~d~~~--~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~p  306 (1045)
T 1k32_A          235 -GKDLRKHTSFT--DY--YPRHLNTDGRRILFS-KGGSIYIFNPDT--EKIEKIEIGDLESPEDRIISIPSKFAEDFSPL  306 (1045)
T ss_dssp             -SCSCEECCCCC--SS--CEEEEEESSSCEEEE-ETTEEEEECTTT--CCEEECCCCCCCBCCSEEEECGGGGEEEEEEC
T ss_pred             -CCcceEecCCC--Cc--ceeeEcCCCCEEEEE-eCCEEEEecCCc--eEeeeeccCcccccccccccccccceeeecCC
Confidence             22222232211  11  122333445556655 588999998732  11223333           34468888887 5


Q ss_pred             CCCCEEEEEecCCcEEEEecCccccceecccccc-ceeEeeee-CCcEEEEeccceEE-EEeccCCccccccccccCCCC
Q 007283          335 IDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENS-QIKCFAAI-EEEIVTSGFDNKIW-RVSLQGDQCGYANSIDIGSQP  411 (609)
Q Consensus       335 ~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~d~~i~-~~~~~~~~~~~~~~~~~~~~~  411 (609)
                       +++.++.++ ++.+.+|+...+...... .+.. .+..+.+. +..++..+.+..+| .|+......            
T Consensus       307 -dG~~la~~~-~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~sdg~~l~~~s~~~~l~~~~d~~~~~~------------  371 (1045)
T 1k32_A          307 -DGDLIAFVS-RGQAFIQDVSGTYVLKVP-EPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA------------  371 (1045)
T ss_dssp             -GGGCEEEEE-TTEEEEECTTSSBEEECS-CCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE------------
T ss_pred             -CCCEEEEEE-cCEEEEEcCCCCceEEcc-CCCcceEEeeeEcCCCeEEEEECCCceEEEEECCCCCc------------
Confidence             445666666 889999987654322211 1111 22222222 22344444455565 555432210            


Q ss_pred             ceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCC
Q 007283          412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR  491 (609)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~  491 (609)
                                                   .....+...+..++++|||+++|+++.++.|++||+.++..  .....+|.
T Consensus       372 -----------------------------~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~--~~~~~~~~  420 (1045)
T 1k32_A          372 -----------------------------EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP--TVIERSRE  420 (1045)
T ss_dssp             -----------------------------EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCE--EEEEECSS
T ss_pred             -----------------------------eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCce--EEeccCCC
Confidence                                         00001224578899999999999999999999999987765  34456899


Q ss_pred             CceEEEEECCCCCEEEEEeCCC----------eEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEE
Q 007283          492 GAVSVIRYSPDVSMFASGDVNR----------EAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIY  561 (609)
Q Consensus       492 ~~i~~v~~s~~~~~l~s~s~d~----------~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw  561 (609)
                      +.+.+++|||||+++++++.++          ++++||+.+++  ...+..|...+.+++|+|||++|+.++.++...+|
T Consensus       421 ~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~--~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~  498 (1045)
T 1k32_A          421 AMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK--IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSP  498 (1045)
T ss_dssp             SCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE--EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEE
T ss_pred             CCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc--EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCc
Confidence            9999999999999999887654          89999988765  34566788889999999999999999988877777


Q ss_pred             Ec
Q 007283          562 EI  563 (609)
Q Consensus       562 ~~  563 (609)
                      +.
T Consensus       499 ~~  500 (1045)
T 1k32_A          499 DR  500 (1045)
T ss_dssp             CS
T ss_pred             ch
Confidence            53

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.9e-29  Score=251.42  Aligned_cols=285  Identities=14%  Similarity=0.121  Sum_probs=194.4

Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeE-EEEeCCCc
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV-LTASADKS  256 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~s~d~~  256 (609)
                      .+......+|...|++++|+|||++|++|+.++ +++|+..+++.....     +...+..+++.+++.++ ++++.|++
T Consensus         9 ~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~d~~   82 (355)
T 3vu4_A            9 RNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQ-----EMRHLSKVRMLHRTNYVAFVTGVKEV   82 (355)
T ss_dssp             ----------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEE-----ECSCCCEEEECTTSSEEEEECSSTTE
T ss_pred             cCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeee-----ecCCeEEEEEcCCCCEEEEEECCccE
Confidence            333445578999999999999999999888775 789998876655432     12247788899988877 56778899


Q ss_pred             EEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCC
Q 007283          257 AKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNID  336 (609)
Q Consensus       257 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  336 (609)
                      |++||+..   ++....+.                                               |...|.++.+..  
T Consensus        83 v~iWd~~~---~~~~~~~~-----------------------------------------------~~~~v~~v~~~~--  110 (355)
T 3vu4_A           83 VHIWDDVK---KQDVSRIK-----------------------------------------------VDAPVKDLFLSR--  110 (355)
T ss_dssp             EEEEETTT---TEEEEEEE-----------------------------------------------CSSCEEEEEECS--
T ss_pred             EEEEECCC---CcEEEEEE-----------------------------------------------CCCceEEEEEcC--
Confidence            99999863   22222211                                               334566666642  


Q ss_pred             CCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEe
Q 007283          337 PKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSV  416 (609)
Q Consensus       337 ~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  416 (609)
                       ..++.+ .|+.|++|+......         .+..+                                           
T Consensus       111 -~~~~~~-~~~~i~i~d~~~~~~---------~~~~~-------------------------------------------  136 (355)
T 3vu4_A          111 -EFIVVS-YGDVISVFKFGNPWK---------RITDD-------------------------------------------  136 (355)
T ss_dssp             -SEEEEE-ETTEEEEEESSTTCC---------BSSCC-------------------------------------------
T ss_pred             -CEEEEE-EcCEEEEEECCCCce---------eeEEe-------------------------------------------
Confidence             333333 478899997643200         00000                                           


Q ss_pred             eccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEE--EeCCCcEEEEEecCCee-------------
Q 007283          417 ALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII--GSQDGKLRVYSIRGDTL-------------  481 (609)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~--gs~dg~i~iw~~~~~~~-------------  481 (609)
                                            ..        +...++++|  .+++.  |+.||.|++||+..+..             
T Consensus       137 ----------------------~~--------~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~  184 (355)
T 3vu4_A          137 ----------------------IR--------FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAI  184 (355)
T ss_dssp             ----------------------EE--------EEEEEEEET--TEEEEEESSCTTCEEEEECCC----------------
T ss_pred             ----------------------cc--------CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCcccccccccccccc
Confidence                                  00        112234555  45555  68999999999976430             


Q ss_pred             ee-eEEEecCCCceEEEEECCCCCEEEEEeCCCe-EEEEEccCCceEEeeec-C-CCCceEEEEECCCCcEEEEEeCCCe
Q 007283          482 TE-EAVLEKHRGAVSVIRYSPDVSMFASGDVNRE-AIVWDRVSREVKLKNML-Y-HTARINCLAWSPNNSMVATGSLDTC  557 (609)
Q Consensus       482 ~~-~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~-~-h~~~i~~l~~s~d~~~l~s~s~D~~  557 (609)
                      .. ...+.+|.+.|.+++|+|+|.+|++|+.|++ +++||+.+++... .+. + |...|++++|+||+++|++++.|++
T Consensus       185 ~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~-~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~  263 (355)
T 3vu4_A          185 LGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVR-EFRRGLDRADVVDMKWSTDGSKLAVVSDKWT  263 (355)
T ss_dssp             --CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEE-EEECTTCCSCEEEEEECTTSCEEEEEETTCE
T ss_pred             CcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-EEEcCCCCCcEEEEEECCCCCEEEEEECCCE
Confidence            01 3567899999999999999999999999998 9999998776543 344 4 9999999999999999999999999


Q ss_pred             EEEEEcCCCCCcceeE---------------------eccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          558 VIIYEIDKPASSRMTI---------------------KGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       558 v~vw~~~~~~~~~~~~---------------------~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      |++||+..........                     ...+......++|+ +++.|++++.||.+++|++.
T Consensus       264 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~  335 (355)
T 3vu4_A          264 LHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVV  335 (355)
T ss_dssp             EEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEE
T ss_pred             EEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence            9999997532111111                     11112234678999 77899999999999999975

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=1.8e-29  Score=250.85  Aligned_cols=250  Identities=17%  Similarity=0.293  Sum_probs=203.4

Q ss_pred             ccCcCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCc----cccccccCCCCcEEEEECC--CCCEEEEEeCCCcEEEEc
Q 007283           13 STERGRGILISGHPKSNSILYTN-GRSVIILDLSNPL----QVSIYGEHAYPATVARFSP--NGEWIASADVSGTVRIWG   85 (609)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~----~~~~~~~h~~~v~~~~~sp--~g~~las~~~d~~i~vWd   85 (609)
                      ..|.+....+.++|+++.|++.. ++.+.+|++.++.    ....+.+|...|++++|+|  |+++|++++.||+|+|||
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            45677888999999999988875 5899999998763    4455679999999999999  699999999999999999


Q ss_pred             CCCCc--------eeeEEEeecccceeEEEECCC--CCEEEEEECCCCcceEEEEEcCCCCeeEEEe-------------
Q 007283           86 AHNDH--------VLKKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-------------  142 (609)
Q Consensus        86 ~~~~~--------~~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------  142 (609)
                      +.+++        .....+..|...|.+++|+|+  +.+|++++.+.   .+++|+...+..+..+.             
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDG---ILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTC---EEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCC---cEEEecCCChHHhccccccccccccccccC
Confidence            98753        234556788899999999999  99999887544   56777777655433222             


Q ss_pred             cCCccEEEEEEeeC--CCeEEEEecCCCeEEEEeCCCCce--eeeccCcccceEEEEEcCCC----CEEEEEeCCCcEEE
Q 007283          143 GHSRRVLSCAFKPS--RPFRIATCGEDFLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDG----SKFISVSSDKKGII  214 (609)
Q Consensus       143 ~h~~~v~~~~~~p~--~~~~i~t~~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg----~~l~s~~~d~~i~i  214 (609)
                      +|...+.+++|+|+  ....+++++.|+.+.+|+....+.  ...+.+|...|++++|+|++    ++|++++.|+.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence            67889999999997  234699999999998888766654  66788999999999999998    79999999999999


Q ss_pred             EeCCCCccc-------------------------------------------cccCcCCCCccceEEEEECCCCCeEEEE
Q 007283          215 YDGKTADKI-------------------------------------------GELSPEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       215 wd~~~~~~~-------------------------------------------~~~~~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                      ||...+...                                           ..+....+|.+.|++++|+|++++|+++
T Consensus       245 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          245 FKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EEEEECC---------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             EeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            998764210                                           1111124789999999999999999999


Q ss_pred             eCCCcEEEeecccC
Q 007283          252 SADKSAKVWDISED  265 (609)
Q Consensus       252 s~d~~i~iwd~~~~  265 (609)
                      +.|+.|++|++...
T Consensus       325 ~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          325 GDDGKVRLWKATYS  338 (351)
T ss_dssp             ETTSCEEEEEECTT
T ss_pred             cCCCcEEEEecCcC
Confidence            99999999999743

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.2e-29  Score=257.80  Aligned_cols=283  Identities=15%  Similarity=0.164  Sum_probs=215.5

Q ss_pred             EEEEeeCCCeEEEEecCCCeEEEEeCCCC----ceeeeccCcccceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCc---
Q 007283          150 SCAFKPSRPFRIATCGEDFLVNFYEGPPF----KFKLSHRGHSNFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTAD---  221 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~~~----~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~d~~i~iwd~~~~~---  221 (609)
                      .++++|+...++++++.|+.+.+|+....    +....+.+|...|++++|+| ++++|++|+.|+.|++||..++.   
T Consensus        39 ~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~  118 (402)
T 2aq5_A           39 FCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVL  118 (402)
T ss_dssp             SEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSS
T ss_pred             cEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcc
Confidence            47788877666677899999999997543    23345778999999999999 89999999999999999998874   


Q ss_pred             ----cccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283          222 ----KIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL  296 (609)
Q Consensus       222 ----~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (609)
                          .+..+   .+|.+.|.+++|+|++ .+|++++.|++|++||+..   ++...                        
T Consensus       119 ~~~~~~~~~---~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~---~~~~~------------------------  168 (402)
T 2aq5_A          119 PLREPVITL---EGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGT---GAAVL------------------------  168 (402)
T ss_dssp             CBCSCSEEE---ECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTT---TEEEE------------------------
T ss_pred             ccCCceEEe---cCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCC---CCccE------------------------
Confidence                23333   4799999999999998 6999999999999999863   22111                        


Q ss_pred             EEEEcCCcEEEEeCCCCCCCceee--eCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283          297 VIVSLGGTISIFSANDLEKSPLQL--SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA  374 (609)
Q Consensus       297 ~~~~~~g~i~~~~~~~~~~~~~~~--~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~  374 (609)
                                            .+  .+|...|.++++++ ++.++++++.|+.|++|+...+..          +    
T Consensus       169 ----------------------~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d~~i~iwd~~~~~~----------~----  211 (402)
T 2aq5_A          169 ----------------------TLGPDVHPDTIYSVDWSR-DGALICTSCRDKRVRVIEPRKGTV----------V----  211 (402)
T ss_dssp             ----------------------EECTTTCCSCEEEEEECT-TSSCEEEEETTSEEEEEETTTTEE----------E----
T ss_pred             ----------------------EEecCCCCCceEEEEECC-CCCEEEEEecCCcEEEEeCCCCce----------e----
Confidence                                  12  35788899999875 567899999999999998643210          0    


Q ss_pred             eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEecc-CCceeEE
Q 007283          375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINL-RFPVTAS  453 (609)
Q Consensus       375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  453 (609)
                                     ..+.                                                  ..+ ...+..+
T Consensus       212 ---------------~~~~--------------------------------------------------~~~~~~~~~~~  226 (402)
T 2aq5_A          212 ---------------AEKD--------------------------------------------------RPHEGTRPVHA  226 (402)
T ss_dssp             ---------------EEEE--------------------------------------------------CSSCSSSCCEE
T ss_pred             ---------------eeec--------------------------------------------------cCCCCCcceEE
Confidence                           0000                                                  000 1126778


Q ss_pred             EEcCCCCEEEEE---eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEE-EEeCCCeEEEEEccCCceEEee
Q 007283          454 AIAPDGSEAIIG---SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFA-SGDVNREAIVWDRVSREVKLKN  529 (609)
Q Consensus       454 ~~sp~g~~l~~g---s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~-s~s~d~~v~iwd~~~~~~~~~~  529 (609)
                      +++|+++++++|   +.|+.|++||+.............|...|.+++|+|++.+++ +|+.|+.|++||+.+.+..+..
T Consensus       227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHY  306 (402)
T ss_dssp             EECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEE
T ss_pred             EEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEe
Confidence            899999999999   799999999997654311222335778899999999999986 5567999999999877631222


Q ss_pred             ec--CCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          530 ML--YHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       530 ~~--~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      +.  .|...|++++|+|++.++++  .|+.+++|++...
T Consensus       307 l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~  343 (402)
T 2aq5_A          307 LSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYKLHER  343 (402)
T ss_dssp             EEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEEEETT
T ss_pred             ecccccCCcccceEEeccccccee--cceeEEEEEcCCC
Confidence            22  36689999999999998864  5779999998753

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=9.1e-29  Score=246.48  Aligned_cols=305  Identities=11%  Similarity=0.087  Sum_probs=199.5

Q ss_pred             EEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEEC
Q 007283           41 ILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD  120 (609)
Q Consensus        41 i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~  120 (609)
                      |+++.+...+..+.+|++.|++++|+|||++||+|+.|+ ++||+..+.+...   ..+...                  
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~~~~~~------------------   60 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---SQEMRH------------------   60 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---EEECSC------------------
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---eeecCC------------------
Confidence            455655555556788999999999999999999998765 8999987643211   110011                  


Q ss_pred             CCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCC
Q 007283          121 GKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG  200 (609)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg  200 (609)
                                                 +..+++.+++...+++++.|+.+++||..+++....+. |...|.++.|+++.
T Consensus        61 ---------------------------~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~v~~v~~~~~~  112 (355)
T 3vu4_A           61 ---------------------------LSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAPVKDLFLSREF  112 (355)
T ss_dssp             ---------------------------CCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSCEEEEEECSSE
T ss_pred             ---------------------------eEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCceEEEEEcCCE
Confidence                                       23344455555555677788899999988887777665 56689999999874


Q ss_pred             CEEEEEeCCCcEEEEeCCCC-ccccccCcCCCCccceEEEEECCCCCeEEE--EeCCCcEEEeecccCCCCceEEEeccC
Q 007283          201 SKFISVSSDKKGIIYDGKTA-DKIGELSPEDGHKGSVYAVSWSPDGKQVLT--ASADKSAKVWDISEDNHGKLKKTLTPS  277 (609)
Q Consensus       201 ~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~spd~~~l~s--~s~d~~i~iwd~~~~~~~~~~~~~~~~  277 (609)
                        ++++ .|+.+++||..++ +.+..+.   .   ....++++|  .+++.  ++.||.|++||+....   .....   
T Consensus       113 --~~~~-~~~~i~i~d~~~~~~~~~~~~---~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~---~~~~~---  175 (355)
T 3vu4_A          113 --IVVS-YGDVISVFKFGNPWKRITDDI---R---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSG---SATTQ---  175 (355)
T ss_dssp             --EEEE-ETTEEEEEESSTTCCBSSCCE---E---EEEEEEEET--TEEEEEESSCTTCEEEEECCC-------------
T ss_pred             --EEEE-EcCEEEEEECCCCceeeEEec---c---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCC---ccccc---
Confidence              4443 4789999999887 6655542   1   344566777  55665  5789999999986310   00000   


Q ss_pred             CCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcc
Q 007283          278 GSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIG  357 (609)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~  357 (609)
                                                          ..          .        .....+                 
T Consensus       176 ------------------------------------~~----------~--------~~~~~~-----------------  184 (355)
T 3vu4_A          176 ------------------------------------DQ----------G--------VQQKAI-----------------  184 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ------------------------------------cc----------c--------cccccc-----------------
Confidence                                                00          0        000000                 


Q ss_pred             ccceeccccccc-eeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEee
Q 007283          358 YGGKLQRKENSQ-IKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLR  436 (609)
Q Consensus       358 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (609)
                                .+ +                                                                  
T Consensus       185 ----------~p~~------------------------------------------------------------------  188 (355)
T 3vu4_A          185 ----------LGKG------------------------------------------------------------------  188 (355)
T ss_dssp             ------------CC------------------------------------------------------------------
T ss_pred             ----------Cccc------------------------------------------------------------------
Confidence                      00 0                                                                  


Q ss_pred             CCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCc-EEEEEecCCeeeeeEEEe-c-CCCceEEEEECCCCCEEEEEeCCC
Q 007283          437 GAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGK-LRVYSIRGDTLTEEAVLE-K-HRGAVSVIRYSPDVSMFASGDVNR  513 (609)
Q Consensus       437 ~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~-i~iw~~~~~~~~~~~~~~-~-h~~~i~~v~~s~~~~~l~s~s~d~  513 (609)
                          .....+..++.+++++|+|+++|+|+.|++ |++||++++...  ..+. + |.+.|.+++|+|++++|++++.|+
T Consensus       189 ----~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~--~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~  262 (355)
T 3vu4_A          189 ----VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV--REFRRGLDRADVVDMKWSTDGSKLAVVSDKW  262 (355)
T ss_dssp             ----EEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE--EEEECTTCCSCEEEEEECTTSCEEEEEETTC
T ss_pred             ----EEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE--EEEEcCCCCCcEEEEEECCCCCEEEEEECCC
Confidence                000012345888999999999999999998 999999877653  4555 5 999999999999999999999999


Q ss_pred             eEEEEEccCCceEEe-ee---------------------cCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          514 EAIVWDRVSREVKLK-NM---------------------LYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       514 ~v~iwd~~~~~~~~~-~~---------------------~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      ++++||+........ .+                     ..+......++|+||+++|++++.||.+++|++..
T Consensus       263 ~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          263 TLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             EEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             EEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence            999999865421100 00                     01122347799999999999999999999999853

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=8.9e-29  Score=251.48  Aligned_cols=282  Identities=17%  Similarity=0.229  Sum_probs=216.9

Q ss_pred             eEEeecCCCCeEEEe--CCCEEEEEeCCCC----ccccccccCCCCcEEEEECC-CCCEEEEEeCCCcEEEEcCCCCc--
Q 007283           20 ILISGHPKSNSILYT--NGRSVIILDLSNP----LQVSIYGEHAYPATVARFSP-NGEWIASADVSGTVRIWGAHNDH--   90 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~--~~~~~~i~~~~~~----~~~~~~~~h~~~v~~~~~sp-~g~~las~~~d~~i~vWd~~~~~--   90 (609)
                      ..++++|+...+++.  .++.+.||++.+.    .....+.+|.+.|++++|+| ++++||+|+.||+|+|||+.+++  
T Consensus        38 ~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~  117 (402)
T 2aq5_A           38 GFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLV  117 (402)
T ss_dssp             CSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCS
T ss_pred             CcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCc
Confidence            358888887655543  3579999999654    23445789999999999999 99999999999999999998763  


Q ss_pred             ----eeeEEEeecccceeEEEECCCC-CEEEEEECCCCcceEEEEEcCCCCeeEEE--ecCCccEEEEEEeeCCCeEEEE
Q 007283           91 ----VLKKEFRVLSGRIDDLQWSPDG-LRIVACGDGKGKSLVRAFMWDSGTNVGEF--DGHSRRVLSCAFKPSRPFRIAT  163 (609)
Q Consensus        91 ----~~~~~~~~~~~~v~~~~~spdg-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~i~t  163 (609)
                          .....+..|...|.+++|+|++ .+|++++.+.   .+++|+.+.+..+..+  .+|...|.+++|+|++.. +++
T Consensus       118 ~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~  193 (402)
T 2aq5_A          118 LPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN---VILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL-ICT  193 (402)
T ss_dssp             SCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTS---CEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC-EEE
T ss_pred             cccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCC---EEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE-EEE
Confidence                2235678899999999999998 5777776543   4788888888888888  889999999999999875 999


Q ss_pred             ecCCCeEEEEeCCCCceeeec-cCcccc-eEEEEEcCCCCEEEEE---eCCCcEEEEeCCCCccccccCcCCCCccceEE
Q 007283          164 CGEDFLVNFYEGPPFKFKLSH-RGHSNF-VNCVRFSPDGSKFISV---SSDKKGIIYDGKTADKIGELSPEDGHKGSVYA  238 (609)
Q Consensus       164 ~~~d~~i~~~~~~~~~~~~~~-~~h~~~-v~~l~~s~dg~~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~  238 (609)
                      ++.|+.+++||...++....+ .+|... +.++.|+|++.+|++|   +.|+.+++||..+++...... ...|...|.+
T Consensus       194 ~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~v~~  272 (402)
T 2aq5_A          194 SCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQ-ELDTSSGVLL  272 (402)
T ss_dssp             EETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEE-ECCCCSSCEE
T ss_pred             EecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEE-eccCCCceeE
Confidence            999999999999988888777 788776 8999999999999998   789999999998866422211 1246778999


Q ss_pred             EEECCCCCeEEE-EeCCCcEEEeecccCCC-CceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCC
Q 007283          239 VSWSPDGKQVLT-ASADKSAKVWDISEDNH-GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND  312 (609)
Q Consensus       239 l~~spd~~~l~s-~s~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~  312 (609)
                      ++|+|++++|++ ++.|+.|++||+..... ......+.  ..    ..+..+.|.++..+.++.++.+++|++..
T Consensus       273 ~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~--~~----~~v~~~~~sp~~~~~~s~~~~~~~~~l~~  342 (402)
T 2aq5_A          273 PFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS--SK----ESQRGMGYMPKRGLEVNKCEIARFYKLHE  342 (402)
T ss_dssp             EEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC--CS----SCCSEEEECCGGGSCGGGTEEEEEEEEET
T ss_pred             EEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc--cC----CcccceEEecccccceecceeEEEEEcCC
Confidence            999999999865 55799999999975321 11222222  11    12233445544333345677889998653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=4.9e-28  Score=229.76  Aligned_cols=285  Identities=13%  Similarity=0.091  Sum_probs=179.5

Q ss_pred             EEEEeCCCcEEEEcCCCCc--eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEE
Q 007283           72 IASADVSGTVRIWGAHNDH--VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVL  149 (609)
Q Consensus        72 las~~~d~~i~vWd~~~~~--~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  149 (609)
                      |++++ ..+|++|+..++.  .+.+.+.++..+|..++|.||-..|+++.-|+                    -+...|.
T Consensus        57 ~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--------------------~~~~~v~  115 (356)
T 2w18_A           57 IITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN--------------------LEIREIR  115 (356)
T ss_dssp             EEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS--------------------SSEEEEE
T ss_pred             EEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc--------------------ccccceE
Confidence            34554 5789999998863  35567888899999999999987777765332                    2456799


Q ss_pred             EEEEeeC----CCeEEEEecCCCeEEEEeCCCCceeee-ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283          150 SCAFKPS----RPFRIATCGEDFLVNFYEGPPFKFKLS-HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       150 ~~~~~p~----~~~~i~t~~~d~~i~~~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      +++|+|+    +.. +++++.+  +.+|....++.... ..+|.+.|..++|+|+|+.++                    
T Consensus       116 sla~spd~~~~~~~-l~s~g~~--~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~--------------------  172 (356)
T 2w18_A          116 ALFCSSDDESEKQV-LLKSGNI--KAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKE--------------------  172 (356)
T ss_dssp             EECC------CCEE-EEEEEEE--EEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEE--------------------
T ss_pred             EEEECCCccccccE-EEeCCCe--EEEEecCCCcEEEecccCCCCcEEEEEECCCCceee--------------------
Confidence            9999999    664 6666643  56665544443333 234444444444444444332                    


Q ss_pred             ccCcCCCCccceEEEEECC---CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEc
Q 007283          225 ELSPEDGHKGSVYAVSWSP---DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL  301 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~sp---d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (609)
                      .+   .+|+..+..++|+|   ++.+|++++.|++|++||+.   .++.++++...+                       
T Consensus       173 s~---~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~---TGk~l~tL~g~~-----------------------  223 (356)
T 2w18_A          173 NQ---FLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLK---TGQLLKKMHIDD-----------------------  223 (356)
T ss_dssp             EE---EECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETT---TCCEEEEEECCC-----------------------
T ss_pred             ee---ccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECC---CCcEEEEEcCCC-----------------------
Confidence            22   25788889999999   78999999999999999997   345554442110                       


Q ss_pred             CCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEE
Q 007283          302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIV  381 (609)
Q Consensus       302 ~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (609)
                                          .|...+.+++|++ ++.++++++.+..                                 
T Consensus       224 --------------------~~v~~v~~vafSp-dG~~lvs~s~~~~---------------------------------  249 (356)
T 2w18_A          224 --------------------SYQASVCHKAYSE-MGLLFIVLSHPCA---------------------------------  249 (356)
T ss_dssp             -----------------------CCCEEEEEEE-TTEEEEEEC-------------------------------------
T ss_pred             --------------------cceeeeEEEEECC-CCCEEEEeccCCC---------------------------------
Confidence                                0112333444443 2233333221110                                 


Q ss_pred             EEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCE
Q 007283          382 TSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSE  461 (609)
Q Consensus       382 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  461 (609)
                                                                                                   ...
T Consensus       250 -----------------------------------------------------------------------------~w~  252 (356)
T 2w18_A          250 -----------------------------------------------------------------------------KES  252 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             -----------------------------------------------------------------------------cce
Confidence                                                                                         012


Q ss_pred             EEEEeCCCcEEEEEecCCeeeeeEE---EecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceE
Q 007283          462 AIIGSQDGKLRVYSIRGDTLTEEAV---LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARIN  538 (609)
Q Consensus       462 l~~gs~dg~i~iw~~~~~~~~~~~~---~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~  538 (609)
                      +++|+.|++|++||..++.......   ..+|.+.+.+..+  ++.++|+++.|++|+|||+.+++. +..+.+|...+.
T Consensus       253 laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~-l~tL~gH~~~vv  329 (356)
T 2w18_A          253 ESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQC-TALLPPVSDQHW  329 (356)
T ss_dssp             -----CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSE-EEEECCC--CCC
T ss_pred             eeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcE-EEEecCCCCCeE
Confidence            5667777777777776665422111   1356555444444  488999999999999999988765 345677887655


Q ss_pred             -EEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          539 -CLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       539 -~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                       +++|||||++|++|+.|++|+|||+
T Consensus       330 s~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          330 SFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             CEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEEEECCCCCEEEEEECCCcEEEecC
Confidence             6899999999999999999999985

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-27  Score=245.82  Aligned_cols=312  Identities=13%  Similarity=0.063  Sum_probs=220.6

Q ss_pred             ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC---eeEEEec---------------------------------
Q 007283          100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT---NVGEFDG---------------------------------  143 (609)
Q Consensus       100 ~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------------------------  143 (609)
                      ..++.+++|+|||++|+++.++    .+++|+...+.   .+..+..                                 
T Consensus         4 ~~p~~~v~~s~dg~~l~~~~~~----~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (450)
T 2vdu_B            4 IHPLQNLLTSRDGSLVFAIIKN----CILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSN   79 (450)
T ss_dssp             ECCCCEEEECSSSSEEEEEETT----EEEEEEEETTTEEEEEEEEECCC-------------------------------
T ss_pred             cccEEEEEecCCCCEEEEEeCC----eEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccC
Confidence            3578999999999977776543    36777777777   5555543                                 


Q ss_pred             ---------------------CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC--CCceeeecc--CcccceEEEEEcC
Q 007283          144 ---------------------HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP--PFKFKLSHR--GHSNFVNCVRFSP  198 (609)
Q Consensus       144 ---------------------h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~--~~~~~~~~~--~h~~~v~~l~~s~  198 (609)
                                           |...|.+++|+|++..++++|+.|+.+++|+..  .++....+.  .|...|++++|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp  159 (450)
T 2vdu_B           80 KGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE  159 (450)
T ss_dssp             --------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT
T ss_pred             cCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC
Confidence                                 333799999999999767999999999999988  676666665  5678899999999


Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcccc-ccCcCCCCccceEEEEECCC---CCeEEEEeCCCcEEEeecccCCCCceEEEe
Q 007283          199 DGSKFISVSSDKKGIIYDGKTADKIG-ELSPEDGHKGSVYAVSWSPD---GKQVLTASADKSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       199 dg~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~h~~~V~~l~~spd---~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  274 (609)
                      +|++|++++.|+.+.+|+..+++... ......+|.+.|++++|+|+   +++|++++.|++|++||+..   ++.... 
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~---~~~~~~-  235 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQ---CFIVDK-  235 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESC---TTCEEE-
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCC---Cceeee-
Confidence            99999999999999999988776553 22223479999999999999   99999999999999999852   111110 


Q ss_pred             ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283          275 TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~  354 (609)
                                                                  .+.+|...|.+++|+  ++.++++++.|++|++|+.
T Consensus       236 --------------------------------------------~~~~h~~~v~~~~~s--d~~~l~s~~~d~~v~vwd~  269 (450)
T 2vdu_B          236 --------------------------------------------WLFGHKHFVSSICCG--KDYLLLSAGGDDKIFAWDW  269 (450)
T ss_dssp             --------------------------------------------ECCCCSSCEEEEEEC--STTEEEEEESSSEEEEEET
T ss_pred             --------------------------------------------eecCCCCceEEEEEC--CCCEEEEEeCCCeEEEEEC
Confidence                                                        134688899999987  6789999999999999987


Q ss_pred             CccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEE
Q 007283          355 GIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVL  434 (609)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (609)
                      ..+.......                             ....    ...+......        .+..+..        
T Consensus       270 ~~~~~~~~~~-----------------------------~~~~----~~~~~~~~~~--------~~~~~~~--------  300 (450)
T 2vdu_B          270 KTGKNLSTFD-----------------------------YNSL----IKPYLNDQHL--------APPRFQN--------  300 (450)
T ss_dssp             TTCCEEEEEE-----------------------------CHHH----HGGGCCTTSB--------C--------------
T ss_pred             CCCcEeeeec-----------------------------chhh----hhhhhhhccc--------ccccccc--------
Confidence            6542111000                             0000    0000000000        0000000        


Q ss_pred             eeCCeeeEEeccCCceeEEEEcCCCCEEEEEe-CCCcEEEEEe--cC-CeeeeeEEEecCCCceEEEEECCCCCEEEEEe
Q 007283          435 LRGAEVVSTINLRFPVTASAIAPDGSEAIIGS-QDGKLRVYSI--RG-DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD  510 (609)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs-~dg~i~iw~~--~~-~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s  510 (609)
                            .........+..++++|+++++++++ .|+.|++|++  .. +.+.....+..| +.|.+++|+|++.++++++
T Consensus       301 ------~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~~~v~~~~  373 (450)
T 2vdu_B          301 ------ENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDEFQVTLDN  373 (450)
T ss_dssp             ----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTEEEEEECC
T ss_pred             ------cccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCcEEEEEec
Confidence                  00001124578899999999999999 8999999999  43 233445567777 8899999999765555555


Q ss_pred             C------CCeEEEEEcc
Q 007283          511 V------NREAIVWDRV  521 (609)
Q Consensus       511 ~------d~~v~iwd~~  521 (609)
                      .      +..+.+|.+.
T Consensus       374 ~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          374 KESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             TTCCSSCCCSEEEEEEE
T ss_pred             ccCCCCCCcceEEEEEE
Confidence            3      4557888754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-27  Score=246.36  Aligned_cols=236  Identities=15%  Similarity=0.121  Sum_probs=192.3

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCc---cccccc-------------------------------------------
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPL---QVSIYG-------------------------------------------   54 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~---~~~~~~-------------------------------------------   54 (609)
                      .+.++|+|+.|+...++.|.+||+.+++   .+..+.                                           
T Consensus         9 ~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (450)
T 2vdu_B            9 NLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRTA   88 (450)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC----------------------------------------
T ss_pred             EEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccccccC
Confidence            6789999998888888999999998887   433333                                           


Q ss_pred             -----------cCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCC--CCceeeEEEe--ecccceeEEEECCCCCEEEEE
Q 007283           55 -----------EHAYPATVARFSPNGEWI-ASADVSGTVRIWGAH--NDHVLKKEFR--VLSGRIDDLQWSPDGLRIVAC  118 (609)
Q Consensus        55 -----------~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~--~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~  118 (609)
                                 +|.+.|++++|+|+|++| |+++.||+|+|||+.  +++.+ ..+.  .+...|.+++|+|||++|+++
T Consensus        89 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~v~~~~~sp~~~~l~~~  167 (450)
T 2vdu_B           89 AKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVL-KLRKRFCFSKRPNAISIAEDDTTVIIA  167 (450)
T ss_dssp             -----------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCE-EEEEEEECSSCEEEEEECTTSSEEEEE
T ss_pred             ccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCcee-eeeecccCCCCceEEEEcCCCCEEEEE
Confidence                       344579999999999996 899999999999998  65543 3343  566889999999999999988


Q ss_pred             ECCCCcceEEEEEcCCCCee----EEEecCCccEEEEEEeeC---CCeEEEEecCCCeEEEEeCCCCceeee-ccCcccc
Q 007283          119 GDGKGKSLVRAFMWDSGTNV----GEFDGHSRRVLSCAFKPS---RPFRIATCGEDFLVNFYEGPPFKFKLS-HRGHSNF  190 (609)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~p~---~~~~i~t~~~d~~i~~~~~~~~~~~~~-~~~h~~~  190 (609)
                      +.+.   .+++|+...+...    ..+.+|...|.+++|+|+   +. .+++|+.|+.|++||....+.... +.+|...
T Consensus       168 ~~~g---~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~-~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~  243 (450)
T 2vdu_B          168 DKFG---DVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQ-FIITSDRDEHIKISHYPQCFIVDKWLFGHKHF  243 (450)
T ss_dssp             ETTS---EEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCE-EEEEEETTSCEEEEEESCTTCEEEECCCCSSC
T ss_pred             eCCC---cEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCc-EEEEEcCCCcEEEEECCCCceeeeeecCCCCc
Confidence            6532   3445554444433    367889999999999999   65 599999999999999988877766 5689999


Q ss_pred             eEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC----------------------CCCccceEEEEECCCCCeE
Q 007283          191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE----------------------DGHKGSVYAVSWSPDGKQV  248 (609)
Q Consensus       191 v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----------------------~~h~~~V~~l~~spd~~~l  248 (609)
                      |.+++|+ ++++|++++.|+.|++||..+++.+..+...                      ..+...|.+++|+|++++|
T Consensus       244 v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l  322 (450)
T 2vdu_B          244 VSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFV  322 (450)
T ss_dssp             EEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEE
T ss_pred             eEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEE
Confidence            9999999 9999999999999999999998876554310                      0234579999999999999


Q ss_pred             EEEe-CCCcEEEeec
Q 007283          249 LTAS-ADKSAKVWDI  262 (609)
Q Consensus       249 ~s~s-~d~~i~iwd~  262 (609)
                      ++++ .|+.|++|++
T Consensus       323 ~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          323 AFFVEATKCIIILEM  337 (450)
T ss_dssp             EEEETTCSEEEEEEE
T ss_pred             EEEECCCCeEEEEEe
Confidence            9999 8999999999

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-28  Score=245.08  Aligned_cols=275  Identities=10%  Similarity=0.051  Sum_probs=191.7

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEec
Q 007283          196 FSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       196 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                      +.+++..|++|+.|+.|++||..+++.+..+.     ...|.++.|+|+   +++++.|++|++|+...           
T Consensus        44 ~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-----------  104 (343)
T 3lrv_A           44 MYYDKWVCMCRCEDGALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGN-----------  104 (343)
T ss_dssp             SSEEEEEEEEEEETTEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTT-----------
T ss_pred             hcCCCCEEEEECCCCcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccC-----------
Confidence            34577899999999999999999988776653     466888899998   99999999999999752           


Q ss_pred             cCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEec-CCCCEEEEEecCCcEEEEec
Q 007283          276 PSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLN-IDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~~~~t~s~dg~i~~W~~  354 (609)
                                                  .+.+|+............+|...|.++++++ .++.++++++.||+|++|+.
T Consensus       105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~  156 (343)
T 3lrv_A          105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY  156 (343)
T ss_dssp             ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred             ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence                                        1122222211100111235778899999875 14579999999999999986


Q ss_pred             CccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEE
Q 007283          355 GIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVL  434 (609)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (609)
                      ..+.....                             .                                          
T Consensus       157 ~~~~~~~~-----------------------------~------------------------------------------  165 (343)
T 3lrv_A          157 EDDSQYIV-----------------------------H------------------------------------------  165 (343)
T ss_dssp             SSSCEEEE-----------------------------E------------------------------------------
T ss_pred             CCCcEEEE-----------------------------E------------------------------------------
Confidence            53210000                             0                                          


Q ss_pred             eeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEec-CCCceEEEEECCCCCEEEEEeCCC
Q 007283          435 LRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEK-HRGAVSVIRYSPDVSMFASGDVNR  513 (609)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~-h~~~i~~v~~s~~~~~l~s~s~d~  513 (609)
                              ...+...+.+++++|+|.++|+|+.||.|++||++++... ...+.. |.+.|.+++|+|++.++++++ |+
T Consensus       166 --------~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~  235 (343)
T 3lrv_A          166 --------SAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQ  235 (343)
T ss_dssp             --------CCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEE-SS
T ss_pred             --------ecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEe-CC
Confidence                    0001234788999999999999999999999999876542 134666 999999999999999999999 55


Q ss_pred             eEEEEEccCCceEE--eeecCCCCceE--EEEECCCCcEEEEEeC-CCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-
Q 007283          514 EAIVWDRVSREVKL--KNMLYHTARIN--CLAWSPNNSMVATGSL-DTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-  587 (609)
Q Consensus       514 ~v~iwd~~~~~~~~--~~~~~h~~~i~--~l~~s~d~~~l~s~s~-D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-  587 (609)
                      +|++||+.+.+...  ..+..|...+.  +++|+|++++|++++. |+.|++|++.... .....     ..+..+.|. 
T Consensus       236 ~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~-~~~~~-----~~~~~~~~~~  309 (343)
T 3lrv_A          236 TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT-KNWTK-----DEESALCLQS  309 (343)
T ss_dssp             BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT-CSEEE-----EEEEECCC--
T ss_pred             eEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccc-cceEe-----cCceeEecCc
Confidence            99999987764321  11112334444  6999999999999998 9999999996533 21221     234445554 


Q ss_pred             ---CCCeEEEEeCCCcEEEE
Q 007283          588 ---DEHSVVSSGEDACVRVW  604 (609)
Q Consensus       588 ---~~~~l~s~s~D~~i~~W  604 (609)
                         +...+++++.|+.+.++
T Consensus       310 ~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          310 DTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             --CCCCEEEEEEETTEEEEE
T ss_pred             cccccceeEEEecCCceEEE
Confidence               33456666666666665

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.3e-28  Score=269.83  Aligned_cols=253  Identities=23%  Similarity=0.400  Sum_probs=199.6

Q ss_pred             eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCccccccCcCCCCccceEEEEECCC--CCeEEEEeCCCcE
Q 007283          182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK--TADKIGELSPEDGHKGSVYAVSWSPD--GKQVLTASADKSA  257 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~V~~l~~spd--~~~l~s~s~d~~i  257 (609)
                      ..+.+|...|++++|+|+|++|++|+.||.|++||..  +++.+..+   .+|.+.|++++|+|+  +++|++++.||+|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I   79 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEETTSCE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeCCCeE
Confidence            3467899999999999999999999999999999987  33444444   479999999999998  9999999999999


Q ss_pred             EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283          258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP  337 (609)
Q Consensus       258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  337 (609)
                      ++||+..   ++...                                            ...+.+|.             
T Consensus        80 ~vwd~~~---~~~~~--------------------------------------------~~~~~~h~-------------   99 (753)
T 3jro_A           80 LIWKEEN---GRWSQ--------------------------------------------IAVHAVHS-------------   99 (753)
T ss_dssp             EEEEEET---TEEEE--------------------------------------------EEEECCCS-------------
T ss_pred             EEEECCC---Ccccc--------------------------------------------cccccCCC-------------
Confidence            9999752   10000                                            00011111             


Q ss_pred             CEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEee
Q 007283          338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVA  417 (609)
Q Consensus       338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (609)
                                                                                                      
T Consensus       100 --------------------------------------------------------------------------------   99 (753)
T 3jro_A          100 --------------------------------------------------------------------------------   99 (753)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC--CCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceE
Q 007283          418 LHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD--GSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVS  495 (609)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~--g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~  495 (609)
                                                    .++.+++++|+  ++.+++|+.||.|++||+..+.......+.+|...|.
T Consensus       100 ------------------------------~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~  149 (753)
T 3jro_A          100 ------------------------------ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN  149 (753)
T ss_dssp             ------------------------------SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE
T ss_pred             ------------------------------CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE
Confidence                                          23566777887  8888999999999999987664444556788999999


Q ss_pred             EEEECC-------------CCCEEEEEeCCCeEEEEEccCCc---eEEeeecCCCCceEEEEECCC---CcEEEEEeCCC
Q 007283          496 VIRYSP-------------DVSMFASGDVNREAIVWDRVSRE---VKLKNMLYHTARINCLAWSPN---NSMVATGSLDT  556 (609)
Q Consensus       496 ~v~~s~-------------~~~~l~s~s~d~~v~iwd~~~~~---~~~~~~~~h~~~i~~l~~s~d---~~~l~s~s~D~  556 (609)
                      +++|+|             ++.++++|+.|++|++||+.+..   .....+..|...|++++|+|+   +++|++|+.||
T Consensus       150 ~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg  229 (753)
T 3jro_A          150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  229 (753)
T ss_dssp             EEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSS
T ss_pred             EEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCC
Confidence            999999             59999999999999999987653   233456789999999999999   99999999999


Q ss_pred             eEEEEEcCCCCCc---ceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          557 CVIIYEIDKPASS---RMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       557 ~v~vw~~~~~~~~---~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      +|++||+......   ......+|.+.|++++|+ ++++|++++.||.|++|++.
T Consensus       230 ~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~  284 (753)
T 3jro_A          230 TCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (753)
T ss_dssp             CEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred             EEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence            9999999764211   122234688999999999 77899999999999999986

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.5e-26  Score=235.91  Aligned_cols=354  Identities=12%  Similarity=0.027  Sum_probs=243.9

Q ss_pred             CCcEEEEECCCCCEEEEEeC-CCcEEEEcCCCCceeeEEEeecccceeEEE---ECCCCCEEEEEECCCCc-c-------
Q 007283           58 YPATVARFSPNGEWIASADV-SGTVRIWGAHNDHVLKKEFRVLSGRIDDLQ---WSPDGLRIVACGDGKGK-S-------  125 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~-d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~---~spdg~~l~~~~~~~~~-~-------  125 (609)
                      ..|..+.|+|....++.... ....+++..           .....+..++   |+|++..++........ .       
T Consensus        28 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (433)
T 3bws_A           28 TEIVKFSIHPYKGTVIRLGEEILPFKVLEM-----------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKP   96 (433)
T ss_dssp             EEEEEEEEECCTTCEEEETTEECCEEEEEE-----------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSG
T ss_pred             cEEEEEecccccCceEEcCceecceeeeec-----------ccCCccEEEEEeeccCCCcEEEEEEccccCcceeeeccc
Confidence            34677778886544443321 112222221           1233456677   88887776655422111 1       


Q ss_pred             ---eEEEEEcCC--C--CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee-----eccCcccceEE
Q 007283          126 ---LVRAFMWDS--G--TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL-----SHRGHSNFVNC  193 (609)
Q Consensus       126 ---~~~~~~~~~--~--~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~-----~~~~h~~~v~~  193 (609)
                         .+++|.++.  +  ..+..+..+. .+.+++|+| +..++++++.++.+.+||..+++...     .+.+|...|.+
T Consensus        97 ~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~-~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~  174 (433)
T 3bws_A           97 EELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID-NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVET  174 (433)
T ss_dssp             GGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS-SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEE
T ss_pred             CCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC-CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeE
Confidence               114666664  3  2344454443 456899999 55568888999999999998887765     45688999999


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEE-EEeCCCcEEEeecccCCCCceEE
Q 007283          194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL-TASADKSAKVWDISEDNHGKLKK  272 (609)
Q Consensus       194 l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~-s~s~d~~i~iwd~~~~~~~~~~~  272 (609)
                      ++|+|++.++++++.|+.+++||..+++.+..+.   .|...+.+++|+|++++++ +++.|+.|++||+..   ++...
T Consensus       175 ~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~---~~~~~  248 (433)
T 3bws_A          175 ISIPEHNELWVSQMQANAVHVFDLKTLAYKATVD---LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKT---KLEIR  248 (433)
T ss_dssp             EEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEE---CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTT---TEEEE
T ss_pred             EEEcCCCEEEEEECCCCEEEEEECCCceEEEEEc---CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCC---CcEEE
Confidence            9999999999999999999999999888776653   5788899999999999885 455799999999862   22222


Q ss_pred             EeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe--------
Q 007283          273 TLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS--------  344 (609)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s--------  344 (609)
                      .+.                                               +...+.++++++ +++.+++++        
T Consensus       249 ~~~-----------------------------------------------~~~~~~~~~~~~-~g~~l~~~~~~~~~~~~  280 (433)
T 3bws_A          249 KTD-----------------------------------------------KIGLPRGLLLSK-DGKELYIAQFSASNQES  280 (433)
T ss_dssp             ECC-----------------------------------------------CCSEEEEEEECT-TSSEEEEEEEESCTTCS
T ss_pred             Eec-----------------------------------------------CCCCceEEEEcC-CCCEEEEEECCCCcccc
Confidence            111                                               112245566654 345666665        


Q ss_pred             cCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEE
Q 007283          345 YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELV  424 (609)
Q Consensus       345 ~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  424 (609)
                      .|+.|++|+...+..          +                                                      
T Consensus       281 ~dg~i~~~d~~~~~~----------~------------------------------------------------------  296 (433)
T 3bws_A          281 GGGRLGIYSMDKEKL----------I------------------------------------------------------  296 (433)
T ss_dssp             CCEEEEEEETTTTEE----------E------------------------------------------------------
T ss_pred             CCCeEEEEECCCCcE----------E------------------------------------------------------
Confidence            477888886543200          0                                                      


Q ss_pred             EEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCE-EEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC
Q 007283          425 LVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSE-AIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV  503 (609)
Q Consensus       425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~-l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~  503 (609)
                                       ..+.+...+..++++|+++. +++++.|+.|++|++.++...  ..+ .+...+.+++|+|+|
T Consensus       297 -----------------~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~--~~~-~~~~~~~~~~~s~dg  356 (433)
T 3bws_A          297 -----------------DTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ--KSI-PVFDKPNTIALSPDG  356 (433)
T ss_dssp             -----------------EEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE--EEE-ECSSSEEEEEECTTS
T ss_pred             -----------------eeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE--EEe-cCCCCCCeEEEcCCC
Confidence                             00000113567889999975 466789999999999876653  233 367889999999999


Q ss_pred             CEEEEEeC---------------CCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEcC
Q 007283          504 SMFASGDV---------------NREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSL-DTCVIIYEID  564 (609)
Q Consensus       504 ~~l~s~s~---------------d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~-D~~v~vw~~~  564 (609)
                      +++++++.               |+.+++||..+.+... .+. +...+.+++|+||+++|++++. |++|++|+++
T Consensus       357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~-~~~-~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKE-FWE-AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEE-EEE-CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             CEEEEEecCCCccccccccccccceEEEEEECCCCcEEE-Eec-CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            99888876               5799999987765432 233 3567999999999999988875 9999999975

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.6e-28  Score=248.30  Aligned_cols=284  Identities=14%  Similarity=0.076  Sum_probs=175.4

Q ss_pred             CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce-----eeeccCcccceEEEEEcC--------CCCEEEEEeCCC
Q 007283          144 HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF-----KLSHRGHSNFVNCVRFSP--------DGSKFISVSSDK  210 (609)
Q Consensus       144 h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~-----~~~~~~h~~~v~~l~~s~--------dg~~l~s~~~d~  210 (609)
                      |...+....++|++ ..+++++.|+++++|+......     ...+.||.+.|++++|+|        ||++||+|+.|+
T Consensus        88 ~~~~~~~~~~~~~~-~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           88 HDGDGNVNSSPVYS-LFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ---------CCEEE-EEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             cCCCcceeecCCCC-CEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            33333334444554 4699999999999999776543     234789999999999998        889999999999


Q ss_pred             cEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEE
Q 007283          211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC  289 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      +++|||..++..+..+   .+|.+.|.+++|+|++. +|++++.|++|++||+...   +.......... ...      
T Consensus       167 tv~~Wd~~~~~~~~~~---~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~---~~~~~~~~~~~-~~~------  233 (393)
T 4gq1_A          167 TLIIWRLTDEGPILAG---YPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLN---LSAEENSQTEL-VKN------  233 (393)
T ss_dssp             EEEEEEEETTEEEEEE---EECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCC---C-----------CSC------
T ss_pred             eEEEEECCCCceeeee---cCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCC---cccccccccCC-ccc------
Confidence            9999998877665544   26888999999999875 8999999999999998742   22111110000 000      


Q ss_pred             EEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccc
Q 007283          290 LWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQ  369 (609)
Q Consensus       290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~  369 (609)
                          ...+......          ........+|...+.++.+...++..+++++.|+++++|++..+........+.. 
T Consensus       234 ----~~~~s~~~~~----------~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~-  298 (393)
T 4gq1_A          234 ----PWLLTLNTLP----------LVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTM-  298 (393)
T ss_dssp             ----CCSEEEESGG----------GC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------
T ss_pred             ----ceEEeccccc----------ceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecC-
Confidence                0000000000          0011234578899999999877888999999999999998754321111000000 


Q ss_pred             eeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEec-cCC
Q 007283          370 IKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTIN-LRF  448 (609)
Q Consensus       370 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  448 (609)
                                        .+.......                         +                  ..... ...
T Consensus       299 ------------------~~~~~~~~~-------------------------~------------------~~~~~~~~~  317 (393)
T 4gq1_A          299 ------------------KLGPKNLLP-------------------------N------------------VQGISLFPS  317 (393)
T ss_dssp             -----------------------CCSC-------------------------S------------------EEEECSSCC
T ss_pred             ------------------ccccEEEcc-------------------------c------------------cccccccCc
Confidence                              000000000                         0                  00000 011


Q ss_pred             ceeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283          449 PVTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDR  520 (609)
Q Consensus       449 ~~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~  520 (609)
                      .+.++...+ ++.++++|+.||+|++||+..+..  ...+.+|..+|.+|+|||||++||+++.|+ +.+|.+
T Consensus       318 ~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          318 LLGACPHPRYMDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             SSCCEECSSCTTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             ceeEEEccCCCCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            122222222 555678889999999999987654  345667889999999999999999998766 666654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=2.1e-26  Score=236.40  Aligned_cols=350  Identities=14%  Similarity=0.116  Sum_probs=240.6

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEE---ECCCCCEEEE--------------EeCCCcEEE
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVAR---FSPNGEWIAS--------------ADVSGTVRI   83 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~---~sp~g~~las--------------~~~d~~i~v   83 (609)
                      .+.++|..+.++...+..+...-+        ...+...+..++   |+|+++.++.              +..+++++|
T Consensus        32 ~~~~~p~~~~~~~~~~~~~~~~~~--------~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  103 (433)
T 3bws_A           32 KFSIHPYKGTVIRLGEEILPFKVL--------EMDKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKL  103 (433)
T ss_dssp             EEEEECCTTCEEEETTEECCEEEE--------EEETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCE
T ss_pred             EEecccccCceEEcCceecceeee--------ecccCCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEE
Confidence            677888766666554432111100        011233456666   7777766553              233444466


Q ss_pred             EcCCC--Cc-eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-----EEecCCccEEEEEEee
Q 007283           84 WGAHN--DH-VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-----EFDGHSRRVLSCAFKP  155 (609)
Q Consensus        84 Wd~~~--~~-~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~h~~~v~~~~~~p  155 (609)
                      |.++.  +. .....+.. ...+.+++|+|++ .+++++...  ..+++|+.+.++...     .+.+|...|.+++|+|
T Consensus       104 ~~~d~~~~~~~~~~~~~~-~~~~~~~~~s~~~-~~~~~~~~~--~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~  179 (433)
T 3bws_A          104 IALDKEGITHRFISRFKT-GFQPKSVRFIDNT-RLAIPLLED--EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPE  179 (433)
T ss_dssp             EECCBTTCSEEEEEEEEC-SSCBCCCEESSSS-EEEEEBTTS--SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGG
T ss_pred             EEECCCCCcceEEEEEcC-CCCceEEEEeCCC-eEEEEeCCC--CeEEEEECCCCeEeeecCcccccccCCceeEEEEcC
Confidence            65543  32 12223333 3456799999955 455444322  246778877777665     3458889999999998


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEE-EeCCCcEEEEeCCCCccccccCcCCCCcc
Q 007283          156 SRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFIS-VSSDKKGIIYDGKTADKIGELSPEDGHKG  234 (609)
Q Consensus       156 ~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s-~~~d~~i~iwd~~~~~~~~~~~~~~~h~~  234 (609)
                      ++. .+++++.|+.+++||..+.+....+..|...+.+++|+|+++.+++ ++.|+.+.+||..+++.+..+.    +..
T Consensus       180 ~~~-~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~----~~~  254 (433)
T 3bws_A          180 HNE-LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTD----KIG  254 (433)
T ss_dssp             GTE-EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECC----CCS
T ss_pred             CCE-EEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEec----CCC
Confidence            876 5899999999999999988888888889999999999999998754 4579999999999888766553    234


Q ss_pred             ceEEEEECCCCCeEEEEe--------CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEE
Q 007283          235 SVYAVSWSPDGKQVLTAS--------ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTIS  306 (609)
Q Consensus       235 ~V~~l~~spd~~~l~s~s--------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  306 (609)
                      .+.+++|+|+++++++++        .|+.|++||+..   ++.....                                
T Consensus       255 ~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~---~~~~~~~--------------------------------  299 (433)
T 3bws_A          255 LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK---EKLIDTI--------------------------------  299 (433)
T ss_dssp             EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT---TEEEEEE--------------------------------
T ss_pred             CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC---CcEEeec--------------------------------
Confidence            599999999999999988        488999999862   2221111                                


Q ss_pred             EEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEecc
Q 007283          307 IFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFD  386 (609)
Q Consensus       307 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  386 (609)
                                     .|...+..+++++..+.++++++.|+.|++|+...+..                           
T Consensus       300 ---------------~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~---------------------------  337 (433)
T 3bws_A          300 ---------------GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKV---------------------------  337 (433)
T ss_dssp             ---------------EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEE---------------------------
T ss_pred             ---------------cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcE---------------------------
Confidence                           12234456666654445778889999999997643210                           


Q ss_pred             ceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEe
Q 007283          387 NKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGS  466 (609)
Q Consensus       387 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs  466 (609)
                                                                            ...+.....+.+++++|+|+++++++
T Consensus       338 ------------------------------------------------------~~~~~~~~~~~~~~~s~dg~~l~~~~  363 (433)
T 3bws_A          338 ------------------------------------------------------QKSIPVFDKPNTIALSPDGKYLYVSC  363 (433)
T ss_dssp             ------------------------------------------------------EEEEECSSSEEEEEECTTSSEEEEEE
T ss_pred             ------------------------------------------------------EEEecCCCCCCeEEEcCCCCEEEEEe
Confidence                                                                  00001112366788899999888877


Q ss_pred             C---------------CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeC-CCeEEEEEcc
Q 007283          467 Q---------------DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV-NREAIVWDRV  521 (609)
Q Consensus       467 ~---------------dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~-d~~v~iwd~~  521 (609)
                      .               ||.|++||+.++...  ..+.. ...+.+++|+|+|+++++++. |+++++|++.
T Consensus       364 ~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~--~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          364 RGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK--EFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             CCCCCTTTCTTSCCSSCCEEEEEETTTTEEE--EEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             cCCCccccccccccccceEEEEEECCCCcEE--EEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            6               579999999877653  33343 457999999999999998875 9999999964

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=4.4e-26  Score=230.68  Aligned_cols=333  Identities=15%  Similarity=0.128  Sum_probs=234.0

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccE
Q 007283           69 GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRV  148 (609)
Q Consensus        69 g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  148 (609)
                      +.++++++.|++|++||+.+++.+ ..+..+ ..+.+++|+|||++|++++...  ..+++|+...++.+..+..+. .+
T Consensus         2 ~~l~vs~~~d~~v~v~d~~~~~~~-~~~~~~-~~~~~~~~s~dg~~l~~~~~~d--~~i~v~d~~~~~~~~~~~~~~-~v   76 (391)
T 1l0q_A            2 TFAYIANSESDNISVIDVTSNKVT-ATIPVG-SNPMGAVISPDGTKVYVANAHS--NDVSIIDTATNNVIATVPAGS-SP   76 (391)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEE-EEEECS-SSEEEEEECTTSSEEEEEEGGG--TEEEEEETTTTEEEEEEECSS-SE
T ss_pred             CEEEEEcCCCCEEEEEECCCCeEE-EEeecC-CCcceEEECCCCCEEEEECCCC--CeEEEEECCCCeEEEEEECCC-Cc
Confidence            356789999999999999887643 345544 4589999999999886665322  257777777777777777665 89


Q ss_pred             EEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccC
Q 007283          149 LSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGELS  227 (609)
Q Consensus       149 ~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~d~~i~iwd~~~~~~~~~~~  227 (609)
                      .+++|+|++..++++++.++.+.+||...++....+..|. .+.+++|+|+|+.| ++++.|+.+++||..+++.+..+.
T Consensus        77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  155 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS  155 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe
Confidence            9999999999767788888999999999888776666544 58999999999977 678889999999999888776653


Q ss_pred             cCCCCccceEEEEECCCCCeE-EEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEE
Q 007283          228 PEDGHKGSVYAVSWSPDGKQV-LTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTIS  306 (609)
Q Consensus       228 ~~~~h~~~V~~l~~spd~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  306 (609)
                          +...+.+++|+|++++| ++++.|+.|++||+..   ++....+                                
T Consensus       156 ----~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~---~~~~~~~--------------------------------  196 (391)
T 1l0q_A          156 ----VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVT---NSVIDTV--------------------------------  196 (391)
T ss_dssp             ----CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEE--------------------------------
T ss_pred             ----cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCC---CeEEEEE--------------------------------
Confidence                23457999999999887 6778899999999863   2222111                                


Q ss_pred             EEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe---cCCcEEEEecCccccceeccccccceeEeeeeCCcEEEE
Q 007283          307 IFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS---YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTS  383 (609)
Q Consensus       307 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s---~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (609)
                                     .+...+.++++++ +++.++.++   .|+.|++|+...+..                        
T Consensus       197 ---------------~~~~~~~~~~~~~-~g~~l~~~~~~~~~~~v~~~d~~~~~~------------------------  236 (391)
T 1l0q_A          197 ---------------KVEAAPSGIAVNP-EGTKAYVTNVDKYFNTVSMIDTGTNKI------------------------  236 (391)
T ss_dssp             ---------------ECSSEEEEEEECT-TSSEEEEEEECSSCCEEEEEETTTTEE------------------------
T ss_pred             ---------------ecCCCccceEECC-CCCEEEEEecCcCCCcEEEEECCCCeE------------------------
Confidence                           1223455666654 345566555   689999997643210                        


Q ss_pred             eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEE-
Q 007283          384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEA-  462 (609)
Q Consensus       384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l-  462 (609)
                                                                               ...+.....+.+++++|+|+++ 
T Consensus       237 ---------------------------------------------------------~~~~~~~~~~~~~~~s~dg~~l~  259 (391)
T 1l0q_A          237 ---------------------------------------------------------TARIPVGPDPAGIAVTPDGKKVY  259 (391)
T ss_dssp             ---------------------------------------------------------EEEEECCSSEEEEEECTTSSEEE
T ss_pred             ---------------------------------------------------------EEEEecCCCccEEEEccCCCEEE
Confidence                                                                     0000011235678899999977 


Q ss_pred             EEEeCCCcEEEEEecCCeeeeeEEEecCCCceE---EEE------------ECCCC----------CEEEEEeCCCeEEE
Q 007283          463 IIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVS---VIR------------YSPDV----------SMFASGDVNREAIV  517 (609)
Q Consensus       463 ~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~---~v~------------~s~~~----------~~l~s~s~d~~v~i  517 (609)
                      ++++.|+.|++||+.++.+.  ..+..|..+..   .+.            |+.+.          ..+.+.+.|.+.++
T Consensus       260 ~s~~~d~~v~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~  337 (391)
T 1l0q_A          260 VALSFXNTVSVIDTATNTIT--ATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATEWK  337 (391)
T ss_dssp             EEETTTTEEEEEETTTTEEE--EEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSEEE
T ss_pred             EEcCCCCEEEEEECCCCcEE--EEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceEEE
Confidence            67788999999999877653  33444433211   122            32222          34667778999999


Q ss_pred             EEccCCceEEeeecCCCCceEEEEECCCCcEEEEE
Q 007283          518 WDRVSREVKLKNMLYHTARINCLAWSPNNSMVATG  552 (609)
Q Consensus       518 wd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~  552 (609)
                      ||+..+...     .+..+  ...|+|+|.+.++.
T Consensus       338 W~~~~g~~~-----~~~~~--~~~~~~~g~y~~~~  365 (391)
T 1l0q_A          338 WDFGDGSSS-----KKQNP--THTYSETGIYTVRL  365 (391)
T ss_dssp             EECSSSCEE-----CSSSC--EECCSSCEEEEEEE
T ss_pred             EECCCCccc-----CcCCC--eEEeCCCceEEEEE
Confidence            998765431     12222  36899999987654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.2e-27  Score=245.09  Aligned_cols=248  Identities=18%  Similarity=0.255  Sum_probs=202.4

Q ss_pred             ccCcCceeEEeecCC-CCeEEEeC-CCEEEEEeCCC----------CccccccccCCCCcEEEEECCCCC-EEEEEeCCC
Q 007283           13 STERGRGILISGHPK-SNSILYTN-GRSVIILDLSN----------PLQVSIYGEHAYPATVARFSPNGE-WIASADVSG   79 (609)
Q Consensus        13 ~~~~~~~~~~~~~~~-~~~l~~~~-~~~~~i~~~~~----------~~~~~~~~~h~~~v~~~~~sp~g~-~las~~~d~   79 (609)
                      ..|.+.+..+.++|+ ++.|+... .+.|.+|++.+          ......+.+|...|.+++|+|+++ +|++|+.||
T Consensus       125 ~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg  204 (430)
T 2xyi_A          125 INHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDH  204 (430)
T ss_dssp             EEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTS
T ss_pred             EcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCC
Confidence            445777789999998 55666654 47899999976          455566789999999999999999 999999999


Q ss_pred             cEEEEcCCCCce------eeEEEeecccceeEEEECC-CCCEEEEEECCCCcceEEEEEcCCC---CeeEEEecCCccEE
Q 007283           80 TVRIWGAHNDHV------LKKEFRVLSGRIDDLQWSP-DGLRIVACGDGKGKSLVRAFMWDSG---TNVGEFDGHSRRVL  149 (609)
Q Consensus        80 ~i~vWd~~~~~~------~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h~~~v~  149 (609)
                      +|+||++.....      ....+..|...|.+++|+| ++..+++++++.   .+++|+....   ..+..+..|...|.
T Consensus       205 ~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          205 TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQ---KLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTS---EEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCC---eEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999987321      1245667888999999999 566776766433   4777777765   56777889999999


Q ss_pred             EEEEeeCCCeEEEEecCCCeEEEEeCCC-CceeeeccCcccceEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCccc----
Q 007283          150 SCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFKLSHRGHSNFVNCVRFSPDGS-KFISVSSDKKGIIYDGKTADKI----  223 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~----  223 (609)
                      +++|+|++...+++|+.|+.|++||... ......+.+|...|.+++|+|+++ +|++++.|+.|+|||.......    
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  361 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTE  361 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHH
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCcc
Confidence            9999999987899999999999999886 455667888999999999999985 7999999999999998762210    


Q ss_pred             -------cccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecc
Q 007283          224 -------GELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDIS  263 (609)
Q Consensus       224 -------~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~  263 (609)
                             ..+....+|...|.+++|+|++. +|++++.|+.|++|++.
T Consensus       362 ~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~  409 (430)
T 2xyi_A          362 DAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMA  409 (430)
T ss_dssp             HHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEEC
T ss_pred             ccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcc
Confidence                   11112347899999999999999 89999999999999986

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.5e-27  Score=244.53  Aligned_cols=264  Identities=20%  Similarity=0.313  Sum_probs=205.2

Q ss_pred             ccccCCCCcEEEEECCC-CCEEEEEeCCCcEEEEcCCCC---------ceeeEEEeecccceeEEEECCCCC-EEEEEEC
Q 007283           52 IYGEHAYPATVARFSPN-GEWIASADVSGTVRIWGAHND---------HVLKKEFRVLSGRIDDLQWSPDGL-RIVACGD  120 (609)
Q Consensus        52 ~~~~h~~~v~~~~~sp~-g~~las~~~d~~i~vWd~~~~---------~~~~~~~~~~~~~v~~~~~spdg~-~l~~~~~  120 (609)
                      ...+|.+.|++++|+|+ +++||+++.||+|+||++.+.         ......+..|...|.+++|+|++. +|++++.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            35689999999999997 789999999999999999761         123356778999999999999998 7777654


Q ss_pred             CCCcceEEEEEcCCCCe-------eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC---ceeeeccCcccc
Q 007283          121 GKGKSLVRAFMWDSGTN-------VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF---KFKLSHRGHSNF  190 (609)
Q Consensus       121 ~~~~~~~~~~~~~~~~~-------~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~---~~~~~~~~h~~~  190 (609)
                      +.   .+++|+...+..       ...+.+|...|.+++|+|++...|++++.|+.|++||....   +....+..|...
T Consensus       203 dg---~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~  279 (430)
T 2xyi_A          203 DH---TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE  279 (430)
T ss_dssp             TS---CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred             CC---eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence            33   467777765322       35677999999999999976668999999999999998765   455667789999


Q ss_pred             eEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-ccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCC
Q 007283          191 VNCVRFSPDGS-KFISVSSDKKGIIYDGKTA-DKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNH  267 (609)
Q Consensus       191 v~~l~~s~dg~-~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~  267 (609)
                      |++++|+|++. +|++|+.|+.|++||.+.. ..+..+   .+|.+.|.+++|+|+++ +|++++.|+.|++||+.....
T Consensus       280 v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~---~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~  356 (430)
T 2xyi_A          280 VNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF---ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGE  356 (430)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEE---ECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTC
T ss_pred             eEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEe---ecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCcc
Confidence            99999999987 6899999999999999874 334444   36899999999999995 699999999999999864211


Q ss_pred             CceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCC
Q 007283          268 GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDG  347 (609)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg  347 (609)
                      ..   .....     .                  ++         .......+.+|...|.++++++..+.++++++.||
T Consensus       357 ~~---~~~~~-----~------------------~~---------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg  401 (430)
T 2xyi_A          357 EQ---STEDA-----E------------------DG---------PPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDN  401 (430)
T ss_dssp             CC---CHHHH-----H------------------HC---------CTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTS
T ss_pred             cc---Ccccc-----c------------------cC---------CcceEEEcCCCCCCceEEEECCCCCCEEEEEECCC
Confidence            00   00000     0                  00         00111234678889999999876555999999999


Q ss_pred             cEEEEecCc
Q 007283          348 LIVKWIQGI  356 (609)
Q Consensus       348 ~i~~W~~~~  356 (609)
                      .|++|+...
T Consensus       402 ~i~iw~~~~  410 (430)
T 2xyi_A          402 IMQVWQMAE  410 (430)
T ss_dssp             EEEEEEECH
T ss_pred             CEEEeEccc
Confidence            999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=9.3e-26  Score=228.30  Aligned_cols=267  Identities=18%  Similarity=0.171  Sum_probs=200.5

Q ss_pred             eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccCcCCCCccceE
Q 007283          159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY  237 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~  237 (609)
                      .++++++.|+.+++||..+++....+.+|.. +.+++|+|+|+.| ++++.|+.+++||..+++.+..+.    +...+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v~   77 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP----AGSSPQ   77 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE----CSSSEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEE----CCCCcc
Confidence            4688999999999999999888887777754 8999999999976 677789999999999988776663    233899


Q ss_pred             EEEECCCCCeEEE-EeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCC
Q 007283          238 AVSWSPDGKQVLT-ASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKS  316 (609)
Q Consensus       238 ~l~~spd~~~l~s-~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  316 (609)
                      +++|+|++++|+. ++.++.|++||+..   ++....+                                          
T Consensus        78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~---~~~~~~~------------------------------------------  112 (391)
T 1l0q_A           78 GVAVSPDGKQVYVTNMASSTLSVIDTTS---NTVAGTV------------------------------------------  112 (391)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEE------------------------------------------
T ss_pred             ceEECCCCCEEEEEECCCCEEEEEECCC---CeEEEEE------------------------------------------
Confidence            9999999998754 45679999999863   2222111                                          


Q ss_pred             ceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccC
Q 007283          317 PLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQG  396 (609)
Q Consensus       317 ~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  396 (609)
                          . +...+.++++++....++++++.|+.|++|+...+..                                     
T Consensus       113 ----~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~-------------------------------------  150 (391)
T 1l0q_A          113 ----K-TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-------------------------------------  150 (391)
T ss_dssp             ----E-CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-------------------------------------
T ss_pred             ----e-CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcE-------------------------------------
Confidence                1 1234567777654434558899999999997643210                                     


Q ss_pred             CccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEE-EEEeCCCcEEEEE
Q 007283          397 DQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEA-IIGSQDGKLRVYS  475 (609)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l-~~gs~dg~i~iw~  475 (609)
                                                                  ...+.....+..++++|+|+++ ++++.|+.|++||
T Consensus       151 --------------------------------------------~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d  186 (391)
T 1l0q_A          151 --------------------------------------------INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID  186 (391)
T ss_dssp             --------------------------------------------EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             --------------------------------------------EEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEE
Confidence                                                        0000011235678899999987 6778899999999


Q ss_pred             ecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEe---CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEE-EE
Q 007283          476 IRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGD---VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV-AT  551 (609)
Q Consensus       476 ~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s---~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l-~s  551 (609)
                      +.++...  ..+ .+...+.+++|+|+++++++++   .++.+++||+.+.+.. ..+..| ..+.+++|+||+++| ++
T Consensus       187 ~~~~~~~--~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~s~dg~~l~~s  261 (391)
T 1l0q_A          187 TVTNSVI--DTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-ARIPVG-PDPAGIAVTPDGKKVYVA  261 (391)
T ss_dssp             TTTTEEE--EEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-EEEECC-SSEEEEEECTTSSEEEEE
T ss_pred             CCCCeEE--EEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-EEEecC-CCccEEEEccCCCEEEEE
Confidence            9877543  222 3567899999999999999888   6999999998776543 334444 458999999999877 67


Q ss_pred             EeCCCeEEEEEcCCC
Q 007283          552 GSLDTCVIIYEIDKP  566 (609)
Q Consensus       552 ~s~D~~v~vw~~~~~  566 (609)
                      ++.|+.|++||+...
T Consensus       262 ~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          262 LSFXNTVSVIDTATN  276 (391)
T ss_dssp             ETTTTEEEEEETTTT
T ss_pred             cCCCCEEEEEECCCC
Confidence            789999999998753

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.6e-27  Score=240.89  Aligned_cols=270  Identities=10%  Similarity=0.084  Sum_probs=167.8

Q ss_pred             CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc--ccCcCCCCccceEEEEECC--------CCCeEEEEeCCC
Q 007283          186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG--ELSPEDGHKGSVYAVSWSP--------DGKQVLTASADK  255 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~V~~l~~sp--------d~~~l~s~s~d~  255 (609)
                      .|........+.+++.+|++++.|++++|||.++++...  .+....+|.+.|++++|+|        |+++|+++|.|+
T Consensus        87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~  166 (393)
T 4gq1_A           87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDC  166 (393)
T ss_dssp             ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTS
T ss_pred             ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCC
Confidence            344555566677788899999999999999988776432  2233468999999999998        889999999999


Q ss_pred             cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecC
Q 007283          256 SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI  335 (609)
Q Consensus       256 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~  335 (609)
                      +|++||+...   ...                                              ..+.+|...|.+++|++.
T Consensus       167 tv~~Wd~~~~---~~~----------------------------------------------~~~~~~~~~v~~v~~~p~  197 (393)
T 4gq1_A          167 TLIIWRLTDE---GPI----------------------------------------------LAGYPLSSPGISVQFRPS  197 (393)
T ss_dssp             EEEEEEEETT---EEE----------------------------------------------EEEEECSSCEEEEEEETT
T ss_pred             eEEEEECCCC---cee----------------------------------------------eeecCCCCCcEEEEECCC
Confidence            9999998521   110                                              123357788999999876


Q ss_pred             CCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeE
Q 007283          336 DPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS  415 (609)
Q Consensus       336 ~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (609)
                      ++.++++++.|++|++|+...+.............                 ..+                      ...
T Consensus       198 ~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~-----------------~~~----------------------~~s  238 (393)
T 4gq1_A          198 NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVK-----------------NPW----------------------LLT  238 (393)
T ss_dssp             EEEEEEEEETTSEEEEEETTCCC----------CS-----------------CCC----------------------SEE
T ss_pred             CCceEEecCCCCEEEEEECCCCcccccccccCCcc-----------------cce----------------------EEe
Confidence            66789999999999999876542211100000000                 000                      000


Q ss_pred             eeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc-CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCce
Q 007283          416 VALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA-PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAV  494 (609)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s-p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i  494 (609)
                      .......                .......+...+.+++++ |||+.+++++.|+++++||+......  ..+..|...+
T Consensus       239 ~~~~~~~----------------~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~--~~l~~~~~~~  300 (393)
T 4gq1_A          239 LNTLPLV----------------NTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDY--NEISDSTMKL  300 (393)
T ss_dssp             EESGGGC----------------------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC------------------
T ss_pred             cccccce----------------eeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCC--ceEeeecCcc
Confidence            0000000                000001123456777765 89999999999999999998765432  2233444444


Q ss_pred             EEEEECC--------------------CCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeC
Q 007283          495 SVIRYSP--------------------DVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSL  554 (609)
Q Consensus       495 ~~v~~s~--------------------~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~  554 (609)
                      ..+.++|                    ++.++++|+.|++|++||..+++... ....|...|++++|||||++||+++.
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~-~~~~~~~~V~svafspdG~~LA~as~  379 (393)
T 4gq1_A          301 GPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNS-IPIQLGMPIVDFCWHQDGSHLAIATE  379 (393)
T ss_dssp             ---CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCE-EEEECSSCEEEEEECTTSSEEEEEES
T ss_pred             ccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEE-EecCCCCcEEEEEEcCCCCEEEEEeC
Confidence            3333332                    34577889999999999988766533 35678899999999999999999998


Q ss_pred             CCeEEEEEc
Q 007283          555 DTCVIIYEI  563 (609)
Q Consensus       555 D~~v~vw~~  563 (609)
                      || +.+|++
T Consensus       380 ~G-v~lvrL  387 (393)
T 4gq1_A          380 GS-VLLTRL  387 (393)
T ss_dssp             SE-EEEEEE
T ss_pred             CC-eEEEEE
Confidence            77 566654

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.9e-27  Score=260.54  Aligned_cols=250  Identities=20%  Similarity=0.304  Sum_probs=207.1

Q ss_pred             CccCcCceeEEeecCCCCeEEEeC-CCEEEEEeCC--CCccccccccCCCCcEEEEECCC--CCEEEEEeCCCcEEEEcC
Q 007283           12 PSTERGRGILISGHPKSNSILYTN-GRSVIILDLS--NPLQVSIYGEHAYPATVARFSPN--GEWIASADVSGTVRIWGA   86 (609)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~--~~~~~~~~~~h~~~v~~~~~sp~--g~~las~~~d~~i~vWd~   86 (609)
                      ...|++....+.++|+|+.|+++. ++.|.||++.  +......+.+|.+.|++++|+|+  |++|++|+.||+|++||+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~   84 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKE   84 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence            356788889999999999988874 6899999997  44556678899999999999998  999999999999999999


Q ss_pred             CCCce-eeEEEeecccceeEEEECCC--CCEEEEEECCCCcceEEEEEcCCC--CeeEEEecCCccEEEEEEeeC-----
Q 007283           87 HNDHV-LKKEFRVLSGRIDDLQWSPD--GLRIVACGDGKGKSLVRAFMWDSG--TNVGEFDGHSRRVLSCAFKPS-----  156 (609)
Q Consensus        87 ~~~~~-~~~~~~~~~~~v~~~~~spd--g~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~p~-----  156 (609)
                      .+++. ....+..|...|.+++|+|+  +..+++++.+.   .+++|+...+  .....+.+|...|.+++|+|.     
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg---~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~  161 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG---KVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS---EEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC----
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC---cEEEEEeecCCCcceeEeecCCCceEEEEecCcccccc
Confidence            88652 33456778999999999999  99999887544   5777777765  334567899999999999995     


Q ss_pred             -------CCeEEEEecCCCeEEEEeCCCC----ceeeeccCcccceEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCcc
Q 007283          157 -------RPFRIATCGEDFLVNFYEGPPF----KFKLSHRGHSNFVNCVRFSPD---GSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       157 -------~~~~i~t~~~d~~i~~~~~~~~----~~~~~~~~h~~~v~~l~~s~d---g~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                             +...+++|+.|+.|++||....    .....+.+|...|++++|+|+   +.+|++++.|+.|++||..+++.
T Consensus       162 ~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~  241 (753)
T 3jro_A          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG  241 (753)
T ss_dssp             -----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSS
T ss_pred             cccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCC
Confidence                   2335999999999999997654    455677899999999999999   89999999999999999887642


Q ss_pred             c--cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          223 I--GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       223 ~--~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      .  .......+|.+.|++++|+|++++|++++.||.|++|++..
T Consensus       242 ~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          242 PWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             CCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             cceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            1  12222346889999999999999999999999999999874

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.95  E-value=4.9e-26  Score=225.84  Aligned_cols=233  Identities=9%  Similarity=0.010  Sum_probs=183.4

Q ss_pred             EeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCC---------CCce
Q 007283           22 ISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAH---------NDHV   91 (609)
Q Consensus        22 ~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~---------~~~~   91 (609)
                      .+..++++.|+++. ++.|.+||+.+++.+..+.  ...|.+++|+|+   +++++.|++|++|+..         +++.
T Consensus        42 ~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~  116 (343)
T 3lrv_A           42 KSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKV  116 (343)
T ss_dssp             SSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCE
T ss_pred             hhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcce
Confidence            34445667777664 6899999999888776665  466888999998   9999999999999765         3332


Q ss_pred             eeEEEeecccceeEEEECC--CCCEEEEEECCCCcceEEEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCCC
Q 007283           92 LKKEFRVLSGRIDDLQWSP--DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDF  168 (609)
Q Consensus        92 ~~~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~  168 (609)
                      +......|.++|.+++|+|  +++++++++.+.   .+++|+.+.+....... .|...|.+++|+|++. .+++|+.|+
T Consensus       117 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg---~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~-~lasg~~dg  192 (343)
T 3lrv_A          117 LREIEVDSANEIIYMYGHNEVNTEYFIWADNRG---TIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSL-LLALYSPDG  192 (343)
T ss_dssp             EEEEECCCSSCEEEEECCC---CCEEEEEETTC---CEEEEESSSSCEEEEECCCSSCCCCEEEECTTSC-EEEEECTTS
T ss_pred             eEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCC---cEEEEECCCCcEEEEEecCCCCceEEEEECCCCC-EEEEEcCCC
Confidence            3332335567899999999  999999888544   47888888887766554 4556899999999987 499999999


Q ss_pred             eEEEEeCCCCcee-eeccC-cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceE--EEEECCC
Q 007283          169 LVNFYEGPPFKFK-LSHRG-HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY--AVSWSPD  244 (609)
Q Consensus       169 ~i~~~~~~~~~~~-~~~~~-h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~--~l~~spd  244 (609)
                      .|++||...++.. ..+.+ |...|++++|+|+|.+|++++++ .+++||.++++.+..+.....|...+.  +++|+|+
T Consensus       193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (343)
T 3lrv_A          193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS  271 (343)
T ss_dssp             CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred             EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCC-eEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence            9999999888776 67777 99999999999999999999955 999999998877655543223444444  6999999


Q ss_pred             CCeEEEEeC-CCcEEEeeccc
Q 007283          245 GKQVLTASA-DKSAKVWDISE  264 (609)
Q Consensus       245 ~~~l~s~s~-d~~i~iwd~~~  264 (609)
                      +++|++++. |+.+++|++..
T Consensus       272 g~~l~~~s~~d~~i~v~~~~~  292 (343)
T 3lrv_A          272 GKNMIAYSNESNSLTIYKFDK  292 (343)
T ss_dssp             SSEEEEEETTTTEEEEEEECT
T ss_pred             CCEEEEecCCCCcEEEEEEcc
Confidence            999999998 99999999853

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=3e-26  Score=217.55  Aligned_cols=225  Identities=9%  Similarity=-0.005  Sum_probs=167.5

Q ss_pred             eEEEeCCCEEEEEeCCCC---ccccccccCCC-------------------------CcEEEEECCC----CCEEEEEeC
Q 007283           30 SILYTNGRSVIILDLSNP---LQVSIYGEHAY-------------------------PATVARFSPN----GEWIASADV   77 (609)
Q Consensus        30 ~l~~~~~~~~~i~~~~~~---~~~~~~~~h~~-------------------------~v~~~~~sp~----g~~las~~~   77 (609)
                      .|+...-..|.+|+..+.   +..+.+.+|+.                         .|+.++|+||    ++++++++.
T Consensus        56 ~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~  135 (356)
T 2w18_A           56 CIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGN  135 (356)
T ss_dssp             EEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEE
T ss_pred             EEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCC
Confidence            344445568888988887   34444555554                         4667777888    888887553


Q ss_pred             --------------------CCcEEEEcCCCCceeeEEEeecccceeEEEECC---CCCEEEEEECCCCcceEEEEEcCC
Q 007283           78 --------------------SGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSP---DGLRIVACGDGKGKSLVRAFMWDS  134 (609)
Q Consensus        78 --------------------d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~  134 (609)
                                          |++|++|++.+.......+..|...+..++|+|   |+..|++.+.++   .+++|++++
T Consensus       136 ~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~---TIkIWDl~T  212 (356)
T 2w18_A          136 IKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMN---NIVIWNLKT  212 (356)
T ss_dssp             EEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTS---EEEEEETTT
T ss_pred             eEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCC---cEEEEECCC
Confidence                                888999998543334456678888888899998   678899888654   689999999


Q ss_pred             CCeeEEEecCC---ccEEEEEEeeCCCeE-----------EEEecCCCeEEEEeCCCCceeeec-----cCcccceEEEE
Q 007283          135 GTNVGEFDGHS---RRVLSCAFKPSRPFR-----------IATCGEDFLVNFYEGPPFKFKLSH-----RGHSNFVNCVR  195 (609)
Q Consensus       135 ~~~~~~~~~h~---~~v~~~~~~p~~~~~-----------i~t~~~d~~i~~~~~~~~~~~~~~-----~~h~~~v~~l~  195 (609)
                      ++++.++.+|.   ..+.+++|+|++...           +++|+.|+++++|+..+++....+     .+|...+.+..
T Consensus       213 Gk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~  292 (356)
T 2w18_A          213 GQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGD  292 (356)
T ss_dssp             CCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEE
T ss_pred             CcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccc
Confidence            99999998754   357788999998753           367889999999999888765543     47766655444


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceE-EEEECCCCCeEEEEeCCCcEEEeec
Q 007283          196 FSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY-AVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       196 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      ++  +..+|+++.|++|+|||..+++.+.++.   +|...+. +++|+|||++|++|+.|++||+||+
T Consensus       293 ~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~---gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          293 VK--DHCAAAILTSGTIAIWDLLLGQCTALLP---PVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EE--TTEEEEEETTSCEEEEETTTCSEEEEEC---CC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             cC--CCEEEEEcCCCcEEEEECCCCcEEEEec---CCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            43  7789999999999999999999988874   6777655 5899999999999999999999985

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=3e-24  Score=224.89  Aligned_cols=326  Identities=13%  Similarity=0.140  Sum_probs=231.1

Q ss_pred             EECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEc--CCCCeeEEE
Q 007283           64 RFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW--DSGTNVGEF  141 (609)
Q Consensus        64 ~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~  141 (609)
                      +|+|+++++++++.|++|.+||..+++++. .+..... +..++|||||++|++++.+   ..+++|+.  .+.+.+..+
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~-~i~~g~~-~~~v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~~~~~i  218 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVK-VIDTGYA-VHISRMSASGRYLLVIGRD---ARIDMIDLWAKEPTKVAEI  218 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEE-EEECSTT-EEEEEECTTSCEEEEEETT---SEEEEEETTSSSCEEEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEE-EEecCcc-cceEEECCCCCEEEEECCC---CeEEEEECcCCCCcEEEEE
Confidence            489999999999999999999999887543 4543222 8899999999999998865   35777887  566667777


Q ss_pred             ecCCccEEEEEEee----CCCeEEEEecCCCeEEEEeCCCCceeeeccC----------cc-cceEEEEEcCCCC-EEEE
Q 007283          142 DGHSRRVLSCAFKP----SRPFRIATCGEDFLVNFYEGPPFKFKLSHRG----------HS-NFVNCVRFSPDGS-KFIS  205 (609)
Q Consensus       142 ~~h~~~v~~~~~~p----~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~----------h~-~~v~~l~~s~dg~-~l~s  205 (609)
                      .. ...+..++|+|    ++..+++++..++.+.+||..+++....+..          |. ..+..+.++|++. ++++
T Consensus       219 ~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs  297 (543)
T 1nir_A          219 KI-GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVN  297 (543)
T ss_dssp             EC-CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred             ec-CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEE
Confidence            64 45679999999    9987555545689999999988877665543          22 3688999999876 5566


Q ss_pred             EeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe-CCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283          206 VSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS-ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD  284 (609)
Q Consensus       206 ~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  284 (609)
                      ...++.|.+||..+.+.+.... . .+...+..+.|+|+|++|++++ .+++|.+||+..   +++...+....      
T Consensus       298 ~~~~g~i~vvd~~~~~~l~~~~-i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~t---g~l~~~i~~g~------  366 (543)
T 1nir_A          298 VKETGKVLLVNYKDIDNLTVTS-I-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKD---RRLSALVDVGK------  366 (543)
T ss_dssp             ETTTTEEEEEECTTSSSCEEEE-E-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTT---TEEEEEEECSS------
T ss_pred             ECCCCeEEEEEecCCCcceeEE-e-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCC---CeEEEeeccCC------
Confidence            7788999999988766443111 0 2445678899999999876554 589999999862   33322221000      


Q ss_pred             eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc
Q 007283          285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR  364 (609)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~  364 (609)
                                                          ..|......                                   
T Consensus       367 ------------------------------------~ph~g~g~~-----------------------------------  375 (543)
T 1nir_A          367 ------------------------------------TPHPGRGAN-----------------------------------  375 (543)
T ss_dssp             ------------------------------------SBCCTTCEE-----------------------------------
T ss_pred             ------------------------------------CCCCCCCcc-----------------------------------
Confidence                                                001111000                                   


Q ss_pred             ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe
Q 007283          365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI  444 (609)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (609)
                                                                                                      
T Consensus       376 --------------------------------------------------------------------------------  375 (543)
T 1nir_A          376 --------------------------------------------------------------------------------  375 (543)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCceeEEEEcCC-CCEEEEEe-CCCcEEEEEecCC-----eeeeeEEEecCCCceEEEEECCCCCEEEEEe-------
Q 007283          445 NLRFPVTASAIAPD-GSEAIIGS-QDGKLRVYSIRGD-----TLTEEAVLEKHRGAVSVIRYSPDVSMFASGD-------  510 (609)
Q Consensus       445 ~~~~~~~~~~~sp~-g~~l~~gs-~dg~i~iw~~~~~-----~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s-------  510 (609)
                               .++|+ |..++++. .|++|.+|++.+.     ......++..|.+.+..|+|+||+++|.+++       
T Consensus       376 ---------~~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~  446 (543)
T 1nir_A          376 ---------FVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR  446 (543)
T ss_dssp             ---------EEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHH
T ss_pred             ---------cCCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcc
Confidence                     01343 33444443 4667777776551     0223466778888889999999999999987       


Q ss_pred             CCCeEEEEEccCCceEEeee--------cCCCCceEEEEECCCCcEEEEE-----eCCCeEEEEEcCCC
Q 007283          511 VNREAIVWDRVSREVKLKNM--------LYHTARINCLAWSPNNSMVATG-----SLDTCVIIYEIDKP  566 (609)
Q Consensus       511 ~d~~v~iwd~~~~~~~~~~~--------~~h~~~i~~l~~s~d~~~l~s~-----s~D~~v~vw~~~~~  566 (609)
                      .+++|.+||+.+.+...+.+        ..+...+..++|+|||++|+.+     +.|++|.|||..+.
T Consensus       447 ~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~  515 (543)
T 1nir_A          447 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  515 (543)
T ss_dssp             HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             cCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCc
Confidence            37899999998776542322        3567889999999999998866     25899999998764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.94  E-value=2.2e-23  Score=218.41  Aligned_cols=329  Identities=12%  Similarity=0.114  Sum_probs=234.0

Q ss_pred             EEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc-CcccceEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCccccccCc
Q 007283          152 AFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR-GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG--KTADKIGELSP  228 (609)
Q Consensus       152 ~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~--~~~~~~~~~~~  228 (609)
                      +|+|++. .+++++.|+.+.+||..+++....+. ++.  +..++|+|||++|++++.|++|.+||.  .+++.+..+. 
T Consensus       144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-  219 (543)
T 1nir_A          144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-  219 (543)
T ss_dssp             CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-
T ss_pred             ccCCCCE-EEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-
Confidence            3778774 68889999999999999998887776 444  889999999999999999999999999  7777776663 


Q ss_pred             CCCCccceEEEEECC----CCCeEEEEeC-CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCC
Q 007283          229 EDGHKGSVYAVSWSP----DGKQVLTASA-DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGG  303 (609)
Q Consensus       229 ~~~h~~~V~~l~~sp----d~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  303 (609)
                         +...+.+++|+|    ||+++++++. +++|.+||..   .++.++.+...+.                      . 
T Consensus       220 ---~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~---t~~~~~~i~~~g~----------------------~-  270 (543)
T 1nir_A          220 ---IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGE---TLEPKQIVSTRGM----------------------T-  270 (543)
T ss_dssp             ---CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETT---TCCEEEEEECCEE----------------------C-
T ss_pred             ---cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecc---ccccceeecccCc----------------------c-
Confidence               344689999999    9999999884 8999999975   3444444321100                      0 


Q ss_pred             cEEEEeCCCCCCCceeeeCCC-CCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEE
Q 007283          304 TISIFSANDLEKSPLQLSGHM-KNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVT  382 (609)
Q Consensus       304 ~i~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (609)
                            ..       ....|. ..+..+.+++..+.++++...+++|.+|+........                     
T Consensus       271 ------~~-------~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~---------------------  316 (543)
T 1nir_A          271 ------VD-------TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLT---------------------  316 (543)
T ss_dssp             ------SS-------SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCE---------------------
T ss_pred             ------cC-------ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcce---------------------
Confidence                  00       000122 2566777776566788888899999999754321000                     


Q ss_pred             EeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEE
Q 007283          383 SGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEA  462 (609)
Q Consensus       383 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l  462 (609)
                            +                                                    ..+.....+..++|+|+|+++
T Consensus       317 ------~----------------------------------------------------~~i~~~~~~~~~~~spdg~~l  338 (543)
T 1nir_A          317 ------V----------------------------------------------------TSIGAAPFLHDGGWDSSHRYF  338 (543)
T ss_dssp             ------E----------------------------------------------------EEEECCSSCCCEEECTTSCEE
T ss_pred             ------e----------------------------------------------------EEeccCcCccCceECCCCCEE
Confidence                  0                                                    000001124567899999987


Q ss_pred             EEE-eCCCcEEEEEecCCeeeeeEEEe----cCCCceEEEEECCC-CCEEEEEe-CCCeEEEEEccCC------ceEEee
Q 007283          463 IIG-SQDGKLRVYSIRGDTLTEEAVLE----KHRGAVSVIRYSPD-VSMFASGD-VNREAIVWDRVSR------EVKLKN  529 (609)
Q Consensus       463 ~~g-s~dg~i~iw~~~~~~~~~~~~~~----~h~~~i~~v~~s~~-~~~l~s~s-~d~~v~iwd~~~~------~~~~~~  529 (609)
                      +++ ..+++|.+||..++.+..  .+.    .|.+....+ ++|+ +.+++++. .|++|.+||..+.      -..++.
T Consensus       339 ~va~~~~~~v~v~D~~tg~l~~--~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~  415 (543)
T 1nir_A          339 MTAANNSNKVAVIDSKDRRLSA--LVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAE  415 (543)
T ss_dssp             EEEEGGGTEEEEEETTTTEEEE--EEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEE
T ss_pred             EEEecCCCeEEEEECCCCeEEE--eeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEE
Confidence            655 468999999999887643  333    266554444 4677 77778776 6899999998761      123456


Q ss_pred             ecCCCCceEEEEECCCCcEEEEEe-------CCCeEEEEEcCCCCCcceeE-------eccccCCeEEEEEc-CCCeEEE
Q 007283          530 MLYHTARINCLAWSPNNSMVATGS-------LDTCVIIYEIDKPASSRMTI-------KGAHLGGVYGLAFT-DEHSVVS  594 (609)
Q Consensus       530 ~~~h~~~i~~l~~s~d~~~l~s~s-------~D~~v~vw~~~~~~~~~~~~-------~~~h~~~v~~~~~s-~~~~l~s  594 (609)
                      +..|...+..++||||+++|++++       .+++|.|||+.+.......+       +..|..++..+.|+ +++.+..
T Consensus       416 l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~  495 (543)
T 1nir_A          416 LQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWF  495 (543)
T ss_dssp             EECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEE
T ss_pred             EEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEE
Confidence            777888889999999999999987       37899999998654221122       23567889999999 7776653


Q ss_pred             E-----eCCCcEEEEEccC
Q 007283          595 S-----GEDACVRVWRLTP  608 (609)
Q Consensus       595 ~-----s~D~~i~~W~~~~  608 (609)
                      +     +.|+.|.+||..+
T Consensus       496 s~~~~~~~~~~i~v~D~~t  514 (543)
T 1nir_A          496 SVWNGKNDSSALVVVDDKT  514 (543)
T ss_dssp             EEECCTTSCCEEEEEETTT
T ss_pred             EeecCCCCCCeEEEEECCC
Confidence            3     2589999999753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=4.5e-24  Score=216.93  Aligned_cols=304  Identities=15%  Similarity=0.144  Sum_probs=221.9

Q ss_pred             CCcEEEEECCCCC-EEEEEe----CCC----cEEEEcC--CCCcee-eEEEeecccceeEEEECC--------------C
Q 007283           58 YPATVARFSPNGE-WIASAD----VSG----TVRIWGA--HNDHVL-KKEFRVLSGRIDDLQWSP--------------D  111 (609)
Q Consensus        58 ~~v~~~~~sp~g~-~las~~----~d~----~i~vWd~--~~~~~~-~~~~~~~~~~v~~~~~sp--------------d  111 (609)
                      ..+...+|++.|. ++++|+    .||    +|+|||+  .+++.+ ...+..|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4577778888874 666776    467    8999999  877644 356788888888877775              2


Q ss_pred             CCEEEEEECCCCc---ceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC---eEEEEeCCCCceeeecc
Q 007283          112 GLRIVACGDGKGK---SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF---LVNFYEGPPFKFKLSHR  185 (609)
Q Consensus       112 g~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~---~i~~~~~~~~~~~~~~~  185 (609)
                      +.+++.++.+.+.   ..+++|+.+ +.....+.+|...|.+++|+|++.. ++.++.++   .+.+||..+++.. .+.
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~-g~~~~~l~~~~~~v~~~~~Spdg~~-la~~s~~~~~~~i~~~d~~tg~~~-~l~  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYD-GYNQFVVHRSPQPLMSPAWSPDGSK-LAYVTFESGRSALVIQTLANGAVR-QVA  219 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETT-SCSCEEEEEESSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTTCCEE-EEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCC-CCCCEEEeCCCCcceeeEEcCCCCE-EEEEEecCCCcEEEEEECCCCcEE-Eee
Confidence            6677776654222   456666665 4456778889999999999999985 77777664   8999999887764 456


Q ss_pred             CcccceEEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC-CC--cEEE
Q 007283          186 GHSNFVNCVRFSPDGSKFI-SVSSDKK--GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-DK--SAKV  259 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~-s~~~d~~--i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~--~i~i  259 (609)
                      +|...+.+++|+|||+.|+ +++.++.  |.+||..+++.. .+   ..|...+.+++|+|||++|+.++. ++  .|++
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l---~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~  295 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QV---TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYK  295 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EC---CCCSSCEEEEEECTTSSEEEEEECTTSSCEEEE
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eC---cCCCCcccceEECCCCCEEEEEECCCCCcEEEE
Confidence            6778899999999999888 5666654  899999887653 33   357788999999999999988876 44  3444


Q ss_pred             eecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCE
Q 007283          260 WDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKV  339 (609)
Q Consensus       260 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  339 (609)
                      ||+..   ++.                                               ..+..|                
T Consensus       296 ~d~~~---~~~-----------------------------------------------~~l~~~----------------  309 (415)
T 2hqs_A          296 VNING---GAP-----------------------------------------------QRITWE----------------  309 (415)
T ss_dssp             EETTS---SCC-----------------------------------------------EECCCS----------------
T ss_pred             EECCC---CCE-----------------------------------------------EEEecC----------------
Confidence            45431   000                                               000000                


Q ss_pred             EEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeecc
Q 007283          340 ILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALH  419 (609)
Q Consensus       340 ~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (609)
                                                                                                      
T Consensus       310 --------------------------------------------------------------------------------  309 (415)
T 2hqs_A          310 --------------------------------------------------------------------------------  309 (415)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCC---CcEEEEEecCCeeeeeEEEecCCCceEE
Q 007283          420 YPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQD---GKLRVYSIRGDTLTEEAVLEKHRGAVSV  496 (609)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~d---g~i~iw~~~~~~~~~~~~~~~h~~~i~~  496 (609)
                                                 ...+..++++|||++++.++.+   ..|++|++.++..   ..+..|. .+.+
T Consensus       310 ---------------------------~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~---~~l~~~~-~~~~  358 (415)
T 2hqs_A          310 ---------------------------GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV---QVLSSTF-LDET  358 (415)
T ss_dssp             ---------------------------SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE---EECCCSS-SCEE
T ss_pred             ---------------------------CCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE---EEecCCC-CcCC
Confidence                                       0013445789999999888765   5899999987654   2344554 8999


Q ss_pred             EEECCCCCEEEEEeCCC---eEEEEEccCCceEEeeecCCCCceEEEEECCCCc
Q 007283          497 IRYSPDVSMFASGDVNR---EAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS  547 (609)
Q Consensus       497 v~~s~~~~~l~s~s~d~---~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~  547 (609)
                      ++|+|||+++++++.++   .+++||+.++..  ..+..|...|.+++|||...
T Consensus       359 ~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~--~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          359 PSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK--ARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             EEECTTSSEEEEEEEETTEEEEEEEETTSCCE--EECCCSSSEEEEEEECCCCC
T ss_pred             eEEcCCCCEEEEEEcCCCccEEEEEECCCCcE--EEeeCCCCCCcCCccccccc
Confidence            99999999999998877   899999875543  34678999999999999643

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.1e-23  Score=231.68  Aligned_cols=328  Identities=11%  Similarity=0.095  Sum_probs=224.8

Q ss_pred             CCCcEEEEECCCCCEEEEEeC-CC-----cEEEEcCCCCceeeEEEeecc------------------------cceeEE
Q 007283           57 AYPATVARFSPNGEWIASADV-SG-----TVRIWGAHNDHVLKKEFRVLS------------------------GRIDDL  106 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~-d~-----~i~vWd~~~~~~~~~~~~~~~------------------------~~v~~~  106 (609)
                      ...+..++|||||++||+++. |+     +|++||+.+++.. ..+..+.                        ..+..+
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTR-LLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEE-EEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCcee-EccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            346999999999999999988 88     8999999887632 2233222                        237899


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCCCC--eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGT--NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH  184 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~  184 (609)
                      +|||||++|++++.    ..+.+|+.+.+.  ....+..|...+..++|+|++.. |+.++ ++.+.+|+...++.....
T Consensus       115 ~~SpDg~~l~~~~~----~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~-la~~~-~~~i~~~d~~~g~~~~~~  188 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG----GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGF-VSFIR-GRNLWVIDLASGRQMQLT  188 (741)
T ss_dssp             EECTTSSEEEEEET----TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSE-EEEEE-TTEEEEEETTTTEEEECC
T ss_pred             EECCCCCEEEEEeC----CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCE-EEEEe-CCcEEEEecCCCCEEEec
Confidence            99999999999886    235555555552  44556778888999999999985 66555 458999998877665544


Q ss_pred             cCcccc----------------eEEEEEcCCCCEEEEEeCCC---------------------------------cEEEE
Q 007283          185 RGHSNF----------------VNCVRFSPDGSKFISVSSDK---------------------------------KGIIY  215 (609)
Q Consensus       185 ~~h~~~----------------v~~l~~s~dg~~l~s~~~d~---------------------------------~i~iw  215 (609)
                      ..+...                +..++|+|||++|++++.|+                                 .+.+|
T Consensus       189 ~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~  268 (741)
T 2ecf_A          189 ADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVI  268 (741)
T ss_dssp             CCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEE
T ss_pred             cCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEE
Confidence            444332                47799999999999988765                                 78889


Q ss_pred             eCCC-CccccccCcCCCCccceEEEEECCCCCeEEEEeC-----CCcEEEeecccCCCCceEEEeccCCCCCccceEEEE
Q 007283          216 DGKT-ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-----DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGC  289 (609)
Q Consensus       216 d~~~-~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      |..+ ++..... ....|...+.+++| |||++|+.++.     +..|++||+..   ++...                 
T Consensus       269 d~~~~~~~~~~~-~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~---g~~~~-----------------  326 (741)
T 2ecf_A          269 SPAEQAQTQWID-LGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLAS---NQQRV-----------------  326 (741)
T ss_dssp             CSSTTCCCEEEC-CCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTT---CCEEE-----------------
T ss_pred             ECCCCCceEEec-CCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCC---CceEE-----------------
Confidence            9887 6643322 11247788999999 99999987764     34455555431   10000                 


Q ss_pred             EEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccc
Q 007283          290 LWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQ  369 (609)
Q Consensus       290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~  369 (609)
                                                                        +.....++    |                 
T Consensus       327 --------------------------------------------------~~~~~~~~----~-----------------  335 (741)
T 2ecf_A          327 --------------------------------------------------LAHETSPT----W-----------------  335 (741)
T ss_dssp             --------------------------------------------------EEEEECSS----C-----------------
T ss_pred             --------------------------------------------------EEEcCCCC----c-----------------
Confidence                                                              00000000    0                 


Q ss_pred             eeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCc
Q 007283          370 IKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFP  449 (609)
Q Consensus       370 ~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  449 (609)
                      +                                                                             ..
T Consensus       336 ~-----------------------------------------------------------------------------~~  338 (741)
T 2ecf_A          336 V-----------------------------------------------------------------------------PL  338 (741)
T ss_dssp             C-----------------------------------------------------------------------------CC
T ss_pred             C-----------------------------------------------------------------------------Cc
Confidence            0                                                                             01


Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEE-EECCCCCEEE-EEeCCC--eEEEEEccCCce
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVI-RYSPDVSMFA-SGDVNR--EAIVWDRVSREV  525 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v-~~s~~~~~l~-s~s~d~--~v~iwd~~~~~~  525 (609)
                      +..++++|||+++++++.||.++||.++....  ...+..|...|..+ .|+|||+.++ +++.++  ++++|++.....
T Consensus       339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~--~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~  416 (741)
T 2ecf_A          339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK--AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGG  416 (741)
T ss_dssp             CSCCEECTTSCEEEEECTTSSCEEEEECSSSC--EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCC
T ss_pred             CCceEECCCCeEEEEecCCCccEEEEEcCCCC--eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCC
Confidence            23456899999999999999888988763221  34566778888887 5999998775 445555  899998754222


Q ss_pred             EEeeecCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEcC
Q 007283          526 KLKNMLYHTARINCLAWSPNNSMVATGSLD----TCVIIYEID  564 (609)
Q Consensus       526 ~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D----~~v~vw~~~  564 (609)
                      ....+. ....+.+++||||+++|+....+    ..+.+|+..
T Consensus       417 ~~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~~~~  458 (741)
T 2ecf_A          417 QPQRLS-KAPGMHSASFARNASVYVDSWSNNSTPPQIELFRAN  458 (741)
T ss_dssp             CCEECC-CSCSEEEEEECTTSSEEEEEEEETTEEEEEEEEETT
T ss_pred             Ceeecc-cCCCceEEEECCCCCEEEEEecCCCCCCeEEEEEcC
Confidence            222233 36678899999999988765443    467888764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=1.5e-23  Score=213.15  Aligned_cols=299  Identities=14%  Similarity=0.078  Sum_probs=212.5

Q ss_pred             cEEEEEEeeCCCeEEEEec----CCC----eEEEEeC--CCCcee--eeccCcccceEEEEEcC--------------CC
Q 007283          147 RVLSCAFKPSRPFRIATCG----EDF----LVNFYEG--PPFKFK--LSHRGHSNFVNCVRFSP--------------DG  200 (609)
Q Consensus       147 ~v~~~~~~p~~~~~i~t~~----~d~----~i~~~~~--~~~~~~--~~~~~h~~~v~~l~~s~--------------dg  200 (609)
                      .+...+|.+.+...+++|+    .|+    .+++||.  .+++..  ..+.+|...+..+++++              .+
T Consensus        64 ~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~  143 (415)
T 2hqs_A           64 EVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFR  143 (415)
T ss_dssp             GCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             CcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCC
Confidence            4555566777766676765    456    8999999  887765  45788888777777764              25


Q ss_pred             CEEEEEeCC------CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC---cEEEeecccCCCCceE
Q 007283          201 SKFISVSSD------KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK---SAKVWDISEDNHGKLK  271 (609)
Q Consensus       201 ~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~---~i~iwd~~~~~~~~~~  271 (609)
                      ..++.++.+      +.+++||...+. ...+   .+|...|.+++|+|||++|++++.|+   .|++||+..   ++..
T Consensus       144 ~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~~l---~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~t---g~~~  216 (415)
T 2hqs_A          144 TRIAYVVQTNGGQFPYELRVSDYDGYN-QFVV---HRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN---GAVR  216 (415)
T ss_dssp             CEEEEEEECSSSSCCEEEEEEETTSCS-CEEE---EEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT---CCEE
T ss_pred             CEEEEEEecCCCCccceEEEEcCCCCC-CEEE---eCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCC---CcEE
Confidence            677777654      799999987533 3333   36888999999999999999999875   899999863   2111


Q ss_pred             EEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCc--E
Q 007283          272 KTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL--I  349 (609)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~--i  349 (609)
                                                                     .+..|...+.+++|++....++++++.|+.  |
T Consensus       217 -----------------------------------------------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          217 -----------------------------------------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             -----------------------------------------------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             -----------------------------------------------EeecCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence                                                           122345567778887543334447777665  6


Q ss_pred             EEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEec
Q 007283          350 VKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTD  429 (609)
Q Consensus       350 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (609)
                      .+|+...+....                                                                    
T Consensus       250 ~~~d~~~~~~~~--------------------------------------------------------------------  261 (415)
T 2hqs_A          250 YVMDLASGQIRQ--------------------------------------------------------------------  261 (415)
T ss_dssp             EEEETTTCCEEE--------------------------------------------------------------------
T ss_pred             EEEECCCCCEEe--------------------------------------------------------------------
Confidence            666543211000                                                                    


Q ss_pred             ccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeC-CC--cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEE
Q 007283          430 SGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQ-DG--KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF  506 (609)
Q Consensus       430 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~-dg--~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l  506 (609)
                                   ...+...+.+++++|||++++.++. ++  .|++|++.++..   ..+..|...+.+++|||||+++
T Consensus       262 -------------l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~---~~l~~~~~~~~~~~~spdG~~l  325 (415)
T 2hqs_A          262 -------------VTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAP---QRITWEGSQNQDADVSSDGKFM  325 (415)
T ss_dssp             -------------CCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCC---EECCCSSSEEEEEEECTTSSEE
T ss_pred             -------------CcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCE---EEEecCCCcccCeEECCCCCEE
Confidence                         0001123677899999999998886 45  567777766543   3345677789999999999999


Q ss_pred             EEEeCC---CeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCC---eEEEEEcCCCCCcceeEeccccCC
Q 007283          507 ASGDVN---REAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDT---CVIIYEIDKPASSRMTIKGAHLGG  580 (609)
Q Consensus       507 ~s~s~d---~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~---~v~vw~~~~~~~~~~~~~~~h~~~  580 (609)
                      ++++.+   ..+++||+.+++..  .+..|. .+.+++|+|||++|++++.|+   .|.+||++..   ....+.+|.+.
T Consensus       326 ~~~~~~~g~~~i~~~d~~~~~~~--~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~---~~~~l~~~~~~  399 (415)
T 2hqs_A          326 VMVSSNGGQQHIAKQDLATGGVQ--VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR---FKARLPATDGQ  399 (415)
T ss_dssp             EEEEECSSCEEEEEEETTTCCEE--ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC---CEEECCCSSSE
T ss_pred             EEEECcCCceEEEEEECCCCCEE--EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC---cEEEeeCCCCC
Confidence            988875   68999999876652  344454 899999999999999988887   7999998632   24455679999


Q ss_pred             eEEEEEcCC
Q 007283          581 VYGLAFTDE  589 (609)
Q Consensus       581 v~~~~~s~~  589 (609)
                      |.+++|++.
T Consensus       400 v~~~~~~~~  408 (415)
T 2hqs_A          400 VKFPAWSPY  408 (415)
T ss_dssp             EEEEEECCC
T ss_pred             CcCCccccc
Confidence            999999965

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=3.9e-23  Score=226.59  Aligned_cols=358  Identities=11%  Similarity=0.039  Sum_probs=217.9

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeeccc---ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSG---RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG  135 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  135 (609)
                      .+..++|+|||+++++ +.||+|++||..+++.. ..+..+..   .|..++|||||++|++..++...       |   
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~-~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~-------~---   85 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTST-VLIEGKKIESLRAIRYEISPDREYALFSYNVEPI-------Y---   85 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCE-EEECTTTTTTTTCSEEEECTTSSEEEEEESCCCC-------S---
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEE-EEeccccccccccceEEECCCCCEEEEEecCccc-------e---
Confidence            4678899999998877 68999999999887642 33444433   48999999999999887643311       0   


Q ss_pred             CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee--eeccCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283          136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK--LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI  213 (609)
Q Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~--~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~  213 (609)
                                                 ..+.++.+.+||..+++..  ....+|...+.+++|||||+.||+++. +.++
T Consensus        86 ---------------------------~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~  137 (723)
T 1xfd_A           86 ---------------------------QHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIY  137 (723)
T ss_dssp             ---------------------------SSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEE
T ss_pred             ---------------------------eecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEE
Confidence                                       0123455777877665542  122345556888999999999999886 7899


Q ss_pred             EEeCCCCccccccCcCCCCcc------------------ceEEEEECCCCCeEEEEeCC-CcEEEeecccCCCCceEEEe
Q 007283          214 IYDGKTADKIGELSPEDGHKG------------------SVYAVSWSPDGKQVLTASAD-KSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       214 iwd~~~~~~~~~~~~~~~h~~------------------~V~~l~~spd~~~l~s~s~d-~~i~iwd~~~~~~~~~~~~~  274 (609)
                      +||..+++......   .+..                  .+.+++|||||++|++++.| +.+++|++.....       
T Consensus       138 ~~~~~~g~~~~~~~---~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~-------  207 (723)
T 1xfd_A          138 YCAHVGKQAIRVVS---TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTG-------  207 (723)
T ss_dssp             EESSSSSCCEEEEC---CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSS-------
T ss_pred             EEECCCCceEEEec---CCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCC-------
Confidence            99998876543321   2222                  23789999999999998765 4566666431000       


Q ss_pred             ccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283          275 TPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~  354 (609)
                                                                     .+...+..+.+... +..    ..+..|.+|+.
T Consensus       208 -----------------------------------------------~~~~~~~~~~~~~~-G~~----~~~~~l~~~d~  235 (723)
T 1xfd_A          208 -----------------------------------------------SIYPTVKPYHYPKA-GSE----NPSISLHVIGL  235 (723)
T ss_dssp             -----------------------------------------------SSSCCCEEEECCBT-TSC----CCEEEEEEEES
T ss_pred             -----------------------------------------------cCCCcceeccCCCC-CCC----CCeeEEEEEEC
Confidence                                                           00011222222211 110    12335666654


Q ss_pred             CccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEE
Q 007283          355 GIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVL  434 (609)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  434 (609)
                      ..+......                               .                      ..               
T Consensus       236 ~~~~~~~~l-------------------------------~----------------------~~---------------  247 (723)
T 1xfd_A          236 NGPTHDLEM-------------------------------M----------------------PP---------------  247 (723)
T ss_dssp             SSSCCCEEC-------------------------------C----------------------CC---------------
T ss_pred             CCCceeEEe-------------------------------e----------------------CC---------------
Confidence            322100000                               0                      00               


Q ss_pred             eeCCeeeEEeccCCceeEEEEcCCCCEEEEEeC----CCcEEEEEecCCeeeeeEEE-ecCCCceE----EEEECCCCCE
Q 007283          435 LRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQ----DGKLRVYSIRGDTLTEEAVL-EKHRGAVS----VIRYSPDVSM  505 (609)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~----dg~i~iw~~~~~~~~~~~~~-~~h~~~i~----~v~~s~~~~~  505 (609)
                          .  ........+..++++|||+++++.+.    +..|++||+.++...  ..+ ..+.+.+.    .++|||||+.
T Consensus       248 ----~--~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~--~~~~~~~~~~~~~~~~~~~~spdg~~  319 (723)
T 1xfd_A          248 ----D--DPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT--KKHEDESEAWLHRQNEEPVFSKDGRK  319 (723)
T ss_dssp             ----C--CGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE--EEEEEECSSCCCCCCCCCEECTTSCS
T ss_pred             ----c--cCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce--EEEEeccCCEEeccCCCceEcCCCCe
Confidence                0  00000123677899999998877653    357999999877643  222 23444443    7899999997


Q ss_pred             EEE--EeCCC------eEEEEE-ccCCce-EEeeecCCCCceEE-EEECCCCcEEEEEeCC---CeEEEEEcCCCCCcce
Q 007283          506 FAS--GDVNR------EAIVWD-RVSREV-KLKNMLYHTARINC-LAWSPNNSMVATGSLD---TCVIIYEIDKPASSRM  571 (609)
Q Consensus       506 l~s--~s~d~------~v~iwd-~~~~~~-~~~~~~~h~~~i~~-l~~s~d~~~l~s~s~D---~~v~vw~~~~~~~~~~  571 (609)
                      ++.  +..++      .+++|| ..++.. ....+..+...+.. ++|||||++|+..+.+   +.+.+|+++..+....
T Consensus       320 l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~  399 (723)
T 1xfd_A          320 FFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR  399 (723)
T ss_dssp             EEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCC
T ss_pred             EEEEEecccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCc
Confidence            774  45676      567777 333320 01223333444554 6999999998766555   8899999875331111


Q ss_pred             eEecc---ccCCeEEEEEc-CCCeEEE
Q 007283          572 TIKGA---HLGGVYGLAFT-DEHSVVS  594 (609)
Q Consensus       572 ~~~~~---h~~~v~~~~~s-~~~~l~s  594 (609)
                      ..+..   |...+..++|| |++.|+.
T Consensus       400 ~~l~~~~~~~~~~~~~~~spdg~~l~~  426 (723)
T 1xfd_A          400 QCLSCDLVENCTYFSASFSHSMDFFLL  426 (723)
T ss_dssp             BCSSTTSSSSCCCCEEEECTTSSEEEE
T ss_pred             ceecccccCCCCeEEEEECCCCCEEEE
Confidence            11222   67789999999 6676553

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.91  E-value=1.2e-21  Score=214.03  Aligned_cols=328  Identities=14%  Similarity=0.155  Sum_probs=207.3

Q ss_pred             CCeEEEeCCCEEEEEeCCCCccc-cccccCC-----------------CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283           28 SNSILYTNGRSVIILDLSNPLQV-SIYGEHA-----------------YPATVARFSPNGEWIASADVSGTVRIWGAHND   89 (609)
Q Consensus        28 ~~~l~~~~~~~~~i~~~~~~~~~-~~~~~h~-----------------~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~   89 (609)
                      |+.+++..+..| +||+.+++.. ..+..|.                 ..|.+++|||| ++++.+ .|++|++||+.++
T Consensus        35 g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~~~~  111 (706)
T 2z3z_A           35 GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDMLAR  111 (706)
T ss_dssp             TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEETTTT
T ss_pred             CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEECCCC
Confidence            567777765558 9999888772 2333332                 46999999999 555544 3599999999876


Q ss_pred             ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-----CCeeEEEecCCccEEEEEEeeCCCeEEEEe
Q 007283           90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-----GTNVGEFDGHSRRVLSCAFKPSRPFRIATC  164 (609)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~  164 (609)
                      +.  ..+..+...+..++|||||++|+.+.++    .+.+|+.+.     +........+..           .  +.  
T Consensus       112 ~~--~~l~~~~~~~~~~~~SpdG~~la~~~~~----~i~v~~~~~~~~~~g~~~~~~~~~~~-----------~--~~--  170 (706)
T 2z3z_A          112 KV--TYLFDTNEETASLDFSPVGDRVAYVRNH----NLYIARGGKLGEGMSRAIAVTIDGTE-----------T--LV--  170 (706)
T ss_dssp             EE--EEEECCTTCCTTCEECTTSSEEEEEETT----EEEEEECBCTTSCCCCCEESCSCCBT-----------T--EE--
T ss_pred             ce--EEccCCcccccCCcCCCCCCEEEEEECC----eEEEEecCcccccCCCcEEeccCCCC-----------C--eE--
Confidence            53  2344566778999999999999987542    244444333     222111100000           0  00  


Q ss_pred             cCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe---------------------------------CCCc
Q 007283          165 GEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS---------------------------------SDKK  211 (609)
Q Consensus       165 ~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~---------------------------------~d~~  211 (609)
                               ...+     ....+...+.++.|+|||++|++++                                 .+..
T Consensus       171 ---------~g~~-----~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~  236 (706)
T 2z3z_A          171 ---------YGQA-----VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVT  236 (706)
T ss_dssp             ---------ESSC-----CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEE
T ss_pred             ---------cccc-----hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeE
Confidence                     1000     1122334567899999999999987                                 4467


Q ss_pred             EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC-----cEEEeecccCCCCceEEEeccCCCCCccceE
Q 007283          212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK-----SAKVWDISEDNHGKLKKTLTPSGSGGVDDML  286 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~  286 (609)
                      +.+||..+++..... ....|...+.+++|+|||++|++++.++     .|++||+..   ++....             
T Consensus       237 l~~~d~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~---g~~~~~-------------  299 (706)
T 2z3z_A          237 VGIYHLATGKTVYLQ-TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAET---GRFVRT-------------  299 (706)
T ss_dssp             EEEEETTTTEEEECC-CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTT---CCEEEE-------------
T ss_pred             EEEEECCCCceEeec-cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCC---CceeeE-------------
Confidence            999999887754322 1224677899999999999999887665     666666541   100000             


Q ss_pred             EEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283          287 VGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE  366 (609)
Q Consensus       287 ~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~  366 (609)
                                                                           +.......    |              
T Consensus       300 -----------------------------------------------------~~~~~~~~----~--------------  308 (706)
T 2z3z_A          300 -----------------------------------------------------LFVETDKH----Y--------------  308 (706)
T ss_dssp             -----------------------------------------------------EEEEECSS----C--------------
T ss_pred             -----------------------------------------------------EEEccCCC----e--------------
Confidence                                                                 00000000    0              


Q ss_pred             ccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEecc
Q 007283          367 NSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINL  446 (609)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  446 (609)
                                                                                                      
T Consensus       309 --------------------------------------------------------------------------------  308 (706)
T 2z3z_A          309 --------------------------------------------------------------------------------  308 (706)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCceeEEEEcC--CCCEEEEEeCCCcEEEEEec-CCeeeeeEEEecCCCceEE-EEECCCCCEEEEEeCC-C----eEEE
Q 007283          447 RFPVTASAIAP--DGSEAIIGSQDGKLRVYSIR-GDTLTEEAVLEKHRGAVSV-IRYSPDVSMFASGDVN-R----EAIV  517 (609)
Q Consensus       447 ~~~~~~~~~sp--~g~~l~~gs~dg~i~iw~~~-~~~~~~~~~~~~h~~~i~~-v~~s~~~~~l~s~s~d-~----~v~i  517 (609)
                      ...+..++++|  ||+++++++.|+.+++|.++ .+..  ...+..|...+.. ++|+|||+.++.++.+ +    .++.
T Consensus       309 ~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~--~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          309 VEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRL--IRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYC  386 (706)
T ss_dssp             CCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCE--EEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEE
T ss_pred             ECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCE--EEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEE
Confidence            00123356889  99999999999999999886 3322  2445667777876 8999999887665544 3    6777


Q ss_pred             EEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC----CeEEEEEcCCC
Q 007283          518 WDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD----TCVIIYEIDKP  566 (609)
Q Consensus       518 wd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D----~~v~vw~~~~~  566 (609)
                      ||..++..  + ...|...+.+++|||||++|+....+    +.|.+||+...
T Consensus       387 ~d~~~~~~--~-~l~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          387 IDIKGGKT--K-DLTPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             EETTCCCC--E-ESCCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSSC
T ss_pred             EEcCCCCc--e-eccCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCCC
Confidence            77766542  2 23477789999999999988876443    56999998753

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.5e-22  Score=222.51  Aligned_cols=234  Identities=10%  Similarity=0.062  Sum_probs=173.4

Q ss_pred             ceeEEeecCCCCeEEEeC--CC-----EEEEEeCCCCccccccccCCC------------------------CcEEEEEC
Q 007283           18 RGILISGHPKSNSILYTN--GR-----SVIILDLSNPLQVSIYGEHAY------------------------PATVARFS   66 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~--~~-----~~~i~~~~~~~~~~~~~~h~~------------------------~v~~~~~s   66 (609)
                      .+..++++|||+.|++..  ++     .+.+||+.+++....+..|..                        .|..++||
T Consensus        38 ~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S  117 (741)
T 2ecf_A           38 TLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWS  117 (741)
T ss_dssp             CCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEEC
T ss_pred             CCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEEC
Confidence            456899999999998874  34     899999998876555554433                        38899999


Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCC---ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec
Q 007283           67 PNGEWIASADVSGTVRIWGAHND---HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG  143 (609)
Q Consensus        67 p~g~~las~~~d~~i~vWd~~~~---~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (609)
                      |||++|++++. ++|++||+.++   +.  ..+..+...+..++|||||++|+.+.++    .+.+|+.+.+........
T Consensus       118 pDg~~l~~~~~-~~i~~~d~~~~~~~~~--~~l~~~~~~~~~~~~SPDG~~la~~~~~----~i~~~d~~~g~~~~~~~~  190 (741)
T 2ecf_A          118 PDAQRLLFPLG-GELYLYDLKQEGKAAV--RQLTHGEGFATDAKLSPKGGFVSFIRGR----NLWVIDLASGRQMQLTAD  190 (741)
T ss_dssp             TTSSEEEEEET-TEEEEEESSSCSTTSC--CBCCCSSSCEEEEEECTTSSEEEEEETT----EEEEEETTTTEEEECCCC
T ss_pred             CCCCEEEEEeC-CcEEEEECCCCCcceE--EEcccCCcccccccCCCCCCEEEEEeCC----cEEEEecCCCCEEEeccC
Confidence            99999998876 99999999876   43  2355667789999999999999998764    345555555443332333


Q ss_pred             CCcc----------------EEEEEEeeCCCeEEEEecCCC---------------------------------eEEEEe
Q 007283          144 HSRR----------------VLSCAFKPSRPFRIATCGEDF---------------------------------LVNFYE  174 (609)
Q Consensus       144 h~~~----------------v~~~~~~p~~~~~i~t~~~d~---------------------------------~i~~~~  174 (609)
                      +...                +..++|+|++.. |+.++.|.                                 .+.+||
T Consensus       191 ~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~-l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d  269 (741)
T 2ecf_A          191 GSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA-IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS  269 (741)
T ss_dssp             CCSSEEESCCCHHHHHHSCCCCSEEECTTSSC-EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred             CccceeccccceeeeeccccccceEECCCCCE-EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence            3322                467999999986 55554443                                 677888


Q ss_pred             CCC-Cceeeecc--CcccceEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCccccccCcCCCCcc----ceEEEEEC
Q 007283          175 GPP-FKFKLSHR--GHSNFVNCVRFSPDGSKFISVSS-----DKKGIIYDGKTADKIGELSPEDGHKG----SVYAVSWS  242 (609)
Q Consensus       175 ~~~-~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~-----d~~i~iwd~~~~~~~~~~~~~~~h~~----~V~~l~~s  242 (609)
                      ... ++......  .|...+..++| |||+.|++++.     +..+.+||..+++....+.   .+..    .+.+++|+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          270 PAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH---ETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             SSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEE---EECSSCCCCCSCCEEC
T ss_pred             CCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEE---cCCCCcCCcCCceEEC
Confidence            777 66544332  47788999999 99999887764     5679999998887654432   1221    45689999


Q ss_pred             CCCCeEEEEeCCCcEEEeecc
Q 007283          243 PDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       243 pd~~~l~s~s~d~~i~iwd~~  263 (609)
                      |||+++++++.|+.+++|.++
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEEC
T ss_pred             CCCeEEEEecCCCccEEEEEc
Confidence            999999999999988888764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.90  E-value=7.9e-22  Score=216.24  Aligned_cols=231  Identities=11%  Similarity=0.074  Sum_probs=160.7

Q ss_pred             CceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCC---CcEEEEECCCCCEEEEEeCC---------CcEEEE
Q 007283           17 GRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAY---PATVARFSPNGEWIASADVS---------GTVRIW   84 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~---~v~~~~~sp~g~~las~~~d---------~~i~vW   84 (609)
                      ..+..++++|||++++...++.+.+||+.+++....+.+|..   .|..++|||||++||+++.+         +++.+|
T Consensus        17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            446688999999966554557999999999887777777765   49999999999999998764         678899


Q ss_pred             cCCCCceeeEEEee---cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCcc--------------
Q 007283           85 GAHNDHVLKKEFRV---LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRR--------------  147 (609)
Q Consensus        85 d~~~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--------------  147 (609)
                      |+.+++.  ..+..   +...+..++|||||++|+.+.++    .+++|+.+.+........+...              
T Consensus        97 d~~~~~~--~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~----~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee  170 (723)
T 1xfd_A           97 KIPHGDP--QSLDPPEVSNAKLQYAGWGPKGQQLIFIFEN----NIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEE  170 (723)
T ss_dssp             ESSSCCC--EECCCTTCCSCCCSBCCBCSSTTCEEEEETT----EEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHT
T ss_pred             ECCCCce--EeccCCccccccccccEECCCCCEEEEEECC----eEEEEECCCCceEEEecCCCCCceECcccceeEEEE
Confidence            9988764  22332   33348899999999999998863    2444444445444444443332              


Q ss_pred             ----EEEEEEeeCCCeEEEEecCC-CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283          148 ----VLSCAFKPSRPFRIATCGED-FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       148 ----v~~~~~~p~~~~~i~t~~~d-~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                          +.+++|+|++.. |+.++.| ..+..|+.....     ..+...+..+.|.++|..    ..+..+.+||..+++.
T Consensus       171 ~~~~~~~~~~SpDg~~-la~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~G~~----~~~~~l~~~d~~~~~~  240 (723)
T 1xfd_A          171 ILKTHIAHWWSPDGTR-LAYAAINDSRVPIMELPTYT-----GSIYPTVKPYHYPKAGSE----NPSISLHVIGLNGPTH  240 (723)
T ss_dssp             TSSSSEEEEECTTSSE-EEEEEEECTTSCEEEECCCS-----SSSSCCCEEEECCBTTSC----CCEEEEEEEESSSSCC
T ss_pred             eccCcceEEECCCCCE-EEEEEECCCccceEEeeccC-----CcCCCcceeccCCCCCCC----CCeeEEEEEECCCCce
Confidence                278999999986 5555433 345555533211     113345788999998863    3456899999988775


Q ss_pred             ccccCcC---CCCccceEEEEECCCCCeEEEEeC----CCcEEEeecc
Q 007283          223 IGELSPE---DGHKGSVYAVSWSPDGKQVLTASA----DKSAKVWDIS  263 (609)
Q Consensus       223 ~~~~~~~---~~h~~~V~~l~~spd~~~l~s~s~----d~~i~iwd~~  263 (609)
                      ...+...   ..+...+.+++|+|||++|++.+.    +..|++||+.
T Consensus       241 ~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~  288 (723)
T 1xfd_A          241 DLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT  288 (723)
T ss_dssp             CEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred             eEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCC
Confidence            4444211   123677999999999998877653    3578889876

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=3.7e-20  Score=183.28  Aligned_cols=189  Identities=11%  Similarity=0.124  Sum_probs=131.7

Q ss_pred             EEEEEeCCCcEEEEcCCC-CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC--CCC--eeEEEecCC
Q 007283           71 WIASADVSGTVRIWGAHN-DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD--SGT--NVGEFDGHS  145 (609)
Q Consensus        71 ~las~~~d~~i~vWd~~~-~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~--~~~--~~~~~~~h~  145 (609)
                      ++++++.|++|++|++.. +.........+...+..++|+|||++|++++.+.  ..+++|+.+  .+.  .+..+..+.
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPE--FRVLAYRIAPDDGALTFAAESALPG   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTT--TEEEEEEECTTTCCEEEEEEEECSS
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCC--CeEEEEEecCCCCceeeccccccCC
Confidence            445557899999999863 3222222234566789999999999998887643  246677776  333  233444444


Q ss_pred             ccEEEEEEeeCCCeEEEEecCCCeEEEEeC---CCCceeeeccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-C
Q 007283          146 RRVLSCAFKPSRPFRIATCGEDFLVNFYEG---PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKT-A  220 (609)
Q Consensus       146 ~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~---~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~-~  220 (609)
                       .+..++|+|++..+++++..++.+.+|+.   ...+....+..+ ..+.+++|+|+|+.|++++ .++.+.+||..+ +
T Consensus        85 -~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~  162 (343)
T 1ri6_A           85 -SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDG  162 (343)
T ss_dssp             -CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             -CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCC
Confidence             78899999999976677777899999997   333333444433 3588899999999888777 899999999877 4


Q ss_pred             cccccc--CcCCCCccceEEEEECCCCCeEEEEe-CCCcEEEeecc
Q 007283          221 DKIGEL--SPEDGHKGSVYAVSWSPDGKQVLTAS-ADKSAKVWDIS  263 (609)
Q Consensus       221 ~~~~~~--~~~~~h~~~V~~l~~spd~~~l~s~s-~d~~i~iwd~~  263 (609)
                      +.....  .........+..++|+|++++++.++ .++.+++|++.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~  208 (343)
T 1ri6_A          163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK  208 (343)
T ss_dssp             CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESS
T ss_pred             ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEec
Confidence            432110  00112234688999999999776554 78999999975

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=6e-20  Score=180.94  Aligned_cols=236  Identities=9%  Similarity=-0.013  Sum_probs=167.1

Q ss_pred             EeecCCCCeEEEe--CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCCCceeeEEEee
Q 007283           22 ISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHNDHVLKKEFRV   98 (609)
Q Consensus        22 ~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~~~~~~~~~~~   98 (609)
                      +.+.++++.++..  .++.+.+||+.+++....+..+..++ .++|+|+|++|+.++ .++.|.+||..+++.....+..
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~   81 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQE   81 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEeccc
Confidence            4455666664433  35799999999888766666666667 999999999776555 4899999999887753445556


Q ss_pred             cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCe-EEEEeCCC
Q 007283           99 LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL-VNFYEGPP  177 (609)
Q Consensus        99 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~-i~~~~~~~  177 (609)
                      +..+..+++|+|||++|++...+.....+.+|+.+.++.+..+..+. ....++|+|++..+++++..++. +.+|+...
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~  160 (331)
T 3u4y_A           82 GQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY-DAVGIAISPNGNGLILIDRSSANTVRRFKIDA  160 (331)
T ss_dssp             CSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT-TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred             CCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC-CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence            66666669999999999943322122256777777777766665543 46899999999876777777677 99998654


Q ss_pred             Ccee----eeccCcccceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcc---ccccCcCCCCccceEEEEECCCCCeEE
Q 007283          178 FKFK----LSHRGHSNFVNCVRFSPDGSKFISV-SSDKKGIIYDGKTADK---IGELSPEDGHKGSVYAVSWSPDGKQVL  249 (609)
Q Consensus       178 ~~~~----~~~~~h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd~~~~~~---~~~~~~~~~h~~~V~~l~~spd~~~l~  249 (609)
                      ....    ............++|+|||++++.+ ..++.+.+||..+++.   +..+.    ....+..++|+|||++++
T Consensus       161 ~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~~~~spdg~~l~  236 (331)
T 3u4y_A          161 DGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG----TNNLPGTIVVSRDGSTVY  236 (331)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE----CSSCCCCEEECTTSSEEE
T ss_pred             CCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc----CCCCCceEEECCCCCEEE
Confidence            2211    1111233457899999999965554 4688999999998887   55442    235678899999999776


Q ss_pred             EEe-CCCcEEEeecc
Q 007283          250 TAS-ADKSAKVWDIS  263 (609)
Q Consensus       250 s~s-~d~~i~iwd~~  263 (609)
                      .++ .++.|.+||+.
T Consensus       237 v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          237 VLTESTVDVFNFNQL  251 (331)
T ss_dssp             EECSSEEEEEEEETT
T ss_pred             EEEcCCCEEEEEECC
Confidence            554 57889999986

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=2.1e-19  Score=177.01  Aligned_cols=283  Identities=11%  Similarity=0.116  Sum_probs=186.1

Q ss_pred             EEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcc-ccccCcC
Q 007283          152 AFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKTADK-IGELSPE  229 (609)
Q Consensus       152 ~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd~~~~~~-~~~~~~~  229 (609)
                      .|.+++...+++++.++.+.+||..+++.......+...+ +++|+|+|+++++++. ++.+.+||..+++. ...+.  
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~--   80 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQ--   80 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEE--
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecc--
Confidence            4566777778999999999999999888876666556666 9999999996666655 88999999988876 44432  


Q ss_pred             CCCccceEEEEECCCCCeEEEEeCCC---cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEE
Q 007283          230 DGHKGSVYAVSWSPDGKQVLTASADK---SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTIS  306 (609)
Q Consensus       230 ~~h~~~V~~l~~spd~~~l~s~s~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~  306 (609)
                       .+.....+++|+|+|+++++...++   .|++||+..   ++....+.                               
T Consensus        81 -~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~---~~~~~~~~-------------------------------  125 (331)
T 3u4y_A           81 -EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLK---NKFISTIP-------------------------------  125 (331)
T ss_dssp             -ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTT---TEEEEEEE-------------------------------
T ss_pred             -cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCC---CCeEEEEE-------------------------------
Confidence             3444444599999999999555443   899999863   22222211                               


Q ss_pred             EEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCc-EEEEecCccccceeccccccceeEeeeeCCcEEEEec
Q 007283          307 IFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL-IVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGF  385 (609)
Q Consensus       307 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~-i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (609)
                                      +......+++++....++++...++. |.+|+.+...          .+          ...  
T Consensus       126 ----------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g----------~~----------~~~--  167 (331)
T 3u4y_A          126 ----------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADG----------VL----------FDT--  167 (331)
T ss_dssp             ----------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTC----------CE----------EEE--
T ss_pred             ----------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCC----------cE----------eec--
Confidence                            01123466666544446667677788 9999654210          00          000  


Q ss_pred             cceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEE-
Q 007283          386 DNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII-  464 (609)
Q Consensus       386 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~-  464 (609)
                                                                           . ...+........++++|||+++++ 
T Consensus       168 -----------------------------------------------------~-~~~~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          168 -----------------------------------------------------G-QEFISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             -----------------------------------------------------E-EEEECSSSSEEEEEECTTSSEEEEE
T ss_pred             -----------------------------------------------------C-CccccCCCCccceEECCCCCEEEEE
Confidence                                                                 0 000011123567889999996554 


Q ss_pred             EeCCCcEEEEEecCCeeee-eEEEecCCCceEEEEECCCCCEEEEEe-CCCeEEEEEccCCceEE-eeecC----CCC--
Q 007283          465 GSQDGKLRVYSIRGDTLTE-EAVLEKHRGAVSVIRYSPDVSMFASGD-VNREAIVWDRVSREVKL-KNMLY----HTA--  535 (609)
Q Consensus       465 gs~dg~i~iw~~~~~~~~~-~~~~~~h~~~i~~v~~s~~~~~l~s~s-~d~~v~iwd~~~~~~~~-~~~~~----h~~--  535 (609)
                      +..++.|++|++.++.... ...+. ....+..++|+|||+++++++ .++.+.+||..+++... ..+..    +..  
T Consensus       194 ~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  272 (331)
T 3u4y_A          194 NLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPL  272 (331)
T ss_dssp             ETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGG
T ss_pred             eCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCc
Confidence            4568999999998765411 22333 346778999999999766554 57889999988765421 11111    122  


Q ss_pred             -ceEEEEECCCCcEEEEEe-CCCeEEEEEcCC
Q 007283          536 -RINCLAWSPNNSMVATGS-LDTCVIIYEIDK  565 (609)
Q Consensus       536 -~i~~l~~s~d~~~l~s~s-~D~~v~vw~~~~  565 (609)
                       ...+++|+||+++|+.++ .+++|.+||+..
T Consensus       273 ~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          273 FGANQMALNKTETKLFISANISRELKVFTISG  304 (331)
T ss_dssp             TTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred             ccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence             235689999999886555 567999999875

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.88  E-value=7.7e-21  Score=183.72  Aligned_cols=220  Identities=13%  Similarity=0.074  Sum_probs=164.2

Q ss_pred             CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC-CceeeEEEeec-ccceeEEEECCCCC
Q 007283           36 GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHN-DHVLKKEFRVL-SGRIDDLQWSPDGL  113 (609)
Q Consensus        36 ~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~-~~~~~~~~~~~-~~~v~~~~~spdg~  113 (609)
                      ...+.+||+.+++... +..|.+.|.+++|+|||++||+++ ++.|++||+.+ ++.. .....+ ...+..++|+|||+
T Consensus        21 ~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~~spdg~   97 (297)
T 2ojh_A           21 RSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE-KVDTGFATICNNDHGISPDGA   97 (297)
T ss_dssp             CEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE-ECCCTTCCCBCSCCEECTTSS
T ss_pred             ceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce-EeccccccccccceEECCCCC
Confidence            3689999998877654 566889999999999999999986 78999999988 6532 223333 35788999999999


Q ss_pred             EEEEEECCCCcceEEEEEcCCC-CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC-CceeeeccCcccce
Q 007283          114 RIVACGDGKGKSLVRAFMWDSG-TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP-FKFKLSHRGHSNFV  191 (609)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~-~~~~~~~~~h~~~v  191 (609)
                      +|+++....+ ...++|.++.. .....+..+. .+..++|+|++..++++++.++.+.+|+... ......+..|...+
T Consensus        98 ~l~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  175 (297)
T 2ojh_A           98 LYAISDKVEF-GKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRN  175 (297)
T ss_dssp             EEEEEECTTT-SSCEEEEEETTCCCCEECCSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCE
T ss_pred             EEEEEEeCCC-CcceEEEEECCCCceEEeecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCcc
Confidence            9999884322 23457777642 2234444443 4888999999997666888899899997432 22334556677889


Q ss_pred             EEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCccccccCcCCCCccceEEEEECCCCCeEEEEeCC-----------CcEE
Q 007283          192 NCVRFSPDGSKFISVS-SDKKGIIYDGK-TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-----------KSAK  258 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-----------~~i~  258 (609)
                      .++.|+|+|+.|+.++ .++.+.+|+.. .+..+..+   ..|...+.+++|+|++++|+.++.+           +.|+
T Consensus       176 ~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          176 DGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERI---TDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEEC---CCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             ccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEE---ecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            9999999999888766 58899999865 33344444   3567789999999999999988876           4588


Q ss_pred             Eeecc
Q 007283          259 VWDIS  263 (609)
Q Consensus       259 iwd~~  263 (609)
                      +||+.
T Consensus       253 ~~d~~  257 (297)
T 2ojh_A          253 LMDMD  257 (297)
T ss_dssp             EEETT
T ss_pred             EEecC
Confidence            88875

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.87  E-value=2.5e-19  Score=177.27  Aligned_cols=280  Identities=11%  Similarity=0.058  Sum_probs=176.9

Q ss_pred             CeEEEEecCCCeEEEEeCC-CCce-eeeccCcccceEEEEEcCCCCEEEEEeCC-CcEEEEeCC--CCcc--ccccCcCC
Q 007283          158 PFRIATCGEDFLVNFYEGP-PFKF-KLSHRGHSNFVNCVRFSPDGSKFISVSSD-KKGIIYDGK--TADK--IGELSPED  230 (609)
Q Consensus       158 ~~~i~t~~~d~~i~~~~~~-~~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-~~i~iwd~~--~~~~--~~~~~~~~  230 (609)
                      ..++++++.|+.+.+|+.. .++. ......|...+.+++|+|+|++|++++.+ +.+.+|+..  +++.  +..+.   
T Consensus         5 ~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~---   81 (343)
T 1ri6_A            5 QTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA---   81 (343)
T ss_dssp             EEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE---
T ss_pred             EEEEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccc---
Confidence            3456777889999999874 3322 12223466778999999999988888876 899999986  4442  22221   


Q ss_pred             CCccceEEEEECCCCCeEEEEeC-CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          231 GHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       231 ~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      . .+.+..++|+|++++|++++. ++.|++||+......+.....                                   
T Consensus        82 ~-~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~-----------------------------------  125 (343)
T 1ri6_A           82 L-PGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVV-----------------------------------  125 (343)
T ss_dssp             C-SSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEE-----------------------------------
T ss_pred             c-CCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccc-----------------------------------
Confidence            2 236889999999998876665 888999998411001111100                                   


Q ss_pred             CCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEe-cCCcEEEEecCc-cccceeccccccceeEeeeeCCcEEEEeccc
Q 007283          310 ANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSS-YDGLIVKWIQGI-GYGGKLQRKENSQIKCFAAIEEEIVTSGFDN  387 (609)
Q Consensus       310 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s-~dg~i~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  387 (609)
                                 . ....+.++++++ +++.+++++ .|+.|.+|+... +.           +.....            
T Consensus       126 -----------~-~~~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~~-----------~~~~~~------------  169 (343)
T 1ri6_A          126 -----------E-GLDGCHSANISP-DNRTLWVPALKQDRICLFTVSDDGH-----------LVAQDP------------  169 (343)
T ss_dssp             -----------C-CCTTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTSC-----------EEEEEE------------
T ss_pred             -----------c-CCCCceEEEECC-CCCEEEEecCCCCEEEEEEecCCCc-----------eeeecc------------
Confidence                       0 111244555654 344455554 899999997642 10           000000            


Q ss_pred             eEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEe-
Q 007283          388 KIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGS-  466 (609)
Q Consensus       388 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs-  466 (609)
                      .  .+                                                  .......+..++++|+|+++++++ 
T Consensus       170 ~--~~--------------------------------------------------~~~~~~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          170 A--EV--------------------------------------------------TTVEGAGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             E--EE--------------------------------------------------ECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             c--cc--------------------------------------------------ccCCCCCcceEEECCCCCEEEEEeC
Confidence            0  00                                                  000112356788999999776554 


Q ss_pred             CCCcEEEEEecC--CeeeeeEEEe----cC--CCceEEEEECCCCCEEE-EEeCCCeEEEEEcc--CCce-EEeeecCCC
Q 007283          467 QDGKLRVYSIRG--DTLTEEAVLE----KH--RGAVSVIRYSPDVSMFA-SGDVNREAIVWDRV--SREV-KLKNMLYHT  534 (609)
Q Consensus       467 ~dg~i~iw~~~~--~~~~~~~~~~----~h--~~~i~~v~~s~~~~~l~-s~s~d~~v~iwd~~--~~~~-~~~~~~~h~  534 (609)
                      .++.|++|++..  +.+.......    ++  ...+..++|+|+|++++ ++..++.+++||+.  ++.. .+..+..+.
T Consensus       198 ~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~  277 (343)
T 1ri6_A          198 LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET  277 (343)
T ss_dssp             TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS
T ss_pred             CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC
Confidence            789999999953  3332122222    11  23567899999998777 55579999999987  2222 222233333


Q ss_pred             CceEEEEECCCCcEEEEEe-CCCeEEEEEcCC
Q 007283          535 ARINCLAWSPNNSMVATGS-LDTCVIIYEIDK  565 (609)
Q Consensus       535 ~~i~~l~~s~d~~~l~s~s-~D~~v~vw~~~~  565 (609)
                       .+.+++|+||+++|++++ .|+.|.+|+++.
T Consensus       278 -~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~  308 (343)
T 1ri6_A          278 -QPRGFNVDHSGKYLIAAGQKSHHISVYEIVG  308 (343)
T ss_dssp             -SCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred             -ccceEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence             388999999999888887 689999997764

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.86  E-value=9.3e-21  Score=183.12  Aligned_cols=236  Identities=16%  Similarity=0.098  Sum_probs=176.2

Q ss_pred             cCceeEEeecCCCCeEEEeCCCEEEEEeCCC-CccccccccC-CCCcEEEEECCCCCEEEEEe--CCCcEEEEcCCCCce
Q 007283           16 RGRGILISGHPKSNSILYTNGRSVIILDLSN-PLQVSIYGEH-AYPATVARFSPNGEWIASAD--VSGTVRIWGAHNDHV   91 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~-~~~~~~~~~h-~~~v~~~~~sp~g~~las~~--~d~~i~vWd~~~~~~   91 (609)
                      .+....+.++|+|+.|++...+.+.+||+.+ ++....+.+| ...+.+++|+|||++|++++  .++..+||.++....
T Consensus        41 ~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           41 PELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGG  120 (297)
T ss_dssp             SSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred             CcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence            4566789999999999998888999999988 7766666566 46789999999999999988  446777776643221


Q ss_pred             eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283           92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV  170 (609)
Q Consensus        92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i  170 (609)
                      ....+..+ ..+..++|+|||++|+.++....  .+++|.++. ......+..|...+.+++|+|++..+++++..++.+
T Consensus       121 ~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~  197 (297)
T 2ojh_A          121 TPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQ--VFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQM  197 (297)
T ss_dssp             CCEECCSS-SSEEEEEECTTSSEEEEEEEETT--EEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             ceEEeecC-CCccceEECCCCCEEEEEECCCC--ceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCCCCc
Confidence            12233333 34888999999999885543222  356777654 234456677888999999999998766666678888


Q ss_pred             EEEeCC-CCceeeeccCcccceEEEEEcCCCCEEEEEeCC-----------CcEEEEeCCCCccccccCcCCCCccceEE
Q 007283          171 NFYEGP-PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD-----------KKGIIYDGKTADKIGELSPEDGHKGSVYA  238 (609)
Q Consensus       171 ~~~~~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~  238 (609)
                      .+|+.. .......+..|...+.++.|+|+|++|++++.+           ..+.+||..+++..... ...+|...+.+
T Consensus       198 ~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~~~~~~~  276 (297)
T 2ojh_A          198 QIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLF-DLFGGQGTMNS  276 (297)
T ss_dssp             EEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEE-EEEESTTTSCS
T ss_pred             cEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeee-ccCCCCccccc
Confidence            898764 344455667788889999999999999888765           56999998877643222 12257778999


Q ss_pred             EEECCCCCeEEEEeCCC
Q 007283          239 VSWSPDGKQVLTASADK  255 (609)
Q Consensus       239 l~~spd~~~l~s~s~d~  255 (609)
                      ++|+|++++|++++.+.
T Consensus       277 ~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          277 PNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CCBCTTSSEEEEEEECC
T ss_pred             ceECCCCCEEEEEEecc
Confidence            99999999999887664

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.86  E-value=3e-19  Score=195.15  Aligned_cols=363  Identities=8%  Similarity=-0.008  Sum_probs=204.9

Q ss_pred             EEEEeeCCCeEEEEecCCCeEEEEeCCCCcee-eeccCcc-----------------cceEEEEEcCCCCEEEEEeCCCc
Q 007283          150 SCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-LSHRGHS-----------------NFVNCVRFSPDGSKFISVSSDKK  211 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~-~~~~~h~-----------------~~v~~l~~s~dg~~l~s~~~d~~  211 (609)
                      .+.|.  +. .++.++.|+ | +||..+++.. ..+..|.                 ..|.+++|+|| +.++.+ .++.
T Consensus        30 ~~~w~--g~-~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~  102 (706)
T 2z3z_A           30 GLQWM--GD-NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGG  102 (706)
T ss_dssp             TCEEE--TT-EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTE
T ss_pred             CCcCc--CC-eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCE
Confidence            35566  33 355666677 7 9998877662 2322322                 46999999999 666655 4599


Q ss_pred             EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccC--CCCceEEEeccCCCCCccceEEEE
Q 007283          212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISED--NHGKLKKTLTPSGSGGVDDMLVGC  289 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  289 (609)
                      +.+||..+++.....    .+.+.+.+++|||||++|+++ .|+.|++||+...  ..++...... .+...        
T Consensus       103 i~~~d~~~~~~~~l~----~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~-~~~~~--------  168 (706)
T 2z3z_A          103 LVGFDMLARKVTYLF----DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTI-DGTET--------  168 (706)
T ss_dssp             EEEEETTTTEEEEEE----CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCS-CCBTT--------
T ss_pred             EEEEECCCCceEEcc----CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEecc-CCCCC--------
Confidence            999999887654322    355678899999999999995 6899999998630  0022211111 00000        


Q ss_pred             EEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecC-CcEEEEecCccccceecccccc
Q 007283          290 LWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYD-GLIVKWIQGIGYGGKLQRKENS  368 (609)
Q Consensus       290 ~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~d-g~i~~W~~~~~~~~~~~~~~~~  368 (609)
                            +          .+...       ....+...+.++.|++ +++.++.++.| ..+..+.......      ...
T Consensus       169 ------~----------~~g~~-------~~~ee~~~~~~~~~Sp-Dg~~la~~~~d~~~~~~~~~~~~~~------~~~  218 (706)
T 2z3z_A          169 ------L----------VYGQA-------VHQREFGIEKGTFWSP-KGSCLAFYRMDQSMVKPTPIVDYHP------LEA  218 (706)
T ss_dssp             ------E----------EESSC-------CGGGCTTCCCSEEECT-TSSEEEEEEEECTTSCCEEEEECCS------SSC
T ss_pred             ------e----------Ecccc-------hhhhhcCCCceEEECC-CCCEEEEEEECCCCCceEEeeccCC------CCC
Confidence                  0          00000       0111233455667764 45677776633 2222221100000      000


Q ss_pred             ceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCC
Q 007283          369 QIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF  448 (609)
Q Consensus       369 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  448 (609)
                      ...........  ....+..+++|++.+....                                 .+..     ......
T Consensus       219 ~~~~~~y~~~g--~~~~~~~l~~~d~~~~~~~---------------------------------~~~~-----~~~~~~  258 (706)
T 2z3z_A          219 ESKPLYYPMAG--TPSHHVTVGIYHLATGKTV---------------------------------YLQT-----GEPKEK  258 (706)
T ss_dssp             EEEEECCCBTT--SCCCEEEEEEEETTTTEEE---------------------------------ECCC-----CSCTTC
T ss_pred             ceEEeeCCCCC--CCCCeeEEEEEECCCCceE---------------------------------eecc-----CCCCce
Confidence            00000000000  0011234555554332110                                 0000     001123


Q ss_pred             ceeEEEEcCCCCEEEEEeCCC-----cEEEEEecCC-eeeeeEEEecCCC---ceEEEEECC--CCCEEEEEeCCCeEEE
Q 007283          449 PVTASAIAPDGSEAIIGSQDG-----KLRVYSIRGD-TLTEEAVLEKHRG---AVSVIRYSP--DVSMFASGDVNREAIV  517 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg-----~i~iw~~~~~-~~~~~~~~~~h~~---~i~~v~~s~--~~~~l~s~s~d~~v~i  517 (609)
                      .+..++++|||+++++++.|+     .|++||+.++ .... .....+..   .+..+.|+|  ||+++++++.|+.+++
T Consensus       259 ~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~-~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l  337 (706)
T 2z3z_A          259 FLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRT-LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHL  337 (706)
T ss_dssp             EEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEE-EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEE
T ss_pred             eEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeE-EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEE
Confidence            467899999999999988776     8999999877 3321 11122222   346789999  9999999999999999


Q ss_pred             EEccCCceEEeeecCCCCceEE-EEECCCCcEEEEEeCC-C----eEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCC
Q 007283          518 WDRVSREVKLKNMLYHTARINC-LAWSPNNSMVATGSLD-T----CVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEH  590 (609)
Q Consensus       518 wd~~~~~~~~~~~~~h~~~i~~-l~~s~d~~~l~s~s~D-~----~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~  590 (609)
                      |++.........+..|...+.+ ++|+||+++|+.++.+ +    .|..|+.....   .... .|...+.+++|| |++
T Consensus       338 ~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~---~~~l-~~~~~~~~~~~spdg~  413 (706)
T 2z3z_A          338 YLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK---TKDL-TPESGMHRTQLSPDGS  413 (706)
T ss_dssp             EEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC---CEES-CCSSSEEEEEECTTSS
T ss_pred             EEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC---ceec-cCCCceEEEEECCCCC
Confidence            9865222234455667777877 8999999887665544 3    44445544322   2222 377789999999 777


Q ss_pred             eEEEEeCC----CcEEEEEccC
Q 007283          591 SVVSSGED----ACVRVWRLTP  608 (609)
Q Consensus       591 ~l~s~s~D----~~i~~W~~~~  608 (609)
                      +|+....+    +.+.+|++..
T Consensus       414 ~l~~~~~~~~~p~~i~l~d~~~  435 (706)
T 2z3z_A          414 AIIDIFQSPTVPRKVTVTNIGK  435 (706)
T ss_dssp             EEEEEEECSSCSCEEEEEESSS
T ss_pred             EEEEEecCCCCCcEEEEEECCC
Confidence            77655433    5699999753

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.84  E-value=3.6e-19  Score=189.71  Aligned_cols=138  Identities=13%  Similarity=0.088  Sum_probs=113.3

Q ss_pred             eEEEEcCCCCEEEEEeCC----CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCC--eEEEEEccCCc
Q 007283          451 TASAIAPDGSEAIIGSQD----GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR--EAIVWDRVSRE  524 (609)
Q Consensus       451 ~~~~~sp~g~~l~~gs~d----g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~--~v~iwd~~~~~  524 (609)
                      ..++++|||+++|.++.|    +.|++||+.++..   ..+..|.+.+..++|||||+.+++++.++  +|++||+.+++
T Consensus       153 ~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~---~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~  229 (582)
T 3o4h_A          153 FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL---RVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGS  229 (582)
T ss_dssp             CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC---EEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCC
T ss_pred             ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc---eEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCc
Confidence            456789999999988877    7899999887664   35678889999999999999999888898  89999998776


Q ss_pred             eEEeeecCCCCceEEEE--------ECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEe
Q 007283          525 VKLKNMLYHTARINCLA--------WSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSG  596 (609)
Q Consensus       525 ~~~~~~~~h~~~i~~l~--------~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s  596 (609)
                      ..  .+..|...+..++        |||||+++++++.|+++++|++  +.  ...   .+.+.|.+++|++++.+++++
T Consensus       230 ~~--~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~--~~~---~~~~~v~~~~~sdg~~l~~~s  300 (582)
T 3o4h_A          230 VE--DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GE--RVE---APQGNHGRVVLWRGKLVTSHT  300 (582)
T ss_dssp             EE--ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TE--EEC---CCSSEEEEEEEETTEEEEEEE
T ss_pred             EE--EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CC--eec---cCCCceEEEEecCCEEEEEEc
Confidence            54  4566777777777        9999999999999999999998  22  111   345678999999777888887


Q ss_pred             CCCc
Q 007283          597 EDAC  600 (609)
Q Consensus       597 ~D~~  600 (609)
                      .+.+
T Consensus       301 ~~~~  304 (582)
T 3o4h_A          301 SLST  304 (582)
T ss_dssp             ETTE
T ss_pred             CCCC
Confidence            7755

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=7.1e-18  Score=167.57  Aligned_cols=203  Identities=12%  Similarity=0.086  Sum_probs=156.9

Q ss_pred             CCCcEEEEECCCCCEEEEEeC-------CCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           57 AYPATVARFSPNGEWIASADV-------SGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~-------d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      ...+..++|+|+|++|+.++.       +++|.+||..+++... .+.. ...+..++|+|||+++++++....  .+.+
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~-~~~~~~~~~s~dg~~l~v~~~~~~--~v~~  115 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQ-AIHN-DLKPFGATINNTTQTLWFGNTVNS--AVTA  115 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEE-EEEE-SSCCCSEEEETTTTEEEEEETTTT--EEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEE-EEec-CCCcceEEECCCCCEEEEEecCCC--EEEE
Confidence            456889999999999887764       5689999998876433 3332 345788999999998877765432  4667


Q ss_pred             EEcCCCCeeEEEecCCc---------cEEEEEEeeCCCeEEEEe-cCCCeEEEEeCCCCceeeeccCcccceEEEEEcCC
Q 007283          130 FMWDSGTNVGEFDGHSR---------RVLSCAFKPSRPFRIATC-GEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPD  199 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~---------~v~~~~~~p~~~~~i~t~-~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~d  199 (609)
                      ++.++++.+..+..+..         .+..++|+|++..+++++ +.++.+.+||..+++....+..+...+.+++|+|+
T Consensus       116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d  195 (353)
T 3vgz_A          116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSE  195 (353)
T ss_dssp             EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETT
T ss_pred             EeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCC
Confidence            77777777777765432         278899999998766665 56889999999988887777656666889999999


Q ss_pred             CCEEEEEeCCCcEEEEeCCCCccccccCc-CCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecc
Q 007283          200 GSKFISVSSDKKGIIYDGKTADKIGELSP-EDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDIS  263 (609)
Q Consensus       200 g~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~  263 (609)
                      |+.|++++.++.+.+||..+++.+..+.. ..++...+.+++|+|++++++.++. ++.|.+||+.
T Consensus       196 g~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~  261 (353)
T 3vgz_A          196 GKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTR  261 (353)
T ss_dssp             TTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETT
T ss_pred             CCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECC
Confidence            99999999999999999998887665532 1235667889999999997766654 5899999986

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=1.7e-19  Score=197.39  Aligned_cols=324  Identities=11%  Similarity=0.055  Sum_probs=205.9

Q ss_pred             eeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCC---CcEEEEECCCCCEEEEEeC---------CCcEEEEcC
Q 007283           19 GILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAY---PATVARFSPNGEWIASADV---------SGTVRIWGA   86 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~---~v~~~~~sp~g~~las~~~---------d~~i~vWd~   86 (609)
                      +..+.++|||+.++...++.+.+||+.+++....+.+|..   .+.+++|||||++||+++.         |++|++||+
T Consensus        18 ~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           18 TFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             CCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            3477899999655555567999999999887666665543   4899999999999998876         789999999


Q ss_pred             CCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccE-----------------
Q 007283           87 HNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRV-----------------  148 (609)
Q Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v-----------------  148 (609)
                      .+++.+.  .......+..++|||||++|+.+.++    .+++|+.+.+...... .++...|                 
T Consensus        98 ~~g~~~~--~~~l~~~~~~~~~SPDG~~la~~~~~----~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~  171 (719)
T 1z68_A           98 SNGEFVR--GNELPRPIQYLCWSPVGSKLAYVYQN----NIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATK  171 (719)
T ss_dssp             TTTEECC--SSCCCSSBCCEEECSSTTCEEEEETT----EEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSS
T ss_pred             CCCcccc--ceecCcccccceECCCCCEEEEEECC----eEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCc
Confidence            8876411  01123568899999999999998754    3444444444432211 2333222                 


Q ss_pred             EEEEEeeCCCeEEEEecCCC----------------------------------eEEEEeCCCCcee--------eeccC
Q 007283          149 LSCAFKPSRPFRIATCGEDF----------------------------------LVNFYEGPPFKFK--------LSHRG  186 (609)
Q Consensus       149 ~~~~~~p~~~~~i~t~~~d~----------------------------------~i~~~~~~~~~~~--------~~~~~  186 (609)
                      .+++|+|||.. |+.++.|.                                  .+.+||...++..        ..+.+
T Consensus       172 ~~~~wSPDG~~-la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  250 (719)
T 1z68_A          172 YALWWSPNGKF-LAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS  250 (719)
T ss_dssp             CCEEECTTSSE-EEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT
T ss_pred             ccEEECCCCCE-EEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC
Confidence            48999999986 66655431                                  6788998776542        12346


Q ss_pred             cccceEEEEEcCCCCEEEEEeCC----CcEEEEe----CCCCccccccC-cCCCCccceE-----EEEECCCCCeEEE--
Q 007283          187 HSNFVNCVRFSPDGSKFISVSSD----KKGIIYD----GKTADKIGELS-PEDGHKGSVY-----AVSWSPDGKQVLT--  250 (609)
Q Consensus       187 h~~~v~~l~~s~dg~~l~s~~~d----~~i~iwd----~~~~~~~~~~~-~~~~h~~~V~-----~l~~spd~~~l~s--  250 (609)
                      |...+..++|+||++.+++....    ..+.+||    ..+++....+. ...+|.+.+.     .+.|+|||+.|+.  
T Consensus       251 ~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  330 (719)
T 1z68_A          251 SDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIF  330 (719)
T ss_dssp             SCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEE
T ss_pred             CcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEE
Confidence            88899999999998766664432    2488889    77776544331 0024666666     8899999996654  


Q ss_pred             EeCCC--cEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcC-----CcEEEEeCCCCCC--Cceee-
Q 007283          251 ASADK--SAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG-----GTISIFSANDLEK--SPLQL-  320 (609)
Q Consensus       251 ~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~i~~~~~~~~~~--~~~~~-  320 (609)
                      ...++  +|.+||+..   ++ ...+... ...+..  . ..++++.++..+.+     +..++|.++....  ....+ 
T Consensus       331 ~~~~g~~~l~~~~~~~---~~-~~~lt~~-~~~v~~--~-~~~d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~l~  402 (719)
T 1z68_A          331 SDKDGYKHIHYIKDTV---EN-AIQITSG-KWEAIN--I-FRVTQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKCVT  402 (719)
T ss_dssp             ECTTSCEEEEEESSCS---TT-CEECSCS-SSCEEE--E-EEECSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEESS
T ss_pred             EccCCceEEEEEECCC---Cc-eEecccC-ceEEEE--E-EEEeCCEEEEEEecCCCCCceEEEEEEeCCCCCCCceecc
Confidence            44555  456666643   22 2233221 111111  1 22355666666654     7788987653211  11222 


Q ss_pred             ---eCCCCCeEEEEEecCCCCEEEEEecC--CcEEEEecCcc
Q 007283          321 ---SGHMKNVTALTVLNIDPKVILSSSYD--GLIVKWIQGIG  357 (609)
Q Consensus       321 ---~~h~~~v~~~~~~~~~~~~~~t~s~d--g~i~~W~~~~~  357 (609)
                         .+|...+..+.+++....++++++.+  ..+.+|+..++
T Consensus       403 ~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g  444 (719)
T 1z68_A          403 CHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTD  444 (719)
T ss_dssp             TTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSC
T ss_pred             CccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCC
Confidence               23666677777775445566666655  45777866543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.84  E-value=3.5e-17  Score=163.25  Aligned_cols=317  Identities=13%  Similarity=0.077  Sum_probs=186.4

Q ss_pred             cCCCeEEEEeC--CCCceeeeccCcccceEEEEEcCCCCEEEEEeCC----CcEEEEeCCC--CccccccCcCCCCccce
Q 007283          165 GEDFLVNFYEG--PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD----KKGIIYDGKT--ADKIGELSPEDGHKGSV  236 (609)
Q Consensus       165 ~~d~~i~~~~~--~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d----~~i~iwd~~~--~~~~~~~~~~~~h~~~V  236 (609)
                      +.++.|.+|..  .+++.......+......++|+|||++|++++.+    +.+.+|++..  ++ +..+.....+....
T Consensus        24 ~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~-~~~~~~~~~~~~~p  102 (361)
T 3scy_A           24 GNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGT-LHLLNTQKTMGADP  102 (361)
T ss_dssp             SSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTE-EEEEEEEECSSSCE
T ss_pred             CCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCc-EEEeeEeccCCCCc
Confidence            34566777753  4454433221266677889999999999998876    7999997654  33 22221111234456


Q ss_pred             EEEEECCCCCeEEEEe-CCCcEEEeecccCCCC-ceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCC
Q 007283          237 YAVSWSPDGKQVLTAS-ADKSAKVWDISEDNHG-KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLE  314 (609)
Q Consensus       237 ~~l~~spd~~~l~s~s-~d~~i~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~  314 (609)
                      ..+++  ++++|++++ .++.+.+|++...... .........+.                                 ..
T Consensus       103 ~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~---------------------------------~~  147 (361)
T 3scy_A          103 CYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGS---------------------------------GP  147 (361)
T ss_dssp             EEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCC---------------------------------CS
T ss_pred             EEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCC---------------------------------CC
Confidence            77887  888777776 5789999998632110 00000000000                                 00


Q ss_pred             CCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEec
Q 007283          315 KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSL  394 (609)
Q Consensus       315 ~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  394 (609)
                         .....+...+.++++++....++++...++.|.+|+.+.......    ...+..         .+    ..     
T Consensus       148 ---~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~----~~~l~~---------~~----~~-----  202 (361)
T 3scy_A          148 ---DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADN----KEKFLT---------KG----TP-----  202 (361)
T ss_dssp             ---CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTT----CCCCEE---------EE----EE-----
T ss_pred             ---CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCccc----ccceee---------cc----cc-----
Confidence               000112334566777654333556666688999996543210000    000000         00    00     


Q ss_pred             cCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEe-CCCcEEE
Q 007283          395 QGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGS-QDGKLRV  473 (609)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs-~dg~i~i  473 (609)
                                                                   .............++|+|||+++++++ .++.|++
T Consensus       203 ---------------------------------------------~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v  237 (361)
T 3scy_A          203 ---------------------------------------------EAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIA  237 (361)
T ss_dssp             ---------------------------------------------EEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEE
T ss_pred             ---------------------------------------------cceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEE
Confidence                                                         000000112356789999999887777 6899999


Q ss_pred             EEecCCeeeeeEEEe---cCCCceEEEEECCCCCEEEEEeC--CCeEEEEEcc--CCceE-EeeecCCCCceEEEEECCC
Q 007283          474 YSIRGDTLTEEAVLE---KHRGAVSVIRYSPDVSMFASGDV--NREAIVWDRV--SREVK-LKNMLYHTARINCLAWSPN  545 (609)
Q Consensus       474 w~~~~~~~~~~~~~~---~h~~~i~~v~~s~~~~~l~s~s~--d~~v~iwd~~--~~~~~-~~~~~~h~~~i~~l~~s~d  545 (609)
                      |++.++.+.....+.   .+...+..++|+|||++++++..  ++++.+|++.  ++... +..+.. ...+.+++|+||
T Consensus       238 ~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spd  316 (361)
T 3scy_A          238 FRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPN  316 (361)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTT
T ss_pred             EEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCC
Confidence            999877654333332   33345789999999998876665  4899999985  33322 222222 456889999999


Q ss_pred             CcEEEEEe-CCCeEEEEEcCCCCCcceeE-eccccCCeEEEEEcC
Q 007283          546 NSMVATGS-LDTCVIIYEIDKPASSRMTI-KGAHLGGVYGLAFTD  588 (609)
Q Consensus       546 ~~~l~s~s-~D~~v~vw~~~~~~~~~~~~-~~~h~~~v~~~~~s~  588 (609)
                      |++|++++ .++.|.+|+++.....+..+ ...+...+.|+.|.|
T Consensus       317 g~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~~  361 (361)
T 3scy_A          317 GKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFVD  361 (361)
T ss_dssp             SCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEEC
T ss_pred             CCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEcC
Confidence            99888887 67999998876432222222 134667889999863

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=1.9e-17  Score=164.20  Aligned_cols=283  Identities=12%  Similarity=0.080  Sum_probs=175.9

Q ss_pred             CCeEEEEe--CCCCceee-eccCcccceEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283          167 DFLVNFYE--GPPFKFKL-SHRGHSNFVNCVRFSPDGSKFISVSS---DKKGIIYDGKTADKIGELSPEDGHKGSVYAVS  240 (609)
Q Consensus       167 d~~i~~~~--~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~---d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~  240 (609)
                      +..+.+|.  ..+++... ....+......++|+|||+ |++++.   ++.+.+|+..+++.. .+.....+...+..++
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~-~~~~~~~~~~~p~~~a   92 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH-KLNTVVAPGTPPAYVA   92 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE-EEEEEEEESCCCSEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE-EeeeeecCCCCCEEEE
Confidence            44566654  44455433 2334556678899999999 555544   689999998665421 1111123556788999


Q ss_pred             ECCCCCeEEEEe-CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCcee
Q 007283          241 WSPDGKQVLTAS-ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQ  319 (609)
Q Consensus       241 ~spd~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  319 (609)
                      |+|||++|++++ .++.+++|++...........+...+                                   ..+ . 
T Consensus        93 ~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-----------------------------------~~p-~-  135 (347)
T 3hfq_A           93 VDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSG-----------------------------------HGP-R-  135 (347)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCC-----------------------------------CCS-S-
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCC-----------------------------------CCC-C-
Confidence            999999888887 67999999985321111111111000                                   000 0 


Q ss_pred             eeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCcc
Q 007283          320 LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQC  399 (609)
Q Consensus       320 ~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~  399 (609)
                      ...+...+.++++++.. +++++...++.|.+|+.....          .+...                ...       
T Consensus       136 ~~~~~~~~~~~~~spdg-~l~v~~~~~~~v~~~~~~~~g----------~~~~~----------------~~~-------  181 (347)
T 3hfq_A          136 PEQDGSHIHYTDLTPDN-RLAVIDLGSDKVYVYNVSDAG----------QLSEQ----------------SVL-------  181 (347)
T ss_dssp             TTCSSCCEEEEEECTTS-CEEEEETTTTEEEEEEECTTS----------CEEEE----------------EEE-------
T ss_pred             ccccCCCceEEEECCCC-cEEEEeCCCCEEEEEEECCCC----------cEEEe----------------eeE-------
Confidence            01133456677776544 477777788899999764110          00000                000       


Q ss_pred             ccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEE-EeCCCcEEEEEecC
Q 007283          400 GYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII-GSQDGKLRVYSIRG  478 (609)
Q Consensus       400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~-gs~dg~i~iw~~~~  478 (609)
                                                                 ..........++++|||+++++ +..++.|++|++..
T Consensus       182 -------------------------------------------~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  218 (347)
T 3hfq_A          182 -------------------------------------------TMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDT  218 (347)
T ss_dssp             -------------------------------------------ECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred             -------------------------------------------EcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence                                                       0000112456889999996655 56788999999874


Q ss_pred             --CeeeeeEEEecCC------CceEEEEECCCCCEE-EEEeCCCeEEEEEccCC-c-eEEeeecCCCCceEEEEECCCCc
Q 007283          479 --DTLTEEAVLEKHR------GAVSVIRYSPDVSMF-ASGDVNREAIVWDRVSR-E-VKLKNMLYHTARINCLAWSPNNS  547 (609)
Q Consensus       479 --~~~~~~~~~~~h~------~~i~~v~~s~~~~~l-~s~s~d~~v~iwd~~~~-~-~~~~~~~~h~~~i~~l~~s~d~~  547 (609)
                        +.+..........      ..+..++|+|||+++ ++...++++.+|++... . ..+..+..+...+.+++|+|||+
T Consensus       219 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~  298 (347)
T 3hfq_A          219 QTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEA  298 (347)
T ss_dssp             TTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSS
T ss_pred             CCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCC
Confidence              4443333333332      358899999999977 56667899999998632 2 22333444566789999999999


Q ss_pred             EEEEEeCC-CeEEEEEcCC
Q 007283          548 MVATGSLD-TCVIIYEIDK  565 (609)
Q Consensus       548 ~l~s~s~D-~~v~vw~~~~  565 (609)
                      +|++++.+ +.|.+|+++.
T Consensus       299 ~l~v~~~~~~~v~v~~~d~  317 (347)
T 3hfq_A          299 FVVVVNQNTDNATLYARDL  317 (347)
T ss_dssp             EEEEEETTTTEEEEEEECT
T ss_pred             EEEEEEcCCCcEEEEEEeC
Confidence            88888765 8999997764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.82  E-value=9e-18  Score=166.80  Aligned_cols=248  Identities=13%  Similarity=0.092  Sum_probs=182.2

Q ss_pred             cCceeEEeecCCCCeEEEeC--------CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcC
Q 007283           16 RGRGILISGHPKSNSILYTN--------GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGA   86 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~--------~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~   86 (609)
                      .+.+..+.++|+|+.++...        ++.+.+||+.+++....+.. ...+..++|+|+|++++ +...++.|.+||.
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~  118 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAIDA  118 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence            34567899999999887665        45899999998887665543 34578899999999665 5566899999999


Q ss_pred             CCCceeeEEEeeccc---------ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCC
Q 007283           87 HNDHVLKKEFRVLSG---------RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSR  157 (609)
Q Consensus        87 ~~~~~~~~~~~~~~~---------~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~  157 (609)
                      .+++... .+..+..         .+..++|+|||+++++.+.+. ...+.+++.++++....+..+...+..++|+|++
T Consensus       119 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg  196 (353)
T 3vgz_A          119 KTGEVKG-RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK-ESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEG  196 (353)
T ss_dssp             TTCCEEE-EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-SCEEEEEETTTTEEEEEECCCCTTCCCCEEETTT
T ss_pred             CCCeeEE-EEecCCCccccccCCCCCceEEECCCCCEEEEEecCC-CceEEEEcCCCCceEEEecCCCCccceEEECCCC
Confidence            8876533 3433321         268899999999888776322 2235566666666677776566668889999999


Q ss_pred             CeEEEEecCCCeEEEEeCCCCceeeecc----CcccceEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCccccccCcCCCC
Q 007283          158 PFRIATCGEDFLVNFYEGPPFKFKLSHR----GHSNFVNCVRFSPDGSKFISVSS-DKKGIIYDGKTADKIGELSPEDGH  232 (609)
Q Consensus       158 ~~~i~t~~~d~~i~~~~~~~~~~~~~~~----~h~~~v~~l~~s~dg~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~~~h  232 (609)
                      .. +++++.++.+.+||..+++....+.    ++...+..++|+|+|+.+++++. ++.+.+||..+++.+..+..  +.
T Consensus       197 ~~-l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~~  273 (353)
T 3vgz_A          197 KR-LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--PE  273 (353)
T ss_dssp             TE-EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--SS
T ss_pred             CE-EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--CC
Confidence            86 6666778999999998887665543    35667889999999997766655 58999999998887766542  11


Q ss_pred             ccceEEEEECCCCCeEEEEe-CCCcEEEeecccCCCCceEEEec
Q 007283          233 KGSVYAVSWSPDGKQVLTAS-ADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       233 ~~~V~~l~~spd~~~l~s~s-~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                         -..++|+|++++++.+. .++.|.+||+..   ++....+.
T Consensus       274 ---~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~---~~~~~~~~  311 (353)
T 3vgz_A          274 ---SLAVLFNPARNEAYVTHRQAGKVSVIDAKS---YKVVKTFD  311 (353)
T ss_dssp             ---CCCEEEETTTTEEEEEETTTTEEEEEETTT---TEEEEEEE
T ss_pred             ---CceEEECCCCCEEEEEECCCCeEEEEECCC---CeEEEEEe
Confidence               25699999999655554 689999999863   45554443

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.82  E-value=3.6e-18  Score=169.42  Aligned_cols=244  Identities=11%  Similarity=0.098  Sum_probs=163.6

Q ss_pred             cCceeEEeecCCCCeEEEeC----CCEEEEEeCCCCc--cccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCC
Q 007283           16 RGRGILISGHPKSNSILYTN----GRSVIILDLSNPL--QVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHN   88 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~--~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~   88 (609)
                      .+.|..++++|||+ |+...    .+.+.+|++.++.  .+..+..|...+..++|+|||++|++++ .+++|++|++..
T Consensus        39 ~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            35667899999998 54432    2689999997655  3333345677889999999999998877 789999999963


Q ss_pred             Cceee--EEEeec---------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcC-CCCee--EEEecC-CccEEEEEE
Q 007283           89 DHVLK--KEFRVL---------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD-SGTNV--GEFDGH-SRRVLSCAF  153 (609)
Q Consensus        89 ~~~~~--~~~~~~---------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~h-~~~v~~~~~  153 (609)
                      ...+.  ..+...         ...+..++|+|||+ ++++..+.+  .+++|+.+ .+...  ..+..+ ...+..++|
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~--~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSD--KVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTT--EEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCC--EEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            22111  112111         12377899999999 665553332  45667766 33321  222222 235778999


Q ss_pred             eeCCCeEEEEecCCCeEEEEeCCC--Ccee--eeccCcc------cceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcc
Q 007283          154 KPSRPFRIATCGEDFLVNFYEGPP--FKFK--LSHRGHS------NFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       154 ~p~~~~~i~t~~~d~~i~~~~~~~--~~~~--~~~~~h~------~~v~~l~~s~dg~~l-~s~~~d~~i~iwd~~~~~~  222 (609)
                      +|++..+++++..++.+.+|+...  ++..  .......      ..+..++|+|||++| ++...++.+.+|+......
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            999997777788889999998653  4322  1221111      458889999999977 5556789999999863221


Q ss_pred             ccccCcCCCCccceEEEEECCCCCeEEEEeCC-CcEEEeecc
Q 007283          223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-KSAKVWDIS  263 (609)
Q Consensus       223 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-~~i~iwd~~  263 (609)
                      +..+.....+...+..++|+|||++|++++.+ +.+.+|+++
T Consensus       275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence            11111112345568899999999988888764 899999664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.82  E-value=4.2e-18  Score=167.94  Aligned_cols=269  Identities=12%  Similarity=0.046  Sum_probs=174.6

Q ss_pred             EEEEecCCCeEEEEeCCCCceeeecc-Cccc-ceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccCcCC--CCcc
Q 007283          160 RIATCGEDFLVNFYEGPPFKFKLSHR-GHSN-FVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGELSPED--GHKG  234 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~~~~~~~~~-~h~~-~v~~l~~s~dg~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~--~h~~  234 (609)
                      .+++++.++.+.+||..+++....+. ++.. .+..++|+|+|+.+ +++..++.+.+||..+++.+..+....  .|..
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~   82 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccc
Confidence            48888999999999998887766554 3322 37889999999865 455567899999999888765543210  0223


Q ss_pred             ceEEEEECCCCCeEEEEe------------CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcC
Q 007283          235 SVYAVSWSPDGKQVLTAS------------ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG  302 (609)
Q Consensus       235 ~V~~l~~spd~~~l~s~s------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (609)
                      .+.+++|+|+|++|++++            .++.|++||+..   ++....+..                          
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~--------------------------  133 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAET---LSRRKAFEA--------------------------  133 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTT---TEEEEEEEC--------------------------
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCC---CcEEEEEeC--------------------------
Confidence            577899999999988886            578999999852   222222110                          


Q ss_pred             CcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEE
Q 007283          303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVT  382 (609)
Q Consensus       303 g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (609)
                                           ...+..+++++ +++.++.+  ++.|.+|+...+.....                    
T Consensus       134 ---------------------~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~--------------------  169 (337)
T 1pby_B          134 ---------------------PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVED--------------------  169 (337)
T ss_dssp             ---------------------CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEE--------------------
T ss_pred             ---------------------CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeee--------------------
Confidence                                 01123344443 33444444  67888887654311000                    


Q ss_pred             EeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEE
Q 007283          383 SGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEA  462 (609)
Q Consensus       383 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l  462 (609)
                               +....             .....                                       +++|||+.+
T Consensus       170 ---------~~~~~-------------~~~~~---------------------------------------~~s~dg~~l  188 (337)
T 1pby_B          170 ---------KPIQS-------------WEAET---------------------------------------YAQPDVLAV  188 (337)
T ss_dssp             ---------ECSTT-------------TTTTT---------------------------------------BCCCBCCCC
T ss_pred             ---------eeccc-------------cCCCc---------------------------------------eeCCCccEE
Confidence                     00000             00000                                       112222211


Q ss_pred             EEE--------------eCC----------CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEE
Q 007283          463 IIG--------------SQD----------GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVW  518 (609)
Q Consensus       463 ~~g--------------s~d----------g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iw  518 (609)
                      +..              ..+          ..|.+||+.++... ...+..+...+.+++|+|||++++++  ++.+++|
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~  265 (337)
T 1pby_B          189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESF  265 (337)
T ss_dssp             CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEE
T ss_pred             eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEE
Confidence            111              111          15889998877654 44456677788999999999999988  7999999


Q ss_pred             EccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCC
Q 007283          519 DRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPA  567 (609)
Q Consensus       519 d~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~  567 (609)
                      |+.+.+... .+. ....+.+++|+||+++|++++.|+.|.+||+....
T Consensus       266 d~~~~~~~~-~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~  312 (337)
T 1pby_B          266 DLEKNASIK-RVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLE  312 (337)
T ss_dssp             ETTTTEEEE-EEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCC
T ss_pred             ECCCCcCcc-eec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCc
Confidence            987765432 222 34568899999999999999999999999987643

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.82  E-value=1.8e-18  Score=184.38  Aligned_cols=273  Identities=12%  Similarity=0.037  Sum_probs=181.4

Q ss_pred             CCCcEEEEECCCCCEEEEEeC-CCcEEEEcCCCCceeeEEEeecc-cceeEEEECCCCCEEEEEECCCCcceEEEEEcCC
Q 007283           57 AYPATVARFSPNGEWIASADV-SGTVRIWGAHNDHVLKKEFRVLS-GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS  134 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~-d~~i~vWd~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  134 (609)
                      ..+|.+++|+|||++||+++. ||+++||++.+++.  ..+..+. ..+..++|||| +.+++.....+....++|.++.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~--~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~   97 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGET--VKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNT   97 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEE--EECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEET
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCc--EeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEec
Confidence            567999999999999998876 99999999865542  3344554 57999999999 5444444212233456666654


Q ss_pred             --CCeeEEEecCCccEEEEEEeeCCCeE-EEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC--
Q 007283          135 --GTNVGEFDGHSRRVLSCAFKPSRPFR-IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD--  209 (609)
Q Consensus       135 --~~~~~~~~~h~~~v~~~~~~p~~~~~-i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d--  209 (609)
                        ......+.... .+...+|+|++..+ +++++.+.. .+|+..+++.......+.   .+++|+|||++|++++.+  
T Consensus        98 ~~~g~~~~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           98 SRPGEEQRLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             TSTTCCEECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEET
T ss_pred             cCCCccccccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCC
Confidence              32222333222 23466888988654 455555554 499987776554443332   788999999999988877  


Q ss_pred             --CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC--cEEEeecccCCCCceEEEeccCCCCCccce
Q 007283          210 --KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK--SAKVWDISEDNHGKLKKTLTPSGSGGVDDM  285 (609)
Q Consensus       210 --~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  285 (609)
                        ..+++||..+++.. .+   .+|.+.+..++|||||++|+++..++  +|++||+..   ++.. .+. .....+...
T Consensus       173 ~~~~i~~~d~~~g~~~-~l---~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~---~~~~-~~~-~~~~~~~~~  243 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLR-VF---DSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRD---GSVE-DLE-LPSKDFSSY  243 (582)
T ss_dssp             TEEEEEEEETTTCCCE-EE---CCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTT---CCEE-ECC-CSCSHHHHH
T ss_pred             CCeEEEEEcCCCCCce-Ee---ecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCC---CcEE-Ecc-CCCcChhhh
Confidence              78999998887754 33   36778899999999999999888888  899999863   3333 222 221111111


Q ss_pred             E----EEEEEc--CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCc---EEEEec
Q 007283          286 L----VGCLWQ--NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGL---IVKWIQ  354 (609)
Q Consensus       286 ~----~~~~~~--~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~---i~~W~~  354 (609)
                      .    ....|+  +.++++++.++++++|.+  . .   ........+..++++  +++++++++.+.+   +.+|+.
T Consensus       244 ~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g-~---~~~~~~~~v~~~~~s--dg~~l~~~s~~~~p~~l~~~d~  313 (582)
T 3o4h_A          244 RPTAITWLGYLPDGRLAVVARREGRSAVFID--G-E---RVEAPQGNHGRVVLW--RGKLVTSHTSLSTPPRIVSLPS  313 (582)
T ss_dssp             CCSEEEEEEECTTSCEEEEEEETTEEEEEET--T-E---EECCCSSEEEEEEEE--TTEEEEEEEETTEEEEEEEETT
T ss_pred             hhccccceeEcCCCcEEEEEEcCCcEEEEEE--C-C---eeccCCCceEEEEec--CCEEEEEEcCCCCCCeEEEEcC
Confidence            1    111243  447778888999999997  1 1   111344567788887  5577888877754   444543

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=4.9e-18  Score=172.97  Aligned_cols=211  Identities=13%  Similarity=0.114  Sum_probs=151.2

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCcc----------c-----cccccCCCCcEEEEECCCCCEEE----EEeCC
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQ----------V-----SIYGEHAYPATVARFSPNGEWIA----SADVS   78 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~----------~-----~~~~~h~~~v~~~~~sp~g~~la----s~~~d   78 (609)
                      ....++.++++..++......+.||+..+...          .     .....|.+.|++++|+|+|++||    +++.|
T Consensus        38 ~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d  117 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYG  117 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTE
T ss_pred             CccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCC
Confidence            34578888888888877666688877532100          0     00123566799999999999999    89999


Q ss_pred             CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCC
Q 007283           79 GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP  158 (609)
Q Consensus        79 ~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (609)
                      ++|+|||+.+...      ......         +.           +         .....+.+|...|.+++|+|++.
T Consensus       118 ~~v~iwd~~~~~~------~~~~~~---------~~-----------~---------~~~~~~~~h~~~V~~v~~~p~~~  162 (434)
T 2oit_A          118 SIIAFFDVRTFSN------EAKQQK---------RP-----------F---------AYHKLLKDAGGMVIDMKWNPTVP  162 (434)
T ss_dssp             EEEEEEEHHHHHC------TTCSSC---------CC-----------S---------EEEECCCSGGGSEEEEEECSSCT
T ss_pred             ceEEEEEcccccc------CCcCCc---------ce-----------e---------eeeeccCCCCCceEEEEECCCCC
Confidence            9999999865310      000000         00           0         00123457888999999999855


Q ss_pred             eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC----CCCcc
Q 007283          159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE----DGHKG  234 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~----~~h~~  234 (609)
                      ..+++++.|+.+++||...........+|...|++++|+|+|++|++|+.|+.|++||.+ ++....+...    ..|..
T Consensus       163 ~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~  241 (434)
T 2oit_A          163 SMVAVCLADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPV  241 (434)
T ss_dssp             TEEEEEETTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCE
T ss_pred             CEEEEEECCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCce
Confidence            579999999999999998876666677899999999999999999999999999999987 3333222111    13455


Q ss_pred             ceEEEEECCCCCeEEEE-eCCC------cEEEeeccc
Q 007283          235 SVYAVSWSPDGKQVLTA-SADK------SAKVWDISE  264 (609)
Q Consensus       235 ~V~~l~~spd~~~l~s~-s~d~------~i~iwd~~~  264 (609)
                      .|.+++|++++.++++. +.||      .+++|++..
T Consensus       242 ~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~  278 (434)
T 2oit_A          242 RVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPK  278 (434)
T ss_dssp             EEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCC
T ss_pred             eEEEEEEecCceEEEEEccCCCccCCCCceEEEEecc
Confidence            89999999998877554 3443      389999864

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.81  E-value=8e-18  Score=184.17  Aligned_cols=195  Identities=12%  Similarity=0.122  Sum_probs=131.0

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeeccc---ceeEEEECCCCCEEEEEECCCC------cceEEEEEc
Q 007283           62 VARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSG---RIDDLQWSPDGLRIVACGDGKG------KSLVRAFMW  132 (609)
Q Consensus        62 ~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~~~~------~~~~~~~~~  132 (609)
                      .++|+|||++++++ .|++|++||+.+++.. ..+..+..   .+..++|||||++|+.+++...      ...+++|+.
T Consensus        20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~   97 (719)
T 1z68_A           20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSY-TILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL   97 (719)
T ss_dssp             CCEESSSSEEEEEC-TTSCEEEEESSSCCEE-EEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred             ccEECCCCeEEEEc-CCCCEEEEEcCCCcEE-EEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence            67899999877765 5999999999887642 22333322   3899999999999998765211      123445554


Q ss_pred             CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec-cCcccce-----------------EEE
Q 007283          133 DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH-RGHSNFV-----------------NCV  194 (609)
Q Consensus       133 ~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~-~~h~~~v-----------------~~l  194 (609)
                      ++++.+.. ..-...+..++|+|+|.. ||.+. ++.|++|+...++..... .++...|                 .++
T Consensus        98 ~~g~~~~~-~~l~~~~~~~~~SPDG~~-la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~  174 (719)
T 1z68_A           98 SNGEFVRG-NELPRPIQYLCWSPVGSK-LAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYAL  174 (719)
T ss_dssp             TTTEECCS-SCCCSSBCCEEECSSTTC-EEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCE
T ss_pred             CCCccccc-eecCcccccceECCCCCE-EEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccE
Confidence            44443100 111246788999999986 65554 678999998776554322 3333322                 489


Q ss_pred             EEcCCCCEEEEEeCCC----------------------------------cEEEEeCCCCccc--cccC---cCCCCccc
Q 007283          195 RFSPDGSKFISVSSDK----------------------------------KGIIYDGKTADKI--GELS---PEDGHKGS  235 (609)
Q Consensus       195 ~~s~dg~~l~s~~~d~----------------------------------~i~iwd~~~~~~~--~~~~---~~~~h~~~  235 (609)
                      +|||||+.|++++.|.                                  .+.+||..+++..  ..+.   ...+|...
T Consensus       175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~  254 (719)
T 1z68_A          175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY  254 (719)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred             EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence            9999999999988652                                  7789998887643  1111   01257888


Q ss_pred             eEEEEECCCCCeEEEEeCC----CcEEEee
Q 007283          236 VYAVSWSPDGKQVLTASAD----KSAKVWD  261 (609)
Q Consensus       236 V~~l~~spd~~~l~s~s~d----~~i~iwd  261 (609)
                      +.+++|+||++++++....    ..|++||
T Consensus       255 ~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d  284 (719)
T 1z68_A          255 FSWLTWVTDERVCLQWLKRVQNVSVLSICD  284 (719)
T ss_dssp             EEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred             EEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence            9999999998877774432    2377777

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.80  E-value=5.4e-18  Score=167.16  Aligned_cols=238  Identities=16%  Similarity=0.111  Sum_probs=173.4

Q ss_pred             ceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccc-cC----CCCcEEEEECCCCCEEEEEe------------CC
Q 007283           18 RGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYG-EH----AYPATVARFSPNGEWIASAD------------VS   78 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~-~h----~~~v~~~~~sp~g~~las~~------------~d   78 (609)
                      .+..+.++|+|+.++...  ++.+.+||+.+++....+. ++    ...+..++|+|+|++|++++            .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            466889999998775543  4799999998887665443 22    22677899999999998876            57


Q ss_pred             CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCC--ccEEEEEEeeC
Q 007283           79 GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHS--RRVLSCAFKPS  156 (609)
Q Consensus        79 ~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~  156 (609)
                      +.|.+||..+++.. ..+.. ...+..++|+|||++|+++ ++    .+.+|+.+.++....+..+.  .+   +.|+|+
T Consensus       115 ~~i~v~d~~~~~~~-~~~~~-~~~~~~~~~s~dg~~l~~~-~~----~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~d  184 (337)
T 1pby_B          115 TRVALYDAETLSRR-KAFEA-PRQITMLAWARDGSKLYGL-GR----DLHVMDPEAGTLVEDKPIQSWEAE---TYAQPD  184 (337)
T ss_dssp             CEEEEEETTTTEEE-EEEEC-CSSCCCEEECTTSSCEEEE-SS----SEEEEETTTTEEEEEECSTTTTTT---TBCCCB
T ss_pred             ceEEEEECCCCcEE-EEEeC-CCCcceeEECCCCCEEEEe-CC----eEEEEECCCCcEeeeeeccccCCC---ceeCCC
Confidence            99999999876643 23332 4567889999999988876 22    35667766666666665443  32   277898


Q ss_pred             CCeEEEEecCCC-----------------------eEEEEeCCCCcee-eeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          157 RPFRIATCGEDF-----------------------LVNFYEGPPFKFK-LSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       157 ~~~~i~t~~~d~-----------------------~i~~~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      +..+++++..++                       .+.+||..+++.. ..+..+...+.+++|+|||++++++  ++.+
T Consensus       185 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v  262 (337)
T 1pby_B          185 VLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVL  262 (337)
T ss_dssp             CCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEE
T ss_pred             ccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCeE
Confidence            876555444444                       3578888776653 2344566678899999999988887  7999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEe
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  274 (609)
                      .+||..+++.+..+.    ....+.+++|+|||++|++++.++.|++||+..   ++....+
T Consensus       263 ~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~---~~~~~~~  317 (337)
T 1pby_B          263 ESFDLEKNASIKRVP----LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAET---LEKKGQV  317 (337)
T ss_dssp             EEEETTTTEEEEEEE----CSSCCCEEEECTTSCEEEEESBSSEEEEEETTT---CCEEEEE
T ss_pred             EEEECCCCcCcceec----CCCceeeEEECCCCCEEEEEcCCCcEEEEECcC---CcEEEEE
Confidence            999999887766553    224578999999999999999999999999863   4444444

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=8e-17  Score=159.61  Aligned_cols=152  Identities=11%  Similarity=0.089  Sum_probs=98.8

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecc-cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEE
Q 007283           62 VARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLS-GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGE  140 (609)
Q Consensus        62 ~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  140 (609)
                      .++++++++++++++.+++|++||..+++.+. .+.... ..+..++|+|||+++++++                     
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~-~~~~~~~~~~~~~~~s~dg~~~~v~~---------------------   61 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYK-SCVMPDKFGPGTAMMAPDNRTAYVLN---------------------   61 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEE-EEECSSCCSSCEEEECTTSSEEEEEE---------------------
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEE-EEecCCCCCCceeEECCCCCEEEEEe---------------------
Confidence            45688999999999999999999998876432 232221 1355666666665544433                     


Q ss_pred             EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc-Cc-----ccceEEEEEcCCCCEEEEEeCC-----
Q 007283          141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR-GH-----SNFVNCVRFSPDGSKFISVSSD-----  209 (609)
Q Consensus       141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~-~h-----~~~v~~l~~s~dg~~l~s~~~d-----  209 (609)
                                              ..++.+.+||..+++....+. ++     ...+.+++|+|||++|++++.+     
T Consensus        62 ------------------------~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  117 (349)
T 1jmx_B           62 ------------------------NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLN  117 (349)
T ss_dssp             ------------------------TTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECS
T ss_pred             ------------------------CCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccc
Confidence                                    333444445444443332221 11     2336788999999999988865     


Q ss_pred             -------CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          210 -------KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       210 -------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                             +.+.+||..+++....+... .+...+.+++|+|||+ ++.++.  .|++||+.
T Consensus       118 ~~~~~~~~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~  174 (349)
T 1jmx_B          118 DHYVVKPPRLEVFSTADGLEAKPVRTF-PMPRQVYLMRAADDGS-LYVAGP--DIYKMDVK  174 (349)
T ss_dssp             SCEEECCCEEEEEEGGGGGGBCCSEEE-ECCSSCCCEEECTTSC-EEEESS--SEEEECTT
T ss_pred             cccccCCCeEEEEECCCccccceeeec-cCCCcccceeECCCCc-EEEccC--cEEEEeCC
Confidence                   89999998875543322111 2334688999999999 555543  49999975

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.78  E-value=4.7e-16  Score=154.99  Aligned_cols=287  Identities=11%  Similarity=0.144  Sum_probs=177.5

Q ss_pred             CCEEEEEeC--CCCccccccccCCCCcEEEEECCCCCEEEEEeCC----CcEEEEcCCCC-ceee--EEEeecccceeEE
Q 007283           36 GRSVIILDL--SNPLQVSIYGEHAYPATVARFSPNGEWIASADVS----GTVRIWGAHND-HVLK--KEFRVLSGRIDDL  106 (609)
Q Consensus        36 ~~~~~i~~~--~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d----~~i~vWd~~~~-~~~~--~~~~~~~~~v~~~  106 (609)
                      ++.+.+|.+  .+++.......|......++|+|||++|++++.+    +.|++|++... ..+.  .....+......+
T Consensus        26 ~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~  105 (361)
T 3scy_A           26 SKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYL  105 (361)
T ss_dssp             CCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEE
T ss_pred             CCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEE
Confidence            357778766  3444322222266778889999999999988875    79999998763 2222  2222234456777


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCCCCeeE---EE---ec--------CCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG---EF---DG--------HSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~--------h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      ++  ||++|+++....  ..+.+|+.+....+.   ..   .+        +...+.+++|+|++..+++++..++.+.+
T Consensus       106 ~~--dg~~l~~~~~~~--~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v  181 (361)
T 3scy_A          106 TT--NGKNIVTANYSG--GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHK  181 (361)
T ss_dssp             EE--CSSEEEEEETTT--TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             EE--CCCEEEEEECCC--CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEE
Confidence            77  888888876433  245666665432221   11   11        12346789999999977777777889999


Q ss_pred             EeCCCCc-------e------eeeccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcc--ccccCcCCCCccce
Q 007283          173 YEGPPFK-------F------KLSHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADK--IGELSPEDGHKGSV  236 (609)
Q Consensus       173 ~~~~~~~-------~------~~~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~--~~~~~~~~~h~~~V  236 (609)
                      |+.....       .      ......+.....+++|+|||+++++++ .++.+.+|+..+++.  +..+.....+....
T Consensus       182 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~  261 (361)
T 3scy_A          182 FNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGS  261 (361)
T ss_dssp             EEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCE
T ss_pred             EEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCc
Confidence            9765332       1      111223445578999999999887777 689999999876543  22222222344557


Q ss_pred             EEEEECCCCCeEEEEeC--CCcEEEeecccCCCCc--eEEEeccCCCCCccceEEEEEEc--CCeEEEEE-cCCcEEEEe
Q 007283          237 YAVSWSPDGKQVLTASA--DKSAKVWDISEDNHGK--LKKTLTPSGSGGVDDMLVGCLWQ--NDFLVIVS-LGGTISIFS  309 (609)
Q Consensus       237 ~~l~~spd~~~l~s~s~--d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~g~i~~~~  309 (609)
                      ..++|+|||++|+++..  ++.|.+|++... .++  ....+.. + ...    ..+.++  +.++++++ .++.+.+|.
T Consensus       262 ~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~-~g~~~~~~~~~~-g-~~~----~~~~~spdg~~l~~~~~~~~~v~v~~  334 (361)
T 3scy_A          262 GDIHLSPDGKYLYASNRLKADGVAIFKVDET-NGTLTKVGYQLT-G-IHP----RNFIITPNGKYLLVACRDTNVIQIFE  334 (361)
T ss_dssp             EEEEECTTSSEEEEEECSSSCEEEEEEECTT-TCCEEEEEEEEC-S-SCC----CEEEECTTSCEEEEEETTTTEEEEEE
T ss_pred             ccEEECCCCCEEEEECCCCCCEEEEEEEcCC-CCcEEEeeEecC-C-CCC----ceEEECCCCCEEEEEECCCCCEEEEE
Confidence            89999999998876665  489999998622 122  2333322 1 111    123343  55677776 568899987


Q ss_pred             CCCCCCCceee--eCCCCCeEEEEEe
Q 007283          310 ANDLEKSPLQL--SGHMKNVTALTVL  333 (609)
Q Consensus       310 ~~~~~~~~~~~--~~h~~~v~~~~~~  333 (609)
                      ++........+  ..+...+.++.|.
T Consensus       335 ~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          335 RDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             ECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EECCCCcEeecceeeeCCCCeEEEEc
Confidence            76433332222  1234456666653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.77  E-value=5.9e-17  Score=160.54  Aligned_cols=239  Identities=13%  Similarity=0.102  Sum_probs=165.9

Q ss_pred             EeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCC-CCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceeeEEEee
Q 007283           22 ISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHA-YPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLKKEFRV   98 (609)
Q Consensus        22 ~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~~~~~~   98 (609)
                      +++++++..++.. ..+.+.+||+.+++....+..+. ..+..++|+|+|++++ +...+++|.+||..+++... .+..
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~-~~~~   83 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTF-HANL   83 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE-EEES
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEE-EEEc
Confidence            4566666666654 45899999999887766565433 2578999999998664 56678999999998876433 2322


Q ss_pred             c------ccceeEEEECCCCCEEEEEECC---------CCcceEEEEEcCCC---CeeEEEecCCccEEEEEEeeCCCeE
Q 007283           99 L------SGRIDDLQWSPDGLRIVACGDG---------KGKSLVRAFMWDSG---TNVGEFDGHSRRVLSCAFKPSRPFR  160 (609)
Q Consensus        99 ~------~~~v~~~~~spdg~~l~~~~~~---------~~~~~~~~~~~~~~---~~~~~~~~h~~~v~~~~~~p~~~~~  160 (609)
                      .      ...+..++|+|||++|++.+.+         .....+.+|+.+++   ..+..+.. ...+.+++|+|++. +
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-L  161 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-E
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-E
Confidence            1      2237889999999999987732         00124556665553   22333433 34688899999998 4


Q ss_pred             EEEecCCCeEEEEeCCCCceeeeccCcc----------------------------------------------------
Q 007283          161 IATCGEDFLVNFYEGPPFKFKLSHRGHS----------------------------------------------------  188 (609)
Q Consensus       161 i~t~~~d~~i~~~~~~~~~~~~~~~~h~----------------------------------------------------  188 (609)
                      ++ ++.+  +.+||..+++....+..+.                                                    
T Consensus       162 ~~-~~~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~  238 (349)
T 1jmx_B          162 YV-AGPD--IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  238 (349)
T ss_dssp             EE-ESSS--EEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             EE-ccCc--EEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEE
Confidence            55 4444  8899987766544332111                                                    


Q ss_pred             ----------------cceEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283          189 ----------------NFVNCVRFSP-DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       189 ----------------~~v~~l~~s~-dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                                      ..+..++|+| ||++++++  ++.+.+||..+++.+..+.    ....+.+++|+||+++|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~~~  312 (349)
T 1jmx_B          239 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAAN----LDHTYYCVAFDKKGDKLYLG  312 (349)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEE----CSSCCCEEEECSSSSCEEEE
T ss_pred             eccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEc----CCCCccceEECCCCCEEEEe
Confidence                            1345678889 99988877  8899999999888766553    22347799999999999988


Q ss_pred             eCCCcEEEeecccCCCCceEEEec
Q 007283          252 SADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       252 s~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                      +.++.|++||+.   .++....+.
T Consensus       313 ~~~~~v~v~d~~---~~~~~~~~~  333 (349)
T 1jmx_B          313 GTFNDLAVFNPD---TLEKVKNIK  333 (349)
T ss_dssp             SBSSEEEEEETT---TTEEEEEEE
T ss_pred             cCCCeEEEEecc---ccceeeeee
Confidence            889999999986   344555443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=1.7e-17  Score=165.73  Aligned_cols=243  Identities=9%  Similarity=0.014  Sum_probs=163.5

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCC-CCccccccccCC--CCcEEEEECCCCCE--EEEEe-------------CCC
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLS-NPLQVSIYGEHA--YPATVARFSPNGEW--IASAD-------------VSG   79 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~-~~~~~~~~~~h~--~~v~~~~~sp~g~~--las~~-------------~d~   79 (609)
                      .+..++++|||+.|+..+...+.+|++. +++...... |.  +...+++|+|||++  +++++             .++
T Consensus        41 ~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~-~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeE-eecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            5678999999998876654489999996 665433222 11  23566899999994  55664             689


Q ss_pred             cEEEEcCCC-CceeeEEEee----cccceeEEEECCCCCEEEEEECCCCcceEEEEEcC-CCCee--EEEe--cCCccEE
Q 007283           80 TVRIWGAHN-DHVLKKEFRV----LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD-SGTNV--GEFD--GHSRRVL  149 (609)
Q Consensus        80 ~i~vWd~~~-~~~~~~~~~~----~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~--~~~~--~h~~~v~  149 (609)
                      ++++|++.. ++. ...+..    +...+..++|+|||++|+++..+.  ..+++|+.+ .++..  ..+.  .|...+.
T Consensus       120 ~v~v~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~--~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          120 YGNVFSVSETGKL-EKNVQNYEYQENTGIHGMVFDPTETYLYSADLTA--NKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             EEEEEEECTTCCE-EEEEEEEECCTTCCEEEEEECTTSSEEEEEETTT--TEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             eEEEEccCCCCcC-cceEeeEEeCCCCcceEEEECCCCCEEEEEcCCC--CEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            999999974 332 222222    345789999999999888765433  246677776 45432  3333  2456789


Q ss_pred             EEEEeeCCCeEEEEecCCCeEEEEeCC--CCceee------ec----cCccc------ceEEEE-EcCCCCEEEEEeCCC
Q 007283          150 SCAFKPSRPFRIATCGEDFLVNFYEGP--PFKFKL------SH----RGHSN------FVNCVR-FSPDGSKFISVSSDK  210 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~--~~~~~~------~~----~~h~~------~v~~l~-~s~dg~~l~s~~~d~  210 (609)
                      .++|+|++..++++...++.+.+|+..  +++...      .+    .+|..      .+..++ |+|||++|+++..+.
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            999999998755555567889998643  444321      12    12332      588999 999999887765432


Q ss_pred             ------cEEEEeCC-CCccccccCcCCCCccceEEEEECC---CCCeEEEEeCC-CcEEEeeccc
Q 007283          211 ------KGIIYDGK-TADKIGELSPEDGHKGSVYAVSWSP---DGKQVLTASAD-KSAKVWDISE  264 (609)
Q Consensus       211 ------~i~iwd~~-~~~~~~~~~~~~~h~~~V~~l~~sp---d~~~l~s~s~d-~~i~iwd~~~  264 (609)
                            .+.+|++. +++..........+...+..++|+|   ||++|++++.+ ++|++|+++.
T Consensus       277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence                  79999985 4543221100112334466789999   89999998865 8999999863

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.76  E-value=4.6e-17  Score=165.74  Aligned_cols=159  Identities=18%  Similarity=0.234  Sum_probs=122.8

Q ss_pred             cCCceeEEEEcCCCCEEE----EEeCCCcEEEEEecCC-----e----eeeeEEEecCCCceEEEEECCC-CCEEEEEeC
Q 007283          446 LRFPVTASAIAPDGSEAI----IGSQDGKLRVYSIRGD-----T----LTEEAVLEKHRGAVSVIRYSPD-VSMFASGDV  511 (609)
Q Consensus       446 ~~~~~~~~~~sp~g~~l~----~gs~dg~i~iw~~~~~-----~----~~~~~~~~~h~~~i~~v~~s~~-~~~l~s~s~  511 (609)
                      +..++.+++++|+|+++|    +|+.|+.|++||+.+.     .    +.....+.+|.+.|.+++|+|+ +.++++++.
T Consensus        91 ~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~  170 (434)
T 2oit_A           91 MKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLA  170 (434)
T ss_dssp             CSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEET
T ss_pred             CCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEEC
Confidence            445799999999999999    7889999999998653     1    1123456779999999999998 899999999


Q ss_pred             CCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEe------ccccCCeEEEE
Q 007283          512 NREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIK------GAHLGGVYGLA  585 (609)
Q Consensus       512 d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~------~~h~~~v~~~~  585 (609)
                      |+++++||+.+.... .....|...|++++|+|+|++|++|+.||+|++||+. .. ....+.      ..|...|.+++
T Consensus       171 Dg~v~iwD~~~~~~~-~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~-~~~~~~~~~~~~~~~~~~v~~v~  247 (434)
T 2oit_A          171 DGSIAVLQVTETVKV-CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQ-EKKVIPCPPFYESDHPVRVLDVL  247 (434)
T ss_dssp             TSCEEEEEESSSEEE-EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CC-EEEEECCCTTCCTTSCEEEEEEE
T ss_pred             CCeEEEEEcCCCcce-eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-Cc-ccccccCCcccCCCCceeEEEEE
Confidence            999999999876443 3345688999999999999999999999999999986 22 111111      12344799999


Q ss_pred             EcC-CCeEEE-EeCCCc------EEEEEcc
Q 007283          586 FTD-EHSVVS-SGEDAC------VRVWRLT  607 (609)
Q Consensus       586 ~s~-~~~l~s-~s~D~~------i~~W~~~  607 (609)
                      |+. ..++++ .+.||.      +++|++.
T Consensus       248 w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~  277 (434)
T 2oit_A          248 WIGTYVFAIVYAAADGTLETSPDVVMALLP  277 (434)
T ss_dssp             EEETTEEEEEEEETTCCSSSCCEEEEEECC
T ss_pred             EecCceEEEEEccCCCccCCCCceEEEEec
Confidence            994 444443 444533      8999985

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.75  E-value=1.2e-16  Score=175.01  Aligned_cols=239  Identities=10%  Similarity=0.096  Sum_probs=162.1

Q ss_pred             cCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCC---c--EEEEECCCCCEEEEEeCC---------CcE
Q 007283           16 RGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYP---A--TVARFSPNGEWIASADVS---------GTV   81 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~---v--~~~~~sp~g~~las~~~d---------~~i   81 (609)
                      ++....+.++|||++++.. ++.+.+|++.+++....+.+|...   +  ..++|||||++||.++.+         +.+
T Consensus        16 ~~~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             cccccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            3445589999999877776 779999999998877777777643   2  337889999999988876         456


Q ss_pred             EEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE-EEecCCccE------------
Q 007283           82 RIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG-EFDGHSRRV------------  148 (609)
Q Consensus        82 ~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~v------------  148 (609)
                      .+||+.+++..  .+..+.+.+..++|||||++|+.+.++    .+.+++.+.+.... +..++...+            
T Consensus        95 ~~~d~~~~~~~--~l~~~~~~~~~~~~SPdG~~la~~~~~----~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee  168 (740)
T 4a5s_A           95 DIYDLNKRQLI--TEERIPNNTQWVTWSPVGHKLAYVWNN----DIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEE  168 (740)
T ss_dssp             EEEETTTTEEC--CSSCCCTTEEEEEECSSTTCEEEEETT----EEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHH
T ss_pred             EEEECCCCcEE--EcccCCCcceeeEECCCCCEEEEEECC----eEEEEECCCCceEEEcCCCCccceecCcccccccch
Confidence            69999987642  355667789999999999999998753    23444433443222 122333222            


Q ss_pred             -----EEEEEeeCCCeEEEEecCC------------------------------------CeEEEEeCCC---C---cee
Q 007283          149 -----LSCAFKPSRPFRIATCGED------------------------------------FLVNFYEGPP---F---KFK  181 (609)
Q Consensus       149 -----~~~~~~p~~~~~i~t~~~d------------------------------------~~i~~~~~~~---~---~~~  181 (609)
                           ..+.|+|||.. ||..+.|                                    ..+.+||...   +   +..
T Consensus       169 ~~~~~~~~~wSpDg~~-la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~  247 (740)
T 4a5s_A          169 VFSAYSALWWSPNGTF-LAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI  247 (740)
T ss_dssp             TSSSSBCEEECTTSSE-EEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE
T ss_pred             hcCCCcceEECCCCCE-EEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE
Confidence                 24899999986 5544211                                    1467788776   5   222


Q ss_pred             eecc-----CcccceEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCc----cc--cccCcCCCCccceE-----EEEE
Q 007283          182 LSHR-----GHSNFVNCVRFSPDGSKFISVSS----DKKGIIYDGKTAD----KI--GELSPEDGHKGSVY-----AVSW  241 (609)
Q Consensus       182 ~~~~-----~h~~~v~~l~~s~dg~~l~s~~~----d~~i~iwd~~~~~----~~--~~~~~~~~h~~~V~-----~l~~  241 (609)
                      ....     +|...+..++|+|||+.++....    +..|.+||..+++    +.  ..+. ..+|.+.|.     .+.|
T Consensus       248 ~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~f  326 (740)
T 4a5s_A          248 QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHF  326 (740)
T ss_dssp             EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEE
T ss_pred             EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceE
Confidence            2211     47888999999999997665532    3478999988876    22  2111 124555444     7899


Q ss_pred             CCCCCeEE-EEeC-C--CcEEEeecc
Q 007283          242 SPDGKQVL-TASA-D--KSAKVWDIS  263 (609)
Q Consensus       242 spd~~~l~-s~s~-d--~~i~iwd~~  263 (609)
                      +|||+.|+ ..+. +  .+|++||+.
T Consensus       327 spDG~~l~~~~s~~~G~~~l~~~~~~  352 (740)
T 4a5s_A          327 TLDGNSFYKIISNEEGYRHICYFQID  352 (740)
T ss_dssp             CTTSSEEEEEEECTTSCEEEEEEETT
T ss_pred             cCCCCEEEEEEEcCCCceEEEEEECC
Confidence            99999877 6653 3  467778875

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=1.7e-16  Score=171.88  Aligned_cols=203  Identities=13%  Similarity=0.144  Sum_probs=144.8

Q ss_pred             ccccccCCCCcEEEEECCCCCEEEEE--eCCCcEEEEcCCCCceeeEEEeeccccee---------EEEEC--CCCCE-E
Q 007283           50 VSIYGEHAYPATVARFSPNGEWIASA--DVSGTVRIWGAHNDHVLKKEFRVLSGRID---------DLQWS--PDGLR-I  115 (609)
Q Consensus        50 ~~~~~~h~~~v~~~~~sp~g~~las~--~~d~~i~vWd~~~~~~~~~~~~~~~~~v~---------~~~~s--pdg~~-l  115 (609)
                      ...+.+|...+..++|++++-++++.  +.+++.+||....+. ....+..+...+.         ..+|+  |||++ |
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADG-AEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTS-CEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             HHHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCC-CcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence            34567899999999999998888877  668899999864333 2334555555555         56665  99999 7


Q ss_pred             EEEECCCCcceEEEEEcCCC----CeeEEEec-----CCccEEEEEEeeCCCeEEEEecCC----------CeEEEEeCC
Q 007283          116 VACGDGKGKSLVRAFMWDSG----TNVGEFDG-----HSRRVLSCAFKPSRPFRIATCGED----------FLVNFYEGP  176 (609)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-----h~~~v~~~~~~p~~~~~i~t~~~d----------~~i~~~~~~  176 (609)
                      +.+.+..    .++|.++..    .....+..     |...+..++|+|++.. |+.++.+          ..+.+|+..
T Consensus        95 a~~~~~~----~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~~~~~~~~i~~~~~~  169 (662)
T 3azo_A           95 VFTHFGD----QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGE-VWCMAEEFTGEGPSDVRRFLAAVPLD  169 (662)
T ss_dssp             EEEBTTT----CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTE-EEEEEEEECSSSTTCEEEEEEEEETT
T ss_pred             EEEECCC----CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCE-EEEEEecccCCCCCCceeEEEEEECC
Confidence            7766542    346777754    55556665     6778999999999986 6555555          478889877


Q ss_pred             C------Cceeeecc-CcccceEEEEEcCCCCEEEEEeCC--------CcEEEEeCC-CCc--cccccCcCCCCccceEE
Q 007283          177 P------FKFKLSHR-GHSNFVNCVRFSPDGSKFISVSSD--------KKGIIYDGK-TAD--KIGELSPEDGHKGSVYA  238 (609)
Q Consensus       177 ~------~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~d--------~~i~iwd~~-~~~--~~~~~~~~~~h~~~V~~  238 (609)
                      .      ++.. .+. .+...+..++|||||++|+.++.+        ..+.+||.. +++  ....+.  .+|...+..
T Consensus       170 ~~~~~~~~~~~-~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~--~~~~~~~~~  246 (662)
T 3azo_A          170 GSAAADRSAVR-ELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL--GGPEEAIAQ  246 (662)
T ss_dssp             STTTTCGGGSE-ESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE--EETTBCEEE
T ss_pred             CCccccCCcee-EEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC--CCCCceEcc
Confidence            6      4443 333 455678889999999999988755        379999988 451  222332  245678999


Q ss_pred             EEECCCCCeEEEEeCCCcEEEee
Q 007283          239 VSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       239 l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      +.|+|||++++++..++..++|.
T Consensus       247 ~~~spdg~l~~~~~~~~~~~l~~  269 (662)
T 3azo_A          247 AEWAPDGSLIVATDRTGWWNLHR  269 (662)
T ss_dssp             EEECTTSCEEEEECTTSSCEEEE
T ss_pred             eEECCCCeEEEEECCCCCeEEEE
Confidence            99999999888887788545544

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.74  E-value=3.2e-16  Score=157.83  Aligned_cols=163  Identities=10%  Similarity=0.042  Sum_probs=107.9

Q ss_pred             cCCCCceeeEEEeecccceeE-----EEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCe
Q 007283           85 GAHNDHVLKKEFRVLSGRIDD-----LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPF  159 (609)
Q Consensus        85 d~~~~~~~~~~~~~~~~~v~~-----~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (609)
                      |..++.. ...++.+......     .+|||||++|+.+++..+...+.+++.+.+.......++...+....|+|++..
T Consensus        16 ~~~~g~~-~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~   94 (388)
T 3pe7_A           16 DASTGAQ-VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDA   94 (388)
T ss_dssp             CTTTCCE-EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSE
T ss_pred             cCCCCcc-eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCE
Confidence            4444432 2345555544444     889999999999886433323333344444444444455555556789999985


Q ss_pred             EEEEecCCCeEEEEeCCCCceeeeccCcccceEEE--EEcCCCCEEEEEe----------------------CCCcEEEE
Q 007283          160 RIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCV--RFSPDGSKFISVS----------------------SDKKGIIY  215 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l--~~s~dg~~l~s~~----------------------~d~~i~iw  215 (609)
                       |+.++.+..+.+||..+++....+..+...+...  .++|+|++++...                      .+..+.+|
T Consensus        95 -l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (388)
T 3pe7_A           95 -LFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRV  173 (388)
T ss_dssp             -EEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEE
T ss_pred             -EEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEE
Confidence             7777788899999998887665555555545433  3489999877432                      34678889


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECC-CCCeEEEEeC
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSP-DGKQVLTASA  253 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~  253 (609)
                      |..+++.....    .+...+..+.|+| ||+.|+..+.
T Consensus       174 d~~~g~~~~l~----~~~~~~~~~~~sp~dg~~l~~~~~  208 (388)
T 3pe7_A          174 DLKTGESTVIL----QENQWLGHPIYRPYDDSTVAFCHE  208 (388)
T ss_dssp             ETTTCCEEEEE----EESSCEEEEEEETTEEEEEEEEEC
T ss_pred             ECCCCceEEee----cCCccccccEECCCCCCEEEEEEe
Confidence            98887643222    3456688999999 9988887764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=2e-15  Score=148.14  Aligned_cols=245  Identities=15%  Similarity=0.168  Sum_probs=177.2

Q ss_pred             cCceeEEeecCCCCeEEEeCCC-------------------------EEEEEeCCCCccccccc-cCCCCcEEEEECCCC
Q 007283           16 RGRGILISGHPKSNSILYTNGR-------------------------SVIILDLSNPLQVSIYG-EHAYPATVARFSPNG   69 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~~~-------------------------~~~i~~~~~~~~~~~~~-~h~~~v~~~~~sp~g   69 (609)
                      -+.+..++++|+|+.++...++                         .+++||..+++....+. ++-.....++++|+|
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            5678899999999988877554                         69999998877765554 444578999999999


Q ss_pred             CEEEEEeCCCcEEEEcCCCCceeeEEEe---------ecccceeEEEECC-CCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283           70 EWIASADVSGTVRIWGAHNDHVLKKEFR---------VLSGRIDDLQWSP-DGLRIVACGDGKGKSLVRAFMWDSGTNVG  139 (609)
Q Consensus        70 ~~las~~~d~~i~vWd~~~~~~~~~~~~---------~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (609)
                      +++++...++.|++|+..........+.         .+......++|+| +|..+++-+.+.  ..++.++ ..+..+.
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~--~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCN--SRIVQFS-PSGKFVT  179 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSC--CEEEEEC-TTSCEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCC--CeEEEEc-CCCCEEE
Confidence            9999988899999999865421222331         2223578999999 777766643112  2333443 2344455


Q ss_pred             EEec----------CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec--cCcccceEEEEEcC------CCC
Q 007283          140 EFDG----------HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH--RGHSNFVNCVRFSP------DGS  201 (609)
Q Consensus       140 ~~~~----------h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~--~~h~~~v~~l~~s~------dg~  201 (609)
                      .+..          +......++++|++..++++...++.|++|+..+++....+  .++...+..++|+|      +|+
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~  259 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGK  259 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECC
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCC
Confidence            4432          22348899999995566888888899999998877766655  34667788999999      333


Q ss_pred             EEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          202 KFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       202 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .+++...+..+++|+..+++.+..+....++.....+++++|+|.++++...+++|++|++.
T Consensus       260 ~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          260 PYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             CCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred             EEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence            22223345589999999998877764334566778999999999888899999999999975

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.73  E-value=1.6e-15  Score=151.33  Aligned_cols=250  Identities=12%  Similarity=0.121  Sum_probs=157.4

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCC-CCceeeEEEee-cccceeEEEECCCCCE-EEEEEC-------CC---
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAH-NDHVLKKEFRV-LSGRIDDLQWSPDGLR-IVACGD-------GK---  122 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~-~~~~~~~~~~~-~~~~v~~~~~spdg~~-l~~~~~-------~~---  122 (609)
                      +..++..++|+|||++|++++.+ +|++|++. +++... .... ..+.+..++|+|||++ ++.+.+       +.   
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  115 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFY  115 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence            33468899999999999988887 99999987 554322 1121 1134567999999986 333332       10   


Q ss_pred             -CcceEEEEEcCC-CCeeEEEe----cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC-CCceee--ecc--Ccccce
Q 007283          123 -GKSLVRAFMWDS-GTNVGEFD----GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PFKFKL--SHR--GHSNFV  191 (609)
Q Consensus       123 -~~~~~~~~~~~~-~~~~~~~~----~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~-~~~~~~--~~~--~h~~~v  191 (609)
                       ....+++|..+. +.....+.    .+...+..++|+|++..++++...+..|.+|+.. +++...  .+.  .|...+
T Consensus       116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p  195 (365)
T 1jof_A          116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHP  195 (365)
T ss_dssp             SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCE
T ss_pred             cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCC
Confidence             122456777663 44333332    2456789999999998655554456789999987 555432  222  245668


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEeCC--CCccc------cccCc-CCCCcc------ceEEEE-ECCCCCeEEEEeCC
Q 007283          192 NCVRFSPDGSKFISVSS-DKKGIIYDGK--TADKI------GELSP-EDGHKG------SVYAVS-WSPDGKQVLTASAD  254 (609)
Q Consensus       192 ~~l~~s~dg~~l~s~~~-d~~i~iwd~~--~~~~~------~~~~~-~~~h~~------~V~~l~-~spd~~~l~s~s~d  254 (609)
                      ..++|+|||++|++++. ++.+.+|+..  +++..      ..+.. ..+|..      .+..++ |+|||++|+++..+
T Consensus       196 ~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~  275 (365)
T 1jof_A          196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA  275 (365)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred             CEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence            99999999998887775 6889998754  45431      11211 012333      588999 99999988776543


Q ss_pred             -C-----cEEEeecccCCCCceEEE---eccCCCCCccceEEEEEE---cCCeEEEEEcC-CcEEEEeCCC
Q 007283          255 -K-----SAKVWDISEDNHGKLKKT---LTPSGSGGVDDMLVGCLW---QNDFLVIVSLG-GTISIFSAND  312 (609)
Q Consensus       255 -~-----~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-g~i~~~~~~~  312 (609)
                       .     +|++|++..  .+++...   ..... .....  +.+..   ++++++++..+ +.+.+|+.+.
T Consensus       276 ~~~~~~~~i~v~~~~~--~g~~~~~~~~~~~~~-~~~~~--~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~  341 (365)
T 1jof_A          276 NKFELQGYIAGFKLRD--CGSIEKQLFLSPTPT-SGGHS--NAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             SSTTSCCEEEEEEECT--TSCEEEEEEEEECSS-CCTTC--CCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             CCCCCCCeEEEEEECC--CCCEEEeeeeeecCC-CCccc--ceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence             2     899999863  2333321   21111 11111  22333   46777777664 8899998653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=5.7e-15  Score=148.69  Aligned_cols=299  Identities=10%  Similarity=0.022  Sum_probs=181.3

Q ss_pred             EEeCCCCccccccccCCCCcEE-----EEECCCCCEEEEEeC-CCc--EEEEcCCCCceeeEEEeecccceeEEEECCCC
Q 007283           41 ILDLSNPLQVSIYGEHAYPATV-----ARFSPNGEWIASADV-SGT--VRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDG  112 (609)
Q Consensus        41 i~~~~~~~~~~~~~~h~~~v~~-----~~~sp~g~~las~~~-d~~--i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg  112 (609)
                      ..+..++.....+..|......     ++|||||++||.++. ++.  |.+||..+++.. .....+...+..++|||||
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~-~lt~~~~~~~~~~~~spdg   92 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT-QLTEGRGDNTFGGFLSPDD   92 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE-ECCCSSCBCSSSCEECTTS
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE-EeeeCCCCCccceEEcCCC
Confidence            3455566666667777766665     889999999998876 675  677787776532 2223334445578999999


Q ss_pred             CEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEE--EeeCCCeEEEE---------------------ecCCCe
Q 007283          113 LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCA--FKPSRPFRIAT---------------------CGEDFL  169 (609)
Q Consensus       113 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~--~~p~~~~~i~t---------------------~~~d~~  169 (609)
                      ++|+.+..+.   .+.+++.+++.....+..+...+....  ++|++..+++.                     .+.+..
T Consensus        93 ~~l~~~~~~~---~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (388)
T 3pe7_A           93 DALFYVKDGR---NLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCR  169 (388)
T ss_dssp             SEEEEEETTT---EEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEE
T ss_pred             CEEEEEeCCC---eEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcce
Confidence            9999988543   455666667666555666666554444  47888753321                     234467


Q ss_pred             EEEEeCCCCceeeeccCcccceEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCccccccCcCCCCc-cceEEEEE
Q 007283          170 VNFYEGPPFKFKLSHRGHSNFVNCVRFSP-DGSKFISVSSD------KKGIIYDGKTADKIGELSPEDGHK-GSVYAVSW  241 (609)
Q Consensus       170 i~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~h~-~~V~~l~~  241 (609)
                      +.+||..+++... +..+...+..+.|+| ||+.|+.+..+      ..+.++|...++. ..+..  .+. ..+..+.|
T Consensus       170 l~~~d~~~g~~~~-l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~--~~~~~~~~~~~~  245 (388)
T 3pe7_A          170 LMRVDLKTGESTV-ILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKT--HAEGESCTHEFW  245 (388)
T ss_dssp             EEEEETTTCCEEE-EEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCC--CCTTEEEEEEEE
T ss_pred             EEEEECCCCceEE-eecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeee--CCCCcccccceE
Confidence            8889988775543 334566789999999 99999887764      3677888765443 23321  222 35888999


Q ss_pred             CCCCCeEEEEeCC-----CcEEEeecccCCCCceEEEeccCCC----CCccceEEEEEEcCCeEEEE---------EcCC
Q 007283          242 SPDGKQVLTASAD-----KSAKVWDISEDNHGKLKKTLTPSGS----GGVDDMLVGCLWQNDFLVIV---------SLGG  303 (609)
Q Consensus       242 spd~~~l~s~s~d-----~~i~iwd~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~---------~~~g  303 (609)
                      +|||+.|+..+.+     ..|++||+...   +..........    ......  .+..++..++..         ..+.
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g---~~~~l~~~~~~~~~~~~~~~~--~~spdg~~l~~~~~~~~~~~~~~~~  320 (388)
T 3pe7_A          246 VPDGSALVYVSYLKGSPDRFIYSADPETL---ENRQLTSMPACSHLMSNYDGS--LMVGDGSDAPVDVQDDSGYKIENDP  320 (388)
T ss_dssp             CTTSSCEEEEEEETTCCCEEEEEECTTTC---CEEEEEEECCEEEEEECTTSS--EEEEEECCC------------CCCC
T ss_pred             CCCCCEEEEEecCCCCCcceEEEEecCCC---ceEEEEcCCCceeeeecCCCC--eEccCCCcceeEeeeccccccCCCC
Confidence            9999988665532     23999998743   22211111110    000001  122334444432         3355


Q ss_pred             cEEEEeCCCCCCCceeeeCCCC-----------CeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283          304 TISIFSANDLEKSPLQLSGHMK-----------NVTALTVLNIDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       304 ~i~~~~~~~~~~~~~~~~~h~~-----------~v~~~~~~~~~~~~~~t~s~dg~i~~W~~  354 (609)
                      .|++|+....  ....+..|..           .+..++|++....+++++..++...+|..
T Consensus       321 ~i~~~d~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~  380 (388)
T 3pe7_A          321 FLYVFNMKNG--TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLA  380 (388)
T ss_dssp             EEEEEETTTT--EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred             EEEEEeccCC--ceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEE
Confidence            7888887643  2334555554           46667776543344555556788777754

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=7.1e-15  Score=160.89  Aligned_cols=203  Identities=11%  Similarity=0.100  Sum_probs=137.1

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccc---e--eEEEECCCCCEEEEEECCCCc----ceE
Q 007283           57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR---I--DDLQWSPDGLRIVACGDGKGK----SLV  127 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~---v--~~~~~spdg~~l~~~~~~~~~----~~~  127 (609)
                      ......++|+|||++|+++  |++|++||+.+++.. ..+..+...   +  ..++|||||++|+...+....    ...
T Consensus        16 ~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~   92 (740)
T 4a5s_A           16 RLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSS-VFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA   92 (740)
T ss_dssp             CCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEE-EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred             cccccccEECCCCcEEEEc--CCcEEEEECCCCceE-EEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence            3446688999999999997  999999999987643 334444322   2  348999999999987753211    012


Q ss_pred             EEEEcC--CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee-eccCcccce-------------
Q 007283          128 RAFMWD--SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL-SHRGHSNFV-------------  191 (609)
Q Consensus       128 ~~~~~~--~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~-~~~~h~~~v-------------  191 (609)
                      .++.|+  ++. ...+..|...+...+|||||.. ||.+ .++.|.+|+...++..+ +..++...+             
T Consensus        93 ~~~~~d~~~~~-~~~l~~~~~~~~~~~~SPdG~~-la~~-~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~  169 (740)
T 4a5s_A           93 SYDIYDLNKRQ-LITEERIPNNTQWVTWSPVGHK-LAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEV  169 (740)
T ss_dssp             EEEEEETTTTE-ECCSSCCCTTEEEEEECSSTTC-EEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHT
T ss_pred             EEEEEECCCCc-EEEcccCCCcceeeEECCCCCE-EEEE-ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchh
Confidence            344555  443 3346677788999999999986 5555 46789999987665433 233443322             


Q ss_pred             ----EEEEEcCCCCEEEEEeCCC------------------------------------cEEEEeCCC---Ccc--cccc
Q 007283          192 ----NCVRFSPDGSKFISVSSDK------------------------------------KGIIYDGKT---ADK--IGEL  226 (609)
Q Consensus       192 ----~~l~~s~dg~~l~s~~~d~------------------------------------~i~iwd~~~---~~~--~~~~  226 (609)
                          ..+.|||||+.||.++.|.                                    .+.+||..+   ++.  ...+
T Consensus       170 ~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l  249 (740)
T 4a5s_A          170 FSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQI  249 (740)
T ss_dssp             SSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEE
T ss_pred             cCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEe
Confidence                3489999999999886332                                    477788887   631  1122


Q ss_pred             CcC---CCCccceEEEEECCCCCeEEEEeC----CCcEEEeecccC
Q 007283          227 SPE---DGHKGSVYAVSWSPDGKQVLTASA----DKSAKVWDISED  265 (609)
Q Consensus       227 ~~~---~~h~~~V~~l~~spd~~~l~s~s~----d~~i~iwd~~~~  265 (609)
                      ...   .+|...+..++|+|||+.++....    +..|++||+..+
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg  295 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES  295 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence            110   137778999999999997665533    347999998753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.67  E-value=8.9e-15  Score=158.40  Aligned_cols=337  Identities=12%  Similarity=0.034  Sum_probs=190.5

Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEe--cCCCeEEEEeCCCCceeeeccCcccceE---------EEEEc--CCCCE-E
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATC--GEDFLVNFYEGPPFKFKLSHRGHSNFVN---------CVRFS--PDGSK-F  203 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~--~~d~~i~~~~~~~~~~~~~~~~h~~~v~---------~l~~s--~dg~~-l  203 (609)
                      ...+.+|...+..++|+++. ..++..  +.++...+|..........+..|...+.         ...|+  |||+. |
T Consensus        16 ~~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~l   94 (662)
T 3azo_A           16 AALVASRSGRPACVGAVGDE-VWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLL   94 (662)
T ss_dssp             HHHHHHTCSCCEEEEEETTE-EEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEE
T ss_pred             HHHHhhcCCccceeEEcCCe-EEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEE
Confidence            34466888999999999875 346666  6678888887433333444555555544         55555  99998 7


Q ss_pred             EEEeC-CCcEEEEeCC--C-CccccccCcCC--CCccceEEEEECCCCCeEEEEeCC----------CcEEEeecccCCC
Q 007283          204 ISVSS-DKKGIIYDGK--T-ADKIGELSPED--GHKGSVYAVSWSPDGKQVLTASAD----------KSAKVWDISEDNH  267 (609)
Q Consensus       204 ~s~~~-d~~i~iwd~~--~-~~~~~~~~~~~--~h~~~V~~l~~spd~~~l~s~s~d----------~~i~iwd~~~~~~  267 (609)
                      +.++. +..|.+++..  . ++ ...+....  .|...+.+++|+|||+.|++++.|          .+|++||+.....
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~  173 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA  173 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence            77664 5567777655  2 33 33332110  166788999999999999998876          4677777642000


Q ss_pred             ---CceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeee-CCCCCeEEEEEecCCCCEEEEE
Q 007283          268 ---GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLS-GHMKNVTALTVLNIDPKVILSS  343 (609)
Q Consensus       268 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~t~  343 (609)
                         +..                                               ..+. .+...+..+.+++ +++.|+.+
T Consensus       174 ~~~~~~-----------------------------------------------~~l~~~~~~~~~~~~~Sp-DG~~la~~  205 (662)
T 3azo_A          174 ADRSAV-----------------------------------------------RELSDDAHRFVTGPRLSP-DGRQAVWL  205 (662)
T ss_dssp             TCGGGS-----------------------------------------------EESSCSCSSEECCCEECT-TSSEEEEE
T ss_pred             ccCCce-----------------------------------------------eEEEecCCCcccCceECC-CCCEEEEE
Confidence               111                                               1111 2223334445543 45666665


Q ss_pred             ecCC--------cEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeE
Q 007283          344 SYDG--------LIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS  415 (609)
Q Consensus       344 s~dg--------~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  415 (609)
                      +.++        .|.+|+...                                       .+...               
T Consensus       206 ~~~~~~~~~~~~~i~~~d~~~---------------------------------------~g~~~---------------  231 (662)
T 3azo_A          206 AWDHPRMPWEGTELKTARVTE---------------------------------------DGRFA---------------  231 (662)
T ss_dssp             EECTTCCTTTCEEEEEEEECT---------------------------------------TSCEE---------------
T ss_pred             ECCCCCCCCCCcEEEEEEECC---------------------------------------CCccc---------------
Confidence            5443        344443220                                       00000               


Q ss_pred             eeccCCcEEEEEecccEEEeeCCeeeEEe-ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEec--CCeeeeeEEEecCCC
Q 007283          416 VALHYPELVLVSTDSGVVLLRGAEVVSTI-NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR--GDTLTEEAVLEKHRG  492 (609)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~--~~~~~~~~~~~~h~~  492 (609)
                                             +..... .....+..++++|||+++++++.|+..+||.++  ++...  .....+..
T Consensus       232 -----------------------~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~--~l~~~~~~  286 (662)
T 3azo_A          232 -----------------------DTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAAT--QLCRREEE  286 (662)
T ss_dssp             -----------------------EEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEE--ESSCCSSB
T ss_pred             -----------------------ccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCcee--eccccccc
Confidence                                   000000 011235678899999988888888855555543  44332  22222322


Q ss_pred             c--------eEEEEECCCCCEEEEEeCCCeEEEE--EccCCceEEeeecCCCCceEEE-EECCCCcEEEEEeCCCeEEEE
Q 007283          493 A--------VSVIRYSPDVSMFASGDVNREAIVW--DRVSREVKLKNMLYHTARINCL-AWSPNNSMVATGSLDTCVIIY  561 (609)
Q Consensus       493 ~--------i~~v~~s~~~~~l~s~s~d~~v~iw--d~~~~~~~~~~~~~h~~~i~~l-~~s~d~~~l~s~s~D~~v~vw  561 (609)
                      .        +..++|+|+++++++++. ++.++|  |..+++  .+.+..|...+..+ +++++.-.+++++.+....+|
T Consensus       287 ~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~--~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          287 FAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE--LVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             SSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE--EEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             ccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc--EEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            2        567899999999999998 999999  544443  34566677778877 665554556667777777777


Q ss_pred             EcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          562 EIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       562 ~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      .++........+...|...+....++ .+...+.+..+..+..|-+
T Consensus       364 ~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~dg~~i~~~~~  409 (662)
T 3azo_A          364 ELDTVTGRARTIGARHTDPVDPAYYPEPQIRTFTAPDGREIHAHIY  409 (662)
T ss_dssp             EEETTTCCEEEEESCCCCSSCGGGSCCCEEEEEECTTSCEEEEEEE
T ss_pred             EEECCCCceEEeecCCcccCCccccCcceEEEEEcCCCCEEEEEEE
Confidence            65432212233334444433333333 2222333333345555543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.67  E-value=5.9e-14  Score=139.26  Aligned_cols=292  Identities=16%  Similarity=0.116  Sum_probs=177.9

Q ss_pred             CCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCccccccCcCCC---C
Q 007283          166 EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS----------DKKGIIYDGKTADKIGELSPEDG---H  232 (609)
Q Consensus       166 ~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~---h  232 (609)
                      .|+.+.+||..+++....+..+..+  .++|+|||+++.++..          ++.|.+||..+.+.+..+.....   +
T Consensus        29 ~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~  106 (361)
T 2oiz_A           29 TESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQG  106 (361)
T ss_dssp             GGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCB
T ss_pred             ccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcccccc
Confidence            4678999998888877666665555  8999999999888762          56799999988877665532111   2


Q ss_pred             ccceEEEEECCCCCeEEEEeC--CCcEEEeecccCCCCceEEE-eccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          233 KGSVYAVSWSPDGKQVLTASA--DKSAKVWDISEDNHGKLKKT-LTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       233 ~~~V~~l~~spd~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      ......++|+|||++|+++..  +++|.+||+..   ++.... +...+                               
T Consensus       107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~---~~~~~~~i~~~~-------------------------------  152 (361)
T 2oiz_A          107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAK---GDYVEDVTAAAG-------------------------------  152 (361)
T ss_dssp             CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTT---TEEEEEEGGGTT-------------------------------
T ss_pred             CCCcceEEECCCCCEEEEECCCCCCeEEEEECCC---CcEEEEEecCCC-------------------------------
Confidence            234567999999999988864  58999999863   333333 21100                               


Q ss_pred             CCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceE
Q 007283          310 ANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKI  389 (609)
Q Consensus       310 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  389 (609)
                                       ...+.+.+..+..+++.+.||.+..|.......          +.         ....   ..
T Consensus       153 -----------------~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~----------~~---------~~~~---~~  193 (361)
T 2oiz_A          153 -----------------CWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK----------VA---------SQSR---SK  193 (361)
T ss_dssp             -----------------EEEEEECTTSSSEEEEEETTSSEEEEEECTTSS----------EE---------EEEE---CC
T ss_pred             -----------------cceeEEcCCCCeeEEEECCCCcEEEEEECCCCc----------Ee---------eecc---cc
Confidence                             001122222335677788888888775432100          00         0000   00


Q ss_pred             EEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCC
Q 007283          390 WRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDG  469 (609)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg  469 (609)
                      ..++.             .                                      ..+ ..+..+|++..++..+.++
T Consensus       194 ~~~~~-------------~--------------------------------------~~~-~~~~~~~~g~~~~~~~~~~  221 (361)
T 2oiz_A          194 QMFSV-------------K--------------------------------------DDP-IFIAPALDKDKAHFVSYYG  221 (361)
T ss_dssp             CCSCT-------------T--------------------------------------TSC-BCSCCEECSSEEEEEBTTS
T ss_pred             ceEcC-------------C--------------------------------------CCc-eEEEecccCCEEEEEeCCC
Confidence            00000             0                                      000 0111245666677777888


Q ss_pred             cEEEEEecCCeeeeeEEEec------CC----CceEEEEECCCCCEEEEEeC-----------CCeEEEEEccCCceEEe
Q 007283          470 KLRVYSIRGDTLTEEAVLEK------HR----GAVSVIRYSPDVSMFASGDV-----------NREAIVWDRVSREVKLK  528 (609)
Q Consensus       470 ~i~iw~~~~~~~~~~~~~~~------h~----~~i~~v~~s~~~~~l~s~s~-----------d~~v~iwd~~~~~~~~~  528 (609)
                      .|+++|+..+.........-      +.    .....++|+||+..+.++..           ..++.+||+.+.+. ++
T Consensus       222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~-v~  300 (361)
T 2oiz_A          222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR-VA  300 (361)
T ss_dssp             EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE-EE
T ss_pred             eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcE-EE
Confidence            89999886543221111110      01    11112689999877666543           35899999887764 34


Q ss_pred             eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcC
Q 007283          529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTD  588 (609)
Q Consensus       529 ~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~  588 (609)
                      .+..+.  +.+++|+|||++|++++. ++|.+||..+...+.+.....+...-..++|++
T Consensus       301 ~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p  357 (361)
T 2oiz_A          301 RIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHP  357 (361)
T ss_dssp             EEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECC
T ss_pred             EEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecC
Confidence            455555  999999999999998887 999999987652122333234555667788883

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=5.8e-15  Score=148.95  Aligned_cols=236  Identities=11%  Similarity=0.007  Sum_probs=147.7

Q ss_pred             eeEEeecCCCCeEEEeCC----CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeE
Q 007283           19 GILISGHPKSNSILYTNG----RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKK   94 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~~----~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~   94 (609)
                      ...++++|||+.|++...    ..+.++++.+++......++......++|||||++||.++.++.|.+|++.+++.. .
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~-~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQ-V  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEE-E
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcE-E
Confidence            346789999999988732    37889999887765443333333444789999999999999999999999876532 2


Q ss_pred             EEeecccceeE-------------------EEECCCCCEEEEEE--CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEE
Q 007283           95 EFRVLSGRIDD-------------------LQWSPDGLRIVACG--DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAF  153 (609)
Q Consensus        95 ~~~~~~~~v~~-------------------~~~spdg~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  153 (609)
                      ....+......                   ++|+||++.++...  .......+.+++.+.+... .+..+...+..+.|
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~~~~~~~~~~~~~~  195 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELE-VIHQDTAWLGHPIY  195 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEE-EEEEESSCEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEE-eeccCCcccccceE
Confidence            22222221111                   35677777655432  0112223344444444433 33356677899999


Q ss_pred             ee-CCCeEEEEecCC------CeEEEEeCCCCceeeeccCc-ccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCC
Q 007283          154 KP-SRPFRIATCGED------FLVNFYEGPPFKFKLSHRGH-SNFVNCVRFSPDGSKFISVSSD-----KKGIIYDGKTA  220 (609)
Q Consensus       154 ~p-~~~~~i~t~~~d------~~i~~~~~~~~~~~~~~~~h-~~~v~~l~~s~dg~~l~s~~~d-----~~i~iwd~~~~  220 (609)
                      +| ++.. ++..+.+      ..+.+|+....+........ ...+..+.|+|||+.|+.++.+     +.+.+||..++
T Consensus       196 sp~dg~~-l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g  274 (396)
T 3c5m_A          196 RPFDDST-VGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETL  274 (396)
T ss_dssp             ETTEEEE-EEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTC
T ss_pred             CCCCCCE-EEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCC
Confidence            99 6653 4333222      35777776554433323322 3358889999999988777644     44999998877


Q ss_pred             ccccccCcCCCCccceEEEEECC-CCCeEEEEeC----------------CCcEEEeecc
Q 007283          221 DKIGELSPEDGHKGSVYAVSWSP-DGKQVLTASA----------------DKSAKVWDIS  263 (609)
Q Consensus       221 ~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~----------------d~~i~iwd~~  263 (609)
                      +... +....+    .. +.|+| ||++++.++.                +..|++||+.
T Consensus       275 ~~~~-l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~  328 (396)
T 3c5m_A          275 ENEE-VMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTK  328 (396)
T ss_dssp             CEEE-EEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETT
T ss_pred             CeEE-eeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecc
Confidence            6432 211111    23 89999 9998887652                3678888875

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.65  E-value=1.3e-13  Score=136.34  Aligned_cols=256  Identities=17%  Similarity=0.218  Sum_probs=157.6

Q ss_pred             EEeecCCCCeEEEeC----------CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---Cc--EEEEc
Q 007283           21 LISGHPKSNSILYTN----------GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GT--VRIWG   85 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~----------~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~--i~vWd   85 (609)
                      ...+  ||+.++|..          ...+.++++.+++... +    ..+..++|||||++||.++.+   +.  |.+|+
T Consensus        19 ~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~   91 (347)
T 2gop_A           19 DPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIWVAD   91 (347)
T ss_dssp             EEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEE
T ss_pred             cceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEE
Confidence            4444  889888852          3468899998776543 3    468999999999999977653   34  66667


Q ss_pred             CCCCceeeEEEeecccceeEEEECCCCCEEEEEECCC-----------------C-----cceEEEEEcC--CCCeeEEE
Q 007283           86 AHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK-----------------G-----KSLVRAFMWD--SGTNVGEF  141 (609)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~-----------------~-----~~~~~~~~~~--~~~~~~~~  141 (609)
                      +.+++..  .+..... +..++|||||++|+......                 +     ....+++.|+  .+..+..+
T Consensus        92 ~~~g~~~--~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l  168 (347)
T 2gop_A           92 LETLSSK--KILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEF  168 (347)
T ss_dssp             TTTTEEE--EEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEE
T ss_pred             CCCCceE--EEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeee
Confidence            7665432  2333334 89999999999999886320                 0     0023345554  44432444


Q ss_pred             ecCCccEEEEEEeeCCCeEEEEecCC------C-eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC-----
Q 007283          142 DGHSRRVLSCAFKPSRPFRIATCGED------F-LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD-----  209 (609)
Q Consensus       142 ~~h~~~v~~~~~~p~~~~~i~t~~~d------~-~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d-----  209 (609)
                      .. . .+..++|+|++ . ++++..+      . ...+|....++.. .+..+ ..+..+  +|||+.|+.++.+     
T Consensus       169 ~~-~-~~~~~~~spdg-~-~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~  240 (347)
T 2gop_A          169 EK-P-RFSSGIWHRDK-I-VVNVPHREIIPQYFKFWDIYIWEDGKEE-KMFEK-VSFYAV--DSDGERILLYGKPEKKYM  240 (347)
T ss_dssp             EE-E-TTCEEEEETTE-E-EEEEECCCSSCCSSCCEEEEEEETTEEE-EEEEE-ESEEEE--EECSSCEEEEECCSSSCC
T ss_pred             cC-C-CcccccCCCCe-E-EEEEecccccccccccccEEEeCCCceE-EeccC-cceeeE--CCCCCEEEEEEccccCCc
Confidence            44 3 77889999999 4 5555433      2 3344432244333 22233 445444  9999998888754     


Q ss_pred             ---CcEEEEeCCCCccccccCcCCCCccceEE-EEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccce
Q 007283          210 ---KKGIIYDGKTADKIGELSPEDGHKGSVYA-VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDM  285 (609)
Q Consensus       210 ---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~-l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  285 (609)
                         ..+.+||  +++.. .+.  .+|...+.. +.|+ |+ ++++++.++.+++| +. .  ++.......  .    ..
T Consensus       241 ~~~~~l~~~d--~~~~~-~l~--~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~-~--g~~~~~~~~--~----~~  303 (347)
T 2gop_A          241 SEHNKLYIYD--GKEVM-GIL--DEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IW-D--GEIKPIAKG--R----HW  303 (347)
T ss_dssp             CSSCEEEEEC--SSCEE-ESS--TTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EE-S--SSEEEEECS--S----SE
T ss_pred             cccceEEEEC--CCceE-ecc--ccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-Ec-C--CceEEEecC--C----Ce
Confidence               3677887  44432 222  356677886 9999 88 89999999999999 86 2  333332221  1    12


Q ss_pred             EEEEEEcCCeEEEEEcCCcE-EEEeCC
Q 007283          286 LVGCLWQNDFLVIVSLGGTI-SIFSAN  311 (609)
Q Consensus       286 ~~~~~~~~~~~~~~~~~g~i-~~~~~~  311 (609)
                      +..+.+++..+++++.++.. .+|.++
T Consensus       304 v~~~~~s~~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          304 IMGFDVDEIVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred             EEeeeeeCcEEEEEcCCCChHHheEeC
Confidence            23344445445555666554 666654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.65  E-value=9e-15  Score=147.55  Aligned_cols=304  Identities=14%  Similarity=0.042  Sum_probs=165.8

Q ss_pred             EEEEEEeeCCCeEEEEecCC--CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 007283          148 VLSCAFKPSRPFRIATCGED--FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE  225 (609)
Q Consensus       148 v~~~~~~p~~~~~i~t~~~d--~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~  225 (609)
                      +..++|+|++..++.+...+  ..+.+|+...++......++......+.|+|||+.|+.++.++.+.+||..+++....
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            66788999998755555443  3677778777665444444433333478999999999999999999999887764322


Q ss_pred             cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEE-----E
Q 007283          226 LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV-----S  300 (609)
Q Consensus       226 ~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  300 (609)
                      ..   .+.+      |+|+|+.|+..+.+....+|.....        +.+               +++.++..     .
T Consensus       118 ~~---~~~~------~~~~g~~l~~~~~~~~~~~~~~~~~--------~sp---------------dg~~~~~~~~~~~~  165 (396)
T 3c5m_A          118 YT---VDEE------WKGYGTWVANSDCTKLVGIEILKRD--------WQP---------------LTSWEKFAEFYHTN  165 (396)
T ss_dssp             EE---CCTT------EEEEEEEEECTTSSEEEEEEEEGGG--------CCC---------------CCSHHHHHHHHHTC
T ss_pred             Ee---cccc------cCCCCCEEEeccCCccccccccccc--------cCC---------------CCcceeeeeeccCC
Confidence            21   1222      5566666666655555555432100        000               00111100     1


Q ss_pred             cCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcE
Q 007283          301 LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEI  380 (609)
Q Consensus       301 ~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (609)
                      .+..+++|++....  ...+..+...+..+.+++.++..++..+.++.-                               
T Consensus       166 ~~~~l~~~d~~~g~--~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~-------------------------------  212 (396)
T 3c5m_A          166 PTCRLIKVDIETGE--LEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHD-------------------------------  212 (396)
T ss_dssp             CCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCSS-------------------------------
T ss_pred             CcceEEEEECCCCc--EEeeccCCcccccceECCCCCCEEEEEecCCCC-------------------------------
Confidence            22334555543221  222233444556666654223333333322110                               


Q ss_pred             EEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCC
Q 007283          381 VTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGS  460 (609)
Q Consensus       381 ~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~  460 (609)
                         .....++.++..+....   .           +...                         .....+..++++|||+
T Consensus       213 ---~~~~~l~~~d~~~~~~~---~-----------l~~~-------------------------~~~~~~~~~~~spdg~  250 (396)
T 3c5m_A          213 ---LVDARMWLVNEDGSNVR---K-----------IKEH-------------------------AEGESCTHEFWIPDGS  250 (396)
T ss_dssp             ---SCSCCCEEEETTSCCCE---E-----------SSCC-------------------------CTTEEEEEEEECTTSS
T ss_pred             ---CCCceEEEEECCCCcee---E-----------eecc-------------------------CCCccccceEECCCCC
Confidence               00012222222111000   0           0000                         0001255678999999


Q ss_pred             EEEEEeCC-----CcEEEEEecCCeeeeeEEEecCCCceEEEEECC-CCCEEEEEe----------------CCCeEEEE
Q 007283          461 EAIIGSQD-----GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSP-DVSMFASGD----------------VNREAIVW  518 (609)
Q Consensus       461 ~l~~gs~d-----g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~-~~~~l~s~s----------------~d~~v~iw  518 (609)
                      .++..+.+     +.|++|++.++.....   ....+ .. +.|+| ||++++.++                .+..+++|
T Consensus       251 ~l~~~~~~~~~~~~~l~~~d~~~g~~~~l---~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~  325 (396)
T 3c5m_A          251 AMAYVSYFKGQTDRVIYKANPETLENEEV---MVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVL  325 (396)
T ss_dssp             CEEEEEEETTTCCEEEEEECTTTCCEEEE---EECCS-EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEE
T ss_pred             EEEEEecCCCCccceEEEEECCCCCeEEe---eeCCC-CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEE
Confidence            88777654     4499999877654321   11222 33 88999 999988765                34789999


Q ss_pred             EccCCceEEeeecCCCC-----------ceEEEEECCCCcEEEEEe-CCCeEEEEEcCC
Q 007283          519 DRVSREVKLKNMLYHTA-----------RINCLAWSPNNSMVATGS-LDTCVIIYEIDK  565 (609)
Q Consensus       519 d~~~~~~~~~~~~~h~~-----------~i~~l~~s~d~~~l~s~s-~D~~v~vw~~~~  565 (609)
                      |+.+++..  .+..+..           .+..++|+|||++|+..+ .++...+|.++.
T Consensus       326 d~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~  382 (396)
T 3c5m_A          326 NTKAKSAQ--KLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADV  382 (396)
T ss_dssp             ETTTTBCC--EEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEEC
T ss_pred             ecccCceE--EccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEE
Confidence            98766532  2333443           256789999999887665 466777776653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=3.5e-13  Score=129.31  Aligned_cols=234  Identities=14%  Similarity=0.185  Sum_probs=162.2

Q ss_pred             CceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccc------cCCCCcEEEEE-CCCCCEEEEEeC-CCcEEEEcCC
Q 007283           17 GRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYG------EHAYPATVARF-SPNGEWIASADV-SGTVRIWGAH   87 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~------~h~~~v~~~~~-sp~g~~las~~~-d~~i~vWd~~   87 (609)
                      ..|..++++|+|+.++.. ..+.|.+|+.. ++....+.      +|...+..+++ .++|+++++... ++.|++||. 
T Consensus        30 ~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~-  107 (286)
T 1q7f_A           30 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  107 (286)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECC-
Confidence            357889999999876664 35789999986 44433342      34456889999 688988887753 889999994 


Q ss_pred             CCceeeEEEee-cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCeeEEEe--cCCccEEEEEEeeCCCeEEEE
Q 007283           88 NDHVLKKEFRV-LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTNVGEFD--GHSRRVLSCAFKPSRPFRIAT  163 (609)
Q Consensus        88 ~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~h~~~v~~~~~~p~~~~~i~t  163 (609)
                      +++.+ ..+.. ....+..++++|+|+.+++...+.   .  ++.|+. +..+..+.  ++...+..++++|++. ++++
T Consensus       108 ~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~---~--i~~~~~~g~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~  180 (286)
T 1q7f_A          108 YGQFV-RKFGATILQHPRGVTVDNKGRIIVVECKVM---R--VIIFDQNGNVLHKFGCSKHLEFPNGVVVNDKQE-IFIS  180 (286)
T ss_dssp             TSCEE-EEECTTTCSCEEEEEECTTSCEEEEETTTT---E--EEEECTTSCEEEEEECTTTCSSEEEEEECSSSE-EEEE
T ss_pred             CCcEE-EEecCccCCCceEEEEeCCCCEEEEECCCC---E--EEEEcCCCCEEEEeCCCCccCCcEEEEECCCCC-EEEE
Confidence            44433 22322 234688999999998666543221   2  444553 34444443  4456789999999986 5777


Q ss_pred             ecCCCeEEEEeCCCCceeeecc--CcccceEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCccccccCcCCCCccceEEEE
Q 007283          164 CGEDFLVNFYEGPPFKFKLSHR--GHSNFVNCVRFSPDGSKFISVSSDK-KGIIYDGKTADKIGELSPEDGHKGSVYAVS  240 (609)
Q Consensus       164 ~~~d~~i~~~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~d~-~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~  240 (609)
                      ...++.|.+|+.. ++....+.  ++...+..++++|+|+++++...++ .|.+|+. +++.+..+... .....+.+++
T Consensus       181 ~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-~~~~~~~~i~  257 (286)
T 1q7f_A          181 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-VKHAQCFDVA  257 (286)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES-SCCSCEEEEE
T ss_pred             ECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc-CCCCcceeEE
Confidence            7778899999864 34443443  3446789999999999888877775 9999995 45544444221 1223478999


Q ss_pred             ECCCCCeEEEEeCCCcEEEeecc
Q 007283          241 WSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       241 ~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ++|+|+++++ +.|++|++|++.
T Consensus       258 ~~~~g~l~vs-~~~~~v~v~~~~  279 (286)
T 1q7f_A          258 LMDDGSVVLA-SKDYRLYIYRYV  279 (286)
T ss_dssp             EETTTEEEEE-ETTTEEEEEECS
T ss_pred             ECCCCcEEEE-CCCCeEEEEEcc
Confidence            9999987777 579999999975

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.63  E-value=9.7e-13  Score=126.19  Aligned_cols=151  Identities=12%  Similarity=0.171  Sum_probs=109.6

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN  529 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~  529 (609)
                      +..++++|+|+.+++...++.|++|+...... .......+...+..++++|+|.++++...++.|++||.....  +..
T Consensus       123 ~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~-~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~--~~~  199 (286)
T 1q7f_A          123 PRGVTVDNKGRIIVVECKVMRVIIFDQNGNVL-HKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQY--LRQ  199 (286)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTSCEE-EEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCE--EEE
T ss_pred             ceEEEEeCCCCEEEEECCCCEEEEEcCCCCEE-EEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCE--EEE
Confidence            56788999999888888889999999654322 111112455678999999999999988889999999975432  222


Q ss_pred             ec--CCCCceEEEEECCCCcEEEEEeCCC-eEEEEEcCCCCCcceeEeccc--cCCeEEEEEc-CCCeEEEEeCCCcEEE
Q 007283          530 ML--YHTARINCLAWSPNNSMVATGSLDT-CVIIYEIDKPASSRMTIKGAH--LGGVYGLAFT-DEHSVVSSGEDACVRV  603 (609)
Q Consensus       530 ~~--~h~~~i~~l~~s~d~~~l~s~s~D~-~v~vw~~~~~~~~~~~~~~~h--~~~v~~~~~s-~~~~l~s~s~D~~i~~  603 (609)
                      +.  ++...+..++++|+|+++++...++ .|.+|+.+. . . +.....+  ...+.+++++ +++.+++ +.|++|++
T Consensus       200 ~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g-~-~-~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v  275 (286)
T 1q7f_A          200 IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDG-Q-L-ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYI  275 (286)
T ss_dssp             ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTS-C-E-EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEE
T ss_pred             EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC-C-E-EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEE
Confidence            32  2336789999999999998888886 999999542 2 2 2222223  2347899999 5565666 67999999


Q ss_pred             EEcc
Q 007283          604 WRLT  607 (609)
Q Consensus       604 W~~~  607 (609)
                      |++.
T Consensus       276 ~~~~  279 (286)
T 1q7f_A          276 YRYV  279 (286)
T ss_dssp             EECS
T ss_pred             EEcc
Confidence            9985

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.62  E-value=8.6e-14  Score=137.67  Aligned_cols=225  Identities=8%  Similarity=0.085  Sum_probs=152.6

Q ss_pred             ceeEEeecCCCCeEEEeCC------CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC-------------
Q 007283           18 RGILISGHPKSNSILYTNG------RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS-------------   78 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~------~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d-------------   78 (609)
                      ....+.++|||+.|++...      ..+.++++.+++.......+ . +..++|+|||+.|+.++.+             
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            3456899999999988642      24788898877665444433 3 9999999999999877632             


Q ss_pred             --------------CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCc---c-eEEEEEcCCCCeeEE
Q 007283           79 --------------GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK---S-LVRAFMWDSGTNVGE  140 (609)
Q Consensus        79 --------------~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~---~-~~~~~~~~~~~~~~~  140 (609)
                                    ..|.+||+.+++.. ..+.. . .+..++|+||| .+++...+...   . ..++|.++ ......
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~-~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~  212 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVI-EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEK  212 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEE-EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEE-eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeC-CCceEE
Confidence                          46888998876541 23333 3 78899999999 55555432210   1 34677777 444444


Q ss_pred             EecCCccEEEEEEeeCCCeEEEEecC-------CCeEEEEeCCCCceeeeccCcccceEE-EEEcCCCCEEEEEeCCCcE
Q 007283          141 FDGHSRRVLSCAFKPSRPFRIATCGE-------DFLVNFYEGPPFKFKLSHRGHSNFVNC-VRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       141 ~~~h~~~v~~~~~~p~~~~~i~t~~~-------d~~i~~~~~~~~~~~~~~~~h~~~v~~-l~~s~dg~~l~s~~~d~~i  212 (609)
                      +..+ ..+..+  +|++..++..+..       ...+.+|+  .++......+|...+.. +.|+ || ++++++.++.+
T Consensus       213 l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~  285 (347)
T 2gop_A          213 MFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSV  285 (347)
T ss_dssp             EEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEE
T ss_pred             eccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcE
Confidence            4444 455544  9999864444432       24677777  45554455566777886 9999 88 88999999999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE-EEeecc
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA-KVWDIS  263 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i-~iwd~~  263 (609)
                      .|| ..+++.. .+.   .+.+.|.+++|+|  .++++++.+++. ++|.+.
T Consensus       286 ~l~-~~~g~~~-~~~---~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          286 NLY-IWDGEIK-PIA---KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EEE-EESSSEE-EEE---CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EEE-EcCCceE-EEe---cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            999 7655432 221   3467899999999  677777777665 777764

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.62  E-value=4.1e-13  Score=131.60  Aligned_cols=245  Identities=14%  Similarity=0.162  Sum_probs=162.4

Q ss_pred             CCcEEEEECCCCCEEEEEeCC------------------------CcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283           58 YPATVARFSPNGEWIASADVS------------------------GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL  113 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~d------------------------~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~  113 (609)
                      +.+..++++|+|+++++.+.+                        ++|.+||..+++.....-..+-.....++++|+|+
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            569999999999999988877                        47999999877754321112334688999999998


Q ss_pred             EEEEEECCCCcceEEEEEcCCCC-eeEEE---------ecCCccEEEEEEee-CCCeEEEEec-CCCeEEEEeCCCCcee
Q 007283          114 RIVACGDGKGKSLVRAFMWDSGT-NVGEF---------DGHSRRVLSCAFKP-SRPFRIATCG-EDFLVNFYEGPPFKFK  181 (609)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~---------~~h~~~v~~~~~~p-~~~~~i~t~~-~d~~i~~~~~~~~~~~  181 (609)
                      .+++-. +.  ..++.++.+... .+..+         .++......++++| ++. ++++.+ .++.|..|+ ..++..
T Consensus       104 l~v~d~-~~--~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~-lyv~d~~~~~~I~~~~-~~g~~~  178 (329)
T 3fvz_A          104 YWVTDV-AL--HQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGA-VFVSDGYCNSRIVQFS-PSGKFV  178 (329)
T ss_dssp             EEEEET-TT--TEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCC-EEEEECSSCCEEEEEC-TTSCEE
T ss_pred             EEEEEC-CC--CEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCe-EEEEeCCCCCeEEEEc-CCCCEE
Confidence            555532 22  234444433221 34445         34455789999999 555 566665 688999998 445555


Q ss_pred             eecc----------CcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECC------C
Q 007283          182 LSHR----------GHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP------D  244 (609)
Q Consensus       182 ~~~~----------~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp------d  244 (609)
                      ..+.          ++......++++|+ |.++++...++.|.+|+..+++.+..+.. ..+...+.+++|+|      +
T Consensus       179 ~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~-~~~~~~~~~~~~~pg~~~~~~  257 (329)
T 3fvz_A          179 TQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKH-ASFGRNVFAISYIPGFLFAVN  257 (329)
T ss_dssp             EEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECC-TTTTTCEEEEEEETTEEEEEE
T ss_pred             EEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEec-cccCCCcceeeecCCEEEEeC
Confidence            4442          23445889999999 77777777889999999988887766532 24667789999999      3


Q ss_pred             CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCC
Q 007283          245 GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHM  324 (609)
Q Consensus       245 ~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~  324 (609)
                      |+..++.+.+.+|++|++..   ++....+..                                           ..++.
T Consensus       258 g~~~v~~~~~~~v~~~~~~~---g~~~~~~~~-------------------------------------------~~~~~  291 (329)
T 3fvz_A          258 GKPYFGDQEPVQGFVMNFSS---GEIIDVFKP-------------------------------------------VRKHF  291 (329)
T ss_dssp             CCCCTTCSCCCCEEEEETTT---CCEEEEECC-------------------------------------------SSSCC
T ss_pred             CCEEeccCCCcEEEEEEcCC---CeEEEEEcC-------------------------------------------CCCcc
Confidence            33333333345777777642   333222210                                           01344


Q ss_pred             CCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          325 KNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       325 ~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                      ..+..+++.+ ++.++++...++.|++|+..
T Consensus       292 ~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~  321 (329)
T 3fvz_A          292 DMPHDIVASE-DGTVYIGDAHTNTVWKFTLT  321 (329)
T ss_dssp             SSEEEEEECT-TSEEEEEESSSCCEEEEEEE
T ss_pred             CCeeEEEECC-CCCEEEEECCCCEEEEEeCC
Confidence            5566777754 44788888889999999654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.57  E-value=5.8e-12  Score=124.87  Aligned_cols=147  Identities=14%  Similarity=0.130  Sum_probs=102.2

Q ss_pred             CCCEEEEEECCCC---cceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEec---------CCCeEEEEeCCCC
Q 007283          111 DGLRIVACGDGKG---KSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCG---------EDFLVNFYEGPPF  178 (609)
Q Consensus       111 dg~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~---------~d~~i~~~~~~~~  178 (609)
                      |++++.++..+.+   ...+.+++.++++.+..+..+..+  .++|+|++.+.+++..         .++.+.+||..+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            5666665543211   124556666677777777766555  8999999997555432         3677999998877


Q ss_pred             ceeeeccC------cccceEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCccccc-cCcCCCCccceEEEEECCCC-CeE
Q 007283          179 KFKLSHRG------HSNFVNCVRFSPDGSKFISVSS--DKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWSPDG-KQV  248 (609)
Q Consensus       179 ~~~~~~~~------h~~~v~~l~~s~dg~~l~s~~~--d~~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~spd~-~~l  248 (609)
                      +....+.-      +......++|+|||++|+++..  ++.|.+||..+++.+.. +..    . ....+.+.|++ ..+
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~----~-~~~~v~~~p~~~~~~  166 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA----A-GCWSVIPQPNRPRSF  166 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG----T-TEEEEEECTTSSSEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC----C-CcceeEEcCCCCeeE
Confidence            76655431      2244667899999999988863  67899999999887766 531    1 22335677876 677


Q ss_pred             EEEeCCCcEEEeeccc
Q 007283          249 LTASADKSAKVWDISE  264 (609)
Q Consensus       249 ~s~s~d~~i~iwd~~~  264 (609)
                      ++.+.||++.+|+...
T Consensus       167 ~~~~~dg~~~~v~~~~  182 (361)
T 2oiz_A          167 MTICGDGGLLTINLGE  182 (361)
T ss_dssp             EEEETTSSEEEEEECT
T ss_pred             EEECCCCcEEEEEECC
Confidence            8888999999998753

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=1.2e-12  Score=126.24  Aligned_cols=234  Identities=10%  Similarity=0.033  Sum_probs=162.6

Q ss_pred             ceeEEeecCCCCeEEEe--CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEE
Q 007283           18 RGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE   95 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~   95 (609)
                      .+-.+.++|+|+.|++.  .++.+..|+..++  ...+..+...+.+++++|+|+++++...++.|.+||..+++.... 
T Consensus        29 ~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~-  105 (296)
T 3e5z_A           29 WTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESI-  105 (296)
T ss_dssp             SEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEE-
T ss_pred             cccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEE-
Confidence            34478899999844443  3578999999876  445666777899999999999998888889999999877653221 


Q ss_pred             Eeec----ccceeEEEECCCCCEEEEEEC-C-----------CCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCe
Q 007283           96 FRVL----SGRIDDLQWSPDGLRIVACGD-G-----------KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPF  159 (609)
Q Consensus        96 ~~~~----~~~v~~~~~spdg~~l~~~~~-~-----------~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~  159 (609)
                      ....    ...+..++++|||+.+++-.. +           .......++.++....+..+..+......++|+|++..
T Consensus       106 ~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~  185 (296)
T 3e5z_A          106 ADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNL  185 (296)
T ss_dssp             ECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCE
T ss_pred             eeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCE
Confidence            1111    124678999999987775320 0           00001246667654445555666777889999999987


Q ss_pred             EEEEecCCCeEEEEeCC-CCce---eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccc
Q 007283          160 RIATCGEDFLVNFYEGP-PFKF---KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS  235 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~-~~~~---~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  235 (609)
                      + ++...++.+..|+.. .++.   ...+..+...+..++++++|+++++.  ++.|.+|+.. ++.+..+.   .+.. 
T Consensus       186 l-v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~~~~~---~~~~-  257 (296)
T 3e5z_A          186 L-VSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDELGRVL---TPQT-  257 (296)
T ss_dssp             E-EEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEEEEEE---CSSC-
T ss_pred             E-EEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEEEEEE---CCCC-
Confidence            5 777888899999865 3443   22233345566789999999866655  8899999986 56555443   3445 


Q ss_pred             eEEEEE-CCCCCeEEEEeCCCcEEEeecc
Q 007283          236 VYAVSW-SPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       236 V~~l~~-spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +.+++| +|+++.|+.++.++ +.-+++.
T Consensus       258 ~~~~~f~~~d~~~L~v~t~~~-l~~~~~~  285 (296)
T 3e5z_A          258 TSNLCFGGPEGRTLYMTVSTE-FWSIETN  285 (296)
T ss_dssp             CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred             ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence            889999 68999888888663 4344443

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.56  E-value=1.2e-12  Score=142.50  Aligned_cols=241  Identities=8%  Similarity=-0.056  Sum_probs=163.0

Q ss_pred             eeEEeecCCCCeEEEeC---CC---EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCc------------
Q 007283           19 GILISGHPKSNSILYTN---GR---SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGT------------   80 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~---~~---~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~------------   80 (609)
                      ...++++|||+.|+|..   |.   .+.++|+.+++.......+ ..+..++|+|||+.|+.++.++.            
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            44788999999999863   33   8999999988765432222 23678999999999998887766            


Q ss_pred             ----EEEEcCCCCcee-eEEEee--cccceeEEEECCCCCEEEEEECCCC--cceEEEEEcCC------CC-eeEEEecC
Q 007283           81 ----VRIWGAHNDHVL-KKEFRV--LSGRIDDLQWSPDGLRIVACGDGKG--KSLVRAFMWDS------GT-NVGEFDGH  144 (609)
Q Consensus        81 ----i~vWd~~~~~~~-~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~--~~~~~~~~~~~------~~-~~~~~~~h  144 (609)
                          |++|++.+++.. ...+..  +...+..++|||||++|+.......  ...+.+++.+.      +. ....+..+
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence                999999876521 112222  3345788999999999988764221  23455555544      32 35566666


Q ss_pred             CccEEEEEEeeCCCeEEEEecCC---CeEEEEeCCCCce--eeeccCccc--ceEEEEEcCCCCEEEEEeCCCc--EEEE
Q 007283          145 SRRVLSCAFKPSRPFRIATCGED---FLVNFYEGPPFKF--KLSHRGHSN--FVNCVRFSPDGSKFISVSSDKK--GIIY  215 (609)
Q Consensus       145 ~~~v~~~~~~p~~~~~i~t~~~d---~~i~~~~~~~~~~--~~~~~~h~~--~v~~l~~s~dg~~l~s~~~d~~--i~iw  215 (609)
                      ...+.. .|+|++..++..+..+   ..+..|+...+..  ...+..|..  .+..+.|++++.++++...|+.  +.+|
T Consensus       286 ~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~  364 (710)
T 2xdw_A          286 FEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (710)
T ss_dssp             SSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             CCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEE
Confidence            666554 5888888655555433   4688888765431  123333433  6888999988778888888885  4556


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCCCeEEEE-e---CCCcEEEeeccc
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA-S---ADKSAKVWDISE  264 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~-s---~d~~i~iwd~~~  264 (609)
                      +..+++.+..+.   .+.+.|..+.++|++..++.. +   ..++++.||+..
T Consensus       365 ~~~~g~~~~~l~---~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  414 (710)
T 2xdw_A          365 DLATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (710)
T ss_dssp             ETTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             ECCCCCEEEecC---CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence            766666555543   356778999999998765533 2   347899999864

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.55  E-value=2.7e-12  Score=139.72  Aligned_cols=230  Identities=10%  Similarity=0.029  Sum_probs=144.8

Q ss_pred             CCCCeEEEeC---C-C--EEEEEeCCCCccccc------cccCCCCcEEEEECCCCCEEEEEeCC-C----cEEEEcCCC
Q 007283           26 PKSNSILYTN---G-R--SVIILDLSNPLQVSI------YGEHAYPATVARFSPNGEWIASADVS-G----TVRIWGAHN   88 (609)
Q Consensus        26 ~~~~~l~~~~---~-~--~~~i~~~~~~~~~~~------~~~h~~~v~~~~~sp~g~~las~~~d-~----~i~vWd~~~   88 (609)
                      |+|..++|..   + .  .+.+.+..++.....      -.+|...+..++|||||++||.++.+ |    +|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            6777776652   2 1  344445444433211      12455568899999999999965543 2    899999998


Q ss_pred             CceeeEEEeecccceeEEEECCCCCEEEEEECCCC-------------cceEEEEEcCCCCe--eEEEe--cCCccEEEE
Q 007283           89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKG-------------KSLVRAFMWDSGTN--VGEFD--GHSRRVLSC  151 (609)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~-------------~~~~~~~~~~~~~~--~~~~~--~h~~~v~~~  151 (609)
                      ++.....+  ....+..++|||||+.|+.+.....             ...+.++...++..  ...+.  .|...+..+
T Consensus       161 g~~~~~~~--~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~  238 (710)
T 2xdw_A          161 AKELPDVL--ERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGA  238 (710)
T ss_dssp             TEEEEEEE--EEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             CCCCcccc--cCcccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEE
Confidence            87543222  2223678999999999998875543             11233444434331  22233  345668899


Q ss_pred             EEeeCCCeEEEEecC----CCeEEEEeCCC------Cc-eeeeccCcccceEEEEEcCCCCEEEEEeCC----CcEEEEe
Q 007283          152 AFKPSRPFRIATCGE----DFLVNFYEGPP------FK-FKLSHRGHSNFVNCVRFSPDGSKFISVSSD----KKGIIYD  216 (609)
Q Consensus       152 ~~~p~~~~~i~t~~~----d~~i~~~~~~~------~~-~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d----~~i~iwd  216 (609)
                      .|+|++..++.+...    +..+.+|+...      +. ....+..+...+.. .|+|+|+.|+..+..    ..+.+||
T Consensus       239 ~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d  317 (710)
T 2xdw_A          239 ELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINID  317 (710)
T ss_dssp             EECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEe
Confidence            999999975554431    56788888754      32 23334455555544 488999988777653    3589999


Q ss_pred             CCCCcc--ccccCcCCCCc--cceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          217 GKTADK--IGELSPEDGHK--GSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       217 ~~~~~~--~~~~~~~~~h~--~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      ..++..  ...+.   .|.  ..+..+.|++++.++++...|+..++|-
T Consensus       318 ~~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~  363 (710)
T 2xdw_A          318 FTDPEESKWKVLV---PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQL  363 (710)
T ss_dssp             TTSCCGGGCEEEE---CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEE
T ss_pred             CCCCCcccceecc---CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEE
Confidence            877642  23332   232  3688899998888888888888655543

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.54  E-value=3.9e-12  Score=120.76  Aligned_cols=235  Identities=10%  Similarity=-0.032  Sum_probs=158.7

Q ss_pred             ceeEEeecCCCCeEE-E-eCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEE
Q 007283           18 RGILISGHPKSNSIL-Y-TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE   95 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~-~-~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~   95 (609)
                      .|..+..+|+|+.++ . ..++.+.+|+..+.........+...+..++++|+|+++++.. ++.|.+||.......  .
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~--~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQT--V  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCE--E
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEe--e
Confidence            778999999998555 4 2357888998766554332233345688999999999777766 889999998764321  2


Q ss_pred             Eee-cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE--ecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           96 FRV-LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF--DGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        96 ~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      +.. ....+..++++|+|+.+++...+.     +++.++.+......  ......+..++++|++. ++++...++.+..
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~-----~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~  175 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNN-----RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN-VYVTDTDNNRVVK  175 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGT-----EEEEECTTCCSCEECCCCSCCSCCCEEECTTCC-EEEEEGGGTEEEE
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCC-----EEEEEECCCceeEeeccccCCCceeEEEeCCCC-EEEEECCCCEEEE
Confidence            221 224688999999998666543221     23344544322222  22234577899999887 4666666778999


Q ss_pred             EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       173 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      |+............+...+..++++++|.++++...++.|.+|+........ ..  ..+-..+.+++++|+|+++++.+
T Consensus       176 ~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~--~~~~~~p~~i~~~~~g~l~v~~~  252 (270)
T 1rwi_B          176 LEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP--FTGLNTPLAVAVDSDRTVYVADR  252 (270)
T ss_dssp             ECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC--CCSCSCEEEEEECTTCCEEEEEG
T ss_pred             EecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec--cCCCCCceeEEECCCCCEEEEEC
Confidence            9876654443333444678899999999877777778899999976544322 11  12335689999999999888989


Q ss_pred             CCCcEEEeeccc
Q 007283          253 ADKSAKVWDISE  264 (609)
Q Consensus       253 ~d~~i~iwd~~~  264 (609)
                      .+++|+++++..
T Consensus       253 ~~~~v~~~~~~~  264 (270)
T 1rwi_B          253 GNDRVVKLTSLE  264 (270)
T ss_dssp             GGTEEEEECCCG
T ss_pred             CCCEEEEEcCCC
Confidence            999999999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.52  E-value=2e-11  Score=119.89  Aligned_cols=235  Identities=11%  Similarity=0.057  Sum_probs=157.3

Q ss_pred             ceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC----CcEEEEcCCCCcee
Q 007283           18 RGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS----GTVRIWGAHNDHVL   92 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d----~~i~vWd~~~~~~~   92 (609)
                      .+..+.++|+|+.++.. .++.+.+||..+++.......+...+.+++++|+|+++++...+    +.|.+||..+++..
T Consensus        46 ~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~  125 (333)
T 2dg1_A           46 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQ  125 (333)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCE
T ss_pred             cccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEE
Confidence            45577889999865544 45789999998776554443566789999999999998887766    68999998776532


Q ss_pred             eEEEe--ecccceeEEEECCCCCEEEEEECCC-CcceEEEEEcCCCC-eeEEEecCCccEEEEEEeeCCCeEEEEecCCC
Q 007283           93 KKEFR--VLSGRIDDLQWSPDGLRIVACGDGK-GKSLVRAFMWDSGT-NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF  168 (609)
Q Consensus        93 ~~~~~--~~~~~v~~~~~spdg~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~  168 (609)
                       ..+.  .....+..++++|+|+.+++...+. ......++.++... ....+..+...+..++|+|++..++++...++
T Consensus       126 -~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~  204 (333)
T 2dg1_A          126 -DIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTAN  204 (333)
T ss_dssp             -EEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGT
T ss_pred             -EEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCC
Confidence             1122  1234688999999998777654210 01123566666432 23333333445788999999986566666778


Q ss_pred             eEEEEeCCC-Ccee--------eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC---CCCccce
Q 007283          169 LVNFYEGPP-FKFK--------LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE---DGHKGSV  236 (609)
Q Consensus       169 ~i~~~~~~~-~~~~--------~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~h~~~V  236 (609)
                      .+.+|+... ++..        ..+.++ ..+..++++++|+++++...++.|.+||. .++.+..+...   .+|...+
T Consensus       205 ~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~  282 (333)
T 2dg1_A          205 RLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRS  282 (333)
T ss_dssp             EEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBC
T ss_pred             eEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCc
Confidence            899998642 2211        112233 45788999999998887778899999998 45544444211   1222368


Q ss_pred             EEEEECCCCCeEEEEeCCC
Q 007283          237 YAVSWSPDGKQVLTASADK  255 (609)
Q Consensus       237 ~~l~~spd~~~l~s~s~d~  255 (609)
                      .+++|+||+..|+.++.++
T Consensus       283 ~~~~~~~dg~~L~v~~~~g  301 (333)
T 2dg1_A          283 THPQFIPGTNQLIICSNDI  301 (333)
T ss_dssp             CEEEECTTSCEEEEEEECG
T ss_pred             ceEEECCCCCEEEEEeCcc
Confidence            8999999987776555543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.52  E-value=2.1e-11  Score=117.54  Aligned_cols=253  Identities=13%  Similarity=0.063  Sum_probs=161.2

Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~  219 (609)
                      .+..+.....+++|+|++..+++++..++.|..|+....  ...+..+...+.+++++|+|+++++...++.+.+||..+
T Consensus        22 ~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~   99 (296)
T 3e5z_A           22 RLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPG   99 (296)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTT
T ss_pred             EEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCC
Confidence            344555667899999999866888888899999997765  444555677799999999999877776778999999877


Q ss_pred             CccccccCcCCC-CccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEE
Q 007283          220 ADKIGELSPEDG-HKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI  298 (609)
Q Consensus       220 ~~~~~~~~~~~~-h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (609)
                      ++.........+ ....+..++++|+|+++++.+..+++..++..   ..     .  ...                   
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~---~~-----~--~~~-------------------  150 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY---GG-----E--MEL-------------------  150 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS---CC-----C--CCS-------------------
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccc---cc-----c--ccC-------------------
Confidence            764322211111 12346789999999888875432321111000   00     0  000                   


Q ss_pred             EEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCC
Q 007283          299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE  378 (609)
Q Consensus       299 ~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (609)
                        ..+  .+|.++                       .          ++.+...                          
T Consensus       151 --~~~--~l~~~~-----------------------~----------~g~~~~~--------------------------  167 (296)
T 3e5z_A          151 --PGR--WVFRLA-----------------------P----------DGTLSAP--------------------------  167 (296)
T ss_dssp             --SSC--EEEEEC-----------------------T----------TSCEEEE--------------------------
T ss_pred             --CCc--EEEEEC-----------------------C----------CCCEEEe--------------------------
Confidence              000  000000                       0          0000000                          


Q ss_pred             cEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC
Q 007283          379 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD  458 (609)
Q Consensus       379 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  458 (609)
                                                                                       .........++++||
T Consensus       168 -----------------------------------------------------------------~~~~~~~~gi~~s~d  182 (296)
T 3e5z_A          168 -----------------------------------------------------------------IRDRVKPNGLAFLPS  182 (296)
T ss_dssp             -----------------------------------------------------------------ECCCSSEEEEEECTT
T ss_pred             -----------------------------------------------------------------ecCCCCCccEEECCC
Confidence                                                                             000012456788999


Q ss_pred             CCEEEEEeCCCcEEEEEec-CCee-eeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc
Q 007283          459 GSEAIIGSQDGKLRVYSIR-GDTL-TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR  536 (609)
Q Consensus       459 g~~l~~gs~dg~i~iw~~~-~~~~-~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~  536 (609)
                      |+.+++.+.++.|++|++. .+.+ .....+..+.+.+..++++++|.+.++.  ++.|.+||.... . +..+..+.. 
T Consensus       183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~g~-~-~~~~~~~~~-  257 (296)
T 3e5z_A          183 GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPDGD-E-LGRVLTPQT-  257 (296)
T ss_dssp             SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTTSC-E-EEEEECSSC-
T ss_pred             CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCCCC-E-EEEEECCCC-
Confidence            9988777888999999986 4444 2223334456677889999999987776  789999997633 2 333445666 


Q ss_pred             eEEEEE-CCCCcEEEEEeCCC
Q 007283          537 INCLAW-SPNNSMVATGSLDT  556 (609)
Q Consensus       537 i~~l~~-s~d~~~l~s~s~D~  556 (609)
                      +++++| +||++.|+.++.++
T Consensus       258 ~~~~~f~~~d~~~L~v~t~~~  278 (296)
T 3e5z_A          258 TSNLCFGGPEGRTLYMTVSTE  278 (296)
T ss_dssp             CCEEEEESTTSCEEEEEETTE
T ss_pred             ceeEEEECCCCCEEEEEcCCe
Confidence            999999 68999898888874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.49  E-value=2.8e-12  Score=139.23  Aligned_cols=239  Identities=8%  Similarity=-0.069  Sum_probs=159.3

Q ss_pred             ceeEEeecCCCCeEEEe---CC---CEEEEEeCCCCccccccccCCCCc--EEEEECCCCCEEEEEeCCCc---------
Q 007283           18 RGILISGHPKSNSILYT---NG---RSVIILDLSNPLQVSIYGEHAYPA--TVARFSPNGEWIASADVSGT---------   80 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~---~~---~~~~i~~~~~~~~~~~~~~h~~~v--~~~~~sp~g~~las~~~d~~---------   80 (609)
                      ....++++|||+.|+|.   .|   ..+++||+.+++.+.  ..+-..+  ..++|+|||+.|+.++.|.+         
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~  199 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERP  199 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCccccCC
Confidence            34578899999999976   33   489999999887641  1122222  67899999999999988776         


Q ss_pred             ----EEEEcCCCCce---eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-CeeEEEecCCccEEEEE
Q 007283           81 ----VRIWGAHNDHV---LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-TNVGEFDGHSRRVLSCA  152 (609)
Q Consensus        81 ----i~vWd~~~~~~---~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~h~~~v~~~~  152 (609)
                          |++|++.++..   +......+...+..++|||||++|+....... ....+|.++.. .....+..+...+....
T Consensus       200 ~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~~l~~~~~~~~~~~  278 (695)
T 2bkl_A          200 GYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFRLLVKGVGAKYEVH  278 (695)
T ss_dssp             GGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCEEEEECSSCCEEEE
T ss_pred             CCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceEEeecCCCceEEEE
Confidence                99999987652   22222223456889999999999887764331 13356666642 23455556665666666


Q ss_pred             EeeCCCeEEEEec---CCCeEEEEeCCCCce---eeeccCc-ccceEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcccc
Q 007283          153 FKPSRPFRIATCG---EDFLVNFYEGPPFKF---KLSHRGH-SNFVNCVRFSPDGSKFISVSSDKKGIIYDGK-TADKIG  224 (609)
Q Consensus       153 ~~p~~~~~i~t~~---~d~~i~~~~~~~~~~---~~~~~~h-~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~-~~~~~~  224 (609)
                      + |++. +++...   .++.+..|+...++.   ...+..+ ...+..++|+ ++.++++...|+..+||... .++...
T Consensus       279 ~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  355 (695)
T 2bkl_A          279 A-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVR  355 (695)
T ss_dssp             E-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEE
T ss_pred             e-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeE
Confidence            6 6666 555554   357888998765442   2223333 4568888888 66788888899988887543 344333


Q ss_pred             ccCcCCCCccceEEEEECCCCCeEEEE----eCCCcEEEeeccc
Q 007283          225 ELSPEDGHKGSVYAVSWSPDGKQVLTA----SADKSAKVWDISE  264 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd~~~l~s~----s~d~~i~iwd~~~  264 (609)
                      .+.  ....+.|..++++|++..++..    ...++|++||+..
T Consensus       356 ~l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~  397 (695)
T 2bkl_A          356 TVQ--LPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVST  397 (695)
T ss_dssp             ECC--CSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTT
T ss_pred             Eec--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            332  1225678888999999866632    2347899999864

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.49  E-value=1.9e-11  Score=119.97  Aligned_cols=272  Identities=10%  Similarity=0.070  Sum_probs=162.3

Q ss_pred             cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283          147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       147 ~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      .|.+++|+|+... ++..+.+..++.|..   +....+.++...+.+++|+|+|++++++..++.|.+||..+++.....
T Consensus         7 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~   82 (333)
T 2dg1_A            7 DLPTLFYSGKSNS-AVPIISESELQTITA---EPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPF   82 (333)
T ss_dssp             CCCBCCSCGGGGC-SSCCCCGGGSCEEEC---EEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEE
T ss_pred             ccceeeecCCccc-eeEEeecccCccccc---ceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEe
Confidence            4566777777653 444466666677732   233344556667899999999998788888999999998877643322


Q ss_pred             CcCCCCccceEEEEECCCCCeEEEEeCC----CcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcC
Q 007283          227 SPEDGHKGSVYAVSWSPDGKQVLTASAD----KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG  302 (609)
Q Consensus       227 ~~~~~h~~~V~~l~~spd~~~l~s~s~d----~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (609)
                      .   .+...+.+++++|+|+++++...+    +.|.+||...   ++....+...                         
T Consensus        83 ~---~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~---~~~~~~~~~~-------------------------  131 (333)
T 2dg1_A           83 V---SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG---DNLQDIIEDL-------------------------  131 (333)
T ss_dssp             E---CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS---CSCEEEECSS-------------------------
T ss_pred             e---CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCC---CEEEEEEccC-------------------------
Confidence            1   245679999999999988887666    6888888752   1111111000                         


Q ss_pred             CcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecC----CcEEEEecCccccceeccccccceeEeeeeCC
Q 007283          303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYD----GLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE  378 (609)
Q Consensus       303 g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~d----g~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (609)
                                         .+...+..+++.+ ++.++++...+    +...+|                          
T Consensus       132 -------------------~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~l~--------------------------  165 (333)
T 2dg1_A          132 -------------------STAYCIDDMVFDS-KGGFYFTDFRGYSTNPLGGVY--------------------------  165 (333)
T ss_dssp             -------------------SSCCCEEEEEECT-TSCEEEEECCCBTTBCCEEEE--------------------------
T ss_pred             -------------------ccCCcccceEECC-CCCEEEEeccccccCCCceEE--------------------------
Confidence                               0112344555543 33444443321    112222                          


Q ss_pred             cEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCC
Q 007283          379 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPD  458 (609)
Q Consensus       379 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~  458 (609)
                                  .++..+..                        ....                 .........++++||
T Consensus       166 ------------~~~~~~~~------------------------~~~~-----------------~~~~~~~~~i~~~~d  192 (333)
T 2dg1_A          166 ------------YVSPDFRT------------------------VTPI-----------------IQNISVANGIALSTD  192 (333)
T ss_dssp             ------------EECTTSCC------------------------EEEE-----------------EEEESSEEEEEECTT
T ss_pred             ------------EEeCCCCE------------------------EEEe-----------------ecCCCcccceEECCC
Confidence                        21111000                        0000                 000012566789999


Q ss_pred             CCEE-EEEeCCCcEEEEEecC-C-eeee--eEE---EecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeee
Q 007283          459 GSEA-IIGSQDGKLRVYSIRG-D-TLTE--EAV---LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM  530 (609)
Q Consensus       459 g~~l-~~gs~dg~i~iw~~~~-~-~~~~--~~~---~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  530 (609)
                      |+.+ ++.+.++.|++|++.. + .+..  ...   +.++ ..+..++++++|.+.++...++.|.+||.... . +..+
T Consensus       193 g~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~g~-~-~~~~  269 (333)
T 2dg1_A          193 EKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGY-P-IGQI  269 (333)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTTSC-E-EEEE
T ss_pred             CCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCCCC-E-EEEE
Confidence            9865 4555688999999853 2 2211  011   1122 46788999999999988888899999997433 2 2222


Q ss_pred             cCCC------CceEEEEECCCCcEEEEEeCC
Q 007283          531 LYHT------ARINCLAWSPNNSMVATGSLD  555 (609)
Q Consensus       531 ~~h~------~~i~~l~~s~d~~~l~s~s~D  555 (609)
                      ..+.      ..+.+++|+||++.|+.++.+
T Consensus       270 ~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          270 LIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             ECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            2232      268999999998777655554

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.48  E-value=3.1e-10  Score=118.37  Aligned_cols=313  Identities=13%  Similarity=0.118  Sum_probs=197.6

Q ss_pred             CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCC--CCceeeEEEeecccceeEEEEC----
Q 007283           36 GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAH--NDHVLKKEFRVLSGRIDDLQWS----  109 (609)
Q Consensus        36 ~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~--~~~~~~~~~~~~~~~v~~~~~s----  109 (609)
                      ++.+.++|..+++.+..+... ..+..++|||||+++..++.|+.|.+||+.  +.+.. .++... .....++||    
T Consensus       176 ~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v-~~i~~G-~~P~~ia~s~~~~  252 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTV-AEIKIG-SEARSIETSKMEG  252 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEE-EEEECC-SEEEEEEECCSTT
T ss_pred             CCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEe-EEEecC-CCCceeEEccccC
Confidence            479999999998877665432 346689999999999999999999999995  55443 334432 246789999    


Q ss_pred             CCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec----------CC-ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC
Q 007283          110 PDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG----------HS-RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF  178 (609)
Q Consensus       110 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------h~-~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~  178 (609)
                      |||++++++.....  .+.+++-.+.+.+..+.-          |. ..+..+.++++++..+++....+.+.+.|....
T Consensus       253 pDGk~l~v~n~~~~--~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~  330 (567)
T 1qks_A          253 WEDKYAIAGAYWPP--QYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL  330 (567)
T ss_dssp             CTTTEEEEEEEETT--EEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCS
T ss_pred             CCCCEEEEEEccCC--eEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCC
Confidence            79999998764432  355666666666665531          22 267888889988877777777888888887654


Q ss_pred             cee-eeccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCc--CCCCccceEEEEECCCCC-eEEEEe-
Q 007283          179 KFK-LSHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSP--EDGHKGSVYAVSWSPDGK-QVLTAS-  252 (609)
Q Consensus       179 ~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~--~~~h~~~V~~l~~spd~~-~l~s~s-  252 (609)
                      +.. ............+.|+|+|++++++. .++.|.++|..+++.+..+..  ...|.+.-..+ ++|++. .+++.. 
T Consensus       331 ~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~  409 (567)
T 1qks_A          331 NNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHM  409 (567)
T ss_dssp             SEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBS
T ss_pred             ccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCC
Confidence            321 11112334567889999999876665 578999999999887655432  12354322222 688744 444543 


Q ss_pred             CCCcEEEeecccCCC----CceEEEeccCCCCCccceEEEEEEcCCeEEEEEc-------CCcEEEEeCCCC-----CCC
Q 007283          253 ADKSAKVWDISEDNH----GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL-------GGTISIFSANDL-----EKS  316 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~g~i~~~~~~~~-----~~~  316 (609)
                      .+++|.++|......    .+..+++...+.+.   ..+....++.++++...       .++|.+++....     ...
T Consensus       410 g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~---~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~  486 (567)
T 1qks_A          410 GDDSVALIGTDPEGHPDNAWKILDSFPALGGGS---LFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPE  486 (567)
T ss_dssp             SSSEEEEEECCTTTCTTTBTSEEEEEECSCSCC---CCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCC
T ss_pred             CCCeEEEecCCCCCCccccCEEEEEEecCCCCC---EEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCC
Confidence            468999999864211    34555554332211   11222223445555442       358999987654     221


Q ss_pred             ceeee--------CCCCCeEEEEEecCCCCEEEEEe----cCCcEEEEecCcc
Q 007283          317 PLQLS--------GHMKNVTALTVLNIDPKVILSSS----YDGLIVKWIQGIG  357 (609)
Q Consensus       317 ~~~~~--------~h~~~v~~~~~~~~~~~~~~t~s----~dg~i~~W~~~~~  357 (609)
                      ...+.        .-.+.+..+.|......+.++..    .++.|.+.|..+.
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          487 FKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             EEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             cEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence            12221        12346777777754444555532    3688888776543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.47  E-value=8.3e-10  Score=106.15  Aligned_cols=235  Identities=7%  Similarity=-0.066  Sum_probs=161.0

Q ss_pred             CceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccc-cccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeE
Q 007283           17 GRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSI-YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKK   94 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~-~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~   94 (609)
                      ..|..+..+|+|+..+... ++.+.+|+.. +..... ...+...+..++++|+|++.++...++.|..|+.. ++....
T Consensus        15 ~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~   92 (299)
T 2z2n_A           15 TGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEY   92 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEE
Confidence            4677999999998777665 5789999987 443221 22345679999999999998888778899999975 332211


Q ss_pred             EEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE--ecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           95 EFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF--DGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        95 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      .+......+..++++|+|..+++...+.     .++.++.......+  ..+...+..++++|++. ++++...++.+..
T Consensus        93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~d~~g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~  166 (299)
T 2z2n_A           93 TLPNPDSAPYGITEGPNGDIWFTEMNGN-----RIGRITDDGKIREYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGR  166 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTT-----EEEEECTTCCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEE
T ss_pred             eCCCcCCCceeeEECCCCCEEEEecCCc-----eEEEECCCCCEEEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEE
Confidence            2222345688999999998776643222     23344432222222  23456788999999986 4666666678888


Q ss_pred             EeCCCCceeee-ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283          173 YEGPPFKFKLS-HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       173 ~~~~~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                      ++. .++.... ...+...+..++++++|.++++...++.+.+||. +++... +. ...+...+.+++++++|+++++.
T Consensus       167 ~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~-~~~~~~~~~~i~~~~~g~l~v~~  242 (299)
T 2z2n_A          167 ITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FK-IPTPNARPHAITAGAGIDLWFTE  242 (299)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EE-CSSTTCCEEEEEECSTTCEEEEE
T ss_pred             EcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EE-CCCCCCCceeEEECCCCCEEEec
Confidence            887 5544322 3334556889999999997776666889999998 555322 21 12345678999999999977776


Q ss_pred             eCCCcEEEeecc
Q 007283          252 SADKSAKVWDIS  263 (609)
Q Consensus       252 s~d~~i~iwd~~  263 (609)
                      ..++.|..||..
T Consensus       243 ~~~~~i~~~d~~  254 (299)
T 2z2n_A          243 WGANKIGRLTSN  254 (299)
T ss_dssp             TTTTEEEEEETT
T ss_pred             cCCceEEEECCC
Confidence            678899999973

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.46  E-value=4.1e-11  Score=116.43  Aligned_cols=240  Identities=8%  Similarity=0.001  Sum_probs=159.8

Q ss_pred             ceeEEeecCCCCeEEE--------eCCCEEEEEeCCCCccccccc----cCCCCcEEEEECCC-CCEEEEEeCCCcEEEE
Q 007283           18 RGILISGHPKSNSILY--------TNGRSVIILDLSNPLQVSIYG----EHAYPATVARFSPN-GEWIASADVSGTVRIW   84 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~--------~~~~~~~i~~~~~~~~~~~~~----~h~~~v~~~~~sp~-g~~las~~~d~~i~vW   84 (609)
                      .|..+.++++|+.++.        ..++.+.+|+..+++......    ++...+..++++|+ |+++++... ..|.+|
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-~~l~~~   97 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-LGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-TEEEEE
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-CCEEEE
Confidence            3457788899976666        345789999987766533221    25567899999999 887666543 378889


Q ss_pred             cCCCCceeeEE-Eee----cccceeEEEECCCCCEEEEEECCC----------CcceEEEEEcCCCCeeEEEecCCccEE
Q 007283           85 GAHNDHVLKKE-FRV----LSGRIDDLQWSPDGLRIVACGDGK----------GKSLVRAFMWDSGTNVGEFDGHSRRVL  149 (609)
Q Consensus        85 d~~~~~~~~~~-~~~----~~~~v~~~~~spdg~~l~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~h~~~v~  149 (609)
                      |.. ++.. .. ...    ....+..++++|+|+.+++...+.          ......++.++.......+..+.....
T Consensus        98 d~~-g~~~-~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~  175 (314)
T 1pjx_A           98 QTD-GTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN  175 (314)
T ss_dssp             ETT-SCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE
T ss_pred             eCC-CCEE-EEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcc
Confidence            987 5432 11 111    123478999999998777654220          000134666664333333333344567


Q ss_pred             EEEEe----eCCCeEEEEecCCCeEEEEeCC-CCc-----eeeeccCcc-cceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283          150 SCAFK----PSRPFRIATCGEDFLVNFYEGP-PFK-----FKLSHRGHS-NFVNCVRFSPDGSKFISVSSDKKGIIYDGK  218 (609)
Q Consensus       150 ~~~~~----p~~~~~i~t~~~d~~i~~~~~~-~~~-----~~~~~~~h~-~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~  218 (609)
                      .++++    |++..++++...++.+..|+.. .++     ....+.++. .....++++++|+++++...++.|.+||..
T Consensus       176 ~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred             eEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCC
Confidence            88999    9987656666777888888754 332     222334444 567889999999988887788999999988


Q ss_pred             CCccccccCcCCCCccceEEEEECCCCCe-EEEEeCCCcEEEeecc
Q 007283          219 TADKIGELSPEDGHKGSVYAVSWSPDGKQ-VLTASADKSAKVWDIS  263 (609)
Q Consensus       219 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~-l~s~s~d~~i~iwd~~  263 (609)
                      +++.+..+.   .+...+.+++|+|+++. +++...++.|..|++.
T Consensus       256 ~g~~~~~~~---~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~  298 (314)
T 1pjx_A          256 GGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             CBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCcEeEEEe---CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCC
Confidence            676554442   34467999999999994 4555566889999875

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.46  E-value=5.9e-12  Score=136.71  Aligned_cols=230  Identities=13%  Similarity=0.073  Sum_probs=142.5

Q ss_pred             CCCCeEEEeC---C---CEEEEEeCCCCcccccc------ccCCCCcEEEEECCCCCEEE-----EEeCCCcEEEEcCCC
Q 007283           26 PKSNSILYTN---G---RSVIILDLSNPLQVSIY------GEHAYPATVARFSPNGEWIA-----SADVSGTVRIWGAHN   88 (609)
Q Consensus        26 ~~~~~l~~~~---~---~~~~i~~~~~~~~~~~~------~~h~~~v~~~~~sp~g~~la-----s~~~d~~i~vWd~~~   88 (609)
                      |+|..++|..   +   ..+.+.+...+.....+      .+|...+..++|||||++||     +|+.+.+|++||+.+
T Consensus        77 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~t  156 (695)
T 2bkl_A           77 RRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDS  156 (695)
T ss_dssp             EETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTT
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCC
Confidence            6677776652   1   23344444444432222      25666789999999999999     445567899999998


Q ss_pred             CceeeEEEeecccce--eEEEECCCCCEEEEEECCCC----------cceEEEEEcCCCC----eeEEEecCCccEEEEE
Q 007283           89 DHVLKKEFRVLSGRI--DDLQWSPDGLRIVACGDGKG----------KSLVRAFMWDSGT----NVGEFDGHSRRVLSCA  152 (609)
Q Consensus        89 ~~~~~~~~~~~~~~v--~~~~~spdg~~l~~~~~~~~----------~~~~~~~~~~~~~----~~~~~~~h~~~v~~~~  152 (609)
                      ++.+.   ..+...+  ..++|||||+.|+.+..+..          ...+++|...++.    .+.....|...+..+.
T Consensus       157 g~~~~---~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          157 GEWSK---VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             CCBCS---SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCcC---CcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            76431   1121223  68999999999998876443          1224444444433    2222334556789999


Q ss_pred             EeeCCCeEEEEecCC-C--eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCcc--c
Q 007283          153 FKPSRPFRIATCGED-F--LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS----DKKGIIYDGKTADK--I  223 (609)
Q Consensus       153 ~~p~~~~~i~t~~~d-~--~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~----d~~i~iwd~~~~~~--~  223 (609)
                      |+|++..++.+...+ .  .+.+++.+.++.. .+..+...+....+ ++|. |+..+.    ++.+.+||..+++.  +
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-EeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            999998755544333 2  5556665444332 23334445555556 6766 554443    57899999877653  2


Q ss_pred             cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          224 GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       224 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ..+... .+...+..++|+ ++.++++...|+..++|.+.
T Consensus       311 ~~l~~~-~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          311 KEIVPE-DSSASLLSVSIV-GGHLSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             EEEECC-CSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred             eEEecC-CCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            222211 124468888988 67788899999999988765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.46  E-value=9.7e-10  Score=114.65  Aligned_cols=325  Identities=14%  Similarity=0.105  Sum_probs=196.1

Q ss_pred             eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCccccccCcCCCCccce
Q 007283          159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK--TADKIGELSPEDGHKGSV  236 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~--~~~~~~~~~~~~~h~~~V  236 (609)
                      ..+++...++.+.++|..+++....+... ..+..+.|+|||+++.+++.|+.+.+||..  +.+.+..+..  +  ..-
T Consensus       168 ~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~--G--~~P  242 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI--G--SEA  242 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC--C--SEE
T ss_pred             eEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEec--C--CCC
Confidence            45777888899999999988877665422 246689999999999999999999999985  6666655532  2  235


Q ss_pred             EEEEEC----CCCCeEEEEeC-CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCC
Q 007283          237 YAVSWS----PDGKQVLTASA-DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAN  311 (609)
Q Consensus       237 ~~l~~s----pd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~  311 (609)
                      ..++|+    |||++++++.. ++++.++|..   ..+.++.+...+..                             .+
T Consensus       243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~---t~~~~~~i~~~~~~-----------------------------~~  290 (567)
T 1qks_A          243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGE---TLEPKKIQSTRGMT-----------------------------YD  290 (567)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETT---TCCEEEEEECCEEC-----------------------------TT
T ss_pred             ceeEEccccCCCCCEEEEEEccCCeEEEEECC---CCcEEEEEeccccc-----------------------------cc
Confidence            789999    69998887765 5899999965   23444433211000                             00


Q ss_pred             CCCCCceeeeCCCC-CeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEE
Q 007283          312 DLEKSPLQLSGHMK-NVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIW  390 (609)
Q Consensus       312 ~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  390 (609)
                      .       ...|.. .+..+..+...+.++++...+|.|.+++......                    +          
T Consensus       291 ~-------~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~--------------------~----------  333 (567)
T 1qks_A          291 E-------QEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN--------------------L----------  333 (567)
T ss_dssp             T-------CCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE--------------------E----------
T ss_pred             c-------ccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc--------------------c----------
Confidence            0       000111 3334443333344555555556665554321000                    0          


Q ss_pred             EEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEe-CCC
Q 007283          391 RVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGS-QDG  469 (609)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs-~dg  469 (609)
                                                                       ....+..........++|+|++++++. .++
T Consensus       334 -------------------------------------------------~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn  364 (567)
T 1qks_A          334 -------------------------------------------------KTTEISAERFLHDGGLDGSHRYFITAANARN  364 (567)
T ss_dssp             -------------------------------------------------EEEEEECCSSEEEEEECTTSCEEEEEEGGGT
T ss_pred             -------------------------------------------------eeeeeeccccccCceECCCCCEEEEEeCCCC
Confidence                                                             000000111244567899999987665 578


Q ss_pred             cEEEEEecCCeeeeeEEE---ecCCCceEEEEECCCC-CEEEEEe-CCCeEEEEEccCCc-----e-EEeeecCCCCceE
Q 007283          470 KLRVYSIRGDTLTEEAVL---EKHRGAVSVIRYSPDV-SMFASGD-VNREAIVWDRVSRE-----V-KLKNMLYHTARIN  538 (609)
Q Consensus       470 ~i~iw~~~~~~~~~~~~~---~~h~~~i~~v~~s~~~-~~l~s~s-~d~~v~iwd~~~~~-----~-~~~~~~~h~~~i~  538 (609)
                      +|.++|..++.+......   ..|.+.-..+ ++|++ ...+++. .+++|.++|..+..     . .++.+......-.
T Consensus       365 ~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~  443 (567)
T 1qks_A          365 KLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL  443 (567)
T ss_dssp             EEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCC
T ss_pred             eEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCE
Confidence            999999998876543322   1354332222 68884 4555543 46899999976621     1 1222332222223


Q ss_pred             EEEECCCCcEEEEEeC-------CCeEEEEEcCCCC----CcceeEec-c-------ccCCeEEEEEc-CCCe-EEEEe-
Q 007283          539 CLAWSPNNSMVATGSL-------DTCVIIYEIDKPA----SSRMTIKG-A-------HLGGVYGLAFT-DEHS-VVSSG-  596 (609)
Q Consensus       539 ~l~~s~d~~~l~s~s~-------D~~v~vw~~~~~~----~~~~~~~~-~-------h~~~v~~~~~s-~~~~-l~s~s-  596 (609)
                      -++.+||+++|.....       .++|.|+|+.+..    ........ +       -..++..+.|+ +++. ++|.. 
T Consensus       444 ~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~  523 (567)
T 1qks_A          444 FIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWN  523 (567)
T ss_dssp             CEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEEC
T ss_pred             EEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeec
Confidence            4778999999988763       4599999997541    11111111 1       13468899999 6665 45644 


Q ss_pred             ---CCCcEEEEEcc
Q 007283          597 ---EDACVRVWRLT  607 (609)
Q Consensus       597 ---~D~~i~~W~~~  607 (609)
                         .++.|.+.|..
T Consensus       524 ~~~~~~~i~v~D~~  537 (567)
T 1qks_A          524 GKDQESALVVVDDK  537 (567)
T ss_dssp             CTTSCCEEEEEETT
T ss_pred             CCCCCCcEEEEECC
Confidence               37889888764

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.45  E-value=1.2e-10  Score=110.28  Aligned_cols=214  Identities=10%  Similarity=0.033  Sum_probs=155.7

Q ss_pred             CCeEEEeC-CCEEEEEeCCCCccccccccCC-CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec-cccee
Q 007283           28 SNSILYTN-GRSVIILDLSNPLQVSIYGEHA-YPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL-SGRID  104 (609)
Q Consensus        28 ~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~-~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~-~~~v~  104 (609)
                      ++.|+... .+.+.+||.++++.+..+..|. ..+..++++|+|++|++  .++.|+.||. +++.+ .++... ...+.
T Consensus         5 ~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs--~~~~V~~~d~-~G~~~-W~~~~~~~~~~~   80 (276)
T 3no2_A            5 QHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFS--YSKGAKMITR-DGREL-WNIAAPAGCEMQ   80 (276)
T ss_dssp             CEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEE--CBSEEEEECT-TSCEE-EEEECCTTCEEE
T ss_pred             CcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEe--CCCCEEEECC-CCCEE-EEEcCCCCcccc
Confidence            45566554 4799999998999888787765 46889999999999994  4778999998 66643 445543 24688


Q ss_pred             EEEECCCCCEEEEEECCCCcceEEEEEcC-CCCeeEEEe------cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283          105 DLQWSPDGLRIVACGDGKGKSLVRAFMWD-SGTNVGEFD------GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP  177 (609)
Q Consensus       105 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~------~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~  177 (609)
                      .+++.|||+.+++...+.    .+++.++ .++.+..+.      ++......+++.+++.. +++...++.+..||.. 
T Consensus        81 ~~~~~~dG~~lv~~~~~~----~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~-lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           81 TARILPDGNALVAWCGHP----STILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNY-LVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEECTTSCEEEEEESTT----EEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCE-EEEETTTTEEEEECTT-
T ss_pred             ccEECCCCCEEEEecCCC----CEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCE-EEEecCCCEEEEECCC-
Confidence            899999999999866422    2345554 455555553      12223445567888874 7888889999999987 


Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCC--C-CccceEEEEECCCCCeEEEEe
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED--G-HKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~-h~~~V~~l~~spd~~~l~s~s  252 (609)
                      ++....+..+ ....++.+.++|+.++++..++.+..+|..+++.+..+....  + .-..+..+...++|..+++..
T Consensus       155 G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~  231 (276)
T 3no2_A          155 GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNW  231 (276)
T ss_dssp             SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcCCCCEEEEec
Confidence            8877776554 345567889999999988888899999999899877663211  1 123378889999999888874

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.40  E-value=2.3e-10  Score=111.85  Aligned_cols=264  Identities=12%  Similarity=0.078  Sum_probs=163.2

Q ss_pred             CCCeEEEEeCCCCceeeecc------CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEE
Q 007283          166 EDFLVNFYEGPPFKFKLSHR------GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAV  239 (609)
Q Consensus       166 ~d~~i~~~~~~~~~~~~~~~------~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l  239 (609)
                      .++.+.++|..+++......      ........+.+. +++.+++...++.+.++|..+++.+.++.    .......+
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~----~~~~p~~i   89 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT----GFTSPRYI   89 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE----CCSSEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC----CCCCCcEE
Confidence            47889999988877654321      122345677774 34556666678999999999998877663    23457899


Q ss_pred             EECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCcee
Q 007283          240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQ  319 (609)
Q Consensus       240 ~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~  319 (609)
                      +++|+++.+++...++.|.+||+..   ++....+.....                                        
T Consensus        90 ~~~~~g~lyv~~~~~~~v~~iD~~t---~~~~~~i~~g~~----------------------------------------  126 (328)
T 3dsm_A           90 HFLSDEKAYVTQIWDYRIFIINPKT---YEITGYIECPDM----------------------------------------  126 (328)
T ss_dssp             EEEETTEEEEEEBSCSEEEEEETTT---TEEEEEEECTTC----------------------------------------
T ss_pred             EEeCCCeEEEEECCCCeEEEEECCC---CeEEEEEEcCCc----------------------------------------
Confidence            9999996555555789999999862   333333221100                                        


Q ss_pred             eeCCCCCeEEEEEecCCCCEEEEEe-cCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCc
Q 007283          320 LSGHMKNVTALTVLNIDPKVILSSS-YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQ  398 (609)
Q Consensus       320 ~~~h~~~v~~~~~~~~~~~~~~t~s-~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~  398 (609)
                       .+.......+++.  ++.++++.. .++.|.+++..+...                                       
T Consensus       127 -~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~~---------------------------------------  164 (328)
T 3dsm_A          127 -DMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDKV---------------------------------------  164 (328)
T ss_dssp             -CTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTEE---------------------------------------
T ss_pred             -cccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCeE---------------------------------------
Confidence             0001111223331  224444443 467777776543210                                       


Q ss_pred             cccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCC----------
Q 007283          399 CGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQD----------  468 (609)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~d----------  468 (609)
                                                                ...+........++++|+|++++++..+          
T Consensus       165 ------------------------------------------~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~  202 (328)
T 3dsm_A          165 ------------------------------------------VDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEA  202 (328)
T ss_dssp             ------------------------------------------EEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred             ------------------------------------------EEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCC
Confidence                                                      0000000113445678999877777655          


Q ss_pred             CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeec-CCCCceEEEEECC-CC
Q 007283          469 GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNML-YHTARINCLAWSP-NN  546 (609)
Q Consensus       469 g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~-~h~~~i~~l~~s~-d~  546 (609)
                      +.|.++|..++.+.....+ ........++|+||+.++.++..  .+.+||..+.+....... .+.....+++++| ++
T Consensus       203 ~~v~~id~~t~~v~~~~~~-~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g  279 (328)
T 3dsm_A          203 PSLYRIDAETFTVEKQFKF-KLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNG  279 (328)
T ss_dssp             CEEEEEETTTTEEEEEEEC-CTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTC
T ss_pred             ceEEEEECCCCeEEEEEec-CCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCC
Confidence            7899999877765422221 11236899999999998887665  899999877654211111 1245688999999 55


Q ss_pred             cEEEEE----eCCCeEEEEEcC
Q 007283          547 SMVATG----SLDTCVIIYEID  564 (609)
Q Consensus       547 ~~l~s~----s~D~~v~vw~~~  564 (609)
                      +++++.    ..++.|.+||.+
T Consensus       280 ~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          280 EVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             CEEEEECTTSSSEEEEEEECTT
T ss_pred             eEEEEcccccccCCEEEEECCC
Confidence            666666    678999999986

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.40  E-value=3.9e-09  Score=101.42  Aligned_cols=276  Identities=8%  Similarity=-0.019  Sum_probs=171.0

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG  135 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  135 (609)
                      +...+.+++++|+|++.++...++.|.+||.. ++............+..++++|+|..+++...+.     +++.++..
T Consensus        13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~-----~i~~~~~~   86 (299)
T 2z2n_A           13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAAN-----KIGRITKK   86 (299)
T ss_dssp             SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTT-----EEEEECTT
T ss_pred             cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCC-----eEEEECCC
Confidence            44568999999999988887778899999987 5432222222345789999999998777643222     24444433


Q ss_pred             CeeEEEe--cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee-eeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          136 TNVGEFD--GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-LSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       136 ~~~~~~~--~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~-~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                      .....+.  .....+..++++|++. ++++...++.+..++. .++.. .....+...+..+++.++|..+++...++.+
T Consensus        87 g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i  164 (299)
T 2z2n_A           87 GIIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAI  164 (299)
T ss_dssp             SCEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CcEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEE
Confidence            3333333  3455788999999886 4666666778888886 44332 2233345678999999999887777677899


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      ..||. +++... +. ...+...+.++++.++|+++++...++.|..||..    ++..........    .....+...
T Consensus       165 ~~~~~-~g~~~~-~~-~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~----g~~~~~~~~~~~----~~~~~i~~~  233 (299)
T 2z2n_A          165 GRITE-SGDITE-FK-IPTPASGPVGITKGNDDALWFVEIIGNKIGRITTS----GEITEFKIPTPN----ARPHAITAG  233 (299)
T ss_dssp             EEECT-TCCEEE-EE-CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTT----CCEEEEECSSTT----CCEEEEEEC
T ss_pred             EEEcC-CCcEEE-ee-CCCCCCcceeEEECCCCCEEEEccCCceEEEECCC----CcEEEEECCCCC----CCceeEEEC
Confidence            99998 554332 11 11234568899999999987777778899999972    222221111111    112223333


Q ss_pred             -CCeEEEEE-cCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283          293 -NDFLVIVS-LGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       293 -~~~~~~~~-~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~  354 (609)
                       +..+.++. .++.+..|+.+ .......+..+...+.++++  .++.+.++.+ .+.+..++.
T Consensus       234 ~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~i~~--~~g~l~v~~~-~~~l~~~~~  293 (299)
T 2z2n_A          234 AGIDLWFTEWGANKIGRLTSN-NIIEEYPIQIKSAEPHGICF--DGETIWFAME-CDKIGKLTL  293 (299)
T ss_dssp             STTCEEEEETTTTEEEEEETT-TEEEEEECSSSSCCEEEEEE--CSSCEEEEET-TTEEEEEEE
T ss_pred             CCCCEEEeccCCceEEEECCC-CceEEEeCCCCCCccceEEe--cCCCEEEEec-CCcEEEEEc
Confidence             33455554 56788888863 11111123345567778877  3455555554 444544443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.39  E-value=4e-10  Score=108.42  Aligned_cols=225  Identities=9%  Similarity=0.073  Sum_probs=152.9

Q ss_pred             EEeecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee
Q 007283           21 LISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV   98 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~   98 (609)
                      ...++|+++.|++..  ++.+..||..++.... + .+...+.+++++|+|+++++.  +..|.+||..+++... ....
T Consensus        17 gp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~-~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~-~~~~   91 (297)
T 3g4e_A           17 SPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR-V-TMDAPVSSVALRQSGGYVATI--GTKFCALNWKEQSAVV-LATV   91 (297)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-E-ECSSCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEE-EEEC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-E-eCCCceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEE-EEec
Confidence            566788777776653  5789999998765532 3 235679999999999977765  5679999988765321 1111


Q ss_pred             c----ccceeEEEECCCCCEEEEEECCCC------cceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC
Q 007283           99 L----SGRIDDLQWSPDGLRIVACGDGKG------KSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF  168 (609)
Q Consensus        99 ~----~~~v~~~~~spdg~~l~~~~~~~~------~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~  168 (609)
                      .    ...+..++++|||+.+++......      .....++.++....+..+..+......++|+|++..++++...++
T Consensus        92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~  171 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSY  171 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGT
T ss_pred             CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCC
Confidence            1    234788999999997775432110      122456666654333333334445678999999987677777778


Q ss_pred             eEEEEeC--CCCce-----eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEE
Q 007283          169 LVNFYEG--PPFKF-----KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSW  241 (609)
Q Consensus       169 ~i~~~~~--~~~~~-----~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~  241 (609)
                      .|..|+.  ..+..     ...+..+......+++.++|+++++...++.|..||..+++.+..+.   .+...+++++|
T Consensus       172 ~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~---~p~~~~t~~~f  248 (297)
T 3g4e_A          172 SVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVK---LPVDKTTSCCF  248 (297)
T ss_dssp             EEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEE---CSSSBEEEEEE
T ss_pred             cEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEE---CCCCCceEEEE
Confidence            8888875  34432     12233344567889999999888877778889999998888776653   24467999999


Q ss_pred             C-CCCCeEEEEeC
Q 007283          242 S-PDGKQVLTASA  253 (609)
Q Consensus       242 s-pd~~~l~s~s~  253 (609)
                      . ||++.|+..+.
T Consensus       249 ~g~d~~~L~vt~~  261 (297)
T 3g4e_A          249 GGKNYSEMYVTCA  261 (297)
T ss_dssp             ESGGGCEEEEEEB
T ss_pred             eCCCCCEEEEEcC
Confidence            8 88876655543

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.39  E-value=2.2e-10  Score=108.52  Aligned_cols=193  Identities=6%  Similarity=0.077  Sum_probs=138.7

Q ss_pred             CCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecc-cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecC-
Q 007283           67 PNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLS-GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGH-  144 (609)
Q Consensus        67 p~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~-~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-  144 (609)
                      ..|++|++++.|+.|++||.++++.+ .++..+. ..+..++++|+|+.|++ .++    .+..++. +++.+..+..+ 
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~-w~~~~~~~~~~~~~~~~pdG~ilvs-~~~----~V~~~d~-~G~~~W~~~~~~   75 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIV-WEYPLEKGWECNSVAATKAGEILFS-YSK----GAKMITR-DGRELWNIAAPA   75 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEE-EEEECCTTCCCCEEEECTTSCEEEE-CBS----EEEEECT-TSCEEEEEECCT
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEE-EEeCCCccCCCcCeEECCCCCEEEe-CCC----CEEEECC-CCCEEEEEcCCC
Confidence            35689999999999999999888754 4455544 46889999999998883 321    2444444 57777888765 


Q ss_pred             CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc------CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283          145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR------GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK  218 (609)
Q Consensus       145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~------~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~  218 (609)
                      ...+.++.+.|++..+++.++.++.+..++. .++....+.      ++......+.+.++|+++++...++.+..||.+
T Consensus        76 ~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~  154 (276)
T 3no2_A           76 GCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN  154 (276)
T ss_dssp             TCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT
T ss_pred             CccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC
Confidence            3578899999999864444443666666664 454433321      233345566789999999999999999999988


Q ss_pred             CCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEec
Q 007283          219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       219 ~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                       ++.+..+..    .....++.+.++|..+++++.+++|..+|..   .++.+-.+.
T Consensus       155 -G~~~w~~~~----~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~---tG~~~w~~~  203 (276)
T 3no2_A          155 -GQLLNSVKL----SGTPFSSAFLDNGDCLVACGDAHCFVQLNLE---SNRIVRRVN  203 (276)
T ss_dssp             -SCEEEEEEC----SSCCCEEEECTTSCEEEECBTTSEEEEECTT---TCCEEEEEE
T ss_pred             -CCEEEEEEC----CCCccceeEcCCCCEEEEeCCCCeEEEEeCc---CCcEEEEec
Confidence             887776632    2345678888999999999888899999976   355655553

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.36  E-value=3.2e-10  Score=123.92  Aligned_cols=231  Identities=13%  Similarity=0.080  Sum_probs=139.3

Q ss_pred             CCCCeEEEeC---C---CEEEEEeCC---CCccccc------cccCCCCcEEEEECCCCCEEEEEeCC-----CcEEEEc
Q 007283           26 PKSNSILYTN---G---RSVIILDLS---NPLQVSI------YGEHAYPATVARFSPNGEWIASADVS-----GTVRIWG   85 (609)
Q Consensus        26 ~~~~~l~~~~---~---~~~~i~~~~---~~~~~~~------~~~h~~~v~~~~~sp~g~~las~~~d-----~~i~vWd   85 (609)
                      |+|+.++|..   +   ..+.+.+..   ++.....      -.+|...+..++|||||++||.++.+     .+|++||
T Consensus       116 pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~d  195 (741)
T 1yr2_A          116 RRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVG  195 (741)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEE
T ss_pred             EECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEE
Confidence            7787777652   2   233344443   3333221      12344468899999999999976543     3699999


Q ss_pred             CCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCc---------ceEEEEEcCCCCe----eEEEe--cCCccEEE
Q 007283           86 AHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK---------SLVRAFMWDSGTN----VGEFD--GHSRRVLS  150 (609)
Q Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~---------~~~~~~~~~~~~~----~~~~~--~h~~~v~~  150 (609)
                      +.+++.+..  ......+..++|||| +.|+.+..+...         ...+++.|+.+..    ...+.  .+...+..
T Consensus       196 l~tg~~~~~--~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          196 VADGKPLAD--ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             TTTCCEEEE--EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCCCCCc--cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            998875432  112223468899999 999888754431         0123455554321    22233  33346889


Q ss_pred             EEEeeCCCeEEEEecC----CCeEEEEeCCCC--ceeeeccCcccceEEEEEcCCCCEEEEEeCC----CcEEEEeCCCC
Q 007283          151 CAFKPSRPFRIATCGE----DFLVNFYEGPPF--KFKLSHRGHSNFVNCVRFSPDGSKFISVSSD----KKGIIYDGKTA  220 (609)
Q Consensus       151 ~~~~p~~~~~i~t~~~----d~~i~~~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d----~~i~iwd~~~~  220 (609)
                      +.|+|+|..++.+...    ...+.+|+...+  +....+..+...+... ++|+|+.|+..+.+    +.+.+||..++
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            9999999875554432    347888886554  3122333444444444 34899988888764    45899998774


Q ss_pred             c-cccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          221 D-KIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       221 ~-~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      . ....+.  ..+...+..+.|+ ++.++++...|+..++|.+.
T Consensus       352 ~~~~~~l~--~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          352 TPRFDTVV--PESKDNLESVGIA-GNRLFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SCEEEEEE--CCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEE
T ss_pred             ccccEEEe--cCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEe
Confidence            2 333332  2344557778887 56678888889988888654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.36  E-value=6.9e-10  Score=108.38  Aligned_cols=241  Identities=7%  Similarity=0.004  Sum_probs=158.2

Q ss_pred             eeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283           19 GILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR   97 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~   97 (609)
                      +..+.... +...+.. .++.+.++|..+++.+..+. .......++++|+|++.++...++.|.+||..+.+... .+.
T Consensus        46 ~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~-~i~  122 (328)
T 3dsm_A           46 AQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITG-YIE  122 (328)
T ss_dssp             EEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEE-EEE
T ss_pred             ceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEE-EEE
Confidence            34555543 3333333 35799999999988876664 34568899999999766666589999999998876432 333


Q ss_pred             ecc-----cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-----
Q 007283           98 VLS-----GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-----  167 (609)
Q Consensus        98 ~~~-----~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-----  167 (609)
                      ...     .....+++  ++.+|.++..+. ...+.+++.++++....+... .....++++|++.. ++++..+     
T Consensus       123 ~g~~~~~~~~p~~i~~--~~~~lyv~~~~~-~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l-~v~~~~~~~~~~  197 (328)
T 3dsm_A          123 CPDMDMESGSTEQMVQ--YGKYVYVNCWSY-QNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKM-WTITDGGYEGSP  197 (328)
T ss_dssp             CTTCCTTTCBCCCEEE--ETTEEEEEECTT-CCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEE-EEEBCCBCTTCS
T ss_pred             cCCccccCCCcceEEE--ECCEEEEEcCCC-CCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCE-EEEECCCccCCc
Confidence            222     14566777  455555554321 124567777777666665532 23467889999874 5555443     


Q ss_pred             -----CeEEEEeCCCCceeeeccC-cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEE
Q 007283          168 -----FLVNFYEGPPFKFKLSHRG-HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSW  241 (609)
Q Consensus       168 -----~~i~~~~~~~~~~~~~~~~-h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~  241 (609)
                           +.+.++|..+.+....+.- .......++|+||++.|.++..  .+.+||..+++..... ...........+++
T Consensus       198 ~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~-~~~~~~~~p~gi~v  274 (328)
T 3dsm_A          198 YGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP-FLEFRDTKYYGLTV  274 (328)
T ss_dssp             SCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC-SBCCCSSCEEEEEE
T ss_pred             cccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee-eecCCCCceEEEEE
Confidence                 6899999888776544421 1235789999999998877654  8999999887753211 11112356889999


Q ss_pred             CC-CCCeEEEE----eCCCcEEEeecccCCCCceEEEe
Q 007283          242 SP-DGKQVLTA----SADKSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       242 sp-d~~~l~s~----s~d~~i~iwd~~~~~~~~~~~~~  274 (609)
                      +| ++.++++.    ..++.|.+||..    ++.+..+
T Consensus       275 dp~~g~lyva~~~~y~~~~~V~v~d~~----g~~~~~i  308 (328)
T 3dsm_A          275 NPNNGEVYVADAIDYQQQGIVYRYSPQ----GKLIDEF  308 (328)
T ss_dssp             CTTTCCEEEEECTTSSSEEEEEEECTT----CCEEEEE
T ss_pred             cCCCCeEEEEcccccccCCEEEEECCC----CCEEEEE
Confidence            99 55566665    568899999975    4455444

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.34  E-value=1.5e-09  Score=107.48  Aligned_cols=233  Identities=11%  Similarity=0.049  Sum_probs=143.2

Q ss_pred             ecCCCCeEEEeCC--C----EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe----------CCCcEEEEcCC
Q 007283           24 GHPKSNSILYTNG--R----SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD----------VSGTVRIWGAH   87 (609)
Q Consensus        24 ~~~~~~~l~~~~~--~----~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~----------~d~~i~vWd~~   87 (609)
                      ..|++..++..+.  .    .+.++|..+++.+..+..-..+  .++|||||++|+.+.          .+++|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3477765544442  2    7899999988876655433333  899999999998775          36789999998


Q ss_pred             CCceeeEEEeec-------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEE-EecCCccEEEEEEeeCCCe
Q 007283           88 NDHVLKKEFRVL-------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPF  159 (609)
Q Consensus        88 ~~~~~~~~~~~~-------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~  159 (609)
                      +.+... .+...       ......++|||||++|+++.... ...+.+++ ++++.+.. +.-. .   ++.+.|++..
T Consensus       106 t~~~~~-~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~-~~~v~viD-~t~~~~~~~i~~~-~---~~~~~~~~~~  178 (373)
T 2mad_H          106 TFLPIA-DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAA-GPAVGLVV-QGGSSDDQLLSSP-T---CYHIHPGAPS  178 (373)
T ss_pred             CCcEEE-EEECCCccccccCCCccceEECCCCCEEEEEecCC-CCeEEEEE-CCCCEEeEEcCCC-c---eEEEEeCCCc
Confidence            765433 22211       12345789999999999876432 12356677 77666555 4311 1   1223344333


Q ss_pred             EEEEecCCCeEEEEeCCCCcee--------------------------------------------------eecc--C-
Q 007283          160 RIATCGEDFLVNFYEGPPFKFK--------------------------------------------------LSHR--G-  186 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~~~~~--------------------------------------------------~~~~--~-  186 (609)
                      .+++...|+.+.+++. .++..                                                  ..+.  . 
T Consensus       179 ~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~  257 (373)
T 2mad_H          179 TFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSG  257 (373)
T ss_pred             eEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCC
Confidence            3333333443333332 11111                                                  0000  0 


Q ss_pred             -------cccceEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eE
Q 007283          187 -------HSNFVNCVRFSPDGSKFISVSS----------DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QV  248 (609)
Q Consensus       187 -------h~~~v~~l~~s~dg~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l  248 (609)
                             .......+.++||++.+..+..          ++.|.++|..+.+.+.++..    .....++.|+|||+ ++
T Consensus       258 ~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l  333 (373)
T 2mad_H          258 GRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDL  333 (373)
T ss_pred             cccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEE
Confidence                   0111233778999887766543          35799999999988777732    23578999999999 77


Q ss_pred             EEEe-CCCcEEEeecccCCCCceEEE
Q 007283          249 LTAS-ADKSAKVWDISEDNHGKLKKT  273 (609)
Q Consensus       249 ~s~s-~d~~i~iwd~~~~~~~~~~~~  273 (609)
                      +++. .++.|.++|+.   .++..+.
T Consensus       334 ~v~~~~~~~V~ViD~~---t~~vv~~  356 (373)
T 2mad_H          334 YALSAGTEVLHIYDAG---AGDQDQS  356 (373)
T ss_pred             EEEcCCCCeEEEEECC---CCCEEee
Confidence            7776 58999999987   3455544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.34  E-value=8.9e-11  Score=128.36  Aligned_cols=241  Identities=12%  Similarity=0.045  Sum_probs=153.7

Q ss_pred             ceeEEeecCCCCeEEEeC---C---CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCc-----------
Q 007283           18 RGILISGHPKSNSILYTN---G---RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGT-----------   80 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~---~---~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~-----------   80 (609)
                      ....++++|||+.|+|..   |   ..+.++|+.+++.+.. ..+...+..++|+|| +.|+.++.|+.           
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            344788999999999863   3   2699999998876542 222222467899999 99998776654           


Q ss_pred             ---EEEEcCCCCcee-eEEEeec--ccceeEEEECCCCCEEEEEECCC--CcceEEEEEcCCC--CeeEEEecCCccEEE
Q 007283           81 ---VRIWGAHNDHVL-KKEFRVL--SGRIDDLQWSPDGLRIVACGDGK--GKSLVRAFMWDSG--TNVGEFDGHSRRVLS  150 (609)
Q Consensus        81 ---i~vWd~~~~~~~-~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~h~~~v~~  150 (609)
                         |.+|++.++... ...+...  ...+..+.|||||++|+......  ....+.+++.+.+  .....+..+...+..
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  321 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD  321 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence               889998765421 1122222  23478999999999988776432  2234445554444  214455555555544


Q ss_pred             EEEeeCCCeEEEEecC---CCeEEEEeCCCC--ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcccc
Q 007283          151 CAFKPSRPFRIATCGE---DFLVNFYEGPPF--KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK-TADKIG  224 (609)
Q Consensus       151 ~~~~p~~~~~i~t~~~---d~~i~~~~~~~~--~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~-~~~~~~  224 (609)
                      .. +|++..++.....   +..+..|+....  .....+.++...+..+.++ ++.++++...|+...||... +++...
T Consensus       322 ~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~  399 (741)
T 1yr2_A          322 FV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAG  399 (741)
T ss_dssp             EE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEE
T ss_pred             EE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCcee
Confidence            43 4787764444332   456888887653  3333444555567778887 55677888889887777543 344343


Q ss_pred             ccCcCCCCccceEEEEECCCCCeEEEE----eCCCcEEEeeccc
Q 007283          225 ELSPEDGHKGSVYAVSWSPDGKQVLTA----SADKSAKVWDISE  264 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd~~~l~s~----s~d~~i~iwd~~~  264 (609)
                      .+.  ..+.+.|..+.++|++..|+..    ...++++.||+..
T Consensus       400 ~l~--~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t  441 (741)
T 1yr2_A          400 AVS--LPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPAT  441 (741)
T ss_dssp             ECB--CSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTT
T ss_pred             ecc--CCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCC
Confidence            332  1235678999999998866522    2347899999863

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=1.7e-09  Score=105.44  Aligned_cols=224  Identities=12%  Similarity=0.039  Sum_probs=147.3

Q ss_pred             eeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEE
Q 007283           19 GILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF   96 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~   96 (609)
                      +-...++|+++.+++.+  ++.+..|+..+++... +. +...+.+++++|+|+++++. .+ .|.+||..+++..  .+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~--~~  124 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLT--LH  124 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEE--EE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEE--EE
Confidence            34677899877776653  5789999987765432 32 34579999999999988865 33 4999998776532  12


Q ss_pred             eec-----ccceeEEEECCCCCEEEEEECC-CCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283           97 RVL-----SGRIDDLQWSPDGLRIVACGDG-KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV  170 (609)
Q Consensus        97 ~~~-----~~~v~~~~~spdg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i  170 (609)
                      ...     ...+..++++|+|+.+++.... .......++.++ ......+..+......++|+|++..++++...++.|
T Consensus       125 ~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I  203 (326)
T 2ghs_A          125 AELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRL  203 (326)
T ss_dssp             ECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEE
T ss_pred             eeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEE
Confidence            211     2357899999999877654321 111123455555 333333333334567899999998666666777889


Q ss_pred             EEEeCC--CC-ce-----eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEEC
Q 007283          171 NFYEGP--PF-KF-----KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS  242 (609)
Q Consensus       171 ~~~~~~--~~-~~-----~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s  242 (609)
                      ..|+..  .+ +.     ...+.........+++.++|.++++...++.|..|+. +++.+..+.   .+...+++++|+
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~---~~~~~~~~~af~  279 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYE---VPGKQTTCPAFI  279 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEE---CSCSBEEEEEEE
T ss_pred             EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEE---CCCCCcEEEEEe
Confidence            999864  44 21     1223333455678999999987777667788999998 555554442   244569999998


Q ss_pred             -CCCCeEEEEeC
Q 007283          243 -PDGKQVLTASA  253 (609)
Q Consensus       243 -pd~~~l~s~s~  253 (609)
                       |++..|+.++.
T Consensus       280 g~d~~~L~vt~~  291 (326)
T 2ghs_A          280 GPDASRLLVTSA  291 (326)
T ss_dssp             STTSCEEEEEEB
T ss_pred             cCCCCEEEEEec
Confidence             88876655443

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.32  E-value=2.6e-08  Score=95.61  Aligned_cols=236  Identities=7%  Similarity=-0.088  Sum_probs=158.7

Q ss_pred             cCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCcccc-ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceee
Q 007283           16 RGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVS-IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK   93 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~-~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~   93 (609)
                      ...|..+..+++|+..+... ++.+.+++.. ++... .+..+...+..++++|+|++.++...++.|..+|.. ++...
T Consensus        19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~   96 (300)
T 2qc5_A           19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTE   96 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE
T ss_pred             CCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEE
Confidence            34778999999998766654 5789999987 44332 122334578999999999988887778899999977 44322


Q ss_pred             EEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE--ecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           94 KEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF--DGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        94 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                      .........+..+++.|+|+.+++...+.   .  ++.++.......+  ......+..+++.|++. ++++...++.+.
T Consensus        97 ~~~~~~~~~~~~i~~~~~g~l~v~~~~~~---~--i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~  170 (300)
T 2qc5_A           97 YPLPQPDSGPYGITEGLNGDIWFTQLNGD---R--IGKLTADGTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIG  170 (300)
T ss_dssp             EECSSTTCCEEEEEECSTTCEEEEETTTT---E--EEEECTTSCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEE
T ss_pred             ecCCCCCCCCccceECCCCCEEEEccCCC---e--EEEECCCCCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEE
Confidence            22222335688999999998776643221   2  3333332222222  33446788999999987 466666667788


Q ss_pred             EEeCCCCceee-eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEE
Q 007283          172 FYEGPPFKFKL-SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT  250 (609)
Q Consensus       172 ~~~~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s  250 (609)
                      .++. .++... ....+...+..+++.++|.++++....+.+.+++. +++.....  ...+...+.++++.++|++.++
T Consensus       171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~--~~~~~~~~~~i~~d~~g~l~v~  246 (300)
T 2qc5_A          171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYD--IPTPNARPHAITAGKNSEIWFT  246 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEE--CSSTTCCEEEEEECSTTCEEEE
T ss_pred             EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEE--CCCCCCCceEEEECCCCCEEEe
Confidence            8876 343322 23344567889999999987776666778999997 44432211  1123456889999999997777


Q ss_pred             EeCCCcEEEeecc
Q 007283          251 ASADKSAKVWDIS  263 (609)
Q Consensus       251 ~s~d~~i~iwd~~  263 (609)
                      ...++.|..|+..
T Consensus       247 ~~~~~~i~~~~~~  259 (300)
T 2qc5_A          247 EWGANQIGRITND  259 (300)
T ss_dssp             ETTTTEEEEECTT
T ss_pred             ccCCCeEEEECCC
Confidence            7667899999873

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.32  E-value=1.5e-08  Score=100.35  Aligned_cols=106  Identities=9%  Similarity=-0.057  Sum_probs=71.8

Q ss_pred             eCCCeEEEEec-CCC---eEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCC
Q 007283          155 PSRPFRIATCG-EDF---LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS----------SDKKGIIYDGKTA  220 (609)
Q Consensus       155 p~~~~~i~t~~-~d~---~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~----------~d~~i~iwd~~~~  220 (609)
                      |++...+++-+ ...   .+.++|..+++....+.....+  .++|+|||+++..+.          .++.+.++|..+.
T Consensus        30 ~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~  107 (373)
T 2mad_H           30 ADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF  107 (373)
T ss_pred             CCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC
Confidence            55554444432 222   7888998888776655433333  899999999888775          3678999999887


Q ss_pred             ccccccCcC-CCC---ccceEEEEECCCCCeEEEEeC--CCcEEEeecc
Q 007283          221 DKIGELSPE-DGH---KGSVYAVSWSPDGKQVLTASA--DKSAKVWDIS  263 (609)
Q Consensus       221 ~~~~~~~~~-~~h---~~~V~~l~~spd~~~l~s~s~--d~~i~iwd~~  263 (609)
                      +.+..+... ...   ...-..+.|+|||++|+.+..  ++.|.++| .
T Consensus       108 ~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~  155 (373)
T 2mad_H          108 LPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-Q  155 (373)
T ss_pred             cEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-C
Confidence            766554321 000   112347899999999998874  47899998 6

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.26  E-value=7e-06  Score=90.37  Aligned_cols=486  Identities=8%  Similarity=0.042  Sum_probs=257.1

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCC-C---CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceee
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHA-Y---PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK   93 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~-~---~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~   93 (609)
                      ....|...++|...+.+. +.+..||..+.+-.. +..+. .   .|.++...++|++.+...  +.+..|+..+++...
T Consensus        89 ~I~~i~~d~~g~lWigT~-~Gl~~yd~~~~~f~~-~~~~~~~~~~~i~~i~~d~~g~lwi~t~--~gl~~~~~~~~~~~~  164 (795)
T 4a2l_A           89 ISRIVKTDSQGRVWIGTR-DGLSRYDEEKDIFQN-FFYEKNGKHLQVNGIEEISPEQLLISTP--EGLIMFDIKESKFID  164 (795)
T ss_dssp             CEEEEEECTTSCEEEEES-SCEEEEETTTTEEEE-ECCEETTEECCCCEEEEEETTEEEEEET--TEEEEEETTTTEEEC
T ss_pred             ceeEEEECCCCCEEEEeC-CchheeCCCCCeEEe-ccccccCCCceEEEEEECCCCCEEEEEC--CceEEEECCCCEEEe
Confidence            344777888887666655 347889986654322 22111 1   188999999999877654  458889876654211


Q ss_pred             EEEeecccc-eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEE-EecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           94 KEFRVLSGR-IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        94 ~~~~~~~~~-v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                      ......... |.++...++|...+...+ .+   +..++...+..... ...+...|.++...+++.. .+ +..+.-+.
T Consensus       165 ~~~~~~~~~~i~~i~~d~~g~lwigt~~-~G---l~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~l-wi-gt~~~Gl~  238 (795)
T 4a2l_A          165 DSFSTAMHKTIASTLYRQGDQIYIGTST-DG---LYTYSITQKTFEKVIPILGTKQIQAILQQSPTRI-WV-ATEGAGLF  238 (795)
T ss_dssp             SSSCHHHHTCCEEEEEEETTEEEEEESS-SC---EEEEETTTCCEEECC----CCCEEEEEEEETTEE-EE-EEBSSCEE
T ss_pred             ccCCCCCCcceEEEEECCCCCEEEEECC-CC---EEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCE-EE-EECCCCeE
Confidence            000001123 888888888876665422 22   22233223322111 0123456888888888763 33 33332367


Q ss_pred             EEeCCCCceeeeccC-------cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC----cCCCCccceEEEE
Q 007283          172 FYEGPPFKFKLSHRG-------HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS----PEDGHKGSVYAVS  240 (609)
Q Consensus       172 ~~~~~~~~~~~~~~~-------h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~----~~~~h~~~V~~l~  240 (609)
                      .|+....+...-...       ....|.++...++|.+. .|+.+ -+.+|+..++.......    ...-....|.++.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~  316 (795)
T 4a2l_A          239 LINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIF  316 (795)
T ss_dssp             EEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEE
T ss_pred             EEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEE
Confidence            777665443322111       23569999999998754 45555 58889877654322110    0011235799999


Q ss_pred             ECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCC-CCCc-cceEEEEEE-cCCeEEEEEcCCcEEEEeCCCCCCCc
Q 007283          241 WSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG-SGGV-DDMLVGCLW-QNDFLVIVSLGGTISIFSANDLEKSP  317 (609)
Q Consensus       241 ~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~~~~~  317 (609)
                      ..++|.+. .|+.++-|..++....   .. ..+.... .... ...+.+... .+..+.+++.++.+..|+.....  .
T Consensus       317 ~D~~g~lW-igt~~~Gl~~~~~~~~---~~-~~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~--~  389 (795)
T 4a2l_A          317 MDSQGGMW-LGTYFGGLNYYHPIRN---RF-KNIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQR--F  389 (795)
T ss_dssp             ECTTSCEE-EEESSSCEEEECGGGG---SS-EEECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCC--E
T ss_pred             EeCCcCEE-EEECCCCeEEeCCCcc---cc-eEEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCc--E
Confidence            99988754 4566677888886532   11 1221111 1111 122233332 34567778887778888754321  1


Q ss_pred             eeee---------CCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc----ccccceeEeeee-CCcEEEE
Q 007283          318 LQLS---------GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR----KENSQIKCFAAI-EEEIVTS  383 (609)
Q Consensus       318 ~~~~---------~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~  383 (609)
                      ..+.         .....|.++... .++.++..|+.++-+..++...+.......    .....+.++... .+.+..+
T Consensus       390 ~~~~~~~~~~~~~l~~~~v~~i~~d-~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwig  468 (795)
T 4a2l_A          390 TSYTLQEDESARGIGSNNIKAVYVD-EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLG  468 (795)
T ss_dssp             EEECCC------CCSCSCEEEEEEE-TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEE
T ss_pred             EEEecCCCCcccCCCCccEEEEEEc-CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEE
Confidence            1111         123467777654 334436667776778888765443222211    011123333322 2233333


Q ss_pred             eccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEE
Q 007283          384 GFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAI  463 (609)
Q Consensus       384 ~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~  463 (609)
                      .. .-+.+++.......                                 .+........ .....+.++...++|+..+
T Consensus       469 t~-~Gl~~~~~~~~~~~---------------------------------~~~~~~~~~~-~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          469 TL-SALVRFNPEQRSFT---------------------------------TIEKEKDGTP-VVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             ES-SCEEEEETTTTEEE---------------------------------ECCBCTTCCB-CCCCCEEEEEECTTCCEEE
T ss_pred             ec-CceeEEeCCCCeEE---------------------------------Eccccccccc-cCCceEEEEEECCCCCEEE
Confidence            33 22333332211000                                 0000000000 0013467788888898766


Q ss_pred             EEeCCCcEEEEEecCCeeeeeE---E-EecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe-eec-CCCCce
Q 007283          464 IGSQDGKLRVYSIRGDTLTEEA---V-LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK-NML-YHTARI  537 (609)
Q Consensus       464 ~gs~dg~i~iw~~~~~~~~~~~---~-~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~-~h~~~i  537 (609)
                      .. . +-|..|+..++.. ...   . .......|.++...++|.+.++.. . -+..||..+.....- ... .....|
T Consensus       514 gt-~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~~~~~~gl~~~~i  588 (795)
T 4a2l_A          514 GG-E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKRYNTTNGLPNNVV  588 (795)
T ss_dssp             EE-S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEEECGGGTCSCSCE
T ss_pred             Ee-C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEEeCCCCCCchhhe
Confidence            55 4 5588888876554 100   0 011335789999999998776554 3 578888766543211 111 124568


Q ss_pred             EEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          538 NCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       538 ~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      .++...++|++.++.  ++-|..|+...
T Consensus       589 ~~i~~d~~g~lWi~t--~~Gl~~~~~~~  614 (795)
T 4a2l_A          589 YGILEDSFGRLWLST--NRGISCFNPET  614 (795)
T ss_dssp             EEEEECTTSCEEEEE--TTEEEEEETTT
T ss_pred             EEEEECCCCCEEEEc--CCceEEEcCCC
Confidence            999999999876655  34577787654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.26  E-value=1.6e-10  Score=113.53  Aligned_cols=177  Identities=7%  Similarity=-0.052  Sum_probs=128.9

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCc---------eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHNDH---------VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~---------~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      +++.+++++.+.++++|+.+ .+++|+...-+         ........+.. |..++|  |+..|+++.+    ..+++
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~~~----~~l~v  110 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVSTR----NALYS  110 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEEES----SEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEEcC----CcEEE
Confidence            69999999999999999987 46679765322         11111223555 999999  9988888732    24677


Q ss_pred             EEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC
Q 007283          130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                      |+.+.-........|...+.++.+.+.  . ++++..|+.+.+|+...+....    +...|+|++|||+|  ++.|..|
T Consensus       111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          111 LDLEELSEFRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEEEETT
T ss_pred             EEchhhhccCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEEEEcC
Confidence            776655455556677777887765543  3 8888999999999988766542    45689999999999  6789999


Q ss_pred             CcEEEEeCCCCcc--ccccC------cCCCCccceEEEEECCCCCeEEEEe
Q 007283          210 KKGIIYDGKTADK--IGELS------PEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       210 ~~i~iwd~~~~~~--~~~~~------~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      |++.+|+...++.  ...+.      ...+|...|.++.|.+++.++++=+
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999998776653  22231      1114778899999999998887643

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.25  E-value=5.8e-09  Score=101.92  Aligned_cols=282  Identities=15%  Similarity=0.086  Sum_probs=167.9

Q ss_pred             EeeCCCeEEEEecC----CCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe----------CCCcEEEEeCC
Q 007283          153 FKPSRPFRIATCGE----DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS----------SDKKGIIYDGK  218 (609)
Q Consensus       153 ~~p~~~~~i~t~~~----d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~----------~d~~i~iwd~~  218 (609)
                      ..|++..++++-..    ++.+.+.|..+++.......-..+ . ++++|||+++.++.          .++.|.+||..
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            35787765655443    678999999988877665433333 3 99999999877665          36789999999


Q ss_pred             CCccccccCcCCCC----ccceEEEEECCCCCeEEEEeC--CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          219 TADKIGELSPEDGH----KGSVYAVSWSPDGKQVLTASA--DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       219 ~~~~~~~~~~~~~h----~~~V~~l~~spd~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      +.+.+..+....+.    ...-..+.|+|||++++.+..  ++.|.++|+.   .++...++...+          |   
T Consensus       118 t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~---t~~vv~tI~v~g----------~---  181 (386)
T 3sjl_D          118 TLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLE---GKAFKRMLDVPD----------C---  181 (386)
T ss_dssp             TCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETT---TTEEEEEEECCS----------E---
T ss_pred             CCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECC---CCcEEEEEECCC----------c---
Confidence            98877665321100    112346899999999888763  6899999987   344544442110          0   


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283          293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC  372 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~  372 (609)
                                                          ... .+...+.+++.+.||++.+.+....... ... ..     
T Consensus       182 ------------------------------------~~~-~P~g~~~~~~~~~DG~~~~v~~~~~g~v-~~~-~~-----  217 (386)
T 3sjl_D          182 ------------------------------------YHI-FPTAPDTFFMHCRDGSLAKVAFGTEGTP-EIT-HT-----  217 (386)
T ss_dssp             ------------------------------------EEE-EEEETTEEEEEETTSCEEEEECCSSSCC-EEE-EC-----
T ss_pred             ------------------------------------cee-ecCCCceeEEECCCCCEEEEECCCCCeE-EEe-ec-----
Confidence                                                000 1112245567777777766654321000 000 00     


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCce-e
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPV-T  451 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  451 (609)
                                     +  .++.                        .                           ..++ .
T Consensus       218 ---------------~--~~~~------------------------~---------------------------~~~~~~  229 (386)
T 3sjl_D          218 ---------------E--VFHP------------------------E---------------------------DEFLIN  229 (386)
T ss_dssp             ---------------C--CCSC------------------------T---------------------------TSCBCS
T ss_pred             ---------------c--eecc------------------------c---------------------------cccccc
Confidence                           0  0000                        0                           0000 0


Q ss_pred             EEEE-cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEe---------c-CCCceEEEEECCCCCEEEEEeC---------
Q 007283          452 ASAI-APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE---------K-HRGAVSVIRYSPDVSMFASGDV---------  511 (609)
Q Consensus       452 ~~~~-sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~---------~-h~~~i~~v~~s~~~~~l~s~s~---------  511 (609)
                      ..++ .++|+++. .+.+|+|++.|+.++.........         + ..+....++++|++..+.....         
T Consensus       230 ~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~  308 (386)
T 3sjl_D          230 HPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKT  308 (386)
T ss_dssp             CCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTS
T ss_pred             cceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCC
Confidence            1123 46776544 556899999998765421111111         0 1223345777899887776543         


Q ss_pred             -CCeEEEEEccCCceEEeeecCCCCceEEEEECCCCc-EEEEE-eCCCeEEEEEcCCCC
Q 007283          512 -NREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS-MVATG-SLDTCVIIYEIDKPA  567 (609)
Q Consensus       512 -d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~-s~D~~v~vw~~~~~~  567 (609)
                       ..+|.+.|..+.+.......+  .+++.|+|+||++ +|++. ..+++|.++|..+.+
T Consensus       309 ~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k  365 (386)
T 3sjl_D          309 ASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  365 (386)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCc
Confidence             257999998887664333233  3788999999997 66665 459999999987644

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.25  E-value=4.3e-09  Score=105.83  Aligned_cols=236  Identities=10%  Similarity=-0.007  Sum_probs=151.8

Q ss_pred             ceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceeeE
Q 007283           18 RGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSG--TVRIWGAHNDHVLKK   94 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~--~i~vWd~~~~~~~~~   94 (609)
                      .|..++++|+|+.++... ++.|.++|+.++........... .. ++|+|+|++|+.++.++  .|.+|+...+... .
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~-~  208 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAP-T  208 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCE-E
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCcee-E
Confidence            678899999998555544 47999999987766554443222 33 99999999998888766  6777777654321 1


Q ss_pred             EE----eecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE-----ecCCccE-E-EEEEeeCCCeEEEE
Q 007283           95 EF----RVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-----DGHSRRV-L-SCAFKPSRPFRIAT  163 (609)
Q Consensus        95 ~~----~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~v-~-~~~~~p~~~~~i~t  163 (609)
                      .+    ......+..++++|++.+|.. .+..  ..++.++.+.+.. ..+     .++...- . .++|+|++..++++
T Consensus       209 ~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~--~~I~~~d~~~~~~-~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          209 RIGQLGSTFSGKIGAVALDETEEWLYF-VDSN--KNFGRFNVKTQEV-TLIKQLELSGSLGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             EEEECCTTSCSCCCBCEECTTSSEEEE-ECTT--CEEEEEETTTCCE-EEEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred             EeeeccchhcCCcEEEEEeCCCCeEEE-EECC--CcEEEEECCCCCE-EEEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence            22    113356788999995545555 3332  2344445444432 222     1222222 2 89999976666777


Q ss_pred             ecCCCeEEEEeCCCCceeeeccCc---------------ccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccC
Q 007283          164 CGEDFLVNFYEGPPFKFKLSHRGH---------------SNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELS  227 (609)
Q Consensus       164 ~~~d~~i~~~~~~~~~~~~~~~~h---------------~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~  227 (609)
                      -..++.|..|+.... . ..+.++               ......++|+|+|+++++-. .+..|+.|+..++.......
T Consensus       285 d~~~~~I~~~~~~g~-~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g  362 (409)
T 3hrp_A          285 DQNLSSVYKITPDGE-C-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAG  362 (409)
T ss_dssp             ETTTTEEEEECTTCC-E-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEE
T ss_pred             eCCCCEEEEEecCCC-E-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeC
Confidence            777888888875432 1 111121               24578999999999777777 78899999966665321110


Q ss_pred             c--CC---------CCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          228 P--ED---------GHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       228 ~--~~---------~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      .  ..         ..-.....++++|+|.++++-..++.|+.+++
T Consensus       363 ~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          363 QVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             CTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             CCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            0  00         01235789999999988888888888887764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.21  E-value=3.2e-09  Score=100.43  Aligned_cols=199  Identities=10%  Similarity=-0.089  Sum_probs=133.3

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEe
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFR   97 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~   97 (609)
                      .|..+.++|+|+.++...++.+.+|+..+................++++|+|++.++...++.|.+|+..+...... ..
T Consensus        68 ~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~-~~  146 (270)
T 1rwi_B           68 QPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL-PF  146 (270)
T ss_dssp             SCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC-CC
T ss_pred             CcceeEECCCCCEEEEcCCCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee-cc
Confidence            56678899999866655567899999876554332222335689999999999888877888999997654332111 11


Q ss_pred             ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC
Q 007283           98 VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP  177 (609)
Q Consensus        98 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~  177 (609)
                      .....+..++++|+|+.+++...+.   .+..++.+..........+...+..++++|++. ++++...++.+..|+...
T Consensus       147 ~~~~~p~~i~~~~~g~l~v~~~~~~---~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~  222 (270)
T 1rwi_B          147 TGLNDPDGVAVDNSGNVYVTDTDNN---RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGS  222 (270)
T ss_dssp             CSCCSCCCEEECTTCCEEEEEGGGT---EEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTC
T ss_pred             ccCCCceeEEEeCCCCEEEEECCCC---EEEEEecCCCceEeecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCC
Confidence            1223578899999998665543221   234444333332222223336688999999985 566666778889998755


Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD  221 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~  221 (609)
                      .........+...+.+++++|+|+++++...++.|.+++....+
T Consensus       223 ~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          223 TTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             SCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             CcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            43333333344678999999999988888889999999866543

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.19  E-value=1.4e-05  Score=87.83  Aligned_cols=516  Identities=8%  Similarity=0.040  Sum_probs=270.4

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCcccccccc--------CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCC
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGE--------HAYPATVARFSPNGEWIASADVSGTVRIWGAHND   89 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~--------h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~   89 (609)
                      ....|..+++|..-+.+. .-+..||..+   ...+..        -...|.++...++|++-+...  +.+..||..+.
T Consensus        44 ~v~~I~qD~~G~lWigT~-~GL~ryDG~~---f~~~~~~~~~~~~l~~n~I~~i~~d~~g~lWigT~--~Gl~~yd~~~~  117 (795)
T 4a2l_A           44 TVFSIDQDKRGNMWFATY-DGVNKYDGYA---FTVYQHNEDDPNSIANDISRIVKTDSQGRVWIGTR--DGLSRYDEEKD  117 (795)
T ss_dssp             CEEEEEECTTSCEEEEET-TEEEEECSSC---EEEECCCTTCTTSCSCSCEEEEEECTTSCEEEEES--SCEEEEETTTT
T ss_pred             eeEEEEEcCCCCEEEeec-CcCcccCCCc---eEEEeCCCCCCCcccccceeEEEECCCCCEEEEeC--CchheeCCCCC
Confidence            455788888885433333 3466777533   222221        134699999999999877553  44888998765


Q ss_pred             ceeeEEEeecc-c---ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe-cC-Ccc-EEEEEEeeCCCeEEE
Q 007283           90 HVLKKEFRVLS-G---RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-GH-SRR-VLSCAFKPSRPFRIA  162 (609)
Q Consensus        90 ~~~~~~~~~~~-~---~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h-~~~-v~~~~~~p~~~~~i~  162 (609)
                      +..  .+.... .   .|.++...++|...+++.  .+   +..++-+++. ...+. ++ ... |.++...+++.. .+
T Consensus       118 ~f~--~~~~~~~~~~~~i~~i~~d~~g~lwi~t~--~g---l~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~g~l-wi  188 (795)
T 4a2l_A          118 IFQ--NFFYEKNGKHLQVNGIEEISPEQLLISTP--EG---LIMFDIKESK-FIDDSFSTAMHKTIASTLYRQGDQI-YI  188 (795)
T ss_dssp             EEE--EECCEETTEECCCCEEEEEETTEEEEEET--TE---EEEEETTTTE-EECSSSCHHHHTCCEEEEEEETTEE-EE
T ss_pred             eEE--eccccccCCCceEEEEEECCCCCEEEEEC--Cc---eEEEECCCCE-EEeccCCCCCCcceEEEEECCCCCE-EE
Confidence            432  122111 1   188888888987666543  11   2223322221 11111 11 123 888888888753 33


Q ss_pred             EecCCCeEEEEeCCCCceeeec-cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCc----CCCCccceE
Q 007283          163 TCGEDFLVNFYEGPPFKFKLSH-RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSP----EDGHKGSVY  237 (609)
Q Consensus       163 t~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~h~~~V~  237 (609)
                       +..++-+..|+....+..... ..+...|.++...++|.++ .++.++.+..||..+++.......    ..-....|.
T Consensus       189 -gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~  266 (795)
T 4a2l_A          189 -GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIW-VATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIR  266 (795)
T ss_dssp             -EESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEE-EEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEE
T ss_pred             -EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEE-EEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEE
Confidence             444434677776554443221 1234568888888888654 455555588899776543221110    001235699


Q ss_pred             EEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCC--CCCcc-ceEEEEEE-cCCeEEEEEcCCcEEEEeCCCC
Q 007283          238 AVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG--SGGVD-DMLVGCLW-QNDFLVIVSLGGTISIFSANDL  313 (609)
Q Consensus       238 ~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~-~~~~~~~~~~~g~i~~~~~~~~  313 (609)
                      ++...++|.+.+.. .+ -|.+|+...   ++ ...+....  ..... ..+..... ....+.+++.++.+..++....
T Consensus       267 ~i~~d~~g~lWigt-~~-Gl~~~~~~~---~~-~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lWigt~~~Gl~~~~~~~~  340 (795)
T 4a2l_A          267 SLAMDSQNRLWIGT-FN-DLNIYHEGT---DS-FASYSSNPVENGSLSQRSVRSIFMDSQGGMWLGTYFGGLNYYHPIRN  340 (795)
T ss_dssp             EEEECTTSCEEEEE-SS-CEEEEETTT---TE-EEEECCCTTSTTSCSSSCEEEEEECTTSCEEEEESSSCEEEECGGGG
T ss_pred             EEEEcCCCCEEEEe-CC-hhheEcCCC---Ce-EEEEecCCCCCCCCCCCcEEEEEEeCCcCEEEEECCCCeEEeCCCcc
Confidence            99999888765543 44 588888652   22 22222111  11111 12222222 3456777777777777764321


Q ss_pred             CCCceeee-------CCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccc--------cccceeEeeee-C
Q 007283          314 EKSPLQLS-------GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK--------ENSQIKCFAAI-E  377 (609)
Q Consensus       314 ~~~~~~~~-------~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~--------~~~~~~~~~~~-~  377 (609)
                      .  ...+.       .....|.++.... + ..+..|+.++-+..++...+........        ....+.++..+ .
T Consensus       341 ~--~~~~~~~~~~~~l~~~~V~~i~~d~-~-g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~  416 (795)
T 4a2l_A          341 R--FKNIRNIPYKNSLSDNVVSCIVEDK-D-KNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEK  416 (795)
T ss_dssp             S--SEEECCCTTSSSCSCSSEEEEEECT-T-SCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETT
T ss_pred             c--ceEEcCCCCCCCCCCCeeEEEEECC-C-CCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCC
Confidence            1  11110       1234577776533 3 3456677777788887654322221110        01223333332 3


Q ss_pred             Cc-EEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          378 EE-IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       378 ~~-~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                      +. +..+..++-+.+++........                                 +.....  . .....+.++...
T Consensus       417 g~~lWigt~~~Gl~~~d~~~~~~~~---------------------------------~~~~~~--~-l~~~~v~~i~~d  460 (795)
T 4a2l_A          417 KSLVYIGTHAGGLSILHRNSGQVEN---------------------------------FNQRNS--Q-LVNENVYAILPD  460 (795)
T ss_dssp             TTEEEEEETTTEEEEEETTTCCEEE---------------------------------ECTTTS--C-CSCSCEEEEEEC
T ss_pred             CCEEEEEeCcCceeEEeCCCCcEEE---------------------------------eecCCC--C-cCCCeeEEEEEC
Confidence            33 4555444444444432211000                                 000000  0 011346777788


Q ss_pred             CCCCEEEEEeCCCcEEEEEecCCeeeeeEEE----ecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe----
Q 007283          457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL----EKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK----  528 (609)
Q Consensus       457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~----~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~----  528 (609)
                      ++|.+++.. . +-|..|+..++........    .-....|.++...++|.+.+...  +-+..||..+......    
T Consensus       461 ~~g~lwigt-~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~~~~~~~~  536 (795)
T 4a2l_A          461 GEGNLWLGT-L-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDIQKASILP  536 (795)
T ss_dssp             SSSCEEEEE-S-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEEEECCCSC
T ss_pred             CCCCEEEEe-c-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeEEEecCCC
Confidence            888865554 4 4588888766554321110    11235789999999998777654  4588888765543111    


Q ss_pred             eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEec--c-ccCCeEEEEEc-CCCeEEEEeCCCcEEEE
Q 007283          529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKG--A-HLGGVYGLAFT-DEHSVVSSGEDACVRVW  604 (609)
Q Consensus       529 ~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~--~-h~~~v~~~~~s-~~~~l~s~s~D~~i~~W  604 (609)
                      ....+...|.++...++|++.++. .. -|..||.....  ......  + ....|.++... +++..+++ . +-+..|
T Consensus       537 ~~~l~~~~i~~i~~d~~g~lWigT-~~-Gl~~~d~~~~~--~~~~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~  610 (795)
T 4a2l_A          537 VSNVTKLFTNCIYEASNGIIWVGT-RE-GFYCFNEKDKQ--IKRYNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCF  610 (795)
T ss_dssp             SCGGGGSCEEEEEECTTSCEEEEE-SS-CEEEEETTTTE--EEEECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEE
T ss_pred             CCCCCCCeeEEEEECCCCCEEEEe-CC-CceeECCCCCc--EEEeCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEE
Confidence            001244579999999999866544 33 47778865422  111111  1 23458888877 55655554 3 345555


Q ss_pred             Ec
Q 007283          605 RL  606 (609)
Q Consensus       605 ~~  606 (609)
                      +.
T Consensus       611 ~~  612 (795)
T 4a2l_A          611 NP  612 (795)
T ss_dssp             ET
T ss_pred             cC
Confidence            43

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.19  E-value=6.9e-08  Score=93.41  Aligned_cols=115  Identities=13%  Similarity=0.179  Sum_probs=79.8

Q ss_pred             eEEEEc----CCCCEEE-EEeCCCcEEEEEec-CCeeeeeE---EEecCC-CceEEEEECCCCCEEEEEeCCCeEEEEEc
Q 007283          451 TASAIA----PDGSEAI-IGSQDGKLRVYSIR-GDTLTEEA---VLEKHR-GAVSVIRYSPDVSMFASGDVNREAIVWDR  520 (609)
Q Consensus       451 ~~~~~s----p~g~~l~-~gs~dg~i~iw~~~-~~~~~~~~---~~~~h~-~~i~~v~~s~~~~~l~s~s~d~~v~iwd~  520 (609)
                      ..++++    |+|+.+. +...++.|++|+.+ .+.+....   .+..+. +.+..++++++|.+.++...++.|.+||.
T Consensus       175 ~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~  254 (314)
T 1pjx_A          175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             ceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcC
Confidence            345666    8886544 44567889999876 34332211   223333 56888999999999998888899999997


Q ss_pred             cCCceEEeeecCCCCceEEEEECCCCcE-EEEEeCCCeEEEEEcCCC
Q 007283          521 VSREVKLKNMLYHTARINCLAWSPNNSM-VATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       521 ~~~~~~~~~~~~h~~~i~~l~~s~d~~~-l~s~s~D~~v~vw~~~~~  566 (609)
                      .+++.. ..+..+...+.+++|+||+++ +++...++.|..|++...
T Consensus       255 ~~g~~~-~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~  300 (314)
T 1pjx_A          255 DGGQPK-MRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             TCBSCS-EEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred             CCCcEe-EEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence            644322 223445678999999999994 455566788999998643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.19  E-value=3.7e-08  Score=94.52  Aligned_cols=232  Identities=4%  Similarity=-0.092  Sum_probs=151.4

Q ss_pred             CceeEEeecCCCCeEEEeC-CCEEEEEeCCCCcccc-ccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeE
Q 007283           17 GRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVS-IYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKK   94 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~-~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~   94 (609)
                      ..+..+..+++|+..+... ++.+..+|.. ++... .+......+..++++|+|++.++...++.|..++.. ++....
T Consensus        62 ~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~  139 (300)
T 2qc5_A           62 AKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEY  139 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEE
T ss_pred             CcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEc
Confidence            4677888999998766655 4789999987 44322 122234568999999999998888778899999986 443322


Q ss_pred             EEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE--ecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           95 EFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF--DGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        95 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      .+......+..+++.|+|+.+++...+.   .  ++.++.......+  ..+...+..++++|++.. +++....+.+..
T Consensus       140 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~---~--i~~~~~~g~~~~~~~~~~~~~~~~i~~d~~g~l-~v~~~~~~~i~~  213 (300)
T 2qc5_A          140 DLPNKGSYPAFITLGSDNALWFTENQNN---S--IGRITNTGKLEEYPLPTNAAAPVGITSGNDGAL-WFVEIMGNKIGR  213 (300)
T ss_dssp             ECSSTTCCEEEEEECTTSSEEEEETTTT---E--EEEECTTCCEEEEECSSTTCCEEEEEECTTSSE-EEEETTTTEEEE
T ss_pred             cCCCCCCCceeEEECCCCCEEEEecCCC---e--EEEECCCCcEEEeeCCCCCCCcceEEECCCCCE-EEEccCCCEEEE
Confidence            2222345688999999998555543221   2  3334432222223  234456889999998863 555555667888


Q ss_pred             EeCCCCceee-eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283          173 YEGPPFKFKL-SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       173 ~~~~~~~~~~-~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                      ++. .++... ....+...+.+++++++|+++++...++.|..++. +++.. .+. .......+.++.+.++|++.++.
T Consensus       214 ~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~-~~~~~~~~~~i~~~~~g~l~v~~  289 (300)
T 2qc5_A          214 ITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ-LQTENAEPHGITFGKDGSVWFAL  289 (300)
T ss_dssp             ECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE-CCSTTCCCCCEEECTTSCEEEEC
T ss_pred             EcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE-CCccCCccceeEeCCCCCEEEEc
Confidence            886 333322 23344567889999999987666666789999997 34322 221 11234568899999999866665


Q ss_pred             eCCCcEEEeec
Q 007283          252 SADKSAKVWDI  262 (609)
Q Consensus       252 s~d~~i~iwd~  262 (609)
                      . . .|..+|.
T Consensus       290 ~-~-~i~~~~p  298 (300)
T 2qc5_A          290 K-C-KIGKLNL  298 (300)
T ss_dssp             S-S-EEEEEEE
T ss_pred             c-C-ceEEeCC
Confidence            4 4 6666664

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.18  E-value=3.1e-09  Score=115.01  Aligned_cols=237  Identities=9%  Similarity=-0.029  Sum_probs=150.3

Q ss_pred             eEEeecCCCCeEEEe---CC---CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCc-------------
Q 007283           20 ILISGHPKSNSILYT---NG---RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGT-------------   80 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~---~~---~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~-------------   80 (609)
                      ..++++|||+.|+|.   .|   ..++++|+.+++.+.. ..+......++|+ ||+.|+.++.++.             
T Consensus       132 ~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~  209 (693)
T 3iuj_A          132 DQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHK  209 (693)
T ss_dssp             EEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCE
T ss_pred             EEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcE
Confidence            366899999999986   23   4789999998875432 1111113577899 9999998877643             


Q ss_pred             EEEEcCCCCce---eeEEEee-cccceeEEEECCCCCEEEEEEC-CCCcceEEEEEcCCCC-eeEEEecCCccEEEEEEe
Q 007283           81 VRIWGAHNDHV---LKKEFRV-LSGRIDDLQWSPDGLRIVACGD-GKGKSLVRAFMWDSGT-NVGEFDGHSRRVLSCAFK  154 (609)
Q Consensus        81 i~vWd~~~~~~---~~~~~~~-~~~~v~~~~~spdg~~l~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~  154 (609)
                      |++|++.++..   +...... +...+..+.|||||++|+.... +.....+.+++.+.+. ....+..+....... ++
T Consensus       210 v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~  288 (693)
T 3iuj_A          210 VYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VD  288 (693)
T ss_dssp             EEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EE
T ss_pred             EEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-Ee
Confidence            99999877542   2111122 2334678999999998876553 2222244455554442 345566666655554 66


Q ss_pred             eCCCeEEEEecCC---CeEEEEeCCCCce--eeeccCcccceEEEEEcCCCCEEEEEeC-CC--cEEEEeCCCCcccccc
Q 007283          155 PSRPFRIATCGED---FLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDGSKFISVSS-DK--KGIIYDGKTADKIGEL  226 (609)
Q Consensus       155 p~~~~~i~t~~~d---~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~-d~--~i~iwd~~~~~~~~~~  226 (609)
                      +++..+++....+   +.+..++......  ...+..|...+.  .|+++++.|+.... ++  .+.+|+...+. ...+
T Consensus       289 ~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~-~~~l  365 (693)
T 3iuj_A          289 NKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKR-VREV  365 (693)
T ss_dssp             EETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCE-EEEE
T ss_pred             ccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCe-eEEe
Confidence            6666555555544   5777888765432  123444555554  89999998876654 43  67888876443 3333


Q ss_pred             CcCCCCccceEEEEECCCCCeEEEEeCC----CcEEEeeccc
Q 007283          227 SPEDGHKGSVYAVSWSPDGKQVLTASAD----KSAKVWDISE  264 (609)
Q Consensus       227 ~~~~~h~~~V~~l~~spd~~~l~s~s~d----~~i~iwd~~~  264 (609)
                      .  ....+.+..+.++|++..++....+    +++..||+..
T Consensus       366 ~--~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~  405 (693)
T 3iuj_A          366 A--LPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKS  405 (693)
T ss_dssp             C--CSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTT
T ss_pred             e--cCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCC
Confidence            2  1234567888889988876655444    7899998863

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.16  E-value=1.7e-08  Score=100.51  Aligned_cols=280  Identities=15%  Similarity=0.075  Sum_probs=165.6

Q ss_pred             eCCCeEEEEecCC----CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCC
Q 007283          155 PSRPFRIATCGED----FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS----------SDKKGIIYDGKTA  220 (609)
Q Consensus       155 p~~~~~i~t~~~d----~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~----------~d~~i~iwd~~~~  220 (609)
                      |+...++++...+    +.+.+.|..+.+....+.--..+  .+.++|||++|.++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            4444445555444    68999999998887665433344  799999999877765          3678999999998


Q ss_pred             ccccccCcC-CC---CccceEEEEECCCCCeEEEEeC--CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCC
Q 007283          221 DKIGELSPE-DG---HKGSVYAVSWSPDGKQVLTASA--DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND  294 (609)
Q Consensus       221 ~~~~~~~~~-~~---h~~~V~~l~~spd~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (609)
                      +.+..+... ..   ....-..+.|+|||++++.+..  ++.|.+.|+..   .+....+...+                
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t---~kvv~~I~v~g----------------  220 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEG---KTFDRMLDVPD----------------  220 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTT---TEEEEEEECCS----------------
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCC---CeEEEEEEcCC----------------
Confidence            877665321 00   0112346899999999988764  57899999863   44444332110                


Q ss_pred             eEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEee
Q 007283          295 FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA  374 (609)
Q Consensus       295 ~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~  374 (609)
                                                        +....+..+..+++.+.||++.+.+...+.....            
T Consensus       221 ----------------------------------~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~------------  254 (426)
T 3c75_H          221 ----------------------------------CYHIFPASPTVFYMNCRDGSLARVDFADGETKVT------------  254 (426)
T ss_dssp             ----------------------------------EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEE------------
T ss_pred             ----------------------------------ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE------------
Confidence                                              0000111123455555666655443311100000            


Q ss_pred             eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCc-eeEE
Q 007283          375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFP-VTAS  453 (609)
Q Consensus       375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  453 (609)
                              .    . ..++.             .                                      ..+ ....
T Consensus       255 --------~----~-~~~~v-------------~--------------------------------------~~p~~~~~  270 (426)
T 3c75_H          255 --------N----T-EVFHT-------------E--------------------------------------DELLINHP  270 (426)
T ss_dssp             --------E----C-CCCSC-------------T--------------------------------------TSCBCSCC
T ss_pred             --------e----e-eeecc-------------C--------------------------------------CCceeeEe
Confidence                    0    0 00000             0                                      000 1123


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEe---c-------CCCceEEEEECCCCCEEEEEeC----------CC
Q 007283          454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE---K-------HRGAVSVIRYSPDVSMFASGDV----------NR  513 (609)
Q Consensus       454 ~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~---~-------h~~~i~~v~~s~~~~~l~s~s~----------d~  513 (609)
                      .+.|++..++..+..+.|.+.|+.++.........   .       .......++++||+..+.+...          ++
T Consensus       271 ~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~  350 (426)
T 3c75_H          271 AFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASR  350 (426)
T ss_dssp             EECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEE
T ss_pred             eecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCC
Confidence            56788887777778889999998654421111110   0       0112223689999876665532          35


Q ss_pred             eEEEEEccCCceEEeeecCCCCceEEEEECCCCc-EEEEEe-CCCeEEEEEcCCCC
Q 007283          514 EAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS-MVATGS-LDTCVIIYEIDKPA  567 (609)
Q Consensus       514 ~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~-~l~s~s-~D~~v~vw~~~~~~  567 (609)
                      +|.+.|..+.+.......  .....+++|+||++ +++++. .+++|.|+|..+.+
T Consensus       351 ~VsVID~~T~kvv~~I~v--g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~k  404 (426)
T 3c75_H          351 FVVVLNAETGERINKIEL--GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGE  404 (426)
T ss_dssp             EEEEEETTTCCEEEEEEE--EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             EEEEEECCCCeEEEEEEC--CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCC
Confidence            799999887765332211  22578999999999 888888 59999999998654

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.15  E-value=6.6e-09  Score=103.50  Aligned_cols=237  Identities=9%  Similarity=0.077  Sum_probs=144.3

Q ss_pred             CCCCeEEEeCC------CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe----------CCCcEEEEcCCCC
Q 007283           26 PKSNSILYTNG------RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD----------VSGTVRIWGAHND   89 (609)
Q Consensus        26 ~~~~~l~~~~~------~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~----------~d~~i~vWd~~~~   89 (609)
                      |++..++..+.      +.+.++|+.+.+.+..+..-..+  .+++||||++|..++          .+++|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            45555544433      58999999998887666533445  899999999887665          4678999999987


Q ss_pred             ceeeEEEeec-------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCc-cE------EEEEEee
Q 007283           90 HVLKKEFRVL-------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR-RV------LSCAFKP  155 (609)
Q Consensus        90 ~~~~~~~~~~-------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v------~~~~~~p  155 (609)
                      +... ++..-       ......++|+|||++|.++.... ...+.+.+..+.+.+..+.--.. .+      .-+++.+
T Consensus       160 ~vv~-~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~-~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          160 LPIA-DIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSP-APAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCR  237 (426)
T ss_dssp             CEEE-EEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSS-SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEET
T ss_pred             cEEE-EEECCCccccccCCCcceEEEcCCCCEEEEEecCC-CCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcC
Confidence            7543 23321       12356789999999999876321 22456677777666655542110 00      0133445


Q ss_pred             CCCeEEEEecCCCe-------------------------------------EEEEeCCCCcee--ee--cc-------C-
Q 007283          156 SRPFRIATCGEDFL-------------------------------------VNFYEGPPFKFK--LS--HR-------G-  186 (609)
Q Consensus       156 ~~~~~i~t~~~d~~-------------------------------------i~~~~~~~~~~~--~~--~~-------~-  186 (609)
                      ++...++.. .++.                                     +.+.|.......  ..  ..       + 
T Consensus       238 dG~~~~V~~-~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~  316 (426)
T 3c75_H          238 DGSLARVDF-ADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDW  316 (426)
T ss_dssp             TSSEEEEEC-CTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTE
T ss_pred             CCCEEEEEC-CCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeecccccccccc
Confidence            554333322 2221                                     111111100000  00  00       0 


Q ss_pred             cccceEEEEEcCCCCEEEEEeC----------CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEe-CC
Q 007283          187 HSNFVNCVRFSPDGSKFISVSS----------DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTAS-AD  254 (609)
Q Consensus       187 h~~~v~~l~~s~dg~~l~s~~~----------d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s-~d  254 (609)
                      .......++|+||++++.++..          ++.+.+.|..+.+.+.++..    .....++.|+|||+ ++++.. .+
T Consensus       317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s  392 (426)
T 3c75_H          317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGT  392 (426)
T ss_dssp             EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTT
T ss_pred             ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCC
Confidence            0011122689999887665532          35799999999998877742    22478899999999 888877 58


Q ss_pred             CcEEEeecccCCCCceEEEe
Q 007283          255 KSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       255 ~~i~iwd~~~~~~~~~~~~~  274 (609)
                      +.|.++|+.   ..+.++++
T Consensus       393 ~~VsVID~~---t~kvv~tI  409 (426)
T 3c75_H          393 QTLHIYDAA---TGEELRSV  409 (426)
T ss_dssp             TEEEEEETT---TCCEEEEE
T ss_pred             CeEEEEECC---CCCEEEEe
Confidence            999999987   45666655

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.11  E-value=6e-09  Score=112.78  Aligned_cols=200  Identities=10%  Similarity=0.138  Sum_probs=126.1

Q ss_pred             cCCCCcEEEEECCCCCEEEE-----EeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCC------
Q 007283           55 EHAYPATVARFSPNGEWIAS-----ADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKG------  123 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~las-----~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~------  123 (609)
                      +|...+..++|||||++||-     |+.+.+|++||+.+++.+...+.  ......++|+ ||+.|+.+..+..      
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~--~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLK--DVKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEE--EEESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccC--CceeccEEEe-CCCEEEEEEecCccccccc
Confidence            45567889999999999983     33335899999999875432222  1124678999 9999998876532      


Q ss_pred             --cceEEEEEcCCCCe----eEEE--ec-CCccEEEEEEeeCCCeEEEEecC---CCeEEEEeCCCCc-eeeeccCcccc
Q 007283          124 --KSLVRAFMWDSGTN----VGEF--DG-HSRRVLSCAFKPSRPFRIATCGE---DFLVNFYEGPPFK-FKLSHRGHSNF  190 (609)
Q Consensus       124 --~~~~~~~~~~~~~~----~~~~--~~-h~~~v~~~~~~p~~~~~i~t~~~---d~~i~~~~~~~~~-~~~~~~~h~~~  190 (609)
                        ..--+++.|+.+..    ...+  .. |...+.++.++|++..++++.+.   ...+.+++..... ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence              11123455543321    1222  23 44557889999999976665543   2478888865442 22233444444


Q ss_pred             eEEEEEcCCCCEEEEEeC----CCcEEEEeCCCCcc--ccccCcCCCCccceEEEEECCCCCeEEEEeCCC---cEEEee
Q 007283          191 VNCVRFSPDGSKFISVSS----DKKGIIYDGKTADK--IGELSPEDGHKGSVYAVSWSPDGKQVLTASADK---SAKVWD  261 (609)
Q Consensus       191 v~~l~~s~dg~~l~s~~~----d~~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~---~i~iwd  261 (609)
                      .... ++++|..|+..+.    .+.+..++..++..  +..+.   .|...+.  .|+|++++|+....++   .|++|+
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~---~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d  356 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI---PERQQVL--TVHSGSGYLFAEYMVDATARVEQFD  356 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE---CCCSSCE--EEEEETTEEEEEEEETTEEEEEEEC
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEe---cCCCCEE--EEEEECCEEEEEEEECCeeEEEEEE
Confidence            4444 6777776655543    25788899877653  23332   3444454  8999999887776544   688888


Q ss_pred             cc
Q 007283          262 IS  263 (609)
Q Consensus       262 ~~  263 (609)
                      +.
T Consensus       357 ~~  358 (693)
T 3iuj_A          357 YE  358 (693)
T ss_dssp             TT
T ss_pred             CC
Confidence            75

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.11  E-value=5.9e-08  Score=97.50  Aligned_cols=198  Identities=11%  Similarity=-0.012  Sum_probs=128.0

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCee
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV  138 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (609)
                      ....++|+|+|+++++...++.|++||..++... ..... ..... ++|+|+++.|+++..+... .+..++.+.+...
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~-~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~-~I~~~d~~~~~~~  207 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVT-TVHPG-FKGGK-PAVTKDKQRVYSIGWEGTH-TVYVYMKASGWAP  207 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEE-EEEET-CCBCB-CEECTTSSEEEEEBSSTTC-EEEEEEGGGTTCE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEE-Eeecc-CCCCc-eeEecCCCcEEEEecCCCc-eEEEEEcCCCcee
Confidence            5778999999998888888899999999876532 22222 23334 9999999988877653322 2333333333322


Q ss_pred             EEE---ec-CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee----ccCcccce--EEEEEcCC-CCEEEEEe
Q 007283          139 GEF---DG-HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS----HRGHSNFV--NCVRFSPD-GSKFISVS  207 (609)
Q Consensus       139 ~~~---~~-h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~----~~~h~~~v--~~l~~s~d-g~~l~s~~  207 (609)
                      ..+   .. ....+.+++++|++..+++ +..++.+..|+.........    ..++...-  +.++|+|+ +.++++-.
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            333   12 4456788999996554444 66688899998766543322    22332222  38999995 65666666


Q ss_pred             CCCcEEEEeCCCCccccccCcC---CC---------CccceEEEEECCCCCeEEEEe-CCCcEEEeecc
Q 007283          208 SDKKGIIYDGKTADKIGELSPE---DG---------HKGSVYAVSWSPDGKQVLTAS-ADKSAKVWDIS  263 (609)
Q Consensus       208 ~d~~i~iwd~~~~~~~~~~~~~---~~---------h~~~V~~l~~spd~~~l~s~s-~d~~i~iwd~~  263 (609)
                      .++.|..|+....  +..+.-.   .+         .-.....++++|+|+++++-+ .++.|+.|++.
T Consensus       287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~  353 (409)
T 3hrp_A          287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDIL  353 (409)
T ss_dssp             TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETT
T ss_pred             CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECC
Confidence            7788999986532  1111000   01         013468999999999888888 88999999964

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.08  E-value=6.3e-08  Score=94.60  Aligned_cols=222  Identities=13%  Similarity=0.081  Sum_probs=133.6

Q ss_pred             EeecCCCCeEEEeC------CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe----------CCCcEEEEc
Q 007283           22 ISGHPKSNSILYTN------GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD----------VSGTVRIWG   85 (609)
Q Consensus        22 ~~~~~~~~~l~~~~------~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~----------~d~~i~vWd   85 (609)
                      ....|++..++-.+      .+.+.++|..+.+.+..+..-..+  .+++||||++|..++          .+++|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            44568887765553      358999999998887666543444  499999999887654          367899999


Q ss_pred             CCCCceeeEEEeecc-------cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCC
Q 007283           86 AHNDHVLKKEFRVLS-------GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRP  158 (609)
Q Consensus        86 ~~~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  158 (609)
                      ..+.+.... +....       .....++|+|||++|.+..... ...+.+++..+.+.+..+.-..  . ... .|.+.
T Consensus       116 ~~t~~v~~~-I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~-~~~VsVID~~t~~vv~tI~v~g--~-~~~-~P~g~  189 (386)
T 3sjl_D          116 PVTLLPTAD-IELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-APAVGVVDLEGKAFKRMLDVPD--C-YHI-FPTAP  189 (386)
T ss_dssp             TTTCCEEEE-EEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS-SCEEEEEETTTTEEEEEEECCS--E-EEE-EEEET
T ss_pred             CCCCeEEEE-EECCCccccccCCCCceEEEcCCCCEEEEEEcCC-CCeEEEEECCCCcEEEEEECCC--c-cee-ecCCC
Confidence            998775433 33221       1356799999999988875321 1245667777777666664211  1 122 24444


Q ss_pred             eEEEEecCCCeEEEEeCCC-CceeeeccCc----ccce-EEEEEc-CCCCEEEEEeCCCcEEEEeCCCCc--cccccCcC
Q 007283          159 FRIATCGEDFLVNFYEGPP-FKFKLSHRGH----SNFV-NCVRFS-PDGSKFISVSSDKKGIIYDGKTAD--KIGELSPE  229 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~-~~~~~~~~~h----~~~v-~~l~~s-~dg~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~  229 (609)
                      ..+++.+.|+.+.+.+..+ ++.......+    ..++ ....|. ++|+ ++..+.++++.+.|..+..  .+..+...
T Consensus       190 ~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~-~~~vs~~g~V~v~d~~~~~~~v~~~~~~~  268 (386)
T 3sjl_D          190 DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGR-LVWPTYTGKIHQIDLSSGDAKFLPAVEAL  268 (386)
T ss_dssp             TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTE-EEEEBTTSEEEEEECTTSSCEECCCEESS
T ss_pred             ceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCc-EEEEeCCCEEEEEECCCCcceeecceecc
Confidence            3455666677777777654 4432111111    1222 124564 6775 4457778999999986553  22222100


Q ss_pred             ------CC-CccceEEEEECCCCCeEEEEe
Q 007283          230 ------DG-HKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       230 ------~~-h~~~V~~l~~spd~~~l~s~s  252 (609)
                            .+ ..+....++++|+++.++..-
T Consensus       269 ~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~  298 (386)
T 3sjl_D          269 TEAERADGWRPGGWQQVAYHRALDRIYLLV  298 (386)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             ccccccccccCCCcceeeECCCCCeEEEEe
Confidence                  00 123344577788888777654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.07  E-value=4.4e-09  Score=103.22  Aligned_cols=172  Identities=8%  Similarity=-0.020  Sum_probs=124.1

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCc----------cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCC
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPL----------QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAH   87 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~----------~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~   87 (609)
                      +...++.+++...++.+++..+++|++.+.+          +......+.. |++++|  ||++|+.+ .++.|++||+.
T Consensus        39 ~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~  114 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE  114 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS
T ss_pred             cccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch
Confidence            4568999999988888888889999976543          1112334666 999999  99999998 88999999987


Q ss_pred             CCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC
Q 007283           88 NDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED  167 (609)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d  167 (609)
                      +.. .......+..++..+.+.+..  ++++..+.   .+.+|++..+....    +...|.+++|+|+|   ++.|..|
T Consensus       115 sl~-~~~~~~~~~~~v~~i~~~~p~--~av~~~dG---~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG---~~vg~~d  181 (388)
T 1xip_A          115 ELS-EFRTVTSFEKPVFQLKNVNNT--LVILNSVN---DLSALDLRTKSTKQ----LAQNVTSFDVTNSQ---LAVLLKD  181 (388)
T ss_dssp             STT-CEEEEEECSSCEEEEEECSSE--EEEEETTS---EEEEEETTTCCEEE----EEESEEEEEECSSE---EEEEETT
T ss_pred             hhh-ccCccceeecceeeEEecCCC--EEEEECCC---CEEEEEccCCcccc----ccCCceEEEEcCCc---eEEEEcC
Confidence            654 233455667778888777653  55554332   35566665544322    45689999999998   5678889


Q ss_pred             CeEEEEeCCCCce--eeec------c---CcccceEEEEEcCCCCEEEEE
Q 007283          168 FLVNFYEGPPFKF--KLSH------R---GHSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       168 ~~i~~~~~~~~~~--~~~~------~---~h~~~v~~l~~s~dg~~l~s~  206 (609)
                      +.+++|+.+..+.  ...+      .   +|...|.++.|.+++.++++=
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y  231 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  231 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEE
Confidence            9999997665553  3333      2   477889999999999877753

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.05  E-value=4.9e-08  Score=94.13  Aligned_cols=221  Identities=8%  Similarity=0.035  Sum_probs=137.6

Q ss_pred             EEeecCCCCeEEEe--CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee
Q 007283           21 LISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV   98 (609)
Q Consensus        21 ~~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~   98 (609)
                      ...++|+|+.|++.  .++.+..|+. ++.. ..+..+...+..++++|+|+++++...++.|.+|+.+ ++..  .+..
T Consensus        49 gp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~-~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~--~~~~  123 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV-DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH--LLVG  123 (305)
T ss_dssp             EEEEEGGGTEEEEEETTTTEEEEEET-TSCE-EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE--EEEC
T ss_pred             CCeEeCCCCEEEEEECCCCEEEEEeC-CCCE-EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE--EEEe
Confidence            46778999866555  3578889988 4443 3455566779999999999988877777889999975 4421  1211


Q ss_pred             c-----ccceeEEEECCCCCEEEEE---ECCC---------CcceEEEEEcCC--CCeeEEEecCCccEEEEEEeeCCCe
Q 007283           99 L-----SGRIDDLQWSPDGLRIVAC---GDGK---------GKSLVRAFMWDS--GTNVGEFDGHSRRVLSCAFKPSRPF  159 (609)
Q Consensus        99 ~-----~~~v~~~~~spdg~~l~~~---~~~~---------~~~~~~~~~~~~--~~~~~~~~~h~~~v~~~~~~p~~~~  159 (609)
                      .     ...+..++++|||..+++-   |...         ......++.++.  ++. ..+. .......++|+|++..
T Consensus       124 ~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~-~~~~-~~~~p~gl~~spdg~~  201 (305)
T 3dr2_A          124 RYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPL-QRMA-DLDHPNGLAFSPDEQT  201 (305)
T ss_dssp             EETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCC-EEEE-EESSEEEEEECTTSSE
T ss_pred             ccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcE-EEEe-cCCCCcceEEcCCCCE
Confidence            1     1246789999999877741   1000         001134566654  332 2222 3345678999999986


Q ss_pred             EEEEecC-----CCeEEEEeCCCCcee--eec-cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCC
Q 007283          160 RIATCGE-----DFLVNFYEGPPFKFK--LSH-RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDG  231 (609)
Q Consensus       160 ~i~t~~~-----d~~i~~~~~~~~~~~--~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  231 (609)
                      ++++...     .+.|..|+.......  ..+ .........+++.++|++++ +..+ .|.+|+. .++.+..+..   
T Consensus       202 lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~~~~-~g~~~~~~~~---  275 (305)
T 3dr2_A          202 LYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCVFDS-DGQLLGHIPT---  275 (305)
T ss_dssp             EEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEEECT-TSCEEEEEEC---
T ss_pred             EEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEEECC-CCCEEEEEEC---
Confidence            4444333     267888875432211  111 11223345688999998544 4444 5999997 4555555431   


Q ss_pred             CccceEEEEECCCCCeEEEEeCCC
Q 007283          232 HKGSVYAVSWSPDGKQVLTASADK  255 (609)
Q Consensus       232 h~~~V~~l~~spd~~~l~s~s~d~  255 (609)
                      + ..+.+++|+|+++.|..++.++
T Consensus       276 ~-~~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          276 P-GTASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             S-SCCCEEEECTTSCEEEEEETTE
T ss_pred             C-CceeEEEEeCCCCEEEEEcCCe
Confidence            2 2588999999998888777654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.02  E-value=4.1e-07  Score=87.23  Aligned_cols=197  Identities=12%  Similarity=0.085  Sum_probs=122.5

Q ss_pred             CCcEEEEECCC-CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC
Q 007283           58 YPATVARFSPN-GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT  136 (609)
Q Consensus        58 ~~v~~~~~sp~-g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  136 (609)
                      .--..+.|+|+ ++++++...++.|..||..+++..  .+ .....+.+++|+|||+.+++. + .   -+..+++++++
T Consensus        13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~~-~~~~~~~~i~~~~dG~l~v~~-~-~---~l~~~d~~~g~   84 (297)
T 3g4e_A           13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ--RV-TMDAPVSSVALRQSGGYVATI-G-T---KFCALNWKEQS   84 (297)
T ss_dssp             SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE--EE-ECSSCEEEEEEBTTSSEEEEE-T-T---EEEEEETTTTE
T ss_pred             ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE--EE-eCCCceEEEEECCCCCEEEEE-C-C---eEEEEECCCCc
Confidence            34568889995 555666667899999998876532  22 245679999999999966654 2 1   24455665544


Q ss_pred             eeEEEec----CCccEEEEEEeeCCCeEEEEecCC--------CeEEEEeCCC-CceeeeccCcccceEEEEEcCCCCEE
Q 007283          137 NVGEFDG----HSRRVLSCAFKPSRPFRIATCGED--------FLVNFYEGPP-FKFKLSHRGHSNFVNCVRFSPDGSKF  203 (609)
Q Consensus       137 ~~~~~~~----h~~~v~~~~~~p~~~~~i~t~~~d--------~~i~~~~~~~-~~~~~~~~~h~~~v~~l~~s~dg~~l  203 (609)
                      .......    ....+..++++|++...+.+-+.+        ..-.+|...+ ++... ...+....+.++|+|||+.|
T Consensus        85 ~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~~~~~~pngi~~spdg~~l  163 (297)
T 3g4e_A           85 AVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-YFDQVDISNGLDWSLDHKIF  163 (297)
T ss_dssp             EEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-EEEEESBEEEEEECTTSCEE
T ss_pred             EEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEE-EeeccccccceEEcCCCCEE
Confidence            3221111    134588999999998544443321        1223443222 22222 22333456789999999866


Q ss_pred             -EEEeCCCcEEEEeC--CCCccc--cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          204 -ISVSSDKKGIIYDG--KTADKI--GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       204 -~s~~~d~~i~iwd~--~~~~~~--~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                       ++.+.++.|.+|+.  .++...  ..+.....+.+....+++.++|++.++...++.|..||..
T Consensus       164 yv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~  228 (297)
T 3g4e_A          164 YYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPV  228 (297)
T ss_dssp             EEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTT
T ss_pred             EEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCC
Confidence             44556788999986  444321  1111111234567889999999888888778889999875

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.00  E-value=5.8e-08  Score=95.06  Aligned_cols=226  Identities=8%  Similarity=-0.018  Sum_probs=129.9

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe----------CCCcEEEEcCCCCceeeEEEeec-------c
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD----------VSGTVRIWGAHNDHVLKKEFRVL-------S  100 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~----------~d~~i~vWd~~~~~~~~~~~~~~-------~  100 (609)
                      .+.+.|..+.+.+..+..-..+  .++|||||+++..++          .+++|.+||..+.+... ++...       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~-~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIA-DIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEE-EEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEE-EEECCCccccccC
Confidence            7889999998887766533445  799999999998775          47899999999987543 34332       1


Q ss_pred             cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec-CCccE------EEEEEeeCCCeEEEEecC----C--
Q 007283          101 GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG-HSRRV------LSCAFKPSRPFRIATCGE----D--  167 (609)
Q Consensus       101 ~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v------~~~~~~p~~~~~i~t~~~----d--  167 (609)
                      .....++|||||++|+++..+.. ..+.+-.+|... +..+.- ....+      .-+++.+++....+.-..    +  
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~-~~v~V~~iD~~t-v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~  201 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSS-AAAGLSVPGASD-DQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGI  201 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSS-CEEEEEETTTEE-EEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEE
T ss_pred             CCcceEEEcCCCCEEEEEccCCC-CeEEEEEEchhh-ceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCe
Confidence            24678999999999888753211 123331144432 232210 00000      001111222111111100    0  


Q ss_pred             -----------------------------CeEEEEeCCCCc--eeeecc---------C-cccceEEEEEcCCCCEEEEE
Q 007283          168 -----------------------------FLVNFYEGPPFK--FKLSHR---------G-HSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       168 -----------------------------~~i~~~~~~~~~--~~~~~~---------~-h~~~v~~l~~s~dg~~l~s~  206 (609)
                                                   +.+.+.|.....  ......         + .......++|+|||+.+..+
T Consensus       202 v~~~~t~~i~vg~~P~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~  281 (368)
T 1mda_H          202 VGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMIL  281 (368)
T ss_dssp             CCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred             EEEEeeeeeeCCCCccccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEE
Confidence                                         223333322111  110000         0 00111226899999977765


Q ss_pred             eC---------CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe-EEEEe-CCCcEEEeecccCCCCceEEEec
Q 007283          207 SS---------DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ-VLTAS-ADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       207 ~~---------d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~-l~s~s-~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                      ..         +..+.++|..+.+.+..+..    ......+.|+|||++ +++.. .+++|.++|+.   ..+..+++.
T Consensus       282 ~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~---t~kvv~~I~  354 (368)
T 1mda_H          282 TVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAA---SDQDQSSVE  354 (368)
T ss_dssp             EEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESS---SCEEEEECC
T ss_pred             eccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECC---CCcEEEEEE
Confidence            33         23566999999998877742    225789999999984 55666 58999999987   456665554

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.00  E-value=1.2e-07  Score=93.02  Aligned_cols=111  Identities=10%  Similarity=0.076  Sum_probs=74.1

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCee-----ee-----eEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL-----TE-----EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD  519 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~-----~~-----~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd  519 (609)
                      +..++++|||+.+..+..++. ++|.+....+     ..     .....++.+....++++++|.++++...++.|.+||
T Consensus       197 ~~gia~s~dg~~ly~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          197 VNGIVLDAENEWLYLSPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             EEEEEECTTSCEEEEEESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             cceeEeccCCCEEEEEeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence            567899999999888877764 5555532111     00     001223445566789999999999999999999999


Q ss_pred             ccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEE
Q 007283          520 RVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIY  561 (609)
Q Consensus       520 ~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw  561 (609)
                      ..+++........+....++++|.++++++++.+..+.+-+|
T Consensus       276 ~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f  317 (343)
T 2qe8_A          276 SADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL  317 (343)
T ss_dssp             TTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred             CCCCCEEEEEECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence            734433221111224568999999999988888766544444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.96  E-value=3.4e-08  Score=97.01  Aligned_cols=242  Identities=8%  Similarity=0.010  Sum_probs=145.3

Q ss_pred             CceeEEeecCCCCeEEEe-C--CCEEEEEeCCCCcccc------ccccCCCCcEEEEECCCCCEEEEEeC-----CCcEE
Q 007283           17 GRGILISGHPKSNSILYT-N--GRSVIILDLSNPLQVS------IYGEHAYPATVARFSPNGEWIASADV-----SGTVR   82 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~-~--~~~~~i~~~~~~~~~~------~~~~h~~~v~~~~~sp~g~~las~~~-----d~~i~   82 (609)
                      ..|..++++|+|+.++.. .  +..+.||.+.+++...      ...+|-..+..++|+|+|++.++-..     ++.|.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~   96 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLV   96 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEE
Confidence            467899999999887763 2  2213344333444321      11235567999999999998776543     57899


Q ss_pred             EEcCCCCceeeEEEeec------ccceeEEEECCCCCEEEEEECC-CCcceEEEEEcCCCCeeEEEecCC----------
Q 007283           83 IWGAHNDHVLKKEFRVL------SGRIDDLQWSPDGLRIVACGDG-KGKSLVRAFMWDSGTNVGEFDGHS----------  145 (609)
Q Consensus        83 vWd~~~~~~~~~~~~~~------~~~v~~~~~spdg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~----------  145 (609)
                      +||..+++.+. .+...      ...+..++++|++.++..+..+ .....+.+++++.++....+.+|.          
T Consensus        97 ~~d~~tg~~~~-~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~  175 (343)
T 2qe8_A           97 AWDTLNNQLSR-VIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLV  175 (343)
T ss_dssp             EEETTTTEEEE-EEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCE
T ss_pred             EEECCCCeEEE-EEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCccccccccee
Confidence            99998876432 23321      1246889999875555444321 022345566666555444333321          


Q ss_pred             -------------------ccEEEEEEeeCCCeEEEEecCCCeEEEEeCC---CCc-----ee--eeccCcccceEEEEE
Q 007283          146 -------------------RRVLSCAFKPSRPFRIATCGEDFLVNFYEGP---PFK-----FK--LSHRGHSNFVNCVRF  196 (609)
Q Consensus       146 -------------------~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~---~~~-----~~--~~~~~h~~~v~~l~~  196 (609)
                                         ..+..++|+|++..++++......+..++..   ...     ..  ....++......+++
T Consensus       176 ~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~  255 (343)
T 2qe8_A          176 IDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISI  255 (343)
T ss_dssp             ETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEE
T ss_pred             ECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEE
Confidence                               2357899999997644443333444444321   100     00  011133345567899


Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          197 SPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       197 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      +++|.++++...++.|.+||..+++.. .+.. ..+-....+++|.++++++++.+..+.+.+|.
T Consensus       256 d~~G~l~va~~~~~~V~~~d~~~G~~~-~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          256 DKDHNIYVGDLAHSAIGVITSADRAYK-LLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             CTTCCEEEEEGGGTEEEEEETTTTEEE-EEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             CCCCCEEEEccCCCeEEEEECCCCCEE-EEEE-CCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            999998888888999999998555432 2211 11234588999999999888887665554443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.95  E-value=2.2e-07  Score=89.46  Aligned_cols=205  Identities=11%  Similarity=0.019  Sum_probs=123.8

Q ss_pred             cccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEE
Q 007283           53 YGEHAYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM  131 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~  131 (609)
                      +..+......++|+|+|+ ++.+...++.|..|+. +++.  ..+......+..++|+|||+.+++. .+..  .+..++
T Consensus        40 l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~--~~~~~~~~~~~gl~~d~dG~l~v~~-~~~~--~v~~~~  113 (305)
T 3dr2_A           40 LYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTV--DVLLDATAFTNGNAVDAQQRLVHCE-HGRR--AITRSD  113 (305)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCE--EEEEESCSCEEEEEECTTSCEEEEE-TTTT--EEEEEC
T ss_pred             EecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCE--EEEeCCCCccceeeECCCCCEEEEE-CCCC--EEEEEC
Confidence            333445578899999999 5567777899999987 4432  3455566778999999999855543 2211  233333


Q ss_pred             cCCCCeeEEEecC-----CccEEEEEEeeCCCeEEEE----ecC-------------CCeEEEEeCCCCceeeeccCccc
Q 007283          132 WDSGTNVGEFDGH-----SRRVLSCAFKPSRPFRIAT----CGE-------------DFLVNFYEGPPFKFKLSHRGHSN  189 (609)
Q Consensus       132 ~~~~~~~~~~~~h-----~~~v~~~~~~p~~~~~i~t----~~~-------------d~~i~~~~~~~~~~~~~~~~h~~  189 (609)
                      .+ ++ ...+..+     ...+..++++|++.. +++    |..             .+.+..++...++.....  ...
T Consensus       114 ~~-g~-~~~~~~~~~~~~~~~~~~i~~d~dG~l-~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~  188 (305)
T 3dr2_A          114 AD-GQ-AHLLVGRYAGKRLNSPNDLIVARDGAI-WFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD  188 (305)
T ss_dssp             TT-SC-EEEEECEETTEECSCCCCEEECTTSCE-EEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred             CC-CC-EEEEEeccCCCccCCCCCEEECCCCCE-EEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence            33 32 2222211     134567899999974 554    321             245666676555443332  344


Q ss_pred             ceEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCccccccCc-CCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          190 FVNCVRFSPDGSKFISVSSD------KKGIIYDGKTADKIGELSP-EDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       190 ~v~~l~~s~dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~~-~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      ..+.++|+|||+.|..+...      +.|.+|+...+. +..... .....+....+++.++|++.++. .+ .|.+|+.
T Consensus       189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~  265 (305)
T 3dr2_A          189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS  265 (305)
T ss_dssp             SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT
T ss_pred             CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC
Confidence            56789999999977777655      688899876443 110000 00122344578999999855444 44 4999987


Q ss_pred             ccCCCCceEEEec
Q 007283          263 SEDNHGKLKKTLT  275 (609)
Q Consensus       263 ~~~~~~~~~~~~~  275 (609)
                      .    ++....+.
T Consensus       266 ~----g~~~~~~~  274 (305)
T 3dr2_A          266 D----GQLLGHIP  274 (305)
T ss_dssp             T----SCEEEEEE
T ss_pred             C----CCEEEEEE
Confidence            4    44554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=98.92  E-value=8.9e-07  Score=86.08  Aligned_cols=192  Identities=15%  Similarity=0.043  Sum_probs=121.1

Q ss_pred             cEEEEECCCC-CEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCee
Q 007283           60 ATVARFSPNG-EWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV  138 (609)
Q Consensus        60 v~~~~~sp~g-~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (609)
                      ...++|+|++ .++.+...++.|..||..+++..  .+. ....+.+++|+|||+.+++..+     -+..++.+.+...
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~--~~~-~~~~v~~i~~~~dg~l~v~~~~-----gl~~~d~~~g~~~  122 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKT--VHA-LPFMGSALAKISDSKQLIASDD-----GLFLRDTATGVLT  122 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE--EEE-CSSCEEEEEEEETTEEEEEETT-----EEEEEETTTCCEE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE--EEE-CCCcceEEEEeCCCeEEEEECC-----CEEEEECCCCcEE
Confidence            5678899975 55566667889999998876532  222 3467999999999987776521     1445555555432


Q ss_pred             EEEecC-----CccEEEEEEeeCCCeEEEEecC-----CCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEE-e
Q 007283          139 GEFDGH-----SRRVLSCAFKPSRPFRIATCGE-----DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISV-S  207 (609)
Q Consensus       139 ~~~~~h-----~~~v~~~~~~p~~~~~i~t~~~-----d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~  207 (609)
                      . +...     ...+..++++|++...+.+.+.     .+.+..++  .++... +..+....+.++|+|||+.|..+ +
T Consensus       123 ~-~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~~~~~~i~~s~dg~~lyv~~~  198 (326)
T 2ghs_A          123 L-HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADISIPNSICFSPDGTTGYFVDT  198 (326)
T ss_dssp             E-EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEESSEEEEEECTTSCEEEEEET
T ss_pred             E-EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCCcccCCeEEcCCCCEEEEEEC
Confidence            2 2211     2468899999999854433321     23455555  343322 22233456789999999866554 4


Q ss_pred             CCCcEEEEeCC--CC-ccc--cccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          208 SDKKGIIYDGK--TA-DKI--GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       208 ~d~~i~iwd~~--~~-~~~--~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .++.|.+|+..  ++ ...  ..+.......+....+++.++|.+.++...++.|..|+..
T Consensus       199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred             CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence            57889999975  44 211  1111111233456789999999887777667889988863

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.78  E-value=5.3e-06  Score=81.65  Aligned_cols=97  Identities=15%  Similarity=0.211  Sum_probs=67.6

Q ss_pred             eCCCeEEEEecCCCeEEEEeCCCC----ceeeecc------C-cccceEEEEEcCCCCEEEEEeCC------CcEEEEeC
Q 007283          155 PSRPFRIATCGEDFLVNFYEGPPF----KFKLSHR------G-HSNFVNCVRFSPDGSKFISVSSD------KKGIIYDG  217 (609)
Q Consensus       155 p~~~~~i~t~~~d~~i~~~~~~~~----~~~~~~~------~-h~~~v~~l~~s~dg~~l~s~~~d------~~i~iwd~  217 (609)
                      +++.+.+++|..+..|.+.|..+.    +......      . -...-..+.++|+| +++++..+      +.+.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            778888899999999999997532    3333221      0 11134567889999 77776655      78999999


Q ss_pred             CCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          218 KTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      ++.+.+.++....+....-+.+.|+|+++.+++..
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~  206 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSE  206 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECB
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEcc
Confidence            99998887753222223345688899999888774

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=0.0012  Score=72.47  Aligned_cols=529  Identities=11%  Similarity=0.029  Sum_probs=269.1

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCcccccccc-------CCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCC
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGE-------HAYPATVARFSPNGE-WIASADVSGTVRIWGAHND   89 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~-------h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~   89 (609)
                      ....|...++|..=+.+. .-+..||..+-+.......       -...|.++...++|+ +-+ +..++.+..||..++
T Consensus        20 ~V~~I~qD~~G~lWigT~-~GL~ryDG~~f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~~lWi-gt~~~Gl~~~d~~~~   97 (781)
T 3v9f_A           20 YVLSITQDKQGFLWFATE-EGLNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWI-ATQRAGLNAYNYETQ   97 (781)
T ss_dssp             BEEEEEECTTSCEEEEES-SCEEEECSSSEEEECCCSSCSSSCCCSCSCEEEEEECSSSSEEEE-EESSSCEEEEETTTT
T ss_pred             EeEEEEECCCCCEEEccC-CcCccccCCceEEEEcCCCCCccccccccccceEEEcCCCCEEEE-EeCCCCcceECCCCC
Confidence            456788888886433333 3366676543111111000       123599999999998 555 445546889998776


Q ss_pred             ceeeEEEe------ecccceeEEEECC--CCCEEEEEECCCCcceEEEEEcCCCCeeEEEec------CCccEEEEEEee
Q 007283           90 HVLKKEFR------VLSGRIDDLQWSP--DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG------HSRRVLSCAFKP  155 (609)
Q Consensus        90 ~~~~~~~~------~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------h~~~v~~~~~~p  155 (609)
                      +.......      .....|.++...+  +|...+.+..+ +   +..++-+.+ ....+..      ....|.++...+
T Consensus        98 ~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~~~-g---l~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~d~  172 (781)
T 3v9f_A           98 SFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYR-G---IEYLDIATG-KFTHYNKSTVPALPSEQTWTATEAE  172 (781)
T ss_dssp             EEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEESSS-C---EEEEETTTT-EEEEESTTTCTTCSCCCEEEEEEEE
T ss_pred             eEEeeccccCCCCCcccCcceEEEecCccCCCEEEEECCC-C---eeEEECCCC-eEEeeccCcccCCCccceEEEEECC
Confidence            53211001      0123588888888  77665544121 1   122222222 2222221      134578888877


Q ss_pred             CCCeEEEEecCCCeEEEEeCCCCceeeecc-------CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCc
Q 007283          156 SRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSP  228 (609)
Q Consensus       156 ~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~-------~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~  228 (609)
                      ++..  -.+..++-+..++....+...-..       -....|.++...++|.+.+ |+.+ -+.+||..+++.......
T Consensus       173 ~g~l--wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~  248 (781)
T 3v9f_A          173 DGKL--YIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNN  248 (781)
T ss_dssp             TTEE--EEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC----
T ss_pred             CCCE--EEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcC
Confidence            7753  334444346777766544322110       0134689999988887554 5555 688899766543221110


Q ss_pred             C----CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEE----Ee-ccCCCCCcc-ceEEEEEE-cCCeEE
Q 007283          229 E----DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKK----TL-TPSGSGGVD-DMLVGCLW-QNDFLV  297 (609)
Q Consensus       229 ~----~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~----~~-~~~~~~~~~-~~~~~~~~-~~~~~~  297 (609)
                      .    .-....|.++...++|.+.+ |+..+-|.+++...........    .+ ......... ..+..... ....+.
T Consensus       249 ~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW  327 (781)
T 3v9f_A          249 PGNIHGALSSYIFSIKQLKDNKLWI-ATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNNIW  327 (781)
T ss_dssp             -------CCCCEEEEEECTTSEEEE-EESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCCEE
T ss_pred             CCccccccCceEEEEEECCCCCEEE-EeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCCEE
Confidence            0    01235699999988887554 4454568888875321100000    00 000011111 12222222 244677


Q ss_pred             EEEcCCcEEEEeCCCCCCCcee--------eeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceec---ccc
Q 007283          298 IVSLGGTISIFSANDLEKSPLQ--------LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ---RKE  366 (609)
Q Consensus       298 ~~~~~g~i~~~~~~~~~~~~~~--------~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~---~~~  366 (609)
                      +++.++-+..++.....-....        .......|.++.... + ..+..|+.++-+..++...+......   ...
T Consensus       328 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~  405 (781)
T 3v9f_A          328 IGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDG-Q-GKLWIGTDGGGINVFENGKRVAIYNKENRELL  405 (781)
T ss_dssp             EEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECT-T-SCEEEEEBSSCEEEEETTEEEEECC-----CC
T ss_pred             EEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcC-C-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCC
Confidence            7777777777765432110000        001234577766533 2 34556666666777776543221111   111


Q ss_pred             ccceeEeeee-CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCC--eeeEE
Q 007283          367 NSQIKCFAAI-EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGA--EVVST  443 (609)
Q Consensus       367 ~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  443 (609)
                      ...+.++... .+.+..+..++-+..++.............. ......++..+....+-+++..|+..+...  .....
T Consensus       406 ~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~-~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~  484 (781)
T 3v9f_A          406 SNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKN-ELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHH  484 (781)
T ss_dssp             CSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTT-CCCCEEEEEECTTSEEEEEETTEEEEEESSSSSCCEE
T ss_pred             CcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCC-CCCeEEEEEECCCCCEEEEECCceEEEeCCCCeEEec
Confidence            2345555543 5567777766667777654332111000000 111222333443344444455676666421  11111


Q ss_pred             ecc------CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEec-CCCceEEEEECCCCCEEEEEeCCCeEE
Q 007283          444 INL------RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEK-HRGAVSVIRYSPDVSMFASGDVNREAI  516 (609)
Q Consensus       444 ~~~------~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~-h~~~i~~v~~s~~~~~l~s~s~d~~v~  516 (609)
                      ...      ...+.++...++|.+.+. +.++-|..|+..++.+.......+ ....|.++...++|.+.++.. +|-+.
T Consensus       485 ~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~  562 (781)
T 3v9f_A          485 YDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVC  562 (781)
T ss_dssp             ECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEE
T ss_pred             ccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceE
Confidence            111      245788888898886654 443447778765544321100001 134689999999998776654 66548


Q ss_pred             EEEccCCceEEee-ec-CCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCC
Q 007283          517 VWDRVSREVKLKN-ML-YHTARINCLAWSPNNSMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       517 iwd~~~~~~~~~~-~~-~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~  565 (609)
                      .||..+.+...-. .. .....|.++...++|++.++ +..| |..++...
T Consensus       563 ~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~  611 (781)
T 3v9f_A          563 FPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSK  611 (781)
T ss_dssp             ESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTT
T ss_pred             EECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCC
Confidence            8887655432111 01 12346889999999986654 4455 66677653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.65  E-value=3.1e-05  Score=72.64  Aligned_cols=223  Identities=9%  Similarity=-0.018  Sum_probs=134.5

Q ss_pred             CceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceee
Q 007283           17 GRGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLK   93 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~   93 (609)
                      ..|..+.++|+++.|++.+  .+.|..+++............-.....++++|++..|. +-...+.|.+++.+.... .
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~  114 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-R  114 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-E
Confidence            4567889999877777664  47899999876554333322224578999999765554 545678899998865321 1


Q ss_pred             EEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           94 KEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        94 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      ............++++|++.+|..+..+.....+.....+.. ....+. ........++++|++..++++-...+.|..
T Consensus       115 ~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~  193 (267)
T 1npe_A          115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAEC  193 (267)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEE
Confidence            112212245689999998767666553321223434444432 222222 233457889999988776777777788888


Q ss_pred             EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC
Q 007283          173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK  246 (609)
Q Consensus       173 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~  246 (609)
                      ++...........+ ......+++.  +..|..+. ..+.|..+|..+++.+..+..  +.......+++.|++.
T Consensus       194 ~~~~g~~~~~~~~~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~--g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          194 LNPAQPGRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHP--HKQTRLYGITIALSQC  263 (267)
T ss_dssp             EETTEEEEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECC--SSCCCCCCEEEECSCC
T ss_pred             EecCCCceEEEecC-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcc--ccccccceeeecCccC
Confidence            88654332222222 1223455553  44444444 568899999988887766642  2112356677777764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.64  E-value=1.4e-06  Score=85.19  Aligned_cols=204  Identities=9%  Similarity=-0.073  Sum_probs=123.2

Q ss_pred             ceeEEeecCCCCeEEEeC-----------CCEEEEEeCCCCccccccccC-------CCCcEEEEECCCCCEEEEEeC--
Q 007283           18 RGILISGHPKSNSILYTN-----------GRSVIILDLSNPLQVSIYGEH-------AYPATVARFSPNGEWIASADV--   77 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~-----------~~~~~i~~~~~~~~~~~~~~h-------~~~v~~~~~sp~g~~las~~~--   77 (609)
                      .| .+.++|||..++.++           ++.+.++|+.+.+....+..+       ...-..++|||||++|+.+..  
T Consensus        67 ~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~  145 (368)
T 1mda_H           67 LS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGS  145 (368)
T ss_dssp             TC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSS
T ss_pred             CC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCC
Confidence            35 899999999887765           478999999998887766422       123557899999999998764  


Q ss_pred             CCcEEE--EcCCCCceeeEEEee-------cccceeEEEECCCCCEEEEEECC----CCc--------------------
Q 007283           78 SGTVRI--WGAHNDHVLKKEFRV-------LSGRIDDLQWSPDGLRIVACGDG----KGK--------------------  124 (609)
Q Consensus        78 d~~i~v--Wd~~~~~~~~~~~~~-------~~~~v~~~~~spdg~~l~~~~~~----~~~--------------------  124 (609)
                      +..|.+  +|..+   + ..+..       ..+.-..+++++||+.++..-+.    ...                    
T Consensus       146 ~~~v~V~~iD~~t---v-~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~  221 (368)
T 1mda_H          146 SAAAGLSVPGASD---D-QLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANY  221 (368)
T ss_dssp             SCEEEEEETTTEE---E-EEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETT
T ss_pred             CCeEEEEEEchhh---c-eEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcccccc
Confidence            467888  99866   1 11211       01111224556666554432221    000                    


Q ss_pred             ---------ceEEEEEcCCCC--eeEEEec-------CC---ccEEEEEEeeCCCeEEEEec---C-----CCeEEEEeC
Q 007283          125 ---------SLVRAFMWDSGT--NVGEFDG-------HS---RRVLSCAFKPSRPFRIATCG---E-----DFLVNFYEG  175 (609)
Q Consensus       125 ---------~~~~~~~~~~~~--~~~~~~~-------h~---~~v~~~~~~p~~~~~i~t~~---~-----d~~i~~~~~  175 (609)
                               ..+.+.+.....  .+..+.-       +.   .....++|+|++...+++..   .     +..+.++|.
T Consensus       222 ~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~  301 (368)
T 1mda_H          222 PGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA  301 (368)
T ss_dssp             TTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred             CCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEEC
Confidence                     001111211110  0000000       00   00011679999887665543   2     234559999


Q ss_pred             CCCceeeeccCcccceEEEEEcCCCC-EEEEEe-CCCcEEEEeCCCCccccccC
Q 007283          176 PPFKFKLSHRGHSNFVNCVRFSPDGS-KFISVS-SDKKGIIYDGKTADKIGELS  227 (609)
Q Consensus       176 ~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~-~d~~i~iwd~~~~~~~~~~~  227 (609)
                      .+.+....+.... ....++|+|||+ .+++.. .++++.++|..+.+.+.++.
T Consensus       302 ~t~~vv~~i~vg~-~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~  354 (368)
T 1mda_H          302 SVGQTSGPISNGH-DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE  354 (368)
T ss_dssp             SSCCEEECCEEEE-EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECC
T ss_pred             CCCeEEEEEECCC-CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEE
Confidence            8887766654332 478899999998 556666 59999999999999887774

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.58  E-value=1.7e-05  Score=84.93  Aligned_cols=135  Identities=12%  Similarity=0.146  Sum_probs=88.0

Q ss_pred             cCCC---CEEEEEeCCCcEEEEEecCCeeeeeEEEec---------CCCce------------------------EEEEE
Q 007283          456 APDG---SEAIIGSQDGKLRVYSIRGDTLTEEAVLEK---------HRGAV------------------------SVIRY  499 (609)
Q Consensus       456 sp~g---~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~---------h~~~i------------------------~~v~~  499 (609)
                      ..+|   ..++.++.+|.|+++|..++++.....+..         ...++                        ..++|
T Consensus       321 ~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~  400 (677)
T 1kb0_A          321 KIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSF  400 (677)
T ss_dssp             EETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEE
T ss_pred             ccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceE
Confidence            3466   578889999999999988776543221110         00111                        15688


Q ss_pred             CCCCCEEEEEeC-------------------------------------------CCeEEEEEccCCceEEeeecCCCCc
Q 007283          500 SPDVSMFASGDV-------------------------------------------NREAIVWDRVSREVKLKNMLYHTAR  536 (609)
Q Consensus       500 s~~~~~l~s~s~-------------------------------------------d~~v~iwd~~~~~~~~~~~~~h~~~  536 (609)
                      +|++.++.+...                                           .+.+..||+.+++.....  .+...
T Consensus       401 dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~--~~~~~  478 (677)
T 1kb0_A          401 NPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSV--EHVSP  478 (677)
T ss_dssp             ETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEE--EESSS
T ss_pred             cCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeec--CCCCC
Confidence            999887776543                                           278999999888765432  23334


Q ss_pred             eEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEE
Q 007283          537 INCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVV  593 (609)
Q Consensus       537 i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~  593 (609)
                      +....++.++.+++.++.|+.+++||..+++ .+..+..++.....-+.|. +++.++
T Consensus       479 ~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~-~lw~~~~~~~~~~~p~~y~~~G~~~v  535 (677)
T 1kb0_A          479 WNGGTLTTAGNVVFQGTADGRLVAYHAATGE-KLWEAPTGTGVVAAPSTYMVDGRQYV  535 (677)
T ss_dssp             CCCCEEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             CcCcceEeCCCEEEEECCCCcEEEEECCCCc-eeeeeeCCCCcccCCEEEEeCCEEEE
Confidence            5555666788889999999999999998754 4455544454434456665 665443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.57  E-value=7.7e-06  Score=80.49  Aligned_cols=224  Identities=13%  Similarity=0.091  Sum_probs=135.4

Q ss_pred             CCCCeEEEeC--CCEEEEEeCCCC-c---cccccc------cCC-CCcEEEEECCCCCEEEEEeCC------CcEEEEcC
Q 007283           26 PKSNSILYTN--GRSVIILDLSNP-L---QVSIYG------EHA-YPATVARFSPNGEWIASADVS------GTVRIWGA   86 (609)
Q Consensus        26 ~~~~~l~~~~--~~~~~i~~~~~~-~---~~~~~~------~h~-~~v~~~~~sp~g~~las~~~d------~~i~vWd~   86 (609)
                      ++++.|+.++  .++|.++|+.+. +   ...+++      ... ..--.+..+|+| +.+++..+      +.|.+.|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            7888888775  479999998543 3   222221      000 011235688999 66665444      78999999


Q ss_pred             CCCceeeEEEeeccc---ceeEEEECCCCCEEEEEECC----------------CCcceEEEEEcCCCCeeEEEecC-C-
Q 007283           87 HNDHVLKKEFRVLSG---RIDDLQWSPDGLRIVACGDG----------------KGKSLVRAFMWDSGTNVGEFDGH-S-  145 (609)
Q Consensus        87 ~~~~~~~~~~~~~~~---~v~~~~~spdg~~l~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~h-~-  145 (609)
                      .+.++.. ++..-.+   --..+.|+|+++.+++..=+                .....+.+|+|+..+.+.++.-- . 
T Consensus       172 ~T~~v~~-~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          172 YSFEPLG-KWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTCCEEE-ECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCeEEE-EEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9877544 3332111   23458889999988886300                11235788899887666666532 1 


Q ss_pred             ccEEEEEE--eeCCCeEEEEec-----CCCeEEEEeCCCCce--eee--cc----------------CcccceEEEEEcC
Q 007283          146 RRVLSCAF--KPSRPFRIATCG-----EDFLVNFYEGPPFKF--KLS--HR----------------GHSNFVNCVRFSP  198 (609)
Q Consensus       146 ~~v~~~~~--~p~~~~~i~t~~-----~d~~i~~~~~~~~~~--~~~--~~----------------~h~~~v~~l~~s~  198 (609)
                      .....+.|  +|++.+.++++-     -++.+.+|....++.  ...  ..                +-......+.+||
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~  330 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISL  330 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECT
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECC
Confidence            23345555  999998777776     666775543211211  111  00                0023467899999


Q ss_pred             CCCEEEEEeC-CCcEEEEeCCCC---ccccccCcCCC------C------ccceEEEEECCCCCeEEEEe
Q 007283          199 DGSKFISVSS-DKKGIIYDGKTA---DKIGELSPEDG------H------KGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       199 dg~~l~s~~~-d~~i~iwd~~~~---~~~~~~~~~~~------h------~~~V~~l~~spd~~~l~s~s  252 (609)
                      ||++|.++.. .+.|.+||+...   +.+..+.. .|      |      .+.=..+.++|||++|+.+.
T Consensus       331 DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~t-GG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          331 DDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKL-GGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TSCEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-BTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEe-CCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            9998877664 678999997532   23332211 00      1      01236789999999988886

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.53  E-value=0.00025  Score=70.14  Aligned_cols=291  Identities=12%  Similarity=0.022  Sum_probs=154.2

Q ss_pred             CCCEEEEEeCCCCccccccccC---------CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeE
Q 007283           35 NGRSVIILDLSNPLQVSIYGEH---------AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDD  105 (609)
Q Consensus        35 ~~~~~~i~~~~~~~~~~~~~~h---------~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~  105 (609)
                      ..+.++.+|..+++.+-.+...         ...+.+. ...++..|..++.++.|..+|..+++.+- .+.........
T Consensus        61 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~v~~~~g~l~a~d~~tG~~~W-~~~~~~~~~~~  138 (376)
T 3q7m_A           61 RAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGG-VTVSGGHVYIGSEKAQVYALNTSDGTVAW-QTKVAGEALSR  138 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEE-EEEETTEEEEEETTSEEEEEETTTCCEEE-EEECSSCCCSC
T ss_pred             CCCeEEEEEccCCceeeeecCccccccccccCcccccC-ceEeCCEEEEEcCCCEEEEEECCCCCEEE-EEeCCCceEcC
Confidence            3568889999888765433321         1223222 22234566667788999999998887542 33322221112


Q ss_pred             EEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccE-----EEEEEeeCCCeEEEEecCCCeEEEEeCCCCce
Q 007283          106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRV-----LSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF  180 (609)
Q Consensus       106 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v-----~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~  180 (609)
                      .... ++ .+++...+   ..+..++-.+++.+..+.......     ...... ++  .+..+..++.+..+|..+++.
T Consensus       139 p~~~-~~-~v~v~~~~---g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~-~~--~v~~g~~~g~l~~~d~~tG~~  210 (376)
T 3q7m_A          139 PVVS-DG-LVLIHTSN---GQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA-FG--AAVVGGDNGRVSAVLMEQGQM  210 (376)
T ss_dssp             CEEE-TT-EEEEECTT---SEEEEEETTTCCEEEEEECCC-----CCCCCCEEE-TT--EEEECCTTTEEEEEETTTCCE
T ss_pred             CEEE-CC-EEEEEcCC---CeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE-CC--EEEEEcCCCEEEEEECCCCcE
Confidence            2222 34 44433221   124455555666666554322111     111122 22  366678888899999877766


Q ss_pred             eeeccCcc--c-----ceEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEE
Q 007283          181 KLSHRGHS--N-----FVNCVRFSP--DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTA  251 (609)
Q Consensus       181 ~~~~~~h~--~-----~v~~l~~s~--dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~  251 (609)
                      .-......  .     .+..+.-.|  .+..+..++.++.+..+|..+++.+.....     .....+..  ++..++.+
T Consensus       211 ~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~-----~~~~~~~~--~~~~l~~~  283 (376)
T 3q7m_A          211 IWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL-----GSVNDFIV--DGNRIYLV  283 (376)
T ss_dssp             EEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC-----CCEEEEEE--ETTEEEEE
T ss_pred             EEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC-----CCCCCceE--ECCEEEEE
Confidence            54332110  0     000000111  245677788899999999999887655421     22333433  46677788


Q ss_pred             eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEE-E
Q 007283          252 SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTA-L  330 (609)
Q Consensus       252 s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~-~  330 (609)
                      +.++.+..+|...   ++..-............    ....++.+++++.+|.+++++...... ..........+.. .
T Consensus       284 ~~~g~l~~~d~~t---G~~~w~~~~~~~~~~~~----~~~~~~~l~v~~~~g~l~~~d~~tG~~-~~~~~~~~~~~~~~~  355 (376)
T 3q7m_A          284 DQNDRVMALTIDG---GVTLWTQSDLLHRLLTS----PVLYNGNLVVGDSEGYLHWINVEDGRF-VAQQKVDSSGFQTEP  355 (376)
T ss_dssp             ETTCCEEEEETTT---CCEEEEECTTTTSCCCC----CEEETTEEEEECTTSEEEEEETTTCCE-EEEEECCTTCBCSCC
T ss_pred             cCCCeEEEEECCC---CcEEEeecccCCCcccC----CEEECCEEEEEeCCCeEEEEECCCCcE-EEEEecCCCcceeCC
Confidence            8899999999863   44443332111111111    112467888888899999998765321 1122221122211 1


Q ss_pred             EEecCCCCEEEEEecCCcEEEEe
Q 007283          331 TVLNIDPKVILSSSYDGLIVKWI  353 (609)
Q Consensus       331 ~~~~~~~~~~~t~s~dg~i~~W~  353 (609)
                      ...   +..++.++.+|.+..++
T Consensus       356 ~~~---~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          356 VAA---DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEE---TTEEEEEBTTSCEEEEE
T ss_pred             EEE---CCEEEEEeCCCEEEEEe
Confidence            121   24667778888887763

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.52  E-value=2.6e-06  Score=82.86  Aligned_cols=296  Identities=10%  Similarity=0.038  Sum_probs=161.9

Q ss_pred             eecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccc
Q 007283           23 SGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR  102 (609)
Q Consensus        23 ~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~  102 (609)
                      ...++|...+...++.+..+| .+++....+..+...+..+.+.++|++.+.. .+  +..+|. +++.+. .+......
T Consensus        26 ~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-~~--l~~~d~-~g~~~~-~~~~~~~~   99 (330)
T 3hxj_A           26 ILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGS-DK--VYAINP-DGTEKW-RFDTKKAI   99 (330)
T ss_dssp             EECTTSCEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSS-CE--EEEECC-CGGGGG-GSCC----
T ss_pred             eEccCCeEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEec-Cc--EEEECC-CCcEEE-EEECCCCc
Confidence            344556544444456788888 7776654444444456788888888866643 33  888885 433221 11111112


Q ss_pred             eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee
Q 007283          103 IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL  182 (609)
Q Consensus       103 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~  182 (609)
                      .....+. ++...+ ...+.   -+..++-+ +........+...+.++...+++.  +..++.++.+..++.. ++...
T Consensus       100 ~~~~~~~-~~~l~v-~t~~~---~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~  170 (330)
T 3hxj_A          100 VSDFTIF-EDILYV-TSMDG---HLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKW  170 (330)
T ss_dssp             -CCEEEE-TTEEEE-ECTTS---EEEEECTT-SCEEEEEECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEE
T ss_pred             ccCceEE-CCEEEE-EecCC---EEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeE
Confidence            2223333 554333 32221   12333333 455555554555555666666665  5557777888899877 65554


Q ss_pred             eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      .+......+.++.+.++|..++ ++  +.+..+| .+++......   .....+.++...++|.+ ..++.++.+..++.
T Consensus       171 ~~~~~~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~---~~~~~~~~~~~~~~g~l-~v~t~~~gl~~~~~  242 (330)
T 3hxj_A          171 RFKTNDAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFY---AGYWTVTRPAISEDGTI-YVTSLDGHLYAINP  242 (330)
T ss_dssp             EEECSSCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEEC---CSSCCCSCCEECTTSCE-EEEETTTEEEEECT
T ss_pred             EEecCCCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEc---cCCcceeceEECCCCeE-EEEcCCCeEEEECC
Confidence            4444455677778888887544 44  8899999 6666554442   22355778888888754 45566788888874


Q ss_pred             ccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEE
Q 007283          263 SEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS  342 (609)
Q Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t  342 (609)
                      .    ++....+..... .....   ....+..+.+++.+|.+..++..  .............+.++... .+ ..+..
T Consensus       243 ~----g~~~~~~~~~~~-~~~~~---~~~~~g~l~v~t~~ggl~~~d~~--g~~~~~~~~~~~~~~~~~~d-~~-g~l~~  310 (330)
T 3hxj_A          243 D----GTEKWRFKTGKR-IESSP---VIGNTDTIYFGSYDGHLYAINPD--GTEKWNFETGSWIIATPVID-EN-GTIYF  310 (330)
T ss_dssp             T----SCEEEEEECSSC-CCSCC---EECTTSCEEEECTTCEEEEECTT--SCEEEEEECSSCCCSCCEEC-TT-CCEEE
T ss_pred             C----CCEeEEeeCCCC-ccccc---eEcCCCeEEEecCCCCEEEECCC--CcEEEEEEcCCccccceEEc-CC-CEEEE
Confidence            3    333333322111 11111   11235677888888888888742  12222222223334444432 23 34566


Q ss_pred             EecCCcEEEEe
Q 007283          343 SSYDGLIVKWI  353 (609)
Q Consensus       343 ~s~dg~i~~W~  353 (609)
                      ++.+|.+++-.
T Consensus       311 gt~~G~~~~~~  321 (330)
T 3hxj_A          311 GTRNGKFYALF  321 (330)
T ss_dssp             ECTTSCEEEEE
T ss_pred             EcCCCeEEEEe
Confidence            78888887653

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.52  E-value=9.5e-07  Score=90.08  Aligned_cols=226  Identities=13%  Similarity=0.104  Sum_probs=140.8

Q ss_pred             cCCCCeEEEeC--CCEEEEEeCCCCcccccccc-CCCCcEEEEE-C-CCCCEEEEEe------------------CCCcE
Q 007283           25 HPKSNSILYTN--GRSVIILDLSNPLQVSIYGE-HAYPATVARF-S-PNGEWIASAD------------------VSGTV   81 (609)
Q Consensus        25 ~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~-h~~~v~~~~~-s-p~g~~las~~------------------~d~~i   81 (609)
                      .+||.++...+  +.+|.+.|+.+.+...++.- .....-.+++ + |+++|+..++                  .++++
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~v  177 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  177 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceE
Confidence            55887765543  46899999998775553321 1234678887 5 9999998773                  34588


Q ss_pred             EEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCc------------ceEEEEEcCC-------CC-----e
Q 007283           82 RIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK------------SLVRAFMWDS-------GT-----N  137 (609)
Q Consensus        82 ~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~------------~~~~~~~~~~-------~~-----~  137 (609)
                      -+.|.++.++.. ++..- +.-..++++|||++++++..+...            ..+.+.+|..       ++     .
T Consensus       178 tvID~~t~~v~~-qI~Vg-g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          178 TAVDADKWEVAW-QVLVS-GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEEETTTTEEEE-EEEES-SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEEECCCCeEEE-EEEeC-CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            999998866433 33321 245778999999999988854322            2233333321       10     0


Q ss_pred             eEEEecCC-------------ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc------------eeeeccCcccceE
Q 007283          138 VGEFDGHS-------------RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK------------FKLSHRGHSNFVN  192 (609)
Q Consensus       138 ~~~~~~h~-------------~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~------------~~~~~~~h~~~v~  192 (609)
                      +..+....             ....++.++|||.++++++..+.++.++|..+.+            ...... -.....
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~  334 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPL  334 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEE
T ss_pred             EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcc
Confidence            12222211             1223588999999989998888999999987542            111111 123467


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCC----------CccccccCcC--CCCccceEEEEECCCCCeEEEEeC
Q 007283          193 CVRFSPDGSKFISVSSDKKGIIYDGKT----------ADKIGELSPE--DGHKGSVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       193 ~l~~s~dg~~l~s~~~d~~i~iwd~~~----------~~~~~~~~~~--~~h~~~V~~l~~spd~~~l~s~s~  253 (609)
                      .++|+|+|...++.--|+.+.+||..+          .+.+.++...  .+|...-..+.++|||++|++...
T Consensus       335 h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          335 HTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             eEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            899999995455666799999999765          2233333211  133222233456899999998854

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.51  E-value=0.00025  Score=66.32  Aligned_cols=236  Identities=12%  Similarity=0.001  Sum_probs=132.0

Q ss_pred             CeEEEeCCCEEEEEeCCCCccc-----cccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceeeEEEeecccc
Q 007283           29 NSILYTNGRSVIILDLSNPLQV-----SIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLKKEFRVLSGR  102 (609)
Q Consensus        29 ~~l~~~~~~~~~i~~~~~~~~~-----~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~~~~~~~~~~  102 (609)
                      ..|++...+.|..+++......     ..+.........++++|++..|. +-..++.|..++...... ..........
T Consensus         2 ~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCCC
T ss_pred             cEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCCC
Confidence            4555555557778887654321     11111123467899999766655 444678999999876432 2222222246


Q ss_pred             eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecC--CCeEEEEeCCCCce
Q 007283          103 IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE--DFLVNFYEGPPFKF  180 (609)
Q Consensus       103 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~--d~~i~~~~~~~~~~  180 (609)
                      ...++++|++.+|..+..+..  .+..+..+.................++++|++..++++...  .+.|..++......
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~--~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLD--RIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTT--EEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccEEEEEecCCeEEEEECCCC--EEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            789999998777776654332  34444554332211222222456889999976654555433  35676665432211


Q ss_pred             eeeccCcccceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEE
Q 007283          181 KLSHRGHSNFVNCVRFSPDGSKFISV-SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKV  259 (609)
Q Consensus       181 ~~~~~~h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~i  259 (609)
                      .............++++|++..|..+ ...+.|..++.........+. ...+   -..++.. .+.++++....+.|..
T Consensus       159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~-~~~~---P~gi~~d-~~~lyva~~~~~~v~~  233 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQY---PFAVTSY-GKNLYYTDWKTNSVIA  233 (267)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCS---EEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEec-CCCC---ceEEEEe-CCEEEEEECCCCeEEE
Confidence            11111223457889999987765544 456789999986543222221 1112   2455553 3444444445688999


Q ss_pred             eecccCCCCceEEEec
Q 007283          260 WDISEDNHGKLKKTLT  275 (609)
Q Consensus       260 wd~~~~~~~~~~~~~~  275 (609)
                      +|..   .++....+.
T Consensus       234 ~d~~---~g~~~~~i~  246 (267)
T 1npe_A          234 MDLA---ISKEMDTFH  246 (267)
T ss_dssp             EETT---TTEEEEEEC
T ss_pred             EeCC---CCCceEEEc
Confidence            9875   355555553

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.50  E-value=0.002  Score=67.83  Aligned_cols=229  Identities=13%  Similarity=-0.004  Sum_probs=122.1

Q ss_pred             CeEEEeCCCEEEEEeCCCCc-cccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCCCceeeEEEeecccceeEE
Q 007283           29 NSILYTNGRSVIILDLSNPL-QVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHNDHVLKKEFRVLSGRIDDL  106 (609)
Q Consensus        29 ~~l~~~~~~~~~i~~~~~~~-~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~  106 (609)
                      -.|++.+.+.|...++.... .....-..-.....++|++.+..|.-++ ..+.|+.++.+........+..-......+
T Consensus        10 ~~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~Gl   89 (619)
T 3s94_A           10 PLLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL   89 (619)
T ss_dssp             CCEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEE
T ss_pred             ceEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeE
Confidence            35778888889999987643 2222222334578999999777666555 467888888765421112222222467899


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe-cCCCeEEEEeCCCCceeeecc
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC-GEDFLVNFYEGPPFKFKLSHR  185 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~-~~d~~i~~~~~~~~~~~~~~~  185 (609)
                      ++.+.+..|..+....  ..+.....+.......+.+.......++++|.+..++.+- +....|...+..-........
T Consensus        90 AvD~~~~~ly~~d~~~--~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~  167 (619)
T 3s94_A           90 ACDWLGEKLYWTDSET--NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIIN  167 (619)
T ss_dssp             EEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEecCCEEEEEeCCC--CEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEe
Confidence            9999887777765333  2455555554322222223444566889998766545543 334455544432111111112


Q ss_pred             CcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          186 GHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ......+.|++++++..|..+. ..+.|...+...............|.   .++++.++ ..+.+-...+.|...|..
T Consensus       168 ~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P---~gi~~~~~-~ly~td~~~~~V~~~d~~  242 (619)
T 3s94_A          168 SEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHP---FALTLFED-ILYWTDWSTHSILACNKY  242 (619)
T ss_dssp             SSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------C---CCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred             CCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCc---eEEEEeCC-EEEEecCCCCEEEEEECC
Confidence            2344568899999876665554 45677777765433221111011222   35566555 444454556777777754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.49  E-value=4.8e-05  Score=81.47  Aligned_cols=240  Identities=13%  Similarity=0.095  Sum_probs=145.1

Q ss_pred             CCeEEEeCCCEEEEEeCCCCccccccccC-C----CCcEE-EEECCCCCEEEEEe-----CCCcEEEEcCCCCceeeEEE
Q 007283           28 SNSILYTNGRSVIILDLSNPLQVSIYGEH-A----YPATV-ARFSPNGEWIASAD-----VSGTVRIWGAHNDHVLKKEF   96 (609)
Q Consensus        28 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~h-~----~~v~~-~~~sp~g~~las~~-----~d~~i~vWd~~~~~~~~~~~   96 (609)
                      +..++...++.++.+|..+++++-.+..+ .    ..+.. ..+ .++.+++..+     .++.|+.+|..+++.+- .+
T Consensus       129 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W-~~  206 (677)
T 1kb0_A          129 GKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKW-RW  206 (677)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE-EE
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEE-Ee
Confidence            33333345678999999988876555433 1    11211 111 1455544433     27899999999987543 23


Q ss_pred             eeccc--------------------------------ceeEEEECCCCCEEEEEECCC------------C----cceEE
Q 007283           97 RVLSG--------------------------------RIDDLQWSPDGLRIVACGDGK------------G----KSLVR  128 (609)
Q Consensus        97 ~~~~~--------------------------------~v~~~~~spdg~~l~~~~~~~------------~----~~~~~  128 (609)
                      .....                                ....++++|++.++.....+.            +    ...+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~  286 (677)
T 1kb0_A          207 FSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIV  286 (677)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             ccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEE
Confidence            22111                                113578889877666543211            0    01245


Q ss_pred             EEEcCCCCeeEEEec--CC-------ccEEEEEEeeCCC--eEEEEecCCCeEEEEeCCCCceeeeccCc----------
Q 007283          129 AFMWDSGTNVGEFDG--HS-------RRVLSCAFKPSRP--FRIATCGEDFLVNFYEGPPFKFKLSHRGH----------  187 (609)
Q Consensus       129 ~~~~~~~~~~~~~~~--h~-------~~v~~~~~~p~~~--~~i~t~~~d~~i~~~~~~~~~~~~~~~~h----------  187 (609)
                      .++.++++.+..+..  |.       ....-.....++.  ..++.++.++.+.++|..+++....+.-.          
T Consensus       287 AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~  366 (677)
T 1kb0_A          287 ALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDK  366 (677)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECT
T ss_pred             EEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCC
Confidence            556667777766643  21       1122234444663  45888999999999998888765432210          


Q ss_pred             -ccce------------------------EEEEEcCCCCEEEEEeC----------------------------------
Q 007283          188 -SNFV------------------------NCVRFSPDGSKFISVSS----------------------------------  208 (609)
Q Consensus       188 -~~~v------------------------~~l~~s~dg~~l~s~~~----------------------------------  208 (609)
                       ...+                        ..++|+|++.++.+...                                  
T Consensus       367 ~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~  446 (677)
T 1kb0_A          367 HGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFF  446 (677)
T ss_dssp             TSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEE
T ss_pred             CCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccccccc
Confidence             0011                        25688999887766543                                  


Q ss_pred             ---------CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEecc
Q 007283          209 ---------DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTP  276 (609)
Q Consensus       209 ---------d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~  276 (609)
                               .+.+..||..+++.+....    +...+.+..+.+++.+++.++.|+.++.||..   .++.+..+..
T Consensus       447 ~~~~~~~~~~g~l~A~D~~tG~~~W~~~----~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~---tG~~lw~~~~  516 (677)
T 1kb0_A          447 NAEPPKSKPFGRLLAWDPVAQKAAWSVE----HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAA---TGEKLWEAPT  516 (677)
T ss_dssp             CSSCCCSCCEEEEEEEETTTTEEEEEEE----ESSSCCCCEEEETTTEEEEECTTSEEEEEETT---TCCEEEEEEC
T ss_pred             ccccCCCCCccEEEEEeCCCCcEEeecC----CCCCCcCcceEeCCCEEEEECCCCcEEEEECC---CCceeeeeeC
Confidence                     2678999999998776653    22334445566778888899999999999987   4666666543

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.48  E-value=0.0032  Score=68.91  Aligned_cols=520  Identities=10%  Similarity=0.010  Sum_probs=265.4

Q ss_pred             eeEEeecCCCC-eEEEeCCCEEEEEeCCCCcccccc-c---c---CCCCcEEEEECC--CCCEEEEEeCCCcEEEEcCCC
Q 007283           19 GILISGHPKSN-SILYTNGRSVIILDLSNPLQVSIY-G---E---HAYPATVARFSP--NGEWIASADVSGTVRIWGAHN   88 (609)
Q Consensus        19 ~~~~~~~~~~~-~l~~~~~~~~~i~~~~~~~~~~~~-~---~---h~~~v~~~~~sp--~g~~las~~~d~~i~vWd~~~   88 (609)
                      ...|...++|. .-+.+.++.+..||..+.+-.... .   .   ....|.++...+  +|++.+.. .++.+..++..+
T Consensus        68 I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t-~~~gl~~~~~~~  146 (781)
T 3v9f_A           68 LNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCT-YYRGIEYLDIAT  146 (781)
T ss_dssp             EEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEE-SSSCEEEEETTT
T ss_pred             cceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEE-CCCCeeEEECCC
Confidence            44677777787 555555436888998765432211 1   1   123588998888  88876643 344577788766


Q ss_pred             CceeeEEEee------cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe--------cCCccEEEEEEe
Q 007283           89 DHVLKKEFRV------LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD--------GHSRRVLSCAFK  154 (609)
Q Consensus        89 ~~~~~~~~~~------~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~h~~~v~~~~~~  154 (609)
                      ++..  .+..      ....|.++...++|...+.... .+   +..++-.... ...+.        -....|.++...
T Consensus       147 ~~~~--~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~-~G---l~~~~~~~~~-~~~~~~~~~~~~~l~~~~i~~i~~d  219 (781)
T 3v9f_A          147 GKFT--HYNKSTVPALPSEQTWTATEAEDGKLYIGHVE-GG---LSILSLNDKS-VKHFVHDPQNPNSLPGNDVRCIYKD  219 (781)
T ss_dssp             TEEE--EESTTTCTTCSCCCEEEEEEEETTEEEEEETT-TE---EEEEETTTTE-EEEECC--------CCSSEEEEEEC
T ss_pred             CeEE--eeccCcccCCCccceEEEEECCCCCEEEEecC-CC---eEEEcCCCCc-eEeeecCCCCcccCCCCceeEEEEc
Confidence            5421  1211      1245788888888876665422 11   1222222221 11221        013468888888


Q ss_pred             eCCCeEEEEecCCCeEEEEeCCCCceeeecc-------CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC
Q 007283          155 PSRPFRIATCGEDFLVNFYEGPPFKFKLSHR-------GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS  227 (609)
Q Consensus       155 p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~-------~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~  227 (609)
                      +++..-++  ..+ -+..|+....+...-..       -....|.++...++|. |..|+..+-+.+++..+........
T Consensus       220 ~~g~lwig--t~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~  295 (781)
T 3v9f_A          220 TNGNIWIG--TSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQ  295 (781)
T ss_dssp             TTCCEEEE--ETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-------
T ss_pred             CCCCEEEE--eCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeec
Confidence            88764333  334 47778866544332111       1235689999988886 4557765678888876654221110


Q ss_pred             -----------cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccC----CCCCc-cceEEEEEE
Q 007283          228 -----------PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPS----GSGGV-DDMLVGCLW  291 (609)
Q Consensus       228 -----------~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~  291 (609)
                                 ...-....|.++...++|.+. .|+.++-|..++....   . ...+...    ..... ...+.+...
T Consensus       296 ~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~lW-igt~~~Gl~~~~~~~~---~-~~~~~~~~~~~~~~~l~~~~v~~i~~  370 (781)
T 3v9f_A          296 IRFEFIREGDNNYSLSNASARYIFQDSFNNIW-IGTWGGGINFISNAPP---T-FHTWSYSPTQMNESSLSNKVVSSVCD  370 (781)
T ss_dssp             --CEEECBCSSTTSBSSSCEEEEEECSSCCEE-EEEBSSCEEEECSSCC---S-CEEEC----CCCSSCCSSSCEEEEEE
T ss_pred             cccccccCCCCCCCCCCCeEEEEEEeCCCCEE-EEecCCeEEEeCCCCC---c-ceeeccCccccccCCCCCcceEEEEE
Confidence                       001134579999999888644 5555677888886532   1 1122110    01111 122233332


Q ss_pred             c-CCeEEEEEcCCcEEEEeCCCCCCCce--eeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc--cc
Q 007283          292 Q-NDFLVIVSLGGTISIFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR--KE  366 (609)
Q Consensus       292 ~-~~~~~~~~~~g~i~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~--~~  366 (609)
                      . ...+.+++.++.+..++.........  ........|.++.... ++ .+..|+.++-+..++...+.......  ..
T Consensus       371 d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~  448 (781)
T 3v9f_A          371 DGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDS-EG-NLWFGTYLGNISYYNTRLKKFQIIELEKNE  448 (781)
T ss_dssp             CTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECT-TS-CEEEEETTEEEEEECSSSCEEEECCSTTTC
T ss_pred             cCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECC-CC-CEEEEeccCCEEEEcCCCCcEEEeccCCCC
Confidence            3 45677777677777776532110000  0012335677776532 33 34456666667777665432222211  12


Q ss_pred             ccceeEeeee-CCcEEEEeccceEEEEeccCCccccccccc-cC-CCCceeEeeccC-CcEEEEEecccEEEeeCC-eee
Q 007283          367 NSQIKCFAAI-EEEIVTSGFDNKIWRVSLQGDQCGYANSID-IG-SQPKDLSVALHY-PELVLVSTDSGVVLLRGA-EVV  441 (609)
Q Consensus       367 ~~~~~~~~~~-~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~  441 (609)
                      ...+.++... .+.+..+.. .-+.+++............. .. .......+..+. +.+.+.+...|+..+... ...
T Consensus       449 ~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~  527 (781)
T 3v9f_A          449 LLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLV  527 (781)
T ss_dssp             CCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEE
T ss_pred             CCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeE
Confidence            2345555544 445666655 56777765543321110000 00 011122333333 334444444676666422 222


Q ss_pred             EEecc-----CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecC-CCceEEEEECCCCCEEEEEeCCCeE
Q 007283          442 STINL-----RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH-RGAVSVIRYSPDVSMFASGDVNREA  515 (609)
Q Consensus       442 ~~~~~-----~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h-~~~i~~v~~s~~~~~l~s~s~d~~v  515 (609)
                      ..+..     ...+.++...++|...++. .+|.|..|+.+++.+.......+- ...|.++...++|.+.+++ .+| +
T Consensus       528 ~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l  604 (781)
T 3v9f_A          528 RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-I  604 (781)
T ss_dssp             EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEEECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-E
T ss_pred             EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEEccccCCCCCceEEEEEECCCCCEEEEc-CCc-e
Confidence            22221     2346788888888866554 466557887665543211110111 2357888888899877764 344 7


Q ss_pred             EEEEccCCceEEee-ecC---CCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          516 IVWDRVSREVKLKN-MLY---HTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       516 ~iwd~~~~~~~~~~-~~~---h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      ..+|..+.....-. ..+   ..-...++...++|++++ |+.+| +..++.
T Consensus       605 ~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~f~p  654 (781)
T 3v9f_A          605 SCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYF-GSING-LCFFNP  654 (781)
T ss_dssp             EEEETTTTEEEEECGGGTCCSSCEEEEEEEECTTSCEEE-EETTE-EEEECS
T ss_pred             EEEECCCCceEEecccCCccccccccCceEECCCCEEEE-ECCCc-eEEECh
Confidence            77786654432110 011   111235777788888665 66677 444553

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.48  E-value=4.7e-05  Score=81.77  Aligned_cols=268  Identities=12%  Similarity=0.072  Sum_probs=151.4

Q ss_pred             CCCEEEEEeCCCCccccccccCCCC----------c-EEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee--ccc
Q 007283           35 NGRSVIILDLSNPLQVSIYGEHAYP----------A-TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV--LSG  101 (609)
Q Consensus        35 ~~~~~~i~~~~~~~~~~~~~~h~~~----------v-~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~--~~~  101 (609)
                      ..+.++.+|..+++++-.+..+...          + ..+++  .+..|+.++.|+.|..+|..+++.+-. +..  ...
T Consensus        78 ~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~-~~~~~~~~  154 (689)
T 1yiq_A           78 PFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWS-VDTRADHK  154 (689)
T ss_dssp             GGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE-EECCSCTT
T ss_pred             CCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeee-ecCcCCCC
Confidence            3467888888888876544432210          1 11222  356777788899999999999875432 322  111


Q ss_pred             ceeEEEECC---CCCEEEEEECCC--CcceEEEEEcCCCCeeEEEecCC-------------------------------
Q 007283          102 RIDDLQWSP---DGLRIVACGDGK--GKSLVRAFMWDSGTNVGEFDGHS-------------------------------  145 (609)
Q Consensus       102 ~v~~~~~sp---dg~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~-------------------------------  145 (609)
                      ....+..+|   ++..++..+...  ....+..++-++++.+..+....                               
T Consensus       155 ~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~  234 (689)
T 1yiq_A          155 RSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGG  234 (689)
T ss_dssp             SCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEEC
T ss_pred             CCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCC
Confidence            112222233   554444322110  12346666767788777664210                               


Q ss_pred             ccEEEEEEeeCCCeEEEEecCCC-------------------eEEEEeCCCCceeeeccC--cc-------cceEEEEEc
Q 007283          146 RRVLSCAFKPSRPFRIATCGEDF-------------------LVNFYEGPPFKFKLSHRG--HS-------NFVNCVRFS  197 (609)
Q Consensus       146 ~~v~~~~~~p~~~~~i~t~~~d~-------------------~i~~~~~~~~~~~~~~~~--h~-------~~v~~l~~s  197 (609)
                      ..-...+++|++.. +..+..++                   .+..+|..+++..-.+..  |.       .........
T Consensus       235 ~~w~~~~~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~  313 (689)
T 1yiq_A          235 TAWDSFAYDPELNL-LYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELP  313 (689)
T ss_dssp             CCCSCEEEETTTTE-EEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred             ccccceeEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeec
Confidence            00124678887775 55565554                   388889888877655432  31       112222222


Q ss_pred             CCCC---EEEEEeCCCcEEEEeCCCCccccccCcCC-------------------------CCcc-----------ceEE
Q 007283          198 PDGS---KFISVSSDKKGIIYDGKTADKIGELSPED-------------------------GHKG-----------SVYA  238 (609)
Q Consensus       198 ~dg~---~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-------------------------~h~~-----------~V~~  238 (609)
                      .+|+   .++.++.+|.++++|.++++.+.......                         ....           .-..
T Consensus       314 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~  393 (689)
T 1yiq_A          314 IDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQP  393 (689)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSC
T ss_pred             cCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCc
Confidence            3565   68888999999999999998763221100                         0000           0123


Q ss_pred             EEECCCCCeEEEEeC---------------------------------------------CCcEEEeecccCCCCceEEE
Q 007283          239 VSWSPDGKQVLTASA---------------------------------------------DKSAKVWDISEDNHGKLKKT  273 (609)
Q Consensus       239 l~~spd~~~l~s~s~---------------------------------------------d~~i~iwd~~~~~~~~~~~~  273 (609)
                      ++|+|+..+++....                                             +|.|+.||+.   .++.+-.
T Consensus       394 ~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~---tG~~~W~  470 (689)
T 1yiq_A          394 MSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPV---KQQAAWE  470 (689)
T ss_dssp             CEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETT---TTEEEEE
T ss_pred             ceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECC---CCCeEeE
Confidence            688888877776532                                             3668888876   3444433


Q ss_pred             eccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCC
Q 007283          274 LTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL  313 (609)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~  313 (609)
                      ......  ....  .....+.+++.++.++.++.|+....
T Consensus       471 ~~~~~~--~~~g--~~~tagglvf~gt~dg~l~a~D~~tG  506 (689)
T 1yiq_A          471 VPYVTI--FNGG--TLSTAGNLVFEGSADGRVIAYAADTG  506 (689)
T ss_dssp             EEESSS--CCCC--EEEETTTEEEEECTTSEEEEEETTTC
T ss_pred             ccCCCC--ccCc--cceECCCEEEEECCCCcEEEEECCCC
Confidence            322211  0111  12235678888999999999997654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.44  E-value=0.00079  Score=66.50  Aligned_cols=299  Identities=9%  Similarity=0.011  Sum_probs=156.5

Q ss_pred             CCEEEEEeCCCcEEEEcCCCCceeeEEEeec---------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE
Q 007283           69 GEWIASADVSGTVRIWGAHNDHVLKKEFRVL---------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG  139 (609)
Q Consensus        69 g~~las~~~d~~i~vWd~~~~~~~~~~~~~~---------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~  139 (609)
                      +..|..++.++.|..+|..+++.+- .+...         ...+...-- .++.++++...+.   .+..++-++++.+.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~~~~g---~l~a~d~~tG~~~W  127 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIW-SVSLAEKDGWFSKEPALLSGGVT-VSGGHVYIGSEKA---QVYALNTSDGTVAW  127 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEE-EEECCC---CCSCCCCCEEEEEE-EETTEEEEEETTS---EEEEEETTTCCEEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceee-eecCccccccccccCcccccCce-EeCCEEEEEcCCC---EEEEEECCCCCEEE
Confidence            5566667778899999998877542 22221         112221111 1233444443221   34455656677666


Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccce-----EEEEEcCCCCEEEEEeCCCcEEE
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV-----NCVRFSPDGSKFISVSSDKKGII  214 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v-----~~l~~s~dg~~l~s~~~d~~i~i  214 (609)
                      .............. .++  .+..+..++.+..+|..+++..-.+.......     ......  +..++.++.++.+..
T Consensus       128 ~~~~~~~~~~~p~~-~~~--~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          128 QTKVAGEALSRPVV-SDG--LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA  202 (376)
T ss_dssp             EEECSSCCCSCCEE-ETT--EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred             EEeCCCceEcCCEE-ECC--EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence            55443221111122 233  46677788889999988777654433221110     111222  346777888999999


Q ss_pred             EeCCCCccccccCcCCCCcc-----ceEEEEECC--CCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEE
Q 007283          215 YDGKTADKIGELSPEDGHKG-----SVYAVSWSP--DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLV  287 (609)
Q Consensus       215 wd~~~~~~~~~~~~~~~h~~-----~V~~l~~sp--d~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (609)
                      +|..+++.+...... ...+     .+..+.-.|  .+..++.++.++.+..+|...   ++..-......       ..
T Consensus       203 ~d~~tG~~~w~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~t---G~~~w~~~~~~-------~~  271 (376)
T 3q7m_A          203 VLMEQGQMIWQQRIS-QATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRS---GQIMWKRELGS-------VN  271 (376)
T ss_dssp             EETTTCCEEEEEECC-C-----------CCCCCCEEETTEEEEECTTSCEEEEETTT---CCEEEEECCCC-------EE
T ss_pred             EECCCCcEEEEEecc-cCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCC---CcEEeeccCCC-------CC
Confidence            999988876554211 0000     000011112  245677778899999999863   44443332111       12


Q ss_pred             EEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeee-CCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccc
Q 007283          288 GCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLS-GHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKE  366 (609)
Q Consensus       288 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~  366 (609)
                      .....++.+++++.++.+..++...... ..... .....+......   +..++.++.+|.+..++..++.........
T Consensus       272 ~~~~~~~~l~~~~~~g~l~~~d~~tG~~-~w~~~~~~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~  347 (376)
T 3q7m_A          272 DFIVDGNRIYLVDQNDRVMALTIDGGVT-LWTQSDLLHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGRFVAQQKVD  347 (376)
T ss_dssp             EEEEETTEEEEEETTCCEEEEETTTCCE-EEEECTTTTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECC
T ss_pred             CceEECCEEEEEcCCCeEEEEECCCCcE-EEeecccCCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCcEEEEEecC
Confidence            2334577888888888998888754421 11111 111122222222   256788888999999987765432111110


Q ss_pred             ccce-eEeeeeCCcEEEEeccceEEEE
Q 007283          367 NSQI-KCFAAIEEEIVTSGFDNKIWRV  392 (609)
Q Consensus       367 ~~~~-~~~~~~~~~~~~~~~d~~i~~~  392 (609)
                      ...+ ......++.++....++.++.+
T Consensus       348 ~~~~~~~~~~~~~~l~v~~~~G~l~~~  374 (376)
T 3q7m_A          348 SSGFQTEPVAADGKLLIQAKDGTVYSI  374 (376)
T ss_dssp             TTCBCSCCEEETTEEEEEBTTSCEEEE
T ss_pred             CCcceeCCEEECCEEEEEeCCCEEEEE
Confidence            1111 1122345566666666666655

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.38  E-value=1.2e-07  Score=93.91  Aligned_cols=179  Identities=8%  Similarity=-0.057  Sum_probs=93.0

Q ss_pred             CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCcc
Q 007283           68 NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRR  147 (609)
Q Consensus        68 ~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  147 (609)
                      ++.+|++++.|+.|..||..+++.+ ..+..  +.+.+..+.+++..+++.+.+.   .++.++.++++.+..+..+...
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~-W~~~~--~~~~s~p~~~~g~~~v~~s~dg---~l~a~d~~tG~~~w~~~~~~~~   81 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIK-WTLKE--DPVLQVPTHVEEPAFLPDPNDG---SLYTLGSKNNEGLTKLPFTIPE   81 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEE-EEEEC--CCSCCCC-----CCEEECTTTC---CEEEC-----CCSEECSCCHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEE-EEecC--CCceecceEcCCCEEEEeCCCC---EEEEEECCCCceeeeeeccCcc
Confidence            5778889999999999999998754 33443  4555555667776655532221   2333333356555555433211


Q ss_pred             -EEE-EEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccc
Q 007283          148 -VLS-CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE  225 (609)
Q Consensus       148 -v~~-~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~  225 (609)
                       +.+ ..+. .+. .+++++.|+.+..||..+++....+..+.    ...++|++..+++++.|+.+..||.++++.+..
T Consensus        82 ~~~~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~  155 (369)
T 2hz6_A           82 LVQASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWN  155 (369)
T ss_dssp             HHTTCSCC-------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCE
T ss_pred             ccccCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEe
Confidence             110 0111 222 46778888999999998887766655443    235677888899999999999999999887655


Q ss_pred             cCcCCCCccceEEEEECCCC---CeEEEEeCCCcEEEeecc
Q 007283          226 LSPEDGHKGSVYAVSWSPDG---KQVLTASADKSAKVWDIS  263 (609)
Q Consensus       226 ~~~~~~h~~~V~~l~~spd~---~~l~s~s~d~~i~iwd~~  263 (609)
                      +..     .......+.++.   ..++.++.|+.++.||..
T Consensus       156 ~~~-----~~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~  191 (369)
T 2hz6_A          156 ATY-----FDYAASLPEDDVDYKMSHFVSNGDGLVVTVDSE  191 (369)
T ss_dssp             EEE-----EEECCBCCCCCTTCCCCEEEEETSCEEEEECTT
T ss_pred             Eec-----ccccCccccCCccccceEEEECCCCEEEEEECC
Confidence            421     111223344432   567778899999999986

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.34  E-value=0.00012  Score=78.49  Aligned_cols=240  Identities=12%  Similarity=0.073  Sum_probs=142.2

Q ss_pred             CCeEEEeCCCEEEEEeCCCCcccccccc--CCCCcEEEEECC---CCCEEEEEe-----CCCcEEEEcCCCCceeeEEEe
Q 007283           28 SNSILYTNGRSVIILDLSNPLQVSIYGE--HAYPATVARFSP---NGEWIASAD-----VSGTVRIWGAHNDHVLKKEFR   97 (609)
Q Consensus        28 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~--h~~~v~~~~~sp---~g~~las~~-----~d~~i~vWd~~~~~~~~~~~~   97 (609)
                      +..++...++.++.+|..+++++-.+..  +......+..+|   +|..++..+     .++.|+.||..+++.+- .+.
T Consensus       122 g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W-~~~  200 (689)
T 1yiq_A          122 GKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAW-RFY  200 (689)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE-EEE
T ss_pred             CEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEE-Eec
Confidence            3333333467889999988887544432  211111222233   666665433     37899999999987543 232


Q ss_pred             ecc-------------------------------cceeEEEECCCCCEEEEEECCCC------------c----ceEEEE
Q 007283           98 VLS-------------------------------GRIDDLQWSPDGLRIVACGDGKG------------K----SLVRAF  130 (609)
Q Consensus        98 ~~~-------------------------------~~v~~~~~spdg~~l~~~~~~~~------------~----~~~~~~  130 (609)
                      ...                               .....++++|++.++.....+..            .    ..+..+
T Consensus       201 ~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~Al  280 (689)
T 1yiq_A          201 TVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAV  280 (689)
T ss_dssp             SSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEE
T ss_pred             ccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence            110                               01125788888766555432210            0    125567


Q ss_pred             EcCCCCeeEEEec--CC-------ccEEEEEEeeCCC--eEEEEecCCCeEEEEeCCCCceeeecc--C-----------
Q 007283          131 MWDSGTNVGEFDG--HS-------RRVLSCAFKPSRP--FRIATCGEDFLVNFYEGPPFKFKLSHR--G-----------  186 (609)
Q Consensus       131 ~~~~~~~~~~~~~--h~-------~~v~~~~~~p~~~--~~i~t~~~d~~i~~~~~~~~~~~~~~~--~-----------  186 (609)
                      +.++++.+..+..  |.       .+........++.  ..++.++.++.+.++|..+++......  .           
T Consensus       281 D~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~  360 (689)
T 1yiq_A          281 NADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKT  360 (689)
T ss_dssp             ETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTT
T ss_pred             EccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccC
Confidence            7778888877653  21       1222223333443  257888999999999988887652110  0           


Q ss_pred             ---------------ccc-----------ceEEEEEcCCCCEEEEEeC--------------------------------
Q 007283          187 ---------------HSN-----------FVNCVRFSPDGSKFISVSS--------------------------------  208 (609)
Q Consensus       187 ---------------h~~-----------~v~~l~~s~dg~~l~s~~~--------------------------------  208 (609)
                                     ...           .-..++|+|+..++.+...                                
T Consensus       361 ~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p  440 (689)
T 1yiq_A          361 GRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMP  440 (689)
T ss_dssp             TEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCC
T ss_pred             CCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccC
Confidence                           000           0123688998777666532                                


Q ss_pred             -------------CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEec
Q 007283          209 -------------DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       209 -------------d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                                   ++.+..||..+++.+.....    ...+..-.++..+.+++.++.|+.++.||.+   .++.+-.+.
T Consensus       441 ~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~tagglvf~gt~dg~l~a~D~~---tG~~lw~~~  513 (689)
T 1yiq_A          441 EGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY----VTIFNGGTLSTAGNLVFEGSADGRVIAYAAD---TGEKLWEQP  513 (689)
T ss_dssp             SSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETT---TCCEEEEEE
T ss_pred             cccccCCCCCCCcceeEEEEECCCCCeEeEccC----CCCccCccceECCCEEEEECCCCcEEEEECC---CCccceeee
Confidence                         36789999999987766532    1223333556678899999999999999987   466665554

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.34  E-value=3.3e-05  Score=74.86  Aligned_cols=217  Identities=9%  Similarity=-0.038  Sum_probs=136.5

Q ss_pred             CCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEE
Q 007283           27 KSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDL  106 (609)
Q Consensus        27 ~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~  106 (609)
                      ++...+...++.+..+|.. ++....+..+...+.++.+.++|++.+ +..++.|..+|.. ++. ...+......+..+
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~v-gt~~~~l~~~d~~-g~~-~~~~~~~~~~~~~~  182 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYV-GSNDNYLYAINPD-GTE-KWRFKTNDAITSAA  182 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEE-ECTTSEEEEECTT-SCE-EEEEECSSCCCSCC
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEE-EcCCCEEEEECCC-CCE-eEEEecCCCceeee
Confidence            4554444456788889987 555444444555577788888888555 5567889999987 543 23344445567788


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccC
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRG  186 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~  186 (609)
                      .+.++|..+++.  +.    +..++ ..+..+..+......+.++...+++.  +..+..++.+..++. .++....+..
T Consensus       183 ~~d~~g~l~v~t--~~----l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~--l~v~t~~~gl~~~~~-~g~~~~~~~~  252 (330)
T 3hxj_A          183 SIGKDGTIYFGS--DK----VYAIN-PDGTEKWNFYAGYWTVTRPAISEDGT--IYVTSLDGHLYAINP-DGTEKWRFKT  252 (330)
T ss_dssp             EECTTCCEEEES--SS----EEEEC-TTSCEEEEECCSSCCCSCCEECTTSC--EEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             EEcCCCEEEEEe--CE----EEEEC-CCCcEEEEEccCCcceeceEECCCCe--EEEEcCCCeEEEECC-CCCEeEEeeC
Confidence            888888766654  11    23333 34455555555556677888888775  444555666777763 3443333333


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       187 h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ....+.++.+.++|. |..++.++.+..+|. +++.+..+..   ....+.++...++|+ |..++.+|.+++....
T Consensus       253 ~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~---~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~  323 (330)
T 3hxj_A          253 GKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFET---GSWIIATPVIDENGT-IYFGTRNGKFYALFNL  323 (330)
T ss_dssp             SSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEEC---SSCCCSCCEECTTCC-EEEECTTSCEEEEEC-
T ss_pred             CCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEc---CCccccceEEcCCCE-EEEEcCCCeEEEEecc
Confidence            333344566666665 666888888999996 5655444321   234466777777776 4557789999988754

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.30  E-value=0.00026  Score=68.36  Aligned_cols=237  Identities=11%  Similarity=0.021  Sum_probs=133.3

Q ss_pred             eeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccc------------c--------CCCCcEEEEECC-CCCEEEEEe
Q 007283           19 GILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYG------------E--------HAYPATVARFSP-NGEWIASAD   76 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~------------~--------h~~~v~~~~~sp-~g~~las~~   76 (609)
                      |-.+..+|+|+.++.. .++.+..|+..++.... +.            +        .......+++.| +|+++++..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVD-FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEE-EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEE-EecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            4467788888745443 45788888876644321 21            0        013478899998 777666543


Q ss_pred             CCCcEEEEcCCCCceeeEEEeec-----ccceeEEEECC-CCCEEEEEECCC------------CcceEEEEEcCCC-Ce
Q 007283           77 VSGTVRIWGAHNDHVLKKEFRVL-----SGRIDDLQWSP-DGLRIVACGDGK------------GKSLVRAFMWDSG-TN  137 (609)
Q Consensus        77 ~d~~i~vWd~~~~~~~~~~~~~~-----~~~v~~~~~sp-dg~~l~~~~~~~------------~~~~~~~~~~~~~-~~  137 (609)
                       .+.|..+|..++...  .+...     ......+++.| +|...++-....            .....+++.++.. ..
T Consensus       100 -~~~i~~~d~~~g~~~--~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~  176 (322)
T 2fp8_A          100 -YYHLSVVGSEGGHAT--QLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKE  176 (322)
T ss_dssp             -TTEEEEECTTCEECE--EEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTE
T ss_pred             -CCCEEEEeCCCCEEE--EecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCE
Confidence             344888887654321  12111     12467899999 997766643210            0011234444432 22


Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC---ceeeeccCcccceEEEEEcCCCCEEEEEeC------
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF---KFKLSHRGHSNFVNCVRFSPDGSKFISVSS------  208 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~------  208 (609)
                      +..+.........++++|++..++++-...+.|..++....   ... .+..... ...+++.++|+++++...      
T Consensus       177 ~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~  254 (322)
T 2fp8_A          177 TTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGNM  254 (322)
T ss_dssp             EEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSST
T ss_pred             EEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCcccccc
Confidence            22222112234568999998865566566677777775431   111 1111112 577899999986666544      


Q ss_pred             ----CCcEEEEeCCCCccccccCcCCCC-ccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          209 ----DKKGIIYDGKTADKIGELSPEDGH-KGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       209 ----d~~i~iwd~~~~~~~~~~~~~~~h-~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                          .+.+..+|.. ++.+..+....+. -..+.++++ .+++++++....+.|..+++.
T Consensus       255 ~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          255 HGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             TSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC-
T ss_pred             cCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEecc
Confidence                4568888864 5554444221111 234566666 466666666677888888875

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.30  E-value=0.00011  Score=67.69  Aligned_cols=196  Identities=10%  Similarity=0.085  Sum_probs=125.3

Q ss_pred             CcEEEEECCCCCEEEEEeC--CCcEEEEcCCCCceeeEEEeeccc-ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC
Q 007283           59 PATVARFSPNGEWIASADV--SGTVRIWGAHNDHVLKKEFRVLSG-RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG  135 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~--d~~i~vWd~~~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  135 (609)
                      ....++|+|||++.++.+.  +++|++.|..+++.+.. +..... ....+++  +|.+|....-...  .+.+++.++.
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~-i~l~~~~fgeGi~~--~g~~lyv~t~~~~--~v~viD~~t~   96 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENI-HKMDDSYFGEGLTL--LNEKLYQVVWLKN--IGFIYDRRTL   96 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEE-EECCTTCCEEEEEE--ETTEEEEEETTCS--EEEEEETTTT
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEE-EecCCCcceEEEEE--eCCEEEEEEecCC--EEEEEECCCC
Confidence            3578999999877666543  67999999999886543 322121 1223444  4667766653322  3556666666


Q ss_pred             CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc-C-c---ccceEEEEEcCCCCEEEEEeCCC
Q 007283          136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR-G-H---SNFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~-~-h---~~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                      +.+..+.--...  ...+++++...+++- .++.+.+.|..+.+...... + +   ...++.+.|. +|..++....++
T Consensus        97 ~v~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~  172 (266)
T 2iwa_A           97 SNIKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTD  172 (266)
T ss_dssp             EEEEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSS
T ss_pred             cEEEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCC
Confidence            667776422111  234667877656554 57789999988877655432 1 1   1246788888 776666655678


Q ss_pred             cEEEEeCCCCccccccCcC--------CCC--ccceEEEEECCCCCe-EEEEeCCCcEEEeecc
Q 007283          211 KGIIYDGKTADKIGELSPE--------DGH--KGSVYAVSWSPDGKQ-VLTASADKSAKVWDIS  263 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~--------~~h--~~~V~~l~~spd~~~-l~s~s~d~~i~iwd~~  263 (609)
                      .|.+.|..+++.+..+...        ..+  ....+.++|+|+++. ++++...+++...++.
T Consensus       173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~  236 (266)
T 2iwa_A          173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH  236 (266)
T ss_dssp             EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence            9999999999887666421        001  124589999999864 5555567888888765

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.26  E-value=4.7e-07  Score=89.64  Aligned_cols=195  Identities=11%  Similarity=0.078  Sum_probs=95.4

Q ss_pred             eCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeeccc-cee-EEEECCC
Q 007283           34 TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSG-RID-DLQWSPD  111 (609)
Q Consensus        34 ~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~-~v~-~~~~spd  111 (609)
                      ..++.++.||..+++.+-.+..  +.+.+..+.++|+++++++.|+.|+.||..+++.+. .++.+.. .+. ..+++.+
T Consensus        16 s~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w-~~~~~~~~~~~~sp~~~~~   92 (369)
T 2hz6_A           16 TLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLT-KLPFTIPELVQASPCRSSD   92 (369)
T ss_dssp             ETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSE-ECSCCHHHHHTTCSCC---
T ss_pred             cCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceee-eeeccCccccccCceEecC
Confidence            3457899999999888766655  456666677888888888899999999998876432 2222211 111 1122233


Q ss_pred             CCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccce
Q 007283          112 GLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV  191 (609)
Q Consensus       112 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v  191 (609)
                      + .+++.+.   ...+..++.++++.+..+..+..    ..++|++. .+++++.|+.+..||..+++..-.+..+.  .
T Consensus        93 ~-~v~~g~~---dg~v~a~D~~tG~~~w~~~~~~~----~~~~p~~~-~v~~~~~dg~v~a~d~~tG~~~W~~~~~~--~  161 (369)
T 2hz6_A           93 G-ILYMGKK---QDIWYVIDLLTGEKQQTLSSAFA----DSLSPSTS-LLYLGRTEYTITMYDTKTRELRWNATYFD--Y  161 (369)
T ss_dssp             ---CCCCEE---EEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE--E
T ss_pred             C-EEEEEeC---CCEEEEEECCCCcEEEEecCCCc----ccccccCC-EEEEEecCCEEEEEECCCCCEEEeEeccc--c
Confidence            4 3333221   11244455456666665554431    24456555 47778889999999988776543332111  1


Q ss_pred             EEEEEcCCC---CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceE-EEEECCCCC
Q 007283          192 NCVRFSPDG---SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY-AVSWSPDGK  246 (609)
Q Consensus       192 ~~l~~s~dg---~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~-~l~~spd~~  246 (609)
                      ....++++.   ..+++++.|+.+..||..+++.+....    ..+.+. ...+++++.
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~----~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          162 AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN----YASPVVAFYVWQREGL  216 (369)
T ss_dssp             CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE----CSSCEEEEEECTTSSC
T ss_pred             cCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec----CCCceEEEEEecCCce
Confidence            222344432   457778999999999999998766543    223343 334555554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.25  E-value=0.00015  Score=78.87  Aligned_cols=201  Identities=10%  Similarity=0.120  Sum_probs=110.3

Q ss_pred             cCCC-CcEEEEEC-CCCCEEEEE-eCCC----cEEEEcCCCC-ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcce
Q 007283           55 EHAY-PATVARFS-PNGEWIASA-DVSG----TVRIWGAHND-HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL  126 (609)
Q Consensus        55 ~h~~-~v~~~~~s-p~g~~las~-~~d~----~i~vWd~~~~-~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~  126 (609)
                      +|.. .+..++|| |||++||-+ +.+|    +|+++|+.++ +.+...+.   .....++|+|||+.|+.+..+.....
T Consensus       170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~  246 (751)
T 2xe4_A          170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRE  246 (751)
T ss_dssp             TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCE
T ss_pred             CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCC
Confidence            4554 67889999 999999843 3333    5999999887 53221121   22457899999999888765432222


Q ss_pred             EEEEEcCCCCe----eEEEe-cCCccEEEEEEeeCCCeEEEEecC--CCeEEEEeCCCC--ce--eeeccCcccceEEEE
Q 007283          127 VRAFMWDSGTN----VGEFD-GHSRRVLSCAFKPSRPFRIATCGE--DFLVNFYEGPPF--KF--KLSHRGHSNFVNCVR  195 (609)
Q Consensus       127 ~~~~~~~~~~~----~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~--d~~i~~~~~~~~--~~--~~~~~~h~~~v~~l~  195 (609)
                      .+++.++.+..    ...+. .+......+.|+|++..++.+...  ...+.+++....  +.  .....+.......+.
T Consensus       247 ~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~  326 (751)
T 2xe4_A          247 NKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQ  326 (751)
T ss_dssp             EEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEE
T ss_pred             CEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEe
Confidence            34555554321    22333 233456788999999976655533  234566676543  22  222333444455555


Q ss_pred             EcCCCCEEEEEeC-C----CcEEEEeCCCCccccc-cCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          196 FSPDGSKFISVSS-D----KKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       196 ~s~dg~~l~s~~~-d----~~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      |+. |+.|+..+. +    ..+..++..++..... +... .....+..+.+. .+.++++...++..++|-
T Consensus       327 ~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~-~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          327 MHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDH-SEDVFMESIAVR-SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             EET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECC-CSSEEEEEEEEC-SSEEEEEEEETTEEEEEE
T ss_pred             eee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECC-CCCcEEEEEEEE-CCEEEEEEEeCCEEEEEE
Confidence            543 555554443 3    2566667654222222 2111 111245556554 234556666677655553

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.24  E-value=0.00021  Score=65.09  Aligned_cols=185  Identities=15%  Similarity=0.171  Sum_probs=117.2

Q ss_pred             CcEEEEECCCCCEEEEEeCCC--cEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC
Q 007283           59 PATVARFSPNGEWIASADVSG--TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT  136 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~--~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  136 (609)
                      ....+.|+ ++.+..+.+.+|  .|++.|..+++++.. +.. ..........+++.+|....-..  ..+.+++.++.+
T Consensus        44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~-~~l-~~~~FgeGit~~g~~ly~ltw~~--~~v~v~D~~t~~  118 (262)
T 3nol_A           44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQ-IEL-GKRYFGEGISDWKDKIVGLTWKN--GLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEE-EEC-CTTCCEEEEEEETTEEEEEESSS--SEEEEEETTTCC
T ss_pred             ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEE-Eec-CCccceeEEEEeCCEEEEEEeeC--CEEEEEECccCc
Confidence            35788998 777777777766  899999999886543 332 23333333344566666654222  245566666777


Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeecc----Ccc-cceEEEEEcCCCCEEEEEeCCCc
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR----GHS-NFVNCVRFSPDGSKFISVSSDKK  211 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~----~h~-~~v~~l~~s~dg~~l~s~~~d~~  211 (609)
                      .+.++.-..   ....+.+++..++++-+ ...+.+.|..+++......    +.. ..++.+.|. +|+.++..-.+..
T Consensus       119 ~~~ti~~~~---eG~glt~dg~~L~~SdG-s~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~  193 (262)
T 3nol_A          119 QVRSFNYDG---EGWGLTHNDQYLIMSDG-TPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK  193 (262)
T ss_dssp             EEEEEECSS---CCCCEEECSSCEEECCS-SSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEEEECCC---CceEEecCCCEEEEECC-CCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCe
Confidence            777776322   22344466765455544 6778999988877655432    222 345667776 7776665556889


Q ss_pred             EEEEeCCCCccccccCcCC---------CCccceEEEEECCCCCeEEEEeC
Q 007283          212 GIIYDGKTADKIGELSPED---------GHKGSVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~---------~h~~~V~~l~~spd~~~l~s~s~  253 (609)
                      |.+.|.++++.+..+....         .-...-+.|+|+|+++.|+..+.
T Consensus       194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            9999999999766553210         01134589999999887777664

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.17  E-value=0.012  Score=62.04  Aligned_cols=205  Identities=6%  Similarity=-0.079  Sum_probs=112.7

Q ss_pred             cCceeEEeecCCCCeEEEeC--CCEEEEEeCCCCcc-ccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCce
Q 007283           16 RGRGILISGHPKSNSILYTN--GRSVIILDLSNPLQ-VSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHV   91 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~-~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~   91 (609)
                      -+.|..+.+++.++.|++..  .+.|..+++..... ...+..--.....+|+.+.++.|. +-...+.|.+-+.+... 
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-  117 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-  117 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-
Confidence            45688999999888887763  47888888865432 222322224578999999666555 44567889999887543 


Q ss_pred             eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeE
Q 007283           92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLV  170 (609)
Q Consensus        92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i  170 (609)
                      ........-.....+++.|.+.+|..+.-+.. ..+.....+. .....+ ...-.....++++|++..++.+=...+.|
T Consensus       118 ~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~-~~I~r~~~dG-~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I  195 (619)
T 3s94_A          118 RKVLFWQELDQPRAIALDPSSGFMYWTDWGEV-PKIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFI  195 (619)
T ss_dssp             CEEEECSSCSCCCCEEEETTTTEEEEEECSSS-CEEEEEETTS-CSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCE
T ss_pred             EEEEEeCCCCCCceEEEecCCCeEEEeccCCC-CEEEEEECCC-CceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeE
Confidence            22222223345778999997666665542321 2232333332 222222 23344568899998776555554555667


Q ss_pred             EEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc
Q 007283          171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       171 ~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      ...+...........+.......|++..+ ..+++-...+.|...|..+++...
T Consensus       196 ~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~~  248 (619)
T 3s94_A          196 HKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKYTGEGLR  248 (619)
T ss_dssp             EEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESSSCCCCE
T ss_pred             EEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECCCCcccE
Confidence            77765432222111212222345566555 334443456678888877665443

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.14  E-value=0.0031  Score=60.21  Aligned_cols=223  Identities=10%  Similarity=0.000  Sum_probs=124.3

Q ss_pred             CceeEEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCc--EEEEcCCCCceee
Q 007283           17 GRGILISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGT--VRIWGAHNDHVLK   93 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~--i~vWd~~~~~~~~   93 (609)
                      ..|-.+..+|+|+.++.. .++.|..+|...... ..+. -.+....++++|+|+++++......  |..++..+++...
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~-~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ-IHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEE-EEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceE-EEEe-CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEE
Confidence            355678899998855554 457888888765332 2222 2345889999999997776543333  5555655655321


Q ss_pred             EEEee-cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC---eeEEEe---------cCCccEEEEEEeeCCCeE
Q 007283           94 KEFRV-LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT---NVGEFD---------GHSRRVLSCAFKPSRPFR  160 (609)
Q Consensus        94 ~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~---------~h~~~v~~~~~~p~~~~~  160 (609)
                       .... .......++..+++..++ .....+    ++|.++...   .+....         +.......+  +|++..+
T Consensus       110 -~~~~~~~~~~~g~~~~~~~~~~v-~d~~~g----~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~l  181 (306)
T 2p4o_A          110 -LLTLPDAIFLNGITPLSDTQYLT-ADSYRG----AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFL  181 (306)
T ss_dssp             -EEECTTCSCEEEEEESSSSEEEE-EETTTT----EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEE
T ss_pred             -EEeCCCccccCcccccCCCcEEE-EECCCC----eEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEE
Confidence             1111 112234455556554333 322222    244444321   111000         111233444  7888776


Q ss_pred             EEEecCCCeEEEEeCCC-Cce--eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc--ccccCcCCCCccc
Q 007283          161 IATCGEDFLVNFYEGPP-FKF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK--IGELSPEDGHKGS  235 (609)
Q Consensus       161 i~t~~~d~~i~~~~~~~-~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~h~~~  235 (609)
                      +++-...+.|..++... ++.  ...+. .......++++++|+++++-...+.|.+++.. ++.  +..+.   .....
T Consensus       182 yv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~---~~~~~  256 (306)
T 2p4o_A          182 YVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAE---QGVIG  256 (306)
T ss_dssp             EEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGG---GTCTT
T ss_pred             EEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecc---cccCC
Confidence            77777778888888653 221  11111 11234567899999877766677899999875 443  21221   11245


Q ss_pred             eEEEEEC---CCCCeEEEEeCC
Q 007283          236 VYAVSWS---PDGKQVLTASAD  254 (609)
Q Consensus       236 V~~l~~s---pd~~~l~s~s~d  254 (609)
                      .++++|.   ||+..|+..+..
T Consensus       257 p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          257 STAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             EEEEEECCSTTTTTEEEEEECT
T ss_pred             ceEEEEecccCCCCEEEEECCC
Confidence            7899998   887766665543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.12  E-value=0.00026  Score=77.03  Aligned_cols=192  Identities=7%  Similarity=0.001  Sum_probs=105.8

Q ss_pred             eEEeec-CCCCeEEEeC---C---CEEEEEeCCCC-cccc-ccccCCCCcEEEEECCCCCEEEEEeCCC-----cEEEEc
Q 007283           20 ILISGH-PKSNSILYTN---G---RSVIILDLSNP-LQVS-IYGEHAYPATVARFSPNGEWIASADVSG-----TVRIWG   85 (609)
Q Consensus        20 ~~~~~~-~~~~~l~~~~---~---~~~~i~~~~~~-~~~~-~~~~h~~~v~~~~~sp~g~~las~~~d~-----~i~vWd   85 (609)
                      ....++ |||+.|+|..   |   ..+.++|+.++ +.+. .+.   .....++|+|||+.|+....|.     .|.+++
T Consensus       177 ~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~  253 (751)
T 2xe4_A          177 MEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHV  253 (751)
T ss_dssp             EEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEEEE
T ss_pred             eeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEEEE
Confidence            367889 9999999873   2   25999999887 5321 111   1134678999999888666542     567777


Q ss_pred             CCCCcee-eEEEee-cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC-ee--EEE-ecCCccEEEEEEeeCCCe
Q 007283           86 AHNDHVL-KKEFRV-LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT-NV--GEF-DGHSRRVLSCAFKPSRPF  159 (609)
Q Consensus        86 ~~~~~~~-~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~-~~--~~~-~~h~~~v~~~~~~p~~~~  159 (609)
                      +.++... ...+.. .......+.|||||++|+..........+.+++.+.+. ..  ..+ .+......+..|+.++. 
T Consensus       254 lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~g~~-  332 (751)
T 2xe4_A          254 MGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHGTSH-  332 (751)
T ss_dssp             TTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEETTTE-
T ss_pred             CCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeeeCCE-
Confidence            7664311 112222 12345678999999999877644444444455555431 12  333 23344555565554443 


Q ss_pred             EEEEecCC----CeEEEEeCCC-CceeeeccCccc--ceEEEEEcCCCC-EEEEEeCCCcEEE--EeC
Q 007283          160 RIATCGED----FLVNFYEGPP-FKFKLSHRGHSN--FVNCVRFSPDGS-KFISVSSDKKGII--YDG  217 (609)
Q Consensus       160 ~i~t~~~d----~~i~~~~~~~-~~~~~~~~~h~~--~v~~l~~s~dg~-~l~s~~~d~~i~i--wd~  217 (609)
                      ++.....+    ..+..++... ......+..|..  .+..+.+.  ++ ++++...++...|  ++.
T Consensus       333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEEC
T ss_pred             EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEec
Confidence            34444433    3455556543 222210112222  34555554  44 4556666775544  454

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.09  E-value=0.00096  Score=64.31  Aligned_cols=235  Identities=12%  Similarity=0.104  Sum_probs=128.4

Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee--------------------cccceeEEEECC-CCCEEEEE
Q 007283           60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV--------------------LSGRIDDLQWSP-DGLRIVAC  118 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~--------------------~~~~v~~~~~sp-dg~~l~~~  118 (609)
                      -..++++|+|+++.++..++.|..|+..+++..  .+..                    ....+..+++.| +|..+++ 
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~-   97 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFV--DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIV-   97 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEE--EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEE-
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceE--EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEE-
Confidence            456789999997777878899999988765432  2221                    012468899998 6654444 


Q ss_pred             ECCCCcceEEEEEcCCCCeeEEEec-----CCccEEEEEEee-CCCeEEEEec----------------CCCeEEEEeCC
Q 007283          119 GDGKGKSLVRAFMWDSGTNVGEFDG-----HSRRVLSCAFKP-SRPFRIATCG----------------EDFLVNFYEGP  176 (609)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~-----h~~~v~~~~~~p-~~~~~i~t~~----------------~d~~i~~~~~~  176 (609)
                      ..+.  . +..++.+.+ .+..+..     .......+++.| ++...++..+                .++.+..++..
T Consensus        98 d~~~--~-i~~~d~~~g-~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~  173 (322)
T 2fp8_A           98 DCYY--H-LSVVGSEGG-HATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPS  173 (322)
T ss_dssp             ETTT--E-EEEECTTCE-ECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETT
T ss_pred             ECCC--C-EEEEeCCCC-EEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCC
Confidence            2221  1 223332222 1222211     123467899999 8865444322                13567777765


Q ss_pred             CCceeeeccCcccceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcc--ccccCcCCCCccceEEEEECCCCCeEEEEeC
Q 007283          177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISV-SSDKKGIIYDGKTADK--IGELSPEDGHKGSVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd~~~~~~--~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~  253 (609)
                      ..+..... ......+.++|+|+|+.|..+ ...+.|..++......  ...+..   ..+ -..+++.++|.+.++...
T Consensus       174 ~~~~~~~~-~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~---~~g-P~gi~~d~~G~l~va~~~  248 (322)
T 2fp8_A          174 TKETTLLL-KELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK---IPN-PGNIKRNADGHFWVSSSE  248 (322)
T ss_dssp             TTEEEEEE-EEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE---CSS-EEEEEECTTSCEEEEEEE
T ss_pred             CCEEEEec-cCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe---CCC-CCCeEECCCCCEEEEecC
Confidence            55433221 112335678999999865555 5568899998764321  111111   112 577899999987776654


Q ss_pred             ----------CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEE-cCCcEEEEeCC
Q 007283          254 ----------DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVS-LGGTISIFSAN  311 (609)
Q Consensus       254 ----------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~i~~~~~~  311 (609)
                                .+.|..+|..    ++....+........... ..+...+..+++++ ..+.|..+++.
T Consensus       249 ~~~~~~~~~~~~~v~~~d~~----G~~~~~~~~~~g~~~~~~-~~~~~~~g~L~v~~~~~~~i~~~~~~  312 (322)
T 2fp8_A          249 ELDGNMHGRVDPKGIKFDEF----GNILEVIPLPPPFAGEHF-EQIQEHDGLLYIGTLFHGSVGILVYD  312 (322)
T ss_dssp             ETTSSTTSCEEEEEEEECTT----SCEEEEEECCTTTTTSCC-CEEEEETTEEEEECSSCSEEEEEEC-
T ss_pred             cccccccCCCccEEEEECCC----CCEEEEEECCCCCccccc-eEEEEeCCEEEEeecCCCceEEEecc
Confidence                      3567777753    455555543211111111 12223444555443 45566666643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.03  E-value=0.001  Score=60.58  Aligned_cols=183  Identities=12%  Similarity=0.102  Sum_probs=113.6

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCee
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV  138 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (609)
                      ....+.|+ ++++..+.+.+|.|++.|..+++++...   ........-..+++.+|....-..  ..+.+++.++.+.+
T Consensus        56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~---l~~~~FgeGit~~g~~Ly~ltw~~--~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME---RLGNIFAEGLASDGERLYQLTWTE--GLLFTWSGMPPQRE  129 (268)
T ss_dssp             CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE---ECTTCCEEEEEECSSCEEEEESSS--CEEEEEETTTTEEE
T ss_pred             ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE---CCCCcceeEEEEeCCEEEEEEccC--CEEEEEECCcCcEE
Confidence            35788887 4677778888889999999998876543   223333322233444555443211  23556666666777


Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccC--cc---cceEEEEEcCCCCEEEEEeCCCcEE
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRG--HS---NFVNCVRFSPDGSKFISVSSDKKGI  213 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~--h~---~~v~~l~~s~dg~~l~s~~~d~~i~  213 (609)
                      .++.-.. .=..+  .+++..++++- .+..+.+.|..+++......-  +.   ..++-+.|. +|+.++..-.+..|.
T Consensus       130 ~ti~~~~-eGwGL--t~Dg~~L~vSd-Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~  204 (268)
T 3nok_A          130 RTTRYSG-EGWGL--CYWNGKLVRSD-GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVL  204 (268)
T ss_dssp             EEEECSS-CCCCE--EEETTEEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEE
T ss_pred             EEEeCCC-ceeEE--ecCCCEEEEEC-CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEE
Confidence            7765322 11233  35666545554 477899999888776654321  21   245677777 776666555678999


Q ss_pred             EEeCCCCccccccCcC----------CCCccceEEEEECCCCCeEEEEe
Q 007283          214 IYDGKTADKIGELSPE----------DGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       214 iwd~~~~~~~~~~~~~----------~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      +.|.++++.+..+...          ..-...-+.|++.|+++.|+..+
T Consensus       205 vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          205 EIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999876654321          01123568999999877666554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.98  E-value=0.0074  Score=55.17  Aligned_cols=193  Identities=8%  Similarity=0.054  Sum_probs=124.9

Q ss_pred             CceeEEeecCCCCeEEEeC--CCEEEEEeCCCCcccccc--ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee
Q 007283           17 GRGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIY--GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~   92 (609)
                      +..-.++..|+++.|+...  ...++..|+. ++..+.+  .+. .....+++.++|+++++...++.+.+.++......
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i  104 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEV  104 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCE
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCee
Confidence            4566899999888776543  3678888887 6655544  332 46888999999998888767788888887654321


Q ss_pred             --eEEEe------ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC---CCeeEEEe-------cCCccEEEEEEe
Q 007283           93 --KKEFR------VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS---GTNVGEFD-------GHSRRVLSCAFK  154 (609)
Q Consensus        93 --~~~~~------~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~-------~h~~~v~~~~~~  154 (609)
                        ....+      ..+.....++|+|++++|.++.+...   ..++.|+.   ...+..+.       .+...+.+++++
T Consensus       105 ~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p---~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d  181 (255)
T 3qqz_A          105 KILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNP---IEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN  181 (255)
T ss_dssp             EEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSS---EEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred             eeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCC---ceEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence              12221      12345689999999988888775543   24555541   11122221       123457899999


Q ss_pred             eCCCeEEEEecCCCeEEEEeCCCCcee--eecc-Cc------ccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          155 PSRPFRIATCGEDFLVNFYEGPPFKFK--LSHR-GH------SNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       155 p~~~~~i~t~~~d~~i~~~~~~~~~~~--~~~~-~h------~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      |.....++.......+..+|.. ++..  ..+. +.      -.+...|+|.++|+++++ ++-..++.+.
T Consensus       182 p~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          182 QQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             TTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             CCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            9888777777888888888854 3222  2222 21      236789999999985555 5555444443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.95  E-value=0.015  Score=55.55  Aligned_cols=229  Identities=9%  Similarity=-0.076  Sum_probs=129.4

Q ss_pred             eEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCC---ceeeEEEeecccceeE
Q 007283           30 SILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHND---HVLKKEFRVLSGRIDD  105 (609)
Q Consensus        30 ~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~---~~~~~~~~~~~~~v~~  105 (609)
                      .|++.++..|...|+........... -.....++|++.+..|. +-..++.|+.++....   ......+.........
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g   81 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEECCCeEEEEECCCcceEehhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence            56777777888889877655443332 34578999998766555 4445788999988651   1111112222235678


Q ss_pred             EEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-CeEEEEeCCCCceeeec
Q 007283          106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNFYEGPPFKFKLSH  184 (609)
Q Consensus       106 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-~~i~~~~~~~~~~~~~~  184 (609)
                      +++.+.+..|..+....  ..+.+.+.+.......+.........++++|.+..++.+.... +.|...+..........
T Consensus        82 lavd~~~~~ly~~d~~~--~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~  159 (316)
T 1ijq_A           82 LAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (316)
T ss_dssp             EEEETTTTEEEEEETTT--TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             EEEeecCCeEEEEECCC--CEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEE
Confidence            99998766666554332  2345555553332222333445678999999777655554333 56666654321111111


Q ss_pred             cCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          185 RGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       185 ~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .......+.++++|++..|..+. ..+.|..+|..... ...+......-..-..+++. .+.++.+-...+.|..++..
T Consensus       160 ~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             ECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence            22334578899999877665554 55688888876432 22221100111224566664 35555566667788888753

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.94  E-value=0.052  Score=61.37  Aligned_cols=145  Identities=14%  Similarity=0.200  Sum_probs=92.6

Q ss_pred             CCEEEEEe----------CCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe
Q 007283          459 GSEAIIGS----------QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK  528 (609)
Q Consensus       459 g~~l~~gs----------~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~  528 (609)
                      ..++++|+          ..|.|++|++..+++... .-...+++|.+++-= +|+++|+  ....+++|++...+....
T Consensus       844 ~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv-~~~~v~g~v~al~~~-~g~Lla~--ig~~l~vy~l~~~~~L~~  919 (1158)
T 3ei3_A          844 NTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTV-AEKEVKGAVYSMVEF-NGKLLAS--INSTVRLYEWTTEKELRT  919 (1158)
T ss_dssp             CCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEE-EEEEESSCEEEEEEE-TTEEEEE--ETTEEEEEEECTTSCEEE
T ss_pred             CEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEE-EEEEcCCcCEEEeee-CCEEEEE--cCCEEEEEECCCCceEEE
Confidence            47888887          347899999976554322 223457889888632 4554444  347899999865432211


Q ss_pred             eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeE-eccccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTI-KGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       529 ~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~-~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ... +-..|..+.....+.+++.|+.-..|.+.........+..+ ..-+..+++++.|-++..++.+-.++++.+...+
T Consensus       920 ~~~-~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~t~l~aD~~gNl~vl~~~  998 (1158)
T 3ei3_A          920 ECN-HYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEILDDDNFLGAENAFNLFVCQKD  998 (1158)
T ss_dssp             EEE-ECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCSCBCEEEEEEEETTEEEEEETTSEEEEEEEC
T ss_pred             Eee-ccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecccccEEEEEEEccCcEEEEcCCCcEEEEecC
Confidence            111 11123333333357789999999988887664322222222 2345678999999877788889999999998776


Q ss_pred             C
Q 007283          608 P  608 (609)
Q Consensus       608 ~  608 (609)
                      +
T Consensus       999 ~  999 (1158)
T 3ei3_A          999 S  999 (1158)
T ss_dssp             T
T ss_pred             C
Confidence            5

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=97.92  E-value=0.003  Score=58.12  Aligned_cols=192  Identities=11%  Similarity=-0.029  Sum_probs=118.9

Q ss_pred             ceeEEeecCCCCeEEEeC---CCEEEEEeCCCCcccccccc-CCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCcee
Q 007283           18 RGILISGHPKSNSILYTN---GRSVIILDLSNPLQVSIYGE-HAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~---~~~~~i~~~~~~~~~~~~~~-h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~   92 (609)
                      .+-.+.++|||...++..   ++.+.++|+.+++....+.- .......++++  |+.| ++.-.++++-++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            344677888864334332   37999999999988765431 11122344454  5455 45556899999999887654


Q ss_pred             eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEec--CC---ccEEEEEEeeCCCeEEEEecCC
Q 007283           93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDG--HS---RRVLSCAFKPSRPFRIATCGED  167 (609)
Q Consensus        93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~---~~v~~~~~~p~~~~~i~t~~~d  167 (609)
                      . ++..-  .-....+++||++|+.+ ++.  ..+.+.+-++.+.+..+.-  +.   ..++.+.|. ++ .+++....+
T Consensus       100 ~-~i~~g--~~~g~glt~Dg~~l~vs-~gs--~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg-~lyvn~~~~  171 (266)
T 2iwa_A          100 K-NFTHQ--MKDGWGLATDGKILYGS-DGT--SILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NG-EVWANIWQT  171 (266)
T ss_dssp             E-EEECC--SSSCCEEEECSSSEEEE-CSS--SEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TT-EEEEEETTS
T ss_pred             E-EEECC--CCCeEEEEECCCEEEEE-CCC--CeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CC-EEEEecCCC
Confidence            3 34432  11234577798888765 343  2455555555555555431  11   236677887 55 456776667


Q ss_pred             CeEEEEeCCCCceeeecc--Cc-----------ccceEEEEEcCCCCE-EEEEeCCCcEEEEeCCC
Q 007283          168 FLVNFYEGPPFKFKLSHR--GH-----------SNFVNCVRFSPDGSK-FISVSSDKKGIIYDGKT  219 (609)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~--~h-----------~~~v~~l~~s~dg~~-l~s~~~d~~i~iwd~~~  219 (609)
                      ..|.+-|..+++....+.  +-           ....+.++|+|+++. ++++.....+...+...
T Consensus       172 ~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~  237 (266)
T 2iwa_A          172 DCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL  237 (266)
T ss_dssp             SEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence            788888988887655432  11           135689999999874 55555677777776544

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.90  E-value=0.0093  Score=58.92  Aligned_cols=202  Identities=8%  Similarity=-0.065  Sum_probs=114.3

Q ss_pred             CceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceee
Q 007283           17 GRGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLK   93 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~   93 (609)
                      ..+..+.+++.++.|++..  .+.|..+++........+.........+++.+.+..| .+-...+.|.+.+.+.... .
T Consensus       116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~-~  194 (386)
T 3v65_B          116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K  194 (386)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC-E
T ss_pred             CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce-E
Confidence            3567888888777777663  4788888887655433333222345678999865555 4555567888888764331 1


Q ss_pred             EEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           94 KEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        94 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      ..+...-.....+++.|++.+|..+..+. ...+.....+.. ....+ .........++++|++..++.+=...+.|..
T Consensus       195 ~l~~~~l~~P~giavdp~~g~ly~td~~~-~~~I~r~~~dG~-~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~  272 (386)
T 3v65_B          195 VLLWQSLEKPRAIALHPMEGTIYWTDWGN-TPRIEASSMDGS-GRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  272 (386)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEECSS-SCEEEEEETTSC-SCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             EeecCCCCCCcEEEEEcCCCeEEEeccCC-CCEEEEEeCCCC-CcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEE
Confidence            22222234578999999877777654333 122333333322 22222 2333456789999877765666566677888


Q ss_pred             EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283          173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       173 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                      ++...................+++ .++..+++-...+.|..++..+++.
T Consensus       273 ~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~  321 (386)
T 3v65_B          273 ANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGKN  321 (386)
T ss_dssp             ECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCS
T ss_pred             EeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcc
Confidence            875432222122222333455666 3344445544556666666444443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.89  E-value=0.0032  Score=67.29  Aligned_cols=113  Identities=14%  Similarity=0.128  Sum_probs=68.6

Q ss_pred             EEEEeeCCCeEEEEecCCC-----------eEEEEeCCCCceee--ec-cCcccceEEEEEcCCCCEEEEEeC-CCcEEE
Q 007283          150 SCAFKPSRPFRIATCGEDF-----------LVNFYEGPPFKFKL--SH-RGHSNFVNCVRFSPDGSKFISVSS-DKKGII  214 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~-----------~i~~~~~~~~~~~~--~~-~~h~~~v~~l~~s~dg~~l~s~~~-d~~i~i  214 (609)
                      .+++.|.+..+++.||.+.           .+.+||..+.+...  .+ ..+.....++++.++|++++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            5667773334567766432           46788876654432  12 122233345778899999999884 558999


Q ss_pred             EeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe-CC-----CcEEEeeccc
Q 007283          215 YDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS-AD-----KSAKVWDISE  264 (609)
Q Consensus       215 wd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s-~d-----~~i~iwd~~~  264 (609)
                      ||..+.+.. .+... .....-.+++..+++++++.|+ .+     ..+.+||...
T Consensus       270 yd~~t~~W~-~~~~~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t  323 (656)
T 1k3i_A          270 YDSSSDSWI-PGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  323 (656)
T ss_dssp             EEGGGTEEE-ECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ecCcCCcee-ECCCC-CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCC
Confidence            998765432 22111 1112223556678999999888 34     5688999864

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.88  E-value=0.004  Score=56.12  Aligned_cols=186  Identities=9%  Similarity=0.033  Sum_probs=113.6

Q ss_pred             CCcEEEEECCCCCEEEEEeCC--CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC
Q 007283           58 YPATVARFSPNGEWIASADVS--GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG  135 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~d--~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~  135 (609)
                      .....+.|++ +++..|.+.+  ..|+..|..+++++.. ... ..........+++.+|....-..  ..+.+++.++.
T Consensus        21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~-~~l-~~~~fgeGi~~~~~~ly~ltw~~--~~v~v~D~~tl   95 (243)
T 3mbr_X           21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQR-AEV-PPPYFGAGIVAWRDRLIQLTWRN--HEGFVYDLATL   95 (243)
T ss_dssp             CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEE-EEC-CTTCCEEEEEEETTEEEEEESSS--SEEEEEETTTT
T ss_pred             cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEE-EeC-CCCcceeEEEEeCCEEEEEEeeC--CEEEEEECCcC
Confidence            3467899987 6666666665  4899999999886543 322 22332233333456666554222  23455666666


Q ss_pred             CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccC--cc---cceEEEEEcCCCCEEEEEeCCC
Q 007283          136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRG--HS---NFVNCVRFSPDGSKFISVSSDK  210 (609)
Q Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~--h~---~~v~~l~~s~dg~~l~s~~~d~  210 (609)
                      +.+.++.-...   ...+.+++...+++-+ +..+.++|..+++......-  +.   ..++-+.+. +|+.++..-.+.
T Consensus        96 ~~~~ti~~~~~---Gwglt~dg~~L~vSdg-s~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~  170 (243)
T 3mbr_X           96 TPRARFRYPGE---GWALTSDDSHLYMSDG-TAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTS  170 (243)
T ss_dssp             EEEEEEECSSC---CCEEEECSSCEEEECS-SSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred             cEEEEEeCCCC---ceEEeeCCCEEEEECC-CCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCC
Confidence            66777653222   2233466665555544 77899999888776554321  11   345666665 676666555677


Q ss_pred             cEEEEeCCCCccccccCcC-----C-----CCccceEEEEECCCCCeEEEEeC
Q 007283          211 KGIIYDGKTADKIGELSPE-----D-----GHKGSVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~-----~-----~h~~~V~~l~~spd~~~l~s~s~  253 (609)
                      .|.+.|.++++.+..+...     .     .-...-+.|+++|+++.|+..+.
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            9999999999876654311     0     11234689999998876666654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.86  E-value=0.016  Score=56.39  Aligned_cols=201  Identities=8%  Similarity=-0.066  Sum_probs=112.3

Q ss_pred             CceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceee
Q 007283           17 GRGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLK   93 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~   93 (609)
                      .++..+.+++.++.|++..  .+.|..+++............-.....+++.+.+..| .+-...+.|.+.+.+.... .
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-~  151 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR-K  151 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-E
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCce-E
Confidence            3567888888777777663  4788888887655433332222346789999865555 5555677899988765431 1


Q ss_pred             EEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           94 KEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        94 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      ..+...-.....+++.|++.+|..+..+.. ..+.....+. .....+ .........++++|++..++.+-...+.|..
T Consensus       152 ~l~~~~l~~P~~iavdp~~g~ly~td~~~~-~~I~r~~~dG-~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~  229 (349)
T 3v64_C          152 VLLWQSLEKPRAIALHPMEGTIYWTDWGNT-PRIEASSMDG-SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIER  229 (349)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEECSSS-CEEEEEETTS-CSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EEEeCCCCCcceEEEecCcCeEEEeccCCC-CEEEEEeCCC-CCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEE
Confidence            122222345689999997777766543331 2233333332 222222 2223456789999877765666566677888


Q ss_pred             EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 007283          173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD  221 (609)
Q Consensus       173 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~  221 (609)
                      ++...................+++ .++..+++-...+.|..++..+++
T Consensus       230 ~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          230 ANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTCC
T ss_pred             EeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCCC
Confidence            775432221112222333455555 233344443445555555543443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.85  E-value=0.0015  Score=69.95  Aligned_cols=231  Identities=13%  Similarity=0.057  Sum_probs=124.1

Q ss_pred             eEEeecC-CCCeEEEeCC------------CEEEEEeCCCCccccc--c-ccCCCCcEEEEECCCCCEEEEEe-CCCcEE
Q 007283           20 ILISGHP-KSNSILYTNG------------RSVIILDLSNPLQVSI--Y-GEHAYPATVARFSPNGEWIASAD-VSGTVR   82 (609)
Q Consensus        20 ~~~~~~~-~~~~l~~~~~------------~~~~i~~~~~~~~~~~--~-~~h~~~v~~~~~sp~g~~las~~-~d~~i~   82 (609)
                      ..+++.| +|+.++..+.            ..+.+||..+++....  + ..+......+++.++|++++.|+ .+.++.
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            4667777 7776666421            2678999988764332  1 12333344578889999999987 456899


Q ss_pred             EEcCCCCceeeEEEeecc-cc-eeEEEECCCCCEEEEEE-CCCC--cceEEEEEcCCCCeeE------------------
Q 007283           83 IWGAHNDHVLKKEFRVLS-GR-IDDLQWSPDGLRIVACG-DGKG--KSLVRAFMWDSGTNVG------------------  139 (609)
Q Consensus        83 vWd~~~~~~~~~~~~~~~-~~-v~~~~~spdg~~l~~~~-~~~~--~~~~~~~~~~~~~~~~------------------  139 (609)
                      +||..+.+-.  ...... .. -.+++..+||+.++..| .+..  ...+.+++..+++-..                  
T Consensus       269 ~yd~~t~~W~--~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~  346 (656)
T 1k3i_A          269 LYDSSSDSWI--PGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  346 (656)
T ss_dssp             EEEGGGTEEE--ECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             EecCcCCcee--ECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccccccee
Confidence            9998775411  111111 11 23456668898777766 2211  1223333333221100                  


Q ss_pred             -------EEecCCc---------------------------------------cEEEEEEeeCCCeEEEEecCCC-----
Q 007283          140 -------EFDGHSR---------------------------------------RVLSCAFKPSRPFRIATCGEDF-----  168 (609)
Q Consensus       140 -------~~~~h~~---------------------------------------~v~~~~~~p~~~~~i~t~~~d~-----  168 (609)
                             .+-+..+                                       .-.++.|...+..+++.||.+.     
T Consensus       347 ~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~  426 (656)
T 1k3i_A          347 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  426 (656)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC
Confidence                   0000000                                       0112233333445677777432     


Q ss_pred             ------eEEEEeCCCCceeeec---cCcccceEEEEEcCCCCEEEEEeCC-----------CcEEEEeCCCCccccccCc
Q 007283          169 ------LVNFYEGPPFKFKLSH---RGHSNFVNCVRFSPDGSKFISVSSD-----------KKGIIYDGKTADKIGELSP  228 (609)
Q Consensus       169 ------~i~~~~~~~~~~~~~~---~~h~~~v~~l~~s~dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~  228 (609)
                            .+.+||..+.+.....   ....+.-.++...|+|+.++.|+.+           ..+.+||..+.+. ..+..
T Consensus       427 ~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W-~~~~~  505 (656)
T 1k3i_A          427 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTF-YKQNP  505 (656)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEE-EECCC
T ss_pred             cCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCce-eecCC
Confidence                  5667776554443322   1122333455677899999998854           4678999876542 22221


Q ss_pred             CCCCccceEEEEECCCCCeEEEEeC
Q 007283          229 EDGHKGSVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       229 ~~~h~~~V~~l~~spd~~~l~s~s~  253 (609)
                      ............+.||++.++.||.
T Consensus       506 ~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          506 NSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCccccccHhhcCCCcEEEecCCC
Confidence            1111112234556799999999885

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.84  E-value=0.011  Score=59.43  Aligned_cols=239  Identities=9%  Similarity=0.023  Sum_probs=128.3

Q ss_pred             ceeEEeecCC--CCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC---Cc-EEEEcCCCCc
Q 007283           18 RGILISGHPK--SNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS---GT-VRIWGAHNDH   90 (609)
Q Consensus        18 ~~~~~~~~~~--~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d---~~-i~vWd~~~~~   90 (609)
                      +|..++++|+  +..|+... ++.|..+++.++...... +.......++|+|+|+++++-...   .. +...+.....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~-~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~  218 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKT-TNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGF  218 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEEC-CCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEee-cCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCe
Confidence            5778999985  33454443 378899998776665433 333458899999999965554321   22 2222222211


Q ss_pred             eeeEEEeecccceeEEEECC-CCCEEEEEECCCCcceEEEEEcCCCCeeEEE-e-cCCccEEEEEEeeCCCeEEEEecCC
Q 007283           91 VLKKEFRVLSGRIDDLQWSP-DGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-D-GHSRRVLSCAFKPSRPFRIATCGED  167 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~h~~~v~~~~~~p~~~~~i~t~~~d  167 (609)
                      .....+.. -.....++++| +|..+++ ...  ...++.++.+.+.....+ . +....-..++|+|++..++++-...
T Consensus       219 ~~~~~~~~-~~~P~giavd~~~G~lyv~-d~~--~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~  294 (433)
T 4hw6_A          219 TERLSLCN-ARGAKTCAVHPQNGKIYYT-RYH--HAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGK  294 (433)
T ss_dssp             CCEEEEEE-CSSBCCCEECTTTCCEEEC-BTT--CSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTT
T ss_pred             eccccccc-cCCCCEEEEeCCCCeEEEE-ECC--CCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCC
Confidence            11111221 23456789999 6654444 211  122333333333321222 1 1122234699999998656666667


Q ss_pred             CeEEEEeCC--CCcee--eeccC---------------cccceEEEEE---------cCCCCEEEEEeCCCcEEEEeCCC
Q 007283          168 FLVNFYEGP--PFKFK--LSHRG---------------HSNFVNCVRF---------SPDGSKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       168 ~~i~~~~~~--~~~~~--~~~~~---------------h~~~v~~l~~---------s~dg~~l~s~~~d~~i~iwd~~~  219 (609)
                      +.|..++..  .....  ..+.+               ....-..+++         .++|.++++=.....|+.++. +
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~  373 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-E  373 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-T
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-C
Confidence            788876633  22111  11111               1223567888         677776666666778888874 3


Q ss_pred             CccccccCc----CCC----------CccceEEEEEC-CCCCeEEEEeCCCcEEEeec
Q 007283          220 ADKIGELSP----EDG----------HKGSVYAVSWS-PDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       220 ~~~~~~~~~----~~~----------h~~~V~~l~~s-pd~~~l~s~s~d~~i~iwd~  262 (609)
                      +........    ..+          .-..-..|++. ++|.++++-...+.|+.+++
T Consensus       374 G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          374 GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            322111100    001          01224678888 66776666666777777765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=97.83  E-value=0.00082  Score=68.71  Aligned_cols=196  Identities=12%  Similarity=0.095  Sum_probs=119.5

Q ss_pred             EEEECC-----CCCEEEEEe-CCCcEEEEcCCCCceeeEEEeec-ccceeEEEE-C-CCCCEEEEEEC--------C---
Q 007283           62 VARFSP-----NGEWIASAD-VSGTVRIWGAHNDHVLKKEFRVL-SGRIDDLQW-S-PDGLRIVACGD--------G---  121 (609)
Q Consensus        62 ~~~~sp-----~g~~las~~-~d~~i~vWd~~~~~~~~~~~~~~-~~~v~~~~~-s-pdg~~l~~~~~--------~---  121 (609)
                      .+.+|.     ||++|.... .+..|.+-|+.+.++.. .+..- ......+++ + |+++++++.+.        +   
T Consensus        89 h~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~-ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l  167 (595)
T 1fwx_A           89 HVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDA-ILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM  167 (595)
T ss_dssp             CEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEE-EEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred             ccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEee-EEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccc
Confidence            355665     999987555 56679999999876433 22322 245778888 5 99999988862        1   


Q ss_pred             ----CCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC--------------CeE-------------
Q 007283          122 ----KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED--------------FLV-------------  170 (609)
Q Consensus       122 ----~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d--------------~~i-------------  170 (609)
                          .....+.+.+-++.+.+.++.--. .-.-++++|++.+.++++...              ..+             
T Consensus       168 ~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~  246 (595)
T 1fwx_A          168 EDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIA  246 (595)
T ss_dssp             TCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHH
T ss_pred             ccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEecc
Confidence                112245555555555455443111 224577899999877777543              122             


Q ss_pred             ----------EEEeCCC--Cce-eeeccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcc------------cc
Q 007283          171 ----------NFYEGPP--FKF-KLSHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADK------------IG  224 (609)
Q Consensus       171 ----------~~~~~~~--~~~-~~~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~------------~~  224 (609)
                                .+-|...  .+. ..... -.....++.++|||+++++++ .+.++.++|..+.+.            ..
T Consensus       247 ~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~  325 (595)
T 1fwx_A          247 AGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVA  325 (595)
T ss_dssp             HTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred             CCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEE
Confidence                      2333332  111 11110 012345789999999766555 578999999886531            11


Q ss_pred             ccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeeccc
Q 007283          225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE  264 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~  264 (609)
                      .+.    -...-..++|+|+|...++.-.|++|..||+..
T Consensus       326 ~v~----vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          326 EPE----LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CCB----CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             EcC----CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            111    123468899999994445566799999999864

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.82  E-value=0.018  Score=55.40  Aligned_cols=229  Identities=11%  Similarity=0.073  Sum_probs=119.8

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccc---cCCCCcEEEEECCCCCEEEEEeCCCcE-EEEcCCCCceee
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYG---EHAYPATVARFSPNGEWIASADVSGTV-RIWGAHNDHVLK   93 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~---~h~~~v~~~~~sp~g~~las~~~d~~i-~vWd~~~~~~~~   93 (609)
                      ....|.++| +..++......+ +.....++......   .+.+.+..+.+.+++++++.+. ++.| |-+|-  ++.-.
T Consensus        81 ~~~~i~~~~-~~~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~S~Dg--G~tW~  155 (327)
T 2xbg_A           81 RFNSVSFQG-NEGWIVGEPPIM-LHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYRTKDS--GKNWQ  155 (327)
T ss_dssp             EEEEEEEET-TEEEEEEETTEE-EEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEEESST--TSSEE
T ss_pred             cEEEEEecC-CeEEEEECCCeE-EEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeC-CccEEEEcCC--CCCCE
Confidence            344677776 333333322322 23333344332222   2345678888888888888775 4544 33332  22111


Q ss_pred             EEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           94 KEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        94 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                      .........+..+++.|+++.+++...+.   +.  ..++. +..-..+ ......+..+++.|++.. + ..+.++.+.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~g~~G~---~~--~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~-~-~~~~~G~~~  228 (327)
T 2xbg_A          156 ALVQEAIGVMRNLNRSPSGEYVAVSSRGS---FY--STWEPGQTAWEPHNRTTSRRLHNMGFTPDGRL-W-MIVNGGKIA  228 (327)
T ss_dssp             EEECSCCCCEEEEEECTTSCEEEEETTSS---EE--EEECTTCSSCEEEECCSSSCEEEEEECTTSCE-E-EEETTTEEE
T ss_pred             EeecCCCcceEEEEEcCCCcEEEEECCCc---EE--EEeCCCCCceeECCCCCCCccceeEECCCCCE-E-EEeCCceEE
Confidence            11223345688999999987665542221   22  22332 2211111 234567888899888763 3 344566666


Q ss_pred             EEe---CCCCceeeec-cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe
Q 007283          172 FYE---GPPFKFKLSH-RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ  247 (609)
Q Consensus       172 ~~~---~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~  247 (609)
                      ...   ..+++..... ..+...+.++.+.+++..++.+ .++.+. +....++....+.....+...+.++.|.++++ 
T Consensus       229 ~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i~-~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-  305 (327)
T 2xbg_A          229 FSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGALL-CSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-  305 (327)
T ss_dssp             EEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCEE-EESSTTSSCEECGGGTTSSSCCCEEEEEETTE-
T ss_pred             EecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeEE-EeCCCCcccEEcCccCCCCCCeEEEEEECCCc-
Confidence            663   2222211111 1123458899999888766654 466663 33334444433321112345678888876554 


Q ss_pred             EEEEeCCCcEEEee
Q 007283          248 VLTASADKSAKVWD  261 (609)
Q Consensus       248 l~s~s~d~~i~iwd  261 (609)
                      ++.++.+|.|.-++
T Consensus       306 ~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          306 GFILGQKGILLRYV  319 (327)
T ss_dssp             EEEECSTTEEEEEC
T ss_pred             eEEEcCCceEEEEc
Confidence            55666788877665

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.78  E-value=0.036  Score=54.65  Aligned_cols=227  Identities=10%  Similarity=-0.059  Sum_probs=130.2

Q ss_pred             CCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceeeEEEeecccceeEE
Q 007283           28 SNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDL  106 (609)
Q Consensus        28 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~  106 (609)
                      ...|++.+...|...++..........+ -.....++|++.+..|. +-...+.|+.++....... ..+.........+
T Consensus        87 ~~~l~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~~~~~p~gl  164 (386)
T 3v65_B           87 EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVSTGLESPGGL  164 (386)
T ss_dssp             CCEEEEECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEE-EEECSSCSCCCCE
T ss_pred             cceeEeecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcE-EEEeCCCCCccEE
Confidence            4567777777888888876554433333 34578999998665555 4446788999988765421 1222222345778


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-CeEEEEeCCCCceeeecc
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNFYEGPPFKFKLSHR  185 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-~~i~~~~~~~~~~~~~~~  185 (609)
                      ++.+.+..|..+..+..  .+.....+.......+.........++++|.+..++.+-... +.|...+...........
T Consensus       165 avd~~~g~lY~~d~~~~--~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  242 (386)
T 3v65_B          165 AVDWVHDKLYWTDSGTS--RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  242 (386)
T ss_dssp             EEETTTTEEEEEETTTT--EEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred             EEEeCCCeEEEEcCCCC--eEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            99987767666543332  233333332222222333345678899999877656555444 667666644222222222


Q ss_pred             CcccceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          186 GHSNFVNCVRFSPDGSKFISV-SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      ......+.|+|+|++..|..+ +..+.|..++.........+.   ..-..-..+++ ..+.++.+-...+.|..++.
T Consensus       243 ~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~---~~~~~P~giav-~~~~ly~td~~~~~V~~~~~  316 (386)
T 3v65_B          243 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITV-FEDSLYWTDWHTKSINSANK  316 (386)
T ss_dssp             SSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC---SSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred             CCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE---CCCCCceEEEE-ECCEEEEeeCCCCeEEEEEC
Confidence            233456889999876655555 445678888865433221111   11223456677 34455556666777877773

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.78  E-value=0.0031  Score=57.43  Aligned_cols=162  Identities=12%  Similarity=0.112  Sum_probs=106.6

Q ss_pred             eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCcc-EEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee
Q 007283          103 IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRR-VLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK  181 (609)
Q Consensus       103 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~  181 (609)
                      ...+.|+ |+..+++.|+. +.+.++..+.++++.+..+.-.... -..+++  ++..+....-.++.+.++|..+++..
T Consensus        45 tqGL~~~-~~~LyestG~~-g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~  120 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLN-GRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQV  120 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEET-TEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEE
T ss_pred             cceEEEE-CCEEEEECCCC-CCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEE
Confidence            4788998 77666666643 3446778888888877776543322 233444  45555666667889999999998877


Q ss_pred             eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCC-CCc-cceEEEEECCCCCeEEEEeCCCcEEE
Q 007283          182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED-GHK-GSVYAVSWSPDGKQVLTASADKSAKV  259 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~h~-~~V~~l~~spd~~~l~s~s~d~~i~i  259 (609)
                      .++.-..   ....+++|++.|+.+..+..+.++|..+.+.+.++.... +.. ..++.+.|. +|+..+....+..|.+
T Consensus       121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~v  196 (262)
T 3nol_A          121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVR  196 (262)
T ss_dssp             EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEE
T ss_pred             EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEE
Confidence            6654221   112345678777766667789999999988777664321 111 335567776 7777766667888999


Q ss_pred             eecccCCCCceEEEec
Q 007283          260 WDISEDNHGKLKKTLT  275 (609)
Q Consensus       260 wd~~~~~~~~~~~~~~  275 (609)
                      .|..   .++....+.
T Consensus       197 IDp~---tG~V~~~Id  209 (262)
T 3nol_A          197 IDPE---TGKVTGIID  209 (262)
T ss_dssp             ECTT---TCBEEEEEE
T ss_pred             EECC---CCcEEEEEE
Confidence            9876   455655554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.77  E-value=0.058  Score=56.80  Aligned_cols=208  Identities=8%  Similarity=-0.087  Sum_probs=119.1

Q ss_pred             CCccCcCceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCC
Q 007283           11 VPSTERGRGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAH   87 (609)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~   87 (609)
                      +|.+.-+.+..|.++++++.|++..  .+.|..+++........+..-......+|+.+.++.|. +-...+.|.+-+.+
T Consensus        31 ~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~d  110 (628)
T 4a0p_A           31 IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLD  110 (628)
T ss_dssp             CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecC
Confidence            3433345788999999888887763  47888888865544333332224577899998766554 44456788888876


Q ss_pred             CCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC
Q 007283           88 NDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED  167 (609)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d  167 (609)
                      .... ...+...-.....+++.|...+|..+.-+.. ..+.....+ +.....+...-.....+++++++..+..+=...
T Consensus       111 G~~~-~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~-~~I~r~~~d-G~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~  187 (628)
T 4a0p_A          111 GQHR-QVLVWKDLDSPRALALDPAEGFMYWTEWGGK-PKIDRAAMD-GSERTTLVPNVGRANGLTIDYAKRRLYWTDLDT  187 (628)
T ss_dssp             STTC-EEEECSSCCCEEEEEEETTTTEEEEEECSSS-CEEEEEETT-SCSCEEEECSCSSEEEEEEETTTTEEEEEETTT
T ss_pred             CCcE-EEEEeCCCCCcccEEEccCCCeEEEeCCCCC-CEEEEEeCC-CCceEEEECCCCCcceEEEccccCEEEEEECCC
Confidence            5431 1112222345689999996555555432211 122222223 222333333445678899999877655555666


Q ss_pred             CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007283          168 FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI  223 (609)
Q Consensus       168 ~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~  223 (609)
                      +.|...+....... .+.........+++.. +..+++-...+.|...|..+++..
T Consensus       188 ~~I~~~d~dG~~~~-v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~~~  241 (628)
T 4a0p_A          188 NLIESSNMLGLNRE-VIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQNR  241 (628)
T ss_dssp             TEEEEEETTSCSCE-EEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCSC
T ss_pred             CEEEEEcCCCCceE-EeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCCce
Confidence            77777775432221 2222233345666654 344455445677877776666543

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.75  E-value=0.0092  Score=63.71  Aligned_cols=189  Identities=13%  Similarity=0.108  Sum_probs=105.1

Q ss_pred             EEeCCCEEEEEeCCCCccccccccCCCC----------c-EEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecc
Q 007283           32 LYTNGRSVIILDLSNPLQVSIYGEHAYP----------A-TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLS  100 (609)
Q Consensus        32 ~~~~~~~~~i~~~~~~~~~~~~~~h~~~----------v-~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~  100 (609)
                      +....+.++.+|..+++++-.+......          + ..+++  .+..|+.++.|+.|..+|..+++.+- .+....
T Consensus        71 v~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W-~~~~~~  147 (668)
T 1kv9_A           71 TSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIW-SQQTTD  147 (668)
T ss_dssp             EEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEE-EEECSC
T ss_pred             EECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEee-eeccCC
Confidence            3334567888888888875444322110          1 11222  34567777889999999999987543 232211


Q ss_pred             -cceeEEEECC---CCCEEEEEECCC--CcceEEEEEcCCCCeeEEEecC---Cc-------------------------
Q 007283          101 -GRIDDLQWSP---DGLRIVACGDGK--GKSLVRAFMWDSGTNVGEFDGH---SR-------------------------  146 (609)
Q Consensus       101 -~~v~~~~~sp---dg~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h---~~-------------------------  146 (609)
                       .....+.-+|   ++..++..+...  ....+..++-++++.+..+...   ..                         
T Consensus       148 ~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~  227 (668)
T 1kv9_A          148 PAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGG  227 (668)
T ss_dssp             TTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCE
T ss_pred             CCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCC
Confidence             0011111122   443333222110  1234666677777777766421   00                         


Q ss_pred             ---cEEEEEEeeCCCeEEEEecCCC-------------------eEEEEeCCCCceeeecc--Ccc-------cceEEEE
Q 007283          147 ---RVLSCAFKPSRPFRIATCGEDF-------------------LVNFYEGPPFKFKLSHR--GHS-------NFVNCVR  195 (609)
Q Consensus       147 ---~v~~~~~~p~~~~~i~t~~~d~-------------------~i~~~~~~~~~~~~~~~--~h~-------~~v~~l~  195 (609)
                         .....+++|.+.. +..+..++                   .+.-+|..+++..-.+.  .|.       .+.....
T Consensus       228 gg~~w~~~a~d~~~~~-vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d  306 (668)
T 1kv9_A          228 GGTVWDSMAYDPELDL-LYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAE  306 (668)
T ss_dssp             ECCCCSCEEEETTTTE-EEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEE
T ss_pred             CCccccceEEcCCCCE-EEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEE
Confidence               0113678887765 44554443                   37788888887665443  232       2222223


Q ss_pred             EcCCCC---EEEEEeCCCcEEEEeCCCCcccc
Q 007283          196 FSPDGS---KFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       196 ~s~dg~---~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      +..+|+   .++.++.+|.++++|..+++.+.
T Consensus       307 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  338 (668)
T 1kv9_A          307 LNIDGKPRKVLMQAPKNGFFYVLDRTNGKLIS  338 (668)
T ss_dssp             EEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             eccCCcEEEEEEEECCCCEEEEEECCCCCEec
Confidence            334665   58888999999999999998763

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.75  E-value=0.012  Score=59.03  Aligned_cols=152  Identities=10%  Similarity=0.099  Sum_probs=83.8

Q ss_pred             ceeEEeecCC-CCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC-CCc---EEEEcCCCCce
Q 007283           18 RGILISGHPK-SNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV-SGT---VRIWGAHNDHV   91 (609)
Q Consensus        18 ~~~~~~~~~~-~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~-d~~---i~vWd~~~~~~   91 (609)
                      +|..++++|+ +..|+.. .+..|..+|+.++.... +.........++|+|+|++|..++. ++.   ..+|....+..
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            5668888983 4444433 33788889987765543 3333445789999999996655443 221   23332222222


Q ss_pred             e-eEEEeecccceeEEEECC-CCCEEEEEECCCCcceEEEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCCC
Q 007283           92 L-KKEFRVLSGRIDDLQWSP-DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDF  168 (609)
Q Consensus        92 ~-~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~  168 (609)
                      . ...+.. ......++++| +|..+++ ..+..  .+..++.+......... +....-..++|+|++..++++-...+
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~-d~~~~--~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~  292 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFN-SWNAG--QVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQH  292 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEE-ETTTT--EEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTT
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEE-ECCCC--EEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCC
Confidence            1 122222 23467889999 5654444 32222  23333433332211111 11234578999999986566666677


Q ss_pred             eEEEEe
Q 007283          169 LVNFYE  174 (609)
Q Consensus       169 ~i~~~~  174 (609)
                      .|..++
T Consensus       293 ~I~~~~  298 (430)
T 3tc9_A          293 YILRSD  298 (430)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777765

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.73  E-value=0.11  Score=58.78  Aligned_cols=526  Identities=13%  Similarity=0.102  Sum_probs=249.7

Q ss_pred             cCCCCeEEEeCCCEEEEEeCCCCccccc--cccCCCCcEEEE-ECCCC---CEEEEEeCCCcEEE--EcCCCCce-ee-E
Q 007283           25 HPKSNSILYTNGRSVIILDLSNPLQVSI--YGEHAYPATVAR-FSPNG---EWIASADVSGTVRI--WGAHNDHV-LK-K   94 (609)
Q Consensus        25 ~~~~~~l~~~~~~~~~i~~~~~~~~~~~--~~~h~~~v~~~~-~sp~g---~~las~~~d~~i~v--Wd~~~~~~-~~-~   94 (609)
                      +|+.+.|+...++.+-||..........  +.- -+.|.+++ |.|.|   .+|+-++.++.+-+  ||....+. +. .
T Consensus        43 ~~~~~~Lvvak~~~Lel~~~~~~~L~~v~~~~l-~G~I~~l~~~r~~g~~~D~L~v~td~~~~~il~~d~~~~~~~~~t~  121 (1158)
T 3ei3_A           43 SAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGM-YGKIAVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITR  121 (1158)
T ss_dssp             CSSCCEEEEEETTEEEEEEEETTEEEEEEEEEC-SSCEEEEEEECCTTCSSCEEEEEETTCEEEEEEEEC-CCCCEEEEE
T ss_pred             CCCccEEEEecCCEEEEEEEcccceEEEEEEEc-ccEEEEEEEEcCCCCCceEEEEEeCCceEEEEEEcCCCCceeEEEE
Confidence            4667778888889999999865443221  111 24677765 66654   68888888887766  55443221 11 1


Q ss_pred             EEeeccc-------ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-Ce--eEEEecCCccEEEEEEee--CCCeEEE
Q 007283           95 EFRVLSG-------RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-TN--VGEFDGHSRRVLSCAFKP--SRPFRIA  162 (609)
Q Consensus        95 ~~~~~~~-------~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~h~~~v~~~~~~p--~~~~~i~  162 (609)
                      .+.....       +-.-++..|.|+.++...-.+   ...++.++.. ..  ...+.-....|.+++|-.  .++ .||
T Consensus       122 ~~~~~~~~~~r~~~~g~~l~vDP~gR~~~l~~~e~---~~~v~pl~~~~~~l~~~~~~l~~~~v~d~~fL~g~~~P-~~A  197 (1158)
T 3ei3_A          122 AHGNVQDRIGRPSETGIIGIIDPECRMIGLRLYDG---LFKVIPLDRDNKELKAFNIRLEELHVIDVKFLYGCQAP-TIC  197 (1158)
T ss_dssp             EEEECCCSSCCBCTTCCEEEECTTSSEEEEECBTT---EEEEEECCTTCTTCCCEEEECSCCCEEEEEECSSCSSC-EEE
T ss_pred             eccccccCccccCCCCCEEEEcCCCCEEEEEeccC---EEEEEEecCCcccccccccccccceEEEEEEecCCCCc-EEE
Confidence            1111111       123678889887666543222   3345555431 11  112222234577777732  223 344


Q ss_pred             EecCC---CeEEEEeCCCCc-eeee--cc--CcccceEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCccccccCcCCCC
Q 007283          163 TCGED---FLVNFYEGPPFK-FKLS--HR--GHSNFVNCVRFSP--DGSKFISVSSDKKGIIYDGKTADKIGELSPEDGH  232 (609)
Q Consensus       163 t~~~d---~~i~~~~~~~~~-~~~~--~~--~h~~~v~~l~~s~--dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h  232 (609)
                      .=..|   ..+.+|...... ....  ..  .-....+.+-=-|  -|..|+. +.+. |...|......+. . +.. .
T Consensus       198 ~Ly~d~~~~~l~~y~ldl~~~~~~~~~w~~~~l~~~a~~LipVP~~~gGvlv~-g~n~-i~y~~~~~~~~~~-~-p~~-~  272 (1158)
T 3ei3_A          198 FVYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIII-GQES-ITYHNGDKYLAIA-P-PII-K  272 (1158)
T ss_dssp             EEEEETTEEEEEEEEEETTTTEEEECSSCCEEECTTCCEEEECCTTTCCEEEE-CSSC-EEEEETTEEEEEC-C-GGG-G
T ss_pred             EEEECCCCCEEEEEEEEcCCCeeeecccccccCCCCCCEEEECCCCCceEEEE-ECCE-EEEEcCCCceEEe-c-ccc-C
Confidence            32222   234445322211 1111  00  0000111111112  2444443 3333 3333422211111 1 111 1


Q ss_pred             ccceEEEEE-CCCCCeEEEEeCCCcEEEeecccCCC--C-ceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEE
Q 007283          233 KGSVYAVSW-SPDGKQVLTASADKSAKVWDISEDNH--G-KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIF  308 (609)
Q Consensus       233 ~~~V~~l~~-spd~~~l~s~s~d~~i~iwd~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~  308 (609)
                      ...+.+-+. ..++..++-+..+|.+..-.+..+..  + .....+....-+.......-+...++++++++..|.-.+|
T Consensus       273 ~~~i~~~~~~~~~~~~~LL~~~~G~l~~l~l~~d~~~~~~~~V~~l~i~~~~~~~~~ssl~~l~~g~lFvgS~~Gds~l~  352 (1158)
T 3ei3_A          273 QSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDLRVELLGETSIAECLTYLDNGVVFVGSRLGDSQLV  352 (1158)
T ss_dssp             GSCEEEEEECSTTSSEEEEEETTCEEEEEEEEEEC-----CEEEEEEEEEEEECSCCSEEEECSTTEEEEECSSSCEEEE
T ss_pred             CceEEEEEEEecCCCEEEEEeCCCCEEEEEEEEcCCccCceeEEEEEEEEcCCccCccEEEEECCCEEEEEEecCCcEEE
Confidence            123333333 33456667777899887665432111  1 0111111100000000011123356789999999988888


Q ss_pred             eCCCCCC---C---ceeeeCCCCCeEEEEEecC----CCCEEEEEe--cCCcEEEEecCccccceeccc--cccceeEee
Q 007283          309 SANDLEK---S---PLQLSGHMKNVTALTVLNI----DPKVILSSS--YDGLIVKWIQGIGYGGKLQRK--ENSQIKCFA  374 (609)
Q Consensus       309 ~~~~~~~---~---~~~~~~h~~~v~~~~~~~~----~~~~~~t~s--~dg~i~~W~~~~~~~~~~~~~--~~~~~~~~~  374 (609)
                      .+.....   .   ....-..-.+|..++..+.    .++++++++  .+|.+++...+.+........  ....+..+.
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~gv~~iWtl~  432 (1158)
T 3ei3_A          353 KLNVDSNEQGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLR  432 (1158)
T ss_dssp             EECSSCCTTSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCEEEEEEESBCEEEEEEECCCSCCEEEEEC
T ss_pred             EEecCCCCccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCeEEEEecCCCEEEEEeecCCCccEEEEEe
Confidence            7654321   1   1122234457777776642    234444433  578888875543322111111  111222222


Q ss_pred             ee----CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCe--eeEEec--c
Q 007283          375 AI----EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAE--VVSTIN--L  446 (609)
Q Consensus       375 ~~----~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~--~  446 (609)
                      ..    ....+..++.+.-.++.+.+..........+......+....-..+.++.-+..+++++....  ......  .
T Consensus       433 ~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev~~~gf~~~~~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~  512 (1158)
T 3ei3_A          433 SDPNRETDDTLVLSFVGQTRVLMLNGEEVEETELMGFVDDQQTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQ  512 (1158)
T ss_dssp             CCSSCSSCCEEEEEETTEEEEEEEETTEEEEECCTTCCSSSCEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTT
T ss_pred             ecCCCCCCCEEEEECCCCeEEEEEeCCcccccccccccCCCCcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCC
Confidence            11    112333334444444544332211111111222223333332234566777778888776432  333333  2


Q ss_pred             CCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC------CCEEEEEeC-CCeEEEEE
Q 007283          447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD------VSMFASGDV-NREAIVWD  519 (609)
Q Consensus       447 ~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~------~~~l~s~s~-d~~v~iwd  519 (609)
                      +..+...+.+.  ..++.++ .+.|.++++..+.+..... ..-...|.|+++.|.      +.++|.|.+ |++++|++
T Consensus       513 ~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~s  588 (1158)
T 3ei3_A          513 AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILK  588 (1158)
T ss_dssp             CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEE
Confidence            34566666553  4566665 6789899987665543222 234568999999864      479999997 99999999


Q ss_pred             ccCCceEEeeecCCCCceEEEEEC--CCCcEEEEEeCCCeEEEEEcC
Q 007283          520 RVSREVKLKNMLYHTARINCLAWS--PNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       520 ~~~~~~~~~~~~~h~~~i~~l~~s--~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      +..-+........-.....++.+.  ....+|..|-.||.+.-+.++
T Consensus       589 L~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d  635 (1158)
T 3ei3_A          589 LPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLN  635 (1158)
T ss_dssp             TTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEEC
T ss_pred             CCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEc
Confidence            875443222211111222333222  234678899999998877765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.72  E-value=0.037  Score=52.87  Aligned_cols=228  Identities=13%  Similarity=-0.010  Sum_probs=127.1

Q ss_pred             eEEEeCCCEEEEEeCCCCc-cccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceeeEEEeecccceeEEE
Q 007283           30 SILYTNGRSVIILDLSNPL-QVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQ  107 (609)
Q Consensus        30 ~l~~~~~~~~~i~~~~~~~-~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~  107 (609)
                      .|++.+...|...++.... ....+-..-.....++|++.+..|. +-...+.|+.++..........+...-.....++
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gla   85 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLA   85 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEE
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEE
Confidence            5777778888899987653 1111111123567889998655554 5446788999988765321112222234567899


Q ss_pred             ECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe-cCCCeEEEEeCCCCceeeeccC
Q 007283          108 WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC-GEDFLVNFYEGPPFKFKLSHRG  186 (609)
Q Consensus       108 ~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~-~~d~~i~~~~~~~~~~~~~~~~  186 (609)
                      +.+.+..|..+....  ..+.+...+.......+.........++++|.+..++.+- +....|...+..-.........
T Consensus        86 vd~~~g~ly~~d~~~--~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A           86 CDWLGEKLYWTDSET--NRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEcCCCeEEEEECCC--CEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            998766666554332  2344445443322222234445678899999766545554 3346666665432111111122


Q ss_pred             cccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          187 HSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       187 h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ....-+.|+++|++..|..+. ..+.|..++...... ..+..  +.-..-..+++.. +.++.+-...+.|..++..
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~--~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~  237 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAVVK--GSLPHPFALTLFE-DILYWTDWSTHSILACNKY  237 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEC--SCCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEEec--CCCCCceEEEEeC-CEEEEEecCCCeEEEEECC
Confidence            234467899999777665554 467788888754322 22211  1122345566643 3445555566778888764

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.68  E-value=0.006  Score=59.43  Aligned_cols=227  Identities=13%  Similarity=0.063  Sum_probs=115.1

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCcccc-----ccccCCCCcEEEEECCC----CCEEEEEeCC-----CcEEE
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQVS-----IYGEHAYPATVARFSPN----GEWIASADVS-----GTVRI   83 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~-----~~~~h~~~v~~~~~sp~----g~~las~~~d-----~~i~v   83 (609)
                      .|..+.+.|+|..++.-..+.|.+++  ++....     .+..-......++|+|+    |.+.++-...     ..|..
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            57789999999977776667888887  333211     11111345788999998    4444443322     55666


Q ss_pred             EcCCCCc-----eeeEEEee---cccceeEEEECCCCCEEEEEECCCCc--------ceEEEEEcCCCC-----------
Q 007283           84 WGAHNDH-----VLKKEFRV---LSGRIDDLQWSPDGLRIVACGDGKGK--------SLVRAFMWDSGT-----------  136 (609)
Q Consensus        84 Wd~~~~~-----~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~~~~--------~~~~~~~~~~~~-----------  136 (609)
                      ++...+.     .+...+..   .......++|.|||..+++.|+....        ...+++..+...           
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~  189 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGR  189 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTC
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCC
Confidence            7665432     11111221   11234689999999888877754221        011232222211           


Q ss_pred             ---eeEEE-ecCCccEEEEEEee-CCCeEEEEecCCC-------eEEEEeCCC--------C--------ceeeeccCcc
Q 007283          137 ---NVGEF-DGHSRRVLSCAFKP-SRPFRIATCGEDF-------LVNFYEGPP--------F--------KFKLSHRGHS  188 (609)
Q Consensus       137 ---~~~~~-~~h~~~v~~~~~~p-~~~~~i~t~~~d~-------~i~~~~~~~--------~--------~~~~~~~~h~  188 (609)
                         ....+ .++ .....++|+| ++...++-.+.+.       .+..-....        +        .....+ .+.
T Consensus       190 ~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-~~~  267 (352)
T 2ism_A          190 RGARPEVYSLGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-PQG  267 (352)
T ss_dssp             TTSCTTEEEECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-TTC
T ss_pred             CCCCccEEEEcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-CCC
Confidence               11111 122 2356788999 5654444444443       233322100        0        001112 122


Q ss_pred             cceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc------ccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK------IGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       189 ~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~------~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      .....++| .+|.++++.-..+.|...+......      ...+.   .-...+..+++.|||.++++..
T Consensus       268 ~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~---~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          268 FPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL---SGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             CCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE---ESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec---ccCCCeeEEEECCCCcEEEEEe
Confidence            23456777 4666655555556666665443321      11110   1124688899999997666653

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.68  E-value=0.046  Score=53.05  Aligned_cols=227  Identities=9%  Similarity=-0.066  Sum_probs=130.1

Q ss_pred             CCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceeeEEEeecccceeEE
Q 007283           28 SNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASA-DVSGTVRIWGAHNDHVLKKEFRVLSGRIDDL  106 (609)
Q Consensus        28 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~-~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~  106 (609)
                      ...|++.+...|...++..........+ -.....++|+|.+..|.-+ ...+.|+.++....... ............+
T Consensus        44 ~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~-~~~~~~~~~p~gl  121 (349)
T 3v64_C           44 EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVE-EVVSTGLESPGGL  121 (349)
T ss_dssp             CCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE-EEECSSCSCCCEE
T ss_pred             CceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCce-EEEeCCCCCccEE
Confidence            3467777777788888866544333333 2357899999866666544 46788988988765421 1122222346789


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCC-CeEEEEeCCCCceeeecc
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED-FLVNFYEGPPFKFKLSHR  185 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-~~i~~~~~~~~~~~~~~~  185 (609)
                      ++.+.+..|..+..+..  .+.....+.......+.........++++|.+..++.+-... +.|...+...........
T Consensus       122 avd~~~g~ly~~d~~~~--~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~  199 (349)
T 3v64_C          122 AVDWVHDKLYWTDSGTS--RIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIAD  199 (349)
T ss_dssp             EEETTTTEEEEEETTTT--EEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCC
T ss_pred             EEecCCCeEEEEcCCCC--eEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEE
Confidence            99987767666543322  344445443322222333445678899999777656655444 667666644222211122


Q ss_pred             CcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          186 GHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      ......+.++|+|++..|..+. ..+.|..++.........+.   ..-..-..+++ ..+.++.+-...+.|..++.
T Consensus       200 ~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~---~~~~~P~giav-~~~~ly~td~~~~~V~~~~~  273 (349)
T 3v64_C          200 THLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS---QGLPHPFAITV-FEDSLYWTDWHTKSINSANK  273 (349)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC---SSCSSEEEEEE-ETTEEEEEETTTTEEEEEET
T ss_pred             CCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe---CCCCCceEEEE-ECCEEEEecCCCCeEEEEEc
Confidence            2334568899998776655554 45678888865433221111   11223456666 34455555556677777763

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.65  E-value=0.039  Score=57.51  Aligned_cols=238  Identities=11%  Similarity=0.024  Sum_probs=131.3

Q ss_pred             CCeEEEeCCCEEEEEeCCCCccccccc--cCC--CCcE-EEEECCCCCEEEEEeC-----CCcEEEEcCCCCceeeEEEe
Q 007283           28 SNSILYTNGRSVIILDLSNPLQVSIYG--EHA--YPAT-VARFSPNGEWIASADV-----SGTVRIWGAHNDHVLKKEFR   97 (609)
Q Consensus        28 ~~~l~~~~~~~~~i~~~~~~~~~~~~~--~h~--~~v~-~~~~sp~g~~las~~~-----d~~i~vWd~~~~~~~~~~~~   97 (609)
                      +..++...+..++.+|..+++++-.+.  .+.  ..+. ...+. +|.+++....     ++.|..+|..+++.+- .+.
T Consensus       116 ~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W-~~~  193 (571)
T 2ad6_A          116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAELGVRGAVNAFDLKTGELKW-RAF  193 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGGTCCCEEEEEETTTCCEEE-EEE
T ss_pred             CEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CCEEEEEecCCccCCCCEEEEEECCCCcEEE-EEc
Confidence            333333345788889998887654332  211  0121 11111 5655554432     7899999999887543 222


Q ss_pred             ecccc--------------------------------------eeEEEECCCCCEEEE-EECCC---------Cc---ce
Q 007283           98 VLSGR--------------------------------------IDDLQWSPDGLRIVA-CGDGK---------GK---SL  126 (609)
Q Consensus        98 ~~~~~--------------------------------------v~~~~~spdg~~l~~-~~~~~---------~~---~~  126 (609)
                      .....                                      -..+++.|+...+.. .++..         +.   ..
T Consensus       194 ~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~  273 (571)
T 2ad6_A          194 ATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEE
Confidence            21100                                      023566665444443 32210         00   12


Q ss_pred             EEEEEcCCCCeeEEEec--C--------CccEEEEEEeeCCC--eEEEEecCCCeEEEEeCCCCceeeecc-Cc------
Q 007283          127 VRAFMWDSGTNVGEFDG--H--------SRRVLSCAFKPSRP--FRIATCGEDFLVNFYEGPPFKFKLSHR-GH------  187 (609)
Q Consensus       127 ~~~~~~~~~~~~~~~~~--h--------~~~v~~~~~~p~~~--~~i~t~~~d~~i~~~~~~~~~~~~~~~-~h------  187 (609)
                      +..++-++++.+..+..  |        ..++. ....+++.  ..++.++.++.+...|..+++...... +.      
T Consensus       274 v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            45566677777766642  2        12222 23334564  346778889999999987776543321 11      


Q ss_pred             ------ccce--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 007283          188 ------SNFV--------------------------NCVRFSPDGSKFISVS----------------------------  207 (609)
Q Consensus       188 ------~~~v--------------------------~~l~~s~dg~~l~s~~----------------------------  207 (609)
                            ..++                          ..++|+|+..++....                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                  0111                          2457888877665543                            


Q ss_pred             ---------CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEec
Q 007283          208 ---------SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       208 ---------~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                               .++.+..||..+++.+.+...    ...+.+..+...+.+++.++.|+.++.+|..   .++.+-.+.
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~---tG~~lw~~~  502 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTGKAKWTKWE----KFAAWGGTLYTKGGLVWYATLDGYLKALDNK---DGKELWNFK  502 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTCCEEEEEEE----SSCCCSBCEEETTTEEEEECTTSEEEEEETT---TCCEEEEEE
T ss_pred             cCccccCCCCCCeEEEEECCCCCEEEEecC----CCCccceeEEECCCEEEEEcCCCeEEEEECC---CCCEEEEEe
Confidence                     346888999988887665531    1122222223345677778999999999986   466665554

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.63  E-value=0.037  Score=50.51  Aligned_cols=200  Identities=8%  Similarity=0.070  Sum_probs=115.4

Q ss_pred             cCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceeeEEEee-cccceeEEEECCCCCEEEEEECCCCcceEEEEEc
Q 007283           55 EHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLKKEFRV-LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW  132 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~  132 (609)
                      |=.++++.++++|++..|. ..+.++.|..-|.. ++++.+ +.. -......+++.+++.++++ .++..  .+.++..
T Consensus        24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~-i~l~g~~D~EGIa~~~~g~~~vs-~E~~~--~l~~~~v   98 (255)
T 3qqz_A           24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRT-IPLDFVKDLETIEYIGDNQFVIS-DERDY--AIYVISL   98 (255)
T ss_dssp             TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEE-EECSSCSSEEEEEECSTTEEEEE-ETTTT--EEEEEEE
T ss_pred             CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEE-EecCCCCChHHeEEeCCCEEEEE-ECCCC--cEEEEEc
Confidence            4345799999999876555 46667777777776 554433 321 1246788899999865454 33332  2334444


Q ss_pred             CCCCe---eEEEe------cCCccEEEEEEeeCCCeEEEEecCCC-eEEEEeCCCC--ceeee----c--cCcccceEEE
Q 007283          133 DSGTN---VGEFD------GHSRRVLSCAFKPSRPFRIATCGEDF-LVNFYEGPPF--KFKLS----H--RGHSNFVNCV  194 (609)
Q Consensus       133 ~~~~~---~~~~~------~h~~~v~~~~~~p~~~~~i~t~~~d~-~i~~~~~~~~--~~~~~----~--~~h~~~v~~l  194 (609)
                      +....   +....      ........++++|.+..++++...+. .+.-|+....  .....    +  ..+...+..+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            43321   12221      12345689999999876566665554 5555552111  11111    0  1234467899


Q ss_pred             EEcCCCC-EEEEEeCCCcEEEEeCCCCccccccCcCCCCc------cceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          195 RFSPDGS-KFISVSSDKKGIIYDGKTADKIGELSPEDGHK------GSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       195 ~~s~dg~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~------~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      +|+|... +++.......+.++|.. ++.+..+....+..      ..-..|+|.|+|++.++ +..+.++.+.
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f~  250 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRFT  250 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEEE
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEEE
Confidence            9999855 44555556677888855 44444333222221      24578999999985555 6666555553

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.62  E-value=0.025  Score=53.75  Aligned_cols=196  Identities=8%  Similarity=-0.015  Sum_probs=108.6

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCee
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV  138 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  138 (609)
                      ....++++|+|+++++-..++.|..||.... .. ..+ ...+....++++|||+.+++........ +..++...++..
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~-~~~-~~~~~p~gia~~~dG~l~vad~~~~~~~-v~~~d~~~g~~~  108 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQ-IHA-TVEGKVSGLAFTSNGDLVATGWNADSIP-VVSLVKSDGTVE  108 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCC-EE-EEE-ECSSEEEEEEECTTSCEEEEEECTTSCE-EEEEECTTSCEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCCc-eE-EEE-eCCCCceeEEEcCCCcEEEEeccCCcce-EEEEcCCCCeEE
Confidence            4678999999998777767899999987653 22 112 2345688999999998666543222111 222233344322


Q ss_pred             EEEe-cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee----------eccCcccceEEEEEcCCCCEEEEE-
Q 007283          139 GEFD-GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL----------SHRGHSNFVNCVRFSPDGSKFISV-  206 (609)
Q Consensus       139 ~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~----------~~~~h~~~v~~l~~s~dg~~l~s~-  206 (609)
                      .... ........++..+++ ..+++-..++.+..+|....+...          ...+.....+.+  +||++.|..+ 
T Consensus       109 ~~~~~~~~~~~~g~~~~~~~-~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d  185 (306)
T 2p4o_A          109 TLLTLPDAIFLNGITPLSDT-QYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSN  185 (306)
T ss_dssp             EEEECTTCSCEEEEEESSSS-EEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEE
T ss_pred             EEEeCCCccccCcccccCCC-cEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEe
Confidence            1111 112223344444433 345555556777777765432111          001112234455  8888755444 


Q ss_pred             eCCCcEEEEeCCC-CccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          207 SSDKKGIIYDGKT-ADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       207 ~~d~~i~iwd~~~-~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ...+.|..++... ++. ...... .....-..+++.++|+++++....+.|..++..
T Consensus       186 ~~~~~I~~~~~~~~g~~-~~~~~~-~~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          186 TEKMLLLRIPVDSTDKP-GEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             TTTTEEEEEEBCTTSCB-CCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred             CCCCEEEEEEeCCCCCC-CccEEE-eccCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence            4567899998764 221 100000 000123468888999877777667888888753

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.62  E-value=0.051  Score=51.88  Aligned_cols=201  Identities=9%  Similarity=-0.035  Sum_probs=113.5

Q ss_pred             CceeEEeecCCCCeEEEeC--CCEEEEEeCCC----CccccccccCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCC
Q 007283           17 GRGILISGHPKSNSILYTN--GRSVIILDLSN----PLQVSIYGEHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHND   89 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~----~~~~~~~~~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~   89 (609)
                      .+|..+.++++++.|++..  .+.|..+++.+    ......+...-.....+++.+.+..| ++-...+.|.+.+.+..
T Consensus        30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~  109 (316)
T 1ijq_A           30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  109 (316)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence            4677899999887787764  47888888865    22222232222346789999755544 55556789999988654


Q ss_pred             ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCC
Q 007283           90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDF  168 (609)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~  168 (609)
                      . ........-.....+++.|++.+|..+..+.. ..+.....+ +.....+ ...-.....++++|++..++.+-...+
T Consensus       110 ~-~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~-~~I~~~~~d-G~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~  186 (316)
T 1ijq_A          110 K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (316)
T ss_dssp             S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSS-CEEEEEETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             c-eEEEEECCCCCcceEEeCCCCCEEEEEccCCC-CeEEEEcCC-CCCeEEEEECCCCCceEEEEeccCCEEEEEECCCC
Confidence            3 22222222346789999997777766543321 122222333 3333333 223345778999998776566666667


Q ss_pred             eEEEEeCCCCce--eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 007283          169 LVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD  221 (609)
Q Consensus       169 ~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~  221 (609)
                      .|..++......  .....+.......+++. ++..+++-...+.|..++..+++
T Consensus       187 ~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~  240 (316)
T 1ijq_A          187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGS  240 (316)
T ss_dssp             EEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCC
T ss_pred             eEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCc
Confidence            888887643211  11111122334556663 34444554455667666655544

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.61  E-value=0.0085  Score=63.96  Aligned_cols=237  Identities=11%  Similarity=0.070  Sum_probs=133.1

Q ss_pred             EEEeCCCEEEEEeCCCCccccccccC-CCCcEEEEECC---CCCEEEEEe-----CCCcEEEEcCCCCceeeEEEeecc-
Q 007283           31 ILYTNGRSVIILDLSNPLQVSIYGEH-AYPATVARFSP---NGEWIASAD-----VSGTVRIWGAHNDHVLKKEFRVLS-  100 (609)
Q Consensus        31 l~~~~~~~~~i~~~~~~~~~~~~~~h-~~~v~~~~~sp---~g~~las~~-----~d~~i~vWd~~~~~~~~~~~~~~~-  100 (609)
                      ++...++.++.+|..+++++-.+... ......+..+|   +|.+++..+     .++.|..+|..+++.+- .+.... 
T Consensus       121 ~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W-~~~~~~~  199 (668)
T 1kv9_A          121 YVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAW-RFYTVPG  199 (668)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEE-EEESSCC
T ss_pred             EEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEE-EecccCC
Confidence            33344678888999888875443321 10001111122   555554332     25899999999987543 332110 


Q ss_pred             c------------------------------ceeEEEECCCCCEEEEEECCCC----------------cceEEEEEcCC
Q 007283          101 G------------------------------RIDDLQWSPDGLRIVACGDGKG----------------KSLVRAFMWDS  134 (609)
Q Consensus       101 ~------------------------------~v~~~~~spdg~~l~~~~~~~~----------------~~~~~~~~~~~  134 (609)
                      .                              ....+++.|++..+.....+..                ...+..++.++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~t  279 (668)
T 1kv9_A          200 DPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDT  279 (668)
T ss_dssp             CTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTT
T ss_pred             CCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCC
Confidence            0                              0124688887665554322110                01245556667


Q ss_pred             CCeeEEEec--CC-------ccEEEEEEeeCCC--eEEEEecCCCeEEEEeCCCCceeeeccCcc------------cc-
Q 007283          135 GTNVGEFDG--HS-------RRVLSCAFKPSRP--FRIATCGEDFLVNFYEGPPFKFKLSHRGHS------------NF-  190 (609)
Q Consensus       135 ~~~~~~~~~--h~-------~~v~~~~~~p~~~--~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~------------~~-  190 (609)
                      ++.+..+..  |.       .+.....+..++.  ..++.++.++.+.++|..+++......-..            .+ 
T Consensus       280 G~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~  359 (668)
T 1kv9_A          280 GKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPV  359 (668)
T ss_dssp             CCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEE
T ss_pred             CceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCcc
Confidence            777776653  22       2333333444554  248888999999999988877652211000            00 


Q ss_pred             -----------------------eEEEEEcCCCCEEEEEe------------------------------------CCCc
Q 007283          191 -----------------------VNCVRFSPDGSKFISVS------------------------------------SDKK  211 (609)
Q Consensus       191 -----------------------v~~l~~s~dg~~l~s~~------------------------------------~d~~  211 (609)
                                             -..++|+|+...+....                                    .++.
T Consensus       360 ~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~  439 (668)
T 1kv9_A          360 EAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGA  439 (668)
T ss_dssp             ECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEE
T ss_pred             ccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccce
Confidence                                   01267788766544311                                    2377


Q ss_pred             EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEec
Q 007283          212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                      +..||..+++.+.....    ...+....+...+.+++.++.|+.++.||..   .++.+..+.
T Consensus       440 l~A~D~~tG~~~W~~~~----~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~---tG~~l~~~~  496 (668)
T 1kv9_A          440 LLAWDPVKQKAAWKVPY----PTHWNGGTLSTAGNLVFQGTAAGQMHAYSAD---KGEALWQFE  496 (668)
T ss_dssp             EEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEEETT---TCCEEEEEE
T ss_pred             EEEEeCCCCcEEEEccC----CCCCcCceeEeCCCEEEEECCcccchhhhhh---cChhheEec
Confidence            88999999987665532    1122333444567788899999999999986   455555543

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.57  E-value=0.024  Score=55.07  Aligned_cols=229  Identities=12%  Similarity=0.033  Sum_probs=118.6

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCc-cccc---cccCCCCcEEEEECCC----CCEEEEEeC---C----CcEE
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPL-QVSI---YGEHAYPATVARFSPN----GEWIASADV---S----GTVR   82 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~-~~~~---~~~h~~~v~~~~~sp~----g~~las~~~---d----~~i~   82 (609)
                      .|..+.+.|+|..++.-..+.|.+++. ++. .+..   +..-......++|+|+    |.+.++-..   +    ..|.
T Consensus        30 ~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~  108 (354)
T 3a9g_A           30 VPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVI  108 (354)
T ss_dssp             CEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEE
Confidence            567889999998777766678888873 333 1111   1111245788999997    555454332   3    4566


Q ss_pred             EEcCCCC--c-----eeeEEEee-cccceeEEEECCCCCEEEEEECCCCc--------ceEEEEEcCC-CC--------e
Q 007283           83 IWGAHND--H-----VLKKEFRV-LSGRIDDLQWSPDGLRIVACGDGKGK--------SLVRAFMWDS-GT--------N  137 (609)
Q Consensus        83 vWd~~~~--~-----~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~~--------~~~~~~~~~~-~~--------~  137 (609)
                      .|+....  .     .+...+.. .......++|.|||..+++.|+....        ...+++..+. ++        .
T Consensus       109 r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~  188 (354)
T 3a9g_A          109 RGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPN  188 (354)
T ss_dssp             EEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTT
T ss_pred             EEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCC
Confidence            6665543  1     11111221 11234679999999988887753211        0012222222 11        0


Q ss_pred             eEEE-ecCCccEEEEEEee-CCCeEEEEecCCC--eEEEEeCCCCc------------------eeeeccCcccceEEEE
Q 007283          138 VGEF-DGHSRRVLSCAFKP-SRPFRIATCGEDF--LVNFYEGPPFK------------------FKLSHRGHSNFVNCVR  195 (609)
Q Consensus       138 ~~~~-~~h~~~v~~~~~~p-~~~~~i~t~~~d~--~i~~~~~~~~~------------------~~~~~~~h~~~v~~l~  195 (609)
                      ...+ .++. ....++|+| ++...++-.+.+.  .+.+-.  .+.                  ....+.........+.
T Consensus       189 ~~i~a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~  265 (354)
T 3a9g_A          189 SPIWSYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGAS  265 (354)
T ss_dssp             CCEEEECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEE
T ss_pred             CcEEEEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceE
Confidence            1111 2332 245789999 5654333334332  222221  111                  1111211123467788


Q ss_pred             Ec-------CCCCEEEEEeCCCcEEEEeCCCCccc---cccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          196 FS-------PDGSKFISVSSDKKGIIYDGKTADKI---GELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       196 ~s-------~dg~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      |.       .+|.++++.-..+.|...+......+   ..+  ..+-...+..+++.|||.+.++..
T Consensus       266 ~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~--~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          266 FVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTF--FKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             ECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEE--CTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             EECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeee--ccCCCCCeeEEEECCCCcEEEEEe
Confidence            83       46766665555667777766543211   111  112235688999999998766653

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.50  E-value=0.078  Score=55.39  Aligned_cols=188  Identities=11%  Similarity=0.058  Sum_probs=101.7

Q ss_pred             CCEEEEEeC-CCCccccccccCCCC-----------cEEEEECCCCCE----EEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283           36 GRSVIILDL-SNPLQVSIYGEHAYP-----------ATVARFSPNGEW----IASADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        36 ~~~~~i~~~-~~~~~~~~~~~h~~~-----------v~~~~~sp~g~~----las~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      .+.++-+|. .+++++-.+......           ...++++|.+..    |..++.|+.+.-.|..+++.+-. ....
T Consensus        72 ~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~-~~~~  150 (599)
T 1w6s_A           72 PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWK-VENS  150 (599)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEE-EECC
T ss_pred             CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEe-ecCC
Confidence            456788888 777765433321110           123466554444    77778899999999988875432 2211


Q ss_pred             c--c--cee-EEEECCCCCEEEEEECC--CCcceEEEEEcCCCCeeEEEecCCcc-------------------------
Q 007283          100 S--G--RID-DLQWSPDGLRIVACGDG--KGKSLVRAFMWDSGTNVGEFDGHSRR-------------------------  147 (609)
Q Consensus       100 ~--~--~v~-~~~~spdg~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~-------------------------  147 (609)
                      .  .  .+. ..... ++..++..+.+  .....++.++-.+++.+..+......                         
T Consensus       151 ~~~~~~~~~ssP~v~-~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~t  229 (599)
T 1w6s_A          151 DIKVGSTLTIAPYVV-KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGT  229 (599)
T ss_dssp             CGGGTCBCCSCCEEE-TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHT
T ss_pred             CCCccceeecCCEEE-CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccccccccccc
Confidence            1  0  111 11111 45333322100  01234666777777777665432211                         


Q ss_pred             ------------EE-EEEEeeCCCeEEEEecC---------------CCeEEEEeCCCCceeeecc--Ccc--------c
Q 007283          148 ------------VL-SCAFKPSRPFRIATCGE---------------DFLVNFYEGPPFKFKLSHR--GHS--------N  189 (609)
Q Consensus       148 ------------v~-~~~~~p~~~~~i~t~~~---------------d~~i~~~~~~~~~~~~~~~--~h~--------~  189 (609)
                                  +. ..++.|....+++..+.               ...+.-+|..+++..-.+.  .|.        .
T Consensus       230 w~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~  309 (599)
T 1w6s_A          230 WEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNV  309 (599)
T ss_dssp             SSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCC
T ss_pred             CCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCc
Confidence                        11 34566666654443332               1367778888877654432  231        1


Q ss_pred             ceEEEEEc-CCC---CEEEEEeCCCcEEEEeCCCCcccccc
Q 007283          190 FVNCVRFS-PDG---SKFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       190 ~v~~l~~s-~dg---~~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      ++. +... .+|   ..++.++.+|.+.+.|.++++.+...
T Consensus       310 p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  349 (599)
T 1w6s_A          310 MML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (599)
T ss_dssp             CEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             cEE-EeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecc
Confidence            221 2222 567   45777889999999999999876543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.46  E-value=0.11  Score=51.53  Aligned_cols=205  Identities=8%  Similarity=-0.066  Sum_probs=113.9

Q ss_pred             cCceeEEeecCCCCeEEEeC--CCEEEEEeCCCC----ccccccccCCCCcEEEEECCCC-CEEEEEeCCCcEEEEcCCC
Q 007283           16 RGRGILISGHPKSNSILYTN--GRSVIILDLSNP----LQVSIYGEHAYPATVARFSPNG-EWIASADVSGTVRIWGAHN   88 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~----~~~~~~~~h~~~v~~~~~sp~g-~~las~~~d~~i~vWd~~~   88 (609)
                      -+.+..+++++.++.|++..  .+.|..+++...    .........-.....+++.+.+ ++..+-...+.|.+.+.+.
T Consensus       111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g  190 (400)
T 3p5b_L          111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  190 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred             cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence            34677899998877777763  467888887652    2222233233457889999854 4445555678899888875


Q ss_pred             CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCC
Q 007283           89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF  168 (609)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~  168 (609)
                      ... ...+...-.....+++.|.+.+|..+..+.. ..+.....+...........-.....++++|++..++.+=...+
T Consensus       191 ~~~-~~l~~~~~~~P~~iavdp~~g~ly~td~~~~-~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~  268 (400)
T 3p5b_L          191 VKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  268 (400)
T ss_dssp             CSE-EEEEECSSCCEEEEEEETTTTEEEEEECSSS-CCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             Cce-EEEEeCCCCCcceEEEecccCeEEEEeCCCC-CEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCC
Confidence            432 2222223345789999997767666543321 12333333332222222333356788999988776555555667


Q ss_pred             eEEEEeCCCCce--eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007283          169 LVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI  223 (609)
Q Consensus       169 ~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~  223 (609)
                      .|...+......  .....+.......+++. .+..+++-...+.|..++..+++.+
T Consensus       269 ~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~~G~~~  324 (400)
T 3p5b_L          269 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDV  324 (400)
T ss_dssp             EEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESSSCCCC
T ss_pred             EEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcCCCCce
Confidence            787777543222  11111222333455552 2334455555566666665555443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.42  E-value=0.077  Score=51.51  Aligned_cols=104  Identities=14%  Similarity=0.167  Sum_probs=59.6

Q ss_pred             ceeEEeecCCCC-eEEEeCCCEEEEEeCCCCcc--cc----ccccCCCCcEEEEECCC----CCEEEEEeC---C----C
Q 007283           18 RGILISGHPKSN-SILYTNGRSVIILDLSNPLQ--VS----IYGEHAYPATVARFSPN----GEWIASADV---S----G   79 (609)
Q Consensus        18 ~~~~~~~~~~~~-~l~~~~~~~~~i~~~~~~~~--~~----~~~~h~~~v~~~~~sp~----g~~las~~~---d----~   79 (609)
                      .|..+.+.|+|. .++.-..+.|.+++......  +.    .+....+....++|+|+    |.+.++-..   +    .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            577999999999 77776667888887532211  11    11112345688999995    554444222   1    2


Q ss_pred             cEEEEcCCCC--ce--eeEEEeecc------cceeEEEECCCCCEEEEEECC
Q 007283           80 TVRIWGAHND--HV--LKKEFRVLS------GRIDDLQWSPDGLRIVACGDG  121 (609)
Q Consensus        80 ~i~vWd~~~~--~~--~~~~~~~~~------~~v~~~~~spdg~~l~~~~~~  121 (609)
                      .|..++....  ..  ....+....      ..-..++|.|||..+++.|+.
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~  150 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGEN  150 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCT
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCC
Confidence            3444554322  11  111122211      224679999999888888764

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.35  E-value=0.23  Score=53.70  Aligned_cols=229  Identities=10%  Similarity=-0.051  Sum_probs=127.1

Q ss_pred             CeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCce---eeEEEeeccccee
Q 007283           29 NSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHV---LKKEFRVLSGRID  104 (609)
Q Consensus        29 ~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~---~~~~~~~~~~~v~  104 (609)
                      ..|++.+...|+..++..........+ ...+..++|++.+..|. +-...+.|+.+++.....   ....+........
T Consensus       396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          396 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             CEEEEECBSSEEEECTTSCCCEEEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             cccccccccceeEeeccCCcceeeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            456777777888888866554333333 45678999998655554 544567888888764211   1112222334567


Q ss_pred             EEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe-cCCCeEEEEeCCCCceeee
Q 007283          105 DLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC-GEDFLVNFYEGPPFKFKLS  183 (609)
Q Consensus       105 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~-~~d~~i~~~~~~~~~~~~~  183 (609)
                      .|++.+.+..|..+..+.  ..|.+...+.......+.........|+++|.+..++.+- +....|...+..-......
T Consensus       475 GLAvD~~~~~LY~tD~~~--~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~l  552 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  552 (791)
T ss_dssp             EEEEETTTTEEEEEETTT--TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEE
T ss_pred             eeeeeecCCcEEEEecCC--CeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEE
Confidence            899999887777665333  2455555553332222334445678999999866555543 3335676666543222222


Q ss_pred             ccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          184 HRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       184 ~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      ........+.|++.+.+..|..+. ....|...+.........+. ..+.-..-.+|++.. ++++++-...+.|...+.
T Consensus       553 v~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~-~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          553 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-CTTTTSSEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEec-CCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeC
Confidence            333345678899998776666554 45678788765433221111 101111234555532 234444445566666664

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.35  E-value=0.14  Score=50.61  Aligned_cols=229  Identities=10%  Similarity=-0.026  Sum_probs=129.2

Q ss_pred             CeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCCCc---eeeEEEeeccccee
Q 007283           29 NSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHNDH---VLKKEFRVLSGRID  104 (609)
Q Consensus        29 ~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~~~---~~~~~~~~~~~~v~  104 (609)
                      ..|++.+...|...++.......... .-..+..++|++.+..|.-++ ..+.|+.++.....   ..............
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            46777788899999987665433332 345688999998766665444 56788888876421   11112222334577


Q ss_pred             EEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe-cCCCeEEEEeCCCCceeee
Q 007283          105 DLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC-GEDFLVNFYEGPPFKFKLS  183 (609)
Q Consensus       105 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~-~~d~~i~~~~~~~~~~~~~  183 (609)
                      .+++.+.+..|..+.....  .+.+...+.......+.........++++|.+..++.+- +....|...+..-......
T Consensus       163 glavD~~~~~lY~~d~~~~--~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~  240 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLG--TVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  240 (400)
T ss_dssp             EEEEETTTTEEEEEETTTT--EEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEE
T ss_pred             cEEEEecCCceEEEECCCC--eEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEE
Confidence            8999986666666543322  344444443332223333445578899999766555554 3335666665442222222


Q ss_pred             ccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          184 HRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       184 ~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      ........+.|++++++..|..+. ....|..+|...... ..+....+.-..-.++++. .+.++.+-...+.|..++.
T Consensus       241 ~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~  318 (400)
T 3p5b_L          241 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR  318 (400)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEES
T ss_pred             EECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEc
Confidence            223335578899998877666654 456788888654332 2221111111223456662 3345555566677877774

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.35  E-value=0.12  Score=53.73  Aligned_cols=187  Identities=12%  Similarity=0.054  Sum_probs=98.2

Q ss_pred             CCEEEEEeC-CCCccccccccCCC-Cc----------EEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeeccc-c
Q 007283           36 GRSVIILDL-SNPLQVSIYGEHAY-PA----------TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSG-R  102 (609)
Q Consensus        36 ~~~~~i~~~-~~~~~~~~~~~h~~-~v----------~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~-~  102 (609)
                      .+.++-+|. .+++++-.+..... .+          ..+++  .+..|..++.|+.+..+|..+++.+-. +..... .
T Consensus        72 ~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~-~~~~~~~~  148 (571)
T 2ad6_A           72 PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINWE-VEVCDPKV  148 (571)
T ss_dssp             TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEE-EECCCGGG
T ss_pred             CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEEE-ecCCCCCc
Confidence            456888888 77776543321111 00          11222  345666777899999999988875432 221110 0


Q ss_pred             eeEEEECC---CCCEEEEEECCC--CcceEEEEEcCCCCeeEEEecCCcc------------------------------
Q 007283          103 IDDLQWSP---DGLRIVACGDGK--GKSLVRAFMWDSGTNVGEFDGHSRR------------------------------  147 (609)
Q Consensus       103 v~~~~~sp---dg~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~------------------------------  147 (609)
                      -..+.-+|   ++..++....+.  ....+..++-++++.+..+......                              
T Consensus       149 ~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~  228 (571)
T 2ad6_A          149 GSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDA  228 (571)
T ss_dssp             TCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTG
T ss_pred             cceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccc
Confidence            00111122   443333322100  0224566676777777665432111                              


Q ss_pred             -------E-EEEEEeeCCCeEEEEecC-----------C----CeEEEEeCCCCceeeecc--Ccc--------cceEEE
Q 007283          148 -------V-LSCAFKPSRPFRIATCGE-----------D----FLVNFYEGPPFKFKLSHR--GHS--------NFVNCV  194 (609)
Q Consensus       148 -------v-~~~~~~p~~~~~i~t~~~-----------d----~~i~~~~~~~~~~~~~~~--~h~--------~~v~~l  194 (609)
                             + ..+++.|....+++..+.           |    ..+..+|..+++..-.+.  .|.        .++. +
T Consensus       229 ~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~  307 (571)
T 2ad6_A          229 WKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-T  307 (571)
T ss_dssp             GGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-E
T ss_pred             eecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-E
Confidence                   0 135666765554443321           2    257778888877654432  221        2221 2


Q ss_pred             EEcCCCC---EEEEEeCCCcEEEEeCCCCcccccc
Q 007283          195 RFSPDGS---KFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       195 ~~s~dg~---~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      ...++|+   .++.++.+|.+.++|..+++.+...
T Consensus       308 ~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~  342 (571)
T 2ad6_A          308 DQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAE  342 (571)
T ss_dssp             EEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeee
Confidence            2234774   5677888999999999998876543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.33  E-value=0.12  Score=49.27  Aligned_cols=202  Identities=6%  Similarity=-0.084  Sum_probs=113.1

Q ss_pred             CceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccc-cccccCCCCcEEEEECCCCC-EEEEEeCCCcEEEEcCCCCcee
Q 007283           17 GRGILISGHPKSNSILYTN--GRSVIILDLSNPLQV-SIYGEHAYPATVARFSPNGE-WIASADVSGTVRIWGAHNDHVL   92 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~-~~~~~h~~~v~~~~~sp~g~-~las~~~d~~i~vWd~~~~~~~   92 (609)
                      +.++.+.++++++.|++..  .+.|..+++...... ..+...-.....+++.+.+. +..+-...+.|.+.+.+.... 
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~-  113 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLR-  113 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcE-
Confidence            4567888998877777763  478888888665321 22222223467899998554 445555678899998865331 


Q ss_pred             eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEE
Q 007283           93 KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVN  171 (609)
Q Consensus        93 ~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~  171 (609)
                      .............+++.|.+.+|..+..+... .+.....+. .....+ ...-..-..++++|++..++.+=...+.|.
T Consensus       114 ~~l~~~~~~~P~giavdp~~g~ly~td~~~~~-~I~r~~~dG-~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~  191 (318)
T 3sov_A          114 KVLFWQELDQPRAIALDPSSGFMYWTDWGEVP-KIERAGMDG-SSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIH  191 (318)
T ss_dssp             EEEECSSCSSEEEEEEEGGGTEEEEEECSSSC-EEEEEETTS-CSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred             EEEEeCCCCCccEEEEeCCCCEEEEEecCCCC-EEEEEEcCC-CCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEE
Confidence            11222233456889999976666655423211 222233332 222222 222345678999997776555556667788


Q ss_pred             EEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283          172 FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       172 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                      .++...........+.......+++.. +..+.+-...+.|..++..+++.
T Consensus       192 ~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G~~  241 (318)
T 3sov_A          192 KSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTGEG  241 (318)
T ss_dssp             EEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCCS
T ss_pred             EEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCCCc
Confidence            877543222111222233345556643 23444444556677776655543

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.32  E-value=0.22  Score=52.02  Aligned_cols=77  Identities=13%  Similarity=0.071  Sum_probs=43.7

Q ss_pred             CCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CC
Q 007283          511 VNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DE  589 (609)
Q Consensus       511 ~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~  589 (609)
                      .++.+.-||+.+++...+....  .+...-...-.+.+++.++.|+.++.||..+++ .+.....+......-+.|. ++
T Consensus       451 ~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~-~lW~~~l~~g~~~~P~~y~~~G  527 (599)
T 1w6s_A          451 GLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD-LLWKFKIPSGAIGYPMTYTHKG  527 (599)
T ss_dssp             CCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCC-EEEEEECSSCCCSCCEEEEETT
T ss_pred             CcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEECCCCC-EEEEeeCCCCcEeccEEEEeCC
Confidence            3478888888877665432211  111111112256677789999999999998754 4444433322222335554 55


Q ss_pred             C
Q 007283          590 H  590 (609)
Q Consensus       590 ~  590 (609)
                      +
T Consensus       528 ~  528 (599)
T 1w6s_A          528 T  528 (599)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=97.31  E-value=0.013  Score=53.37  Aligned_cols=159  Identities=10%  Similarity=-0.014  Sum_probs=101.9

Q ss_pred             eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee
Q 007283          103 IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL  182 (609)
Q Consensus       103 v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~  182 (609)
                      ...+.|+. +..+++.|+..   .++.++.++++.+..+-.....-..+++  ++..++...-.++.+.++|..+++...
T Consensus        57 tqGL~~~~-~~Ly~stG~~g---~v~~iD~~Tgkv~~~~l~~~~FgeGit~--~g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQG---TLRQLSLESAQPVWMERLGNIFAEGLAS--DGERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTT---EEEECCSSCSSCSEEEECTTCCEEEEEE--CSSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             cceEEEEC-CEEEEEcCCCC---EEEEEECCCCcEEeEECCCCcceeEEEE--eCCEEEEEEccCCEEEEEECCcCcEEE
Confidence            47888873 44444544322   2677777788776665211112233554  444556666778899999999988876


Q ss_pred             eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCc---cceEEEEECCCCCeEEEEeCCCcEEE
Q 007283          183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK---GSVYAVSWSPDGKQVLTASADKSAKV  259 (609)
Q Consensus       183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~---~~V~~l~~spd~~~l~s~s~d~~i~i  259 (609)
                      ++.--...   ..+++|++.|+.+..++.+.++|..+.+.+.++... .+.   ..++.+.|. +|+..+....+..|.+
T Consensus       131 ti~~~~eG---wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~-~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~v  205 (268)
T 3nok_A          131 TTRYSGEG---WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVK-LRGQPVELINELECA-NGVIYANIWHSSDVLE  205 (268)
T ss_dssp             EEECSSCC---CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECE-ETTEECCCEEEEEEE-TTEEEEEETTCSEEEE
T ss_pred             EEeCCCce---eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeC-CCCcccccccccEEe-CCEEEEEECCCCeEEE
Confidence            65422211   234467888877777889999999998877766432 122   245677776 7776766667788999


Q ss_pred             eecccCCCCceEEEec
Q 007283          260 WDISEDNHGKLKKTLT  275 (609)
Q Consensus       260 wd~~~~~~~~~~~~~~  275 (609)
                      .|..   .++....+.
T Consensus       206 IDp~---TG~V~~~Id  218 (268)
T 3nok_A          206 IDPA---TGTVVGVID  218 (268)
T ss_dssp             ECTT---TCBEEEEEE
T ss_pred             EeCC---CCcEEEEEE
Confidence            9876   455555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.29  E-value=0.13  Score=49.16  Aligned_cols=270  Identities=12%  Similarity=0.075  Sum_probs=138.6

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccc----cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceee
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYG----EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK   93 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~----~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~   93 (609)
                      ....|.+.+++..++......+ +.....++......    .....+..++|+| ++.++.+ .++.|  +...++...-
T Consensus        37 ~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~~g-~~g~i--~~S~DgG~tW  111 (327)
T 2xbg_A           37 TILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWIVG-EPPIM--LHTTDGGQSW  111 (327)
T ss_dssp             CEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEEEE-ETTEE--EEESSTTSSC
T ss_pred             cEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEEEE-CCCeE--EEECCCCCCc
Confidence            4557777766666664443433 33443343322221    1234688999987 5555554 45544  3333221111


Q ss_pred             EEEe---ecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCee-EEEecCCccEEEEEEeeCCCeEEEEecCCCe
Q 007283           94 KEFR---VLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV-GEFDGHSRRVLSCAFKPSRPFRIATCGEDFL  169 (609)
Q Consensus        94 ~~~~---~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~  169 (609)
                      ....   .+.+.+..+.+.+++..++ +++...  +  +...|.+..- ....++...+..+++.|++.. ++.+.....
T Consensus       112 ~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~g~--v--~~S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~-~~~g~~G~~  185 (327)
T 2xbg_A          112 SQIPLDPKLPGSPRLIKALGNGSAEM-ITNVGA--I--YRTKDSGKNWQALVQEAIGVMRNLNRSPSGEY-VAVSSRGSF  185 (327)
T ss_dssp             EECCCCTTCSSCEEEEEEEETTEEEE-EETTCC--E--EEESSTTSSEEEEECSCCCCEEEEEECTTSCE-EEEETTSSE
T ss_pred             eECccccCCCCCeEEEEEECCCCEEE-EeCCcc--E--EEEcCCCCCCEEeecCCCcceEEEEEcCCCcE-EEEECCCcE
Confidence            1111   1234567788877775544 443221  2  2344544332 222345567889999998764 555555555


Q ss_pred             EEEEe--CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC-CCCccceEEEEECCCCC
Q 007283          170 VNFYE--GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE-DGHKGSVYAVSWSPDGK  246 (609)
Q Consensus       170 i~~~~--~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~h~~~V~~l~~spd~~  246 (609)
                      ++-.|  ..+++..  ..+....+..+.+++++..+ .++.+|.+++.+...++....+... ..+...+.++.+.|++.
T Consensus       186 ~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~  262 (327)
T 2xbg_A          186 YSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNE  262 (327)
T ss_dssp             EEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSC
T ss_pred             EEEeCCCCCceeEC--CCCCCCccceeEECCCCCEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCE
Confidence            55555  3444433  22345678899999998755 4566787777642223333322110 01223588999999887


Q ss_pred             eEEEEeCCCcEEEeecccCCCCceEEEec-cC-CCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          247 QVLTASADKSAKVWDISEDNHGKLKKTLT-PS-GSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       247 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      .++.+. ++.+. +..+.   ++.=..+. .. ....+..  +.+ .++..+++++.+|.+..++
T Consensus       263 ~~~~g~-~g~i~-~S~Dg---G~tW~~~~~~~~~~~~~~~--v~~-~~~~~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          263 VWLAGG-AGALL-CSQDG---GQTWQQDVDVKKVPSNFYK--ILF-FSPDQGFILGQKGILLRYV  319 (327)
T ss_dssp             EEEEES-TTCEE-EESST---TSSCEECGGGTTSSSCCCE--EEE-EETTEEEEECSTTEEEEEC
T ss_pred             EEEEeC-CCeEE-EeCCC---CcccEEcCccCCCCCCeEE--EEE-ECCCceEEEcCCceEEEEc
Confidence            766654 67663 33221   21111111 00 0111111  111 2456677778888766554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.24  E-value=0.11  Score=46.84  Aligned_cols=162  Identities=14%  Similarity=0.101  Sum_probs=105.9

Q ss_pred             ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCc-cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce
Q 007283          102 RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSR-RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF  180 (609)
Q Consensus       102 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~  180 (609)
                      -...+.|++ +..+.+.|. .+.+.++..+.++++.+..+.-... .-..+++.  +..++...-.++.+.++|..+++.
T Consensus        22 ftqGL~~~~-~~LyestG~-~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~   97 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGE-TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTP   97 (243)
T ss_dssp             CEEEEEEET-TEEEEEECC-TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred             ccccEEEEC-CEEEEECCC-CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcE
Confidence            467899987 555555554 3345678889998888776653322 22334443  445566667788999999999887


Q ss_pred             eeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCc---cceEEEEECCCCCeEEEEeCCCcE
Q 007283          181 KLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK---GSVYAVSWSPDGKQVLTASADKSA  257 (609)
Q Consensus       181 ~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~---~~V~~l~~spd~~~l~s~s~d~~i  257 (609)
                      ..++.-....   ..+++|+..|..+..++.+.++|..+.+.+.++.... +.   ..++.+.+. +|+..+....+..|
T Consensus        98 ~~ti~~~~~G---wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~~~lNeLe~~-~G~lyanvw~s~~I  172 (243)
T 3mbr_X           98 RARFRYPGEG---WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPLDNLNELEWV-NGELLANVWLTSRI  172 (243)
T ss_dssp             EEEEECSSCC---CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTTTEE
T ss_pred             EEEEeCCCCc---eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCcccccceeeEEe-CCEEEEEECCCCeE
Confidence            7665432222   2344677777777678899999999988777664321 11   245666665 67766666667788


Q ss_pred             EEeecccCCCCceEEEec
Q 007283          258 KVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       258 ~iwd~~~~~~~~~~~~~~  275 (609)
                      .+.|..   .++....+.
T Consensus       173 ~vIDp~---tG~V~~~id  187 (243)
T 3mbr_X          173 ARIDPA---SGKVVAWID  187 (243)
T ss_dssp             EEECTT---TCBEEEEEE
T ss_pred             EEEECC---CCCEEEEEE
Confidence            888876   455555543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.18  E-value=0.23  Score=49.62  Aligned_cols=199  Identities=11%  Similarity=0.008  Sum_probs=108.3

Q ss_pred             cEEEEECCC---CCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC
Q 007283           60 ATVARFSPN---GEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT  136 (609)
Q Consensus        60 v~~~~~sp~---g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  136 (609)
                      -..++++|+   |++.++- ..+.|+.+|..+++..  .+.........++|+|+|..+++-..+.......++.-..+.
T Consensus       141 P~gvavd~~s~~g~Lyv~D-~~~~I~~id~~~g~v~--~~~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVG-QRDAFRHVDFVNQYVD--IKTTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCEEEECTTTTTCEEEEEC-BTSCEEEEETTTTEEE--EECCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred             CceEEEccccCCCEEEEEe-CCCCEEEEECCCCEEE--EeecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCC
Confidence            568899995   6655543 3388999998766532  222233458899999999944432211111111111111111


Q ss_pred             ee--EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee-c-cCcccceEEEEEcCCCCEEE-EEeCCCc
Q 007283          137 NV--GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS-H-RGHSNFVNCVRFSPDGSKFI-SVSSDKK  211 (609)
Q Consensus       137 ~~--~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~-~-~~h~~~v~~l~~s~dg~~l~-s~~~d~~  211 (609)
                      ..  ..+. .......++++|++..++++-..++.|..++...+..... + .+....-..++|+|+|+.|. +-.....
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            10  1111 1233456788884334455555667788888765544111 1 11222234699999999544 4445678


Q ss_pred             EEEEeCC--CCccc--cccC---cCCCC---------ccceEEEEE---------CCCCCeEEEEeCCCcEEEeec
Q 007283          212 GIIYDGK--TADKI--GELS---PEDGH---------KGSVYAVSW---------SPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       212 i~iwd~~--~~~~~--~~~~---~~~~h---------~~~V~~l~~---------spd~~~l~s~s~d~~i~iwd~  262 (609)
                      |..++..  ++...  ..+.   ...+.         -..-..+++         .++|.++++-...+.|+.++.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~  372 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP  372 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence            8887644  22210  0000   00011         112457888         777888878777888999875

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.17  E-value=0.19  Score=52.47  Aligned_cols=60  Identities=18%  Similarity=0.121  Sum_probs=38.5

Q ss_pred             CCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEec
Q 007283          209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       209 d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                      ++.+..||..+++.+.+....    ..+..-.+...+.+++.++.|+.++.||.+   .++.+-.+.
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~g~~dg~l~A~D~~---tG~~lW~~~  524 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEH----LPLWAGVLATAGNLVFTGTGDGYFKAFDAK---SGKELWKFQ  524 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEES----SCCCSCCEEETTTEEEEECTTSEEEEEETT---TCCEEEEEE
T ss_pred             cceEEEEECCCCCEEEEecCC----CCCcccceEeCCCEEEEECCCCcEEEEECC---CCCEEEEec
Confidence            577888999998876554311    111111112246678889999999999986   466665554

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.10  E-value=0.28  Score=49.38  Aligned_cols=241  Identities=10%  Similarity=0.019  Sum_probs=128.9

Q ss_pred             ceeEEeecCC-CCeEEEe--CCCEEEEEeCCCCccccccccC---CCCcEEEEE-------CCCCCEEEEEeCCC-c---
Q 007283           18 RGILISGHPK-SNSILYT--NGRSVIILDLSNPLQVSIYGEH---AYPATVARF-------SPNGEWIASADVSG-T---   80 (609)
Q Consensus        18 ~~~~~~~~~~-~~~l~~~--~~~~~~i~~~~~~~~~~~~~~h---~~~v~~~~~-------sp~g~~las~~~d~-~---   80 (609)
                      .|.-++++|+ +..|+.+  ..+.+.+.|+.++........-   -.....++|       +++|++|..++..+ .   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            5678899983 4434333  3468888998887665433321   124788999       99999665554433 2   


Q ss_pred             ---EEEEcCCC-Ccee----eEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC-------CCCe--------
Q 007283           81 ---VRIWGAHN-DHVL----KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD-------SGTN--------  137 (609)
Q Consensus        81 ---i~vWd~~~-~~~~----~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~-------~~~~--------  137 (609)
                         |.+.+... +...    ...+.... ....++++|++.+|..+.-..+  .+..++.+       .+..        
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g--~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKG--QVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTT--EEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             CceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCC--EEEEEecccccccccCceeeccccccc
Confidence               44554333 1211    01222222 3457889997666666554332  24444544       2221        


Q ss_pred             ---eEE-E-ecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eCCCCce-----eeec---cCc---------ccceE-
Q 007283          138 ---VGE-F-DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKF-----KLSH---RGH---------SNFVN-  192 (609)
Q Consensus       138 ---~~~-~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~~~~~~-----~~~~---~~h---------~~~v~-  192 (609)
                         ... + .+....-..++|+|++..++++=...+.|+.+  +......     ....   .|.         ...-. 
T Consensus       297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~  376 (496)
T 3kya_A          297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQ  376 (496)
T ss_dssp             TTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEE
T ss_pred             ccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeE
Confidence               111 1 12233457899999998545555666777764  4433221     1111   111         11223 


Q ss_pred             EEEEc-------CCCCEEEEEeCCCcEEEEeCCCCccccccCcC-----------CCC----------ccceEEEEECCC
Q 007283          193 CVRFS-------PDGSKFISVSSDKKGIIYDGKTADKIGELSPE-----------DGH----------KGSVYAVSWSPD  244 (609)
Q Consensus       193 ~l~~s-------~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-----------~~h----------~~~V~~l~~spd  244 (609)
                      -+...       ++|.++++=.....|+.++. ++. +.++.-.           .+.          -..-..|++.++
T Consensus       377 gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~  454 (496)
T 3kya_A          377 GVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDV  454 (496)
T ss_dssp             EEEEECTTCCSSCCEEEEEEEGGGTEEEEECT-TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETT
T ss_pred             EEEEccccccccCCCeEEEEECCCCEEEEEeC-CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECC
Confidence            34443       45655555556678888873 332 2221000           010          122467888886


Q ss_pred             -CCeEEEEeCCCcEEEeecc
Q 007283          245 -GKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       245 -~~~l~s~s~d~~i~iwd~~  263 (609)
                       +.++++-+..+.||.+++.
T Consensus       455 ~g~lyVaD~~N~rIrki~~~  474 (496)
T 3kya_A          455 KEMFYVHDQVGHTIRTISME  474 (496)
T ss_dssp             TTEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEeCCCCEEEEEECC
Confidence             7777777777888888775

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.03  E-value=0.43  Score=50.15  Aligned_cols=226  Identities=8%  Similarity=-0.061  Sum_probs=130.1

Q ss_pred             CeEEEeCCCEEEEEeCCCCccccccc-cCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceeeEEEeecccceeEE
Q 007283           29 NSILYTNGRSVIILDLSNPLQVSIYG-EHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDL  106 (609)
Q Consensus        29 ~~l~~~~~~~~~i~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~  106 (609)
                      ..|++.++..|...++.+......+. ..-.....++|++.+..|. +-..++.|+.++...... ...+.........+
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM   85 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence            56778888899999997654322221 1234578999999766665 444678898888765432 22222222457789


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe-cCCCeEEEEeCCCCceeeecc
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC-GEDFLVNFYEGPPFKFKLSHR  185 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~-~~d~~i~~~~~~~~~~~~~~~  185 (609)
                      ++.+.+..|..+..+.  ..+.+...+.......+...-.....++++|.+..++.+- +....|...+..-.... .+.
T Consensus        86 AvD~~~~~LY~tD~~~--~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~-~l~  162 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGT--NRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT-TLV  162 (628)
T ss_dssp             EEETTTTEEEEEETTT--TEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-EEE
T ss_pred             EEEeCCCEEEEEECCC--CEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE-EEE
Confidence            9988877777664333  2344444443322222223445578999998666545543 33455655554322221 111


Q ss_pred             CcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          186 GHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ......+.|+++++++.|..+. ..+.|...+...... ..+..   .-..-.++++.. +.++.+-...+.|...|..
T Consensus       163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~---~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~  236 (628)
T 4a0p_A          163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIAD---DLPHPFGLTQYQ-DYIYWTDWSRRSIERANKT  236 (628)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEE---CCSCEEEEEEET-TEEEEEETTTTEEEEEETT
T ss_pred             CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeec---cCCCceEEEEEC-CEEEEecCCCCEEEEEECC
Confidence            2345578899999877666554 456788888754332 22211   112234666654 4455555556777777753

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=96.97  E-value=0.035  Score=55.65  Aligned_cols=153  Identities=9%  Similarity=0.082  Sum_probs=92.0

Q ss_pred             eeEEEEcC-CCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeC-C----CeEEEEEccCC
Q 007283          450 VTASAIAP-DGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV-N----REAIVWDRVSR  523 (609)
Q Consensus       450 ~~~~~~sp-~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~-d----~~v~iwd~~~~  523 (609)
                      ...++++| ++..|.+....+.|+.++..++.+..   +.........|+|+++|.++..+.. +    ..+...+....
T Consensus       139 P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~---~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~  215 (430)
T 3tc9_A          139 AVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST---VYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG  215 (430)
T ss_dssp             CCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE---EECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT
T ss_pred             CCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE---EecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc
Confidence            46678898 45556666555888888887665432   2224456889999999995555543 2    23444443322


Q ss_pred             ceEEeeecCCCCceEEEEECC-CCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCC-eEEEEeCCCc
Q 007283          524 EVKLKNMLYHTARINCLAWSP-NNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEH-SVVSSGEDAC  600 (609)
Q Consensus       524 ~~~~~~~~~h~~~i~~l~~s~-d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~-~l~s~s~D~~  600 (609)
                      ......+. .......++++| ++.++++-..++.|..++.+... .......+-...-..++|+ +++ .+++-...+.
T Consensus       216 ~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~-~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~  293 (430)
T 3tc9_A          216 FKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQE-TTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHY  293 (430)
T ss_dssp             SCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTE-EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTE
T ss_pred             eeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc-EEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCE
Confidence            11011111 123456789999 77777777778889999876432 1011111122345689999 667 5566667788


Q ss_pred             EEEEEcc
Q 007283          601 VRVWRLT  607 (609)
Q Consensus       601 i~~W~~~  607 (609)
                      |..++.+
T Consensus       294 I~~~~~d  300 (430)
T 3tc9_A          294 ILRSDYD  300 (430)
T ss_dssp             EEEEEEE
T ss_pred             EEEEeCC
Confidence            8887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.96  E-value=0.29  Score=46.91  Aligned_cols=231  Identities=12%  Similarity=0.090  Sum_probs=116.8

Q ss_pred             ceeEEeecCCCCeEEEeC-CCEEEEEeCCCCcccc------ccccCCCCcEEEEECCC----CCEEEEE--eCCCcEEEE
Q 007283           18 RGILISGHPKSNSILYTN-GRSVIILDLSNPLQVS------IYGEHAYPATVARFSPN----GEWIASA--DVSGTVRIW   84 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~------~~~~h~~~v~~~~~sp~----g~~las~--~~d~~i~vW   84 (609)
                      .|..+++.|||..++.-. .+.|++++..++....      ++....+....++|+|+    |.+-++=  ..+..|--|
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~  112 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRM  112 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEE
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEE
Confidence            566899999999888876 6788888765444211      11222455789999995    5544432  223344444


Q ss_pred             cCCCC----------ceeeEEEee-cccceeEEEECCCCCEEEEEECCCC-----------cceEEEEEcCCCC------
Q 007283           85 GAHND----------HVLKKEFRV-LSGRIDDLQWSPDGLRIVACGDGKG-----------KSLVRAFMWDSGT------  136 (609)
Q Consensus        85 d~~~~----------~~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~~~-----------~~~~~~~~~~~~~------  136 (609)
                      ....+          +.+...+.. ..+.-..++|.|||..++++|+...           ..++|+ .-+ ++      
T Consensus       113 ~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi-~~d-G~ip~~nP  190 (347)
T 3das_A          113 LYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM-TPD-GEPAPGNP  190 (347)
T ss_dssp             EBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE-CTT-SSBCTTCS
T ss_pred             EeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE-eCC-CCccCCCC
Confidence            44331          111112211 1224567999999999999886321           123333 112 11      


Q ss_pred             --eeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCce------------------eeeccCcccceEEEE
Q 007283          137 --NVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKF------------------KLSHRGHSNFVNCVR  195 (609)
Q Consensus       137 --~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~------------------~~~~~~h~~~v~~l~  195 (609)
                        ....+ .+|. ....++|+|++...++--+.|..-.+.-+..+..                  ...+..+......++
T Consensus       191 f~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~  269 (347)
T 3das_A          191 FPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIA  269 (347)
T ss_dssp             STTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEE
T ss_pred             CCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceE
Confidence              01112 2443 3457899998765444445543222221111100                  011111112345566


Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCccccc-cCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          196 FSPDGSKFISVSSDKKGIIYDGKTADKIGE-LSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       196 ~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      |. +|.+++..-....|....+.....+.. .....+..+.+..+...|||.++++..
T Consensus       270 ~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          270 YA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             EE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             EE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            65 355555555555555444433221110 001123346789999999997665543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=96.90  E-value=0.65  Score=50.12  Aligned_cols=158  Identities=9%  Similarity=-0.049  Sum_probs=92.4

Q ss_pred             CceeEEeecCCCCeEEEeC--CCEEEEEeCCCC----ccccccccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCC
Q 007283           17 GRGILISGHPKSNSILYTN--GRSVIILDLSNP----LQVSIYGEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHND   89 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~----~~~~~~~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~   89 (609)
                      +.+..|.+++.++.|++..  .+.|+.+++...    .....+...-.....+++.+.++.|. +-...+.|++.++...
T Consensus       424 ~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~  503 (791)
T 3m0c_C          424 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  503 (791)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred             CceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC
Confidence            4567888888777676653  367777787642    22223332334577899998886665 4446788999988754


Q ss_pred             ceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCe
Q 007283           90 HVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL  169 (609)
Q Consensus        90 ~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~  169 (609)
                      . ....+...-.....|++.|.+.+|..+.-+.. ..+.....+.......+.........|+++|.+..++.+=.....
T Consensus       504 ~-~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~-~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~  581 (791)
T 3m0c_C          504 K-RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTP-AKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  581 (791)
T ss_dssp             S-EEEEEECTTCCEEEEEEETTTTEEEEEECSSS-CEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             e-EEEEEeCCCCCcceEEEecCCCCEEEecCCCC-CeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCc
Confidence            3 22222223345789999998666665543321 233334444322222233334567889999877755555455567


Q ss_pred             EEEEeCC
Q 007283          170 VNFYEGP  176 (609)
Q Consensus       170 i~~~~~~  176 (609)
                      |...+..
T Consensus       582 I~~~d~d  588 (791)
T 3m0c_C          582 ISSIDVN  588 (791)
T ss_dssp             EEEEETT
T ss_pred             EEEEecC
Confidence            7777654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.88  E-value=0.011  Score=63.29  Aligned_cols=204  Identities=10%  Similarity=-0.049  Sum_probs=108.7

Q ss_pred             ceeEEeecCCCCeEEEeC--CCEEEEEeCCC----CccccccccCCCCcEEEEECCCC-CEEEEEeCCCcEEEEcCCCCc
Q 007283           18 RGILISGHPKSNSILYTN--GRSVIILDLSN----PLQVSIYGEHAYPATVARFSPNG-EWIASADVSGTVRIWGAHNDH   90 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~----~~~~~~~~~h~~~v~~~~~sp~g-~~las~~~d~~i~vWd~~~~~   90 (609)
                      ++..+.++++++.|++..  .+.|..+++.+    ......+...-.....+++.+.+ ++.++-...+.|.+.+.....
T Consensus       407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~  486 (699)
T 1n7d_A          407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  486 (699)
T ss_dssp             TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCC
T ss_pred             ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCc
Confidence            456778888877777764  46788888865    22222222111235568898654 545554567889999987543


Q ss_pred             eeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCCC
Q 007283           91 VLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDF  168 (609)
Q Consensus        91 ~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~  168 (609)
                      . ...+.........+++.|++.+|..+..+. ...  ++..+. +.....+. ..-.....++|+|++..++++-...+
T Consensus       487 ~-~~l~~~~~~~P~giavDp~~g~ly~td~~~-~~~--I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~  562 (699)
T 1n7d_A          487 R-KTLFREQGSKPRAIVVDPVHGFMYWTDWGT-PAK--IKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  562 (699)
T ss_dssp             E-EEECCCSSCCCCCEECCSSSSCCEECCCSS-SCC--EEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTT
T ss_pred             e-EEEEeCCCCCcceEEEccCCCcEEEcccCC-CCe--EEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCC
Confidence            2 222222223467889999766555433221 112  333332 22222221 22234567899998766566666677


Q ss_pred             eEEEEeCCCCceeeecc--CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283          169 LVNFYEGPPFKFKLSHR--GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       169 ~i~~~~~~~~~~~~~~~--~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      .|..++...........  +.......|++..+ .++++....+.|..++..+++.+..+
T Consensus       563 ~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i  621 (699)
T 1n7d_A          563 SISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLL  621 (699)
T ss_dssp             EEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECC
T ss_pred             eEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEe
Confidence            88888764322111111  11122233444433 34445555667777776666655443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.83  E-value=0.0074  Score=64.65  Aligned_cols=230  Identities=9%  Similarity=-0.067  Sum_probs=115.2

Q ss_pred             CeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCCC---ceeeEEEeeccccee
Q 007283           29 NSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHND---HVLKKEFRVLSGRID  104 (609)
Q Consensus        29 ~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~~---~~~~~~~~~~~~~v~  104 (609)
                      ..|++.+...|...++........... -..+..++|++.+..|..++ ..+.|+.+++...   ......+........
T Consensus       378 ~~ll~~~~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~  456 (699)
T 1n7d_A          378 AYLFFTNRHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  456 (699)
T ss_dssp             CCBCCCCTTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC
T ss_pred             eeEEecCccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc
Confidence            345566667788888876555433332 23466889999777666554 5678998887641   111111111112356


Q ss_pred             EEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEec-CCCeEEEEeCCCCceeee
Q 007283          105 DLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCG-EDFLVNFYEGPPFKFKLS  183 (609)
Q Consensus       105 ~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~-~d~~i~~~~~~~~~~~~~  183 (609)
                      .+++.+.+..|..+...  ...+.+...+.......+.........++++|.+..++.+-. ..+.|...+.........
T Consensus       457 glavD~~~g~LY~tD~~--~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          457 GLAVDWIHSNIYWTDSV--LGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CEECCCSSSBCEECCTT--TSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             eEEEEeeCCcEEEEecc--CCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            78888665555443222  223444444433222222222234567788886655444432 224555554322111111


Q ss_pred             ccCcccceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeec
Q 007283          184 HRGHSNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDI  262 (609)
Q Consensus       184 ~~~h~~~v~~l~~s~dg~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~  262 (609)
                      ........+.|+|+|++..| ++-+..+.|..++....... .+....+.-..-..|++..+ .++++....+.|..++.
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~-~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~  612 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRK-TILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR  612 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCE-EECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceE-EEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence            11223345678999986544 44445678888887543221 22110011111233444433 34445556678888875


Q ss_pred             c
Q 007283          263 S  263 (609)
Q Consensus       263 ~  263 (609)
                      .
T Consensus       613 ~  613 (699)
T 1n7d_A          613 L  613 (699)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.72  E-value=0.38  Score=45.79  Aligned_cols=191  Identities=15%  Similarity=0.170  Sum_probs=106.9

Q ss_pred             EEeecCC---CCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCC----CCE--E-E-EEeC--CCcEEEEcC
Q 007283           21 LISGHPK---SNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPN----GEW--I-A-SADV--SGTVRIWGA   86 (609)
Q Consensus        21 ~~~~~~~---~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~----g~~--l-a-s~~~--d~~i~vWd~   86 (609)
                      ++=.||.   ...++.+ ....+.+||+ ++++++.+..  +.++.+.+-|+    |+.  | + |-..  +.+|+++++
T Consensus        30 avw~~~~dp~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i  106 (355)
T 3amr_A           30 AIWLDPKTPQNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI  106 (355)
T ss_dssp             EEECCSSCGGGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred             cEecCCCCCCccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence            5656664   2233333 4578999999 7777776653  45777766663    332  3 3 3334  578999977


Q ss_pred             CCCceeeEEEee------c-ccceeEEEE--CCC-CCEEEEEECCCCcceEEEEEc-C--CC----CeeEEEecCCccEE
Q 007283           87 HNDHVLKKEFRV------L-SGRIDDLQW--SPD-GLRIVACGDGKGKSLVRAFMW-D--SG----TNVGEFDGHSRRVL  149 (609)
Q Consensus        87 ~~~~~~~~~~~~------~-~~~v~~~~~--spd-g~~l~~~~~~~~~~~~~~~~~-~--~~----~~~~~~~~h~~~v~  149 (609)
                      +...........      . ...+..+|+  +|+ ++..+.+.+..+  .+..|.. +  .+    +.+..|.- ...+.
T Consensus       107 Dp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G--~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~E  183 (355)
T 3amr_A          107 DGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEG--EFEQYELKADKNGYISGKKVRAFKM-NSQTE  183 (355)
T ss_dssp             CTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSS--EEEEEEEEECTTSCEEEEEEEEEEC-SSCEE
T ss_pred             CCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCC--eEEEEEEEeCCCCcccceEEEEecC-CCCcc
Confidence            422211222211      1 145677888  785 554455554332  2222222 1  12    23445543 34788


Q ss_pred             EEEEeeCCCeEEEEecCCCeEEEEeCCC-----Cceeeec-cCcc-cceEEEEE--cCCCC-EEEEEe-CCCcEEEEeCC
Q 007283          150 SCAFKPSRPFRIATCGEDFLVNFYEGPP-----FKFKLSH-RGHS-NFVNCVRF--SPDGS-KFISVS-SDKKGIIYDGK  218 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~~-----~~~~~~~-~~h~-~~v~~l~~--s~dg~-~l~s~~-~d~~i~iwd~~  218 (609)
                      .|...+.... +..+-++.-|-.++.++     .+.+... .++. ..+..|++  .++|+ +|++++ .+.+..+||.+
T Consensus       184 gcvvDd~~g~-Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          184 GMAADDEYGR-LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEEEETTTTE-EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             eEEEcCCCCe-EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            9999987775 66677775544445432     2333332 2333 36888887  56666 565555 56789999865

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=96.39  E-value=1.2  Score=46.44  Aligned_cols=195  Identities=12%  Similarity=0.029  Sum_probs=101.8

Q ss_pred             CCeEEEeCCCEEEEEeCCCCccccccccCCCCc---------EEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee
Q 007283           28 SNSILYTNGRSVIILDLSNPLQVSIYGEHAYPA---------TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV   98 (609)
Q Consensus        28 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v---------~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~   98 (609)
                      +..++......++.+|..+++++-.+.......         ..+++  .+..|..++.|+.+.-.|..+++.+-. +..
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~-~~~  145 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWK-KKF  145 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEE-EEC
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEee-ecC
Confidence            333344443458888988888754443322110         11222  245566677899999999998875432 222


Q ss_pred             ccc----ce-eEEEECC---CCCEEEEEECC----CCcceEEEEEcCCCCeeEEEecCCcc-------------------
Q 007283           99 LSG----RI-DDLQWSP---DGLRIVACGDG----KGKSLVRAFMWDSGTNVGEFDGHSRR-------------------  147 (609)
Q Consensus        99 ~~~----~v-~~~~~sp---dg~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~~-------------------  147 (609)
                      ...    .+ .......   +|+.++.++..    .....+..++-.+++.+.........                   
T Consensus       146 ~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~  225 (582)
T 1flg_A          146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             CCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCccccccccccccc
Confidence            110    11 1111111   24433333321    01223455555566666544321000                   


Q ss_pred             ---------------------E-EEEEEeeCCCeEEEEecC-------------------C----CeEEEEeCCCCceee
Q 007283          148 ---------------------V-LSCAFKPSRPFRIATCGE-------------------D----FLVNFYEGPPFKFKL  182 (609)
Q Consensus       148 ---------------------v-~~~~~~p~~~~~i~t~~~-------------------d----~~i~~~~~~~~~~~~  182 (609)
                                           + ...+++|....+++..+.                   |    +.+.-+|..+++..-
T Consensus       226 w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W  305 (582)
T 1flg_A          226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEE
Confidence                                 0 124566666654443331                   2    578888888887665


Q ss_pred             ecc--Ccc--------cceEEEEEc-CCCC---EEEEEeCCCcEEEEeCCCCcccccc
Q 007283          183 SHR--GHS--------NFVNCVRFS-PDGS---KFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       183 ~~~--~h~--------~~v~~l~~s-~dg~---~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      .+.  .|.        .++. +... .+|+   .++.++.+|.++++|..+++.+...
T Consensus       306 ~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~  362 (582)
T 1flg_A          306 FYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAF  362 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEeccc
Confidence            542  232        1221 1221 4674   6778899999999999998876543

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.38  E-value=0.2  Score=48.22  Aligned_cols=186  Identities=10%  Similarity=0.098  Sum_probs=98.5

Q ss_pred             EeecCCCCeEEEe-------------CCCEEEEEeCCCC--ccc-ccccc-----CCCCcEEEEECC--CCC--EEEEEe
Q 007283           22 ISGHPKSNSILYT-------------NGRSVIILDLSNP--LQV-SIYGE-----HAYPATVARFSP--NGE--WIASAD   76 (609)
Q Consensus        22 ~~~~~~~~~l~~~-------------~~~~~~i~~~~~~--~~~-~~~~~-----h~~~v~~~~~sp--~g~--~las~~   76 (609)
                      +...|+|..++.+             ..+.|.++|+.++  +.. ..+.+     ..-.--.+.+.+  +|+  +++.-.
T Consensus        55 i~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh  134 (355)
T 3sre_A           55 LEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNH  134 (355)
T ss_dssp             EEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEEC
T ss_pred             eEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEEC
Confidence            3456777655554             3467889998743  211 11222     112333455544  454  444433


Q ss_pred             C--CCcEEEEcCCCCc-ee--eEEEeec-ccceeEEEECCCCCEEEEEECCC------------CcceEEEEEcCCCCee
Q 007283           77 V--SGTVRIWGAHNDH-VL--KKEFRVL-SGRIDDLQWSPDGLRIVACGDGK------------GKSLVRAFMWDSGTNV  138 (609)
Q Consensus        77 ~--d~~i~vWd~~~~~-~~--~~~~~~~-~~~v~~~~~spdg~~l~~~~~~~------------~~~~~~~~~~~~~~~~  138 (609)
                      .  +.+|.||+++.+. .+  ...+... -.....+++.|+|..+++..-..            .....+++.++.++ +
T Consensus       135 ~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~~-~  213 (355)
T 3sre_A          135 PGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND-V  213 (355)
T ss_dssp             STTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTTC-C
T ss_pred             CCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECCe-E
Confidence            3  5789999887543 21  1222221 12467899999997666532110            11224555566543 2


Q ss_pred             EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC-CCcee--eeccCcccceEEEEEcC-CCCEEEEEeCC
Q 007283          139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-PFKFK--LSHRGHSNFVNCVRFSP-DGSKFISVSSD  209 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~-~~~~~--~~~~~h~~~v~~l~~s~-dg~~l~s~~~d  209 (609)
                      ..+...-..-+.++|+|++....++-+..+.|..|+.. .++..  ..+ ......-.+++.+ +|++.+++..+
T Consensus       214 ~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          214 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence            22323334567899999998766666667778877753 23221  122 1123345567777 47766555433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.35  E-value=0.34  Score=48.77  Aligned_cols=155  Identities=12%  Similarity=0.033  Sum_probs=88.7

Q ss_pred             cEEEEECCC--CCEEEEEeCCCcEEEEcCCCCceeeEEEeec---ccceeEEEE-------CCCCCEEEEEECCCC----
Q 007283           60 ATVARFSPN--GEWIASADVSGTVRIWGAHNDHVLKKEFRVL---SGRIDDLQW-------SPDGLRIVACGDGKG----  123 (609)
Q Consensus        60 v~~~~~sp~--g~~las~~~d~~i~vWd~~~~~~~~~~~~~~---~~~v~~~~~-------spdg~~l~~~~~~~~----  123 (609)
                      -..++|+|.  +++.++-...+.|++.|..++.+. ......   ......++|       +++|++|++..+...    
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~-~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLS-SPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEE-EEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEE-EEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            568899993  555555544567888888775532 222221   124789999       999997777665431    


Q ss_pred             cceEEEEEcCC-CCee-----EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC-------CCce----------
Q 007283          124 KSLVRAFMWDS-GTNV-----GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP-------PFKF----------  180 (609)
Q Consensus       124 ~~~~~~~~~~~-~~~~-----~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~-------~~~~----------  180 (609)
                      ..-+.+...+. +...     ..+.. -.....++++|++..++++-..++.+..++..       +++.          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence            11122222222 1110     12211 11234678899766667777777888888765       3332          


Q ss_pred             ---eeeccCcccceEEEEEcCCCCEEEEE-eCCCcEEEEe
Q 007283          181 ---KLSHRGHSNFVNCVRFSPDGSKFISV-SSDKKGIIYD  216 (609)
Q Consensus       181 ---~~~~~~h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd  216 (609)
                         .....+....-..++|+|+|+.|..+ +....|+.++
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid  338 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSD  338 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEe
Confidence               00111223345789999999954444 4567777754

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.93  E-value=0.39  Score=45.25  Aligned_cols=155  Identities=11%  Similarity=0.122  Sum_probs=95.9

Q ss_pred             eeEEEEcCCCCEEEEEe-CCCcEEEEEecCCeeeeeEEEecC------CCceEEEEE---CCCCCEEEEEeC--------
Q 007283          450 VTASAIAPDGSEAIIGS-QDGKLRVYSIRGDTLTEEAVLEKH------RGAVSVIRY---SPDVSMFASGDV--------  511 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs-~dg~i~iw~~~~~~~~~~~~~~~h------~~~i~~v~~---s~~~~~l~s~s~--------  511 (609)
                      ..+.++.+....+..++ ..++|..|+...+..... .+.+-      ...+..|.+   .|+++++++...        
T Consensus        15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g   93 (334)
T 2p9w_A           15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFAD   93 (334)
T ss_dssp             CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTS
T ss_pred             CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccc
Confidence            34567766444555554 799999998765543322 22221      114578999   688888886442        


Q ss_pred             -----CCeEEEEEcc---CCceE-EeeecCC-----------CCceEEEEECCCCcEEEEEeCC-CeEEEEEcCCCCCcc
Q 007283          512 -----NREAIVWDRV---SREVK-LKNMLYH-----------TARINCLAWSPNNSMVATGSLD-TCVIIYEIDKPASSR  570 (609)
Q Consensus       512 -----d~~v~iwd~~---~~~~~-~~~~~~h-----------~~~i~~l~~s~d~~~l~s~s~D-~~v~vw~~~~~~~~~  570 (609)
                           +..+..||+.   +++.. ...+...           ......++..++|+..++++.- +.|...+.+  +...
T Consensus        94 ~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pd--G~~~  171 (334)
T 2p9w_A           94 QSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSAD--GKTV  171 (334)
T ss_dssp             CCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTT--SCCE
T ss_pred             cccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCC--CCEE
Confidence                 6789999987   44332 2222111           1248899999999999998888 765554433  2121


Q ss_pred             eeEe-----ccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          571 MTIK-----GAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       571 ~~~~-----~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ....     .......+.+++. ++..|+....++.+..+++.
T Consensus       172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~  214 (334)
T 2p9w_A          172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVS  214 (334)
T ss_dssp             EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECS
T ss_pred             eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCC
Confidence            1111     1122346789999 67777766558888887764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.77  E-value=1.3  Score=41.53  Aligned_cols=211  Identities=7%  Similarity=0.018  Sum_probs=110.9

Q ss_pred             cCCCCeEEEeC---CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeC-C-------------CcEEEEcCC
Q 007283           25 HPKSNSILYTN---GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADV-S-------------GTVRIWGAH   87 (609)
Q Consensus        25 ~~~~~~l~~~~---~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~-d-------------~~i~vWd~~   87 (609)
                      .++|..|++.+   +..++..+...... ..+..    -.+--++|+|.+|.-+.. +             ..|+..+.+
T Consensus        22 ~~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~----~~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~d   96 (302)
T 3s25_A           22 CESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSN----DTAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRN   96 (302)
T ss_dssp             EEETTEEEEEEGGGTTEEEEEETTSCSC-EEEEE----EEEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETT
T ss_pred             EEeCCEEEEEeCCCCceEEEEcCCCCCC-EEccC----CceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCC
Confidence            45778888875   46666666544333 33432    234557899999985543 2             356666665


Q ss_pred             CCceeeEEEeecccceeEEEECCCCCEEEEEE-CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecC
Q 007283           88 NDHVLKKEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE  166 (609)
Q Consensus        88 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~  166 (609)
                      ..+.  ..+..    -....|+|++++|.-+. +..+...+.....+. +....+..+..    .+++|++..+.-+...
T Consensus        97 g~~~--~~l~~----~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG-s~~~~lt~~~~----~~~~~~g~~iy~t~~g  165 (302)
T 3s25_A           97 GHGS--TVLDP----DPCIYASLIGNYIYYLHYDTQTATSLYRIRIDG-EEKKKIKNHYL----FTCNTSDRYFYYNNPK  165 (302)
T ss_dssp             SCCC--EEEEC----SCEEEEEEETTEEEEEEESSSSCEEEEEEETTS-CCCEEEESSCC----CCSEEETTEEEEECTT
T ss_pred             CCcc--eEeec----CCccEEEEeCCEEEEEeecCCCCceEEEEECCC-CCeEEEeCCCc----eEeeEECCEEEEEeCC
Confidence            5431  12221    12347889999988775 111222344444443 33334444432    4567888875555443


Q ss_pred             CCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283          167 DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK--KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD  244 (609)
Q Consensus       167 d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd  244 (609)
                      ...|..-+.........+.+.   .. ..+.|++.+|+-...+.  .|..-+..... ...+.     ...+  ..|+|+
T Consensus       166 ~~~Iy~~~l~g~~~~~l~~~~---~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt-----~~~~--~~~~~~  233 (302)
T 3s25_A          166 NGQLYRYDTASQSEALFYDCN---CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPN-PVVLT-----EANI--EHYNVY  233 (302)
T ss_dssp             TCCEEEEETTTTEEEEEECSC---EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCC-CEECS-----CSCE--EEEEEE
T ss_pred             CceEEEEECCCCCEEEEeCCC---cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCC-eEEEe-----CCCc--ceEEEC
Confidence            455665555444333333321   11 23568888877665432  44444444333 22221     1223  347888


Q ss_pred             CCeEEEEeC--CCcEEEeecc
Q 007283          245 GKQVLTASA--DKSAKVWDIS  263 (609)
Q Consensus       245 ~~~l~s~s~--d~~i~iwd~~  263 (609)
                      +.+|..+..  .+.|..-++.
T Consensus       234 g~~Iy~~~~~~~~~i~~~~~D  254 (302)
T 3s25_A          234 GSLIFYQRGGDNPALCVVKND  254 (302)
T ss_dssp             TTEEEEEECSSSCEEEEEETT
T ss_pred             CCEEEEEECCCCcEEEEEECC
Confidence            888876532  3445555544

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=95.72  E-value=0.59  Score=44.04  Aligned_cols=158  Identities=10%  Similarity=0.087  Sum_probs=92.9

Q ss_pred             EEEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecc------cceeEEEE---CCCCCEEEEEECC---------
Q 007283           61 TVARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLS------GRIDDLQW---SPDGLRIVACGDG---------  121 (609)
Q Consensus        61 ~~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~------~~v~~~~~---spdg~~l~~~~~~---------  121 (609)
                      .+++|++ +|++.++.-..++|-.|+...+......+....      ..+..+.|   .|+|+.++++..+         
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~   95 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQS   95 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccccccc
Confidence            4678977 555556655799999999875543222222211      13578999   6887655543210         


Q ss_pred             -CCcceEEEEEcC---CCCeeEEEe--cC-----------CccEEEEEEeeCCCeEEEEecCC-CeEEEEeCCCCceee-
Q 007283          122 -KGKSLVRAFMWD---SGTNVGEFD--GH-----------SRRVLSCAFKPSRPFRIATCGED-FLVNFYEGPPFKFKL-  182 (609)
Q Consensus       122 -~~~~~~~~~~~~---~~~~~~~~~--~h-----------~~~v~~~~~~p~~~~~i~t~~~d-~~i~~~~~~~~~~~~-  182 (609)
                       .+...+..++.+   +++.+....  ..           ......++..++|.. .++++.. ..|...+..-..... 
T Consensus        96 ~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gna-YVt~s~~~~~I~rV~pdG~~~~~~  174 (334)
T 2p9w_A           96 SHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNS-YVAFALGMPAIARVSADGKTVSTF  174 (334)
T ss_dssp             SSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCE-EEEEEESSCEEEEECTTSCCEEEE
T ss_pred             cCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCE-EEeCCCCCCeEEEEeCCCCEEeee
Confidence             112335556666   555544332  21           124778999999874 5656555 544444322111110 


Q ss_pred             --ec--cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 007283          183 --SH--RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT  219 (609)
Q Consensus       183 --~~--~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~  219 (609)
                        ..  .......+.++++|+|+.|++...++.+..+|...
T Consensus       175 ~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          175 AWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             eecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence              11  12233467899999999888887799999999774

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.54  E-value=1.8  Score=42.14  Aligned_cols=66  Identities=6%  Similarity=-0.001  Sum_probs=47.4

Q ss_pred             EeecCCCCeEEEeCCCEEEEEeCCCCccccccccC----CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCC
Q 007283           22 ISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEH----AYPATVARFSPNGEWIASADVSGTVRIWGAHN   88 (609)
Q Consensus        22 ~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h----~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~   88 (609)
                      ....-+|.-|+...|+.++..++.+....+.+.--    -+.|..+..||+|++||..+ +.+|.|=.+..
T Consensus        26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~   95 (452)
T 3pbp_A           26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPW   95 (452)
T ss_dssp             EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCT
T ss_pred             EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecC
Confidence            34445678888888999999998754433333321    13588899999999999774 56888887763

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.50  E-value=1.9  Score=41.43  Aligned_cols=197  Identities=18%  Similarity=0.165  Sum_probs=110.3

Q ss_pred             EEEEECCCCCEEEEE------------eCCCcEEEEcCCCC--ceeeEEEee--c---ccceeEEEECC--CCC-EEEEE
Q 007283           61 TVARFSPNGEWIASA------------DVSGTVRIWGAHND--HVLKKEFRV--L---SGRIDDLQWSP--DGL-RIVAC  118 (609)
Q Consensus        61 ~~~~~sp~g~~las~------------~~d~~i~vWd~~~~--~~~~~~~~~--~---~~~v~~~~~sp--dg~-~l~~~  118 (609)
                      ..+++.|+|..+.++            ..+|.|-++|..+.  +.....++.  .   .-..-.+.+.+  ||. +|+++
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vv  132 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  132 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEE
Confidence            345678888766665            26888999998742  322222332  1   12345566655  454 67777


Q ss_pred             ECCCCcceEEEEEcCCCCe----eEEEecC-CccEEEEEEeeCCCeEEEEec-----------------CCCeEEEEeCC
Q 007283          119 GDGKGKSLVRAFMWDSGTN----VGEFDGH-SRRVLSCAFKPSRPFRIATCG-----------------EDFLVNFYEGP  176 (609)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~----~~~~~~h-~~~v~~~~~~p~~~~~i~t~~-----------------~d~~i~~~~~~  176 (609)
                      ...+....+.++.++.+..    +..+.+. -...+.+.+.|+|.+ .++..                 ..+.+..++. 
T Consensus       133 nh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~f-yvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-  210 (355)
T 3sre_A          133 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-  210 (355)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-
T ss_pred             ECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCE-EecCCcEeCCcccccchhhccCCccEEEEEEC-
Confidence            7665556677777775432    2234333 245789999999874 44432                 1133444443 


Q ss_pred             CCceeeeccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECC-CCCeEEEEeCC
Q 007283          177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP-DGKQVLTASAD  254 (609)
Q Consensus       177 ~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~d  254 (609)
                       .+... .......-+.++|+||++.|..+. ..+.|..|+......+...... ...+..-.+++.+ +|.+.+++..+
T Consensus       211 -~~~~~-~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          211 -NDVRV-VAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             -TCCEE-EEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             -CeEEE-eecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence             22222 122234568899999998766654 5678888887532212111001 1134456788888 58877766533


Q ss_pred             -CcEEEeec
Q 007283          255 -KSAKVWDI  262 (609)
Q Consensus       255 -~~i~iwd~  262 (609)
                       +.|..|+.
T Consensus       288 g~~v~~~~P  296 (355)
T 3sre_A          288 GMRIFFYDA  296 (355)
T ss_dssp             HHHHHSCCT
T ss_pred             ceEEEEECC
Confidence             34444443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.42  E-value=0.56  Score=41.16  Aligned_cols=103  Identities=9%  Similarity=0.079  Sum_probs=61.5

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCee----eeeEEEe--cCCCceEEEEECCCCCEEEEEeCCCeEEEEEccC
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTL----TEEAVLE--KHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS  522 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~----~~~~~~~--~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~  522 (609)
                      .+..++++|+|.+.++  .+|.|+-.+..+...    .....+.  +-. .-.++.|.|+|.+.++  .|+.++-++.-+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            4678999999998777  677654444322110    0001110  111 1378899999999998  669888776422


Q ss_pred             Cce-EE--eeecCCC---CceEEEEECCCCcEEEEEeCCCeE
Q 007283          523 REV-KL--KNMLYHT---ARINCLAWSPNNSMVATGSLDTCV  558 (609)
Q Consensus       523 ~~~-~~--~~~~~h~---~~i~~l~~s~d~~~l~s~s~D~~v  558 (609)
                      ... ..  ...+..+   ..+..|.|.|+|.+.+..  |+.+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~l  156 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQF  156 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcE
Confidence            111 00  0000011   467999999999987766  7764

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=95.39  E-value=2.2  Score=41.66  Aligned_cols=235  Identities=11%  Similarity=0.102  Sum_probs=138.1

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEE-CCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARF-SPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~-sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      .+.-||..+.|+--+|..+.||++++...+..+.-. ++|.-=+| +|+  .|+-. .+..|.-|+++........|.-|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis~~--~l~lV-T~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN--TVALV-TDNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEETT--EEEEE-CSSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecCCC--eEEEE-cCCeeEEecccCCCCchhheecc
Confidence            566899999999888999999999887665544433 34544444 343  34333 24579999987533222334333


Q ss_pred             ----ccceeEEEECCCCCEEEEEE----CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeC--CCeEEEEecC---
Q 007283          100 ----SGRIDDLQWSPDGLRIVACG----DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS--RPFRIATCGE---  166 (609)
Q Consensus       100 ----~~~v~~~~~spdg~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~--~~~~i~t~~~---  166 (609)
                          +..|-..+-++|.++++.+|    ++.-...+.++..+.+. -..+.||......+.+.-+  ...+++-+.+   
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence                34688899999999999877    33233344555555433 2345677654443333211  1122332222   


Q ss_pred             CCeEEEEeCCC-------C-ceeee-c---cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCcc
Q 007283          167 DFLVNFYEGPP-------F-KFKLS-H---RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKG  234 (609)
Q Consensus       167 d~~i~~~~~~~-------~-~~~~~-~---~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~  234 (609)
                      .+.+.+-+...       + +.... +   ....+.--++..++.-..+...+.-|.+.+||.+++.++..-..   ...
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrI---s~~  301 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGE  301 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSS
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecc---cCC
Confidence            24566665421       1 11001 1   11234445788888877888889999999999999988764321   234


Q ss_pred             ceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          235 SVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       235 ~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .|...+-+....-++.....|.|.--.++
T Consensus       302 ~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~  330 (494)
T 1bpo_A          302 TIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (494)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEEEC
T ss_pred             ceEEecccCCCCcEEEEccCceEEEEEEc
Confidence            45555555555556666667766655554

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.97  E-value=2  Score=43.05  Aligned_cols=104  Identities=13%  Similarity=0.110  Sum_probs=58.8

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEec------CCCceEEEEECCC----CCEEEEEeC--------
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEK------HRGAVSVIRYSPD----VSMFASGDV--------  511 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~------h~~~i~~v~~s~~----~~~l~s~s~--------  511 (609)
                      ...+++.|||+++++-...+.|++++...+.......+..      -.+.+..|+|+||    +.+.++-+.        
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~  108 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK  108 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence            5688999999977765444568877654333322112211      2456789999994    555554432        


Q ss_pred             ----CCeEEEEEccCC-------ceEEeeec-CCCCceEEEEECCCCcEEEEEe
Q 007283          512 ----NREAIVWDRVSR-------EVKLKNML-YHTARINCLAWSPNNSMVATGS  553 (609)
Q Consensus       512 ----d~~v~iwd~~~~-------~~~~~~~~-~h~~~i~~l~~s~d~~~l~s~s  553 (609)
                          ...|.-++....       +..+..+. ...+....++|.|||++.++-+
T Consensus       109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                234555543321       11111111 1224578999999999777643

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=94.89  E-value=0.88  Score=43.92  Aligned_cols=100  Identities=18%  Similarity=0.257  Sum_probs=59.7

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEE---ecCCCceEEEEECCC----CCEEEEEeCC-----CeEEE
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVL---EKHRGAVSVIRYSPD----VSMFASGDVN-----REAIV  517 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~---~~h~~~i~~v~~s~~----~~~l~s~s~d-----~~v~i  517 (609)
                      ...+++.|||+++++ ..+|.|++++  .+.......+   ..-......|+|+|+    +.+.++-...     ..|..
T Consensus        33 P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r  109 (352)
T 2ism_A           33 PWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVR  109 (352)
T ss_dssp             EEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEE
Confidence            567899999996555 5679999988  3332211111   112356889999998    4444444332     56777


Q ss_pred             EEccCCce-----EEeeec---CCCCceEEEEECCCCcEEEEE
Q 007283          518 WDRVSREV-----KLKNML---YHTARINCLAWSPNNSMVATG  552 (609)
Q Consensus       518 wd~~~~~~-----~~~~~~---~h~~~i~~l~~s~d~~~l~s~  552 (609)
                      ++......     .+..+.   ........++|.|||.+.++-
T Consensus       110 ~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  152 (352)
T 2ism_A          110 LRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTT  152 (352)
T ss_dssp             EEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEEC
T ss_pred             EEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEE
Confidence            77654311     111121   111234689999999876664

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=94.87  E-value=1.1  Score=42.76  Aligned_cols=53  Identities=19%  Similarity=0.171  Sum_probs=36.4

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceee-EEE----eecccceeEEEECCC
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK-KEF----RVLSGRIDDLQWSPD  111 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~-~~~----~~~~~~v~~~~~spd  111 (609)
                      .-..++|.|||+++++-...|.|++++..+++... ..+    ....+....++|+||
T Consensus        33 ~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pd   90 (347)
T 3das_A           33 SPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPD   90 (347)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTT
T ss_pred             CceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccc
Confidence            46789999999988887668999998765443211 111    112345788999996

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=94.79  E-value=2.7  Score=42.01  Aligned_cols=104  Identities=12%  Similarity=0.054  Sum_probs=60.8

Q ss_pred             ceeEEeecCCCCeEEEeCC-CEEEEEeCCCCcccc--ccc------cCCCCcEEEEECCC----CCEEEEEeC------C
Q 007283           18 RGILISGHPKSNSILYTNG-RSVIILDLSNPLQVS--IYG------EHAYPATVARFSPN----GEWIASADV------S   78 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~-~~~~i~~~~~~~~~~--~~~------~h~~~v~~~~~sp~----g~~las~~~------d   78 (609)
                      .|..+++.|+|..++.-.. ..|++++..++....  .+.      ...+....++|+||    |.+.++-+.      +
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            6779999999998887754 578887765443321  111      12345778999994    544444322      1


Q ss_pred             ------CcEEEEcCCCC--c-----eeeEEEee-cccceeEEEECCCCCEEEEEECC
Q 007283           79 ------GTVRIWGAHND--H-----VLKKEFRV-LSGRIDDLQWSPDGLRIVACGDG  121 (609)
Q Consensus        79 ------~~i~vWd~~~~--~-----~~~~~~~~-~~~~v~~~~~spdg~~l~~~~~~  121 (609)
                            ..|.-++...+  +     .+...+.. ..+....++|.|||..++++|+.
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~  164 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQ  164 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCT
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCC
Confidence                  13333443221  1     11111211 12346889999999999998874

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=94.45  E-value=3.7  Score=39.49  Aligned_cols=186  Identities=14%  Similarity=0.119  Sum_probs=88.8

Q ss_pred             CceeEEeecCC----CCeEEEeC----C----CEEEEEeCCCCc-----cccc---cc-cCCCCcEEEEECCCCCEEEEE
Q 007283           17 GRGILISGHPK----SNSILYTN----G----RSVIILDLSNPL-----QVSI---YG-EHAYPATVARFSPNGEWIASA   75 (609)
Q Consensus        17 ~~~~~~~~~~~----~~~l~~~~----~----~~~~i~~~~~~~-----~~~~---~~-~h~~~v~~~~~sp~g~~las~   75 (609)
                      +.+..|+++|+    +...++-.    .    ..|..++.....     ....   +. +....-..++|.|||++.++.
T Consensus        73 ~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~  152 (354)
T 3a9g_A           73 AGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITT  152 (354)
T ss_dssp             CSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEEC
T ss_pred             CceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEE
Confidence            45788999997    44333322    1    567777765431     1111   11 111234678999999987764


Q ss_pred             eCC-------------CcEEEEcCCCCce-------eeEEEeecccceeEEEECC-CCCEEEEEECCCCcceEEEEEcCC
Q 007283           76 DVS-------------GTVRIWGAHNDHV-------LKKEFRVLSGRIDDLQWSP-DGLRIVACGDGKGKSLVRAFMWDS  134 (609)
Q Consensus        76 ~~d-------------~~i~vWd~~~~~~-------~~~~~~~~~~~v~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~  134 (609)
                      +..             |.|.-.+.+.. .       ....+..--.....++|+| +|+.+++ -.+... .-.+.....
T Consensus       153 G~~~~~~~~~d~~~~~G~I~ri~~dG~-~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~-d~g~~~-~dei~~i~~  229 (354)
T 3a9g_A          153 GDAADPRLAQDLSSLAGKILRVDEEGR-PPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVAT-EHGPVG-HDEVNIILK  229 (354)
T ss_dssp             CCTTCGGGGTCTTCCSSEEEEECTTSC-CCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEE-ECCSSS-CCEEEEECT
T ss_pred             CCCCCCccccCCCCCCeEEEEEcCCCC-CCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEE-ecCCCC-CcEEEEecC
Confidence            321             33433333221 0       0011111123456899999 5654444 322211 001111111


Q ss_pred             CC------------------eeEEEecCCccEEEEEEe-------eCCCeEEEEecCCCeEEEEeCCCC-cee--ee-cc
Q 007283          135 GT------------------NVGEFDGHSRRVLSCAFK-------PSRPFRIATCGEDFLVNFYEGPPF-KFK--LS-HR  185 (609)
Q Consensus       135 ~~------------------~~~~~~~h~~~v~~~~~~-------p~~~~~i~t~~~d~~i~~~~~~~~-~~~--~~-~~  185 (609)
                      +.                  .+..+.........++|.       .++. .+++.-..+.|...+.... +..  .. +.
T Consensus       230 G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~  308 (354)
T 3a9g_A          230 GGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGW-LLIACLRGSMLAAVNFGDNMEVRKISTFFK  308 (354)
T ss_dssp             TCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTE-EEEEETTTTEEEEEEECGGGCEEEEEEECT
T ss_pred             CCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCc-EEEEEcCCCEEEEEEECCCCcccceeeecc
Confidence            11                  122221112346677773       3453 3555555555555554321 211  12 22


Q ss_pred             CcccceEEEEEcCCCCEEEEE
Q 007283          186 GHSNFVNCVRFSPDGSKFISV  206 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~  206 (609)
                      +....+..+++.|||.++++.
T Consensus       309 ~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          309 NVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             TTSCCEEEEEECTTSCEEEEE
T ss_pred             CCCCCeeEEEECCCCcEEEEE
Confidence            324467889999999766554

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=94.13  E-value=0.51  Score=46.00  Aligned_cols=98  Identities=16%  Similarity=0.263  Sum_probs=66.1

Q ss_pred             eEEeecCCCCeEEEeCCCEEEEEeCCCCccc------------cccc-c-----CCCCcEEEEECCCC---CEEEEEeCC
Q 007283           20 ILISGHPKSNSILYTNGRSVIILDLSNPLQV------------SIYG-E-----HAYPATVARFSPNG---EWIASADVS   78 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~------------~~~~-~-----h~~~v~~~~~sp~g---~~las~~~d   78 (609)
                      ..+..+|+|+.|+..+...+.|..+..+...            +.|. +     .+.+|..+.|+|-|   .-|+.--.|
T Consensus        69 ~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD  148 (452)
T 3pbp_A           69 FHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKED  148 (452)
T ss_dssp             CEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETT
T ss_pred             eEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecC
Confidence            3689999999999888889999988743211            1121 1     24679999999954   568888889


Q ss_pred             CcEEEEcCCCCc--e--eeEEEee-----cccceeEEEECCCCCEEEE
Q 007283           79 GTVRIWGAHNDH--V--LKKEFRV-----LSGRIDDLQWSPDGLRIVA  117 (609)
Q Consensus        79 ~~i~vWd~~~~~--~--~~~~~~~-----~~~~v~~~~~spdg~~l~~  117 (609)
                      ++||+||+....  .  +......     ....|.+++|+++|..|-+
T Consensus       149 ~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYv  196 (452)
T 3pbp_A          149 DTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYC  196 (452)
T ss_dssp             SCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEE
T ss_pred             CEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEE
Confidence            999999997522  1  1111111     1256788899987754443

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=93.99  E-value=1  Score=39.52  Aligned_cols=97  Identities=12%  Similarity=0.032  Sum_probs=56.1

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCc--------EEEEECCCCCEEEEEeCCCcEEEEcCCCCce-
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPA--------TVARFSPNGEWIASADVSGTVRIWGAHNDHV-   91 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v--------~~~~~sp~g~~las~~~d~~i~vWd~~~~~~-   91 (609)
                      .+++||+|...+. ....++-.+..+.....-+.. ...|        .++.|.|+|.+.|+  .||.|.=|+-.+... 
T Consensus        45 ~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s-~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~  120 (236)
T 1tl2_A           45 FLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGR-AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTD  120 (236)
T ss_dssp             EEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHH-CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTC
T ss_pred             eEEECCCccEEEE-eCCeEEEECCCCCCccccccc-ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCC
Confidence            7999999985554 334444444433111111111 2223        68899999999988  459887777643221 


Q ss_pred             --ee--EEE-eecccceeEEEECCCCCEEEEEECCC
Q 007283           92 --LK--KEF-RVLSGRIDDLQWSPDGLRIVACGDGK  122 (609)
Q Consensus        92 --~~--~~~-~~~~~~v~~~~~spdg~~l~~~~~~~  122 (609)
                        +.  ..+ +.-=..+..|.|.|+|...++. +++
T Consensus       121 ~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~  155 (236)
T 1tl2_A          121 NWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ  155 (236)
T ss_dssp             CHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred             ceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence              00  011 0011357999999999766665 543

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.92  E-value=1.6  Score=40.94  Aligned_cols=166  Identities=8%  Similarity=-0.025  Sum_probs=84.4

Q ss_pred             EeecCCCCeEEEeCC---------------CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe--CCCcEEEE
Q 007283           22 ISGHPKSNSILYTNG---------------RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD--VSGTVRIW   84 (609)
Q Consensus        22 ~~~~~~~~~l~~~~~---------------~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~--~d~~i~vW   84 (609)
                      -.++++|++|+|.+.               ..|+..++....... +..  +  ...+|+|+|++|+-.+  .++.-+|+
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~-l~~--~--~~~~~s~~g~~Iy~~~~~~~~~~~Iy  132 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV-LDP--D--PCIYASLIGNYIYYLHYDTQTATSLY  132 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE-EEC--S--CEEEEEEETTEEEEEEESSSSCEEEE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE-eec--C--CccEEEEeCCEEEEEeecCCCCceEE
Confidence            346789999999842               356677776655433 321  1  1237889999998665  45555555


Q ss_pred             cCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe
Q 007283           85 GAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC  164 (609)
Q Consensus        85 d~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~  164 (609)
                      ...........+..+  .+  .+|+|+|+.|.-+.++..  .+.....+.+.....+.+   ... ..++|++..++-+-
T Consensus       133 ~~~~dGs~~~~lt~~--~~--~~~~~~g~~iy~t~~g~~--~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~  202 (302)
T 3s25_A          133 RIRIDGEEKKKIKNH--YL--FTCNTSDRYFYYNNPKNG--QLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMD  202 (302)
T ss_dssp             EEETTSCCCEEEESS--CC--CCSEEETTEEEEECTTTC--CEEEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEE
T ss_pred             EEECCCCCeEEEeCC--Cc--eEeeEECCEEEEEeCCCc--eEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEE
Confidence            443222112223322  22  567889999998876332  344444443322222222   122 24568887654443


Q ss_pred             cCC-CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283          165 GED-FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS  207 (609)
Q Consensus       165 ~~d-~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  207 (609)
                      ..+ ..|..-+..... ...+..  ..+  ..|+|++++|.-+.
T Consensus       203 ~~~~~~I~~~~ldG~~-~~~Lt~--~~~--~~~~~~g~~Iy~~~  241 (302)
T 3s25_A          203 VNRDNAIVHVNINNPN-PVVLTE--ANI--EHYNVYGSLIFYQR  241 (302)
T ss_dssp             GGGTTEEEEECSSSCC-CEECSC--SCE--EEEEEETTEEEEEE
T ss_pred             cCCCcEEEEEECCCCC-eEEEeC--CCc--ceEEECCCEEEEEE
Confidence            222 233222222111 112211  122  34777888776553

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=93.57  E-value=5.2  Score=38.02  Aligned_cols=76  Identities=11%  Similarity=0.122  Sum_probs=45.7

Q ss_pred             eccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCC--e---eeeeEEE--ecCCCceEEEEE--CCCCC-EEEEEe-CC
Q 007283          444 INLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD--T---LTEEAVL--EKHRGAVSVIRY--SPDVS-MFASGD-VN  512 (609)
Q Consensus       444 ~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~--~---~~~~~~~--~~h~~~i~~v~~--s~~~~-~l~s~s-~d  512 (609)
                      +.....+..+++.+....|.++-+|.-  ||.+...  .   .......  ......+..|++  .++++ +++++| .+
T Consensus       176 f~lgsq~EgcvvDd~~g~Lyv~eEd~G--Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~  253 (355)
T 3amr_A          176 FKMNSQTEGMAADDEYGRLYIAEEDEA--IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGN  253 (355)
T ss_dssp             EECSSCEEEEEEETTTTEEEEEETTTE--EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGG
T ss_pred             ecCCCCcceEEEcCCCCeEEEecccce--EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCC
Confidence            333345667778888888999988855  5555422  1   1111111  122246777777  56666 555555 56


Q ss_pred             CeEEEEEcc
Q 007283          513 REAIVWDRV  521 (609)
Q Consensus       513 ~~v~iwd~~  521 (609)
                      .+..+||..
T Consensus       254 ~s~~Vydr~  262 (355)
T 3amr_A          254 SSYAIYDRQ  262 (355)
T ss_dssp             TEEEEEESS
T ss_pred             CEEEEEECC
Confidence            799999986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.56  E-value=4.7  Score=37.48  Aligned_cols=215  Identities=11%  Similarity=0.007  Sum_probs=94.3

Q ss_pred             CEEEEEeCCCCccccc--cccCCCCcEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCcee-eEEEeeccc---ceeE
Q 007283           37 RSVIILDLSNPLQVSI--YGEHAYPATVARFSPNGEWIASADVS-----GTVRIWGAHNDHVL-KKEFRVLSG---RIDD  105 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~--~~~h~~~v~~~~~sp~g~~las~~~d-----~~i~vWd~~~~~~~-~~~~~~~~~---~v~~  105 (609)
                      +.+.+||..+.+....  +...+..-.++.  -++++++.|+.+     ..+.++|..+.+.. -..+.....   ....
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~  108 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGA  108 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEE
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeE
Confidence            3677888877653221  111122222222  357777777654     36888888765410 111211111   1122


Q ss_pred             EEECCCCCEEEEEECCCCcceEEEEEcCCCCee----EEEecCCccEEEEEEeeCCCeEEEEecCC-----CeEEEEeCC
Q 007283          106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV----GEFDGHSRRVLSCAFKPSRPFRIATCGED-----FLVNFYEGP  176 (609)
Q Consensus       106 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~h~~~v~~~~~~p~~~~~i~t~~~d-----~~i~~~~~~  176 (609)
                      +.+  +++.++..|.......-.++.++.....    ..+......- ++.. -++ .+++.||.+     ..+..||..
T Consensus       109 ~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~d~~  183 (301)
T 2vpj_A          109 TTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGA-GLVV-ASG-VIYCLGGYDGLNILNSVEKYDPH  183 (301)
T ss_dssp             EEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSC-EEEE-ETT-EEEEECCBCSSCBCCCEEEEETT
T ss_pred             EEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccc-eEEE-ECC-EEEEECCCCCCcccceEEEEeCC
Confidence            222  5544444432222112223444432221    1111111111 1111 234 356667654     346777876


Q ss_pred             CCceeee--ccCcccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEE
Q 007283          177 PFKFKLS--HRGHSNFVNCVRFSPDGSKFISVSSD-----KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL  249 (609)
Q Consensus       177 ~~~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~  249 (609)
                      +.+....  +......-.++.+  ++.+++.|+.+     ..+.+||..+.+-. .+............+.+  +++.++
T Consensus       184 ~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~~~~~~~--~~~i~v  258 (301)
T 2vpj_A          184 TGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWT-TVTSMTTPRCYVGATVL--RGRLYA  258 (301)
T ss_dssp             TTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEEE--TTEEEE
T ss_pred             CCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEE-ECCCCCCcccceeEEEE--CCEEEE
Confidence            6554332  1111111222222  56677777654     46888998765422 22111111111122222  566777


Q ss_pred             EEeCC-----CcEEEeecc
Q 007283          250 TASAD-----KSAKVWDIS  263 (609)
Q Consensus       250 s~s~d-----~~i~iwd~~  263 (609)
                      .|+.+     ..+.+||+.
T Consensus       259 ~GG~~~~~~~~~v~~yd~~  277 (301)
T 2vpj_A          259 IAGYDGNSLLSSIECYDPI  277 (301)
T ss_dssp             ECCBCSSSBEEEEEEEETT
T ss_pred             EcCcCCCcccccEEEEcCC
Confidence            77655     345666665

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=92.37  E-value=8.9  Score=43.69  Aligned_cols=235  Identities=10%  Similarity=0.074  Sum_probs=126.6

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEE-CCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARF-SPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL   99 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~-sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~   99 (609)
                      .+.-||..+.|+--+|..+.||++++...+..+.- ..+|.-=+| +|+-=-|+|   +..|.-|++.........|.-|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis~~~l~lVT---~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLNTVALVT---DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecCCCeeEEEc---CCeEEEeccCCCCccHHHHhcc
Confidence            45578999988888899999999977655443332 234555454 343322333   3569999986422111112222


Q ss_pred             ----ccceeEEEECCCCCEEEEEE----CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEe--eCCCeEEEEec---C
Q 007283          100 ----SGRIDDLQWSPDGLRIVACG----DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFK--PSRPFRIATCG---E  166 (609)
Q Consensus       100 ----~~~v~~~~~spdg~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~~i~t~~---~  166 (609)
                          +..|...+-++|.++++.+|    ++.-...+.++..+.+.. ..+.||......+...  +....+++-+.   .
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~  224 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCC
Confidence                45688889999999999887    233333455555544321 1234554333222221  11111222111   1


Q ss_pred             CCeEEEEeCCC---Cceee------eccC---cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCcc
Q 007283          167 DFLVNFYEGPP---FKFKL------SHRG---HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKG  234 (609)
Q Consensus       167 d~~i~~~~~~~---~~~~~------~~~~---h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~  234 (609)
                      .+.+.+-++..   +...+      .+..   -.+.-.++..++.-..+...+.-|.+.+||..++.++..-..   ...
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ri---s~~  301 (1630)
T 1xi4_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGE  301 (1630)
T ss_pred             CceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccc---cCC
Confidence            13455554321   11110      0111   123334677777766777888999999999999988764321   223


Q ss_pred             ceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          235 SVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       235 ~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .|.-.+-++...-++.....|.|.--.++
T Consensus       302 ~iF~~~~~~~~~g~~~vnr~G~vl~v~v~  330 (1630)
T 1xi4_A          302 TIFVTAPHEATAGIIGVNRKGQVLSVCVE  330 (1630)
T ss_pred             ceEEeccCCCCCceEEEcCCceEEEEEEc
Confidence            44444444433345555566665554443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=92.09  E-value=4.2  Score=37.84  Aligned_cols=144  Identities=13%  Similarity=0.168  Sum_probs=73.5

Q ss_pred             CCCEEEEEeCCC-----cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC-----CeEEEEEccCCceEE
Q 007283          458 DGSEAIIGSQDG-----KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN-----REAIVWDRVSREVKL  527 (609)
Q Consensus       458 ~g~~l~~gs~dg-----~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d-----~~v~iwd~~~~~~~~  527 (609)
                      +++.++.|+.++     .+.+||..++.......+......-.++.+  ++++++.|+.+     ..+.+||..+.+...
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            566666666543     577888776654332222211111222222  67788887765     458889987766543


Q ss_pred             ee-ecCCCCceEEEEECCCCcEEEEEeCC-----CeEEEEEcCCCCCcceeEeccccCCe-EEEEEcCCCeEEEEeCCC-
Q 007283          528 KN-MLYHTARINCLAWSPNNSMVATGSLD-----TCVIIYEIDKPASSRMTIKGAHLGGV-YGLAFTDEHSVVSSGEDA-  599 (609)
Q Consensus       528 ~~-~~~h~~~i~~l~~s~d~~~l~s~s~D-----~~v~vw~~~~~~~~~~~~~~~h~~~v-~~~~~s~~~~l~s~s~D~-  599 (609)
                      .. +........++.+  ++++++.|+.+     ..+.+||..+..-..+.  .....+. .++...+++.++.||.++ 
T Consensus       190 ~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~  265 (301)
T 2vpj_A          190 VTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT--SMTTPRCYVGATVLRGRLYAIAGYDGN  265 (301)
T ss_dssp             ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC--CCSSCCBSCEEEEETTEEEEECCBCSS
T ss_pred             CCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECC--CCCCcccceeEEEECCEEEEEcCcCCC
Confidence            21 1111111223333  67888888765     46888887653211111  1111111 122233667777777653 


Q ss_pred             ----cEEEEEcc
Q 007283          600 ----CVRVWRLT  607 (609)
Q Consensus       600 ----~i~~W~~~  607 (609)
                          .+.++|+.
T Consensus       266 ~~~~~v~~yd~~  277 (301)
T 2vpj_A          266 SLLSSIECYDPI  277 (301)
T ss_dssp             SBEEEEEEEETT
T ss_pred             cccccEEEEcCC
Confidence                45555553

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=91.16  E-value=4.1  Score=38.02  Aligned_cols=145  Identities=12%  Similarity=0.123  Sum_probs=72.3

Q ss_pred             CCCEEEEEeCC------CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeC---------CCeEEEEEccC
Q 007283          458 DGSEAIIGSQD------GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV---------NREAIVWDRVS  522 (609)
Q Consensus       458 ~g~~l~~gs~d------g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~---------d~~v~iwd~~~  522 (609)
                      +++.++.|+.+      ..+.+||..++.......+......-.++.  -++++++.|+.         -..+.+||..+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            56667777655      458888877665432211111111112222  26677777764         34578899887


Q ss_pred             CceEEeeecC-CCCceEEEEECCCCcEEEEEeCC-----CeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEe
Q 007283          523 REVKLKNMLY-HTARINCLAWSPNNSMVATGSLD-----TCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSG  596 (609)
Q Consensus       523 ~~~~~~~~~~-h~~~i~~l~~s~d~~~l~s~s~D-----~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s  596 (609)
                      .......... ....-.++.+  ++++++.|+.+     ..+.+||..+..-..+.... ....-.++...++..++.||
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG  255 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP-WKGVTVKCAAVGSIVYVLAG  255 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCS-CCBSCCEEEEETTEEEEEEC
T ss_pred             CeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCC-CCccceeEEEECCEEEEEeC
Confidence            7654321111 1111222223  67777777654     35788887653211111111 11111223333667777788


Q ss_pred             CC-----CcEEEEEcc
Q 007283          597 ED-----ACVRVWRLT  607 (609)
Q Consensus       597 ~D-----~~i~~W~~~  607 (609)
                      .+     ..+..+|+.
T Consensus       256 ~~~~~~~~~~~~yd~~  271 (306)
T 3ii7_A          256 FQGVGRLGHILEYNTE  271 (306)
T ss_dssp             BCSSSBCCEEEEEETT
T ss_pred             cCCCeeeeeEEEEcCC
Confidence            54     345666654

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=90.71  E-value=4.2  Score=39.07  Aligned_cols=102  Identities=17%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeee-eE----EEecCCCceEEEEECCC----CCEEEEEeC-------CC
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE-EA----VLEKHRGAVSVIRYSPD----VSMFASGDV-------NR  513 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~-~~----~~~~h~~~i~~v~~s~~----~~~l~s~s~-------d~  513 (609)
                      ...+++.|+|+++.++...|.|++++.. +.... ..    +...-.+....|+++|+    +.+.++-..       ..
T Consensus        20 P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~~   98 (353)
T 2g8s_A           20 PWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAGT   98 (353)
T ss_dssp             EEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEEE
T ss_pred             cEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCcee
Confidence            5778999999933445567999888743 22210 00    11112346789999995    555555332       23


Q ss_pred             eEEEEEccCCc--e-----EEeeec---CCCCceEEEEECCCCcEEEEE
Q 007283          514 EAIVWDRVSRE--V-----KLKNML---YHTARINCLAWSPNNSMVATG  552 (609)
Q Consensus       514 ~v~iwd~~~~~--~-----~~~~~~---~h~~~i~~l~~s~d~~~l~s~  552 (609)
                      .|..|+.....  .     .+..+.   .....-..++|.|||.++++-
T Consensus        99 ~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~  147 (353)
T 2g8s_A           99 AVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL  147 (353)
T ss_dssp             EEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred             EEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence            45555543221  1     111111   111224679999999766654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=90.69  E-value=10  Score=35.06  Aligned_cols=213  Identities=14%  Similarity=0.108  Sum_probs=95.4

Q ss_pred             CEEEEEeCCCCccccc--cccCCCCcEEEEECCCCCEEEEEeCC-----CcEEEEcCCCCceeeEEEeeccc---ceeEE
Q 007283           37 RSVIILDLSNPLQVSI--YGEHAYPATVARFSPNGEWIASADVS-----GTVRIWGAHNDHVLKKEFRVLSG---RIDDL  106 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~--~~~h~~~v~~~~~sp~g~~las~~~d-----~~i~vWd~~~~~~~~~~~~~~~~---~v~~~  106 (609)
                      +.+.+||..+......  +...+..-..+.+  ++++++.|+.+     .++.++|..+.+-  ..+.....   ....+
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~  105 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQW--TSVANMRDRRSTLGAA  105 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEE
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCce--eeCCCCCccccceEEE
Confidence            4577888876653221  1111111222222  67777777654     3577888776541  11221111   12222


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEE----ecCCccEEEEEEeeCCCeEEEEecCC-------CeEEEEeC
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEF----DGHSRRVLSCAFKPSRPFRIATCGED-------FLVNFYEG  175 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~~i~t~~~d-------~~i~~~~~  175 (609)
                      .+  +++.++..|.+.....-.++.++........    ......- +++. -++ .+++.||.+       ..+..||.
T Consensus       106 ~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~yd~  180 (302)
T 2xn4_A          106 VL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSV-GVGV-VGG-LLYAVGGYDVASRQCLSTVECYNA  180 (302)
T ss_dssp             EE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETT-EEEEECCEETTTTEECCCEEEEET
T ss_pred             EE--CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCc-eEEE-ECC-EEEEEeCCCCCCCccccEEEEEeC
Confidence            22  5555555553333323345555543322211    1111111 1121 233 356666543       23667787


Q ss_pred             CCCceeee--ccCcccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeE
Q 007283          176 PPFKFKLS--HRGHSNFVNCVRFSPDGSKFISVSSD-----KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV  248 (609)
Q Consensus       176 ~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l  248 (609)
                      .+.+....  +........++.+  ++.+++.|+.+     ..+.+||..+.+-. .+............+.  -+++.+
T Consensus       181 ~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~r~~~~~~~--~~~~i~  255 (302)
T 2xn4_A          181 TTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWR-QVADMNMCRRNAGVCA--VNGLLY  255 (302)
T ss_dssp             TTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEE--ETTEEE
T ss_pred             CCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEe-eCCCCCCccccCeEEE--ECCEEE
Confidence            66544322  2111111222222  56777777654     36888998765422 2211111111111222  256677


Q ss_pred             EEEeCCC-----cEEEeecc
Q 007283          249 LTASADK-----SAKVWDIS  263 (609)
Q Consensus       249 ~s~s~d~-----~i~iwd~~  263 (609)
                      +.|+.++     .+.+||+.
T Consensus       256 v~GG~~~~~~~~~v~~yd~~  275 (302)
T 2xn4_A          256 VVGGDDGSCNLASVEYYNPT  275 (302)
T ss_dssp             EECCBCSSSBCCCEEEEETT
T ss_pred             EECCcCCCcccccEEEEcCC
Confidence            7776543     36777765

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.96  E-value=6.6  Score=36.48  Aligned_cols=145  Identities=19%  Similarity=0.237  Sum_probs=72.1

Q ss_pred             CCCEEEEEeCCC-----cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC-------CeEEEEEccCCce
Q 007283          458 DGSEAIIGSQDG-----KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN-------REAIVWDRVSREV  525 (609)
Q Consensus       458 ~g~~l~~gs~dg-----~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d-------~~v~iwd~~~~~~  525 (609)
                      +++.++.|+.++     .+.+||..++.......+......-.++.+  ++++++.|+.+       ..+.+||..+...
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            566667776553     467777766554322212111111122222  66777777643       3578899877665


Q ss_pred             EEee-ecCCCCceEEEEECCCCcEEEEEeCCC-----eEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCC
Q 007283          526 KLKN-MLYHTARINCLAWSPNNSMVATGSLDT-----CVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDA  599 (609)
Q Consensus       526 ~~~~-~~~h~~~i~~l~~s~d~~~l~s~s~D~-----~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~  599 (609)
                      .... +........++.+  ++++++.|+.++     .+.+||..+..-..+.... ....-.++...++..++-||.++
T Consensus       186 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~i~v~GG~~~  262 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMN-MCRRNAGVCAVNGLLYVVGGDDG  262 (302)
T ss_dssp             EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCS
T ss_pred             EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCC-CccccCeEEEECCEEEEECCcCC
Confidence            4321 1111111222333  678888887653     6888887653211111000 11111123333667777777654


Q ss_pred             -----cEEEEEcc
Q 007283          600 -----CVRVWRLT  607 (609)
Q Consensus       600 -----~i~~W~~~  607 (609)
                           .+.++|+.
T Consensus       263 ~~~~~~v~~yd~~  275 (302)
T 2xn4_A          263 SCNLASVEYYNPT  275 (302)
T ss_dssp             SSBCCCEEEEETT
T ss_pred             CcccccEEEEcCC
Confidence                 36666654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=89.39  E-value=25  Score=40.24  Aligned_cols=215  Identities=15%  Similarity=0.206  Sum_probs=120.6

Q ss_pred             CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEE
Q 007283           36 GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI  115 (609)
Q Consensus        36 ~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l  115 (609)
                      +..++|.|+.++..+..-   .=.--+...+|..+.||--. ..+++|++++++..++. + ...++|..=.|-.+. .|
T Consensus        47 ~~~vvIidl~~~~~~~rr---pi~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks-~-~~~e~VvfWkWis~~-~l  119 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR---PISADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKA-H-TMTDDVTFWKWISLN-TV  119 (1630)
T ss_pred             CceEEEEECCCCCCcccc---cccchhhccCCCcceEEEec-CCeEEEeehHHhhhhcc-c-ccCCCceEEEecCCC-ee
Confidence            358999999987765321   11123456899999888653 78999999998764442 2 234566666666554 44


Q ss_pred             EEEECCCCcceEEEEEcCCC---CeeEEEecC----CccEEEEEEeeCCCeEEEEec------CCCeEEEEeCCCCceee
Q 007283          116 VACGDGKGKSLVRAFMWDSG---TNVGEFDGH----SRRVLSCAFKPSRPFRIATCG------EDFLVNFYEGPPFKFKL  182 (609)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~h----~~~v~~~~~~p~~~~~i~t~~------~d~~i~~~~~~~~~~~~  182 (609)
                      +.+++.      .++-|+..   .+...|..|    ...|..-..+++..+.+++|=      -.|.+.+|..+. +..+
T Consensus       120 ~lVT~~------aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ  192 (1630)
T 1xi4_A          120 ALVTDN------AVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQ  192 (1630)
T ss_pred             EEEcCC------eEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccch
Confidence            444432      25666642   233344444    345666677888887666652      236788887653 2334


Q ss_pred             eccCcccceEEEEEc---CCCCEEEEEeC---CCcEEEEeCCCC-cccccc--------CcCCCCccceEEEEECCCCCe
Q 007283          183 SHRGHSNFVNCVRFS---PDGSKFISVSS---DKKGIIYDGKTA-DKIGEL--------SPEDGHKGSVYAVSWSPDGKQ  247 (609)
Q Consensus       183 ~~~~h~~~v~~l~~s---~dg~~l~s~~~---d~~i~iwd~~~~-~~~~~~--------~~~~~h~~~V~~l~~spd~~~  247 (609)
                      .+.||......+...   +....++.+..   .+.+.|-++... .....+        .+......-=.++..++.-..
T Consensus       193 ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~  272 (1630)
T 1xi4_A          193 PIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDV  272 (1630)
T ss_pred             hhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCE
Confidence            455665443333321   11223333322   256666665332 100011        001111222345666666667


Q ss_pred             EEEEeCCCcEEEeeccc
Q 007283          248 VLTASADKSAKVWDISE  264 (609)
Q Consensus       248 l~s~s~d~~i~iwd~~~  264 (609)
                      +...+.-|.+.++|+.+
T Consensus       273 iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          273 VFLITKYGYIHLYDLET  289 (1630)
T ss_pred             EEEEecCceEEEEeccc
Confidence            77788889999999874

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=89.14  E-value=6.2  Score=36.83  Aligned_cols=145  Identities=18%  Similarity=0.226  Sum_probs=71.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC-----CeEEEEEccCCceEE
Q 007283          458 DGSEAIIGSQD-----GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN-----REAIVWDRVSREVKL  527 (609)
Q Consensus       458 ~g~~l~~gs~d-----g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d-----~~v~iwd~~~~~~~~  527 (609)
                      +++.++.|+.+     ..+.+||..++.......+......-.++.+  ++.+++.|+.+     ..+.+||..+.+...
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            45556665543     3577888766654322111111111222223  67777877764     458889987765532


Q ss_pred             ee-ecCCCCceEEEEECCCCcEEEEEeCC-----CeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCC--
Q 007283          528 KN-MLYHTARINCLAWSPNNSMVATGSLD-----TCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDA--  599 (609)
Q Consensus       528 ~~-~~~h~~~i~~l~~s~d~~~l~s~s~D-----~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~--  599 (609)
                      .. +......-.++.+  ++++++.|+.+     ..+.+||+....-..+.... ....-.++...+++.++-||.++  
T Consensus       199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~  275 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMK-HRRSALGITVHQGRIYVLGGYDGHT  275 (308)
T ss_dssp             CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEECCBCSSC
T ss_pred             CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCC-CCccceEEEEECCEEEEEcCcCCCc
Confidence            21 1111111223333  77888888765     45888887653211111001 11111233334667777777543  


Q ss_pred             ---cEEEEEcc
Q 007283          600 ---CVRVWRLT  607 (609)
Q Consensus       600 ---~i~~W~~~  607 (609)
                         .+.++|+.
T Consensus       276 ~~~~v~~yd~~  286 (308)
T 1zgk_A          276 FLDSVECYDPD  286 (308)
T ss_dssp             BCCEEEEEETT
T ss_pred             ccceEEEEcCC
Confidence               34555553

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.97  E-value=20  Score=35.78  Aligned_cols=105  Identities=16%  Similarity=0.172  Sum_probs=60.9

Q ss_pred             ceeEEeecCCCC--eEEEeCCCEEEEEeCCCCcc---cc----cc-cc----CCCCcEEEEECCC----CCEEEEEe--C
Q 007283           18 RGILISGHPKSN--SILYTNGRSVIILDLSNPLQ---VS----IY-GE----HAYPATVARFSPN----GEWIASAD--V   77 (609)
Q Consensus        18 ~~~~~~~~~~~~--~l~~~~~~~~~i~~~~~~~~---~~----~~-~~----h~~~v~~~~~sp~----g~~las~~--~   77 (609)
                      .|..+++.|||.  .+|.-..+.|++++......   +.    .+ .+    ..+....++|+|+    |.+.++-+  .
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            567899999996  77777667888887532211   11    11 11    1345788999996    55444322  1


Q ss_pred             CC--------cEEE--EcCCC----------CceeeEEE-eecccceeEEEECCCCCEEEEEECCC
Q 007283           78 SG--------TVRI--WGAHN----------DHVLKKEF-RVLSGRIDDLQWSPDGLRIVACGDGK  122 (609)
Q Consensus        78 d~--------~i~v--Wd~~~----------~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~~~  122 (609)
                      ++        ..+|  |.+..          .+.+.... ......-..|+|.|||...+++||..
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence            11        1333  44321          11222111 11234567899999999999999764

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=88.21  E-value=6  Score=36.93  Aligned_cols=134  Identities=16%  Similarity=0.197  Sum_probs=64.4

Q ss_pred             CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC-----CeEEEEEccCCceEEee-ecCCCCceEEEEE
Q 007283          469 GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN-----REAIVWDRVSREVKLKN-MLYHTARINCLAW  542 (609)
Q Consensus       469 g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d-----~~v~iwd~~~~~~~~~~-~~~h~~~i~~l~~  542 (609)
                      ..+.+||..++.......+......-.++.+  ++++++.|+.+     ..+.+||..+.+..... +......-.++.+
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~  167 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL  167 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE
T ss_pred             ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE
Confidence            4577787766554322212111111222222  67777777643     35788888776543221 1111111223333


Q ss_pred             CCCCcEEEEEeCC-----CeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCC-----CcEEEEEcc
Q 007283          543 SPNNSMVATGSLD-----TCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGED-----ACVRVWRLT  607 (609)
Q Consensus       543 s~d~~~l~s~s~D-----~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D-----~~i~~W~~~  607 (609)
                        ++++++.|+.+     ..+.+||.....-..+.... ..+.-.++...++..++-||.+     ..+.++|+.
T Consensus       168 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~  239 (308)
T 1zgk_A          168 --NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMN-TIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVE  239 (308)
T ss_dssp             --TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETT
T ss_pred             --CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCC-CccccceEEEECCEEEEEeCCCCCCccceEEEEeCC
Confidence              67888877765     45788887643211111111 1111112223366677777765     346666654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=87.37  E-value=18  Score=33.45  Aligned_cols=214  Identities=10%  Similarity=-0.059  Sum_probs=95.4

Q ss_pred             CEEEEEeCCCCccccc--cccCCCCcEEEEECCCCCEEEEEeCC----CcEEEEcCCCCceeeEEEeeccc---ceeEEE
Q 007283           37 RSVIILDLSNPLQVSI--YGEHAYPATVARFSPNGEWIASADVS----GTVRIWGAHNDHVLKKEFRVLSG---RIDDLQ  107 (609)
Q Consensus        37 ~~~~i~~~~~~~~~~~--~~~h~~~v~~~~~sp~g~~las~~~d----~~i~vWd~~~~~~~~~~~~~~~~---~v~~~~  107 (609)
                      +.+.+||..+.+....  +...+..-.++.  -++++++.|+.+    .++.++|..+.+-  ..+.....   ....+.
T Consensus        24 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~   99 (306)
T 3ii7_A           24 QSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSW--YSKLGPPTPRDSLAACA   99 (306)
T ss_dssp             TSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEE--EEEECCSSCCBSCEEEE
T ss_pred             ceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeE--EECCCCCccccceeEEE
Confidence            4788888877654321  111122222333  367777777654    5677788776541  11221111   122222


Q ss_pred             ECCCCCEEEEEECC-CCcceEEEEEcCCCCeeEEE----ecCCccEEEEEEeeCCCeEEEEecCC---------CeEEEE
Q 007283          108 WSPDGLRIVACGDG-KGKSLVRAFMWDSGTNVGEF----DGHSRRVLSCAFKPSRPFRIATCGED---------FLVNFY  173 (609)
Q Consensus       108 ~spdg~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~h~~~v~~~~~~p~~~~~i~t~~~d---------~~i~~~  173 (609)
                      +  +++.++..|.+ .....-.++.++........    ......- ++.. -++ .+++.||.+         ..+..|
T Consensus       100 ~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~~~-~iyv~GG~~~~~~~~~~~~~~~~y  174 (306)
T 3ii7_A          100 A--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSH-GMVE-ANG-LIYVCGGSLGNNVSGRVLNSCEVY  174 (306)
T ss_dssp             E--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSC-EEEE-ETT-EEEEECCEESCTTTCEECCCEEEE
T ss_pred             E--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCccee-EEEE-ECC-EEEEECCCCCCCCcccccceEEEe
Confidence            2  55444444422 11111123333332221111    1111111 1111 233 346666532         336677


Q ss_pred             eCCCCceeee--ccCcccceEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC
Q 007283          174 EGPPFKFKLS--HRGHSNFVNCVRFSPDGSKFISVSSD-----KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK  246 (609)
Q Consensus       174 ~~~~~~~~~~--~~~h~~~v~~l~~s~dg~~l~s~~~d-----~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~  246 (609)
                      |..+.+....  +......-..+.+  ++++++.|+.+     ..+.+||..+.+- ..+............+.+  +++
T Consensus       175 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~  249 (306)
T 3ii7_A          175 DPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEW-KMVSPMPWKGVTVKCAAV--GSI  249 (306)
T ss_dssp             ETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEE-EECCCCSCCBSCCEEEEE--TTE
T ss_pred             CCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcE-EECCCCCCCccceeEEEE--CCE
Confidence            7766544332  1111111222222  66677777653     3578888876542 222111111111222333  667


Q ss_pred             eEEEEeCC-----CcEEEeeccc
Q 007283          247 QVLTASAD-----KSAKVWDISE  264 (609)
Q Consensus       247 ~l~s~s~d-----~~i~iwd~~~  264 (609)
                      +++.|+.+     ..+..||+..
T Consensus       250 i~v~GG~~~~~~~~~~~~yd~~~  272 (306)
T 3ii7_A          250 VYVLAGFQGVGRLGHILEYNTET  272 (306)
T ss_dssp             EEEEECBCSSSBCCEEEEEETTT
T ss_pred             EEEEeCcCCCeeeeeEEEEcCCC
Confidence            77777754     4577888764

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=84.72  E-value=19  Score=33.60  Aligned_cols=139  Identities=12%  Similarity=0.164  Sum_probs=64.9

Q ss_pred             EcCCCCEEEEEeC----CC-------cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCC-------CeEE
Q 007283          455 IAPDGSEAIIGSQ----DG-------KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN-------REAI  516 (609)
Q Consensus       455 ~sp~g~~l~~gs~----dg-------~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d-------~~v~  516 (609)
                      +..++..++.|+.    ++       .+..||..+........+......-.++.+  ++.+++.|+.+       ..+.
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence            3456777777763    12       166677665543322111111111122222  67777777754       3577


Q ss_pred             EEEccCCceEEee-ecCCCCceEEEEECCCCcEEEEEeCC------CeEEEEEcCCCCCcceeEeccccCCeEEEEEcCC
Q 007283          517 VWDRVSREVKLKN-MLYHTARINCLAWSPNNSMVATGSLD------TCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDE  589 (609)
Q Consensus       517 iwd~~~~~~~~~~-~~~h~~~i~~l~~s~d~~~l~s~s~D------~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~  589 (609)
                      +||..+.+..... +......-.++.  .++++++.|+.+      ..+.+||..+..-..+.... ....-.++...++
T Consensus       131 ~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~  207 (318)
T 2woz_A          131 CYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK-TPRSMFGVAIHKG  207 (318)
T ss_dssp             EEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETT
T ss_pred             EEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCC-CCcccceEEEECC
Confidence            8888776554221 110001111222  477777777642      35888887653211111111 1111122333366


Q ss_pred             CeEEEEeCC
Q 007283          590 HSVVSSGED  598 (609)
Q Consensus       590 ~~l~s~s~D  598 (609)
                      ..++.||.+
T Consensus       208 ~iyv~GG~~  216 (318)
T 2woz_A          208 KIVIAGGVT  216 (318)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEcCcC
Confidence            777777754

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=84.36  E-value=16  Score=38.80  Aligned_cols=109  Identities=15%  Similarity=0.204  Sum_probs=62.0

Q ss_pred             CCCEEEEEeCCC------cEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCC--eEEEEEccCCceEEee
Q 007283          458 DGSEAIIGSQDG------KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNR--EAIVWDRVSREVKLKN  529 (609)
Q Consensus       458 ~g~~l~~gs~dg------~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~--~v~iwd~~~~~~~~~~  529 (609)
                      +++.++.|+.++      .+.+||..++.......+...... .+...-.++.+++.|+.++  .+.+||..+.......
T Consensus       451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~  529 (695)
T 2zwa_A          451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVT  529 (695)
T ss_dssp             TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECC
T ss_pred             CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEcc
Confidence            777888887543      477888776554322111111111 1222224888888888655  6899998877654322


Q ss_pred             e----cCCCCceEEEEECCC-CcEEEEEeC--C-----CeEEEEEcCCCC
Q 007283          530 M----LYHTARINCLAWSPN-NSMVATGSL--D-----TCVIIYEIDKPA  567 (609)
Q Consensus       530 ~----~~h~~~i~~l~~s~d-~~~l~s~s~--D-----~~v~vw~~~~~~  567 (609)
                      .    ......-.++.+..+ +++++.|+.  +     ..+.+||+....
T Consensus       530 ~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          530 PKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             CSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             CCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence            1    111122234555555 777777766  2     458888886543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=82.06  E-value=12  Score=37.89  Aligned_cols=75  Identities=11%  Similarity=0.084  Sum_probs=50.8

Q ss_pred             CceeEEEEcCCCCEEEEEeC-CCcEEEEEecCC------ee-eee--EEEe-cCCCceEEEEECCCCCEEEEEeCCCeEE
Q 007283          448 FPVTASAIAPDGSEAIIGSQ-DGKLRVYSIRGD------TL-TEE--AVLE-KHRGAVSVIRYSPDVSMFASGDVNREAI  516 (609)
Q Consensus       448 ~~~~~~~~sp~g~~l~~gs~-dg~i~iw~~~~~------~~-~~~--~~~~-~h~~~i~~v~~s~~~~~l~s~s~d~~v~  516 (609)
                      .....+.++|||++++++++ +.++.+++++.-      .+ ..+  ..-+ .-.-...-.+|.++|....|-..|..|-
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvv  402 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVV  402 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEE
Confidence            33455778999999877655 789999998631      11 000  0101 1123456788999997777888999999


Q ss_pred             EEEccC
Q 007283          517 VWDRVS  522 (609)
Q Consensus       517 iwd~~~  522 (609)
                      .|++..
T Consensus       403 kWni~~  408 (638)
T 3sbq_A          403 KWNMEE  408 (638)
T ss_dssp             EEEHHH
T ss_pred             EEeccH
Confidence            999754

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=81.95  E-value=17  Score=34.61  Aligned_cols=96  Identities=9%  Similarity=0.056  Sum_probs=47.5

Q ss_pred             CCCEEEEEeCC-CcEEEEEecC--CeeeeeEEEe-cCCCceEEEEECCCCCEEEEEeC-C---------CeEEEEEccCC
Q 007283          458 DGSEAIIGSQD-GKLRVYSIRG--DTLTEEAVLE-KHRGAVSVIRYSPDVSMFASGDV-N---------REAIVWDRVSR  523 (609)
Q Consensus       458 ~g~~l~~gs~d-g~i~iw~~~~--~~~~~~~~~~-~h~~~i~~v~~s~~~~~l~s~s~-d---------~~v~iwd~~~~  523 (609)
                      ++..++.|+.+ ..+..||...  ........+. .....-.++.+  ++.+++.|+. +         ..+.+||..+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            56666776544 4677777753  2222111111 01111122222  6777777776 2         45788998777


Q ss_pred             ceEEeeecCCCCceEEEEECCCCcEEEEEeCC
Q 007283          524 EVKLKNMLYHTARINCLAWSPNNSMVATGSLD  555 (609)
Q Consensus       524 ~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D  555 (609)
                      +................+...++++++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            65432111111121111122478888888765

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=81.19  E-value=37  Score=36.01  Aligned_cols=109  Identities=14%  Similarity=0.263  Sum_probs=61.0

Q ss_pred             CCCCEEEEEeCC----CcEEEEEecCCeeeeeE-E-----EecCCCceEEEEECCCCCEEEEEeCCC------eEEEEEc
Q 007283          457 PDGSEAIIGSQD----GKLRVYSIRGDTLTEEA-V-----LEKHRGAVSVIRYSPDVSMFASGDVNR------EAIVWDR  520 (609)
Q Consensus       457 p~g~~l~~gs~d----g~i~iw~~~~~~~~~~~-~-----~~~h~~~i~~v~~s~~~~~l~s~s~d~------~v~iwd~  520 (609)
                      .++..++.|+.+    ..+.+||..++...... .     +......-.++.++.++..++.|+.++      .+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            567788888754    46888888776543222 1     111111223333433788888887543      4778888


Q ss_pred             cCCceEEeeecCCCCce-EEEEECCCCcEEEEEeCCC--eEEEEEcCCC
Q 007283          521 VSREVKLKNMLYHTARI-NCLAWSPNNSMVATGSLDT--CVIIYEIDKP  566 (609)
Q Consensus       521 ~~~~~~~~~~~~h~~~i-~~l~~s~d~~~l~s~s~D~--~v~vw~~~~~  566 (609)
                      .+......... ..... .+++.-.++++++.|+.++  .+.+||..+.
T Consensus       476 ~t~~W~~~~~~-p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          476 KTREWSMIKSL-SHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE  523 (695)
T ss_dssp             TTTEEEECCCC-SBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred             CCCcEEECCCC-CCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence            77655322111 11111 1223324788888887665  6888887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	609
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-32
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	1e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-04
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-30
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	0.003
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-26
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	8e-25
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-22
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-20
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-17
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-08
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	6e-06
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-04
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-21
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-17
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-13
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-19
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-17
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-21
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	2e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	6e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-16
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	5e-13
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	9e-16
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	6e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	7e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-14
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	8e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	1e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-14
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-07
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	9e-05
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-14
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-12
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	8e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	9e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-09
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	4e-08
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-14
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	4e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-04
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-13
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	6e-11
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	9e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.003
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-11
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-09
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-08
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-12
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	1e-07
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-10
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	5e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	4e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-06
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	5e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	1e-05
d2hqsa1	269	b.68.4.1 (A:163-431) TolB, C-terminal domain {Esch	2e-06
d1k32a2	281	b.68.7.1 (A:39-319) Tricorn protease N-terminal do	7e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.002
d2bgra1	470	b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26,	0.004

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score =  125 bits (312), Expect = 2e-32
 Identities = 102/307 (33%), Positives = 159/307 (51%), Gaps = 9/307 (2%)

Query: 6   ETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARF 65
             +  +P T RG  +++   P  + I Y NG SV  + + +     IY EH++  TVA+ 
Sbjct: 7   ALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKT 66

Query: 66  SPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKS 125
           SP+G + AS DV G VRIW       + K    +              + +A      + 
Sbjct: 67  SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER 126

Query: 126 LVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHR 185
               F++D+GT+ G   G +R + S  FKPSRPFRI +  +D  V  +EGPPFKFK +  
Sbjct: 127 FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFG 186

Query: 186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED----GHKGSVYAVSW 241
            H+ FV+ VR++PDGS F S   D   ++Y+G    K G    +      H GSV+ ++W
Sbjct: 187 EHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTW 246

Query: 242 SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL 301
           SPDG ++ +ASADK+ K+W+++     K++KT+       ++D  +G +W    LV +S 
Sbjct: 247 SPDGTKIASASADKTIKIWNVAT---LKVEKTI--PVGTRIEDQQLGIIWTKQALVSISA 301

Query: 302 GGTISIF 308
            G I+  
Sbjct: 302 NGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.6 bits (137), Expect = 1e-09
 Identities = 33/299 (11%), Positives = 70/299 (23%), Gaps = 16/299 (5%)

Query: 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
           RG       +  +P G K     +          +       +    H         SP 
Sbjct: 17  RGT---AVVLGNTPAGDKIQY-CNGTSVYTVPVGSLTDTEIYT---EHSHQTTVAKTSPS 69

Query: 245 GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT 304
           G    +     + ++WD ++  H         SG                        G 
Sbjct: 70  GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGH 129

Query: 305 ISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR 364
           + +F       +    +  M +V                +   +                
Sbjct: 130 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHT 189

Query: 365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG-----YANSIDIGSQPKDLSVALH 419
           K    ++          T G    +    + G + G        ++        L+ +  
Sbjct: 190 KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 249

Query: 420 YPELVLVSTDSGVVL--LRGAEVVSTINL--RFPVTASAIAPDGSEAIIGSQDGKLRVY 474
             ++   S D  + +  +   +V  TI +  R       I       +  S +G +   
Sbjct: 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.6 bits (124), Expect = 6e-08
 Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 2/92 (2%)

Query: 491 RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVA 550
           RG   V+  +P        +          V      +    H+ +      SP+    A
Sbjct: 17  RGTAVVLGNTPAGDKIQYCN-GTSVYTVP-VGSLTDTEIYTEHSHQTTVAKTSPSGYYCA 74

Query: 551 TGSLDTCVIIYEIDKPASSRMTIKGAHLGGVY 582
           +G +   V I++  +      T      G V 
Sbjct: 75  SGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK 106

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.7 bits (119), Expect = 2e-07
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK 246
           HS  V  + +SPDG+K  S S+DK   I++  T      +      +     + W+    
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA- 295

Query: 247 QVLTASADKSAKVWDI 262
            +++ SA+      + 
Sbjct: 296 -LVSISANGFINFVNP 310

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 25/304 (8%), Positives = 68/304 (22%), Gaps = 28/304 (9%)

Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ 292
           +G+   +  +P G ++   +   S     +         +  T                 
Sbjct: 17  RGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGS---LTDTEIYT-----EHSHQTTVAKTS 67

Query: 293 ND--FLVIVSLGGTI-SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLI 349
               +     + G +    +          +      V  ++  +   ++          
Sbjct: 68  PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 350 VKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGS 409
                             ++       +                   +   +      G 
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187

Query: 410 QPKDLSVALHYPELVLVSTDSGVVLLRGAEVVS-------------TINLRFPVTASAIA 456
             K +    + P+  L ++  G   +     V               +     V     +
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247

Query: 457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH-RGAVSVIRYSPDVSMFASGDVNREA 515
           PDG++    S D  ++++++   TL  E  +    R     +          S   N   
Sbjct: 248 PDGTKIASASADKTIKIWNVA--TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFI 305

Query: 516 IVWD 519
              +
Sbjct: 306 NFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 4/103 (3%)

Query: 447 RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF 506
           R         P G +    +    +    +   +LT+  +  +H    +V + SP     
Sbjct: 17  RGTAVVLGNTPAGDKIQYCN-GTSVYTVPV--GSLTDTEIYTEHSHQTTVAKTSPSGYYC 73

Query: 507 ASGDVNREAIVW-DRVSREVKLKNMLYHTARINCLAWSPNNSM 548
           ASGDV+    +W    +  +    +   +  +  ++W   +  
Sbjct: 74  ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKR 116

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 2/77 (2%)

Query: 529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT- 587
             + H+  +  L WSP+ + +A+ S D  + I+ +      + TI          L    
Sbjct: 233 KNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEK-TIPVGTRIEDQQLGIIW 291

Query: 588 DEHSVVSSGEDACVRVW 604
            + ++VS   +  +   
Sbjct: 292 TKQALVSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.5 bits (90), Expect = 7e-04
 Identities = 31/283 (10%), Positives = 68/283 (24%), Gaps = 16/283 (5%)

Query: 296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355
            +    G ++       L  +    + H    T     +       S    G +  W   
Sbjct: 31  KIQYCNGTSVYTVPVGSLTDTE-IYTEHSHQTTVAKT-SPSGYYCASGDVHGNVRIWDTT 88

Query: 356 IGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS 415
                                 +            R            + +     +  +
Sbjct: 89  QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARA 148

Query: 416 VALHYPELVLVSTDSGVVLLRGAEVVSTINLRF---------PVTASAIAPDGSEAIIGS 466
           +     +                 +      +F          V +    PDGS      
Sbjct: 149 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 208

Query: 467 QDGKLRVYSIRGDTLTEEAV-----LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRV 521
            DG + +Y+    T T            H G+V  + +SPD +  AS   ++   +W+  
Sbjct: 209 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 268

Query: 522 SREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564
           + +V+    +        L        + + S +  +     +
Sbjct: 269 TLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  119 bits (298), Expect = 2e-30
 Identities = 95/325 (29%), Positives = 148/325 (45%), Gaps = 24/325 (7%)

Query: 3   QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDL-----SNPLQVSIYGEHA 57
            L E     PST+R     +S  P +N+I Y  G+S  +  L       P  V   G  +
Sbjct: 4   SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 58  YPATVARFSP--NGEWIASADVSGTVRIWGAHNDHVL-------KKEFRVLSGRIDDLQW 108
              T  +FSP    +++ S D SG V +WG   D          K EF+VL+G I D+ W
Sbjct: 64  SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 109 SPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDF 168
             +G R+         +      WDSG ++GE  GHS+R+ +C  K SRP R  T G+D 
Sbjct: 124 DFEGRRL-CVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDG 182

Query: 169 LVNFYEGPPFK---FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI-IYDGKTADKIG 224
            V FY+GPPFK      +H    +FV  V FSPD  +F+      + I  +DGK+ + + 
Sbjct: 183 SVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK 242

Query: 225 ELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD 284
            +  +              D ++  T  AD + +VWD++     K  +  T      + +
Sbjct: 243 YIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTT---SKCVQKWTLDKQ-QLGN 298

Query: 285 MLVGCLWQND-FLVIVSLGGTISIF 308
             VG +   +  ++ +SL GT++ +
Sbjct: 299 QQVGVVATGNGRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 45/312 (14%), Positives = 90/312 (28%), Gaps = 20/312 (6%)

Query: 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS-VYAVSWSP 243
               NF   + + P  +           +        K+  +    GH  S V  V +SP
Sbjct: 14  STQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSP 73

Query: 244 --DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND---FLVI 298
               + + +        VW  + D      +    S    +   +    W  +     V+
Sbjct: 74  IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV 133

Query: 299 VSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGY 358
                   +F + D   S  ++SGH + + A  +    P   ++   DG +V +      
Sbjct: 134 GEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK 193

Query: 359 GGKLQRKENSQIKCFAAIEEEIVTSGFDNKI--------WRVSLQGDQCGYANSIDIGSQ 410
                R  + Q      +E    +  F   +        +            +  +    
Sbjct: 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 253

Query: 411 PKDLSVALHYPELVLVSTDSGVVL--LRGAEVVSTINL---RFPVTASAIAPDGSEAII- 464
                  L   +   V  D+ + +  +  ++ V    L   +       +   G+  II 
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313

Query: 465 GSQDGKLRVYSI 476
            S DG L  Y +
Sbjct: 314 LSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.3 bits (105), Expect = 1e-05
 Identities = 13/109 (11%), Positives = 32/109 (29%), Gaps = 11/109 (10%)

Query: 490 HRGAVSVIRYSPDVSMFASGDVNREAI-VWDRVSREVKLKNMLY--HTARINCLAWSPNN 546
            R   + + Y P  +  A        +   D    +V          ++ +  + +SP  
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 547 S--MVATGSLDTCVIIYEIDKPASSRM------TIKGAHLGGVYGLAFT 587
               + +G     VI++       S        +      G +  +++ 
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 26/309 (8%), Positives = 72/309 (23%), Gaps = 21/309 (6%)

Query: 232 HKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW 291
            +     +S+ P    +       +        D+        T  GS  V  +    + 
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIK 75

Query: 292 QNDFLVIVSLGGTISIFSANDLEKSPL-------QLSGHMKNVTALTVL-NIDPKVILSS 343
            + +L      G + ++     ++S         +       ++ ++         ++  
Sbjct: 76  GSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135

Query: 344 SYDGLIVKWIQGIGYGGKL---QRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCG 400
             D   V      G          +  +      +     +T G D  +        +  
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195

Query: 401 YANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLL---------RGAEVVSTINLRFPVT 451
            ++            V         V T      +             +           
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255

Query: 452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV-SMFASGD 510
            +    D  +      D  +RV+ +      ++  L+K +     +           S  
Sbjct: 256 FALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLS 315

Query: 511 VNREAIVWD 519
           ++     ++
Sbjct: 316 LDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.9 bits (91), Expect = 6e-04
 Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 11/129 (8%)

Query: 447 RFPVTASAIAPDGSEAIIGSQDGK-LRVYSIRGDTLTEEAVLEKHRG-AVSVIRYSPDVS 504
           R   T  +  P  +           +R        +        H    V+ +++SP   
Sbjct: 17  RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKG 76

Query: 505 --MFASGDVNREAIVWDRVSREVKLKNMLY-------HTARINCLAWSPNNSMVATGSLD 555
                SGD + + IVW     +      +            I+ ++W      +      
Sbjct: 77  SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG 136

Query: 556 TCVIIYEID 564
                  I 
Sbjct: 137 RDNFGVFIS 145

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 2/80 (2%)

Query: 529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVY--GLAF 586
           +               ++   AT   D  + ++++      +         G    G+  
Sbjct: 246 DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA 305

Query: 587 TDEHSVVSSGEDACVRVWRL 606
           T    ++S   D  +  + L
Sbjct: 306 TGNGRIISLSLDGTLNFYEL 325

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 14/83 (16%), Positives = 24/83 (28%), Gaps = 7/83 (8%)

Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSR---MTIKGAHLGGVYGLAF--- 586
                  L++ P  + +A         +  +D   S     +   G     V  + F   
Sbjct: 16  QRNFTTHLSYDPTTNAIAYPCGK-SAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 74

Query: 587 TDEHSVVSSGEDACVRVWRLTPN 609
                + S  E   V VW  T +
Sbjct: 75  KGSQYLCSGDESGKVIVWGWTFD 97

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (266), Expect = 4e-26
 Identities = 52/332 (15%), Positives = 109/332 (32%), Gaps = 29/332 (8%)

Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
           GH+  V  V + P    +++AS D + KVWD      G  ++TL     G  D +     
Sbjct: 15  GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYET---GDFERTLK----GHTDSVQDISF 67

Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
             +  L+                 +    + GH  NV++++++     ++ +S    + +
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 127

Query: 351 KWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQ 410
             +Q                      +  ++ S  +++  RV +   +   A   +    
Sbjct: 128 WEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187

Query: 411 PKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGK 470
            + +S A       +                                 G   + GS+D  
Sbjct: 188 VECISWAPESSYSSISEATG-------------------SETKKSGKPGPFLLSGSRDKT 228

Query: 471 LRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNM 530
           ++++ +   T      L  H   V  + +        S   ++   VWD  ++   +K +
Sbjct: 229 IKMWDVS--TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-MKTL 285

Query: 531 LYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
             H   +  L +      V TGS+D  V ++E
Sbjct: 286 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  103 bits (256), Expect = 8e-25
 Identities = 43/216 (19%), Positives = 84/216 (38%), Gaps = 26/216 (12%)

Query: 65  FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124
             PNG+ I SA    T+++W     + +K  F      +  ++ + DG  I +C + +  
Sbjct: 109 IMPNGDHIVSASRDKTIKMWEVQTGYCVKT-FTGHREWVRMVRPNQDGTLIASCSNDQ-- 165

Query: 125 SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPF-------------------RIATCG 165
             VR ++  +     E   H   V   ++ P   +                    + +  
Sbjct: 166 -TVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224

Query: 166 EDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGE 225
            D  +  ++       ++  GH N+V  V F   G   +S + DK   ++D K    +  
Sbjct: 225 RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT 284

Query: 226 LSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
           L+    H+  V ++ +      V+T S D++ KVW+
Sbjct: 285 LN---AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 95.2 bits (235), Expect = 5e-22
 Identities = 62/317 (19%), Positives = 108/317 (34%), Gaps = 36/317 (11%)

Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI 115
           H  P T   F P    + SA    T+++W            R L G  D +Q        
Sbjct: 16  HRSPVTRVIFHPVFSVMVSASEDATIKVWDYET----GDFERTLKGHTDSVQDISFDHSG 71

Query: 116 VACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175
                      ++ + +     +    GH   V S +  P+    I +   D  +  +E 
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH-IVSASRDKTIKMWEV 130

Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS 235
                  +  GH  +V  VR + DG+   S S+D+   ++   T +   EL     H+  
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR---EHRHV 187

Query: 236 VYAVSW--------------------SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT 275
           V  +SW                       G  +L+ S DK+ K+WD+S    G    TL 
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST---GMCLMTLV 244

Query: 276 PSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI 335
              +       V       F++  +   T+ ++   +       L+ H   VT+L   + 
Sbjct: 245 GHDNWVRG---VLFHSGGKFILSCADDKTLRVWDYKNKRCM-KTLNAHEHFVTSLDF-HK 299

Query: 336 DPKVILSSSYDGLIVKW 352
               +++ S D  +  W
Sbjct: 300 TAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 91.3 bits (225), Expect = 1e-20
 Identities = 64/347 (18%), Positives = 114/347 (32%), Gaps = 39/347 (11%)

Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS 235
           PP K+ L   GH + V  V F P  S  +S S D    ++D +T D    L    GH  S
Sbjct: 7   PPEKYAL--SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLK---GHTDS 61

Query: 236 VYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF 295
           V  +S+   GK         S       +    +  + +        +   V  +   D 
Sbjct: 62  VQDISFDHSGKL------LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDH 115

Query: 296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG 355
           +V  S   TI ++            +GH +    +   N D  +I S S D  +      
Sbjct: 116 IVSASRDKTIKMWEVQT-GYCVKTFTGH-REWVRMVRPNQDGTLIASCSNDQTV------ 167

Query: 356 IGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLS 415
                        ++   A  E +       + +  +S   +    + S   GS+ K   
Sbjct: 168 -------------RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 214

Query: 416 VALHYPELVLVSTDSGVVLLR---GAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLR 472
               +  L+  S D  + +     G  +++ +     V        G   +  + D  LR
Sbjct: 215 KPGPF--LLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLR 272

Query: 473 VYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
           V+  +         L  H   V+ + +        +G V++   VW+
Sbjct: 273 VWDYK--NKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 81.3 bits (199), Expect = 2e-17
 Identities = 34/210 (16%), Positives = 73/210 (34%), Gaps = 20/210 (9%)

Query: 25  HPKSNSIL-YTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRI 83
            P  + I+  +  +++ + ++     V  +  H     + R + +G  IAS     TVR+
Sbjct: 110 MPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRV 169

Query: 84  WGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD-----------------GKGKSL 126
           W        K E R     ++ + W+P+                          G     
Sbjct: 170 W-VVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT 228

Query: 127 VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRG 186
           ++ +   +G  +    GH   V    F     F I +C +D  +  ++    +   +   
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF-ILSCADDKTLRVWDYKNKRCMKTLNA 287

Query: 187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216
           H +FV  + F       ++ S D+   +++
Sbjct: 288 HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.5 bits (184), Expect = 2e-15
 Identities = 48/310 (15%), Positives = 103/310 (33%), Gaps = 31/310 (10%)

Query: 320 LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEE 379
           LSGH   VT +   +    V++S+S D  I  W    G   +  +     ++  +     
Sbjct: 13  LSGHRSPVTRVIF-HPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSG 71

Query: 380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAE 439
            + +     +              ++            +   + ++ ++    + +   +
Sbjct: 72  KLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 440 VVSTINL----RFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVS 495
               +      R  V       DG+     S D  +RV+ +   T   +A L +HR  V 
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV--ATKECKAELREHRHVVE 189

Query: 496 VIRYSPDVSMFA--------------------SGDVNREAIVWDRVSREVKLKNMLYHTA 535
            I ++P+ S  +                    SG  ++   +WD  +    L  ++ H  
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-LMTLVGHDN 248

Query: 536 RINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVS 594
            +  + +      + + + D  + +++       + T+   H   V  L F      VV+
Sbjct: 249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK-TLNA-HEHFVTSLDFHKTAPYVVT 306

Query: 595 SGEDACVRVW 604
              D  V+VW
Sbjct: 307 GSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 6e-08
 Identities = 18/117 (15%), Positives = 37/117 (31%), Gaps = 8/117 (6%)

Query: 19  GILISGHPKSNSILYTNG--RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD 76
           G       K    L +    +++ + D+S  + +     H        F   G++I S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 77  VSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD 133
              T+R+W   N   + K        +  L +      +V     +        +W+
Sbjct: 267 DDKTLRVWDYKNKRCM-KTLNAHEHFVTSLDFHKTAPYVVTGSVDQ-----TVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (108), Expect = 6e-06
 Identities = 22/124 (17%), Positives = 52/124 (41%), Gaps = 2/124 (1%)

Query: 483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW 542
           E+  L  HR  V+ + + P  S+  S   +    VWD  + +   + +  HT  +  +++
Sbjct: 9   EKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISF 67

Query: 543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVR 602
             +  ++A+ S D  + +++         T+ G            +   +VS+  D  ++
Sbjct: 68  DHSGKLLASCSADMTIKLWDFQGF-ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIK 126

Query: 603 VWRL 606
           +W +
Sbjct: 127 MWEV 130

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 30/203 (14%), Positives = 61/203 (30%), Gaps = 47/203 (23%)

Query: 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIR---------- 498
           PVT     P  S  +  S+D  ++V+    +T   E  L+ H  +V  I           
Sbjct: 19  PVTRVIFHPVFSVMVSASEDATIKVWDY--ETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 499 --------------------------------YSPDVSMFASGDVNREAIVWDRVSREVK 526
                                             P+     S   ++   +W  V     
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW-EVQTGYC 135

Query: 527 LKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAF 586
           +K    H   +  +  + + +++A+ S D  V ++ +      +  ++  H   V  +++
Sbjct: 136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK-ECKAELRE-HRHVVECISW 193

Query: 587 TDEHSVVSSGEDACVRVWRLTPN 609
             E S  S  E       +    
Sbjct: 194 APESSYSSISEATGSETKKSGKP 216

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 97.5 bits (241), Expect = 1e-22
 Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 6/137 (4%)

Query: 127 VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED--FLVNFYEGPPFKFKLSH 184
            + +    G     F GH   + +  F P+     AT  +D    +            SH
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNA-FATGSDDATCRLFDLRADQELMTYSH 266

Query: 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
                 +  V FS  G   ++   D    ++D   AD+ G L+   GH   V  +  + D
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLA---GHDNRVSCLGVTDD 323

Query: 245 GKQVLTASADKSAKVWD 261
           G  V T S D   K+W+
Sbjct: 324 GMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.9 bits (229), Expect = 3e-21
 Identities = 49/297 (16%), Positives = 100/297 (33%), Gaps = 11/297 (3%)

Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI 115
           H        +  +   + SA   G + IW ++  + +     + S  +    ++P G   
Sbjct: 54  HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA-IPLRSSWVMTCAYAPSG-NY 111

Query: 116 VACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175
           VACG       +       G      +           +     +I T   D     ++ 
Sbjct: 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDI 171

Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS 235
              +   +  GH+  V  +  +PD   F+S + D    ++D +            GH+  
Sbjct: 172 ETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTF---TGHESD 228

Query: 236 VYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF 295
           + A+ + P+G    T S D + +++D+  D                     V        
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG----ITSVSFSKSGRL 284

Query: 296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
           L+        +++ A   ++    L+GH   V+ L V + D   + + S+D  +  W
Sbjct: 285 LLAGYDDFNCNVWDALKADR-AGVLAGHDNRVSCLGVTD-DGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 80.6 bits (197), Expect = 4e-17
 Identities = 43/294 (14%), Positives = 98/294 (33%), Gaps = 14/294 (4%)

Query: 320 LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEE 379
           L GH+  + A+     D ++++S+S DG ++ W              +S +   A     
Sbjct: 51  LRGHLAKIYAMHW-GTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109

Query: 380 IVTSGFDNKIWRVSLQGDQCGY-------ANSIDIGSQPKDLSVALHYPELVLVSTDSGV 432
              +                                                  +T +  
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 433 VLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG 492
            +  G +  +       V + ++APD    + G+ D   +++ +R            H  
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR--EGMCRQTFTGHES 227

Query: 493 AVSVIRYSPDVSMFASGDVNREAIV-WDRVSREVKLKNMLYHTARINCLAWSPNNSMVAT 551
            ++ I + P+ + FA+G  +    +   R  +E+   +       I  +++S +  ++  
Sbjct: 228 DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLA 287

Query: 552 GSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVW 604
           G  D    +++  K   +   + G H   V  L  T D  +V +   D+ +++W
Sbjct: 288 GYDDFNCNVWDALKADRAG-VLAG-HDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.4 bits (194), Expect = 1e-16
 Identities = 28/161 (17%), Positives = 51/161 (31%), Gaps = 3/161 (1%)

Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI 115
           H         +P+     S     + ++W        +  F      I+ + + P+G   
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT-FTGHESDINAICFFPNG-NA 240

Query: 116 VACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175
            A G       +     D        D     + S +F  S    +    +DF  N ++ 
Sbjct: 241 FATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL-LLAGYDDFNCNVWDA 299

Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216
                     GH N V+C+  + DG    + S D    I++
Sbjct: 300 LKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 1e-13
 Identities = 42/294 (14%), Positives = 81/294 (27%), Gaps = 11/294 (3%)

Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
           GH   +YA+ W  D + +++AS D    +WD    N        +              +
Sbjct: 53  GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYV 112

Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
                  I S+    +      + +     +GH   ++    L+ +  V  S      + 
Sbjct: 113 ACGGLDNICSIYNLKTREGNVRVSREL---AGHTGYLSCCRFLDDNQIVTSSGDTTCALW 169

Query: 351 KWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQ 410
               G           +      A      V+   D       ++   C         S 
Sbjct: 170 DIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESD 228

Query: 411 PKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF-----PVTASAIAPDGSEAIIG 465
              +    +       S D+   L         +          +T+ + +  G   + G
Sbjct: 229 INAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAG 288

Query: 466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
             D    V+           VL  H   VS +  + D    A+G  +    +W+
Sbjct: 289 YDDFNCNVWDAL--KADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 1e-10
 Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 2/118 (1%)

Query: 490 HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV 549
           H G V  +  +PD  +F SG  +  A +WD        +    H + IN + + PN +  
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC-RQTFTGHESDINAICFFPNGNAF 241

Query: 550 ATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL 606
           ATGS D    ++++              + G+  ++F+     +++  +D    VW  
Sbjct: 242 ATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDA 299

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.6 bits (101), Expect = 4e-05
 Identities = 6/51 (11%), Positives = 18/51 (35%)

Query: 34  TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW 84
            +  +  + D     +  +   H    +    + +G  +A+      ++IW
Sbjct: 289 YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 93.7 bits (231), Expect = 4e-21
 Identities = 57/371 (15%), Positives = 125/371 (33%), Gaps = 44/371 (11%)

Query: 20  ILISGHPKSNSILYT--NGRSVIILDLSNPLQVSI----YGEHAYPATVARFSPNGEWIA 73
            L+    +S             I+ + + P ++ +      +H       +FS +GE++A
Sbjct: 19  FLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLA 78

Query: 74  SADVSGTVRIWGAHNDHVLKK-----------------EFRVLSGRIDDLQWSPDGLRIV 116
           +   + T +++   +  ++ +                         I  + +SPDG  + 
Sbjct: 79  TGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA 137

Query: 117 ACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP 176
              + +               +        + +          ++ +   D  V  ++  
Sbjct: 138 TGAEDRLIR----IWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLR 193

Query: 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED----GH 232
             +  L+               DG    + S D+   ++D +T   +  L  E+    GH
Sbjct: 194 TGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGH 253

Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ 292
           K SVY+V ++ DG+ V++ S D+S K+W++   N+    KT                +  
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313

Query: 293 ------NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNI-----DPKVIL 341
                 +++++  S    +  +         L L GH  +V ++ V N      +  V  
Sbjct: 314 VATTQNDEYILSGSKDRGVLFWDKKSGNPL-LMLQGHRNSVISVAVANGSSLGPEYNVFA 372

Query: 342 SSSYDGLIVKW 352
           + S D     W
Sbjct: 373 TGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.2 bits (214), Expect = 5e-19
 Identities = 62/399 (15%), Positives = 127/399 (31%), Gaps = 43/399 (10%)

Query: 187 HSNFVNCVRFSPDGSKF---ISVSSDKKGIIYDGKTADKI-GELSPEDGHKGSVYAVSWS 242
           HS  +       D       +   ++   I+Y+     +I  EL     H   V  V +S
Sbjct: 12  HSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS 71

Query: 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG 302
            DG+ + T   +K+ +V+ +S+     L   L+   +   D   +            S  
Sbjct: 72  NDGEYLATGC-NKTTQVYRVSDG---SLVARLSDDSAANKDPENLNTS--------SSPS 119

Query: 303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL 362
             + I S           +G    +  +  +     V++   ++  I            +
Sbjct: 120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLV 179

Query: 363 QRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPE 422
               +  ++ +     +   +                G    I  GS  + + V      
Sbjct: 180 SGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDG--KYIAAGSLDRAVRVWDSETG 237

Query: 423 LVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRG---- 478
            ++   DS      G         +  V +     DG   + GS D  +++++++     
Sbjct: 238 FLVERLDSENESGTGH--------KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNK 289

Query: 479 ------DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY 532
                 ++ T E     H+  V  +  + +     SG  +R  + WD+ S    L  +  
Sbjct: 290 SDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQG 348

Query: 533 HTARINCLA------WSPNNSMVATGSLDTCVIIYEIDK 565
           H   +  +A        P  ++ ATGS D    I++  K
Sbjct: 349 HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.9 bits (203), Expect = 1e-17
 Identities = 41/239 (17%), Positives = 81/239 (33%), Gaps = 49/239 (20%)

Query: 38  SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHND------HV 91
           +V I DL                TVA    +G++IA+  +   VR+W +           
Sbjct: 186 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 245

Query: 92  LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSC 151
             +        +  + ++ DG  +V+    +    V+ +   +  N  +           
Sbjct: 246 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS---VKLWNLQNANNKSDSKTP------- 295

Query: 152 AFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKK 211
                                        ++++ GH +FV  V  + +    +S S D+ 
Sbjct: 296 ------------------------NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 212 GIIYDGKTADKIGELSPEDGHKGSVYAV------SWSPDGKQVLTASADKSAKVWDISE 264
            + +D K+ + +  L    GH+ SV +V      S  P+     T S D  A++W   +
Sbjct: 332 VLFWDKKSGNPLLMLQ---GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.4 bits (181), Expect = 7e-15
 Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 25/173 (14%)

Query: 457 PDGSEAIIGSQDGKLRVYSIRGDTL-----TEEAVLEKHRGAVSVIRYSPDVSMFASGDV 511
            DG     GS D  +RV+      L     +E      H+ +V  + ++ D     SG +
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL 274

Query: 512 NREAIVWDRVSREVK-----------LKNMLYHTARINCLAWSPNNSMVATGSLDTCVII 560
           +R   +W+  +   K               + H   +  +A + N+  + +GS D  V+ 
Sbjct: 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334

Query: 561 YEIDKPASSRMTIKGAHLGGVYGLAFT-------DEHSVVSSGEDACVRVWRL 606
           ++     +  + ++G H   V  +A         + +   +   D   R+W+ 
Sbjct: 335 WDKKS-GNPLLMLQG-HRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 9e-07
 Identities = 21/125 (16%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 499 YSPDVSMFASGDVNREAIVWDRVSREV------KLKNMLYHTARINCLAWSPNNSMVATG 552
              D    A+G ++R   VWD  +  +      + ++   H   +  + ++ +   V +G
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 553 SLDTCVIIYEIDKPASSRMTIKGAHL----------GGVYGLAFT-DEHSVVSSGEDACV 601
           SLD  V ++ +    +   +                  V  +A T ++  ++S  +D  V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 602 RVWRL 606
             W  
Sbjct: 333 LFWDK 337

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.2 bits (100), Expect = 6e-05
 Identities = 17/112 (15%), Positives = 39/112 (34%), Gaps = 18/112 (16%)

Query: 503 VSMFASGDVNREAIVWD---RVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVI 559
           V        N   I+++       +V+L   L HT+ + C+ +S +   +ATG   T  +
Sbjct: 28  VPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQV 87

Query: 560 ---------------IYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSG 596
                                P +   +   +    +  + F+ +   +++G
Sbjct: 88  YRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG 139

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 92.6 bits (228), Expect = 7e-21
 Identities = 46/390 (11%), Positives = 107/390 (27%), Gaps = 32/390 (8%)

Query: 184 HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
           H      ++C  ++ D ++     ++ +  IY+    +K  ++     H G V  V W+P
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAP 61

Query: 244 DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGG 303
           D  +++T   D++A VW +      K    +                 +        +  
Sbjct: 62  DSNRIVTCGTDRNAYVWTLKGRTW-KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVIS 120

Query: 304 TISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ 363
                  ND              V +L        +   S      +          +  
Sbjct: 121 ICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPA 180

Query: 364 RKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL 423
                    F  +  E   S     +  V    +    A            +V L   + 
Sbjct: 181 PTPWGSKMPFGELMFES--SSSCGWVHGVCFSANGSRVAWVSHDS------TVCLADAD- 231

Query: 424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE 483
                       +   V +  +   P+ A     + S    G  D    +++   D+   
Sbjct: 232 ------------KKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTY--DSAAG 276

Query: 484 EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS 543
           +                   +     +++++A      +    L ++  H   ++ ++  
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL--HKNSVSQISVL 334

Query: 544 P----NNSMVATGSLDTCVIIYEIDKPASS 569
                  S   T  +D  + I+++    S+
Sbjct: 335 SGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.4 bits (160), Expect = 3e-12
 Identities = 56/361 (15%), Positives = 103/361 (28%), Gaps = 36/361 (9%)

Query: 59  PATVARFSPNGEWIASADVSGTVRIWGAH-NDHVLKKEFRVLSGRIDDLQWSPDGLRIVA 117
           P +   ++ +   IA    +  V I+    N  V   E +  +G++  + W+PD  RIV 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 118 CG-DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP 176
           CG D               T V      + R +  A    +    +      +  F +  
Sbjct: 69  CGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEN 128

Query: 177 PFKFKLSHRGHSNF-VNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE------ 229
            +      +      V  + + P+     + S D K  I+     +     +P       
Sbjct: 129 DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKM 188

Query: 230 ---------DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG 280
                        G V+ V +S +G +V   S D +  + D  +        + T     
Sbjct: 189 PFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET----- 243

Query: 281 GVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI 340
               +L         LV         +F+  D     L   G +      +         
Sbjct: 244 --LPLLAVTFITESSLVAAGHDCFPVLFTY-DSAAGKLSFGGRLDVPKQ-SSQRGLTARE 299

Query: 341 LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE------EIVTSGFDN--KIWRV 392
              + D            G  L     + +   + +        +  T+G D    IW V
Sbjct: 300 RFQNLDKKASSEGSAAA-GAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDV 358

Query: 393 S 393
            
Sbjct: 359 R 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.7 bits (153), Expect = 2e-11
 Identities = 40/382 (10%), Positives = 93/382 (24%), Gaps = 36/382 (9%)

Query: 232 HKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW 291
               +   +W+ D  Q+     +    +++    N       L        +  + G  W
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELK-----EHNGQVTGVDW 59

Query: 292 QND--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLI 349
             D   +V         +++       P  +   +           + K     S   +I
Sbjct: 60  APDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVI 119

Query: 350 VKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGS 409
                        Q  +    K         V S   +    +   G             
Sbjct: 120 SICYFE-------QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYI 172

Query: 410 QPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDG 469
           +  +   A       +   +               +    V     + +GS     S D 
Sbjct: 173 KEVEERPAPTPWGSKMPFGELMFES---------SSSCGWVHGVCFSANGSRVAWVSHDS 223

Query: 470 KLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN 529
            + +     D     A L      +  + +  + S+ A+G  +   +++   S   KL  
Sbjct: 224 TVCLADA--DKKMAVATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLS- 279

Query: 530 MLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDE 589
                      +     +     +LD            +   ++   H   V  ++    
Sbjct: 280 FGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL---HKNSVSQISVLSG 336

Query: 590 HS-----VVSSGEDACVRVWRL 606
                    ++G D  + +W +
Sbjct: 337 GKAKCSQFCTTGMDGGMSIWDV 358

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.9 bits (143), Expect = 3e-10
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 4/77 (5%)

Query: 532 YHTA---RINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT- 587
           YH+     I+C AW+ + + +A    +  V IYE       ++     H G V G+ +  
Sbjct: 2   YHSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61

Query: 588 DEHSVVSSGEDACVRVW 604
           D + +V+ G D    VW
Sbjct: 62  DSNRIVTCGTDRNAYVW 78

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.6 bits (132), Expect = 6e-09
 Identities = 26/171 (15%), Positives = 46/171 (26%), Gaps = 11/171 (6%)

Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI 115
                    FS NG  +A      TV +  A     +       +  +  + +  +   +
Sbjct: 200 SCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASE-TLPLLAVTFITESSLV 258

Query: 116 VACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175
            A  D         F +DS      F G        + +                   EG
Sbjct: 259 AAGHDCF----PVLFTYDSAAGKLSFGGRLDVPKQSSQRGL--TARERFQNLDKKASSEG 312

Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDG----SKFISVSSDKKGIIYDGKTADK 222
                      H N V+ +     G    S+F +   D    I+D ++ + 
Sbjct: 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.2 bits (131), Expect = 9e-09
 Identities = 50/344 (14%), Positives = 86/344 (25%), Gaps = 38/344 (11%)

Query: 34  TNGRSVIILDLSN--PLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV 91
            N   V I + S    +QV    EH    T   ++P+   I +        +W       
Sbjct: 26  PNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW 85

Query: 92  LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM-WDSGTNVGEFDGHSRRVLS 150
                 +   R           +  A G G     +  F   +            R  + 
Sbjct: 86  KPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145

Query: 151 CAFKPSRPFRIATCGEDFLVNFYEG------------------PPFKFKLSHRGHSNFVN 192
                     +A    DF    +                    P  +          +V+
Sbjct: 146 SLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVH 205

Query: 193 CVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS 252
            V FS +GS+   VS D    + D   ADK   ++        + AV++  +   V    
Sbjct: 206 GVCFSANGSRVAWVSHDSTVCLAD---ADKKMAVATLASETLPLLAVTFITESSLVAAGH 262

Query: 253 ADKSA-KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAN 311
                   +D +        +   P  S              D                 
Sbjct: 263 DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSE----------G 312

Query: 312 DLEKSPLQLSGHMKNVTALTVL---NIDPKVILSSSYDGLIVKW 352
                    S H  +V+ ++VL           ++  DG +  W
Sbjct: 313 SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIW 356

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.5 bits (189), Expect = 4e-16
 Identities = 54/332 (16%), Positives = 121/332 (36%), Gaps = 26/332 (7%)

Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
           GH   V        G ++++ S D + KVW       GK  +TL    +GGV        
Sbjct: 14  GHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVT---GKCLRTLV-GHTGGV-------- 60

Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
           W +     + + G+          ++   +     + + +  +++  K ++S S D  + 
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 351 KWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQ 410
            W    G    +     + ++C       +V+  +D  +     + + C        G  
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETC---LHTLQGHT 177

Query: 411 PKDLSVALHYPELVLVSTDSGVVL--LRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQD 468
            +  S+      +V  S D+ + +  +     + T+     +T S +    +  + G+ D
Sbjct: 178 NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-SGMELKDNILVSGNAD 236

Query: 469 GKLRVYSIR-GDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD----RVSR 523
             ++++ I+ G  L       KH+ AV+ ++++ +  + +S D      +WD       R
Sbjct: 237 STVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD--GTVKLWDLKTGEFIR 294

Query: 524 EVKLKNMLYHTARINCLAWSPNNSMVATGSLD 555
            +           +  +  S    + A GS +
Sbjct: 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRN 326

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 5e-14
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 16/217 (7%)

Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI 115
             + A V     +G  + S      V++W    +  L     +            DG+ +
Sbjct: 134 MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHT---LQGHTNRVYSLQFDGIHV 190

Query: 116 VACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175
           V+         +R +  ++G  +    GH         K +    + +   D  V  ++ 
Sbjct: 191 VSGSLDTS---IRVWDVETGNCIHTLTGHQSLTSGMELKDNI---LVSGNADSTVKIWDI 244

Query: 176 PPFKFKLSHRGHSNFVNCVRF-SPDGSKFISVSSDKKGIIYDGKTADKIGELS--PEDGH 232
              +   + +G +   + V     + +  I+ S D    ++D KT + I  L      G 
Sbjct: 245 KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGS 304

Query: 233 KGSVYAVSWSPDGKQVLTASADKSA----KVWDISED 265
            G V+ +  S         S + +      V D   D
Sbjct: 305 GGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 341

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (166), Expect = 4e-13
 Identities = 55/353 (15%), Positives = 103/353 (29%), Gaps = 31/353 (8%)

Query: 132 WDSGT--NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSN 189
           W  G   +     GH   V++C  +     RI +  +D  +  +     K   +  GH+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFC-GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58

Query: 190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL 249
            V   +   +     S     K    +               +  +          K+V+
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGE-------CIHTLYGHTSTVRCMHLHEKRVV 111

Query: 250 TASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS 309
           + S D + +VWD      G+    L      G    +    +    +V  +    + ++ 
Sbjct: 112 SGSRDATLRVWD---IETGQCLHVLM-----GHVAAVRCVQYDGRRVVSGAYDFMVKVWD 163

Query: 310 ANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQ 369
               E     L GH   V     L  D   ++S S D  I  W    G          S 
Sbjct: 164 PET-ETCLHTLQGHTNRV---YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 219

Query: 370 IKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTD 429
                  +  +V+   D+ +    ++  QC          Q     +  +   ++  S D
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDD 279

Query: 430 SGVVL--LRGAEVVSTINLRF------PVTASAIAPDGSEAIIGSQDGKLRVY 474
             V L  L+  E +  +           V     +       +GS++G     
Sbjct: 280 GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 332

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 5e-13
 Identities = 46/326 (14%), Positives = 96/326 (29%), Gaps = 50/326 (15%)

Query: 65  FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD---- 120
               G  I S     T+++W A     L +     +G +   Q   + +   +       
Sbjct: 23  LQFCGNRIVSGSDDNTLKVWSAVTGKCL-RTLVGHTGGVWSSQMRDNIIISGSTDRTLKV 81

Query: 121 -------------GKGKSLVRAFMWDSGTNVGEFDGH---------------SRRVLSCA 152
                        G   ++    + +     G  D                    V +  
Sbjct: 82  WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141

Query: 153 FKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG 212
                  R+ +   DF+V  ++        + +GH+N         DG   +S S D   
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQFDGIHVVSGSLDTSI 199

Query: 213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKK 272
            ++D    +    +    GH+     +    +   +++ +AD + K+WDI      +  +
Sbjct: 200 RVWD---VETGNCIHTLTGHQSLTSGMELKDN--ILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 273 TLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEK----SPLQLSGHMKNVT 328
                        +    +  +F++  S  GT+ ++     E       L+  G    V 
Sbjct: 255 GPNKH-----QSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVW 309

Query: 329 ALTVLNIDPKVILSSSYDGLIVKWIQ 354
            +   N    V    S +G     + 
Sbjct: 310 RIRASN-TKLVCAVGSRNGTEETKLL 334

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 51/300 (17%), Positives = 97/300 (32%), Gaps = 27/300 (9%)

Query: 315 KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFA 374
           KSP  L GH  +V  +T L      I+S S D  +  W                 ++   
Sbjct: 7   KSPKVLKGHDDHV--ITCLQFCGNRIVSGSDDNTLKVW----------SAVTGKCLRTLV 54

Query: 375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKD-------LSVALHYPELVLVS 427
                + +S   + I             N+                  + LH   +V  S
Sbjct: 55  GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGS 114

Query: 428 TDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG-SQDGKLRVYSIRGDTLTEEAV 486
            D+ + +           L   V A          ++  + D  ++V+    +T      
Sbjct: 115 RDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCL--HT 172

Query: 487 LEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNN 546
           L+ H     V     D     SG ++    VWD V     +  +  H +  + +    N 
Sbjct: 173 LQGH--TNRVYSLQFDGIHVVSGSLDTSIRVWD-VETGNCIHTLTGHQSLTSGMELKDN- 228

Query: 547 SMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL 606
            ++ +G+ D+ V I++I      +                 +++ V++S +D  V++W L
Sbjct: 229 -ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDL 287

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 16/160 (10%), Positives = 39/160 (24%), Gaps = 9/160 (5%)

Query: 13  STERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWI 72
            T +G    +         + +      I          I+    + +  +        +
Sbjct: 171 HTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNIL 230

Query: 73  ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMW 132
            S +   TV+IW       L+        +        +   ++   D      V+ +  
Sbjct: 231 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG---TVKLWDL 287

Query: 133 DSGTNVGEF-----DGHSRRVLSCAFKPSRPFRIATCGED 167
            +G  +         G    V       ++    A    +
Sbjct: 288 KTGEFIRNLVTLESGGSGGVVWRIRASNTKLV-CAVGSRN 326

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 9e-16
 Identities = 42/334 (12%), Positives = 88/334 (26%), Gaps = 19/334 (5%)

Query: 154 KPSRPFRIATCGEDFLVNFYE------GPPFKFKLSHR-GHSNFVNCVRFSPDGSKFISV 206
           KP+  F +   G+   V F        G P   +  +   H   V  V  S    + +  
Sbjct: 10  KPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT-RHVYT 68

Query: 207 SSDKKGIIYDGKTADKIGELS--PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISE 264
                  ++D         +S          + +    PDG  ++      +  +WD++ 
Sbjct: 69  GGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAA 128

Query: 265 DNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHM 324
                  +  + + +     +                    +I   +   ++ ++     
Sbjct: 129 PTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGH 182

Query: 325 KNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSG 384
            +  +   ++ D   + +   D   V+           Q    SQI            + 
Sbjct: 183 TDGASCIDISNDGTKLWTGGLDN-TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAV 241

Query: 385 FDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVL--LRGAEVVS 442
                    L  ++          S    L  A      V    D+ +          + 
Sbjct: 242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF 301

Query: 443 TINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSI 476
                  V +  I+ D    + GS D K  VY +
Sbjct: 302 QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.8 bits (187), Expect = 9e-16
 Identities = 22/133 (16%), Positives = 42/133 (31%), Gaps = 6/133 (4%)

Query: 130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSN 189
                     +    + ++ S  + P+  +                     K     H +
Sbjct: 209 SWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSN--VEVLHVNKPDKYQLHLHES 266

Query: 190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL 249
            V  ++F+  G  F+S   D     +       I +         SV +   S D K ++
Sbjct: 267 CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYIV 322

Query: 250 TASADKSAKVWDI 262
           T S DK A V+++
Sbjct: 323 TGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 5e-14
 Identities = 38/302 (12%), Positives = 96/302 (31%), Gaps = 21/302 (6%)

Query: 55  EHAYPATVARFSPNGEWIASADVSGTVRIW----GAHNDHVLKKEFRVLSGRIDDLQWSP 110
            H         S     + +    G V++W      +   V + +       I   +  P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 111 DGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLV 170
           DG   +  G       +      +     E    +    + A  P      + C +  + 
Sbjct: 108 DG-CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIA 166

Query: 171 NFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPED 230
            +        +   +GH++  +C+  S DG+K  +   D     +D     + G    + 
Sbjct: 167 VWDLHNQTLVR-QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD----LREGRQLQQH 221

Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
                ++++ + P G+ +       + +V  +++ +  +L    +   S       +   
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLS-------LKFA 274

Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
           +   + V       ++ +         +  S    +V +  + ++D K I++ S D    
Sbjct: 275 YCGKWFVSTGKDNLLNAWRTPYGA--SIFQSKESSSVLSCDI-SVDDKYIVTGSGDKKAT 331

Query: 351 KW 352
            +
Sbjct: 332 VY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (167), Expect = 3e-13
 Identities = 55/331 (16%), Positives = 98/331 (29%), Gaps = 16/331 (4%)

Query: 194 VRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS 252
              + DG    +    D        + A +I  L     H   V AV+ S   + V T  
Sbjct: 15  FHVTADGQMQPVPFPPDALIGPGIPRHARQINTL----NHGEVVCAVTISNPTRHVYTGG 70

Query: 253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQND--FLVIVSLGGTISIFSA 310
                KVWDIS   +      L        D+ +  C    D   L++     T+SI+  
Sbjct: 71  -KGCVKVWDISHPGNKSPVSQLDCLNR---DNYIRSCKLLPDGCTLIVGGEASTLSIWDL 126

Query: 311 NDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI 370
                                 ++ D KV  S   DG I  W        +  +      
Sbjct: 127 AAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186

Query: 371 KC--FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVST 428
            C   +    ++ T G DN +    L+  +    +                +  + + S+
Sbjct: 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESS 246

Query: 429 DSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE 488
           +  V+ +   +          V +   A  G   +   +D  L  +              
Sbjct: 247 NVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI---FQS 303

Query: 489 KHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
           K   +V     S D     +G  +++A V++
Sbjct: 304 KESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 2/74 (2%)

Query: 490 HRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV 549
           H   V  ++++     F S   +     W         +     ++ +     S ++  +
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ--SKESSSVLSCDISVDDKYI 321

Query: 550 ATGSLDTCVIIYEI 563
            TGS D    +YE+
Sbjct: 322 VTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 6e-09
 Identities = 8/79 (10%), Positives = 23/79 (29%), Gaps = 4/79 (5%)

Query: 529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT- 587
            +  H + +  L ++       +   D  +  +            +      V     + 
Sbjct: 260 QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP---YGASIFQSKESSSVLSCDISV 316

Query: 588 DEHSVVSSGEDACVRVWRL 606
           D+  +V+   D    V+ +
Sbjct: 317 DDKYIVTGSGDKKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 7e-07
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 514 EAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKP---ASSR 570
           +A++   + R  +  N L H   +  +  S     V TG    CV +++I  P   +   
Sbjct: 31  DALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVS 89

Query: 571 MTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVW 604
                     +       +   +  G +A     
Sbjct: 90  QLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSI 123

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 8e-07
 Identities = 16/100 (16%), Positives = 26/100 (26%), Gaps = 13/100 (13%)

Query: 466 SQDGKLRVYSIRGDTLTEEAVLEK--------HRGAVSVIRYSPDVSMFASGDVNREAIV 517
           + DG+++      D L    +           H   V  +  S       +G       V
Sbjct: 18  TADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKV 76

Query: 518 WD----RVSREVKLKNMLYHTARINCLAWSPNNSMVATGS 553
           WD         V   + L     I      P+   +  G 
Sbjct: 77  WDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGG 116

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 3e-04
 Identities = 20/116 (17%), Positives = 37/116 (31%), Gaps = 4/116 (3%)

Query: 436 RGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGD---TLTEEAVLEKHRG 492
           R A  ++T+N    V A  I+        G   G ++V+ I      +   +        
Sbjct: 40  RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDN 98

Query: 493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSM 548
            +   +  PD      G       +WD  +   ++K  L  +A          +S 
Sbjct: 99  YIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK 154

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.3 bits (175), Expect = 1e-14
 Identities = 69/296 (23%), Positives = 122/296 (41%), Gaps = 29/296 (9%)

Query: 320 LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEE 379
           +SGH K +TALTV   +P  ++S SYDG I++W     +        ++ I      + +
Sbjct: 9   ISGHNKGITALTV---NP--LISGSYDGRIMEWSSSSMHQD-----HSNLIVSLDNSKAQ 58

Query: 380 IVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAE 439
             +S   +   +V+        +      +               +++ D  +++L+   
Sbjct: 59  EYSSISWDDTLKVNGITKHEFGSQPKVASANN--------DGFTAVLTNDDDLLILQSFT 110

Query: 440 VVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY 499
                ++R     SA++   +   +G ++G         D      +    R   S I  
Sbjct: 111 GDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISI 170

Query: 500 SPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC----------LAWSPNNSMV 549
           SP  +  A+GDV  + +++D  SREVK     + T++IN                   +V
Sbjct: 171 SPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLV 230

Query: 550 ATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWR 605
           ATGSLDT + IY + +P      +   H  GV  L +    ++VSSG DAC++ W 
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNA-HKDGVNNLLWETPSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.0 bits (138), Expect = 8e-10
 Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 184 HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
                          +     + S D    IY  K   KI  +   + HK  V  + W  
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI--IKALNAHKDGVNNLLWET 268

Query: 244 DGKQVLTASADKSAKVWDI 262
               ++++ AD   K W++
Sbjct: 269 PST-LVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.0 bits (104), Expect = 1e-05
 Identities = 9/64 (14%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 500 SPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVI 559
             +  + A+G ++    ++        +K +  H   +N L W   +  + +   D C+ 
Sbjct: 224 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIK 282

Query: 560 IYEI 563
            + +
Sbjct: 283 RWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 40/302 (13%), Positives = 73/302 (24%), Gaps = 34/302 (11%)

Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI 115
           H    T    +P    + S    G +  W            +  S  I  L  S      
Sbjct: 12  HNKGITALTVNP----LISGSYDGRIMEWS------SSSMHQDHSNLIVSLDNSKAQE-- 59

Query: 116 VACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175
                            D+    G            A   +  F      +D L+     
Sbjct: 60  ----------YSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSF 109

Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS 235
                K            +  +         ++ +   + D + +  +     +   +  
Sbjct: 110 TGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-----KTPLRAK 164

Query: 236 VYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW---- 291
              +S SP    +          ++D+        +     S    +             
Sbjct: 165 PSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 224

Query: 292 -QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
            + D +   SL   I I+S     K    L+ H   V  L      P  ++SS  D  I 
Sbjct: 225 IEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWE--TPSTLVSSGADACIK 282

Query: 351 KW 352
           +W
Sbjct: 283 RW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 8/73 (10%), Positives = 21/73 (28%), Gaps = 6/73 (8%)

Query: 61  TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD 120
                    + +A+  +   + I+       + K        +++L W      + +  D
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278

Query: 121 GKGKSLVRAFMWD 133
              K       W+
Sbjct: 279 ACIK------RWN 285

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 3e-14
 Identities = 54/388 (13%), Positives = 123/388 (31%), Gaps = 37/388 (9%)

Query: 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSV 236
           P +  L  RGH   V       + +  I+ + DK   +YD      + +LS   GH G V
Sbjct: 3   PQRTTL--RGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLS---GHDGGV 56

Query: 237 YAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL 296
           +A+ ++  G  +++ S D++ +VWDI +     + +    +    V  + +       ++
Sbjct: 57  WALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST----VRCLDIVEYKNIKYI 111

Query: 297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGI 356
           V  S   T+ ++     E S                   +P  +         V+ + G 
Sbjct: 112 VTGSRDNTLHVWKLPK-ESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

Query: 357 GYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSV 416
           G            I    + +  ++            L G      ++I           
Sbjct: 171 GN-----------IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-------- 211

Query: 417 ALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSI 476
                  +  S D+ + +           L+       +     + ++ +          
Sbjct: 212 --ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 269

Query: 477 RGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR 536
             D   + +    H    ++  +    ++  SG    +  +++  S ++   N+L    +
Sbjct: 270 ANDYSRKFS--YHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQ 326

Query: 537 INCLAWSPNNSMVATGSLDTCVIIYEID 564
           I  + +     +VA    D    +  +D
Sbjct: 327 IWSVNFKGKT-LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.8 bits (153), Expect = 2e-11
 Identities = 42/379 (11%), Positives = 111/379 (29%), Gaps = 35/379 (9%)

Query: 141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG 200
             GH   V++C         + T  +D ++  Y+    KF L   GH   V  ++++  G
Sbjct: 8   LRGHMTSVITCLQFEDN--YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG 65

Query: 201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVW 260
              +   S  + +            +            +    + K ++T S D +  VW
Sbjct: 66  --ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW 123

Query: 261 DISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQL 320
            + +++        +    G   D  +      +    V +                + +
Sbjct: 124 KLPKES--------SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVV 175

Query: 321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEI 380
           SG   N   +  +     + + S +   I   I        +    ++ I+ +     E+
Sbjct: 176 SGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL 235

Query: 381 VTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEV 440
           + +   +      L+       ++   GS     +                         
Sbjct: 236 MYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRK------------------- 276

Query: 441 VSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYS 500
                    ++A          ++   + +  +Y++R   L   A + K    +  + + 
Sbjct: 277 --FSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV-HANILKDADQIWSVNFK 333

Query: 501 PDVSMFASGDVNREAIVWD 519
              ++ A+ + + ++ +  
Sbjct: 334 GK-TLVAAVEKDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.1 bits (128), Expect = 2e-08
 Identities = 25/235 (10%), Positives = 68/235 (28%), Gaps = 14/235 (5%)

Query: 35  NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL-- 92
              SV      +   +  +     P  V     +   + +    G + + G++++ ++  
Sbjct: 127 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVW 186

Query: 93  ----KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRV 148
                K   +LSG  D +  +        C      + +R +  ++G  +    GH+   
Sbjct: 187 DVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTA-- 244

Query: 149 LSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSS 208
                      +                    +     H+N      F       +   S
Sbjct: 245 --LVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSD-NILVSGS 301

Query: 209 DKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263
           + +  IY+ ++   +   +        +++V++      V     D  + +  + 
Sbjct: 302 ENQFNIYNLRSGKLVH--ANILKDADQIWSVNFKGKT-LVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 20/116 (17%), Positives = 42/116 (36%), Gaps = 2/116 (1%)

Query: 453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVN 512
           + +  + +  I G+ D  +RVY            L  H G V  ++Y+    + +     
Sbjct: 17  TCLQFEDNYVITGADDKMIRVYDS--INKKFLLQLSGHDGGVWALKYAHGGILVSGSTDR 74

Query: 513 REAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPAS 568
              +   +      +      T R   +    N   + TGS D  + ++++ K +S
Sbjct: 75  TVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESS 130

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 16/124 (12%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 483 EEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW 542
           +   L  H  +V +     + +   +G  ++   V+D ++++  L  +  H   +  L +
Sbjct: 4   QRTTLRGHMTSV-ITCLQFEDNYVITGADDKMIRVYDSINKKF-LLQLSGHDGGVWALKY 61

Query: 543 SPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVR 602
           +    +V+  +  T  +        +       + +  +  + + +   +V+   D  + 
Sbjct: 62  AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLH 121

Query: 603 VWRL 606
           VW+L
Sbjct: 122 VWKL 125

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 4e-06
 Identities = 31/313 (9%), Positives = 80/313 (25%), Gaps = 14/313 (4%)

Query: 47  PLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDL 106
           P + ++ G      T         ++ +      +R++ + N   L  +     G +  L
Sbjct: 3   PQRTTLRGHMTSVITC--LQFEDNYVITGADDKMIRVYDSINKKFL-LQLSGHDGGVWAL 59

Query: 107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE 166
           +++  G+ +    D   +      +            +S        +      I T   
Sbjct: 60  KYAHGGILVSGSTDRTVR---VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116

Query: 167 DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL 226
           D  ++ ++ P       H    ++        +   F+ V       +        I   
Sbjct: 117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176

Query: 227 SPEDGH-------KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGS 279
              D         +     +      +   T    +  +    S D   ++         
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236

Query: 280 GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKV 339
             +                +            D      + S H  N++A+T   +   +
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296

Query: 340 ILSSSYDGLIVKW 352
           ++S S +     +
Sbjct: 297 LVSGS-ENQFNIY 308

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 2e-05
 Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 529 NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTD 588
              +HT       +  +++++ +GS +    IY +         I       ++ + F  
Sbjct: 277 FSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILK-DADQIWSVNFKG 334

Query: 589 EHSVVSSGEDACVRVWRL 606
           +  V +  +D    +  L
Sbjct: 335 KTLVAAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.6 bits (98), Expect = 9e-05
 Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 1/75 (1%)

Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI 115
           H   + +  F  +   + S        I+   +  ++       + +I  + +    L  
Sbjct: 281 HTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVA 339

Query: 116 VACGDGKGKSLVRAF 130
               DG+    +  F
Sbjct: 340 AVEKDGQSFLEILDF 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 30/326 (9%), Positives = 76/326 (23%), Gaps = 16/326 (4%)

Query: 37  RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF 96
           + + + D  N   +     H       +++  G  + S     TVR+W            
Sbjct: 33  KMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFE 91

Query: 97  RVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPS 156
              S            ++ +  G       +  +     ++V +        L       
Sbjct: 92  GHNSTVRCLDIVEYKNIKYIVTGSRDNT--LHVWKLPKESSVPDHGEEHDYPLVFHTPEE 149

Query: 157 RPFRIATCGE-DFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKF--------ISVS 207
            P+ +         V    G           ++  V  V                  ++ 
Sbjct: 150 NPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY 209

Query: 208 SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNH 267
             ++           I     E+G          +  G   L+     SA          
Sbjct: 210 DHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWD 269

Query: 268 GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNV 327
                         +  +     + +D +++       +I++    +     +      +
Sbjct: 270 ANDYSRKFSYHHTNLSAIT--TFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQI 327

Query: 328 TALTVLNIDPKVILSSSYDGLIVKWI 353
            ++        ++ +   DG     I
Sbjct: 328 WSVNFK--GKTLVAAVEKDGQSFLEI 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 71.8 bits (174), Expect = 5e-14
 Identities = 41/380 (10%), Positives = 92/380 (24%), Gaps = 40/380 (10%)

Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
             FSP     I+  S  +  I D      +     +      +  V    D K       
Sbjct: 8   EDFSPLDGDLIAFVSRGQAFIQDVSGTYVL-----KVPEPLRIRYVRRGGDTKVAFIHGT 62

Query: 254 D--KSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAN 311
                  ++D       K ++ L    + GVD      +  ND   I+++       +  
Sbjct: 63  REGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVI 122

Query: 312 DLEKSPLQLSGHMKNVTALTVLN-IDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI 370
           +  +  +     + + +                     I  +            + +   
Sbjct: 123 ERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDY 182

Query: 371 KCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDS 430
                 + + +       +       D+     S ++ S+P  + +    P    +   S
Sbjct: 183 APAFDADSKNLYYLSYRSLDPS---PDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRS 239

Query: 431 GVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKH 490
                                       G   +           ++          LE  
Sbjct: 240 MTS-----------------------EAGEYDLNDMYKRSSP-INVDPGDYRMIIPLESS 275

Query: 491 RGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVA 550
               SV  +    + +         + +D  +R+V           +  L  S +   V 
Sbjct: 276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE-----VKNNLTDLRLSADRKTVM 330

Query: 551 TGSLDTCVIIYEIDKPASSR 570
               D  +  + ++KP   R
Sbjct: 331 VRKDDGKIYTFPLEKPEDER 350

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 66.4 bits (160), Expect = 2e-12
 Identities = 15/178 (8%), Positives = 43/178 (24%), Gaps = 20/178 (11%)

Query: 107 QWSPDGLRIVACGDGKGKSL----VRAFMWDSGTNVGEFDGHSRRVLSCAFKP------S 156
            +  D   +               V  F ++  +                  P      +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 157 RPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD 216
             + +    +       +   ++  +         +        + +         + YD
Sbjct: 245 GEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYD 304

Query: 217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
            KT             K ++  +  S D K V+    D     + + +    + ++T+
Sbjct: 305 VKTR-------KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEK---PEDERTV 352

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.7 bits (140), Expect = 8e-10
 Identities = 34/332 (10%), Positives = 71/332 (21%), Gaps = 18/332 (5%)

Query: 31  ILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIA--SADVSGTVRIWGAHN 88
           I + +     I D+S    + +           R   + +            + I+    
Sbjct: 18  IAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT 75

Query: 89  DHVLKKE---FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHS 145
               K E     V +  +D                       +  + +        D   
Sbjct: 76  GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTI 135

Query: 146 RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFIS 205
                            T G             +   +    ++      F  D      
Sbjct: 136 SDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY 195

Query: 206 VSSDKKGIIYDGKTADKIGELSPE----DGHKGSVYAVSWSPDGKQVLTASADKSAKVWD 261
           +S        D    +   E+  +        GS       P          D +     
Sbjct: 196 LSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKR 255

Query: 262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCL-WQNDFLVIVSLGGTISIFSANDLEKSPLQL 320
            S  N       +       +    V        +       G +  +     +     +
Sbjct: 256 SSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK-----V 310

Query: 321 SGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
           +    N+T L + + D K ++    DG I  +
Sbjct: 311 TEVKNNLTDLRL-SADRKTVMVRKDDGKIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 58.3 bits (139), Expect = 9e-10
 Identities = 38/307 (12%), Positives = 77/307 (25%), Gaps = 26/307 (8%)

Query: 62  VARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGD 120
              FSP +G+ IA     G   I      +VLK        RI  ++   D       G 
Sbjct: 7   AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPE---PLRIRYVRRGGDTKVAFIHGT 62

Query: 121 GKGKSLVRAFMWDSGT-NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK 179
            +G  L    ++D  T    +F+ +   V +     +  F +       ++         
Sbjct: 63  REGDFL---GIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKP 119

Query: 180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD------KIGELSPEDGHK 233
             +        +     S +          K G               +  ++       
Sbjct: 120 TVIERS-REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTEN 178

Query: 234 GSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293
              YA ++  D K +   S        D    N    +    P     +           
Sbjct: 179 SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNF-SFEVVSKPFVIPLIPGSPNPTKLVP 237

Query: 294 DFLVIVSLGG--------TISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY 345
             +   +           +  I       +  + L   +   +   V          +  
Sbjct: 238 RSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV-PVHGEFAAYYQGAPE 296

Query: 346 DGLIVKW 352
            G+++K+
Sbjct: 297 KGVLLKY 303

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 55.6 bits (132), Expect = 7e-09
 Identities = 36/388 (9%), Positives = 86/388 (22%), Gaps = 62/388 (15%)

Query: 235 SVYAVSWSP-DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN 293
           S +A  +SP DG  +   S  + A + D+S      + K   P     V           
Sbjct: 4   SKFAEDFSPLDGDLIAFVSRGQ-AFIQDVSG---TYVLKVPEPLRIRYVR-------RGG 52

Query: 294 D--FLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVK 351
           D     I        +   +       +   ++ NV A+               +G    
Sbjct: 53  DTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAM-----------GVDRNGKFAV 101

Query: 352 WIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQP 411
                     +  +         + E  I      +    ++             +    
Sbjct: 102 VANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI 161

Query: 412 KDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKL 471
               +                         +         A A   D       S     
Sbjct: 162 HVYDMEGRKI-------------------FAATTENSHDYAPAFDADSKNLYYLSYRSLD 202

Query: 472 RVYSIRG-----DTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK 526
                       + +++  V+    G+ +  +  P      +G+ +   +        V 
Sbjct: 203 PSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD 262

Query: 527 LKNML------YHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGG 580
             +              +        +          ++ Y++     +           
Sbjct: 263 PGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------VKNN 316

Query: 581 VYGLAFT-DEHSVVSSGEDACVRVWRLT 607
           +  L  + D  +V+   +D  +  + L 
Sbjct: 317 LTDLRLSADRKTVMVRKDDGKIYTFPLE 344

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 41/376 (10%), Positives = 94/376 (25%), Gaps = 40/376 (10%)

Query: 152 AFKPSRPFRIATC--GEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD 209
            F P     IA    G+ F+ +       K           +  VR   D        + 
Sbjct: 9   DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-----PEPLRIRYVRRGGDTKVAFIHGTR 63

Query: 210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN-HG 268
           +   +         G+    + + G+V+A+    +GK  + A+        D+       
Sbjct: 64  EGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTV 121

Query: 269 KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVT 328
             +          + D      +        + G  +      D+E   +  +    +  
Sbjct: 122 IERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHD 181

Query: 329 ALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNK 388
                + D K +   SY  L                   S           ++    +  
Sbjct: 182 YAPAFDADSKNLYYLSYRSLDPSP--------DRVVLNFSFEVVSKPFVIPLIPGSPNPT 233

Query: 389 IWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRF 448
                    + G  +  D+  +   ++V      +++    S                  
Sbjct: 234 KLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESS----------------IL 277

Query: 449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS 508
             +        +      + G L  Y ++   +TE       +  ++ +R S D      
Sbjct: 278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE------VKNNLTDLRLSADRKTVMV 331

Query: 509 GDVNREAIVWDRVSRE 524
              + +   +     E
Sbjct: 332 RKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 14/171 (8%), Positives = 36/171 (21%), Gaps = 15/171 (8%)

Query: 67  PNGEWIASADVSGTVRIWGAHN-DHVLKKEFRVL-----SGRIDDLQWSPDGLRIVA--- 117
            + + +                 +   +   +        G  +  +  P  +   A   
Sbjct: 188 ADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEY 247

Query: 118 -CGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP 176
              D   +S            +   +                       E  ++  Y+  
Sbjct: 248 DLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFA-AYYQGAPEKGVLLKYDVK 306

Query: 177 PFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS 227
             K         N +  +R S D    +    D K   +  +  +    + 
Sbjct: 307 TRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (170), Expect = 6e-14
 Identities = 54/291 (18%), Positives = 96/291 (32%), Gaps = 16/291 (5%)

Query: 62  VARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDG 121
           V     + + I S     T++IW  +      +  R+L+G    +       R++  G  
Sbjct: 18  VYCLQYDDQKIVSGLRDNTIKIWDKNT----LECKRILTGHTGSVLCLQYDERVIITGSS 73

Query: 122 KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK 181
                VR +  ++G  +     H   VL   F        +      + +         +
Sbjct: 74  DST--VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLR 131

Query: 182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSW 241
               GH   VN V F       +S S D+   +++  T + +  L   +GHK  +     
Sbjct: 132 RVLVGHRAAVNVVDFDDKY--IVSASGDRTIKVWNTSTCEFVRTL---NGHKRGIA--CL 184

Query: 242 SPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL 301
               + V++ S+D + ++WDI      ++ +           D         D  + V  
Sbjct: 185 QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWD 244

Query: 302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
                   A         L  H   V  L     D   I+SSS+D  I+ W
Sbjct: 245 LVAALDPRAPAGTLCLRTLVEHSGRVFRLQ---FDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 5e-10
 Identities = 31/189 (16%), Positives = 68/189 (35%), Gaps = 16/189 (8%)

Query: 79  GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV 138
            ++ +W   +   +     ++  R        D   IV+    +    ++ +   +   V
Sbjct: 115 RSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDR---TIKVWNTSTCEFV 171

Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSP 198
              +GH R +    +   R   + +   D  +  ++           GH   V C+RF  
Sbjct: 172 RTLNGHKRGIACLQY---RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDN 228

Query: 199 DGSKFISVSSDKKGIIYDGKTADKIGELSPE------DGHKGSVYAVSWSPDGKQVLTAS 252
              + +S + D K  ++D   A      +          H G V+ + +  D  Q++++S
Sbjct: 229 K--RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSS 284

Query: 253 ADKSAKVWD 261
            D +  +WD
Sbjct: 285 HDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.5 bits (124), Expect = 5e-08
 Identities = 40/294 (13%), Positives = 87/294 (29%), Gaps = 16/294 (5%)

Query: 319 QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEE 378
           ++    +    +  L  D + I+S   D  I  W +      ++       + C    E 
Sbjct: 7   RIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDER 66

Query: 379 EIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGA 438
            I+T   D+ +    +   +          +                  + +   +    
Sbjct: 67  VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPT 126

Query: 439 EVVSTINLRF-PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVI 497
           ++     L       + +  D    +  S D  ++V++      T E V   +     + 
Sbjct: 127 DITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTS----TCEFVRTLNGHKRGIA 182

Query: 498 RYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTC 557
                  +  SG  +    +WD           +             +N  + +G+ D  
Sbjct: 183 CLQYRDRLVVSGSSDNTIRLWDIECGACL---RVLEGHEELVRCIRFDNKRIVSGAYDGK 239

Query: 558 VIIYEIDKPASSRMTIKG-------AHLGGVYGLAFTDEHSVVSSGEDACVRVW 604
           + ++++      R             H G V+ L F DE  +VSS  D  + +W
Sbjct: 240 IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 6e-07
 Identities = 50/287 (17%), Positives = 92/287 (32%), Gaps = 22/287 (7%)

Query: 287 VGCL-WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY 345
           V CL + +  +V      TI I+  N LE     L+GH  +V  L   +    +  SS  
Sbjct: 18  VYCLQYDDQKIVSGLRDNTIKIWDKNTLECK-RILTGHTGSVLCLQY-DERVIITGSSDS 75

Query: 346 DGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSI 405
              +     G      +   E      F        +      +W   +          +
Sbjct: 76  TVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVW--DMASPTDITLRRV 133

Query: 406 DIGSQPKDLSVALHYPELVLVSTDSGVVL--LRGAEVVSTINLRFPVTASAIAPDGSEAI 463
            +G +     V      +V  S D  + +      E V T+N       + +       +
Sbjct: 134 LVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYRDRLVV 192

Query: 464 IGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR 523
            GS D  +R++ I         +         V     D     SG  + +  VWD V+ 
Sbjct: 193 SGSSDNTIRLWDIE----CGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 248

Query: 524 EVK--------LKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE 562
                      L+ ++ H+ R+  L +      + + S D  ++I++
Sbjct: 249 LDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.3 bits (113), Expect = 1e-06
 Identities = 46/301 (15%), Positives = 88/301 (29%), Gaps = 29/301 (9%)

Query: 184 HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP 243
               S  V C     D  K +S   D    I+D  T +    L+   GH GSV  + +  
Sbjct: 11  RSETSKGVYC--LQYDDQKIVSGLRDNTIKIWDKNTLECKRILT---GHTGSVLCLQYDE 65

Query: 244 DGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGG 303
                              S      +      +      + ++   + N  +V  S   
Sbjct: 66  ----------RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDR 115

Query: 304 TISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQ 363
           +I+++         L+            V++ D K I+S+S D  I  W        +  
Sbjct: 116 SIAVWDMASPTDITLRRVLVGHRAAV-NVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTL 174

Query: 364 RKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL 423
                 I C    +  +V+   DN I    ++   C     +  G +     +      +
Sbjct: 175 NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGAC---LRVLEGHEELVRCIRFDNKRI 231

Query: 424 VLVSTDSGVVL--LRGAEVVSTINLRFPVTA--------SAIAPDGSEAIIGSQDGKLRV 473
           V  + D  + +  L  A           +            +  D  + +  S D  + +
Sbjct: 232 VSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILI 291

Query: 474 Y 474
           +
Sbjct: 292 W 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 7e-06
 Identities = 20/147 (13%), Positives = 43/147 (29%), Gaps = 12/147 (8%)

Query: 33  YTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL 92
            +  R++ + + S    V     + +   +A        + S     T+R+W       L
Sbjct: 154 ASGDRTIKVWNTSTCEFVRTL--NGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACL 211

Query: 93  KKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK-----SLVRAFMWDSGTNVGEFDGHSRR 147
           +         +       +   +    DGK K     + +          +     HS R
Sbjct: 212 RVLEGH--EELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGR 269

Query: 148 VLSCAFKPSRPFRIATCGEDFLVNFYE 174
           V    F      +I +   D  +  ++
Sbjct: 270 VFRLQFDEF---QIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 8e-06
 Identities = 40/298 (13%), Positives = 94/298 (31%), Gaps = 26/298 (8%)

Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
                VY + +  D +++++   D + K+WD +     + K+ LT           V CL
Sbjct: 13  ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNT---LECKRILTGHTGS------VLCL 61

Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
             ++ ++I     +       +  +    L  H + V  L   N             +  
Sbjct: 62  QYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWD 121

Query: 351 KWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQ 410
                     ++     + +      ++ IV++  D  I   +    +        +   
Sbjct: 122 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEF----VRTLNGH 177

Query: 411 PKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII--GSQD 468
            + ++   +   LV+  +    + L   E  + + +                 I  G+ D
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYD 237

Query: 469 GKLRVYSIRGDTLTEE-------AVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
           GK++V+ +                 L +H G V  +++        S   +   ++WD
Sbjct: 238 GKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 70.7 bits (171), Expect = 1e-13
 Identities = 57/406 (14%), Positives = 101/406 (24%), Gaps = 56/406 (13%)

Query: 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS---PEDGHKGSVYAVSW 241
           + H   +  V         +S S D    ++D K  D             HK  ++ V  
Sbjct: 11  KAHDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68

Query: 242 -------SPDGKQVLTASADKSAKVWDISEDNHGK---------LKKTLTPSGSGGVDDM 285
                  + +   V T S       + I+ ++  K         L   +       +   
Sbjct: 69  LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128

Query: 286 LVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI----- 340
                  +  LV   + GT  I+  +        L+ +      L      P        
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFAT 188

Query: 341 -LSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQC 399
            +  S  GLI          G +Q  E S ++     E +       N I  V       
Sbjct: 189 SVDISERGLIATG----FNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGS 244

Query: 400 GYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDG 459
             A + D  S          + E +   +            +        V + +    G
Sbjct: 245 LLAIAHDSNSFGCITLYETEFGERIGSLSVPTH---SSQASLGEFAHSSWVMSLSFNDSG 301

Query: 460 SEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV----IRYSPDVSMFASGDVNREA 515
                   DGKLR + ++  T      L  H   + +    +         A   V    
Sbjct: 302 ETLCSAGWDGKLRFWDVK--TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFD-V 358

Query: 516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIY 561
               +  R                   +  N  +    LD  +  +
Sbjct: 359 KFLKKGWRSG---------------MGADLNESLCCVCLDRSIRWF 389

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.7 bits (166), Expect = 5e-13
 Identities = 53/408 (12%), Positives = 116/408 (28%), Gaps = 46/408 (11%)

Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGK-----LKKTLTPS 277
           I   +    H   +++VS        ++ S D   KVWD    ++           +  S
Sbjct: 4   IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKS 61

Query: 278 GSGGVDDMLVGCLWQNDFLVIVSLG--GTISIFSANDLEKSPLQLSGHMKNVTALTVLNI 335
           G   VD +        +  ++ +    G +  +     +++   +   +  + +    + 
Sbjct: 62  GLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS 121

Query: 336 DPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQ 395
              +   +S D L+   +      G     +        +    +  S        V   
Sbjct: 122 FWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD-ESNSLTLNWSPTLELQGTVESP 180

Query: 396 GDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI 455
                +A S+DI S+   ++   +   + +    +   L       S IN    + +   
Sbjct: 181 MTPSQFATSVDI-SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239

Query: 456 APDGSEAIIGSQDGKLRV--------------YSIRGDTLTEEAVLEKHRGAVSVIRYSP 501
           +P GS   I                        S+   +         H   V  + ++ 
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299

Query: 502 DVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARI----NCLAWSPNNSMVATGSLDTC 557
                 S   + +   WD  ++E  +  +  H   I    + LA   +   +A   +   
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKER-ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVF-- 356

Query: 558 VIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWR 605
                          +K    G   G+      S+     D  +R +R
Sbjct: 357 --------------DVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR 390

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 48/385 (12%), Positives = 101/385 (26%), Gaps = 70/385 (18%)

Query: 66  SPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRI-----------DDLQWSPDGLR 114
           S    +  S    G +++W          + +  S  +             ++     L 
Sbjct: 21  SACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC 80

Query: 115 IVACGDGKGKSLV--------RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPF----RIA 162
           +VA     G  L            +     ++ + D       +  +  S       R+ 
Sbjct: 81  LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLV 140

Query: 163 TCGEDFLVNFYEGPPFKFK------------------LSHRGHSNFVNCVRFSPDGSKFI 204
                     ++  PF  +                   S    S F   V  S  G    
Sbjct: 141 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIA 199

Query: 205 SVSSDKKGIIYDGKTADKIGELSPEDGHK---GSVYAVSWSPDGKQVLTASADKSAKVWD 261
           +  ++    I +  T   +     +        S+ +V +SP G  +  A    S     
Sbjct: 200 TGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCIT 259

Query: 262 ISEDNHGKLKKTLTPSGSGGVDDMLVG----------CLWQNDFLVIVSLGGTISIFSAN 311
           + E   G+   +L+         +                  + L      G +  +   
Sbjct: 260 LYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK 319

Query: 312 DLEKSPLQLSGHMKNV-TALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQI 370
             E+    L+ H  ++     +L +D      +      VK++           K+  + 
Sbjct: 320 TKERI-TTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFL-----------KKGWRS 367

Query: 371 KCFAAIEEEIVTSGFDNKI--WRVS 393
              A + E +     D  I  +R +
Sbjct: 368 GMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 4e-06
 Identities = 37/318 (11%), Positives = 77/318 (24%), Gaps = 53/318 (16%)

Query: 7   TYTCVPSTERGRGILISGHPKSNSILY-TNGRSVIILDLSNPLQVSIYGEHAYPATVARF 65
               +        ++ +     + + Y           +   L +       +     ++
Sbjct: 68  VLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKW 127

Query: 66  SPNGE-----WIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQ------------- 107
             + +      + + DV GT  IW  H          +      +LQ             
Sbjct: 128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFA 187

Query: 108 ----WSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT 163
                S  GL      +G  +    + +        +    +      + K S    +  
Sbjct: 188 TSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLA 247

Query: 164 CGED-----------------FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISV 206
              D                            +  L    HS++V  + F+  G    S 
Sbjct: 248 IAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA 307

Query: 207 SSDKKGIIYDGKTADKIGELSPEDGHKGSVY----AVSWSPDGKQVLTASADKSAKVWDI 262
             D K   +D KT ++I  L   + H   +      ++    G  +          V+D+
Sbjct: 308 GWDGKLRFWDVKTKERITTL---NMHCDDIEIEEDILAVDEHGDSLAEPG------VFDV 358

Query: 263 SEDNHGKLKKTLTPSGSG 280
                G            
Sbjct: 359 KFLKKGWRSGMGADLNES 376

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.2 bits (92), Expect = 6e-04
 Identities = 11/87 (12%), Positives = 29/87 (33%), Gaps = 14/87 (16%)

Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEI---DKPASSRMTIKG-AHLGGVYGLAF-- 586
           H A I  ++   +     + S D  + +++    D       +     H  G++ +    
Sbjct: 13  HDADIFSVSACNS--FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQ 70

Query: 587 ------TDEHSVVSSGEDACVRVWRLT 607
                  +   V ++     +  +R+T
Sbjct: 71  AIERDAFELCLVATTSFSGDLLFYRIT 97

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.5 bits (168), Expect = 2e-13
 Identities = 32/340 (9%), Positives = 89/340 (26%), Gaps = 26/340 (7%)

Query: 186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG 245
              ++++ ++  P  S  +  S D    +Y      K  +L     +K  +   ++  + 
Sbjct: 9   APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNT 68

Query: 246 KQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI 305
              +        ++  +        +       + G+  +      +        L   I
Sbjct: 69  DLQI-YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVI 127

Query: 306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRK 365
              +  D   +   L+ +                            +         +   
Sbjct: 128 DPRNYGDGVIAVKNLNSNN--------------------TKVKNKIFTMDTNSSRLIVGM 167

Query: 366 ENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHY--PEL 423
            NSQ++ F     E      +    +  ++                 D  VA+ +   + 
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE 483
              ++            +   NL +PV +   +P          DG +  +++   T  +
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNL--QTRKK 285

Query: 484 EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR 523
                K     SV++ +   ++      +        + +
Sbjct: 286 IKNFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 62.2 bits (149), Expect = 4e-11
 Identities = 22/305 (7%), Positives = 71/305 (23%), Gaps = 19/305 (6%)

Query: 64  RFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL--SGRIDDLQWSPDGLRIVACGDG 121
           +  P+   +      G++ ++            + L     +    +  +    +  G  
Sbjct: 18  KIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV 77

Query: 122 KGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK 181
           +G+ L    +          +  +  +             A+      V           
Sbjct: 78  QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVI 137

Query: 182 LSHRGH----SNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDG-HKGSV 236
                +               + S+ I   ++ +   +     +       E G      
Sbjct: 138 AVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR 197

Query: 237 YAVSWSPDGKQVLTASADKSAKVWDI---------SEDNHGKLKKTLTPSGSGGVDDMLV 287
                  + +    +S D    V            S+    +  +      +       +
Sbjct: 198 DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSI 257

Query: 288 GCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDG 347
               ++ FL      G IS ++     +  ++        + + +      ++  ++ D 
Sbjct: 258 EFSPRHKFLYTAGSDGIISCWNLQT--RKKIKNFAKFNEDSVVKI-ACSDNILCLATSDD 314

Query: 348 LIVKW 352
                
Sbjct: 315 TFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.8 bits (148), Expect = 6e-11
 Identities = 15/94 (15%), Positives = 30/94 (31%), Gaps = 4/94 (4%)

Query: 173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGH 232
           +     +  L     +  VN + FSP      +  SD     ++ +T  KI   +     
Sbjct: 236 FAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA----K 291

Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDN 266
                 V  +     +  A++D + K     +  
Sbjct: 292 FNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT 325

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.8 bits (122), Expect = 1e-07
 Identities = 11/79 (13%), Positives = 29/79 (36%), Gaps = 3/79 (3%)

Query: 486 VLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD--RVSREVKLKNMLYHTARINCLAWS 543
           + +  +  +S I+  P  S+      +    V+     ++ V L   L +   + C  + 
Sbjct: 6   IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFI 65

Query: 544 PNNS-MVATGSLDTCVIIY 561
            N    +  G++   ++  
Sbjct: 66  DNTDLQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 9e-07
 Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 533 HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA-HLGGVYGLAF--TDE 589
               I+ +   P+ S++   S D  + +Y+ D  A +   ++   +   +    F    +
Sbjct: 10  PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTD 69

Query: 590 HSVVSSGEDACVRVW 604
             +        +   
Sbjct: 70  LQIYVGTVQGEILKV 84

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 39/341 (11%), Positives = 99/341 (29%), Gaps = 44/341 (12%)

Query: 80  TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACG-DGKGKSLVRAFMWDSGTNV 138
            V+I  A  D             I D++  P    ++    DG     +  + +D     
Sbjct: 3   IVQIEQAPKD------------YISDIKIIPSKSLLLITSWDGS----LTVYKFDIQAKN 46

Query: 139 GEF---DGHSRRVLSCAFKPSRPFRIATCGE--DFLVNFYEGPPFKFKLSHRGHSNFVNC 193
            +      +   +L C F  +   +I       + L     G P    L++   +  +  
Sbjct: 47  VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106

Query: 194 VRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS--VYAVSWSPDGKQVLTA 251
           +    D     +       +I      D +  +   + +         +   +  +++  
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166

Query: 252 SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAN 311
             +   + + +          T+  SG       +     + +     S+ G +++   +
Sbjct: 167 MNNSQVQWFRL--PLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD 224

Query: 312 DLE--------------KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW-IQGI 356
           D                +  L+ +     V ++   +   K + ++  DG+I  W +Q  
Sbjct: 225 DQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF-SPRHKFLYTAGSDGIISCWNLQTR 283

Query: 357 GYGGKLQRKENSQIKCFAAIEEEIVTSGFDN--KIWRVSLQ 395
                  +     +   A  +  +  +  D+  K      Q
Sbjct: 284 KKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQ 324

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (85), Expect = 0.003
 Identities = 25/187 (13%), Positives = 50/187 (26%), Gaps = 40/187 (21%)

Query: 53  YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDG 112
            G       VA      E  A + + G V +    +                        
Sbjct: 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDD------------------------ 225

Query: 113 LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF 172
                   G   +  + F +       +    +  V S  F P   F + T G D +++ 
Sbjct: 226 -------QGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKF-LYTAGSDGIISC 277

Query: 173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGH 232
           +     K K+ +    N  + V+ +   +     +SD                    + +
Sbjct: 278 WNLQTRK-KIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA-------AIDQTIELN 329

Query: 233 KGSVYAV 239
             S+Y +
Sbjct: 330 ASSIYII 336

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 68.9 bits (166), Expect = 3e-13
 Identities = 46/295 (15%), Positives = 94/295 (31%), Gaps = 14/295 (4%)

Query: 231 GHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCL 290
           GH  ++ A+S S DGK + +A A+     WDIS    G   +      +  +  +     
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDIST---GISNRVFPDVHATMITGI---KT 63

Query: 291 WQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV 350
                L  VS    + +  A        +   +  +   L +       I  ++    I 
Sbjct: 64  TSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 123

Query: 351 KWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQ 410
            +  G     ++    NS     +  ++ +   G D+K+    L G       +I   ++
Sbjct: 124 IYSHGKLT--EVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181

Query: 411 PKDLSVALHYPELVLVSTDSGVVLLRGA------EVVSTINLRFPVTASAIAPDGSEAII 464
              ++ + +   LV       V+    A         S       V   + +PD      
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 465 GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD 519
           GS D  + V+++   +     +   H  +        + +   S   +     W+
Sbjct: 242 GSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 63.9 bits (153), Expect = 1e-11
 Identities = 65/292 (22%), Positives = 135/292 (46%), Gaps = 5/292 (1%)

Query: 320 LSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW-IQGIGYGGKLQRKENSQIKCFA-AIE 377
             GH K +TAL+  + D K + S+  +G I  W I              + I       +
Sbjct: 8   RYGHNKAITALSS-SADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66

Query: 378 EEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRG 437
            ++ T  +D+ +  V   G     + ++      + L +A+     + V+     + +  
Sbjct: 67  GDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYS 126

Query: 438 AEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVI 497
              ++ + + +  +  A++ D     +G QD K+ VY + G +++E   +       SV 
Sbjct: 127 HGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVA 186

Query: 498 RYSPDVSMFASGDVNREAIVWDRVSREV-KLKNMLYHTARINCLAWSPNNSMVATGSLDT 556
             +    + A+    +        + E+    +  +HTA++ C++WSP+N  +ATGSLD 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 557 CVIIYEIDKPASSRMTIKGAH-LGGVYGLAFTDEHSVVSSGEDACVRVWRLT 607
            VI++ ++KP+   + IKGAH +  V  + + +E ++VS+G+D+ ++ W + 
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 57.7 bits (137), Expect = 1e-09
 Identities = 13/83 (15%), Positives = 31/83 (37%), Gaps = 2/83 (2%)

Query: 526 KLKNMLY-HTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGL 584
            +  + Y H   I  L+ S +   + +   +  +  ++I    S+R      H   + G+
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNR-VFPDVHATMITGI 61

Query: 585 AFTDEHSVVSSGEDACVRVWRLT 607
             T +  + +   D  ++V    
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAG 84

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.4 bits (131), Expect = 6e-09
 Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 1/113 (0%)

Query: 151 CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDK 210
            +   +         +    +           S   H+  V CV +SPD  +  + S D 
Sbjct: 187 FSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDN 246

Query: 211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS 263
             I+++         +        SV +V W  +   +++A  D + K W++ 
Sbjct: 247 SVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (129), Expect = 1e-08
 Identities = 32/297 (10%), Positives = 73/297 (24%), Gaps = 13/297 (4%)

Query: 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
            GH+  +  +  S DG    S  ++     +D  T          D H   +  +  +  
Sbjct: 9   YGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP--DVHATMITGIKTTSK 66

Query: 245 GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT 304
              + T S D   KV           K          +    +G     D  + V+    
Sbjct: 67  -GDLFTVSWDDHLKVVPAGGSGVDSSKAVANK-----LSSQPLGLAVSADGDIAVAACYK 120

Query: 305 ISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR 364
                ++                 +     +      S  +   +               
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELV 424
           +  S                     + V+   +     +     ++   +S +     L 
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 425 LVSTDSGVVL--LRGAEVVSTINLR---FPVTASAIAPDGSEAIIGSQDGKLRVYSI 476
             S D+ V++  +        I           S I  + +  +   QD  ++ +++
Sbjct: 241 TGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (118), Expect = 3e-07
 Identities = 16/121 (13%), Positives = 34/121 (28%)

Query: 484 EAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWS 543
           + V   H  A++ +  S D     S D       WD  +          H   I  +  +
Sbjct: 5   DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT 64

Query: 544 PNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRV 603
               +      D   ++        S   +         GLA + +  +  +     + +
Sbjct: 65  SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAI 124

Query: 604 W 604
           +
Sbjct: 125 Y 125

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.0 bits (117), Expect = 3e-07
 Identities = 34/297 (11%), Positives = 79/297 (26%), Gaps = 12/297 (4%)

Query: 56  HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRI 115
           H    T    S +G+ + SAD  G +  W        +    V +  I  ++ +  G   
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF 70

Query: 116 VACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175
               D   K      +   G+ V      + ++ S     +              +    
Sbjct: 71  TVSWDDHLK-----VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIY 125

Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS 235
              K       +++    +             S        G +  ++  +         
Sbjct: 126 SHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSV 185

Query: 236 VYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF 295
            ++ + +       +       +        +                   V     N  
Sbjct: 186 AFSNNGAFLVATDQS-------RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238

Query: 296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
           L   SL  ++ +++ N     P+ + G     +  +V+ ++   I+S+  D  I  W
Sbjct: 239 LATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 66.7 bits (162), Expect = 3e-12
 Identities = 46/358 (12%), Positives = 96/358 (26%), Gaps = 32/358 (8%)

Query: 189 NFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD--KIGELSPEDGHKGSVYAVSWSPDGK 246
             V+  R S  G     +  D K  + D    +   + E+      +    +     + K
Sbjct: 62  YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDK 121

Query: 247 QVL-TASADKSAKVWDISED---NHGKLKKTLTPSGSGGVDDMLVGCLWQND---FLVIV 299
             +  A       + D            +           +  +   L  +    F+V V
Sbjct: 122 YAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 181

Query: 300 SLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG 359
              G I +    DL           + +    +       I +++    +V      G  
Sbjct: 182 KETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKL 241

Query: 360 GKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALH 419
             ++                  T G       +       G  +   IG+ P+       
Sbjct: 242 VAIEDTGGQTPHPGRGANFVHPTFGPVWATSHM-------GDDSVALIGTDPEGHPDNAW 294

Query: 420 YPELVLVSTDSGVVLLRGAE------VVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRV 473
                  +   G + ++         V +T+N    ++ S    D         D + + 
Sbjct: 295 KILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKT 354

Query: 474 YSIRGDTLTEEAVLEKHRGAVSVIRYSPD-----VSMFASGDVNREAIVWDRVSREVK 526
             I      E A + + +  V    ++ D      S++   D     +V D  + E+K
Sbjct: 355 LPI-----AEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELK 407

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (123), Expect = 1e-07
 Identities = 33/216 (15%), Positives = 56/216 (25%), Gaps = 17/216 (7%)

Query: 53  YGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDG 112
           Y      A +       E+I +   +G + +    + + LK         + D       
Sbjct: 159 YHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSH 218

Query: 113 -LRIVACGDGKGKSLVRAFMWDSGTN--VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFL 169
              I A        ++             G    H  R  +       P    +   D  
Sbjct: 219 RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDS 278

Query: 170 VNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE 229
           V      P      H  ++  +     +  G      +      +Y   T      L+PE
Sbjct: 279 VALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT------LNPE 328

Query: 230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISED 265
               GSV       D K +    +D   K   I+E 
Sbjct: 329 AEISGSVA----VFDIKAMTGDGSDPEFKTLPIAEW 360

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.9 bits (121), Expect = 3e-07
 Identities = 41/297 (13%), Positives = 78/297 (26%), Gaps = 28/297 (9%)

Query: 11  VPSTERGRGILISGHPKSNSILYTNGRS--VIILDLSNPLQVSIYGEHAYPATVARFSPN 68
           V   +R    +     + N    T   +  + ++D S     ++           R S +
Sbjct: 15  VAPEDRPTQQMNDWDLE-NLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHIS-RLSAS 72

Query: 69  GEWIASADVSGTVRIWGAHNDHVLK-KEFRVLSGRID---DLQWSPDGLRIVACG----- 119
           G ++      G V +            E ++ S             +    +A       
Sbjct: 73  GRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ 132

Query: 120 ----DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGED--FLVNFY 173
               DG+     +       T   +      RV +      RP  I    E    L+  Y
Sbjct: 133 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDY 192

Query: 174 EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL--SPEDG 231
                  K +      F++          FI+ ++ +  ++       K+  +  +    
Sbjct: 193 TDLNNL-KTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 251

Query: 232 HKGSVYAVSWSPDGKQVLTASADKSAKVWDIS------EDNHGKLKKTLTPSGSGGV 282
                 A    P    V   S      V  I        DN  K+  +    G G +
Sbjct: 252 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSL 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 59.0 bits (141), Expect = 4e-10
 Identities = 31/334 (9%), Positives = 74/334 (22%), Gaps = 35/334 (10%)

Query: 203 FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL-TASADKSAKVWD 261
            ++ +   K ++ D +       +        +      +P G+    T +  +S    D
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 262 ISEDNHGKLKKTLTPSGSGGV--------DDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
           +            TP              D   +        L +       +  +  D 
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 314 EKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGI----------------- 356
           E    + +        +     D   +     D  ++    G                  
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQ 182

Query: 357 ------GYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQ 410
                     +      +         +    + +   +  + L+  +        +   
Sbjct: 183 PDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVF 242

Query: 411 PKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGK 470
               +V                  L     +  + L     +  ++ DGS   +G   G 
Sbjct: 243 YFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGD 302

Query: 471 LRVYSIRGDTLTEEAVL--EKHRGAVSVIRYSPD 502
           L  Y         +  L         SV  ++ D
Sbjct: 303 LAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 32/278 (11%), Positives = 68/278 (24%), Gaps = 38/278 (13%)

Query: 34  TNGRSVIILDLSNPLQVSIYGEHAYPATVAR-----FSPNGEWIASADVSGTVRIWGAHN 88
               S++ +DL     +           V        SP+G+ +A  +    + +     
Sbjct: 53  NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112

Query: 89  DHVLKKEFRVLSGR----------IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNV 138
                  +   +            I  L W+ DG ++   G         A        +
Sbjct: 113 QPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPI 172

Query: 139 GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRG------HSNFVN 192
             ++  +          ++          F     +  P        G       +  + 
Sbjct: 173 QSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA 232

Query: 193 CVRFSPDGSKFISVSSDKKGI----------IYDGKTADKIGELSPEDGHKGSVYAVSWS 242
                     + S + +               +D +    I  +        S Y+V+ S
Sbjct: 233 MREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVS 288

Query: 243 PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSG 280
            DG  V    A      +D       + K  +   G+ 
Sbjct: 289 TDGSTVWLGGALGDLAAYDA---ETLEKKGQVDLPGNA 323

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 28/221 (12%), Positives = 52/221 (23%), Gaps = 24/221 (10%)

Query: 43  DLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGR 102
           D     +   +        +A ++ +G  +        V    A      K     +   
Sbjct: 121 DAETLSRRKAFEAPRQITMLA-WARDGSKLYGLGRDLHVMDPEAGTLVEDKP----IQSW 175

Query: 103 IDDLQWSPDGLRIVACGDGKGKSLVR--AFMWDSGT--------NVGEFDGHSRRVLSCA 152
             +    PD L +    +  G           D            +   D  +  +    
Sbjct: 176 EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMRE 235

Query: 153 FKPSRP--FRIATCGEDFLVNFYEGPPFKFKLSHR------GHSNFVNCVRFSPDGSKFI 204
            +      F  A                 F L            +    V  S DGS   
Sbjct: 236 VRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVW 295

Query: 205 SVSSDKKGIIYDGKTADKIGELS-PEDGHKGSVYAVSWSPD 244
              +      YD +T +K G++  P +          ++ D
Sbjct: 296 LGGALGDLAAYDAETLEKKGQVDLPGNASMSLASVRLFTRD 336

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 5e-07
 Identities = 28/310 (9%), Positives = 65/310 (20%), Gaps = 32/310 (10%)

Query: 70  EWIASADVSGTVRIWGAHNDHVLKK-EFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR 128
           ++I +      + +       V K                +P G    A  +      + 
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSES--LV 59

Query: 129 AFMWDSGTNVGEFDGHS-----RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-- 181
                +G  +G  D  +     + +   A  P             L   +          
Sbjct: 60  KIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119

Query: 182 --------LSHRGHSNFVNCVRFSPDGSKFISVSSDKK-GIIYDGKTADKIGELSPEDGH 232
                            +  + ++ DGSK   +  D        G   +     S E   
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 233 KGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL----------TPSGSGGV 282
                 ++     +     +        DI   +    +  L                 +
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM 239

Query: 283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS 342
           D                     +  F         ++      +  ++ V + D   +  
Sbjct: 240 DVFYFSTAVNPAKTRAFGAYNVLESFDLEKNA--SIKRVPLPHSYYSVNV-STDGSTVWL 296

Query: 343 SSYDGLIVKW 352
               G +  +
Sbjct: 297 GGALGDLAAY 306

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 58.2 bits (139), Expect = 1e-09
 Identities = 33/342 (9%), Positives = 77/342 (22%), Gaps = 48/342 (14%)

Query: 196 FSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL-TASAD 254
                   I  +      + D  +             K        +PD +      +  
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSC--VMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 255 KSAKVWDISEDN-HGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS---- 309
                 D+           +  P   G             +    V+    ++       
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 310 --------ANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGI----- 356
                   A+ LE  P++     + V  +     D  + ++      +            
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRA-ADDGSLYVAGPDIYKMDVKTGKYTVALP 180

Query: 357 -------------------GYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGD 397
                                  + +      I  F   +++  T+        V L+  
Sbjct: 181 LRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG 240

Query: 398 QCGYANSIDIGSQPKDLSVALHYPELVLVSTDSG---VVLLRGAEVVSTINLRFPVTASA 454
           +                +      +   +           L+  +++   NL       A
Sbjct: 241 KT--HTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVA 298

Query: 455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSV 496
               G +  +G     L V++   DTL +   ++   G +S 
Sbjct: 299 FDKKGDKLYLGGTFNDLAVFNP--DTLEKVKNIKLPGGDMST 338

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 2e-08
 Identities = 36/324 (11%), Positives = 72/324 (22%), Gaps = 45/324 (13%)

Query: 65  FSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK 124
                E++   +    + +    +D V K               +PD        +  G 
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 125 ----SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKP-SRPFRIATCGEDFLVNFYEGPPFK 179
                L                   R + S A  P  +           L + Y   P +
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 180 FK------------LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI---- 223
            +            +        V  +R + DGS +++     K  +  GK    +    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 224 ---------------GELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHG 268
                             SP            +  D +   TA         D+      
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTG--- 240

Query: 269 KLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVT 328
              KT T   +   +    G     D   I  +   ++ +     +        H     
Sbjct: 241 ---KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDH--TYY 295

Query: 329 ALTVLNIDPKVILSSSYDGLIVKW 352
            +   +     +        +  +
Sbjct: 296 CVAF-DKKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 24/342 (7%), Positives = 82/342 (23%), Gaps = 38/342 (11%)

Query: 239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVI 298
            +     + ++  +   +  V D++      + K+       G    ++     N    +
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVAS---DTVYKSCVMPDKFGPGTAMMA--PDNRTAYV 56

Query: 299 V-SLGGTISIFSANDLE-----KSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIV-- 350
           + +  G I     +  +               +++ +  +     +V  + +    +   
Sbjct: 57  LNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH 116

Query: 351 --KWIQGIGYGGKLQRKENSQIKCFAAIEE-EIVTSGFDNKIWRVSLQGDQCGYAN---- 403
                  +         E   ++ F    +  ++ +  D  ++       +         
Sbjct: 117 YVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYT 176

Query: 404 -SIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEA 462
            ++ + +  +    A          +                      T +    D  + 
Sbjct: 177 VALPLRNWNRKGYSAPDVLYFWPHQSPRHEF-------------SMLYTIARFKDDKQDP 223

Query: 463 IIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVS 522
                        ++      +   +      + +R   D +             +D   
Sbjct: 224 ATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVL--NRLAKYDLKQ 281

Query: 523 REVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEID 564
           R  KL           C+A+      +  G     + ++  D
Sbjct: 282 R--KLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 19/185 (10%), Positives = 39/185 (21%), Gaps = 10/185 (5%)

Query: 100 SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPF 159
              I  +        +        +    A                  + + A       
Sbjct: 162 GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQ 221

Query: 160 RIATCGEDFLVNFYEGPPFKFKLS-HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK 218
             AT    +     +    K         +        SP     I    ++     D K
Sbjct: 222 DPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY-DLK 280

Query: 219 TADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLT-PS 277
               I   +       + Y V++   G ++          V++       +  K +  P 
Sbjct: 281 QRKLIKAAN----LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDT---LEKVKNIKLPG 333

Query: 278 GSGGV 282
           G    
Sbjct: 334 GDMST 338

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 23/183 (12%), Positives = 47/183 (25%), Gaps = 48/183 (26%)

Query: 54  GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL 113
            E +   T+ARF  + +  A+AD+                +EF  L+        SP   
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264

Query: 114 RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY 173
             +                     + ++D   R+++                        
Sbjct: 265 NQIYGVLN---------------RLAKYDLKQRKLIK----------------------- 286

Query: 174 EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHK 233
                          +   CV F   G K     +     +++  T +K+  +    G  
Sbjct: 287 ----------AANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

Query: 234 GSV 236
            + 
Sbjct: 337 STT 339

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 53.3 bits (126), Expect = 4e-08
 Identities = 24/274 (8%), Positives = 51/274 (18%), Gaps = 27/274 (9%)

Query: 59  PATVARFSPNGEWI-----ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL 113
           P  +   +P+   +     A         +       V+     +  G + +   + DG 
Sbjct: 3   PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGFLPNPVVADDGS 59

Query: 114 RIVACGDGKGKSL-------VRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE 166
            I        +         V  F   +     + +            P           
Sbjct: 60  FIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKT 119

Query: 167 DFLVNFYEGPPFKFKLSHRG-----HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD 221
                F   P                        F      F     D         T  
Sbjct: 120 LLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEG 179

Query: 222 KIGELSP---EDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSG 278
                         +  +   ++S    +++  +        D+S  +     K L    
Sbjct: 180 TPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA----KFLPAVE 235

Query: 279 SGGVDDMLVGCLWQNDFLVIVSLGGTISIFSAND 312
           +    +   G        V             + 
Sbjct: 236 ALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQ 269

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 29/271 (10%), Positives = 74/271 (27%), Gaps = 42/271 (15%)

Query: 12  PSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEW 71
           P  +       S  P    +         +LD+ +   +       +         +G  
Sbjct: 115 PDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM----HCRDGSL 170

Query: 72  IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFM 131
              A  +              +         I+   +S    R+V      GK       
Sbjct: 171 AKVAFGTEGTPEI-----THTEVFHPEDEFLINHPAYSQKAGRLVWPTYT-GKIHQIDLS 224

Query: 132 WDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFV 191
                 +   +  +    +  ++P    ++A                        H    
Sbjct: 225 SGDAKFLPAVEALTEAERADGWRPGGWQQVA-----------------------YHRALD 261

Query: 192 NCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL-- 249
                     ++   ++ +  ++ D KT +++ +          + +++ S D K +L  
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE----MGHEIDSINVSQDEKPLLYA 317

Query: 250 TASADKSAKVWDISEDNHGKLKKTLTPSGSG 280
            ++ DK+  + D      G+  +++   G G
Sbjct: 318 LSTGDKTLYIHDAES---GEELRSVNQLGHG 345

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.9 bits (107), Expect = 9e-06
 Identities = 32/353 (9%), Positives = 84/353 (23%), Gaps = 53/353 (15%)

Query: 196 FSPDGSKFISVSSDKKGI-----IYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT 250
            +PD  +                + DG+    IG +       G +     + DG  +  
Sbjct: 9   PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG-----GFLPNPVVADDGSFIAH 63

Query: 251 ASA----------DKSAKVWDISEDNH-GKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIV 299
           AS               +V+D         ++    P    G    +         L+  
Sbjct: 64  ASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFY 123

Query: 300 SLGGTISIFSANDLEKSPLQL-------SGHMKNVTALTVLNIDPKVILSSSYDGLIVKW 352
                 ++   +   K+  ++                  +   D  +   +       + 
Sbjct: 124 QFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI 183

Query: 353 IQG----------------IGYGGKLQRKENSQIKCFAAIE--EEIVTSGFDNKIWRVSL 394
                                  G+L     +       +   +       +        
Sbjct: 184 THTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA 243

Query: 395 QGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSG---VVLLRGAEVVSTINLRFPVT 451
            G + G    +        + + +   +     T S    V+  +  E ++   +   + 
Sbjct: 244 DGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEID 303

Query: 452 ASAIAPDGSEAII--GSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD 502
           +  ++ D    +    + D  L ++     +  E   + +      VI  +  
Sbjct: 304 SINVSQDEKPLLYALSTGDKTLYIHDAE--SGEELRSVNQLGHGPQVITTADM 354

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.9 bits (123), Expect = 1e-07
 Identities = 17/246 (6%), Positives = 49/246 (19%), Gaps = 33/246 (13%)

Query: 57  AYPATVARFSPNGEWIASADVS-GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLR- 114
                +     +   +                     +      +         P     
Sbjct: 124 PRVHIIG-NCASSACLLFFLFGSSAAAGLSVPGASDDQL-----TKSASCFHIHPGAAAT 177

Query: 115 -IVACGDGKGK--SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVN 171
             +           L  A               +    +           A        +
Sbjct: 178 HYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD 237

Query: 172 FYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI-------- 223
                    K +  G+ +      F   G + ++   +  GI+       +         
Sbjct: 238 IPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT 296

Query: 224 -------GELSPEDGHKGSVYAVSWSPDGKQVL--TASADKSAKVWDISEDNHGKLKKTL 274
                  G+ S    +     A+  + DG       ++  +   ++D +     + + ++
Sbjct: 297 SSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAAS---DQDQSSV 353

Query: 275 TPSGSG 280
                G
Sbjct: 354 -ELDKG 358

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 43.8 bits (102), Expect = 3e-05
 Identities = 35/361 (9%), Positives = 76/361 (21%), Gaps = 48/361 (13%)

Query: 143 GHSRRVLSCAFKPS--RPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDG 200
                           R               +                F++       G
Sbjct: 17  ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSG 76

Query: 201 SKFI----------SVSSDKKGIIYDGKTADKIGELSPEDGHK----GSVYAVSWSPDGK 246
           S F                    ++D  T   I ++   D  +      V+ +       
Sbjct: 77  SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA 136

Query: 247 QVLTAS-ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTI 305
            +L       +A    +         +    +    +               + S   ++
Sbjct: 137 CLLFFLFGSSAAAGLSVP---GASDDQLTKSASCFHIHP------GAAATHYLGSCPASL 187

Query: 306 SIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVI-LSSSYDGLIVKWIQGIGYGGKLQR 364
           +                    V A      +       ++Y G++V  +      G +  
Sbjct: 188 AASDLAAAPA-------AAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPA 240

Query: 365 KENSQIKCFAAIEEEIVTSGFDNKIWR-VSLQGDQCGYANSIDIGSQPKDLSVALHYPEL 423
              +        E       F +  ++ V+   +     + I I +     S        
Sbjct: 241 AGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNT----DGIMILTVEHSRSCLAAAENT 296

Query: 424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAII--GSQDGKLRVYSIRGDTL 481
             V+   G       +    I+      A   A DG+       +    L +Y    D  
Sbjct: 297 SSVTASVG-------QTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQD 349

Query: 482 T 482
            
Sbjct: 350 Q 350

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 51.5 bits (122), Expect = 2e-07
 Identities = 44/343 (12%), Positives = 95/343 (27%), Gaps = 31/343 (9%)

Query: 196 FSPDGSKFISV--SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA 253
              D     SV      +  + DG +   +  +        +V+    S  G+ +L    
Sbjct: 26  NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVID----TGYAVHISRMSASGRYLLVIGR 81

Query: 254 DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDL 313
           D    + D+      K+ +      +  V+            +         +I     L
Sbjct: 82  DARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL 141

Query: 314 EKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCF 373
           E   +  +  M   T           I++S      +  ++  G    +  K+   +   
Sbjct: 142 EPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTV- 200

Query: 374 AAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVST-DSGV 432
                   + G    +                   +   +    +   +  L +  D G 
Sbjct: 201 -------TSIGAAPFLADGGWDSSH----RYFMTAANNSNKVAVIDSKDRRLSALVDVGK 249

Query: 433 VLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG 492
               G           PV +++   DGS ++IG+       Y        + A L+   G
Sbjct: 250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQY-----AWKKVAELQGQGG 304

Query: 493 AVSVIRYSP-------DVSMFASGDVNREAIVWDRVSREVKLK 528
               I+  P       D +      +++   V+D  + + K +
Sbjct: 305 GSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ 347

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 46.9 bits (110), Expect = 5e-06
 Identities = 35/337 (10%), Positives = 84/337 (24%), Gaps = 39/337 (11%)

Query: 11  VPSTERGRGILISGHPKSN-SILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNG 69
           V   +R +  L      +  S+   +   + ++D  +   V +             S +G
Sbjct: 15  VKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISR-MSASG 73

Query: 70  EWIASADVSGTVRIWGAHNDHVLK-KEFRVLSGRID---DLQWSPDGLRIVACGDGKGK- 124
            ++        + +         K  E ++               +    +A      + 
Sbjct: 74  RYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQF 133

Query: 125 ---------SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG 175
                                +   +    R     A      F +       ++     
Sbjct: 134 AIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193

Query: 176 PPFKFKLSHRGHSNFVNCVRFSPDGSKFISV-------------SSDKKGIIYDGKTADK 222
                 ++  G + F+    +      F++                    ++  GKT   
Sbjct: 194 DIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHP 253

Query: 223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV 282
               +      G V++ S   DG   L  +  K+   +        K    L   G G +
Sbjct: 254 GRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYA------WKKVAELQGQGGGSL 307

Query: 283 DDML---VGCLW-QNDFLVIVSLGGTISIFSANDLEK 315
                     L+    F     +  ++++F   +L+ 
Sbjct: 308 FIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 344

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 45.3 bits (106), Expect = 1e-05
 Identities = 37/357 (10%), Positives = 96/357 (26%), Gaps = 40/357 (11%)

Query: 191 VNCVRFSPDGSKFISVSSDKKGIIYDGKTA--DKIGELSPEDGHKGSVYAVSWSPDGKQV 248
           V+  R S  G   + +  D +  + D       K+ E+      +    +     + +  
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 249 LTASADKSAKVWDISEDNHGKLKKTLTPSG-------SGGVDDMLVGCLWQNDFLVIVSL 301
           +  +           E    K   +                   ++      +F+V V  
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE 183

Query: 302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGK 361
            G + + +  D++   +   G    +      +     + +++    +            
Sbjct: 184 TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSA 243

Query: 362 LQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYP 421
           L                        +     +    + G   S         +S+    P
Sbjct: 244 LVD-----------------VGKTPHPGRGANFVHPKYGPVWSTSHLGDGS-ISLIGTDP 285

Query: 422 ELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIR---- 477
           +         V  L+G    S + ++    +S +  D +          + V+ ++    
Sbjct: 286 KNHPQYAWKKVAELQGQGGGS-LFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDA 344

Query: 478 GDTL---TEEAVLEKHRGAVSVIRYSPD-----VSMFASGDVNREAIVWDRVSREVK 526
              +    E A L +    V    Y+        S++   + +   +V D  + ++K
Sbjct: 345 KYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLK 401

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 269

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 47.5 bits (111), Expect = 2e-06
 Identities = 37/245 (15%), Positives = 58/245 (23%), Gaps = 10/245 (4%)

Query: 42  LDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSG 101
            D  N   V        P     +SP+G  +A                            
Sbjct: 26  YDGYNQFVVH---RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFP 82

Query: 102 RID-DLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFR 160
           R +    +SPDG ++       G   +      SG      DG S       F  S+   
Sbjct: 83  RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 142

Query: 161 IATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTA 220
             +        +            R                    V     G        
Sbjct: 143 FTSDQAGRPQVYKVNINGGAP--QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQ 200

Query: 221 DKIGELSPEDGHKGSVYAVSWSPDGKQVL-TASADKSAKVWDISEDNHGKLKKTLTPSGS 279
           D                  S +P+G  V+ ++S    + +  +S D  G+ K  L  +  
Sbjct: 201 DLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD--GRFKARLP-ATD 257

Query: 280 GGVDD 284
           G V  
Sbjct: 258 GQVKF 262

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 281

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 36/279 (12%), Positives = 76/279 (27%), Gaps = 24/279 (8%)

Query: 18  RGILISGHPKSNSILYTNGRSVIILDL--SNPLQVSIYGEHAYPATVARFSPNGEWIA-S 74
             +L++     + I++     +   DL   +  ++     +      ARF P+G  IA  
Sbjct: 2   PNLLLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIV---SNLGVINNARFFPDGRKIAIR 58

Query: 75  ADVSGTVRIWGAHNDHVLKKEFRVLS----------GRIDDLQWSPDGLRIVACGDGKGK 124
                ++     +  +    E + ++             D   + PDG  I++    +  
Sbjct: 59  VMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPF 118

Query: 125 SLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH 184
           S +          +     +        F   R        E      Y G         
Sbjct: 119 SSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE 178

Query: 185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDG------HKGSVYA 238
                F   V           +   +   I D     +I     +             Y 
Sbjct: 179 VNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP 237

Query: 239 VSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPS 277
              + DG+++L  S   S  +++   +   K++     S
Sbjct: 238 RHLNTDGRRIL-FSKGGSIYIFNPDTEKIEKIEIGDLES 275

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 33/293 (11%), Positives = 74/293 (25%), Gaps = 55/293 (18%)

Query: 34  TNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVL 92
           +   ++ ++D+++    +     + P      SP+G  +  +   S  V I     ++V+
Sbjct: 9   SESDNISVIDVTSNKVTATIPVGSNPMGAV-ISPDGTKVYVANAHSNDVSIIDTATNNVI 67

Query: 93  KKEFRVLSGR----------------------------------------IDDLQWSPDG 112
                  S +                                           L  SPDG
Sbjct: 68  ATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDG 127

Query: 113 LRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF 172
            ++    +G     V   +  +  N        + + +     ++ +          V  
Sbjct: 128 KKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGI-AVTPDGTKVYVANFDSMSISVID 186

Query: 173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGH 232
                    +      + +                      + D  T      +      
Sbjct: 187 TVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIP----V 242

Query: 233 KGSVYAVSWSPDGKQVL-TASADKSAKVWDISEDNHGKLKKTLT----PSGSG 280
                 ++ +PDGK+V    S   +  V D +      +  T+     P  SG
Sbjct: 243 GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTAT---NTITATMAVGKNPYASG 292

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 36/315 (11%), Positives = 65/315 (20%), Gaps = 25/315 (7%)

Query: 186 GHSNFVNCVRFSPDGSKFISVSSDKKGI-IYDGKTADKIGELSPEDGHKGSVYAVSWSPD 244
                V  +  SPD          +  +  Y     D     + E    GS+  +S    
Sbjct: 34  DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQ 93

Query: 245 GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGT 304
           G+ V   S +         ED        +                  +     + +   
Sbjct: 94  GQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL------DGCHSANISPDNRTLWVPAL 147

Query: 305 ISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR 364
                          L                  ++   +                   +
Sbjct: 148 KQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELK 207

Query: 365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELV 424
             +  I+C   ++              + +  D           S     SV+     L 
Sbjct: 208 DPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 267

Query: 425 LVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQD-GKLRVYSIRGDT--L 481
                      RG                 +   G   I   Q    + VY I G+   L
Sbjct: 268 KEGFQPTETQPRGF---------------NVDHSGKYLIAAGQKSHHISVYEIVGEQGLL 312

Query: 482 TEEAVLEKHRGAVSV 496
            E+      +G + V
Sbjct: 313 HEKGRYAVGQGPMWV 327

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 470

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 37.8 bits (86), Expect = 0.004
 Identities = 24/181 (13%), Positives = 55/181 (30%), Gaps = 12/181 (6%)

Query: 106 LQWSPDGLRIVAC----GDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRI 161
           L+   +   +  C      G+   LV        +  G                +  ++I
Sbjct: 278 LRRIQNYSVMDICDYDESSGRWNCLVA-RQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKI 336

Query: 162 ATCGEDF-LVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI---IY-- 215
            +  E +  + +++          +G    +     + D   +IS           +Y  
Sbjct: 337 ISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKI 396

Query: 216 DGKTADKIGELSPE-DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL 274
                 K+  LS E +  +   Y+VS+S + K      +     ++ +    + K  + L
Sbjct: 397 QLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456

Query: 275 T 275
            
Sbjct: 457 E 457

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	609
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	100.0
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.96
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.93
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.87
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.85
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.8
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.79
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.77
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.73
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.72
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.62
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.45
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.34
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.32
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.27
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.23
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.99
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.92
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.81
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.77
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.75
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.69
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.64
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.57
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.51
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.41
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.37
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.31
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.27
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.17
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.55
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.84
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.84
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	96.28
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.2
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.82
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.56
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	95.33
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	94.82
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.72
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	92.0
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	90.34
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	89.9
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	86.63
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	85.92
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	81.4
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	80.68

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-44  Score=351.09  Aligned_cols=300  Identities=37%  Similarity=0.728  Sum_probs=266.2

Q ss_pred             ceeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEE
Q 007283            5 AETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIW   84 (609)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vW   84 (609)
                      ...|++.|...||.+..++++|+|+.|+|++++.+++|++.++.....+.+|++.|++++|+|+|++||+|+.||+|+||
T Consensus         6 ~~~~~~~p~~~r~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iw   85 (311)
T d1nr0a1           6 TALFPSLPRTARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIW   85 (311)
T ss_dssp             EEEECCCCCCCTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             cccccCCCCCCCCCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeee
Confidence            45789999999999999999999999999999999999999998888899999999999999999999999999999999


Q ss_pred             cCCCCce-eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEE
Q 007283           85 GAHNDHV-LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT  163 (609)
Q Consensus        85 d~~~~~~-~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t  163 (609)
                      |+.+.+. ....+..|.++|.+++|+||+++|++++++... .+++|+|+.++....+.+|...|.+++|+|++++.+++
T Consensus        86 d~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~-~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~s  164 (311)
T d1nr0a1          86 DTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER-FGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIIS  164 (311)
T ss_dssp             ESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC-SEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEE
T ss_pred             eeeccccccccccccccCccccccccccccccccccccccc-cccccccccccccccccccccccccccccccceeeecc
Confidence            9987653 345678899999999999999999999876543 57899999988888899999999999999999988999


Q ss_pred             ecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCc----CCCCccceEEE
Q 007283          164 CGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSP----EDGHKGSVYAV  239 (609)
Q Consensus       164 ~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~----~~~h~~~V~~l  239 (609)
                      |+.|+.+++||.++.+....+.+|...|+++.|+|++++|++++.|+.+++||..++.....+..    ..+|.+.|+++
T Consensus       165 gs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~  244 (311)
T d1nr0a1         165 GSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGL  244 (311)
T ss_dssp             EETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999988776554421    24789999999


Q ss_pred             EECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeC
Q 007283          240 SWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSA  310 (609)
Q Consensus       240 ~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~  310 (609)
                      +|+|++++|++++.|++|++||++   .+++.+++....  ........+.|+++.+++++.+|.|++|+.
T Consensus       245 ~~s~~~~~l~tgs~Dg~v~iwd~~---t~~~~~~l~~~~--~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~  310 (311)
T d1nr0a1         245 TWSPDGTKIASASADKTIKIWNVA---TLKVEKTIPVGT--RIEDQQLGIIWTKQALVSISANGFINFVNP  310 (311)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETT---TTEEEEEEECCS--SGGGCEEEEEECSSCEEEEETTCCEEEEET
T ss_pred             ccCCCCCEEEEEeCCCeEEEEECC---CCcEEEEEECCC--CccceEEEEEecCCEEEEEECCCEEEEEeC
Confidence            999999999999999999999987   456666664332  233445667888999999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=8.5e-39  Score=310.66  Aligned_cols=310  Identities=20%  Similarity=0.330  Sum_probs=236.0

Q ss_pred             ccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283           48 LQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV  127 (609)
Q Consensus        48 ~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  127 (609)
                      .....|.||++.|++++|+|+|++||||+.||+|+|||+.+++.+ ..+..|...|.+++|+|++..             
T Consensus         8 ~~~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~-~~~~~h~~~V~~~~~~~~~~~-------------   73 (317)
T d1vyhc1           8 PEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE-RTLKGHTDSVQDISFDHSGKL-------------   73 (317)
T ss_dssp             SCSCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCC-EEECCCSSCEEEEEECTTSSE-------------
T ss_pred             CccEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEE-EEEeCCCCcEEEEeeeccccc-------------
Confidence            344568999999999999999999999999999999999876532 334444444544444444433             


Q ss_pred             EEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe
Q 007283          128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS  207 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~  207 (609)
                                                       +++++.+..+.+|+....+....+.+|...+.++.|+|+++.+++++
T Consensus        74 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (317)
T d1vyhc1          74 ---------------------------------LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS  120 (317)
T ss_dssp             ---------------------------------EEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             ---------------------------------ccccccccccccccccccccccccccccccceeeeccCCCceEEeec
Confidence                                             44555555566666666666667788999999999999999999999


Q ss_pred             CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEE
Q 007283          208 SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLV  287 (609)
Q Consensus       208 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (609)
                      .|+.+.+||.++++.+..+   .+|...+.+++|+|++.+|++++.|+.+++|++..   ++..                
T Consensus       121 ~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~---~~~~----------------  178 (317)
T d1vyhc1         121 RDKTIKMWEVQTGYCVKTF---TGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECK----------------  178 (317)
T ss_dssp             TTSEEEEEETTTCCEEEEE---ECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---CCEE----------------
T ss_pred             cCcceeEeecccceeeeEE---ccCCCcceeeecccCCCEEEEEeCCCeEEEEeecc---ceee----------------
Confidence            9999999999998877666   36889999999999999999999999999999863   1111                


Q ss_pred             EEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccc
Q 007283          288 GCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKEN  367 (609)
Q Consensus       288 ~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~  367 (609)
                                                    ..+.+|...+..+.+.+.....                       .....
T Consensus       179 ------------------------------~~~~~~~~~i~~~~~~~~~~~~-----------------------~~~~~  205 (317)
T d1vyhc1         179 ------------------------------AELREHRHVVECISWAPESSYS-----------------------SISEA  205 (317)
T ss_dssp             ------------------------------EEECCCSSCEEEEEECCSCGGG-----------------------GGGGC
T ss_pred             ------------------------------EEEecCCCCceEEEEeeccccc-----------------------eeecc
Confidence                                          1223455555555543211000                       00000


Q ss_pred             cceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccC
Q 007283          368 SQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLR  447 (609)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  447 (609)
                                                                                                      
T Consensus       206 --------------------------------------------------------------------------------  205 (317)
T d1vyhc1         206 --------------------------------------------------------------------------------  205 (317)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEE
Q 007283          448 FPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKL  527 (609)
Q Consensus       448 ~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~  527 (609)
                      ..........++..+++|+.|+.|++|++.++..  ...+.+|...|.+++|+|++++|++|+.|+.|++||+.+.+. +
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~  282 (317)
T d1vyhc1         206 TGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRC-M  282 (317)
T ss_dssp             CSCC-------CCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCC-C
T ss_pred             ccceeeeeccCCceeEeccCCCEEEEEECCCCcE--EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcE-E
Confidence            0001112234577899999999999999987765  456789999999999999999999999999999999887654 4


Q ss_pred             eeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283          528 KNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       528 ~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                      ..+.+|...|++++|+|++++|++|+.||+|+|||
T Consensus       283 ~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         283 KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            45778999999999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.8e-38  Score=311.26  Aligned_cols=285  Identities=16%  Similarity=0.256  Sum_probs=234.5

Q ss_pred             cCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC
Q 007283           55 EHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS  134 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  134 (609)
                      +|...|.+++|||+|++||||+ ||.|+|||+.+...... +                                      
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~-~--------------------------------------   88 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSP-V--------------------------------------   88 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSC-S--------------------------------------
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccce-e--------------------------------------
Confidence            7999999999999999999997 89999999976532100 0                                      


Q ss_pred             CCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCC--CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcE
Q 007283          135 GTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPP--FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKG  212 (609)
Q Consensus       135 ~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~--~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i  212 (609)
                        ......+|...|.+++|+|++.. |++|+.|+.|++|+...  .+....+.+|...+.++.|+|++..+++++.|+.+
T Consensus        89 --~~~~~~~h~~~I~~v~~s~dg~~-l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i  165 (337)
T d1gxra_          89 --SQLDCLNRDNYIRSCKLLPDGCT-LIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             --EEEECSCTTSBEEEEEECTTSSE-EEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             --EEeeecCCCCcEEEEEEcCCCCE-EEEeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence              01123467888999999998875 88999999999999654  34556678899999999999999999999999999


Q ss_pred             EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          213 IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       213 ~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      .+|+..+++.....   .+|...|.+++|+|++.++++++.|+.+++||++.   ++....+                  
T Consensus       166 ~~~~~~~~~~~~~~---~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~---~~~~~~~------------------  221 (337)
T d1gxra_         166 AVWDLHNQTLVRQF---QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE---GRQLQQH------------------  221 (337)
T ss_dssp             EEEETTTTEEEEEE---CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEE------------------
T ss_pred             cccccccccccccc---ccccccccccccccccccccccccccccccccccc---ceeeccc------------------
Confidence            99999988766554   36889999999999999999999999999999752   1000000                  


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283          293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC  372 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~  372 (609)
                                                   .|                                                 
T Consensus       222 -----------------------------~~-------------------------------------------------  223 (337)
T d1gxra_         222 -----------------------------DF-------------------------------------------------  223 (337)
T ss_dssp             -----------------------------EC-------------------------------------------------
T ss_pred             -----------------------------cc-------------------------------------------------
Confidence                                         00                                                 


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeE
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTA  452 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (609)
                                                                                                ..++.+
T Consensus       224 --------------------------------------------------------------------------~~~i~~  229 (337)
T d1gxra_         224 --------------------------------------------------------------------------TSQIFS  229 (337)
T ss_dssp             --------------------------------------------------------------------------SSCEEE
T ss_pred             --------------------------------------------------------------------------ccceEE
Confidence                                                                                      012556


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecC
Q 007283          453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLY  532 (609)
Q Consensus       453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~  532 (609)
                      ++++|+++++++|+.|+.|++|+++....   .....|.+.|.+++|+|++++|++++.|+.|++||..+++...  ...
T Consensus       230 l~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~--~~~  304 (337)
T d1gxra_         230 LGYCPTGEWLAVGMESSNVEVLHVNKPDK---YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF--QSK  304 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSCE---EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE--EEE
T ss_pred             EEEcccccccceecccccccccccccccc---ccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEE--Ecc
Confidence            77889999999999999999999987654   3457899999999999999999999999999999988776533  245


Q ss_pred             CCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          533 HTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       533 h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      |...|++++|+||+++|++|+.|++|+|||+
T Consensus       305 ~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            8899999999999999999999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-37  Score=304.71  Aligned_cols=284  Identities=15%  Similarity=0.199  Sum_probs=228.0

Q ss_pred             CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC--cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS--PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      +|...|+|++|+|+|++|++|+ |+.|+|||+.+......+.  ...+|.+.|.+++|+||+++|++++.|++|++||+.
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~  127 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLA  127 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccccccccccc
Confidence            7999999999999999999987 8999999987765433221  124789999999999999999999999999999975


Q ss_pred             cCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEE
Q 007283          264 EDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSS  343 (609)
Q Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~  343 (609)
                      ... .+.                                              ...+.+|...+..+.+++ ++..++++
T Consensus       128 ~~~-~~~----------------------------------------------~~~~~~~~~~v~~~~~~~-~~~~l~s~  159 (337)
T d1gxra_         128 APT-PRI----------------------------------------------KAELTSSAPACYALAISP-DSKVCFSC  159 (337)
T ss_dssp             CC---EE----------------------------------------------EEEEECSSSCEEEEEECT-TSSEEEEE
T ss_pred             ccc-ccc----------------------------------------------cccccccccccccccccc-cccccccc
Confidence            311 000                                              123445777787887764 55789999


Q ss_pred             ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcE
Q 007283          344 SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL  423 (609)
Q Consensus       344 s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (609)
                      +.|+.|++|+...+....                                                              
T Consensus       160 ~~d~~i~~~~~~~~~~~~--------------------------------------------------------------  177 (337)
T d1gxra_         160 CSDGNIAVWDLHNQTLVR--------------------------------------------------------------  177 (337)
T ss_dssp             ETTSCEEEEETTTTEEEE--------------------------------------------------------------
T ss_pred             cccccccccccccccccc--------------------------------------------------------------
Confidence            999999999764321000                                                              


Q ss_pred             EEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC
Q 007283          424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV  503 (609)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~  503 (609)
                                        ....+..++.+++++|++..+++|+.|+.|++||++.+...   ....|.+.|.+++|+|++
T Consensus       178 ------------------~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~---~~~~~~~~i~~l~~~~~~  236 (337)
T d1gxra_         178 ------------------QFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQL---QQHDFTSQIFSLGYCPTG  236 (337)
T ss_dssp             ------------------EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEE---EEEECSSCEEEEEECTTS
T ss_pred             ------------------cccccccccccccccccccccccccccccccccccccceee---cccccccceEEEEEcccc
Confidence                              00012245788999999999999999999999999876542   234588999999999999


Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEE
Q 007283          504 SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYG  583 (609)
Q Consensus       504 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~  583 (609)
                      .++++|+.|+.+++||+...+..  ....|...|++++|+|++++|++++.|++|++||+....  .+. ...|.+.|++
T Consensus       237 ~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~--~~~-~~~~~~~v~~  311 (337)
T d1gxra_         237 EWLAVGMESSNVEVLHVNKPDKY--QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGA--SIF-QSKESSSVLS  311 (337)
T ss_dssp             SEEEEEETTSCEEEEETTSSCEE--EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC--EEE-EEECSSCEEE
T ss_pred             cccceeccccccccccccccccc--cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCC--EEE-EccCCCCEEE
Confidence            99999999999999998776643  356799999999999999999999999999999987643  222 3458899999


Q ss_pred             EEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          584 LAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       584 ~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      ++|+ ++++|+|+|.|++|++|+|
T Consensus       312 ~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         312 CDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             EEECTTSCEEEEEETTSCEEEEEE
T ss_pred             EEEeCCCCEEEEEeCCCeEEEEEE
Confidence            9999 7789999999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=8.3e-37  Score=295.18  Aligned_cols=294  Identities=22%  Similarity=0.383  Sum_probs=225.1

Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcE
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSA  257 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i  257 (609)
                      ++..+.+.||...|++++|+|||++|++|+.|++|++||..+++.+..+.  .+|...|++++|+|++++ ++++.|+++
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~--~~h~~~v~~v~~~~~g~~-~~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP--DVHATMITGIKTTSKGDL-FTVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS--CSCSSCEEEEEECTTSCE-EEEETTTEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc--CCCCCcEEEEEeecccee-ecccceeeE
Confidence            35567789999999999999999999999999999999999988776653  478999999999999975 566679999


Q ss_pred             EEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCC
Q 007283          258 KVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDP  337 (609)
Q Consensus       258 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  337 (609)
                      ++|+.......                                              ........|...+..+++.+ ++
T Consensus        79 ~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~~s~-~g  111 (299)
T d1nr0a2          79 KVVPAGGSGVD----------------------------------------------SSKAVANKLSSQPLGLAVSA-DG  111 (299)
T ss_dssp             EEECSSSSSSC----------------------------------------------TTSCCEEECSSCEEEEEECT-TS
T ss_pred             EEeccCCcccc----------------------------------------------cccccccccccccccccccc-cc
Confidence            99997531100                                              00011223555666777654 33


Q ss_pred             CEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEee
Q 007283          338 KVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVA  417 (609)
Q Consensus       338 ~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  417 (609)
                      .+++ ++.++.+++|+....                                                            
T Consensus       112 ~~~~-~~~~~~i~~~~~~~~------------------------------------------------------------  130 (299)
T d1nr0a2         112 DIAV-AACYKHIAIYSHGKL------------------------------------------------------------  130 (299)
T ss_dssp             SCEE-EEESSEEEEEETTEE------------------------------------------------------------
T ss_pred             cccc-ccccccccccccccc------------------------------------------------------------
Confidence            4444 445567888843110                                                            


Q ss_pred             ccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEE
Q 007283          418 LHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVI  497 (609)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v  497 (609)
                                              ..........+++++|+++++++|+.||.|++||++++.... .....|...|.++
T Consensus       131 ------------------------~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~-~~~~~~~~~i~~~  185 (299)
T d1nr0a2         131 ------------------------TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE-VKTIVHPAEITSV  185 (299)
T ss_dssp             ------------------------EEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE-EEEEECSSCEEEE
T ss_pred             ------------------------cccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc
Confidence                                    000011235678899999999999999999999998776543 3345799999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceE--EeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEec
Q 007283          498 RYSPDVSMFASGDVNREAIVWDRVSREVK--LKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKG  575 (609)
Q Consensus       498 ~~s~~~~~l~s~s~d~~v~iwd~~~~~~~--~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~  575 (609)
                      +|+|++.++++++.|+.+++||+.+....  ...+..|...|++++|+|++++|++|+.|++|++||+..+.........
T Consensus       186 ~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~  265 (299)
T d1nr0a2         186 AFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKG  265 (299)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEec
Confidence            99999999999999999999998765432  2335679999999999999999999999999999999865433333334


Q ss_pred             c-ccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          576 A-HLGGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       576 ~-h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      + |...|.++.|.++++|+|+|.|++|++|||+
T Consensus       266 ~~~~~~v~~~~~~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         266 AHAMSSVNSVIWLNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             SSTTSCEEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred             CCCCCcEEEEEECCCCEEEEEeCCCEEEEEecc
Confidence            4 4556788877788999999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.4e-36  Score=295.52  Aligned_cols=300  Identities=35%  Similarity=0.607  Sum_probs=241.7

Q ss_pred             CcceeecCCCccCcCceeEEeecCCCCeEEEeCCCEEEEEeCC--CCc--cccccccCC-CCcEEEEECC--CCCEEEEE
Q 007283            3 QLAETYTCVPSTERGRGILISGHPKSNSILYTNGRSVIILDLS--NPL--QVSIYGEHA-YPATVARFSP--NGEWIASA   75 (609)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~--~~~--~~~~~~~h~-~~v~~~~~sp--~g~~las~   75 (609)
                      .|.+.++..|.+.|+.+..++++|+|+.|+++.+..+.++.+.  ...  ....+.+|. ..|++++|+|  +|++||||
T Consensus         4 ~l~~~~p~~p~t~~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasg   83 (325)
T d1pgua1           4 SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG   83 (325)
T ss_dssp             EEEEEECCCCCCCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred             ccccccCCcCCCCCCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEE
Confidence            4778888999999999999999999999999988776664443  322  234466774 6799999998  67899999


Q ss_pred             eCCCcEEEEcCCCCce-------eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccE
Q 007283           76 DVSGTVRIWGAHNDHV-------LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRV  148 (609)
Q Consensus        76 ~~d~~i~vWd~~~~~~-------~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  148 (609)
                      +.||+|+|||+..++.       ....+..+.++|.+++|+|+|++|++++.+.+. .+++++|+.++.+..+.+|...|
T Consensus        84 s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v  162 (325)
T d1pgua1          84 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDN-FGVFISWDSGNSLGEVSGHSQRI  162 (325)
T ss_dssp             ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSC-SEEEEETTTCCEEEECCSCSSCE
T ss_pred             eCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccc-eEEEEeecccccceeeeeccccc
Confidence            9999999999875431       122345678899999999999999998866543 57899999999999999999999


Q ss_pred             EEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee---ccCcccceEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcccc
Q 007283          149 LSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS---HRGHSNFVNCVRFSPD-GSKFISVSSDKKGIIYDGKTADKIG  224 (609)
Q Consensus       149 ~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~---~~~h~~~v~~l~~s~d-g~~l~s~~~d~~i~iwd~~~~~~~~  224 (609)
                      .+++|+|+++.++++++.|+.+++|+.++.+....   +.+|...|.+++|+|+ +.+|++++.|+.|++||.++++.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~  242 (325)
T d1pgua1         163 NACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLK  242 (325)
T ss_dssp             EEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEE
T ss_pred             ccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccc
Confidence            99999999988889999999999999988776544   4567888999999997 6789999999999999999998877


Q ss_pred             ccCcCCCCccceEEEEEC---CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc-CCeEEEEE
Q 007283          225 ELSPEDGHKGSVYAVSWS---PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ-NDFLVIVS  300 (609)
Q Consensus       225 ~~~~~~~h~~~V~~l~~s---pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  300 (609)
                      .+.   +|...+.++.|+   ||+++|++++.|++|++||++   .++.++.+..... ........+.+. +.++++++
T Consensus       243 ~l~---~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~s~s  315 (325)
T d1pgua1         243 YIE---DDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVT---TSKCVQKWTLDKQ-QLGNQQVGVVATGNGRIISLS  315 (325)
T ss_dssp             ECC---BTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETT---TTEEEEEEECCTT-CGGGCEEEEEEEETTEEEEEE
T ss_pred             ccc---ccccccccceeeeeccCCCEEEEEeCCCeEEEEECC---CCCEEEEEEecCC-cccCeEEEEEECCCCEEEEEE
Confidence            663   566666555554   789999999999999999997   3566666654332 223334455565 45899999


Q ss_pred             cCCcEEEEeC
Q 007283          301 LGGTISIFSA  310 (609)
Q Consensus       301 ~~g~i~~~~~  310 (609)
                      .||+|++|++
T Consensus       316 ~dg~i~vwdl  325 (325)
T d1pgua1         316 LDGTLNFYEL  325 (325)
T ss_dssp             TTSCEEEEET
T ss_pred             CCCEEEEEEC
Confidence            9999999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-35  Score=296.66  Aligned_cols=321  Identities=23%  Similarity=0.338  Sum_probs=233.5

Q ss_pred             ccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283           54 GEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD  133 (609)
Q Consensus        54 ~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  133 (609)
                      .+|++.|+|++|||||++||+|+ |++|+|||+.+++.+. .+..+......    +                       
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~-~~~~~~~~~~~----~-----------------------  109 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA-RLSDDSAANKD----P-----------------------  109 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE-EECC-----------------------------------
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEe-eeccccccccc----c-----------------------
Confidence            36999999999999999999997 8999999998876432 22222110000    0                       


Q ss_pred             CCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEE
Q 007283          134 SGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGI  213 (609)
Q Consensus       134 ~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~  213 (609)
                      ..........|...|.+++|+|++.. |++|+.|+.+++|+....+......+|...|.++.|++++..+++++.++.++
T Consensus       110 ~~~~~~~~~~~~~~V~~l~~s~~~~~-l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~  188 (388)
T d1erja_         110 ENLNTSSSPSSDLYIRSVCFSPDGKF-LATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVR  188 (388)
T ss_dssp             ---------CCCCBEEEEEECTTSSE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             cccccccccCCCCCEEEEEECCCCCc-ceecccccccccccccccccccccccccccccccccccccccccccccceeee
Confidence            00011234578889999999999874 99999999999999999998889999999999999999999999999999999


Q ss_pred             EEeCCCCccccccCcCCCCccceEEEEEC-CCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEc
Q 007283          214 IYDGKTADKIGELSPEDGHKGSVYAVSWS-PDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQ  292 (609)
Q Consensus       214 iwd~~~~~~~~~~~~~~~h~~~V~~l~~s-pd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (609)
                      +||..+........   .+. ...++.++ +++.+|++++.|+.|++|++..   +.....+..                
T Consensus       189 ~~d~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~---~~~~~~~~~----------------  245 (388)
T d1erja_         189 IWDLRTGQCSLTLS---IED-GVTTVAVSPGDGKYIAAGSLDRAVRVWDSET---GFLVERLDS----------------  245 (388)
T ss_dssp             EEETTTTEEEEEEE---CSS-CEEEEEECSTTCCEEEEEETTSCEEEEETTT---CCEEEEEC-----------------
T ss_pred             eeeccccccccccc---ccc-ccccccccCCCCCeEEEEcCCCeEEEeeccc---Cccceeecc----------------
Confidence            99998877665442   233 34455554 5889999999999999999863   222222210                


Q ss_pred             CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeE
Q 007283          293 NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKC  372 (609)
Q Consensus       293 ~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~  372 (609)
                                             ......+|...|.++++++ ++.++++++.|+.|++|+..............     
T Consensus       246 -----------------------~~~~~~~h~~~v~~l~~s~-~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----  296 (388)
T d1erja_         246 -----------------------ENESGTGHKDSVYSVVFTR-DGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN-----  296 (388)
T ss_dssp             ----------------------------CCCSSCEEEEEECT-TSSEEEEEETTSEEEEEEC------------------
T ss_pred             -----------------------ccccccCCCCCEEEEEECC-CCCEEEEEECCCcEEEEeccCCcccccccccc-----
Confidence                                   0122456889999999875 45799999999999999764321100000000     


Q ss_pred             eeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeE
Q 007283          373 FAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTA  452 (609)
Q Consensus       373 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (609)
                                                                                     ..........+...+.+
T Consensus       297 ---------------------------------------------------------------~~~~~~~~~~~~~~v~~  313 (388)
T d1erja_         297 ---------------------------------------------------------------SGTCEVTYIGHKDFVLS  313 (388)
T ss_dssp             -----------------------------------------------------------------CEEEEEECCSSCEEE
T ss_pred             ---------------------------------------------------------------ccceeeecccccceEEE
Confidence                                                                           00000111223456889


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEE------CCCCCEEEEEeCCCeEEEEEcc
Q 007283          453 SAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY------SPDVSMFASGDVNREAIVWDRV  521 (609)
Q Consensus       453 ~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~------s~~~~~l~s~s~d~~v~iwd~~  521 (609)
                      ++++|+|+++++|+.||.|++||++++..  ...+++|.+.|.++++      +|++.+||||+.|++|++|+++
T Consensus       314 ~~~s~~~~~l~sg~~dg~i~vwd~~~~~~--~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         314 VATTQNDEYILSGSKDRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECGGGCEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCcE--EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999999999999987765  4578899999999975      6789999999999999999963

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.4e-35  Score=286.65  Aligned_cols=293  Identities=19%  Similarity=0.314  Sum_probs=228.0

Q ss_pred             ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283          179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK  258 (609)
Q Consensus       179 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~  258 (609)
                      +..++++||.+.|++++|+|++++||+|+.||+|+|||..+++.+..+.   .|...|.+++|+|++.++++++.|+.++
T Consensus        46 ~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~---~~~~~v~~v~~~~~~~~l~~~~~d~~i~  122 (340)
T d1tbga_          46 RTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIP---LRSSWVMTCAYAPSGNYVACGGLDNICS  122 (340)
T ss_dssp             CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEE---CSCSCEEEEEECTTSSEEEEEETTCCEE
T ss_pred             eeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEe---cccccEEeeEeeccceeeeeecccceee
Confidence            4556789999999999999999999999999999999999998877663   6899999999999999999999999999


Q ss_pred             EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283          259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK  338 (609)
Q Consensus       259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  338 (609)
                      +|+........                                             .....+.+|...........  ..
T Consensus       123 ~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~--~~  155 (340)
T d1tbga_         123 IYNLKTREGNV---------------------------------------------RVSRELAGHTGYLSCCRFLD--DN  155 (340)
T ss_dssp             EEESSSSCSCC---------------------------------------------CEEEEECCCSSCEEEEEEEE--TT
T ss_pred             ccccccccccc---------------------------------------------ccceeccccccccccccccc--cc
Confidence            99975321100                                             00112334444443333322  24


Q ss_pred             EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283          339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL  418 (609)
Q Consensus       339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (609)
                      .+.....|.....|.......                                                           
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  176 (340)
T d1tbga_         156 QIVTSSGDTTCALWDIETGQQ-----------------------------------------------------------  176 (340)
T ss_dssp             EEEEEETTTEEEEEETTTTEE-----------------------------------------------------------
T ss_pred             ccccccccccccccccccccc-----------------------------------------------------------
Confidence            566666666666653321100                                                           


Q ss_pred             cCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEE
Q 007283          419 HYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIR  498 (609)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~  498 (609)
                                           ..........+......|++.++++|+.|+.|++||++.+..  ...+.+|.+.|++++
T Consensus       177 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~--~~~~~~h~~~i~~v~  233 (340)
T d1tbga_         177 ---------------------TTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMC--RQTFTGHESDINAIC  233 (340)
T ss_dssp             ---------------------EEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE--EEEECCCSSCEEEEE
T ss_pred             ---------------------cccccccceeEeeeccccccceeEEeecCceEEEEECCCCcE--EEEEeCCCCCeEEEE
Confidence                                 000001123456677889999999999999999999987765  456789999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEccCCceEEe-eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccc
Q 007283          499 YSPDVSMFASGDVNREAIVWDRVSREVKLK-NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAH  577 (609)
Q Consensus       499 ~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~-~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h  577 (609)
                      |+|++.++++|+.|+.+++||+........ ....|...|++++|+|++++|++|+.||+|++||+...  ..+....+|
T Consensus       234 ~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~--~~~~~~~~H  311 (340)
T d1tbga_         234 FFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGH  311 (340)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC--CEEEEECCC
T ss_pred             ECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC--cEEEEEcCC
Confidence            999999999999999999999877654322 23457788999999999999999999999999998764  345666789


Q ss_pred             cCCeEEEEEc-CCCeEEEEeCCCcEEEEE
Q 007283          578 LGGVYGLAFT-DEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       578 ~~~v~~~~~s-~~~~l~s~s~D~~i~~W~  605 (609)
                      .+.|++++|+ ++.+|+|+|.||+|++||
T Consensus       312 ~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         312 DNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            9999999999 778999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=8.9e-35  Score=291.77  Aligned_cols=336  Identities=20%  Similarity=0.286  Sum_probs=243.2

Q ss_pred             EEEeCCCcEEEEcCCCCceee---EEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEE
Q 007283           73 ASADVSGTVRIWGAHNDHVLK---KEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVL  149 (609)
Q Consensus        73 as~~~d~~i~vWd~~~~~~~~---~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~  149 (609)
                      ...+.++...+|+....+...   .....|.+.|.+++|||||++|++++|+    .+++|+...+..+..+..+.....
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~~lasg~d~----~i~iW~~~~~~~~~~~~~~~~~~~  107 (388)
T d1erja_          32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK----TTQVYRVSDGSLVARLSDDSAANK  107 (388)
T ss_dssp             SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSSEEEEECBS----CEEEEETTTCCEEEEECC------
T ss_pred             cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCCEEEEEeCC----eEEEEEecccceEeeecccccccc
Confidence            356778899999976544222   1223589999999999999998876543    477888877777776665443211


Q ss_pred             EEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC
Q 007283          150 SCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE  229 (609)
Q Consensus       150 ~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  229 (609)
                      ...                         ........+|...|++++|+|+|++|++|+.|+.+++||...++.+...   
T Consensus       108 ~~~-------------------------~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~---  159 (388)
T d1erja_         108 DPE-------------------------NLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMIL---  159 (388)
T ss_dssp             ------------------------------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE---
T ss_pred             ccc-------------------------ccccccccCCCCCEEEEEECCCCCcceeccccccccccccccccccccc---
Confidence            110                         0011123468888999999999999999999999999999988877655   


Q ss_pred             CCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEe
Q 007283          230 DGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFS  309 (609)
Q Consensus       230 ~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~  309 (609)
                      .+|...|.++.|++++..+++++.++.+++||...   .......                                   
T Consensus       160 ~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~---~~~~~~~-----------------------------------  201 (388)
T d1erja_         160 QGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLTL-----------------------------------  201 (388)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT---TEEEEEE-----------------------------------
T ss_pred             ccccccccccccccccccccccccceeeeeeeccc---ccccccc-----------------------------------
Confidence            47999999999999999999999999999999762   1111110                                   


Q ss_pred             CCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceE
Q 007283          310 ANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKI  389 (609)
Q Consensus       310 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i  389 (609)
                                  .+......+.+++.++.++++++.|+.|++|+...+.....                           
T Consensus       202 ------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~---------------------------  242 (388)
T d1erja_         202 ------------SIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER---------------------------  242 (388)
T ss_dssp             ------------ECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEE---------------------------
T ss_pred             ------------ccccccccccccCCCCCeEEEEcCCCeEEEeecccCcccee---------------------------
Confidence                        12223344555666678999999999999997653211000                           


Q ss_pred             EEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCC
Q 007283          390 WRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDG  469 (609)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg  469 (609)
                        +..                                            .......+..++.+++++|+++++++|+.||
T Consensus       243 --~~~--------------------------------------------~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~  276 (388)
T d1erja_         243 --LDS--------------------------------------------ENESGTGHKDSVYSVVFTRDGQSVVSGSLDR  276 (388)
T ss_dssp             --EC--------------------------------------------------CCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             --ecc--------------------------------------------ccccccCCCCCEEEEEECCCCCEEEEEECCC
Confidence              000                                            0000011235688999999999999999999


Q ss_pred             cEEEEEecCCee----------eeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEE
Q 007283          470 KLRVYSIRGDTL----------TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINC  539 (609)
Q Consensus       470 ~i~iw~~~~~~~----------~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~  539 (609)
                      .|++|++.....          ........|...|.+++|+|++++|++|+.|++|++||+.+++. +..+.+|...|++
T Consensus       277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~-~~~l~~H~~~V~~  355 (388)
T d1erja_         277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP-LLMLQGHRNSVIS  355 (388)
T ss_dssp             EEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEE
T ss_pred             cEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE-EEEEeCCCCCEEE
Confidence            999999865432          11234567899999999999999999999999999999987765 4457889999999


Q ss_pred             EEE------CCCCcEEEEEeCCCeEEEEEcC
Q 007283          540 LAW------SPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       540 l~~------s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      +++      +||+++||||+.||+|+||++.
T Consensus       356 ~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         356 VAVANGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             EEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence            975      6799999999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=5e-35  Score=283.79  Aligned_cols=288  Identities=23%  Similarity=0.386  Sum_probs=231.7

Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      ....+.||.+.|++++|+|++++ |++|+.|+.|++||..+++....+.+|...|.+++|+|++..++++..++.+.+|+
T Consensus         9 ~~~~L~GH~~~I~~l~~sp~~~~-l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~   87 (317)
T d1vyhc1           9 EKYALSGHRSPVTRVIFHPVFSV-MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWD   87 (317)
T ss_dssp             CSCEEECCSSCEEEEEECSSSSE-EEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEE
T ss_pred             ccEEEcCCCCCeEEEEEcCCCCE-EEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccc
Confidence            34578999999999999999985 99999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL  296 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (609)
                      ....+....+   .+|...+.++.|+|++..+++++.|+.+++||+..   ++..                         
T Consensus        88 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---~~~~-------------------------  136 (317)
T d1vyhc1          88 FQGFECIRTM---HGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT---GYCV-------------------------  136 (317)
T ss_dssp             TTSSCEEECC---CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTT---CCEE-------------------------
T ss_pred             cccccccccc---ccccccceeeeccCCCceEEeeccCcceeEeeccc---ceee-------------------------
Confidence            8877765544   37889999999999999999999999999999752   1111                         


Q ss_pred             EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283          297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI  376 (609)
Q Consensus       297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~  376 (609)
                                           ..+.+|...+                                                 
T Consensus       137 ---------------------~~~~~~~~~~-------------------------------------------------  146 (317)
T d1vyhc1         137 ---------------------KTFTGHREWV-------------------------------------------------  146 (317)
T ss_dssp             ---------------------EEEECCSSCE-------------------------------------------------
T ss_pred             ---------------------eEEccCCCcc-------------------------------------------------
Confidence                                 1112233333                                                 


Q ss_pred             CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                                                                                                .+++++
T Consensus       147 --------------------------------------------------------------------------~~~~~~  152 (317)
T d1vyhc1         147 --------------------------------------------------------------------------RMVRPN  152 (317)
T ss_dssp             --------------------------------------------------------------------------EEEEEC
T ss_pred             --------------------------------------------------------------------------eeeecc
Confidence                                                                                      333455


Q ss_pred             CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC--------------------CCEEEEEeCCCeEE
Q 007283          457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD--------------------VSMFASGDVNREAI  516 (609)
Q Consensus       457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~--------------------~~~l~s~s~d~~v~  516 (609)
                      |++.++++|+.|+.|++|++..+..  ...+.+|...+.+++|+|+                    +.++++++.|+.++
T Consensus       153 ~~~~~l~~~~~d~~v~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~  230 (317)
T d1vyhc1         153 QDGTLIASCSNDQTVRVWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIK  230 (317)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEE
T ss_pred             cCCCEEEEEeCCCeEEEEeecccee--eEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEE
Confidence            5666666666666666666554433  2344556666666666654                    45799999999999


Q ss_pred             EEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEEEE
Q 007283          517 VWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSS  595 (609)
Q Consensus       517 iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~  595 (609)
                      +||..+.+. +..+..|...|++++|+|++++|++|+.||.|++||+....  .+....+|.+.|++++|+ ++++|+|+
T Consensus       231 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~V~~~~~s~~~~~l~s~  307 (317)
T d1vyhc1         231 MWDVSTGMC-LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR--CMKTLNAHEHFVTSLDFHKTAPYVVTG  307 (317)
T ss_dssp             EEETTTTEE-EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSC--CCEEEECCSSCEEEEEECSSSSCEEEE
T ss_pred             EEECCCCcE-EEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCc--EEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            999887654 44567899999999999999999999999999999997643  345567899999999999 77899999


Q ss_pred             eCCCcEEEEE
Q 007283          596 GEDACVRVWR  605 (609)
Q Consensus       596 s~D~~i~~W~  605 (609)
                      |.|++|++|+
T Consensus       308 s~Dg~i~iWd  317 (317)
T d1vyhc1         308 SVDQTVKVWE  317 (317)
T ss_dssp             ETTSEEEEEC
T ss_pred             eCCCeEEEeC
Confidence            9999999996

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=9.2e-35  Score=286.93  Aligned_cols=347  Identities=17%  Similarity=0.241  Sum_probs=249.4

Q ss_pred             eEEEecCCccEE-EEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          138 VGEFDGHSRRVL-SCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       138 ~~~~~~h~~~v~-~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      ..+++||...|. +++  +++. .|++|+.|+.|++||..+++....+.+|...|++++|+|++ .|++|+.|+.+++|+
T Consensus         5 ~~tL~GH~~~vitc~~--~~~~-~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           5 RTTLRGHMTSVITCLQ--FEDN-YVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEECCSSSCEEEEE--EETT-EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEE
T ss_pred             cEEECCcCCCcEEEEE--ECCC-EEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccc
Confidence            346889988864 444  4555 59999999999999999999999999999999999999864 799999999999999


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeE
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFL  296 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (609)
                      ....+....... ..+...+....+++++.++++++.|+.|++||+....   ..........                 
T Consensus        81 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~---~~~~~~~~~~-----------------  139 (355)
T d1nexb2          81 IKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES---SVPDHGEEHD-----------------  139 (355)
T ss_dssp             TTTTEEEEEECC-CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC--------------C-----------------
T ss_pred             cccccccccccc-ccccccccccccccccceeeeecCCCcEEEEEccCCc---eeccccccce-----------------
Confidence            988776554432 2345556778889999999999999999999986421   1111100000                 


Q ss_pred             EEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeee
Q 007283          297 VIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAI  376 (609)
Q Consensus       297 ~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~  376 (609)
                            ....................|...+.....   ++.+++++..|+.|++|+.......                
T Consensus       140 ------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~d~~i~~~d~~~~~~~----------------  194 (355)
T d1nexb2         140 ------YPLVFHTPEENPYFVGVLRGHMASVRTVSG---HGNIVVSGSYDNTLIVWDVAQMKCL----------------  194 (355)
T ss_dssp             ------CCEEESCTTTCTTEEEEEECCSSCEEEEEE---ETTEEEEEETTSCEEEEETTTTEEE----------------
T ss_pred             ------eccceeccccccceeeeeeecccccccccc---ccceeeeecccceeeeeecccccce----------------
Confidence                  000000000111111223445556555443   3478899999999999976432100                


Q ss_pred             CCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEc
Q 007283          377 EEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIA  456 (609)
Q Consensus       377 ~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  456 (609)
                                   ...                                                   ......+.++.++
T Consensus       195 -------------~~~---------------------------------------------------~~~~~~~~~~~~~  210 (355)
T d1nexb2         195 -------------YIL---------------------------------------------------SGHTDRIYSTIYD  210 (355)
T ss_dssp             -------------EEE---------------------------------------------------CCCSSCEEEEEEE
T ss_pred             -------------eee---------------------------------------------------ecccccccccccc
Confidence                         000                                                   0011235667889


Q ss_pred             CCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCc
Q 007283          457 PDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTAR  536 (609)
Q Consensus       457 p~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~  536 (609)
                      |++.++++++.|+.|++|+++++..  ...+.+|.+.|.++++++  +++++|+.|++|++||+.+....   +..|...
T Consensus       211 ~~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~  283 (355)
T d1nexb2         211 HERKRCISASMDTTIRIWDLENGEL--MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRK---FSYHHTN  283 (355)
T ss_dssp             TTTTEEEEEETTSCEEEEETTTCCE--EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEE---EEEECTT
T ss_pred             ccceeeecccccceEEeeecccccc--cccccccccccccccccc--ceeeeeeccccccccccccccee---cccccCC
Confidence            9999999999999999999987755  456789999999999865  69999999999999998776543   3456666


Q ss_pred             eEEE-EECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          537 INCL-AWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       537 i~~l-~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      +.++ .+++++++|++|+ |++|++||+.+++ .......+|.+.|++++|+++..++++|.||.++||.++
T Consensus       284 ~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~-~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         284 LSAITTFYVSDNILVSGS-ENQFNIYNLRSGK-LVHANILKDADQIWSVNFKGKTLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             CCCCCEEEECSSEEEEEE-TTEEEEEETTTCC-BCCSCTTTTCSEEEEEEEETTEEEEEEESSSCEEEEEEE
T ss_pred             ceEEEEEcCCCCEEEEEe-CCEEEEEECCCCC-EEEEEecCCCCCEEEEEEcCCeEEEEEECCCcEEEEEEe
Confidence            6665 5677888777665 8999999998644 222345689999999999977788889999998887654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.5e-34  Score=278.95  Aligned_cols=290  Identities=18%  Similarity=0.302  Sum_probs=237.4

Q ss_pred             cccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEE
Q 007283           49 QVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVR  128 (609)
Q Consensus        49 ~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~  128 (609)
                      ..++|.||++.|++++|+|+|++||||+.||+|+|||+.+++. ...+..|..+|.+++|+|++.++++++.+.   .++
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~-~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~---~i~  122 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNK-VHAIPLRSSWVMTCAYAPSGNYVACGGLDN---ICS  122 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEE-EEEEECSCSCEEEEEECTTSSEEEEEETTC---CEE
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeeccccee-EEEEecccccEEeeEeeccceeeeeecccc---eee
Confidence            3456889999999999999999999999999999999998764 346788999999999999999999988654   356


Q ss_pred             EEEcCCC----CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEE
Q 007283          129 AFMWDSG----TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFI  204 (609)
Q Consensus       129 ~~~~~~~----~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~  204 (609)
                      +|.+...    .....+.+|..........++.  .+.....|.....+.............+...+.+..+.+.+..++
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (340)
T d1tbga_         123 IYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN--QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV  200 (340)
T ss_dssp             EEESSSSCSCCCEEEEECCCSSCEEEEEEEETT--EEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             cccccccccccccceeccccccccccccccccc--ccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence            6665543    3345677888877776666654  477778888888888777666666677888899999999999999


Q ss_pred             EEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccc
Q 007283          205 SVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDD  284 (609)
Q Consensus       205 s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  284 (609)
                      +++.|+.+++||.++++.+..+.   +|.+.|++++|+|++++|++++.|+.|++|++..   ......+          
T Consensus       201 ~~~~d~~v~i~d~~~~~~~~~~~---~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~---~~~~~~~----------  264 (340)
T d1tbga_         201 SGACDASAKLWDVREGMCRQTFT---GHESDINAICFFPNGNAFATGSDDATCRLFDLRA---DQELMTY----------  264 (340)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEC---CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---TEEEEEE----------
T ss_pred             EeecCceEEEEECCCCcEEEEEe---CCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecc---ccccccc----------
Confidence            99999999999999998877663   7999999999999999999999999999999752   1000000          


Q ss_pred             eEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecc
Q 007283          285 MLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQR  364 (609)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~  364 (609)
                                                                       ...                            
T Consensus       265 -------------------------------------------------~~~----------------------------  267 (340)
T d1tbga_         265 -------------------------------------------------SHD----------------------------  267 (340)
T ss_dssp             -------------------------------------------------CCT----------------------------
T ss_pred             -------------------------------------------------ccc----------------------------
Confidence                                                             000                            


Q ss_pred             ccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEe
Q 007283          365 KENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTI  444 (609)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  444 (609)
                                                                                                      
T Consensus       268 --------------------------------------------------------------------------------  267 (340)
T d1tbga_         268 --------------------------------------------------------------------------------  267 (340)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEE
Q 007283          445 NLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWD  519 (609)
Q Consensus       445 ~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd  519 (609)
                      ....++.+++++|+++++++|+.||.|++||+.++.+  ...+.+|.+.|++++|+|++.+|+||+.|++|++||
T Consensus       268 ~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~--~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         268 NIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADR--AGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             TCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            0001356678899999999999999999999987655  467889999999999999999999999999999997

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.4e-34  Score=280.64  Aligned_cols=286  Identities=17%  Similarity=0.172  Sum_probs=220.6

Q ss_pred             CCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc
Q 007283          144 HSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI  223 (609)
Q Consensus       144 h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~  223 (609)
                      +.+.+..++++|++.. ++.++ ++.+.+|+..+.+....+.+|...|++++|+|+|++||+|+.|++|+|||..+++..
T Consensus        16 ~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          16 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            3445667899999986 55553 456899999988888888999999999999999999999999999999999887654


Q ss_pred             cccCcCCCCccceEEEEECCCCCeEEEEeC--CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEc
Q 007283          224 GELSPEDGHKGSVYAVSWSPDGKQVLTASA--DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSL  301 (609)
Q Consensus       224 ~~~~~~~~h~~~V~~l~~spd~~~l~s~s~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (609)
                      .... ..+|.+.|.+++|+|++++|++++.  +..+++|++...   +.                               
T Consensus        94 ~~~~-~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~---~~-------------------------------  138 (311)
T d1nr0a1          94 LKTT-IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---TS-------------------------------  138 (311)
T ss_dssp             EEEE-EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC---CB-------------------------------
T ss_pred             cccc-cccccCccccccccccccccccccccccccccccccccc---cc-------------------------------
Confidence            3321 2478999999999999999999986  456899987521   11                               


Q ss_pred             CCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEE
Q 007283          302 GGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIV  381 (609)
Q Consensus       302 ~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (609)
                                     ...+.+|...|.+++|++..+.++++|+.|+.|++|+........                    
T Consensus       139 ---------------~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~--------------------  183 (311)
T d1nr0a1         139 ---------------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKS--------------------  183 (311)
T ss_dssp             ---------------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEE--------------------
T ss_pred             ---------------cccccccccccccccccccceeeeccccccccccccccccccccc--------------------
Confidence                           123457888999999986555679999999999999764321000                    


Q ss_pred             EEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCE
Q 007283          382 TSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSE  461 (609)
Q Consensus       382 ~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~  461 (609)
                                                                                  ....+..++.+++++|++++
T Consensus       184 ------------------------------------------------------------~~~~~~~~i~~v~~~p~~~~  203 (311)
T d1nr0a1         184 ------------------------------------------------------------TFGEHTKFVHSVRYNPDGSL  203 (311)
T ss_dssp             ------------------------------------------------------------EECCCSSCEEEEEECTTSSE
T ss_pred             ------------------------------------------------------------ccccccccccccccCccccc
Confidence                                                                        00012245888999999999


Q ss_pred             EEEEeCCCcEEEEEecCCeeeee-----EEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCC--
Q 007283          462 AIIGSQDGKLRVYSIRGDTLTEE-----AVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHT--  534 (609)
Q Consensus       462 l~~gs~dg~i~iw~~~~~~~~~~-----~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~--  534 (609)
                      +++|+.|+.|++|+...+.....     ....+|.+.|.+++|+|++++|++|+.|++|++||+.+.+. ++.+..|.  
T Consensus       204 l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~-~~~l~~~~~~  282 (311)
T d1nr0a1         204 FASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-EKTIPVGTRI  282 (311)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEECCSSG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcE-EEEEECCCCc
Confidence            99999999999999876543211     12346899999999999999999999999999999887764 33444443  


Q ss_pred             -CceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          535 -ARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       535 -~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                       ..+.++.|  ++.+|++++.||.|++||++
T Consensus       283 ~~~~~~~~~--~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         283 EDQQLGIIW--TKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             GGCEEEEEE--CSSCEEEEETTCCEEEEETT
T ss_pred             cceEEEEEe--cCCEEEEEECCCEEEEEeCC
Confidence             23445555  56679999999999999964

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.7e-35  Score=289.72  Aligned_cols=307  Identities=17%  Similarity=0.192  Sum_probs=223.9

Q ss_pred             CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc--eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283          145 SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       145 ~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                      .++|++++|+|++.. +|+|+.|+.|++|+....+  ....+.+|...|++++|+|++++|++|+.|+++++||..++..
T Consensus         7 ~~pIt~~~~s~dg~~-la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~   85 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQ-IAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW   85 (371)
T ss_dssp             SSCCCEEEECTTSSE-EEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE
T ss_pred             CCCeEEEEECCCCCE-EEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc
Confidence            468999999999985 8999999999999976554  5567889999999999999999999999999999999877654


Q ss_pred             ccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcC
Q 007283          223 IGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLG  302 (609)
Q Consensus       223 ~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (609)
                      ...+. ..+|...|.+++|+|++++|++++.|+++++|++.........                               
T Consensus        86 ~~~~~-~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~-------------------------------  133 (371)
T d1k8kc_          86 KPTLV-ILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVC-------------------------------  133 (371)
T ss_dssp             EEEEE-CCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEE-------------------------------
T ss_pred             ccccc-cccccccccccccccccccceeecccCcceeeeeecccccccc-------------------------------
Confidence            33332 2478899999999999999999999999999987532110000                               


Q ss_pred             CcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEE
Q 007283          303 GTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVT  382 (609)
Q Consensus       303 g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (609)
                                    ......|...|.++++++ ++.++++|+.|+++++|+......                       
T Consensus       134 --------------~~~~~~~~~~v~~v~~~p-~~~~l~s~s~D~~v~v~~~~~~~~-----------------------  175 (371)
T d1k8kc_         134 --------------KHIKKPIRSTVLSLDWHP-NSVLLAAGSCDFKCRIFSAYIKEV-----------------------  175 (371)
T ss_dssp             --------------EEECTTCCSCEEEEEECT-TSSEEEEEETTSCEEEEECCCTTT-----------------------
T ss_pred             --------------cccccccccccccccccc-cccceeccccCcEEEEEeeccCcc-----------------------
Confidence                          011234667778887764 456788888888888885421100                       


Q ss_pred             EeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEE
Q 007283          383 SGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEA  462 (609)
Q Consensus       383 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l  462 (609)
                                     .                                        ..         .   ...+.+.  
T Consensus       176 ---------------~----------------------------------------~~---------~---~~~~~~~--  186 (371)
T d1k8kc_         176 ---------------E----------------------------------------ER---------P---APTPWGS--  186 (371)
T ss_dssp             ---------------S----------------------------------------CC---------C---CCBTTBS--
T ss_pred             ---------------c----------------------------------------cc---------c---ccccccc--
Confidence                           0                                        00         0   0000000  


Q ss_pred             EEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEE
Q 007283          463 IIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAW  542 (609)
Q Consensus       463 ~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~  542 (609)
                                  +...+.  ......+|.+.|.+++|+|+++++++++.|+++++||..+... +..+..|..+|++++|
T Consensus       187 ------------~~~~~~--~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~s~~f  251 (371)
T d1k8kc_         187 ------------KMPFGE--LMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMA-VATLASETLPLLAVTF  251 (371)
T ss_dssp             ------------CCCTTC--EEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTE-EEEEECSSCCEEEEEE
T ss_pred             ------------ccccee--eeeeccCccCcEEEEEeecccccccccccCCcceEEeeecccc-eeeeecccccceeeee
Confidence                        000011  1234567899999999999999999999999999999877654 4456789999999999


Q ss_pred             CCCCcEEEEEeCCCeEEEEEcCCCCCcc---------------------------------------eeEeccccCCeEE
Q 007283          543 SPNNSMVATGSLDTCVIIYEIDKPASSR---------------------------------------MTIKGAHLGGVYG  583 (609)
Q Consensus       543 s~d~~~l~s~s~D~~v~vw~~~~~~~~~---------------------------------------~~~~~~h~~~v~~  583 (609)
                      +||+++|++|+ |+.+++|..+......                                       ......|.+.|++
T Consensus       252 s~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~  330 (371)
T d1k8kc_         252 ITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQ  330 (371)
T ss_dssp             EETTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEE
T ss_pred             cCCCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceecccccCCEEE
Confidence            99999888765 6777776543211000                                       0011248899999


Q ss_pred             EEEcC-C----CeEEEEeCCCcEEEEEcc
Q 007283          584 LAFTD-E----HSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       584 ~~~s~-~----~~l~s~s~D~~i~~W~~~  607 (609)
                      +++.+ .    ..++|+|.||.|++|+++
T Consensus       331 i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~  359 (371)
T d1k8kc_         331 ISVLSGGKAKCSQFCTTGMDGGMSIWDVR  359 (371)
T ss_dssp             EEEEESTTTSCSEEEEEETTSEEEEEEHH
T ss_pred             EEEeCCCCcceEEEEEEcCCCeEEEEeCC
Confidence            99862 2    358899999999999984

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.2e-34  Score=289.05  Aligned_cols=307  Identities=15%  Similarity=0.196  Sum_probs=223.7

Q ss_pred             CCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC
Q 007283           57 AYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT  136 (609)
Q Consensus        57 ~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  136 (609)
                      .++|+|++|||||++||+|+.|++|+|||..+++...                                           
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~-------------------------------------------   43 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQ-------------------------------------------   43 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEE-------------------------------------------
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEE-------------------------------------------
Confidence            5789999999999999999999999999986653211                                           


Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCc--eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEE
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFK--FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGII  214 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~--~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~i  214 (609)
                       +..+.+|.+.|.+++|+|++.+ |++|+.|+.+++|+.....  ....+.+|...|++++|+|+++.|++++.|+++++
T Consensus        44 -~~~l~gH~~~V~~l~fsp~~~~-l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i  121 (371)
T d1k8kc_          44 -VHELKEHNGQVTGVDWAPDSNR-IVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISI  121 (371)
T ss_dssp             -EEEEECCSSCEEEEEEETTTTE-EEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEE
T ss_pred             -EEEecCCCCCEEEEEECCCCCE-EEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCccee
Confidence             1235678888888888888774 8888999999999876554  34556789999999999999999999999999999


Q ss_pred             EeCCCCcccccc-CcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcC
Q 007283          215 YDGKTADKIGEL-SPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQN  293 (609)
Q Consensus       215 wd~~~~~~~~~~-~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (609)
                      |+.......... ....+|...|.+++|+|++++|++++.|+++++|++.......   ...                  
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~---~~~------------------  180 (371)
T d1k8kc_         122 CYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEE---RPA------------------  180 (371)
T ss_dssp             EEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSC---CCC------------------
T ss_pred             eeeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCcccc---ccc------------------
Confidence            987665432221 1234688999999999999999999999999999975311000   000                  


Q ss_pred             CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEe
Q 007283          294 DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCF  373 (609)
Q Consensus       294 ~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~  373 (609)
                                           ....   ...         ......+.                                
T Consensus       181 ---------------------~~~~---~~~---------~~~~~~~~--------------------------------  195 (371)
T d1k8kc_         181 ---------------------PTPW---GSK---------MPFGELMF--------------------------------  195 (371)
T ss_dssp             ---------------------CBTT---BSC---------CCTTCEEE--------------------------------
T ss_pred             ---------------------cccc---ccc---------ccceeeee--------------------------------
Confidence                                 0000   000         00000000                                


Q ss_pred             eeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEE
Q 007283          374 AAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTAS  453 (609)
Q Consensus       374 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (609)
                                                                                          ....+...+.++
T Consensus       196 --------------------------------------------------------------------~~~~~~~~v~~~  207 (371)
T d1k8kc_         196 --------------------------------------------------------------------ESSSSCGWVHGV  207 (371)
T ss_dssp             --------------------------------------------------------------------ECCCCSSCEEEE
T ss_pred             --------------------------------------------------------------------eccCccCcEEEE
Confidence                                                                                000012347788


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCC--ceEEe---
Q 007283          454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSR--EVKLK---  528 (609)
Q Consensus       454 ~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~--~~~~~---  528 (609)
                      +++|+|+++++++.|+.|++||+..+..  ...+..|..+|.+++|+||++++++|+ |+.+++|+....  .....   
T Consensus       208 ~~s~~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~  284 (371)
T d1k8kc_         208 CFSANGSRVAWVSHDSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRL  284 (371)
T ss_dssp             EECSSSSEEEEEETTTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETTTTEEEECCCC
T ss_pred             EeecccccccccccCCcceEEeeecccc--eeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCCCceEEEeeee
Confidence            9999999999999999999999987654  456788999999999999999988765 666666543221  11000   


Q ss_pred             -----------------------------------eecCCCCceEEEEECCCC----cEEEEEeCCCeEEEEEcCC
Q 007283          529 -----------------------------------NMLYHTARINCLAWSPNN----SMVATGSLDTCVIIYEIDK  565 (609)
Q Consensus       529 -----------------------------------~~~~h~~~i~~l~~s~d~----~~l~s~s~D~~v~vw~~~~  565 (609)
                                                         ....|...|+++++.|.+    ..++|++.||.|++||+..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         285 DVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cCccccccccccceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                               011388899999998754    4689999999999999853

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=5.3e-33  Score=268.23  Aligned_cols=291  Identities=14%  Similarity=0.179  Sum_probs=217.9

Q ss_pred             eeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec-cCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          137 NVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH-RGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       137 ~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      ....+.||.+.|++++|+|++.+ |++|+.|+.|++||..+++....+ .+|...|++++|+|+|. +++++.|+.+++|
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~-l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~   81 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVV   81 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             cceEcCCCCCCcEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEe
Confidence            45678899999999999999985 999999999999999988877776 47999999999999997 5667789999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF  295 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (609)
                      +...............+...+.+++|+|+++++++++ ++.+++|+..     +.....                     
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~-----~~~~~~---------------------  134 (299)
T d1nr0a2          82 PAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHG-----KLTEVP---------------------  134 (299)
T ss_dssp             CSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETT-----EEEEEE---------------------
T ss_pred             ccCCccccccccccccccccccccccccccccccccc-cccccccccc-----cccccc---------------------
Confidence            8765432221111234677899999999999887765 5689999843     111110                     


Q ss_pred             EEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee
Q 007283          296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA  375 (609)
Q Consensus       296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~  375 (609)
                                                 ....+.+++++ +++.++++++.||.|++|+.......               
T Consensus       135 ---------------------------~~~~~~~~~~s-~~~~~l~~g~~dg~i~~~d~~~~~~~---------------  171 (299)
T d1nr0a2         135 ---------------------------ISYNSSCVALS-NDKQFVAVGGQDSKVHVYKLSGASVS---------------  171 (299)
T ss_dssp             ---------------------------CSSCEEEEEEC-TTSCEEEEEETTSEEEEEEEETTEEE---------------
T ss_pred             ---------------------------ccccccccccc-cccccccccccccccccccccccccc---------------
Confidence                                       11123445554 35578999999999999975321000               


Q ss_pred             eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEE
Q 007283          376 IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI  455 (609)
Q Consensus       376 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (609)
                                                                                      ......+..++.++++
T Consensus       172 ----------------------------------------------------------------~~~~~~~~~~i~~~~~  187 (299)
T d1nr0a2         172 ----------------------------------------------------------------EVKTIVHPAEITSVAF  187 (299)
T ss_dssp             ----------------------------------------------------------------EEEEEECSSCEEEEEE
T ss_pred             ----------------------------------------------------------------cccccccccccccccc
Confidence                                                                            0001112345888999


Q ss_pred             cCCCCEEEEEeCCCcEEEEEecCCee-eeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceE-EeeecC-
Q 007283          456 APDGSEAIIGSQDGKLRVYSIRGDTL-TEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVK-LKNMLY-  532 (609)
Q Consensus       456 sp~g~~l~~gs~dg~i~iw~~~~~~~-~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~-~~~~~~-  532 (609)
                      +|+++++++|+.|+.|++|++..+.. .....+.+|...|.+++|+|++.++++|+.|++|++||+.+.... ...... 
T Consensus       188 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~  267 (299)
T d1nr0a2         188 SNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAH  267 (299)
T ss_dssp             CTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCC
Confidence            99999999999999999999876532 233456789999999999999999999999999999998765432 222223 


Q ss_pred             CCCceEEEEECCCCcEEEEEeCCCeEEEEEcC
Q 007283          533 HTARINCLAWSPNNSMVATGSLDTCVIIYEID  564 (609)
Q Consensus       533 h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~  564 (609)
                      +...|.++.| +++++|++|+.|++|++||++
T Consensus       268 ~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         268 AMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             TTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred             CCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence            4456777755 567889999999999999974

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.5e-32  Score=267.83  Aligned_cols=330  Identities=19%  Similarity=0.319  Sum_probs=217.0

Q ss_pred             EeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          173 YEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       173 ~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                      |+..+.+....++||.+.|.+ +++++|++||||+.|++|+|||..+++.+..+   .+|.+.|.+++|+|+  +|++++
T Consensus         1 W~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~---~~h~~~V~~v~~~~~--~l~s~s   74 (342)
T d2ovrb2           1 WRRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTL---VGHTGGVWSSQMRDN--IIISGS   74 (342)
T ss_dssp             HHHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEEC---CCCSSCEEEEEEETT--EEEEEE
T ss_pred             CCCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEE---eCCCCCEEEEEeCCC--ccccce
Confidence            444556677788999998865 36678999999999999999999999988776   489999999999875  899999


Q ss_pred             CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283          253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV  332 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~  332 (609)
                      .|+.+++|+...   ..........     ..........+.....+..++.+.+|+.. .......+..+..... .. 
T Consensus        75 ~D~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~d~~i~~~~~~-~~~~~~~~~~~~~~~~-~~-  143 (342)
T d2ovrb2          75 TDRTLKVWNAET---GECIHTLYGH-----TSTVRCMHLHEKRVVSGSRDATLRVWDIE-TGQCLHVLMGHVAAVR-CV-  143 (342)
T ss_dssp             TTSCEEEEETTT---TEEEEEECCC-----SSCEEEEEEETTEEEEEETTSEEEEEESS-SCCEEEEEECCSSCEE-EE-
T ss_pred             eccccccccccc---ccceeccccc-----ceeEeeeecccccccccccceeEEEeecc-cccceeeeecccccce-ee-
Confidence            999999999753   1111111100     00111122233444444555555555421 1111111111111111 11 


Q ss_pred             ecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCc
Q 007283          333 LNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPK  412 (609)
Q Consensus       333 ~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~  412 (609)
                       ......++.++.|+.|++|+                                        ......             
T Consensus       144 -~~~~~~~~~~~~d~~i~~~d----------------------------------------~~~~~~-------------  169 (342)
T d2ovrb2         144 -QYDGRRVVSGAYDFMVKVWD----------------------------------------PETETC-------------  169 (342)
T ss_dssp             -EECSSCEEEEETTSCEEEEE----------------------------------------GGGTEE-------------
T ss_pred             -ccccceeeeecCCCeEEEee----------------------------------------ccccee-------------
Confidence             11224444444444444443                                        221110             


Q ss_pred             eeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCC
Q 007283          413 DLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG  492 (609)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~  492 (609)
                                                  ...+. ........+++++.++++|+.||.|++|+++....  ...+.+|..
T Consensus       170 ----------------------------~~~~~-~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~--~~~~~~~~~  218 (342)
T d2ovrb2         170 ----------------------------LHTLQ-GHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQS  218 (342)
T ss_dssp             ----------------------------EEEEC-CCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCE--EEEECCCCS
T ss_pred             ----------------------------eEEEc-CcccccccccCCCCEEEEEeCCCeEEEeeccccee--eeEeccccc
Confidence                                        00000 01123345567899999999999999999987654  456788999


Q ss_pred             ceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEe--eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcc
Q 007283          493 AVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLK--NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSR  570 (609)
Q Consensus       493 ~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~--~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~  570 (609)
                      .+.++++++  .++++++.|+++++||....+....  ....|...+.++.++  ++++++|+.||+|++||+.++. ..
T Consensus       219 ~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~-~i  293 (342)
T d2ovrb2         219 LTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGE-FI  293 (342)
T ss_dssp             CEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCC-EE
T ss_pred             ceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCC-EE
Confidence            999887765  6999999999999999877654322  123466777777775  5689999999999999998643 22


Q ss_pred             eeE----eccccCCeEEEEEc-CCCeEEEEeCCCc----EEEEEccCC
Q 007283          571 MTI----KGAHLGGVYGLAFT-DEHSVVSSGEDAC----VRVWRLTPN  609 (609)
Q Consensus       571 ~~~----~~~h~~~v~~~~~s-~~~~l~s~s~D~~----i~~W~~~~~  609 (609)
                      ..+    ..+|.+.|++++|+ ++..+++|+.||+    |++||++.+
T Consensus       294 ~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         294 RNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             EEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             EEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence            122    24688899999999 5567888999986    999999753

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-33  Score=273.08  Aligned_cols=200  Identities=21%  Similarity=0.309  Sum_probs=152.1

Q ss_pred             cccccCCCCc-EEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           51 SIYGEHAYPA-TVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        51 ~~~~~h~~~v-~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      .+|.||.+.| +|+  +++|++||||+.||+|+|||+.+++. ...+.+|.++|.+++|+|++ +|++++.+.   .+++
T Consensus         6 ~tL~GH~~~vitc~--~~~~~~l~tgs~Dg~i~vWd~~~~~~-~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~---~i~i   78 (355)
T d1nexb2           6 TTLRGHMTSVITCL--QFEDNYVITGADDKMIRVYDSINKKF-LLQLSGHDGGVWALKYAHGG-ILVSGSTDR---TVRV   78 (355)
T ss_dssp             EEEECCSSSCEEEE--EEETTEEEEEETTTEEEEEETTTTEE-EEEEECCSSCEEEEEEETTT-EEEEEETTC---CEEE
T ss_pred             EEECCcCCCcEEEE--EECCCEEEEEeCCCeEEEEECCCCcE-EEEEECCCCCEEEEEEcCCC-EEEEEeccc---cccc
Confidence            4588999886 554  55789999999999999999998764 45788999999999999976 777777544   4678


Q ss_pred             EEcCCCCeeEEEecCC--ccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeee-----------------------c
Q 007283          130 FMWDSGTNVGEFDGHS--RRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLS-----------------------H  184 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~-----------------------~  184 (609)
                      |++...........+.  .....+.++|++. .+++++.|+.+++|+.+.......                       .
T Consensus        79 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          79 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIK-YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEEEETTEE-EEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             ccccccccccccccccccccccccccccccc-eeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            8887776655544333  3445566677765 589999999999999765432211                       1


Q ss_pred             cCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          185 RGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       185 ~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      ..|...+  ..+.++++.++++..|+.+++||..+++.+...   .++...+.++.|+|++.++++++.|++|++||+.
T Consensus       158 ~~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~  231 (355)
T d1nexb2         158 RGHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL---SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE  231 (355)
T ss_dssp             ECCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEE---CCCSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             eeccccc--cccccccceeeeecccceeeeeecccccceeee---eccccccccccccccceeeecccccceEEeeecc
Confidence            1222333  345567889999999999999999988876655   3677889999999999999999999999999975

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-31  Score=261.48  Aligned_cols=331  Identities=20%  Similarity=0.282  Sum_probs=239.2

Q ss_pred             eCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCC
Q 007283           43 DLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGK  122 (609)
Q Consensus        43 ~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~  122 (609)
                      +..+.+...++.||++.|.+ +++++|++||||+.||+|+|||+.+++. ...+..|.+.|.+++|+|+  +|++++.+.
T Consensus         2 ~~~~~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~-~~~~~~h~~~V~~v~~~~~--~l~s~s~D~   77 (342)
T d2ovrb2           2 RRGELKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-LRTLVGHTGGVWSSQMRDN--IIISGSTDR   77 (342)
T ss_dssp             HHSCCCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-EEECCCCSSCEEEEEEETT--EEEEEETTS
T ss_pred             CCCCCCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCE-EEEEeCCCCCEEEEEeCCC--ccccceecc
Confidence            33444555678999999865 4778899999999999999999998774 4568889999999999986  777776544


Q ss_pred             CcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCE
Q 007283          123 GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSK  202 (609)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  202 (609)
                         .+++|.............+...+......+.   .+..+..|..+.+|+..+.+....+..+.....  .+.+....
T Consensus        78 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  149 (342)
T d2ovrb2          78 ---TLKVWNAETGECIHTLYGHTSTVRCMHLHEK---RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR--CVQYDGRR  149 (342)
T ss_dssp             ---CEEEEETTTTEEEEEECCCSSCEEEEEEETT---EEEEEETTSEEEEEESSSCCEEEEEECCSSCEE--EEEECSSC
T ss_pred             ---cccccccccccceecccccceeEeeeecccc---cccccccceeEEEeecccccceeeeecccccce--eeccccce
Confidence               4677777766665556666666666555443   477888999999999988777666554444333  34455667


Q ss_pred             EEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCc
Q 007283          203 FISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV  282 (609)
Q Consensus       203 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  282 (609)
                      +++++.|+.+++||....+.+..+   .+|...+..+.  +++.++++++.|++|++||+..   ++...          
T Consensus       150 ~~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~~--~~~~~l~s~~~dg~i~~~d~~~---~~~~~----------  211 (342)
T d2ovrb2         150 VVSGAYDFMVKVWDPETETCLHTL---QGHTNRVYSLQ--FDGIHVVSGSLDTSIRVWDVET---GNCIH----------  211 (342)
T ss_dssp             EEEEETTSCEEEEEGGGTEEEEEE---CCCSSCEEEEE--ECSSEEEEEETTSCEEEEETTT---CCEEE----------
T ss_pred             eeeecCCCeEEEeecccceeeEEE---cCccccccccc--CCCCEEEEEeCCCeEEEeeccc---ceeee----------
Confidence            899999999999998887776655   36766665554  4788999999999999999862   22211          


Q ss_pred             cceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccccee
Q 007283          283 DDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKL  362 (609)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~  362 (609)
                                                          .+.+|...+.++.+.   ++++++++.|+.|++|+.........
T Consensus       212 ------------------------------------~~~~~~~~v~~~~~~---~~~l~s~s~d~~i~iwd~~~~~~~~~  252 (342)
T d2ovrb2         212 ------------------------------------TLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQT  252 (342)
T ss_dssp             ------------------------------------EECCCCSCEEEEEEE---TTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             ------------------------------------EecccccceeEEecC---CCEEEEEcCCCEEEEEeccccccccc
Confidence                                                233466677777664   36899999999999997643210000


Q ss_pred             ccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeE
Q 007283          363 QRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVS  442 (609)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  442 (609)
                                                   +  ...                                             
T Consensus       253 -----------------------------~--~~~---------------------------------------------  256 (342)
T d2ovrb2         253 -----------------------------L--QGP---------------------------------------------  256 (342)
T ss_dssp             -----------------------------E--CST---------------------------------------------
T ss_pred             -----------------------------c--ccc---------------------------------------------
Confidence                                         0  000                                             


Q ss_pred             EeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEE---EecCCCceEEEEECCCCCEEEEEeCCCe----E
Q 007283          443 TINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAV---LEKHRGAVSVIRYSPDVSMFASGDVNRE----A  515 (609)
Q Consensus       443 ~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~---~~~h~~~i~~v~~s~~~~~l~s~s~d~~----v  515 (609)
                       ..+...+.+  +++++.++++|+.||+|++||++++++.....   ..+|.+.|++++|+|++.++|+|+.||+    +
T Consensus       257 -~~~~~~~~~--~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l  333 (342)
T d2ovrb2         257 -NKHQSAVTC--LQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKL  333 (342)
T ss_dssp             -TSCSSCEEE--EEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEE
T ss_pred             -ceeeeceee--cccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEE
Confidence             000112333  44566799999999999999998876543222   1367889999999999999999999985    9


Q ss_pred             EEEEcc
Q 007283          516 IVWDRV  521 (609)
Q Consensus       516 ~iwd~~  521 (609)
                      ++||+.
T Consensus       334 ~~~Df~  339 (342)
T d2ovrb2         334 LVLDFD  339 (342)
T ss_dssp             EEEECC
T ss_pred             EEEeCC
Confidence            999974

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.4e-32  Score=258.94  Aligned_cols=272  Identities=25%  Similarity=0.399  Sum_probs=202.4

Q ss_pred             ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283          179 KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK  258 (609)
Q Consensus       179 ~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~  258 (609)
                      +.++.+.||..+|++++|+|    |++|+.||+|++||..++.        .+|...|.++.|++++ .+++++.|++++
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~--------~~h~~~V~~~~~~~~~-~~~s~s~D~~v~   70 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH--------QDHSNLIVSLDNSKAQ-EYSSISWDDTLK   70 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE--------CCCCSCEEEEECCSTT-CCEEEETTTEEE
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC--------CCCCCCEEEEEecCCC-eEEEEeeccccc
Confidence            45677899999999999987    8999999999999977642        3689999999999765 578999999999


Q ss_pred             EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283          259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK  338 (609)
Q Consensus       259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  338 (609)
                      +|++...       .+                                                 ...+..+.+.+ + .
T Consensus        71 ~w~~~~~-------~~-------------------------------------------------~~~~~~~~~~~-~-~   92 (287)
T d1pgua2          71 VNGITKH-------EF-------------------------------------------------GSQPKVASANN-D-G   92 (287)
T ss_dssp             ETTEEEE-------EC-------------------------------------------------SSCEEEEEECS-S-S
T ss_pred             ccccccc-------cc-------------------------------------------------ccceeeeeecc-C-C
Confidence            9986420       00                                                 00111222221 2 2


Q ss_pred             EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283          339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL  418 (609)
Q Consensus       339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (609)
                      .++..+.++.+.+|+...+..                                                           
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------------------  113 (287)
T d1pgua2          93 FTAVLTNDDDLLILQSFTGDI-----------------------------------------------------------  113 (287)
T ss_dssp             EEEEEETTSEEEEEETTTCCE-----------------------------------------------------------
T ss_pred             ceEEEeecccceeeeccceee-----------------------------------------------------------
Confidence            333334455566664322100                                                           


Q ss_pred             cCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCC-cEEEEEecCCeeeeeEEEecCCCceEEE
Q 007283          419 HYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDG-KLRVYSIRGDTLTEEAVLEKHRGAVSVI  497 (609)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg-~i~iw~~~~~~~~~~~~~~~h~~~i~~v  497 (609)
                                            ...+..  .....+++|++..+++++.|+ .+++|++...... ......|.+.|+++
T Consensus       114 ----------------------~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~-~~~~~~~~~~v~~~  168 (287)
T d1pgua2         114 ----------------------IKSVRL--NSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVS-FDLKTPLRAKPSYI  168 (287)
T ss_dssp             ----------------------EEEEEC--SSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEE-EECSSCCSSCEEEE
T ss_pred             ----------------------eeeccc--cceeeeeeccCcceeeeccccceeeeeecccccee-eeeeeccCCceeEE
Confidence                                  000000  112345677888888888875 7999998644322 22234578899999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCC----------CcEEEEEeCCCeEEEEEcCCCC
Q 007283          498 RYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN----------NSMVATGSLDTCVIIYEIDKPA  567 (609)
Q Consensus       498 ~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d----------~~~l~s~s~D~~v~vw~~~~~~  567 (609)
                      +|+|++.+|++|+.|+.+++||+.+.+.....+..|...|++++|+|+          +.+|++|+.|++|++|++..+.
T Consensus       169 ~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         169 SISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             EeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence            999999999999999999999998877655557789999999999875          4689999999999999997644


Q ss_pred             CcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEEc
Q 007283          568 SSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       568 ~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~  606 (609)
                       .....+.+|...|++++|+++..|+|+|.|++|++|++
T Consensus       249 -~~~~~~~~h~~~V~~v~~~~~~~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 -KIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWNV  286 (287)
T ss_dssp             -CCEEETTSSTTCEEEEEEEETTEEEEEETTSCEEEEEE
T ss_pred             -eEEEEeCCCCCCeEEEEECCCCEEEEEECCCeEEEEEE
Confidence             45667789999999999997788999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.5e-28  Score=246.59  Aligned_cols=318  Identities=15%  Similarity=0.135  Sum_probs=202.5

Q ss_pred             eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC---cCCCCccceEEEE------ECC-CCCeEEEEe
Q 007283          183 SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS---PEDGHKGSVYAVS------WSP-DGKQVLTAS  252 (609)
Q Consensus       183 ~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~h~~~V~~l~------~sp-d~~~l~s~s  252 (609)
                      ..++|...|.++++++  ++|+|++.|++|+|||..+.+......   ....|...+..+.      ..+ ++.++++++
T Consensus         9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~   86 (393)
T d1sq9a_           9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS   86 (393)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred             cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence            3578999999999875  589999999999999976554321110   0112333332222      222 345788999


Q ss_pred             CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEE
Q 007283          253 ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTV  332 (609)
Q Consensus       253 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~  332 (609)
                      .||.+++|++...............                                  .     .....+...+..+.+
T Consensus        87 ~dg~v~~w~~~~~~~~~~~~~~~~~----------------------------------~-----~~~~~~~~~~~~~~~  127 (393)
T d1sq9a_          87 FSGDLLFYRITREDETKKVIFEKLD----------------------------------L-----LDSDMKKHSFWALKW  127 (393)
T ss_dssp             TTSCEEEEEEEECTTTCCEEEEEEC----------------------------------C-----SCTTGGGSCEEEEEE
T ss_pred             CCCcEEEEEccCCCceeeeeccccc----------------------------------e-----eeeccCCCceEEEEE
Confidence            9999999997543221111110000                                  0     000112333444444


Q ss_pred             ecC----CCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccC
Q 007283          333 LNI----DPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIG  408 (609)
Q Consensus       333 ~~~----~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  408 (609)
                      ...    ....+++++.||++++|+...............         .                              
T Consensus       128 ~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~---------~------------------------------  168 (393)
T d1sq9a_         128 GASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW---------S------------------------------  168 (393)
T ss_dssp             ECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC---------C------------------------------
T ss_pred             ecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee---------c------------------------------
Confidence            321    235788999999999997643211000000000         0                              


Q ss_pred             CCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeee----e
Q 007283          409 SQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE----E  484 (609)
Q Consensus       409 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~----~  484 (609)
                                   ......          ............+.+++++|++ ++|+|+.|++|++||+.++....    .
T Consensus       169 -------------~~~~~~----------~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~  224 (393)
T d1sq9a_         169 -------------PTLELQ----------GTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQ  224 (393)
T ss_dssp             -------------CEEEEE----------EEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECC
T ss_pred             -------------cceecc----------cceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccc
Confidence                         000000          0000000112346789999998 88999999999999998765432    2


Q ss_pred             EEEecCCCceEEEEECCCCCEEEEEeCCCe---EEEEEccCCceEEe------------eecCCCCceEEEEECCCCcEE
Q 007283          485 AVLEKHRGAVSVIRYSPDVSMFASGDVNRE---AIVWDRVSREVKLK------------NMLYHTARINCLAWSPNNSMV  549 (609)
Q Consensus       485 ~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~---v~iwd~~~~~~~~~------------~~~~h~~~i~~l~~s~d~~~l  549 (609)
                      ..+.+|..+|.+|+|+|||++|++|+.|++   +++||+.+++....            .+.+|...|++++|+||+++|
T Consensus       225 ~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l  304 (393)
T d1sq9a_         225 HSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETL  304 (393)
T ss_dssp             C---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEE
T ss_pred             cccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCee
Confidence            345689999999999999999999999874   89999887654221            234799999999999999999


Q ss_pred             EEEeCCCeEEEEEcCCCCCcceeEecccc---------------------CCeEEEEEcC-C----------CeEEEEeC
Q 007283          550 ATGSLDTCVIIYEIDKPASSRMTIKGAHL---------------------GGVYGLAFTD-E----------HSVVSSGE  597 (609)
Q Consensus       550 ~s~s~D~~v~vw~~~~~~~~~~~~~~~h~---------------------~~v~~~~~s~-~----------~~l~s~s~  597 (609)
                      +||+.|++|+|||+.++  ..+..+.+|.                     +.++++.|.+ +          +.+++++.
T Consensus       305 ~S~s~D~~v~vWd~~~g--~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (393)
T d1sq9a_         305 CSAGWDGKLRFWDVKTK--ERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCL  382 (393)
T ss_dssp             EEEETTSEEEEEETTTT--EEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEET
T ss_pred             EEECCCCEEEEEECCCC--CEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEc
Confidence            99999999999999864  3444455664                     3567787742 1          34899999


Q ss_pred             CCcEEEEEc
Q 007283          598 DACVRVWRL  606 (609)
Q Consensus       598 D~~i~~W~~  606 (609)
                      |++|++|.-
T Consensus       383 d~~ir~~~~  391 (393)
T d1sq9a_         383 DRSIRWFRE  391 (393)
T ss_dssp             TTEEEEEEE
T ss_pred             CCeEEEEeC
Confidence            999999963

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.3e-29  Score=237.82  Aligned_cols=272  Identities=14%  Similarity=0.210  Sum_probs=200.2

Q ss_pred             CeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEE
Q 007283          136 TNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIY  215 (609)
Q Consensus       136 ~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iw  215 (609)
                      +.+.++.+|..+|++++|+|     |++|+.|+.|++||..+.     ..+|...|.++.|++++ .+++++.|+++++|
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w   72 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVN   72 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCSTT-CCEEEETTTEEEET
T ss_pred             ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCCC-eEEEEeeccccccc
Confidence            34678999999999999987     899999999999997643     45799999999999775 57999999999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF  295 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (609)
                      +....+          +...+..+.+++++..+++++ ++.+.+|+...   +.....+..                   
T Consensus        73 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~~~~-------------------  119 (287)
T d1pgua2          73 GITKHE----------FGSQPKVASANNDGFTAVLTN-DDDLLILQSFT---GDIIKSVRL-------------------  119 (287)
T ss_dssp             TEEEEE----------CSSCEEEEEECSSSEEEEEET-TSEEEEEETTT---CCEEEEEEC-------------------
T ss_pred             cccccc----------cccceeeeeeccCCceEEEee-cccceeeeccc---eeeeeeccc-------------------
Confidence            865432          234577889999988777665 56788887642   222222110                   


Q ss_pred             EEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEec-CCcEEEEecCccccceeccccccceeEee
Q 007283          296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSY-DGLIVKWIQGIGYGGKLQRKENSQIKCFA  374 (609)
Q Consensus       296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~-dg~i~~W~~~~~~~~~~~~~~~~~~~~~~  374 (609)
                                                  ...+.++  .... ..++.++. ++.+++|+........             
T Consensus       120 ----------------------------~~~~~~~--~~~~-~~~~v~~~~~~~v~~~~~~~~~~~~-------------  155 (287)
T d1pgua2         120 ----------------------------NSPGSAV--SLSQ-NYVAVGLEEGNTIQVFKLSDLEVSF-------------  155 (287)
T ss_dssp             ----------------------------SSCEEEE--EECS-SEEEEEETTTSCEEEEETTEEEEEE-------------
T ss_pred             ----------------------------cceeeee--eccC-cceeeeccccceeeeeeccccceee-------------
Confidence                                        1111222  2222 34555554 4578999643210000             


Q ss_pred             eeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEE
Q 007283          375 AIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASA  454 (609)
Q Consensus       375 ~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  454 (609)
                                        .                                                ....+..++++++
T Consensus       156 ------------------~------------------------------------------------~~~~~~~~v~~~~  169 (287)
T d1pgua2         156 ------------------D------------------------------------------------LKTPLRAKPSYIS  169 (287)
T ss_dssp             ------------------E------------------------------------------------CSSCCSSCEEEEE
T ss_pred             ------------------e------------------------------------------------eeeccCCceeEEE
Confidence                              0                                                0001224588899


Q ss_pred             EcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCC----------CCEEEEEeCCCeEEEEEccCCc
Q 007283          455 IAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPD----------VSMFASGDVNREAIVWDRVSRE  524 (609)
Q Consensus       455 ~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~----------~~~l~s~s~d~~v~iwd~~~~~  524 (609)
                      ++|++.+|++|+.||.|++||+..+... ...+.+|.+.|.+++|+|+          +.++++|+.|+++++||+....
T Consensus       170 ~s~~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~  248 (287)
T d1pgua2         170 ISPSETYIAAGDVMGKILLYDLQSREVK-TSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM  248 (287)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTTTEEE-ECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred             eccCccccccccccccccceeecccccc-cccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence            9999999999999999999999876543 2345789999999999875          4689999999999999987755


Q ss_pred             eEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEc
Q 007283          525 VKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEI  563 (609)
Q Consensus       525 ~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~  563 (609)
                      .....+.+|...|++++|+|+++ |+|++.|++|++|++
T Consensus       249 ~~~~~~~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         249 KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNV  286 (287)
T ss_dssp             CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred             eEEEEeCCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence            55666778999999999999875 789999999999986

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.97  E-value=5.6e-30  Score=253.40  Aligned_cols=191  Identities=17%  Similarity=0.175  Sum_probs=158.4

Q ss_pred             EEEECC-CCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEE
Q 007283           62 VARFSP-NGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGE  140 (609)
Q Consensus        62 ~~~~sp-~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~  140 (609)
                      ...||| ||+++|+++ +|.|.|||..++....  + .|...|.+++|||||++|++++++.+ ..+++|+++.+. +..
T Consensus         7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~--~-~~~~~v~~~~~spDg~~l~~~~~~~g-~~v~v~d~~~~~-~~~   80 (360)
T d1k32a3           7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK--V-PEPLRIRYVRRGGDTKVAFIHGTREG-DFLGIYDYRTGK-AEK   80 (360)
T ss_dssp             EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE--C-SCCSCEEEEEECSSSEEEEEEEETTE-EEEEEEETTTCC-EEE
T ss_pred             cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE--c-cCCCCEEEEEECCCCCEEEEEEcCCC-CEEEEEECCCCc-EEE
Confidence            467999 999999986 5799999998776432  3 57889999999999999998886543 246667666554 456


Q ss_pred             EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe----------CCC
Q 007283          141 FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS----------SDK  210 (609)
Q Consensus       141 ~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~----------~d~  210 (609)
                      +..|...|..++|+|++.. +++++.++.+.+|+....+....+..|...+.+++|+|||++|+.+.          .++
T Consensus        81 ~~~~~~~v~~~~~spdg~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGKF-AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             CCCCCCSEEEEEECTTSSE-EEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             eeCCCceEEeeeecccccc-cceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence            7889999999999999985 89999999999999999888888888999999999999999998654          345


Q ss_pred             cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          211 KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       211 ~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .+.+|+..+++.....    .|...+..+.|+|||++|++++.|+.+++|+..
T Consensus       160 ~~~v~d~~~~~~~~~~----~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~  208 (360)
T d1k32a3         160 AIHVYDMEGRKIFAAT----TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV  208 (360)
T ss_dssp             EEEEEETTTTEEEECS----CSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred             ceeeeccccCceeeec----ccccccccccccCCCCEEEEEeCCCceEccccc
Confidence            6889999887654333    466778999999999999999999999999864

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=6.4e-28  Score=235.14  Aligned_cols=288  Identities=17%  Similarity=0.184  Sum_probs=213.3

Q ss_pred             CcEEEEECCCCCEEEEEeCCC-cEEEEcCCCCc-eeeEEEeec-ccceeEEEECC--CCCEEEEEECCCCcceEEEEEcC
Q 007283           59 PATVARFSPNGEWIASADVSG-TVRIWGAHNDH-VLKKEFRVL-SGRIDDLQWSP--DGLRIVACGDGKGKSLVRAFMWD  133 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~-~i~vWd~~~~~-~~~~~~~~~-~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~  133 (609)
                      .+++++|+|+|+.||.++.+. .|+.|+....+ .....+.+| ...|.+++|+|  +|++|++.+.+.   .+++|++.
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg---~i~iWd~~   95 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESG---KVIVWGWT   95 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTS---EEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCC---CEEEeeec
Confidence            467899999999999886554 46778765433 223456666 46799999998  567777766433   57888876


Q ss_pred             CCCe--------eEEEecCCccEEEEEEeeCCCeEEEEe-cCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCE-E
Q 007283          134 SGTN--------VGEFDGHSRRVLSCAFKPSRPFRIATC-GEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSK-F  203 (609)
Q Consensus       134 ~~~~--------~~~~~~h~~~v~~~~~~p~~~~~i~t~-~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~-l  203 (609)
                      .+..        ...+..|..+|.+++|+|++..+++++ +.+..+.+|+..+++....+.+|...|++++|+|++.. +
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~  175 (325)
T d1pgua1          96 FDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRS  175 (325)
T ss_dssp             EEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEE
T ss_pred             CCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceE
Confidence            4332        123567889999999999998644433 45778999999888888899999999999999999874 7


Q ss_pred             EEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCC-CCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCc
Q 007283          204 ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD-GKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGV  282 (609)
Q Consensus       204 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd-~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  282 (609)
                      ++++.|+.+++||....+.........+|...|++++|+|+ +.+|++++.|+.|++||++   .++....+.. +...+
T Consensus       176 ~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~---~~~~~~~l~~-~~~~v  251 (325)
T d1pgua1         176 MTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK---SGEFLKYIED-DQEPV  251 (325)
T ss_dssp             EEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT---TCCEEEECCB-TTBCC
T ss_pred             EEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeec---cccccccccc-ccccc
Confidence            78999999999998887766655545578889999999997 6889999999999999986   3555555542 22233


Q ss_pred             cceEEEEEEc-CCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCC--CeEEEEEecCCCCEEEEEecCCcEEEEec
Q 007283          283 DDMLVGCLWQ-NDFLVIVSLGGTISIFSANDLEKSPLQLSGHMK--NVTALTVLNIDPKVILSSSYDGLIVKWIQ  354 (609)
Q Consensus       283 ~~~~~~~~~~-~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~~~t~s~dg~i~~W~~  354 (609)
                      ........|. +.++++++.|+.|++|+++... ....+..|..  .+..+.+....+..+++++.||+|++|++
T Consensus       252 ~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         252 QGGIFALSWLDSQKFATVGADATIRVWDVTTSK-CVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CSCEEEEEESSSSEEEEEETTSEEEEEETTTTE-EEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred             ccceeeeeccCCCEEEEEeCCCeEEEEECCCCC-EEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence            4445555554 5689999999999999987532 2333444433  34444444333468999999999999974

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.3e-28  Score=238.96  Aligned_cols=301  Identities=11%  Similarity=0.101  Sum_probs=202.2

Q ss_pred             eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCC-CeEEEEeCCCcEE
Q 007283          180 FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDG-KQVLTASADKSAK  258 (609)
Q Consensus       180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~-~~l~s~s~d~~i~  258 (609)
                      .+....+|.+.|++|+|+|++++||+|+.|++|+|||+..+.....+....+|.+.|.+++|+|++ .+|++|+.|++|+
T Consensus         3 ~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~   82 (342)
T d1yfqa_           3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             eEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccccccee
Confidence            345567899999999999999999999999999999987665443333233699999999999874 5899999999999


Q ss_pred             EeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCC
Q 007283          259 VWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPK  338 (609)
Q Consensus       259 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  338 (609)
                      +|++...   .......                                              .+............+..
T Consensus        83 ~w~~~~~---~~~~~~~----------------------------------------------~~~~~~~~~~~~~~~~~  113 (342)
T d1yfqa_          83 KVDLIGS---PSFQALT----------------------------------------------NNEANLGICRICKYGDD  113 (342)
T ss_dssp             EECSSSS---SSEEECB----------------------------------------------SCCCCSCEEEEEEETTT
T ss_pred             eeecccc---ccccccc----------------------------------------------ccccccccccccccccc
Confidence            9998632   1111110                                              01111111222223447


Q ss_pred             EEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeec
Q 007283          339 VILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVAL  418 (609)
Q Consensus       339 ~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  418 (609)
                      .+++++.|+++++|+...........                           .....                      
T Consensus       114 ~~~~~~~~~~~~~wd~~~~~~~~~~~---------------------------~~~~~----------------------  144 (342)
T d1yfqa_         114 KLIAASWDGLIEVIDPRNYGDGVIAV---------------------------KNLNS----------------------  144 (342)
T ss_dssp             EEEEEETTSEEEEECHHHHTTBCEEE---------------------------EESCS----------------------
T ss_pred             cccccccccccceeeccccccceeee---------------------------ccccc----------------------
Confidence            89999999999999764321100000                           00000                      


Q ss_pred             cCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeee-eEEEecCCCceEEE
Q 007283          419 HYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTE-EAVLEKHRGAVSVI  497 (609)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~-~~~~~~h~~~i~~v  497 (609)
                                               ...........+.+++..+++++.|+.|++|++....... ......+...+.+.
T Consensus       145 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (342)
T d1yfqa_         145 -------------------------NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDV  199 (342)
T ss_dssp             -------------------------SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEE
T ss_pred             -------------------------ccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeee
Confidence                                     0000112344566788899999999999999987554322 12233444555555


Q ss_pred             EE-CCCCCEEEEEeCCCeEEEEEccCCceE--------Ee------eecCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283          498 RY-SPDVSMFASGDVNREAIVWDRVSREVK--------LK------NMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       498 ~~-s~~~~~l~s~s~d~~v~iwd~~~~~~~--------~~------~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                      .+ ++++..+++++.|+.+.+|+.......        ..      ....|...|++++|+|++++||||+.||+|++||
T Consensus       200 ~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             EECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             EeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence            55 556889999999999999986543211        10      1234667899999999999999999999999999


Q ss_pred             cCCCCCcceeEeccccCCeEEEEEc-CCCeEEEEeCCCcEEEEEc
Q 007283          563 IDKPASSRMTIKGAHLGGVYGLAFT-DEHSVVSSGEDACVRVWRL  606 (609)
Q Consensus       563 ~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~  606 (609)
                      +...+ .+..+...|..  ..++|+ +++.+++++.|.++++|..
T Consensus       280 ~~~~~-~l~~~~~~~~~--~~~~~s~~~~~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         280 LQTRK-KIKNFAKFNED--SVVKIACSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             TTTTE-EEEECCCCSSS--EEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred             CCCCc-EEEEecCCCCC--EEEEEEeCCCEEEEEEcCCcEEEeee
Confidence            98643 22233333444  455566 6678888888888888865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=9e-27  Score=222.38  Aligned_cols=275  Identities=24%  Similarity=0.383  Sum_probs=202.9

Q ss_pred             eeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEee
Q 007283          182 LSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWD  261 (609)
Q Consensus       182 ~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd  261 (609)
                      ..+.+|...|+|+.|  ||++||+|+.|++|+|||..+++.+..+   .+|.+.|++++|  ++++|++++.|+.|++|+
T Consensus         9 ~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l---~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~   81 (293)
T d1p22a2           9 HCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRIL---TGHTGSVLCLQY--DERVIITGSSDSTVRVWD   81 (293)
T ss_dssp             ECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEE---CCCSSCEEEEEC--CSSEEEEEETTSCEEEEE
T ss_pred             eccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEE---ecCCCCEeeeec--ccceeecccccccccccc
Confidence            335678888998764  7899999999999999999999988777   489999999887  678999999999999999


Q ss_pred             cccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCc--eeeeCCCCCeEEEEEecCCCCE
Q 007283          262 ISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSP--LQLSGHMKNVTALTVLNIDPKV  339 (609)
Q Consensus       262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~--~~~~~h~~~v~~~~~~~~~~~~  339 (609)
                      +..   +..........     ............++++..++.+.+|+........  ..+..|...+....+..   ..
T Consensus        82 ~~~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~  150 (293)
T d1p22a2          82 VNT---GEMLNTLIHHC-----EAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD---KY  150 (293)
T ss_dssp             SSS---CCEEEEECCCC-----SCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET---TE
T ss_pred             ccc---ccccccccccc-----cccccccccccceeecccccceeEeeccccccccccccccccccccccceecc---cc
Confidence            874   23333222111     1222333456688899999999999976543322  34567888887776643   57


Q ss_pred             EEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeecc
Q 007283          340 ILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALH  419 (609)
Q Consensus       340 ~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  419 (609)
                      +++++.|+.+++|+......          +.                   .+.                          
T Consensus       151 ~~~~s~d~~i~~~d~~~~~~----------~~-------------------~~~--------------------------  175 (293)
T d1p22a2         151 IVSASGDRTIKVWNTSTCEF----------VR-------------------TLN--------------------------  175 (293)
T ss_dssp             EEEEETTSEEEEEETTTCCE----------EE-------------------EEE--------------------------
T ss_pred             cccccCCCceeeecCCCCcE----------EE-------------------EEc--------------------------
Confidence            88999999999997643210          00                   000                          


Q ss_pred             CCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEE
Q 007283          420 YPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY  499 (609)
Q Consensus       420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~  499 (609)
                                               .....+..  +++++..+++|+.||.|++||++....  .....+|...+.+  +
T Consensus       176 -------------------------~~~~~v~~--~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~v~~--~  224 (293)
T d1p22a2         176 -------------------------GHKRGIAC--LQYRDRLVVSGSSDNTIRLWDIECGAC--LRVLEGHEELVRC--I  224 (293)
T ss_dssp             -------------------------CCSSCEEE--EEEETTEEEEEETTSCEEEEETTTCCE--EEEECCCSSCEEE--E
T ss_pred             -------------------------cccccccc--ccCCCCeEEEecCCCEEEEEeccccee--eeeecccceeeee--c
Confidence                                     00011222  344567899999999999999987654  3556778888775  5


Q ss_pred             CCCCCEEEEEeCCCeEEEEEccCC--------ceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEE
Q 007283          500 SPDVSMFASGDVNREAIVWDRVSR--------EVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYE  562 (609)
Q Consensus       500 s~~~~~l~s~s~d~~v~iwd~~~~--------~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~  562 (609)
                      ++++.++++|+.|+.+++||+...        ...+..+.+|...|++++|  |+++|+||+.||+|++||
T Consensus       225 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         225 RFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             ECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             cccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence            678899999999999999996432        1234557789999999999  467899999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.6e-27  Score=237.47  Aligned_cols=207  Identities=13%  Similarity=0.095  Sum_probs=137.8

Q ss_pred             cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce-----eeEEEeecccce------eEEEECCC-CCEEEEE
Q 007283           51 SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV-----LKKEFRVLSGRI------DDLQWSPD-GLRIVAC  118 (609)
Q Consensus        51 ~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~-----~~~~~~~~~~~v------~~~~~spd-g~~l~~~  118 (609)
                      ....+|+++|.++++++  ++|+|++.|++|||||..+.+.     .......+...+      ..+.+++. +..++++
T Consensus         8 ~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~   85 (393)
T d1sq9a_           8 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATT   85 (393)
T ss_dssp             EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             ecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEE
Confidence            45689999999999875  6999999999999999764321     111122222222      22233332 2334444


Q ss_pred             ECCCCcceEEEEEcCCCC---eeE--EE-----ecCCccEEEEEEeeCCC----eEEEEecCCCeEEEEeCCCCc-----
Q 007283          119 GDGKGKSLVRAFMWDSGT---NVG--EF-----DGHSRRVLSCAFKPSRP----FRIATCGEDFLVNFYEGPPFK-----  179 (609)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~---~~~--~~-----~~h~~~v~~~~~~p~~~----~~i~t~~~d~~i~~~~~~~~~-----  179 (609)
                      +.+.   .+++|......   ...  ..     ..+...+..+++.++..    ..+++++.|+.+.+|+.....     
T Consensus        86 ~~dg---~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          86 SFSG---DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             ETTS---CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             eCCC---cEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            4332   24455433221   111  11     13445677888877642    458899999999999853211     


Q ss_pred             -------------eeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccC---cCCCCccceEEEEECC
Q 007283          180 -------------FKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELS---PEDGHKGSVYAVSWSP  243 (609)
Q Consensus       180 -------------~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~---~~~~h~~~V~~l~~sp  243 (609)
                                   .......+...+++++|+|+| +|++|+.|++|+|||.++++.+..+.   ...+|...|++++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                         011123455678999999998 88999999999999999888765443   2347999999999999


Q ss_pred             CCCeEEEEeCCCc---EEEeecc
Q 007283          244 DGKQVLTASADKS---AKVWDIS  263 (609)
Q Consensus       244 d~~~l~s~s~d~~---i~iwd~~  263 (609)
                      ||++|++++.|++   |++||+.
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETT
T ss_pred             ccceeeeecCCCCcceeeecccc
Confidence            9999999999875   8999986

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-26  Score=219.54  Aligned_cols=276  Identities=20%  Similarity=0.306  Sum_probs=191.2

Q ss_pred             CCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEE
Q 007283          229 EDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIF  308 (609)
Q Consensus       229 ~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~  308 (609)
                      ...|...|+|++  +|+++|+||+.||+|++||+..   ++..                                     
T Consensus        11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~---~~~~-------------------------------------   48 (293)
T d1p22a2          11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNT---LECK-------------------------------------   48 (293)
T ss_dssp             CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSS---CCEE-------------------------------------
T ss_pred             cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCC---CcEE-------------------------------------
Confidence            346888899875  4799999999999999999862   2222                                     


Q ss_pred             eCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccce
Q 007283          309 SANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNK  388 (609)
Q Consensus       309 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  388 (609)
                               ..+.+|...|.++.+   +++++++|+.|+.|++|+...+......................++++..++.
T Consensus        49 ---------~~l~~H~~~V~~v~~---~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (293)
T d1p22a2          49 ---------RILTGHTGSVLCLQY---DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS  116 (293)
T ss_dssp             ---------EEECCCSSCEEEEEC---CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSC
T ss_pred             ---------EEEecCCCCEeeeec---ccceeecccccccccccccccccccccccccccccccccccccceeecccccc
Confidence                     234568888888775   34688889999999999776543322222222222223334445666666666


Q ss_pred             EEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCC
Q 007283          389 IWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQD  468 (609)
Q Consensus       389 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~d  468 (609)
                      +..|+........                                     .......+...+....  +....+++++.|
T Consensus       117 ~~~~~~~~~~~~~-------------------------------------~~~~~~~~~~~v~~~~--~~~~~~~~~s~d  157 (293)
T d1p22a2         117 IAVWDMASPTDIT-------------------------------------LRRVLVGHRAAVNVVD--FDDKYIVSASGD  157 (293)
T ss_dssp             EEEEECSSSSCCE-------------------------------------EEEEECCCSSCEEEEE--EETTEEEEEETT
T ss_pred             eeEeecccccccc-------------------------------------ccccccccccccccce--ecccccccccCC
Confidence            6666543322100                                     0000001122333333  445678899999


Q ss_pred             CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcE
Q 007283          469 GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSM  548 (609)
Q Consensus       469 g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~  548 (609)
                      +.|++|++.....  ...+.+|...|..+.++  +.++++++.|+++++||+.+... +.....|...+.+  +++++.+
T Consensus       158 ~~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~-~~~~~~~~~~v~~--~~~~~~~  230 (293)
T d1p22a2         158 RTIKVWNTSTCEF--VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGAC-LRVLEGHEELVRC--IRFDNKR  230 (293)
T ss_dssp             SEEEEEETTTCCE--EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCE-EEEECCCSSCEEE--EECCSSE
T ss_pred             CceeeecCCCCcE--EEEEcccccccccccCC--CCeEEEecCCCEEEEEeccccee-eeeecccceeeee--ccccceE
Confidence            9999999987655  34577888888887775  56899999999999999877654 3445677777765  5668899


Q ss_pred             EEEEeCCCeEEEEEcCCC-------CCcceeEeccccCCeEEEEEcCCCeEEEEeCCCcEEEEE
Q 007283          549 VATGSLDTCVIIYEIDKP-------ASSRMTIKGAHLGGVYGLAFTDEHSVVSSGEDACVRVWR  605 (609)
Q Consensus       549 l~s~s~D~~v~vw~~~~~-------~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~  605 (609)
                      |++|+.||+|++||+...       .......+.+|.+.|++++| ++++|+|+|.|++|++||
T Consensus       231 l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~-d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         231 IVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF-DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE-CSSCEEECCSSSEEEEEC
T ss_pred             EEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE-cCCEEEEEecCCEEEEeC
Confidence            999999999999997421       11224556789999999999 467899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=2.1e-26  Score=224.77  Aligned_cols=325  Identities=12%  Similarity=0.068  Sum_probs=218.4

Q ss_pred             EEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee---eeccCcccceEEEEEcCCC-CEEEEEeCCCcEEEE
Q 007283          140 EFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK---LSHRGHSNFVNCVRFSPDG-SKFISVSSDKKGIIY  215 (609)
Q Consensus       140 ~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~---~~~~~h~~~v~~l~~s~dg-~~l~s~~~d~~i~iw  215 (609)
                      ...+|.+.|++++|+|++.+ ||+|+.|++|++||....+..   ....+|..+|.+++|+|++ .+|++|+.|+.+++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~-L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSL-LLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTE-EEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCE-EEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccceeee
Confidence            35689999999999999985 999999999999997554322   2334799999999999875 489999999999999


Q ss_pred             eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283          216 DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF  295 (609)
Q Consensus       216 d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (609)
                      +...........  ..+........+.++...+++++.|+++++||++.............................+..
T Consensus        85 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
T d1yfqa_          85 DLIGSPSFQALT--NNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSR  162 (342)
T ss_dssp             CSSSSSSEEECB--SCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSE
T ss_pred             eccccccccccc--ccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCc
Confidence            988776655443  234444566667788899999999999999998643222222111111111112223334456778


Q ss_pred             EEEEEcCCcEEEEeCCCCCCCce--eeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEe
Q 007283          296 LVIVSLGGTISIFSANDLEKSPL--QLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCF  373 (609)
Q Consensus       296 ~~~~~~~g~i~~~~~~~~~~~~~--~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~  373 (609)
                      +++++.++.+++|++........  ....+...+......+.++..+++++.||.+.+|..+.........    ..   
T Consensus       163 ~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~----~~---  235 (342)
T d1yfqa_         163 LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS----KR---  235 (342)
T ss_dssp             EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT----TC---
T ss_pred             eeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeecc----cc---
Confidence            99999999999999865443222  2334445566666665566789999999999999764321100000    00   


Q ss_pred             eeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEE
Q 007283          374 AAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTAS  453 (609)
Q Consensus       374 ~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  453 (609)
                                      ..+....                                          .......+...++++
T Consensus       236 ----------------~~~~~~~------------------------------------------~~~~~~~~~~~v~~l  257 (342)
T d1yfqa_         236 ----------------FAFRCHR------------------------------------------LNLKDTNLAYPVNSI  257 (342)
T ss_dssp             ----------------EEEECCC------------------------------------------CCTTCCSSCCCEEEE
T ss_pred             ----------------ceeeeee------------------------------------------eccCCCcccccceeE
Confidence                            0000000                                          000001123468899


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCC
Q 007283          454 AIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYH  533 (609)
Q Consensus       454 ~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h  533 (609)
                      +++|++++||+|+.||.|++||++++...  ..+.. ...+..++|+|++.++++|+.|.++++|......     +..|
T Consensus       258 ~~sp~~~~lasg~~Dg~v~vWD~~~~~~l--~~~~~-~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~~~-----~~~~  329 (342)
T d1yfqa_         258 EFSPRHKFLYTAGSDGIISCWNLQTRKKI--KNFAK-FNEDSVVKIACSDNILCLATSDDTFKTNAAIDQT-----IELN  329 (342)
T ss_dssp             EECTTTCCEEEEETTSCEEEEETTTTEEE--EECCC-CSSSEEEEEEECSSEEEEEEECTHHHHCSSSCTT-----SCCC
T ss_pred             EecCCccEEEEECCCCEEEEEECCCCcEE--EEecC-CCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeCCC-----ccCC
Confidence            99999999999999999999999877542  33332 2356678889999999999999998888643321     3345


Q ss_pred             CCceEEE
Q 007283          534 TARINCL  540 (609)
Q Consensus       534 ~~~i~~l  540 (609)
                      ...|..+
T Consensus       330 ~~~i~~~  336 (342)
T d1yfqa_         330 ASSIYII  336 (342)
T ss_dssp             CCEEEEE
T ss_pred             CCeEEEE
Confidence            5556543

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.95  E-value=3.7e-27  Score=238.29  Aligned_cols=356  Identities=10%  Similarity=0.020  Sum_probs=231.6

Q ss_pred             EEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCcee-eEEEe---ecccceeEE
Q 007283           32 LYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVL-KKEFR---VLSGRIDDL  106 (609)
Q Consensus        32 ~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~-~~~~~---~~~~~v~~~  106 (609)
                      +... ++.+.|||+.+++.+..+..|. .+..++|||||++|++++.|++|++||+.+++.. ..+++   .+.+.+...
T Consensus        36 v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~  114 (432)
T d1qksa2          36 VTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSK  114 (432)
T ss_dssp             EEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEec
Confidence            4443 4799999999999988887764 5899999999999999999999999999876532 12222   344556677


Q ss_pred             EECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccC
Q 007283          107 QWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRG  186 (609)
Q Consensus       107 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~  186 (609)
                      +|||||++|++.+...  ..+++|+.++++.+..+..|...+....+.|++                             
T Consensus       115 ~~SpDG~~l~vs~~~~--~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~-----------------------------  163 (432)
T d1qksa2         115 MEGWEDKYAIAGAYWP--PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP-----------------------------  163 (432)
T ss_dssp             STTCTTTEEEEEEEET--TEEEEEETTTCCEEEEEECCEECTTTCCEESCC-----------------------------
T ss_pred             ccCCCCCEEEEEcCCC--CeEEEEeCccccceeeeccCCccccceeccCCC-----------------------------
Confidence            8999999986554322  246777777777777666555433333333332                             


Q ss_pred             cccceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeeccc
Q 007283          187 HSNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDISE  264 (609)
Q Consensus       187 h~~~v~~l~~s~dg~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~~  264 (609)
                         ....+.++|+|..+ ++...++.+.+||..+.+.......  .+......++|+|||+++++++. ++.+.++|...
T Consensus       164 ---~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i--~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~  238 (432)
T d1qksa2         164 ---RVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI--SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE  238 (432)
T ss_dssp             ---CEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE--ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTT
T ss_pred             ---ceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEE--cccCccccceECCCCCEEEEeccccceEEEeeccc
Confidence               24456789998865 5566788999999887664332211  24456889999999998877765 45778888752


Q ss_pred             CCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEE-E
Q 007283          265 DNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILS-S  343 (609)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t-~  343 (609)
                         .+..........                                         ..|........... .+....+ .
T Consensus       239 ---~~~~~~~~~g~~-----------------------------------------~~~~~~~~~~~~~~-~g~~~~~~~  273 (432)
T d1qksa2         239 ---GKLVAIEDTGGQ-----------------------------------------TPHPGRGANFVHPT-FGPVWATSH  273 (432)
T ss_dssp             ---TEEEEEEECSSS-----------------------------------------SBCCTTCEEEEETT-TEEEEEEEB
T ss_pred             ---ceEEEEeccCcc-----------------------------------------ccccCcccceecCC-CCceecccc
Confidence               333322211100                                         00111111111111 1111222 2


Q ss_pred             ecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcE
Q 007283          344 SYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPEL  423 (609)
Q Consensus       344 s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  423 (609)
                      ..|+.+.+|......                                          .                      
T Consensus       274 lg~~~v~~~~~~~~~------------------------------------------~----------------------  289 (432)
T d1qksa2         274 MGDDSVALIGTDPEG------------------------------------------H----------------------  289 (432)
T ss_dssp             SSSSEEEEEECCTTT------------------------------------------C----------------------
T ss_pred             cCCceEEeccccccc------------------------------------------c----------------------
Confidence            235556555321100                                          0                      


Q ss_pred             EEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCC
Q 007283          424 VLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDV  503 (609)
Q Consensus       424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~  503 (609)
                                          ..+...+...+++|++..+++++.+.+.++|.....        ..|.....++++ ||+
T Consensus       290 --------------------~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~--------~~~~~~~~sv~v-pDg  340 (432)
T d1qksa2         290 --------------------PDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATL--------NPEAEISGSVAV-FDI  340 (432)
T ss_dssp             --------------------TTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTT--------CSSHHHHTCEEE-EEG
T ss_pred             --------------------cccccEEEEEEEcCCCCeEEEEecCCccceeecccC--------CCCCCeeeEEEE-Eec
Confidence                                000123455678899999999999999999976432        234444445555 999


Q ss_pred             CEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEe-----CCCeEEEEEcCCC
Q 007283          504 SMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGS-----LDTCVIIYEIDKP  566 (609)
Q Consensus       504 ~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s-----~D~~v~vw~~~~~  566 (609)
                      +.+++++.|+++++||+.+..    .+..|...|.+++|||||++++.+.     .|+.|+|||-.+.
T Consensus       341 ~~la~~s~d~~~k~w~~~~~~----~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~  404 (432)
T d1qksa2         341 KAMTGDGSDPEFKTLPIAEWA----GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  404 (432)
T ss_dssp             GGCCCSSSCCCEEEECHHHHH----TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             hhhcccccCCceEeccccccc----ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCc
Confidence            999999999999999975432    2345778899999999999886553     5789999997764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.95  E-value=3.9e-27  Score=232.74  Aligned_cols=192  Identities=10%  Similarity=0.046  Sum_probs=156.4

Q ss_pred             EeecC-CCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC--CcEEEEcCCCCceeeEEEee
Q 007283           22 ISGHP-KSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS--GTVRIWGAHNDHVLKKEFRV   98 (609)
Q Consensus        22 ~~~~~-~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d--~~i~vWd~~~~~~~~~~~~~   98 (609)
                      =.|+| ||+.+++...+.+++|++.++...+ + +|.+.|++++|||||++|++++.+  ..|++||..+++.  ..+..
T Consensus         8 ~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~-~-~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~--~~~~~   83 (360)
T d1k32a3           8 EDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-V-PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKA--EKFEE   83 (360)
T ss_dssp             EEEEECGGGCEEEEETTEEEEECTTSSBEEE-C-SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCE--EECCC
T ss_pred             ccccCCCCCEEEEEECCeEEEEECCCCcEEE-c-cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcE--EEeeC
Confidence            35899 9999999988899999998877655 3 699999999999999999876654  3799999988653  34667


Q ss_pred             cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEE---------ecCCCe
Q 007283           99 LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIAT---------CGEDFL  169 (609)
Q Consensus        99 ~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t---------~~~d~~  169 (609)
                      +...|..++|+|||++|++++.+.   .+++|+.+.+.....+..|...+.+++|+|++..++.+         +..++.
T Consensus        84 ~~~~v~~~~~spdg~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~  160 (360)
T d1k32a3          84 NLGNVFAMGVDRNGKFAVVANDRF---EIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA  160 (360)
T ss_dssp             CCCSEEEEEECTTSSEEEEEETTS---EEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred             CCceEEeeeecccccccceecccc---ccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccc
Confidence            888999999999999999988654   46677777788888888999999999999999864333         234457


Q ss_pred             EEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 007283          170 VNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD  221 (609)
Q Consensus       170 i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~  221 (609)
                      +.+|+....+.... ..|...+..+.|+|||+.|++++.++.+.+|+.....
T Consensus       161 ~~v~d~~~~~~~~~-~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~  211 (360)
T d1k32a3         161 IHVYDMEGRKIFAA-TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN  211 (360)
T ss_dssp             EEEEETTTTEEEEC-SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred             eeeeccccCceeee-cccccccccccccCCCCEEEEEeCCCceEcccccccc
Confidence            88999887665433 3466678899999999999999999999999876543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.93  E-value=2.4e-23  Score=210.54  Aligned_cols=332  Identities=10%  Similarity=0.006  Sum_probs=206.5

Q ss_pred             eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccc--ccCcCCCCccce
Q 007283          159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIG--ELSPEDGHKGSV  236 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~h~~~V  236 (609)
                      ..+++.+.|+.|++||..+++....+..|. .+..++|||||++|++++.|+++++||..+++...  .+....+|.+.+
T Consensus        33 ~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~  111 (426)
T d1hzua2          33 LFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE  111 (426)
T ss_dssp             EEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceE
Confidence            346788899999999999999988887764 58999999999999999999999999999887533  233334677888


Q ss_pred             EEEEECCCCCeEEEE-eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCC
Q 007283          237 YAVSWSPDGKQVLTA-SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEK  315 (609)
Q Consensus       237 ~~l~~spd~~~l~s~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~  315 (609)
                      .+++|+|||++++++ ..++.+++||...   +........                                       
T Consensus       112 ~s~~~spDG~~l~v~~~~~~~v~i~d~~~---~~~~~~~~~---------------------------------------  149 (426)
T d1hzua2         112 SSKFKGYEDRYTIAGAYWPPQFAIMDGET---LEPKQIVST---------------------------------------  149 (426)
T ss_dssp             ECCSTTCTTTEEEEEEEESSEEEEEETTT---CCEEEEEEC---------------------------------------
T ss_pred             EeeeecCCCCEEEEeecCCCeEEEEcCCc---cceeEEeec---------------------------------------
Confidence            899999999987554 5789999999863   333322211                                       


Q ss_pred             CceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEecc
Q 007283          316 SPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQ  395 (609)
Q Consensus       316 ~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~  395 (609)
                             |...+....+........+..+.|+...++....                             .+.+..+...
T Consensus       150 -------~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~-----------------------------~~~i~~~~~~  193 (426)
T d1hzua2         150 -------RGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE-----------------------------TGKVLLVNYK  193 (426)
T ss_dssp             -------CEECSSSCCEESCCCEEEEEECSSSSEEEEEETT-----------------------------TTEEEEEECS
T ss_pred             -------cCCCccceeecCCCceeEEEECCCCCEEEEecCC-----------------------------CCeEEEEEec
Confidence                   1111111111111112334444555544442110                             0011111100


Q ss_pred             CCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeC-CCcEEEE
Q 007283          396 GDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQ-DGKLRVY  474 (609)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~-dg~i~iw  474 (609)
                      ...                       .                .....+.....+..++++|++++++++.. +..+.++
T Consensus       194 ~~~-----------------------~----------------~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~  234 (426)
T d1hzua2         194 DID-----------------------N----------------LTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVI  234 (426)
T ss_dssp             SSS-----------------------S----------------CEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEE
T ss_pred             ccc-----------------------c----------------eeeEEeccCCccEeeeECCCCcEEEeeeecccceeee
Confidence            000                       0                00011122234677899999998888765 4568899


Q ss_pred             EecCCeeeeeEEEecCCCceEEEEECCCCC---EEEEEeCCCeEEEEEccCCc------eEEeeecCCCCceEEEEECCC
Q 007283          475 SIRGDTLTEEAVLEKHRGAVSVIRYSPDVS---MFASGDVNREAIVWDRVSRE------VKLKNMLYHTARINCLAWSPN  545 (609)
Q Consensus       475 ~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~---~l~s~s~d~~v~iwd~~~~~------~~~~~~~~h~~~i~~l~~s~d  545 (609)
                      +...+..........+......+.+.+++.   ..++.+.|+.+.+|+.....      .....+.+|...+..++||||
T Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPd  314 (426)
T d1hzua2         235 DSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPK  314 (426)
T ss_dssp             ETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTT
T ss_pred             ecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCC
Confidence            988776543333222222222333332222   22233456667777643321      123457789999999999999


Q ss_pred             CcEEE-------EEeCCCeEEEEEcCCCCCccee-------EeccccCCeEEEEEc-CCCeE-EEE----eCCCcEEEEE
Q 007283          546 NSMVA-------TGSLDTCVIIYEIDKPASSRMT-------IKGAHLGGVYGLAFT-DEHSV-VSS----GEDACVRVWR  605 (609)
Q Consensus       546 ~~~l~-------s~s~D~~v~vw~~~~~~~~~~~-------~~~~h~~~v~~~~~s-~~~~l-~s~----s~D~~i~~W~  605 (609)
                      +++|+       +++.|++|+|||+.+.......       -...|.++|+.++|| |++.+ +|+    +.|+.|++||
T Consensus       315 g~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         315 SSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             CSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             CceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence            99999       4667899999999764321111       123467789999999 77655 554    3688999999


Q ss_pred             ccC
Q 007283          606 LTP  608 (609)
Q Consensus       606 ~~~  608 (609)
                      ..+
T Consensus       395 ~~T  397 (426)
T d1hzua2         395 DKT  397 (426)
T ss_dssp             TTT
T ss_pred             CCC
Confidence            753

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=1.5e-23  Score=212.12  Aligned_cols=344  Identities=12%  Similarity=0.081  Sum_probs=198.7

Q ss_pred             ECCCCC--EEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe
Q 007283           65 FSPNGE--WIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD  142 (609)
Q Consensus        65 ~sp~g~--~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (609)
                      +++|.+  ++++.+.||+|+|||..+++++. .+..+ ..+..++|||||++                            
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~-~l~~g-~~~~~vafSPDGk~----------------------------   75 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVK-VIDTG-YAVHISRMSASGRY----------------------------   75 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEE-EEECC-SSEEEEEECTTSCE----------------------------
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEE-EEeCC-CCeeEEEECCCCCE----------------------------
Confidence            445543  55788899999999999877543 34333 23455555555544                            


Q ss_pred             cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee-----eccCcccceEEEEEcCCCCEEEE-EeCCCcEEEEe
Q 007283          143 GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL-----SHRGHSNFVNCVRFSPDGSKFIS-VSSDKKGIIYD  216 (609)
Q Consensus       143 ~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~-----~~~~h~~~v~~l~~s~dg~~l~s-~~~d~~i~iwd  216 (609)
                                        +++++.|+.+++||..+.+...     ...+|...+.+++|+|||+++++ +..++.+.+||
T Consensus        76 ------------------l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d  137 (426)
T d1hzua2          76 ------------------LLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMD  137 (426)
T ss_dssp             ------------------EEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEE
T ss_pred             ------------------EEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEc
Confidence                              4445556666777766554322     23457777788899999998654 45789999999


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCe
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDF  295 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (609)
                      ..++..+..+.   +|...+....+.+++. ..+..+.|+...++.....  +..                         
T Consensus       138 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~--~~i-------------------------  187 (426)
T d1hzua2         138 GETLEPKQIVS---TRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET--GKV-------------------------  187 (426)
T ss_dssp             TTTCCEEEEEE---CCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT--TEE-------------------------
T ss_pred             CCccceeEEee---ccCCCccceeecCCCceeEEEECCCCCEEEEecCCC--CeE-------------------------
Confidence            99988765542   4555566666666665 3445556666555543311  110                         


Q ss_pred             EEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeee
Q 007283          296 LVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAA  375 (609)
Q Consensus       296 ~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~  375 (609)
                                .++.............++...+..+.+.+....++++...+..+.+++..........            
T Consensus       188 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~------------  245 (426)
T d1hzua2         188 ----------LLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALV------------  245 (426)
T ss_dssp             ----------EEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEE------------
T ss_pred             ----------EEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEe------------
Confidence                      1111111111111223455566677776554445555556666777755432110000            


Q ss_pred             eCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEE
Q 007283          376 IEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAI  455 (609)
Q Consensus       376 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  455 (609)
                                       .....          ........+                          ......++.....
T Consensus       246 -----------------~~~~~----------~~~~~~~~~--------------------------~~~~~~~~~~~~~  272 (426)
T d1hzua2         246 -----------------DVGKT----------PHPGRGANF--------------------------VHPKYGPVWSTSH  272 (426)
T ss_dssp             -----------------ECSSC----------CCCSCCEEE--------------------------EETTTEEEEEEEC
T ss_pred             -----------------ccCCc----------ccccceeee--------------------------ecCCCCceEEecc
Confidence                             00000          000000000                          0000112233333


Q ss_pred             cCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEE-------EeCCCeEEEEEccCCceEEe
Q 007283          456 APDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFAS-------GDVNREAIVWDRVSREVKLK  528 (609)
Q Consensus       456 sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s-------~s~d~~v~iwd~~~~~~~~~  528 (609)
                      ++++...+.+..+..+.+|+.   .  ....+.+|...+..++|+||++++++       ++.|+++++||+.+.+...+
T Consensus       273 ~~d~~v~~~~~~~~~~~~~~~---~--~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~  347 (426)
T d1hzua2         273 LGDGSISLIGTDPKNHPQYAW---K--KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQ  347 (426)
T ss_dssp             TTTCEEEEEECCTTTCTTTBT---S--EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCE
T ss_pred             CCCceEEEeeccccccccccc---e--EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeE
Confidence            445554455544444333321   2  24567899999999999999999994       56789999999887654221


Q ss_pred             e--------ecCCCCceEEEEECCCCcEEEE-----EeCCCeEEEEEcCCC
Q 007283          529 N--------MLYHTARINCLAWSPNNSMVAT-----GSLDTCVIIYEIDKP  566 (609)
Q Consensus       529 ~--------~~~h~~~i~~l~~s~d~~~l~s-----~s~D~~v~vw~~~~~  566 (609)
                      .        +..|...|.+++|||||++++.     ++.|++|+|||..+.
T Consensus       348 ~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~  398 (426)
T d1hzua2         348 VLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTL  398 (426)
T ss_dssp             EECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTT
T ss_pred             EeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCC
Confidence            1        2246677999999999997743     246899999998764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.91  E-value=6e-23  Score=207.13  Aligned_cols=351  Identities=11%  Similarity=-0.040  Sum_probs=225.1

Q ss_pred             eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccc--cccCcCCCCccce
Q 007283          159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKI--GELSPEDGHKGSV  236 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~--~~~~~~~~h~~~V  236 (609)
                      .++++.+.|+.+.+||..+++....+..|. .+..++|||||+++++++.|+++.+||..+++..  ..+....+|.+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~  111 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIE  111 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEE
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeE
Confidence            346888999999999999999998887664 5899999999999999999999999999887632  2333234577788


Q ss_pred             EEEEECCCCCeE-EEEeCCCcEEEeecccCCCCceEEEeccCCC------CCccceEEEEEEc--CCe-EEEEEcCCcEE
Q 007283          237 YAVSWSPDGKQV-LTASADKSAKVWDISEDNHGKLKKTLTPSGS------GGVDDMLVGCLWQ--NDF-LVIVSLGGTIS  306 (609)
Q Consensus       237 ~~l~~spd~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~--~~~-~~~~~~~g~i~  306 (609)
                      .+..|+|||++| ++++.++++++||...   ++....+.....      .........+..+  +.. +++...++.+.
T Consensus       112 ~s~~~SpDG~~l~vs~~~~~~v~i~d~~t---~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~  188 (432)
T d1qksa2         112 TSKMEGWEDKYAIAGAYWPPQYVIMDGET---LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  188 (432)
T ss_dssp             ECCSTTCTTTEEEEEEEETTEEEEEETTT---CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             EecccCCCCCEEEEEcCCCCeEEEEeCcc---ccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEE
Confidence            888999999976 6788899999999873   444444322110      0011111222222  333 44555678888


Q ss_pred             EEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEecc
Q 007283          307 IFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFD  386 (609)
Q Consensus       307 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  386 (609)
                      +++..+........-.+...+..+++++....+++++..++.+.+++........                         
T Consensus       189 ~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~-------------------------  243 (432)
T d1qksa2         189 LVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVA-------------------------  243 (432)
T ss_dssp             EEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEE-------------------------
T ss_pred             EEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEE-------------------------
Confidence            8886554322211223445567777765433344444456666666553321000                         


Q ss_pred             ceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEE-
Q 007283          387 NKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIG-  465 (609)
Q Consensus       387 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~g-  465 (609)
                          ........                                              .+............+...+.. 
T Consensus       244 ----~~~~g~~~----------------------------------------------~~~~~~~~~~~~~~g~~~~~~~  273 (432)
T d1qksa2         244 ----IEDTGGQT----------------------------------------------PHPGRGANFVHPTFGPVWATSH  273 (432)
T ss_dssp             ----EEECSSSS----------------------------------------------BCCTTCEEEEETTTEEEEEEEB
T ss_pred             ----EeccCccc----------------------------------------------cccCcccceecCCCCceecccc
Confidence                00000000                                              000001111122222333332 


Q ss_pred             eCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCC
Q 007283          466 SQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPN  545 (609)
Q Consensus       466 s~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d  545 (609)
                      ..|+.|.+|......      ...|...+....++|++..+++++.+.+.++|+...       +..|......+++ ||
T Consensus       274 lg~~~v~~~~~~~~~------~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~-------~~~~~~~~~sv~v-pD  339 (432)
T d1qksa2         274 MGDDSVALIGTDPEG------HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDAT-------LNPEAEISGSVAV-FD  339 (432)
T ss_dssp             SSSSEEEEEECCTTT------CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECT-------TCSSHHHHTCEEE-EE
T ss_pred             cCCceEEeccccccc------ccccccEEEEEEEcCCCCeEEEEecCCccceeeccc-------CCCCCCeeeEEEE-Ee
Confidence            237788999765432      345777899999999999999999999999997543       2234444455666 99


Q ss_pred             CcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc-CCCeEE-EEe----CCCcEEEEEcc
Q 007283          546 NSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT-DEHSVV-SSG----EDACVRVWRLT  607 (609)
Q Consensus       546 ~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s-~~~~l~-s~s----~D~~i~~W~~~  607 (609)
                      ++.|++++.|+++++|++....    . +..|.++|..++|| |++.++ |..    .|+.|++||..
T Consensus       340 g~~la~~s~d~~~k~w~~~~~~----~-l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~  402 (432)
T d1qksa2         340 IKAMTGDGSDPEFKTLPIAEWA----G-ITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDK  402 (432)
T ss_dssp             GGGCCCSSSCCCEEEECHHHHH----T-CCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             chhhcccccCCceEeccccccc----c-cCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECC
Confidence            9999999999999999975321    1 13477789999999 777664 432    46889999864

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.87  E-value=2.7e-20  Score=181.74  Aligned_cols=102  Identities=9%  Similarity=0.017  Sum_probs=78.3

Q ss_pred             EEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEE
Q 007283          461 EAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCL  540 (609)
Q Consensus       461 ~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l  540 (609)
                      .++++..+..+.+|+...+... ......|...+..+.+++++.+++.... +.+++||..+.+....  ..+...+.++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~--~~~~~~~~~v  297 (346)
T d1jmxb_         222 DPATADLLYGYLSVDLKTGKTH-TQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKA--ANLDHTYYCV  297 (346)
T ss_dssp             --CCCEEEEEEEEEETTTCCEE-EEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEE--EECSSCCCEE
T ss_pred             eEeeccCCceEEEEECCCCceE-EEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEE--EcCCCCEEEE
Confidence            3444555667888988766543 2445678888999999999998887764 5799999887765332  2345579999


Q ss_pred             EECCCCcEEEEEeCCCeEEEEEcCCC
Q 007283          541 AWSPNNSMVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       541 ~~s~d~~~l~s~s~D~~v~vw~~~~~  566 (609)
                      +|||||++|++++.|+.|+|||..+.
T Consensus       298 a~s~DG~~l~v~~~d~~v~v~D~~t~  323 (346)
T d1jmxb_         298 AFDKKGDKLYLGGTFNDLAVFNPDTL  323 (346)
T ss_dssp             EECSSSSCEEEESBSSEEEEEETTTT
T ss_pred             EEcCCCCEEEEEeCCCcEEEEECccC
Confidence            99999999999999999999999764

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=8.8e-18  Score=160.26  Aligned_cols=268  Identities=18%  Similarity=0.164  Sum_probs=184.5

Q ss_pred             eEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCccccccCcCCCCccceE
Q 007283          159 FRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKF-ISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVY  237 (609)
Q Consensus       159 ~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~  237 (609)
                      +.+++++.|+.|.+||..+++....+... .....++|+|||++| ++++.++.|.+||..+++.+..+.   .+ ..+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~---~~-~~~~   77 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP---AG-SSPQ   77 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE---CS-SSEE
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee---cc-cccc
Confidence            45778889999999999999887776533 346789999999977 566678999999999998877663   23 3478


Q ss_pred             EEEECCCCCeEE-EEeCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCC
Q 007283          238 AVSWSPDGKQVL-TASADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKS  316 (609)
Q Consensus       238 ~l~~spd~~~l~-s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~  316 (609)
                      .+.|++++.+++ ++..++.+++|+...   ++....+.                                         
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----------------------------------------  113 (301)
T d1l0qa2          78 GVAVSPDGKQVYVTNMASSTLSVIDTTS---NTVAGTVK-----------------------------------------  113 (301)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEETTT---TEEEEEEE-----------------------------------------
T ss_pred             ccccccccccccccccccceeeeccccc---ceeeeecc-----------------------------------------
Confidence            999999998655 455677899998752   22222111                                         


Q ss_pred             ceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccC
Q 007283          317 PLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQG  396 (609)
Q Consensus       317 ~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  396 (609)
                            +......+.+.+....+++++..++.+.+|+......                                     
T Consensus       114 ------~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------  150 (301)
T d1l0qa2         114 ------TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAV-------------------------------------  150 (301)
T ss_dssp             ------CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-------------------------------------
T ss_pred             ------ccccceEEEeecCCCeeeeeeccccceeeeeccccce-------------------------------------
Confidence                  1123344555544444566777788888885432110                                     


Q ss_pred             CccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCC-CcEEEEE
Q 007283          397 DQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQD-GKLRVYS  475 (609)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~d-g~i~iw~  475 (609)
                                                                  ...+.....+..++++|++..+++++.+ +.+.+|+
T Consensus       151 --------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (301)
T d1l0qa2         151 --------------------------------------------INTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVID  186 (301)
T ss_dssp             --------------------------------------------EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             --------------------------------------------eeecccCCCceEEEeeccccceeeeccccccccccc
Confidence                                                        0000111235667889999988888776 4566676


Q ss_pred             ecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeC---CCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEE-EE
Q 007283          476 IRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDV---NREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMV-AT  551 (609)
Q Consensus       476 ~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~---d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l-~s  551 (609)
                      .......  .. ..+...+..++|++++..++.++.   ++++++||..+.+... .+ .+...+++++|||||++| ++
T Consensus       187 ~~~~~~~--~~-~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~-~~-~~~~~~~~va~spdg~~l~va  261 (301)
T d1l0qa2         187 TVTNSVI--DT-VKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITA-RI-PVGPDPAGIAVTPDGKKVYVA  261 (301)
T ss_dssp             TTTTEEE--EE-EECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEE-EE-ECCSSEEEEEECTTSSEEEEE
T ss_pred             ccceeee--ec-ccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEE-EE-cCCCCEEEEEEeCCCCEEEEE
Confidence            6554432  22 234456788999999998876543   4689999988776532 22 345678999999999976 67


Q ss_pred             EeCCCeEEEEEcCCCC
Q 007283          552 GSLDTCVIIYEIDKPA  567 (609)
Q Consensus       552 ~s~D~~v~vw~~~~~~  567 (609)
                      ++.|++|++||+.+.+
T Consensus       262 ~~~~~~i~v~D~~t~~  277 (301)
T d1l0qa2         262 LSFCNTVSVIDTATNT  277 (301)
T ss_dssp             ETTTTEEEEEETTTTE
T ss_pred             ECCCCeEEEEECCCCe
Confidence            8889999999997643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.85  E-value=3.8e-18  Score=162.81  Aligned_cols=262  Identities=15%  Similarity=0.145  Sum_probs=191.5

Q ss_pred             CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCC
Q 007283           35 NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL  113 (609)
Q Consensus        35 ~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~  113 (609)
                      .++.|.+||+++++.+..+.. .+....++|+|||++| ++++.+++|++||+.+++.+ ..+..+. .+..++|++|+.
T Consensus        10 ~~~~v~v~D~~t~~~~~~i~~-g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~-~~~~~~~-~~~~~~~~~~~~   86 (301)
T d1l0qa2          10 ESDNISVIDVTSNKVTATIPV-GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVI-ATVPAGS-SPQGVAVSPDGK   86 (301)
T ss_dssp             TTTEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEE-EEEECSS-SEEEEEECTTSS
T ss_pred             CCCEEEEEECCCCeEEEEEEC-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcee-eeeeccc-cccccccccccc
Confidence            347899999999988776653 3457899999999988 47778999999999987643 3444443 468899999999


Q ss_pred             EEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEE
Q 007283          114 RIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNC  193 (609)
Q Consensus       114 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~  193 (609)
                      ++++.+.+..  .+.+++...+.....+..+ .....+.|+|++...++++..+..+.+|+..+.+....+..+ ..+.+
T Consensus        87 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  162 (301)
T d1l0qa2          87 QVYVTNMASS--TLSVIDTTSNTVAGTVKTG-KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKG  162 (301)
T ss_dssp             EEEEEETTTT--EEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEE
T ss_pred             cccccccccc--eeeecccccceeeeecccc-ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccC-CCceE
Confidence            8888775433  4667777777666666554 456889999999988888899999999999888777665544 34788


Q ss_pred             EEEcCCCCEEEEEeCC-CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC---CCcEEEeecccCCCCc
Q 007283          194 VRFSPDGSKFISVSSD-KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA---DKSAKVWDISEDNHGK  269 (609)
Q Consensus       194 l~~s~dg~~l~s~~~d-~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~---d~~i~iwd~~~~~~~~  269 (609)
                      +.++|++..+++++.+ +.+.+|+....+......    +......++|++++..++.++.   +++|++||+..   ++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t---~~  235 (301)
T d1l0qa2         163 IAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK----VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT---NK  235 (301)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE----CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTT---TE
T ss_pred             EEeeccccceeeecccccccccccccceeeeeccc----ccCCcceeeccccccccccccccceeeeeeeeecCC---Ce
Confidence            9999999988877765 566677766655444332    3345788999999998776543   46799999862   32


Q ss_pred             eEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcE
Q 007283          270 LKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLI  349 (609)
Q Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i  349 (609)
                      ....+.                                               +...+..+++++....++++++.|++|
T Consensus       236 ~~~~~~-----------------------------------------------~~~~~~~va~spdg~~l~va~~~~~~i  268 (301)
T d1l0qa2         236 ITARIP-----------------------------------------------VGPDPAGIAVTPDGKKVYVALSFCNTV  268 (301)
T ss_dssp             EEEEEE-----------------------------------------------CCSSEEEEEECTTSSEEEEEETTTTEE
T ss_pred             EEEEEc-----------------------------------------------CCCCEEEEEEeCCCCEEEEEECCCCeE
Confidence            222211                                               113456777765443456788899999


Q ss_pred             EEEecCcc
Q 007283          350 VKWIQGIG  357 (609)
Q Consensus       350 ~~W~~~~~  357 (609)
                      ++|+..++
T Consensus       269 ~v~D~~t~  276 (301)
T d1l0qa2         269 SVIDTATN  276 (301)
T ss_dssp             EEEETTTT
T ss_pred             EEEECCCC
Confidence            99987654

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=2.3e-19  Score=174.38  Aligned_cols=94  Identities=9%  Similarity=-0.037  Sum_probs=73.0

Q ss_pred             CCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCc
Q 007283          468 DGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS  547 (609)
Q Consensus       468 dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~  547 (609)
                      ++.+.+|+...+... ......+...+..+.++|++.+++++  ++.+++||+.+.+....  ..+...+.+++|||||+
T Consensus       218 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~s~dG~  292 (337)
T d1pbyb_         218 RTGLLTMDLETGEMA-MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKR--VPLPHSYYSVNVSTDGS  292 (337)
T ss_dssp             EEEEEEEETTTCCEE-EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEE--EECSSCCCEEEECTTSC
T ss_pred             CccEEEEEcCCCcEE-EEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEE--EcCCCCEEEEEECCCCC
Confidence            445666666655432 23345677788899999999999876  47999999988765432  24667899999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCC
Q 007283          548 MVATGSLDTCVIIYEIDKP  566 (609)
Q Consensus       548 ~l~s~s~D~~v~vw~~~~~  566 (609)
                      +|++++.|++|.|||..+.
T Consensus       293 ~l~v~~~~~~i~v~D~~t~  311 (337)
T d1pbyb_         293 TVWLGGALGDLAAYDAETL  311 (337)
T ss_dssp             EEEEESBSSEEEEEETTTC
T ss_pred             EEEEEeCCCcEEEEECCCC
Confidence            9999999999999999764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=8.2e-17  Score=158.84  Aligned_cols=338  Identities=10%  Similarity=-0.048  Sum_probs=194.8

Q ss_pred             cccCCCCcEEEEECCCCCEEEEE-----eCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceE
Q 007283           53 YGEHAYPATVARFSPNGEWIASA-----DVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLV  127 (609)
Q Consensus        53 ~~~h~~~v~~~~~sp~g~~las~-----~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~  127 (609)
                      ...|.+++..++++|||+.++..     +.+++|.+||..+++.+. ++..+.  ...++|||||++|++.+....    
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~-~~~~~~--~~~~a~SpDG~~l~va~~~~~----   88 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG-HVNGGF--LPNPVAAHSGSEFALASTSFS----   88 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE-EEeCCC--CccEEEcCCCCEEEEEeecCC----
Confidence            45678899999999999998753     234568889988887554 344433  337999999999988653221    


Q ss_pred             EEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccc-------eEEEEEcCCC
Q 007283          128 RAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNF-------VNCVRFSPDG  200 (609)
Q Consensus       128 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~-------v~~l~~s~dg  200 (609)
                                                      ....+..++.+.+||..+++.......+...       ...+.|++++
T Consensus        89 --------------------------------~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  136 (373)
T d2madh_          89 --------------------------------RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN  136 (373)
T ss_pred             --------------------------------cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC
Confidence                                            2334455566777777666655544433322       2456888998


Q ss_pred             CEEEEEe--CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe-EEEEeCCCcEEEeecccCCCCceEEEeccC
Q 007283          201 SKFISVS--SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ-VLTASADKSAKVWDISEDNHGKLKKTLTPS  277 (609)
Q Consensus       201 ~~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~-l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~  277 (609)
                      +.++...  .+..+.+|+....+...       +.....++.|+|+++. +++.+.|+++.+|+...   ++........
T Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~---~~~~~~~~~~  206 (373)
T d2madh_         137 ADLLFFQFAAGPAVGLVVQGGSSDDQ-------LLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAG---GAAGAGLVGA  206 (373)
T ss_pred             CcEEEEEEcCCCceEEeeccCCeEEE-------EeccceeEEEecCCCcEEEEEcCCCeEEEEEcCC---ceeeEEEeee
Confidence            8665554  45678888877655432       3345678899999875 46788999999999863   2222222111


Q ss_pred             C-CCCccceEEEEEEcC-CeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecC
Q 007283          278 G-SGGVDDMLVGCLWQN-DFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQG  355 (609)
Q Consensus       278 ~-~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~  355 (609)
                      . ............+.+ ..++..+.++.+.+++.....            +..+.                   .|...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------------~~~~~-------------------~~~~~  255 (373)
T d2madh_         207 MLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAG------------ATNKA-------------------PIDAL  255 (373)
T ss_pred             ccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCe------------EEEEE-------------------eeccc
Confidence            0 000000111111222 233444445555555432110            00000                   00000


Q ss_pred             ccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEe
Q 007283          356 IGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLL  435 (609)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  435 (609)
                      ..           .......                                         ..........+.+.     
T Consensus       256 ~~-----------~~~~~~~-----------------------------------------~~~~~~~~~~~~d~-----  278 (373)
T d2madh_         256 SG-----------GRKADTW-----------------------------------------RPGGWQQVAYLKSS-----  278 (373)
T ss_pred             cC-----------cEEeeee-----------------------------------------ccCcceeeEEecCC-----
Confidence            00           0000000                                         00000000000000     


Q ss_pred             eCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCC--EEEEEeCCC
Q 007283          436 RGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVS--MFASGDVNR  513 (609)
Q Consensus       436 ~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~--~l~s~s~d~  513 (609)
                                    -......+++..++....++.+.+||..++...  . ...+...+..++|||||+  ++++++.|+
T Consensus       279 --------------~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~--~-~~~~~~~~~~~a~spDG~~~l~vt~~~d~  341 (373)
T d2madh_         279 --------------DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS--S-QISLGHDVDAISVAQDGGPDLYALSAGTE  341 (373)
T ss_pred             --------------CeEEEecCCCceEEeecCCCeEEEEECCCCcEE--E-EecCCCCeeEEEECCCCCEEEEEEeCCCC
Confidence                          011123445566777888899999999877643  2 234667899999999998  457899999


Q ss_pred             eEEEEEccCCceEEeeecCCCCceEEEEECCC
Q 007283          514 EAIVWDRVSREVKLKNMLYHTARINCLAWSPN  545 (609)
Q Consensus       514 ~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d  545 (609)
                      +|++||+.+++. ++.+..+....+.+++.++
T Consensus       342 ~v~v~D~~tg~~-~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         342 VLHIYDAGAGDQ-DQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             eEEEEECCCCCE-EEEECCCCCCCcEEEEecC
Confidence            999999988765 4556667777777777543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.80  E-value=2.2e-18  Score=167.92  Aligned_cols=313  Identities=11%  Similarity=0.012  Sum_probs=191.7

Q ss_pred             EeecCCCCeEEEeC-CCEEEEEeCCCCccccccc-cCCCCcEEEEECCCCCEE-EEEeCCCcEEEEcCCCCceeeEEEee
Q 007283           22 ISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYG-EHAYPATVARFSPNGEWI-ASADVSGTVRIWGAHNDHVLKKEFRV   98 (609)
Q Consensus        22 ~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l-as~~~d~~i~vWd~~~~~~~~~~~~~   98 (609)
                      +++++++++++..+ ++.|.+||+.+++.+..+. .|......++|+|||+++ +++..+++|++||+.+++.... +..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~-~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH-ANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE-EES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee-ecc
Confidence            46788999988765 5899999999998877665 456678899999999987 5667899999999998765432 222


Q ss_pred             c------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEE
Q 007283           99 L------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNF  172 (609)
Q Consensus        99 ~------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~  172 (609)
                      .      ...+..++|+|||+++++.+.....      .                            .......+..+.+
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~------~----------------------------~~~~~~~~~~i~~  126 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQR------L----------------------------NDHYVVKPPRLEV  126 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEE------C----------------------------SSCEEECCCEEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcc------e----------------------------eeeeccCcceEEE
Confidence            1      1245688999999988765421100      0                            0011223445666


Q ss_pred             EeCCCCceeeeccC--cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEE
Q 007283          173 YEGPPFKFKLSHRG--HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLT  250 (609)
Q Consensus       173 ~~~~~~~~~~~~~~--h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s  250 (609)
                      |+..+++....+..  ....+..+.+++++..+++   +..+.+|+..+++.+..+.    .......+.++|++..+..
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~  199 (346)
T d1jmxb_         127 FSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALP----LRNWNRKGYSAPDVLYFWP  199 (346)
T ss_dssp             EEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEEC----STTCCCTTBCCCBCCCCCC
T ss_pred             EecccceeeeEEEeeeccCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEe----cCCCccceEEeccccEEEE
Confidence            76655444333221  1234556677888876554   3568899998888776653    2234556778888876544


Q ss_pred             E-eCCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEE
Q 007283          251 A-SADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTA  329 (609)
Q Consensus       251 ~-s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~  329 (609)
                      . ..++.+.+++.....        .               .....+..+.....+.+|+.............|...+..
T Consensus       200 ~~~~~~~~~~~~~~~~~--------~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (346)
T d1jmxb_         200 HQSPRHEFSMLYTIARF--------K---------------DDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFT  256 (346)
T ss_dssp             CCCTTCEEEEEEEEEEC------------------------------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEE
T ss_pred             EecCCCceEeeeeeeee--------c---------------cCceeEeeccCCceEEEEECCCCceEEEEeecccceeEE
Confidence            4 445566665532100        0               001111222333456666655433333344556667777


Q ss_pred             EEEecCCCCEEEEEecCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCC
Q 007283          330 LTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGS  409 (609)
Q Consensus       330 ~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~  409 (609)
                      +.+++.+.. ++... ++.|.+|+...+                                                    
T Consensus       257 ~~~~~~~~~-~~~~~-~~~v~v~d~~~~----------------------------------------------------  282 (346)
T d1jmxb_         257 GLRSPKDPN-QIYGV-LNRLAKYDLKQR----------------------------------------------------  282 (346)
T ss_dssp             EEECSSCTT-EEEEE-ESEEEEEETTTT----------------------------------------------------
T ss_pred             EEEeCCCCE-EEEec-CCeEEEEECCCC----------------------------------------------------
Confidence            666544433 33332 345666754321                                                    


Q ss_pred             CCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeee
Q 007283          410 QPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLT  482 (609)
Q Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~  482 (609)
                                                   +.+..+.....+.+++|+|||+++++|+.|+.|++||.++.+..
T Consensus       283 -----------------------------~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         283 -----------------------------KLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             -----------------------------EEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             -----------------------------cEEEEEcCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence                                         11111222234778999999999999999999999999877653

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.79  E-value=7.7e-16  Score=151.71  Aligned_cols=199  Identities=9%  Similarity=-0.044  Sum_probs=132.9

Q ss_pred             cCcCceeEEeecCCCCeEEEeC------CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe----------C
Q 007283           14 TERGRGILISGHPKSNSILYTN------GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD----------V   77 (609)
Q Consensus        14 ~~~~~~~~~~~~~~~~~l~~~~------~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~----------~   77 (609)
                      ...|....++++|||..++..+      ...+.++|..+++.+..+..+..  ..++|||||++|+.++          .
T Consensus        18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCccccccc
Confidence            3455566888999999886542      14789999999998877766553  3799999999998764          4


Q ss_pred             CCcEEEEcCCCCceeeEEEeecccc-------eeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEE
Q 007283           78 SGTVRIWGAHNDHVLKKEFRVLSGR-------IDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLS  150 (609)
Q Consensus        78 d~~i~vWd~~~~~~~~~~~~~~~~~-------v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  150 (609)
                      ++.|+|||..+++... .+..+...       ...++|+||++.++....+.. ..+.++.....+.    ..+.....+
T Consensus        96 ~~~v~v~D~~t~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~  169 (373)
T d2madh_          96 TDYVEVFDPVTFLPIA-DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAG-PAVGLVVQGGSSD----DQLLSSPTC  169 (373)
T ss_pred             ceEEEEEECCCCcEEE-EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCC-CceEEeeccCCeE----EEEecccee
Confidence            5789999999876432 23333222       255789999987765542221 1223333333222    233445678


Q ss_pred             EEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccC------cccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 007283          151 CAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRG------HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTAD  221 (609)
Q Consensus       151 ~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~------h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~  221 (609)
                      +.++|++...+++.+.|+.+.+|+....+.......      +......+.+++++. ++..+.++.+.+|+.....
T Consensus       170 ~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         170 YHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAG  245 (373)
T ss_pred             EEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCe
Confidence            899999998889999999999999877655443322      222334455666654 4566678888888866544

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=5.6e-17  Score=157.17  Aligned_cols=283  Identities=12%  Similarity=0.056  Sum_probs=174.7

Q ss_pred             CEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeE-EEEeCCCcEEEeecccCCCCceEEEeccCCC
Q 007283          201 SKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQV-LTASADKSAKVWDISEDNHGKLKKTLTPSGS  279 (609)
Q Consensus       201 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l-~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~  279 (609)
                      +++++++.|++|.+||.++++.+..+.. ..+...+.+++|+|||+++ ++++.++.|++||+..   ++....+.....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~-~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t---~~~~~~~~~~~~   77 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVT---GETLGRIDLSTP   77 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTT---CCEEEEEECCBT
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEEC-CCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCC---CcEEEEEecCCC
Confidence            3789999999999999999998877643 2344568899999999987 5667899999999873   444443321110


Q ss_pred             CCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCcccc
Q 007283          280 GGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYG  359 (609)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~  359 (609)
                      .                                         .+...+..+++++ +++.++.+..+.....|...    
T Consensus        78 ~-----------------------------------------~~~~~~~~v~~s~-dg~~l~~~~~~~~~~~~~~~----  111 (337)
T d1pbyb_          78 E-----------------------------------------ERVKSLFGAALSP-DGKTLAIYESPVRLELTHFE----  111 (337)
T ss_dssp             T-----------------------------------------EEEECTTCEEECT-TSSEEEEEEEEEEECSSCEE----
T ss_pred             c-----------------------------------------ccccceeeEEEcC-CCcEEEEeecCCcceeeecc----
Confidence            0                                         0011122344432 33455555443333322110    


Q ss_pred             ceeccccccceeEeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCe
Q 007283          360 GKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAE  439 (609)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  439 (609)
                                              ..+..+..++....                                         .
T Consensus       112 ------------------------~~~~~~~~~d~~~~-----------------------------------------~  126 (337)
T d1pbyb_         112 ------------------------VQPTRVALYDAETL-----------------------------------------S  126 (337)
T ss_dssp             ------------------------ECCCEEEEEETTTT-----------------------------------------E
T ss_pred             ------------------------ccccceeeccccCC-----------------------------------------e
Confidence                                    01112222222111                                         1


Q ss_pred             eeEEeccCCceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCC-----------------------ceEE
Q 007283          440 VVSTINLRFPVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRG-----------------------AVSV  496 (609)
Q Consensus       440 ~~~~~~~~~~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~-----------------------~i~~  496 (609)
                      ....+.....+..++++|||+++++++.  .+.+||...+.....  ...+..                       .+..
T Consensus       127 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (337)
T d1pbyb_         127 RRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVED--KPIQSWEAETYAQPDVLAVWNQHESSGVMATPF  202 (337)
T ss_dssp             EEEEEECCSSCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEE--ECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEE
T ss_pred             EEEeccccCCceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEE--eecCCccccceecCCcceeeccccccceeeeee
Confidence            1112222234667899999999999864  477899877654322  211110                       0111


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEecc
Q 007283          497 IRYSPDVSMFASGDVNREAIVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGA  576 (609)
Q Consensus       497 v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~  576 (609)
                      .....+......+..++.+.+|+.............+...+.+++++|++.+++.+  |+.|++||+.+.+  .... ..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~--~~~~-~~  277 (337)
T d1pbyb_         203 YTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNA--SIKR-VP  277 (337)
T ss_dssp             EEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTE--EEEE-EE
T ss_pred             eeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc--cccEEEEECCCCc--EEEE-Ec
Confidence            11122222223344556788899877766555556678889999999999998766  5899999997643  2222 23


Q ss_pred             ccCCeEEEEEc-CCCeEEEEeCCCcEEEEEcc
Q 007283          577 HLGGVYGLAFT-DEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       577 h~~~v~~~~~s-~~~~l~s~s~D~~i~~W~~~  607 (609)
                      +...+.+++|+ |+++|++++.|++|++||+.
T Consensus       278 ~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         278 LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             CSSCCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             CCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            56678999999 88899999999999999985

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=7.5e-16  Score=149.01  Aligned_cols=284  Identities=11%  Similarity=0.040  Sum_probs=168.6

Q ss_pred             EEEEecCCCeEEEEeCCCCce--eeeccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccccCcCCCCccce
Q 007283          160 RIATCGEDFLVNFYEGPPFKF--KLSHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSV  236 (609)
Q Consensus       160 ~i~t~~~d~~i~~~~~~~~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V  236 (609)
                      ++++++.|+.|++|+......  ......|...+..|+|+|||++|++++ .|+.|.+|++........+.....+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            578889999999998654321  222335778899999999999885554 58999999987654433222112234557


Q ss_pred             EEEEECCCCCeEEEEeC-CCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEEcCCeEEEEEcCCcEEEEeCCCCCC
Q 007283          237 YAVSWSPDGKQVLTASA-DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLWQNDFLVIVSLGGTISIFSANDLEK  315 (609)
Q Consensus       237 ~~l~~spd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~~~  315 (609)
                      ..++|+|||++|++++. ++.+++|+....   ......                                         
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~---~~~~~~-----------------------------------------  121 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDG---LPVGVV-----------------------------------------  121 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETT---EEEEEE-----------------------------------------
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccc---cceecc-----------------------------------------
Confidence            78999999999998875 678888886521   111000                                         


Q ss_pred             CceeeeCCCCCeEEEEEecCCCCEEEEEe-cCCcEEEEecCccccceeccccccceeEeeeeCCcEEEEeccceEEEEec
Q 007283          316 SPLQLSGHMKNVTALTVLNIDPKVILSSS-YDGLIVKWIQGIGYGGKLQRKENSQIKCFAAIEEEIVTSGFDNKIWRVSL  394 (609)
Q Consensus       316 ~~~~~~~h~~~v~~~~~~~~~~~~~~t~s-~dg~i~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~  394 (609)
                         ....+...+.++.+++. ++.++.++ .+..+.+|+...........                              
T Consensus       122 ---~~~~~~~~~~~v~~s~d-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~------------------------------  167 (333)
T d1ri6a_         122 ---DVVEGLDGCHSANISPD-NRTLWVPALKQDRICLFTVSDDGHLVAQD------------------------------  167 (333)
T ss_dssp             ---EEECCCTTBCCCEECTT-SSEEEEEEGGGTEEEEEEECTTSCEEEEE------------------------------
T ss_pred             ---cccCCCccceEEEeeec-ceeeeccccccceeeEEEeccCCcceeee------------------------------
Confidence               01112223334444433 34444443 55566666432210000000                              


Q ss_pred             cCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCceeEEEEcCCCCEEEEEe-CCCcEEE
Q 007283          395 QGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVTASAIAPDGSEAIIGS-QDGKLRV  473 (609)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~g~~l~~gs-~dg~i~i  473 (609)
                                                                  ..............+++++++..++... ..+...+
T Consensus       168 --------------------------------------------~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v  203 (333)
T d1ri6a_         168 --------------------------------------------PAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDV  203 (333)
T ss_dssp             --------------------------------------------EEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             --------------------------------------------ceeeeeecCCCccEEEEeccceeEEeeccccCceEE
Confidence                                                        0000001112345678888888876654 4566778


Q ss_pred             EEecCCe--eeeeEEEe------cCCCceEEEEECCCCCEEEEE-eCCCeEEEEEccCCceEE--eeecCCCCceEEEEE
Q 007283          474 YSIRGDT--LTEEAVLE------KHRGAVSVIRYSPDVSMFASG-DVNREAIVWDRVSREVKL--KNMLYHTARINCLAW  542 (609)
Q Consensus       474 w~~~~~~--~~~~~~~~------~h~~~i~~v~~s~~~~~l~s~-s~d~~v~iwd~~~~~~~~--~~~~~h~~~i~~l~~  542 (609)
                      |+.....  +.......      ........+++++|++++... ..++++.+|++.......  .....+...+++++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~  283 (333)
T d1ri6a_         204 WELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV  283 (333)
T ss_dssp             EESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEE
T ss_pred             EeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEE
Confidence            8764332  11111111      123456778999999866554 567889999876543222  122234456789999


Q ss_pred             CCCCcEEEEEe-CCCeEEEEEcCC
Q 007283          543 SPNNSMVATGS-LDTCVIIYEIDK  565 (609)
Q Consensus       543 s~d~~~l~s~s-~D~~v~vw~~~~  565 (609)
                      ||||++|++++ .+++|++|+++.
T Consensus       284 spDGk~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         284 DHSGKYLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             CTTSSEEEEECTTTCEEEEEEEET
T ss_pred             eCCCCEEEEEECCCCeEEEEEEEC
Confidence            99999877664 568999998764

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=2.4e-15  Score=145.36  Aligned_cols=228  Identities=11%  Similarity=0.075  Sum_probs=150.9

Q ss_pred             CCCEEEEEeCCCCcccccc--ccCCCCcEEEEECCCCCEEE-EEeCCCcEEEEcCCCCceeeE--EEeecccceeEEEEC
Q 007283           35 NGRSVIILDLSNPLQVSIY--GEHAYPATVARFSPNGEWIA-SADVSGTVRIWGAHNDHVLKK--EFRVLSGRIDDLQWS  109 (609)
Q Consensus        35 ~~~~~~i~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~la-s~~~d~~i~vWd~~~~~~~~~--~~~~~~~~v~~~~~s  109 (609)
                      .+++|.+|++.....+..+  ..|.+.+..++|||||++|+ ++..|+.|++|++........  ....+...+..++|+
T Consensus        12 ~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~s   91 (333)
T d1ri6a_          12 ESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTD   91 (333)
T ss_dssp             GGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEEC
T ss_pred             CCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEc
Confidence            4579999999765443323  36888999999999999995 555689999999986542221  122334567889999


Q ss_pred             CCCCEEEEEECCCCcceEEEEEcCCCCee--EEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceee-----
Q 007283          110 PDGLRIVACGDGKGKSLVRAFMWDSGTNV--GEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKL-----  182 (609)
Q Consensus       110 pdg~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~-----  182 (609)
                      |||++|++.+.+..  .+.++.++.....  .....+...+.++.++|++...++....+..+.+|+........     
T Consensus        92 pDg~~l~v~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  169 (333)
T d1ri6a_          92 HQGQFVFVGSYNAG--NVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPA  169 (333)
T ss_dssp             TTSSEEEEEETTTT--EEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE
T ss_pred             CCCCEEeecccCCC--ceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeece
Confidence            99999998874432  3556666554332  23446667788899999999767666677788888754432111     


Q ss_pred             -eccCcccceEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcccc-------ccCcCCCCccceEEEEECCCCCeEEEE-e
Q 007283          183 -SHRGHSNFVNCVRFSPDGSKFISVS-SDKKGIIYDGKTADKIG-------ELSPEDGHKGSVYAVSWSPDGKQVLTA-S  252 (609)
Q Consensus       183 -~~~~h~~~v~~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~-------~~~~~~~h~~~V~~l~~spd~~~l~s~-s  252 (609)
                       ...........++|++++..+.... ..+...+++........       ..............++++||+++++.. .
T Consensus       170 ~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~  249 (333)
T d1ri6a_         170 EVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDR  249 (333)
T ss_dssp             EEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEET
T ss_pred             eeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecc
Confidence             1122344567899999998776554 45567777654322111       111111233456788999999866655 5


Q ss_pred             CCCcEEEeeccc
Q 007283          253 ADKSAKVWDISE  264 (609)
Q Consensus       253 ~d~~i~iwd~~~  264 (609)
                      .++.+.+|++..
T Consensus       250 ~~~~~~~~~~~~  261 (333)
T d1ri6a_         250 TASLITVFSVSE  261 (333)
T ss_dssp             TTTEEEEEEECT
T ss_pred             cCCeEEEEEEcC
Confidence            567899998753

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=4.6e-16  Score=152.10  Aligned_cols=228  Identities=11%  Similarity=0.066  Sum_probs=140.9

Q ss_pred             eecCCCCeEEEeC------CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEE----------eCCCcEEEEcC
Q 007283           23 SGHPKSNSILYTN------GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASA----------DVSGTVRIWGA   86 (609)
Q Consensus        23 ~~~~~~~~l~~~~------~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~----------~~d~~i~vWd~   86 (609)
                      +.+|||..++..+      ...+.+||..+++.+..+..+.  +..++|||||++|+.+          +.|+.|++||.
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            4578998875432      2479999999998877776554  4479999999988754          34789999999


Q ss_pred             CCCceeeEEEeecc-------cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCcc-------EEEEE
Q 007283           87 HNDHVLKKEFRVLS-------GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRR-------VLSCA  152 (609)
Q Consensus        87 ~~~~~~~~~~~~~~-------~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-------v~~~~  152 (609)
                      .+++.+. .+..+.       .....++|+|||++++...... ...+.+++...++.+..+..+...       ...+.
T Consensus        86 ~t~~~~~-~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (355)
T d2bbkh_          86 VTLLPTA-DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSP-APAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  163 (355)
T ss_dssp             TTCCEEE-EEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSS-SCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCCCEEE-EEecCCcceeecCCCCceEEEecCCCeeEEecCCC-CceeeeeecCCCcEeeEEecCCcceEeecCCcceEE
Confidence            9877543 333222       1245689999999988765333 235667777777766666544322       12344


Q ss_pred             EeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCC
Q 007283          153 FKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGH  232 (609)
Q Consensus       153 ~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h  232 (609)
                      +++++..+++....+..+.+.+....     ...+...+....+.+++..++.++.++.+.+|+...++... +.....+
T Consensus       164 ~~~dg~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~  237 (355)
T d2bbkh_         164 HCRDGSLAKVAFGTEGTPEITHTEVF-----HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKF-LPAVEAL  237 (355)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCC-----SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEE-CCCEESS
T ss_pred             EcCCCCEEEEEecCCCeEEEEecccc-----cceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEE-EeccCCc
Confidence            55555543333333333333333222     12344456667788888889999999999999987765321 1111233


Q ss_pred             ccceEEEEECCCCCeEEEEeCCCcEEEe
Q 007283          233 KGSVYAVSWSPDGKQVLTASADKSAKVW  260 (609)
Q Consensus       233 ~~~V~~l~~spd~~~l~s~s~d~~i~iw  260 (609)
                      ........+.|++...+..+.|+...++
T Consensus       238 ~~~~~~~~~~p~~~~~~~~~~d~~~~~~  265 (355)
T d2bbkh_         238 TEAERADGWRPGGWQQVAYHRALDRIYL  265 (355)
T ss_dssp             CHHHHHTTEEECSSSCEEEETTTTEEEE
T ss_pred             ccceEeeeeeccceEEEEEeCCCCeEEE
Confidence            3333444455666555555555554444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=3.1e-15  Score=146.08  Aligned_cols=285  Identities=15%  Similarity=0.090  Sum_probs=172.3

Q ss_pred             EEeeCCCeEEEEe----cCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEe----------CCCcEEEEeC
Q 007283          152 AFKPSRPFRIATC----GEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVS----------SDKKGIIYDG  217 (609)
Q Consensus       152 ~~~p~~~~~i~t~----~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~----------~d~~i~iwd~  217 (609)
                      +.+|++...+++.    ..+..+.+||..+++....+..+.  ...++|+|||++|++++          .|+.|.+||.
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~--~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF--LPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS--SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC--CCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            4578888655543    345679999999988877765443  34799999999887653          4788999999


Q ss_pred             CCCccccccCcCCCC----ccceEEEEECCCCCeEEEEe--CCCcEEEeecccCCCCceEEEeccCCCCCccceEEEEEE
Q 007283          218 KTADKIGELSPEDGH----KGSVYAVSWSPDGKQVLTAS--ADKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVGCLW  291 (609)
Q Consensus       218 ~~~~~~~~~~~~~~h----~~~V~~l~~spd~~~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (609)
                      .+++....+.....+    ......+.|+|++++++..+  .+..+.+|+...   ++....+.....            
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~------------  150 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEG---KAFKRMLDVPDC------------  150 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTT---TEEEEEEECCSE------------
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCC---CcEeeEEecCCc------------
Confidence            998876554321111    22345689999999887764  457788998752   333333221100            


Q ss_pred             cCCeEEEEEcCCcEEEEeCCCCCCCceeeeCCCCCeEEEEEecCCCCEEEEEecCCcEEEEecCccccceecccccccee
Q 007283          292 QNDFLVIVSLGGTISIFSANDLEKSPLQLSGHMKNVTALTVLNIDPKVILSSSYDGLIVKWIQGIGYGGKLQRKENSQIK  371 (609)
Q Consensus       292 ~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~t~s~dg~i~~W~~~~~~~~~~~~~~~~~~~  371 (609)
                                                           ...+ ...+...+..+.|+....+......             
T Consensus       151 -------------------------------------~~~~-~~~~~~~~~~~~dg~~~~v~~~~~~-------------  179 (355)
T d2bbkh_         151 -------------------------------------YHIF-PTAPDTFFMHCRDGSLAKVAFGTEG-------------  179 (355)
T ss_dssp             -------------------------------------EEEE-EEETTEEEEEETTSCEEEEECCSSS-------------
T ss_pred             -------------------------------------ceEe-ecCCcceEEEcCCCCEEEEEecCCC-------------
Confidence                                                 0000 0011233444555555444221100             


Q ss_pred             EeeeeCCcEEEEeccceEEEEeccCCccccccccccCCCCceeEeeccCCcEEEEEecccEEEeeCCeeeEEeccCCcee
Q 007283          372 CFAAIEEEIVTSGFDNKIWRVSLQGDQCGYANSIDIGSQPKDLSVALHYPELVLVSTDSGVVLLRGAEVVSTINLRFPVT  451 (609)
Q Consensus       372 ~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (609)
                                      .+..+.......                                             .....+.
T Consensus       180 ----------------~~~~~~~~~~~~---------------------------------------------~~~~~~~  198 (355)
T d2bbkh_         180 ----------------TPEITHTEVFHP---------------------------------------------EDEFLIN  198 (355)
T ss_dssp             ----------------CCEEEECCCCSC---------------------------------------------TTSCBCS
T ss_pred             ----------------eEEEEecccccc---------------------------------------------eecceee
Confidence                            000000000000                                             0001122


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCC----------CceEEEEECCCCCEEEEEeCC---------
Q 007283          452 ASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHR----------GAVSVIRYSPDVSMFASGDVN---------  512 (609)
Q Consensus       452 ~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~----------~~i~~v~~s~~~~~l~s~s~d---------  512 (609)
                      ..++++++..++.++.++.+++|++..+..........+.          .....++++|++..++..+.+         
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  278 (355)
T d2bbkh_         199 HPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTA  278 (355)
T ss_dssp             CCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSC
T ss_pred             eccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCC
Confidence            3355677888888999999999998776532222222221          123457889999888776544         


Q ss_pred             -CeEEEEEccCCceEEeeecCCCCceEEEEECCCCc--EEEEEeCCCeEEEEEcCCCC
Q 007283          513 -REAIVWDRVSREVKLKNMLYHTARINCLAWSPNNS--MVATGSLDTCVIIYEIDKPA  567 (609)
Q Consensus       513 -~~v~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~--~l~s~s~D~~v~vw~~~~~~  567 (609)
                       .++.+||..+.+... .+ .+...+.+++|||||+  +++++..|++|.|||..+++
T Consensus       279 ~~~v~v~d~~t~~~~~-~~-~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~  334 (355)
T d2bbkh_         279 SRFVVVLDAKTGERLA-KF-EMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGE  334 (355)
T ss_dssp             EEEEEEEETTTCCEEE-EE-EEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCC
T ss_pred             CCeEEEEeCCCCcEEE-Ee-cCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCC
Confidence             469999988776432 22 2455689999999997  46778889999999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.62  E-value=6.8e-14  Score=142.26  Aligned_cols=101  Identities=12%  Similarity=0.227  Sum_probs=80.4

Q ss_pred             ceeEEeecCCCCeEEEeCCCEEEEEeCCCCccccc-----cccCCCCcEEEEECCCCCEEEEEeC---------CCcEEE
Q 007283           18 RGILISGHPKSNSILYTNGRSVIILDLSNPLQVSI-----YGEHAYPATVARFSPNGEWIASADV---------SGTVRI   83 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~-----~~~h~~~v~~~~~sp~g~~las~~~---------d~~i~v   83 (609)
                      +...+...|+++ ++|..++.+++||+.+++....     +..|...|.++.|||||++||.++.         ++.+.|
T Consensus        18 ~~~~~~W~~d~~-~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          18 KLYSLRWISDHE-YLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCCCCEECSSSE-EEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             cccCCEeCCCCE-EEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            445677888876 5677888899999999886543     4456678999999999999998753         567899


Q ss_pred             EcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECC
Q 007283           84 WGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDG  121 (609)
Q Consensus        84 Wd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~  121 (609)
                      ||+.+++.  ..+..+.+.+..+.|||||++++.+.++
T Consensus        97 ~d~~~~~~--~~l~~~~~~~~~~~~SPDG~~ia~~~~~  132 (470)
T d2bgra1          97 YDLNKRQL--ITEERIPNNTQWVTWSPVGHKLAYVWNN  132 (470)
T ss_dssp             EETTTTEE--CCSSCCCTTEEEEEECSSTTCEEEEETT
T ss_pred             EECCCCcc--cccccCCccccccccccCcceeeEeecc
Confidence            99998763  2466778889999999999999998754

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.52  E-value=4.9e-13  Score=135.79  Aligned_cols=160  Identities=17%  Similarity=0.199  Sum_probs=108.1

Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEcCCCCceeeE----EEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCe
Q 007283           62 VARFSPNGEWIASADVSGTVRIWGAHNDHVLKK----EFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTN  137 (609)
Q Consensus        62 ~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~----~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~  137 (609)
                      .+.|.|+++++..  .|+++.+||+.+++....    .+..+...|..++|||||++|+...+..       ..|.    
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~-------~~~r----   87 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYV-------KQWR----   87 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE-------ECSS----
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCc-------ceee----
Confidence            4679999998874  478899999998763211    1222345789999999999988754311       0110    


Q ss_pred             eEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 007283          138 VGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDG  217 (609)
Q Consensus       138 ~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~  217 (609)
                            |                    +.++.+.+||...++. ..+..|...+..+.|||||+.||.. .+..+.+|+.
T Consensus        88 ------~--------------------s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~  139 (470)
T d2bgra1          88 ------H--------------------SYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIE  139 (470)
T ss_dssp             ------S--------------------CEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred             ------e--------------------ccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccceEEEC
Confidence                  0                    1123467788887664 4567788889999999999999986 4678999998


Q ss_pred             CCCccccccCcCC---------------CCccceEEEEECCCCCeEEEEeCCCc-EEEeec
Q 007283          218 KTADKIGELSPED---------------GHKGSVYAVSWSPDGKQVLTASADKS-AKVWDI  262 (609)
Q Consensus       218 ~~~~~~~~~~~~~---------------~h~~~V~~l~~spd~~~l~s~s~d~~-i~iwd~  262 (609)
                      .+++.........               ...+....+.|||||++|+....|.+ ++.|.+
T Consensus       140 ~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         140 PNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             TTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred             CCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence            8776543321100               01233466889999999999876644 554443

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.45  E-value=2.9e-12  Score=125.41  Aligned_cols=249  Identities=9%  Similarity=0.010  Sum_probs=149.2

Q ss_pred             CcCceeEEeecCCCCe--EEEeC---C-CEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe----------CC
Q 007283           15 ERGRGILISGHPKSNS--ILYTN---G-RSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD----------VS   78 (609)
Q Consensus        15 ~~~~~~~~~~~~~~~~--l~~~~---~-~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~----------~d   78 (609)
                      ..|....++..+++..  ++.++   + ..+.++|..+++.+....++..+  .++|+|||++|+.++          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            3555556667777764  34332   2 46788899999887777666544  689999999998643          47


Q ss_pred             CcEEEEcCCCCceeeEEEeeccc-------ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCcc----
Q 007283           79 GTVRIWGAHNDHVLKKEFRVLSG-------RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRR----  147 (609)
Q Consensus        79 ~~i~vWd~~~~~~~~~~~~~~~~-------~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~----  147 (609)
                      ++|++||..+.+... .+..+..       ....++|||||++|++...+..  .+.+|+....+.+..+..+...    
T Consensus        96 ~~v~v~D~~t~~~~~-~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~--~v~~~d~~~~~~~~~~~~~~~~~~~~  172 (368)
T d1mdah_          96 DYVEVFDPVTFLPIA-DIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSS--AAAGLSVPGASDDQLTKSASCFHIHP  172 (368)
T ss_dssp             EEEEEECTTTCCEEE-EEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSS--CEEEEEETTTEEEEEEECSSCCCCEE
T ss_pred             CeEEEEECCCCcEee-eecCCccceecccCCccceEECCCCCEEEEEeCCCC--eEEEEECCCCcEeEEeeccCcceEcc
Confidence            789999999876433 3333221       2346899999999987653322  3556676676666655443221    


Q ss_pred             ---EEEEEEeeCCCeEEEEecCCC-----------------------------------eEEEEeCCCCceee--eccCc
Q 007283          148 ---VLSCAFKPSRPFRIATCGEDF-----------------------------------LVNFYEGPPFKFKL--SHRGH  187 (609)
Q Consensus       148 ---v~~~~~~p~~~~~i~t~~~d~-----------------------------------~i~~~~~~~~~~~~--~~~~h  187 (609)
                         ...+++++++...+......+                                   .+.+.+....+...  ....+
T Consensus       173 ~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  252 (368)
T d1mdah_         173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGN  252 (368)
T ss_dssp             EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSS
T ss_pred             CCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccc
Confidence               122344444443222211111                                   01111111100000  00000


Q ss_pred             ----------ccceEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCe-
Q 007283          188 ----------SNFVNCVRFSPDGSKFISVSSD---------KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQ-  247 (609)
Q Consensus       188 ----------~~~v~~l~~s~dg~~l~s~~~d---------~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~-  247 (609)
                                ......++++|++..+.....+         ..+.+||..+++.+..+.    +...+.+++|+|||+. 
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~----~~~~~~~~a~spDG~~~  328 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS----NGHDSDAIIAAQDGASD  328 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE----EEEEECEEEECCSSSCE
T ss_pred             cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEec----CCCceeEEEECCCCCEE
Confidence                      0112357788888866554322         248899999998877663    4467889999999973 


Q ss_pred             -EEEEeCCCcEEEeecccCCCCceEEEec
Q 007283          248 -VLTASADKSAKVWDISEDNHGKLKKTLT  275 (609)
Q Consensus       248 -l~s~s~d~~i~iwd~~~~~~~~~~~~~~  275 (609)
                       +++++.|++|++||..   .++.+..+.
T Consensus       329 ly~s~~~~~~v~v~D~~---tgk~~~~i~  354 (368)
T d1mdah_         329 NYANSAGTEVLDIYDAA---SDQDQSSVE  354 (368)
T ss_dssp             EEEEETTTTEEEEEESS---SCEEEEECC
T ss_pred             EEEEeCCCCeEEEEECC---CCCEEEEEE
Confidence             4677789999999986   466666654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.34  E-value=6.1e-13  Score=129.48  Aligned_cols=164  Identities=12%  Similarity=0.017  Sum_probs=103.3

Q ss_pred             EEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEE
Q 007283           72 IASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSC  151 (609)
Q Consensus        72 las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  151 (609)
                      ++|++.+|+|+||++.+.+.+++ +.         .|+||+.+.... ++...   +  ++........-..|.......
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~-Ip---------Vfspd~~~g~g~-~~es~---~--vl~~~~~~~~gd~hhP~~s~t   77 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMR-IP---------VFNVDSATGWGI-TNESK---E--ILGGDQQYLNGDCHHPHISMT   77 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEE-EC---------SSSBCTTTCTTT-SHHHH---H--HHCSSSCCSCCCBCCCEEEEE
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEE-EE---------eEcCCCCEEEEE-CCccc---e--EEecccccccCcccCCCccee
Confidence            45788899999999988775543 21         388887532111 00000   0  011111111123455556666


Q ss_pred             EEeeCCCeEEEEecCCCeEEEEeCCCCceeeec-cCcccceEEEEEcCCCC--EEEEEeCCCc-----------------
Q 007283          152 AFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH-RGHSNFVNCVRFSPDGS--KFISVSSDKK-----------------  211 (609)
Q Consensus       152 ~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~-~~h~~~v~~l~~s~dg~--~l~s~~~d~~-----------------  211 (609)
                      .++|||.+++++...+..+.++|..+++..... ..+......++|+|+|+  +++..+.+..                 
T Consensus        78 ~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~  157 (441)
T d1qnia2          78 DGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTM  157 (441)
T ss_dssp             TTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEE
T ss_pred             cccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccce
Confidence            678999988888888899999999998876554 34566789999999998  3443333321                 


Q ss_pred             EEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCC
Q 007283          212 GIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADK  255 (609)
Q Consensus       212 i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~  255 (609)
                      +..+|..+.+...++..    .+....+.|+|||+++++.+.+.
T Consensus       158 ~~~iD~~t~~v~~qI~v----~~~p~~v~~spdGk~a~vt~~ns  197 (441)
T d1qnia2         158 FTAIDAETMDVAWQVIV----DGNLDNTDADYTGKYATSTCYNS  197 (441)
T ss_dssp             EEEEETTTCSEEEEEEE----SSCCCCEEECSSSSEEEEEESCT
T ss_pred             EEeecCccceeeEEEec----CCCccceEECCCCCEEEEEecCC
Confidence            23466666555544421    23467899999999988887653

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.32  E-value=7.5e-12  Score=122.40  Aligned_cols=163  Identities=11%  Similarity=-0.054  Sum_probs=97.6

Q ss_pred             cCCCCcEEEEECCCCCE--EE-EEeCCCcEEEE--cCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           55 EHAYPATVARFSPNGEW--IA-SADVSGTVRIW--GAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~--la-s~~~d~~i~vW--d~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      .+.++...++..|+|+.  ++ +.+.+++.+||  |..+++.+.. ...+..  ..++|+|||++|++.+....      
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-~~~~~~--~~~a~spDg~~i~~~~~~~~------   87 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-SLGAFL--SLAVAGHSGSDFALASTSFA------   87 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-EEECTT--CEEEECTTSSCEEEEEEEET------
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-EeCCCC--CcceECCCCCEEEEEcccCc------
Confidence            34555566677888885  33 45567775555  7777765443 333332  35899999988887542100      


Q ss_pred             EEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcc-------cceEEEEEcCCCCE
Q 007283          130 FMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHS-------NFVNCVRFSPDGSK  202 (609)
Q Consensus       130 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~-------~~v~~l~~s~dg~~  202 (609)
                                                    +++.|+.|..|.+||..+++.......+.       .....++|+|||++
T Consensus        88 ------------------------------~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~  137 (368)
T d1mdah_          88 ------------------------------RSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSAC  137 (368)
T ss_dssp             ------------------------------TTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSC
T ss_pred             ------------------------------cccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCE
Confidence                                          13345566677888877766554432221       12346899999998


Q ss_pred             EEEEe-CCCcEEEEeCCCCccccccCcCCCCccceEEEEECC-CCCeEEEEeCCCcEEEeecc
Q 007283          203 FISVS-SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSP-DGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       203 l~s~~-~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~sp-d~~~l~s~s~d~~i~iwd~~  263 (609)
                      |+++. .++.+.+||..+++....+..   +....    +.| ....++..+.||++..|++.
T Consensus       138 l~va~~~~~~v~~~d~~~~~~~~~~~~---~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         138 LLFFLFGSSAAAGLSVPGASDDQLTKS---ASCFH----IHPGAAATHYLGSCPASLAASDLA  193 (368)
T ss_dssp             EEEEECSSSCEEEEEETTTEEEEEEEC---SSCCC----CEEEETTEEECCCCTTSCEEEECC
T ss_pred             EEEEeCCCCeEEEEECCCCcEeEEeec---cCcce----EccCCCceEEEEcCCCCEEEEEec
Confidence            88776 578999999998887665431   11110    111 22344555566666666654

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.6e-09  Score=100.30  Aligned_cols=218  Identities=15%  Similarity=0.083  Sum_probs=133.0

Q ss_pred             EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEE
Q 007283           38 SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIV  116 (609)
Q Consensus        38 ~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~  116 (609)
                      .+.|.|........ +..+...+...+|||||++||-.. ..+.-.+|...........+..+.+......|||||+.++
T Consensus        20 ~l~i~d~dG~~~~~-l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~   98 (269)
T d2hqsa1          20 ELRVSDYDGYNQFV-VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA   98 (269)
T ss_dssp             EEEEEETTSCSCEE-EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEE
T ss_pred             EEEEEcCCCCCcEE-EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeee
Confidence            57888875544444 444567789999999999999544 3443344433322223345666778889999999999999


Q ss_pred             EEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE--eCCCCceeeeccCcccceEEE
Q 007283          117 ACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY--EGPPFKFKLSHRGHSNFVNCV  194 (609)
Q Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~--~~~~~~~~~~~~~h~~~v~~l  194 (609)
                      ......+...+..+..... ................+++++...+.+...++...+|  +....... ....+.......
T Consensus        99 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~  176 (269)
T d2hqsa1          99 FALSKTGSLNLYVMDLASG-QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDA  176 (269)
T ss_dssp             EEECTTSSCEEEEEETTTC-CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEE
T ss_pred             EeeecCCccceeecccccc-cceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeeccccccccc
Confidence            8876554433322222222 2222233344445566777777667766666544444  44433222 233345567778


Q ss_pred             EEcCCCCEEEEEeCCC-cE--EEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC---CCcEEEeecc
Q 007283          195 RFSPDGSKFISVSSDK-KG--IIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA---DKSAKVWDIS  263 (609)
Q Consensus       195 ~~s~dg~~l~s~~~d~-~i--~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~---d~~i~iwd~~  263 (609)
                      .|+|+|+.++..+.++ ..  .+.+...+.. ...    .+........|||||++|+-.+.   ...|.++++.
T Consensus       177 ~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~-~~~----~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         177 DVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVL----SSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             EECTTSSEEEEEEECSSCEEEEEEETTTCCE-EEC----CCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETT
T ss_pred             ccccccceeEEEeecCCceeeeEeecccccc-eEe----ecCccccceEECCCCCEEEEEEcCCCCcEEEEEECC
Confidence            9999999888766543 33  4445444432 111    23456778899999998875543   3467788876

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.23  E-value=1.5e-10  Score=112.38  Aligned_cols=235  Identities=12%  Similarity=0.015  Sum_probs=150.4

Q ss_pred             CceeEEeecCCCCeEEEe--CCCEEEEEeCCCCccccccc-cCCCCcEEEEECCCCC--EEEEEeCCC------------
Q 007283           17 GRGILISGHPKSNSILYT--NGRSVIILDLSNPLQVSIYG-EHAYPATVARFSPNGE--WIASADVSG------------   79 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~--~~~~~~i~~~~~~~~~~~~~-~h~~~v~~~~~sp~g~--~las~~~d~------------   79 (609)
                      +...-..++|||++|+..  +.++|.++|+.+.+...++. .+......++|+|+|+  |++..+.+.            
T Consensus        72 P~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~  151 (441)
T d1qnia2          72 PHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL  151 (441)
T ss_dssp             CEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred             CCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence            333345578999988555  34799999999887655443 4556788999999999  555544332            


Q ss_pred             -----cEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCc------------ceEEEEEc----------
Q 007283           80 -----TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGK------------SLVRAFMW----------  132 (609)
Q Consensus        80 -----~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~------------~~~~~~~~----------  132 (609)
                           .+..+|..+.+... +... .+....++|+|||+++++...+.+.            ..+.+..|          
T Consensus       152 ~~~~~~~~~iD~~t~~v~~-qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dG  229 (441)
T d1qnia2         152 DNSYTMFTAIDAETMDVAW-QVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAG  229 (441)
T ss_dssp             GGEEEEEEEEETTTCSEEE-EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTT
T ss_pred             ccccceEEeecCccceeeE-EEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCC
Confidence                 23456666654332 2222 3457889999999999877643211            11112222          


Q ss_pred             ----------------CCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee--------eec---c
Q 007283          133 ----------------DSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK--------LSH---R  185 (609)
Q Consensus       133 ----------------~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~--------~~~---~  185 (609)
                                      .....+..+..... ...++++|||.++++++..+.++.+||.+..+..        ...   .
T Consensus       230 k~~~v~~~~v~vvd~~~~~~v~~~IPvgks-PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~  308 (441)
T d1qnia2         230 NFKTIGDSKVPVVDGRGESEFTRYIPVPKN-PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEP  308 (441)
T ss_dssp             CCBCCTTCCCCEEECSSSCSSEEEECCBSS-CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECC
T ss_pred             CEEEeCCCCcEEEEcccCCceEEEEeCCCC-ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeec
Confidence                            12223333433322 4568999999998999999999999996542211        001   1


Q ss_pred             CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCC---------Cc-cccccC--cCCCCccceEEEEECCCCCeEEEEeC
Q 007283          186 GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKT---------AD-KIGELS--PEDGHKGSVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       186 ~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~---------~~-~~~~~~--~~~~h~~~V~~l~~spd~~~l~s~s~  253 (609)
                      ...-.....+|.++|..+.+...|..|..|++..         .. .+..+.  -..||...+.+.+|+|||++|++++.
T Consensus       309 ~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k  388 (441)
T d1qnia2         309 ELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSK  388 (441)
T ss_dssp             BCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEES
T ss_pred             ccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCc
Confidence            1112245568999998888889999999998531         11 111110  12478888888999999999999954


Q ss_pred             C
Q 007283          254 D  254 (609)
Q Consensus       254 d  254 (609)
                      -
T Consensus       389 ~  389 (441)
T d1qnia2         389 F  389 (441)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=2e-08  Score=92.54  Aligned_cols=218  Identities=15%  Similarity=0.161  Sum_probs=138.3

Q ss_pred             eeEEeecCCCCeEEEeC----CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCCCceee
Q 007283           19 GILISGHPKSNSILYTN----GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHNDHVLK   93 (609)
Q Consensus        19 ~~~~~~~~~~~~l~~~~----~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~~~~~~   93 (609)
                      .+.-.++|||+.|+|..    ...+.+.+..++... .+..+.+......|||+|+.|+... .++...++.........
T Consensus        41 ~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~  119 (269)
T d2hqsa1          41 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI  119 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE
T ss_pred             eeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeecccccccc
Confidence            45678999999999862    246777887776654 3556778889999999999998654 34444444333222222


Q ss_pred             EEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEE
Q 007283           94 KEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY  173 (609)
Q Consensus        94 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~  173 (609)
                      ..............+++++..++.+....+...+.....+... ...+..+........++|++..++......+...+|
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~i~  198 (269)
T d2hqsa1         120 RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA-PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIA  198 (269)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSC-CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEE
T ss_pred             eeeeeccccccccccccccccceecccccCCceEeeeeccccc-ceeeecccccccccccccccceeEEEeecCCceeee
Confidence            2233344455677899998887777654443334344444332 223345566677889999999866666665555554


Q ss_pred             --eCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCccccccCcCCCCccceEEEEECCC
Q 007283          174 --EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSD---KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPD  244 (609)
Q Consensus       174 --~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d---~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd  244 (609)
                        +.......  ...+........|+|||+.|+..+..   ..+.+++...+.. ..+.   ...+.+...+|||-
T Consensus       199 ~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt---~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         199 KQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLP---ATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECC---CSSSEEEEEEECCC
T ss_pred             Eeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEe---CCCCcEEeEEeCCC
Confidence              44433332  22334456678899999998866543   4677888876554 3332   34567888999983

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.13  E-value=5.9e-09  Score=100.84  Aligned_cols=243  Identities=10%  Similarity=0.011  Sum_probs=143.4

Q ss_pred             eEEeecCCCCeEEEeCCCEEEEEeCCCCcccccccc--CCCCcEEEEECCCCCE--EEEEe-CCCcEEEEcCCCCceeeE
Q 007283           20 ILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGE--HAYPATVARFSPNGEW--IASAD-VSGTVRIWGAHNDHVLKK   94 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~--h~~~v~~~~~sp~g~~--las~~-~d~~i~vWd~~~~~~~~~   94 (609)
                      .-++++|+++.|+..+...+..|.+...........  ..+....++++|+|+.  +++++ ..++|..+.+........
T Consensus        43 s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~  122 (365)
T d1jofa_          43 SWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGN  122 (365)
T ss_dssp             SEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEE
T ss_pred             CEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcce
Confidence            358899999988777777777777754332222221  2234556788999984  44443 245555543322111000


Q ss_pred             E----------------EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeE---EEe--cCCccEEEEEE
Q 007283           95 E----------------FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVG---EFD--GHSRRVLSCAF  153 (609)
Q Consensus        95 ~----------------~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~h~~~v~~~~~  153 (609)
                      .                .+.....+..++|+|||++++++..+.+.  +.++.++....+.   ...  ........++|
T Consensus       123 ~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~--v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f  200 (365)
T d1jofa_         123 VFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANK--LWTHRKLASGEVELVGSVDAPDPGDHPRWVAM  200 (365)
T ss_dssp             EEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTE--EEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred             eEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCE--EEEEEccCCCceeeccceeecCCCCceEEEEE
Confidence            0                11112236789999999999998766543  4455555432221   111  23456788999


Q ss_pred             eeCCCeEEEEecCCCeEEEEeCCCCcee--ee-----------------ccCcccceEEEEEcCCCCEEEEEeC--C---
Q 007283          154 KPSRPFRIATCGEDFLVNFYEGPPFKFK--LS-----------------HRGHSNFVNCVRFSPDGSKFISVSS--D---  209 (609)
Q Consensus       154 ~p~~~~~i~t~~~d~~i~~~~~~~~~~~--~~-----------------~~~h~~~v~~l~~s~dg~~l~s~~~--d---  209 (609)
                      +|++....++...+..+.+|+....+..  ..                 ...+......+.++|||++|.++..  +   
T Consensus       201 ~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~  280 (365)
T d1jofa_         201 HPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL  280 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS
T ss_pred             CCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCcc
Confidence            9999987888888899999886543221  11                 0112234567899999998877632  1   


Q ss_pred             -CcEEEEeCCCCcccccc---CcCCCCccceEEEEECC-CCCeEEEE-eCCCcEEEeeccc
Q 007283          210 -KKGIIYDGKTADKIGEL---SPEDGHKGSVYAVSWSP-DGKQVLTA-SADKSAKVWDISE  264 (609)
Q Consensus       210 -~~i~iwd~~~~~~~~~~---~~~~~h~~~V~~l~~sp-d~~~l~s~-s~d~~i~iwd~~~  264 (609)
                       ..+..|+......+...   .........-..++|+| +|++|+.+ ..++.|.+|+++.
T Consensus       281 ~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~  341 (365)
T d1jofa_         281 QGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD  341 (365)
T ss_dssp             CCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred             ceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeC
Confidence             23556654432221111   00011223456789998 78977666 5679999998763

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.99  E-value=1.7e-07  Score=85.63  Aligned_cols=237  Identities=11%  Similarity=-0.006  Sum_probs=144.3

Q ss_pred             CcCceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccc-cccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce
Q 007283           15 ERGRGILISGHPKSNSILYTN--GRSVIILDLSNPLQV-SIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHV   91 (609)
Q Consensus        15 ~~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~-~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~   91 (609)
                      ++..|..|+.+++|+..+...  .+.+..++....... ..+.+. .....++++|+|++.++....+.+++++-.+...
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL-YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSC-CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCc-cCceEEEEcCCCCEEEeeeeeceeeeeeecccee
Confidence            356788999999998665443  245555555433222 222222 2356789999999988877777787776544332


Q ss_pred             eeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC-eeEEEe-cCCccEEEEEEeeCCCeEEEEecCCCe
Q 007283           92 LKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT-NVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDFL  169 (609)
Q Consensus        92 ~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~~  169 (609)
                      .. .. ........+++.++|..+++-..+  .   ++...+... ....+. .-......+++.|++.. +++...+..
T Consensus        91 ~~-~~-~~~~~p~~iavd~~g~i~v~d~~~--~---~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~-~v~~~~~~~  162 (260)
T d1rwia_          91 VL-PF-DGLNYPEGLAVDTQGAVYVADRGN--N---RVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNV-YVTDTDNNR  162 (260)
T ss_dssp             EC-CC-CSCCSEEEEEECTTCCEEEEEGGG--T---EEEEECTTCSSCEECCCCSCCSCCEEEECTTCCE-EEEEGGGTE
T ss_pred             ee-ee-eeeeecccccccccceeEeecccc--c---cccccccccceeeeeeecccCCcceeeecCCCCE-eeecccccc
Confidence            11 11 112456889999999866653211  1   123333221 111111 11234567899998874 666666777


Q ss_pred             EEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEE
Q 007283          170 VNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVL  249 (609)
Q Consensus       170 i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~  249 (609)
                      +..++...................|++.++|+++++-...+.+..++...... ..+. . ..-.....|+++++|.+++
T Consensus       163 i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~-~~~~-~-~~~~~P~~i~~d~~g~l~v  239 (260)
T d1rwia_         163 VVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS-TVLP-F-TGLNTPLAVAVDSDRTVYV  239 (260)
T ss_dssp             EEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCC-EECC-C-CSCCCEEEEEECTTCCEEE
T ss_pred             ccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeE-EEEc-c-CCCCCeEEEEEeCCCCEEE
Confidence            88888654433332234455678899999999888777788888887654322 1111 1 1223467899999999888


Q ss_pred             EEeCCCcEEEeecc
Q 007283          250 TASADKSAKVWDIS  263 (609)
Q Consensus       250 s~s~d~~i~iwd~~  263 (609)
                      +-..+++|+.++..
T Consensus       240 ad~~~~rI~~i~~~  253 (260)
T d1rwia_         240 ADRGNDRVVKLTSL  253 (260)
T ss_dssp             EEGGGTEEEEECCC
T ss_pred             EECCCCEEEEEeCC
Confidence            87778888877654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.92  E-value=4.5e-07  Score=87.24  Aligned_cols=208  Identities=9%  Similarity=0.061  Sum_probs=118.5

Q ss_pred             CCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEE-eecccceeEEEECCCCCEEEEEECCC-Ccc--------
Q 007283           56 HAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEF-RVLSGRIDDLQWSPDGLRIVACGDGK-GKS--------  125 (609)
Q Consensus        56 h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~-~~~~~~v~~~~~spdg~~l~~~~~~~-~~~--------  125 (609)
                      +..+++-++|+|+|++|.+++. +.+..|.+.....+.... .........++++||++.+.....+. ...        
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            3445678999999999987765 567788776433222111 12234567889999998554333211 111        


Q ss_pred             ---eEEEEEcCCCCee-EEE----ecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeC-CCCceeee----ccCcccceE
Q 007283          126 ---LVRAFMWDSGTNV-GEF----DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEG-PPFKFKLS----HRGHSNFVN  192 (609)
Q Consensus       126 ---~~~~~~~~~~~~~-~~~----~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~-~~~~~~~~----~~~h~~~v~  192 (609)
                         ...+...+....+ ...    ......+.++.|+|++.+.+++......+.+|+. ..++....    .........
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence               1111222211110 000    1122347799999999987776655556666653 33332211    122345678


Q ss_pred             EEEEcCCCCEEEEEe-CCCcEEEEeCCCCccccc-----cC-----------cCCCCccceEEEEECCCCCeEEEEeC-C
Q 007283          193 CVRFSPDGSKFISVS-SDKKGIIYDGKTADKIGE-----LS-----------PEDGHKGSVYAVSWSPDGKQVLTASA-D  254 (609)
Q Consensus       193 ~l~~s~dg~~l~s~~-~d~~i~iwd~~~~~~~~~-----~~-----------~~~~h~~~V~~l~~spd~~~l~s~s~-d  254 (609)
                      .+.|+|+|+++.+.. .+++|.+|+...++....     ..           ....+......+.++|||++|+++.. +
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            899999999775554 578899998765442211     00           00122334668899999999887743 2


Q ss_pred             -----CcEEEeeccc
Q 007283          255 -----KSAKVWDISE  264 (609)
Q Consensus       255 -----~~i~iwd~~~  264 (609)
                           ..|..|++..
T Consensus       277 ~~~~~~~i~~~~~~~  291 (365)
T d1jofa_         277 KFELQGYIAGFKLRD  291 (365)
T ss_dssp             STTSCCEEEEEEECT
T ss_pred             CCccceEEEEEEecC
Confidence                 2366676653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.92  E-value=7.2e-07  Score=83.69  Aligned_cols=250  Identities=10%  Similarity=0.066  Sum_probs=150.7

Q ss_pred             ceeecCCCccCcCceeEEeecCCCCeEEEeCC--------CEEEEEeCCCCccccccccCC----CCcEEEEECCCCCEE
Q 007283            5 AETYTCVPSTERGRGILISGHPKSNSILYTNG--------RSVIILDLSNPLQVSIYGEHA----YPATVARFSPNGEWI   72 (609)
Q Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~i~~~~~~~~~~~~~~h~----~~v~~~~~sp~g~~l   72 (609)
                      ++-....+.+|.     ++++|+|+.++....        ++|..+|..++..........    +.-..++|.|+|+.|
T Consensus        11 ~~v~~~~~g~EG-----pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l   85 (314)
T d1pjxa_          11 TKVTEDIPGAEG-----PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQL   85 (314)
T ss_dssp             EEEECCCTTCEE-----EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEE
T ss_pred             EEeecCCCCCeE-----eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEE
Confidence            333346666543     467899987665422        357788887765433222111    224579999999988


Q ss_pred             EEEeCCCcEEEEcCCCCceeeEEEeeccc----ceeEEEECCCCCEEEEEECCC----------CcceEEEEEcCCCCee
Q 007283           73 ASADVSGTVRIWGAHNDHVLKKEFRVLSG----RIDDLQWSPDGLRIVACGDGK----------GKSLVRAFMWDSGTNV  138 (609)
Q Consensus        73 as~~~d~~i~vWd~~~~~~~~~~~~~~~~----~v~~~~~spdg~~l~~~~~~~----------~~~~~~~~~~~~~~~~  138 (609)
                      ..++....|...+.+....... .....+    ....++|.|+|...++-..+.          .....+++.++.....
T Consensus        86 ~vad~~~~i~~~~~~g~~~~~~-~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~  164 (314)
T d1pjxa_          86 FVADMRLGLLVVQTDGTFEEIA-KKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQM  164 (314)
T ss_dssp             EEEETTTEEEEEETTSCEEECC-SBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCE
T ss_pred             EEEECCCeEEEEeCCCcEEEEE-eccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCce
Confidence            8777777788888765431110 011111    256799999998877632110          1112345555533222


Q ss_pred             EEEecCCccEEEEEEeeCCC----eEEEEecCCCeEEEEeCC-CCcee-----eeccC-cccceEEEEEcCCCCEEEEEe
Q 007283          139 GEFDGHSRRVLSCAFKPSRP----FRIATCGEDFLVNFYEGP-PFKFK-----LSHRG-HSNFVNCVRFSPDGSKFISVS  207 (609)
Q Consensus       139 ~~~~~h~~~v~~~~~~p~~~----~~i~t~~~d~~i~~~~~~-~~~~~-----~~~~~-h~~~v~~l~~s~dg~~l~s~~  207 (609)
                      ..+......-..++|+|++.    .++++-...+.|..++.. .+...     ..+.+ +....-.+++.++|+++++..
T Consensus       165 ~~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~  244 (314)
T d1pjxa_         165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANW  244 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEE
T ss_pred             eEeeCCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEc
Confidence            22323333446789998764    345555666777666532 22211     11222 222345789999999888777


Q ss_pred             CCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCC-eEEEEeCCCcEEEeecc
Q 007283          208 SDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGK-QVLTASADKSAKVWDIS  263 (609)
Q Consensus       208 ~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~-~l~s~s~d~~i~iwd~~  263 (609)
                      ..+.|.+||.+.++.+..+.   .+....++++|.||++ ++++.+..++|...++.
T Consensus       245 ~~g~I~~~dp~~g~~~~~i~---~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         245 GSSHIEVFGPDGGQPKMRIR---CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTTEEEEECTTCBSCSEEEE---CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEEeCCCCEEEEEEE---CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            88999999988777554442   2335688999999987 55677778888887765

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.81  E-value=9.3e-07  Score=82.59  Aligned_cols=69  Identities=17%  Similarity=0.260  Sum_probs=54.5

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          190 FVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       190 ~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .+..++++|||+++++...+++|..++......  .+.   ...+.+.+++|+|||+++++...++.+..|+..
T Consensus        29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~--~~~---~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~   97 (302)
T d2p4oa1          29 FLENLASAPDGTIFVTNHEVGEIVSITPDGNQQ--IHA---TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV   97 (302)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTCCEE--EEE---ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred             CcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEE--EEE---cCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence            477899999999999988899999888654322  221   245678999999999999998888888888754

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.77  E-value=8e-08  Score=88.89  Aligned_cols=95  Identities=19%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             eecCC--CCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe-CC---C--cEEEEcCCCCceeeE
Q 007283           23 SGHPK--SNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD-VS---G--TVRIWGAHNDHVLKK   94 (609)
Q Consensus        23 ~~~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~-~d---~--~i~vWd~~~~~~~~~   94 (609)
                      ..+||  |+.+++...+.+.++|+.+++.. .+..+.+.+...+|||||++||-.. .+   .  .|.+.+..+++.  .
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~--~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--K   81 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--E
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--E
Confidence            45688  99999988788999999887764 4666777899999999999998543 22   2  244455555432  2


Q ss_pred             EEeec-------ccceeEEEECCCCCEEEEEEC
Q 007283           95 EFRVL-------SGRIDDLQWSPDGLRIVACGD  120 (609)
Q Consensus        95 ~~~~~-------~~~v~~~~~spdg~~l~~~~~  120 (609)
                      .++..       .......+|+|||+.|+....
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  114 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDA  114 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECT
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEc
Confidence            23222       123567899999999987654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.75  E-value=2e-06  Score=80.25  Aligned_cols=222  Identities=9%  Similarity=0.034  Sum_probs=133.8

Q ss_pred             EEeecCCCCeEEEeC-CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEee-
Q 007283           21 LISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRV-   98 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~-   98 (609)
                      .++++|||+.++... +++|..++... +. ..+....+.+.+++|+|||+++++...++.+.+|+..........+.. 
T Consensus        32 ~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (302)
T d2p4oa1          32 NLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTL  109 (302)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEEC
T ss_pred             CEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecccc
Confidence            688999999777654 57777777543 33 334556678999999999999999888888888877643322222222 


Q ss_pred             -cccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEE--E-e---------cCCccEEEEEEeeCCCeEEEEec
Q 007283           99 -LSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGE--F-D---------GHSRRVLSCAFKPSRPFRIATCG  165 (609)
Q Consensus        99 -~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~-~---------~h~~~v~~~~~~p~~~~~i~t~~  165 (609)
                       .......+++.++|+.+++-.. ..    ++|.++.......  . .         ........+.++  +...+++..
T Consensus       110 ~~~~~~n~i~~~~~g~~~v~~~~-~~----~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~  182 (302)
T d2p4oa1         110 PDAIFLNGITPLSDTQYLTADSY-RG----AIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT  182 (302)
T ss_dssp             TTCSCEEEEEESSSSEEEEEETT-TT----EEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred             CCccccceeEEccCCCEEeeccc-cc----cceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence             2345788999999976665322 21    2333332211111  1 0         111234555554  445566777


Q ss_pred             CCCeEEEEeCCCCceee--eccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc-ccccCcCCCCccceEEEEE-
Q 007283          166 EDFLVNFYEGPPFKFKL--SHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK-IGELSPEDGHKGSVYAVSW-  241 (609)
Q Consensus       166 ~d~~i~~~~~~~~~~~~--~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~h~~~V~~l~~-  241 (609)
                      ..+.+..++........  ...........++|.++|+++++...++.|..++...... +...   ...-...++++| 
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~---~~~~~~pt~vafg  259 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQA---EQGVIGSTAVAFG  259 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECG---GGTCTTEEEEEEC
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEec---CCCCCCceEEEEc
Confidence            77777766643321111  1111223355789999999888777889999998754321 2111   112345789999 


Q ss_pred             --CCCCCeEEEEeCC
Q 007283          242 --SPDGKQVLTASAD  254 (609)
Q Consensus       242 --spd~~~l~s~s~d  254 (609)
                        +||++.|+.++..
T Consensus       260 ~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         260 QTEGDCTAIYVVTNG  274 (302)
T ss_dssp             CSTTTTTEEEEEECT
T ss_pred             CCCCCCCEEEEECCC
Confidence              6788877665544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.69  E-value=1.2e-05  Score=75.41  Aligned_cols=236  Identities=11%  Similarity=0.064  Sum_probs=141.5

Q ss_pred             cCcee-EEeecCCCCeEEEe-CCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCC--CcEEEEcC--CCC
Q 007283           16 RGRGI-LISGHPKSNSILYT-NGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVS--GTVRIWGA--HND   89 (609)
Q Consensus        16 ~~~~~-~~~~~~~~~~l~~~-~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d--~~i~vWd~--~~~   89 (609)
                      .|..+ .+.++++|+..+.. .+++|.-++..+......+.........++|+|||+++++...+  ...+++..  ...
T Consensus        38 ~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          38 KGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             SCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            44433 66788999844433 35688888877665444444445567899999999988875433  33344433  333


Q ss_pred             ceeeEEEeec--ccceeEEEECCCCCEEEEEECCC-CcceEEEEEcCC-CCeeEEEecCCccEEEEEEeeCCCeEEEEec
Q 007283           90 HVLKKEFRVL--SGRIDDLQWSPDGLRIVACGDGK-GKSLVRAFMWDS-GTNVGEFDGHSRRVLSCAFKPSRPFRIATCG  165 (609)
Q Consensus        90 ~~~~~~~~~~--~~~v~~~~~spdg~~l~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~  165 (609)
                      .. .......  ......+++.|+|...++-..+. ......++.++. +..+..+...-.....++|+|++..++++-.
T Consensus       118 ~~-~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NL-QDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SC-EEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             ee-eeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecc
Confidence            22 2212111  23467899999998666532211 111223444443 2233333333334577999999987667767


Q ss_pred             CCCeEEEEeCCC-Cceeee-------ccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcC---CCCcc
Q 007283          166 EDFLVNFYEGPP-FKFKLS-------HRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPE---DGHKG  234 (609)
Q Consensus       166 ~d~~i~~~~~~~-~~~~~~-------~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~---~~h~~  234 (609)
                      ..+.|..|+... +.....       .......--.+++.++|+++++....+.|.++|. .++.+..+...   .++..
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~~  275 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHML  275 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSC
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcCc
Confidence            777888886432 111110       1111122457899999998888888999999996 56666544211   13445


Q ss_pred             ceEEEEECCCCCeEEEEeC
Q 007283          235 SVYAVSWSPDGKQVLTASA  253 (609)
Q Consensus       235 ~V~~l~~spd~~~l~s~s~  253 (609)
                      .+++++|.|++..++..+.
T Consensus       276 ~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         276 RSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             BCCEEEECTTSCEEEEEEE
T ss_pred             eeeeEEEeCCCCEEEEEcC
Confidence            6889999998877766554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.64  E-value=5.8e-05  Score=69.01  Aligned_cols=155  Identities=12%  Similarity=0.142  Sum_probs=103.4

Q ss_pred             eeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEEEEEeCCCeEEEEEccCCceEEee
Q 007283          450 VTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMFASGDVNREAIVWDRVSREVKLKN  529 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l~s~s~d~~v~iwd~~~~~~~~~~  529 (609)
                      ...+++.++|+++++....+.+.+++.... +....-...+......+++.+++..+++....+.|++||........-.
T Consensus       116 p~~~avd~~G~i~v~~~~~~~~~~~~~~g~-~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g  194 (279)
T d1q7fa_         116 PRGVTVDNKGRIIVVECKVMRVIIFDQNGN-VLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG  194 (279)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTTSC-EEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEES
T ss_pred             cceeccccCCcEEEEeeccceeeEeccCCc-eeecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeec
Confidence            456778888888887777777887775433 2222223456677889999999999999999999999996543221111


Q ss_pred             ecCCCCceEEEEECCCCcEEEEEeC-CCeEEEEEcCCCCCcceeEe-ccccCCeEEEEEcCCCeEEEEeCCCcEEEEEcc
Q 007283          530 MLYHTARINCLAWSPNNSMVATGSL-DTCVIIYEIDKPASSRMTIK-GAHLGGVYGLAFTDEHSVVSSGEDACVRVWRLT  607 (609)
Q Consensus       530 ~~~h~~~i~~l~~s~d~~~l~s~s~-D~~v~vw~~~~~~~~~~~~~-~~h~~~v~~~~~s~~~~l~s~s~D~~i~~W~~~  607 (609)
                      ..+.......+++.|+|+.+++-.. +..|.+|+.+  +..+..+. ......-+.|++.++..|+.+..+++|++|+..
T Consensus       195 ~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~--G~~~~~~~~~~~~~~p~~vav~~dG~l~V~~~n~~v~~fr~~  272 (279)
T d1q7fa_         195 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD--GQLISALESKVKHAQCFDVALMDDGSVVLASKDYRLYIYRYV  272 (279)
T ss_dssp             CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT--SCEEEEEEESSCCSCEEEEEEETTTEEEEEETTTEEEEEECS
T ss_pred             ccccccCCcccccccCCeEEEEECCCCcEEEEECCC--CCEEEEEeCCCCCCCEeEEEEeCCCcEEEEeCCCeEEEEEee
Confidence            1234456789999999998877554 4568898743  21111221 222345688999854455556679999999864

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.57  E-value=9.6e-05  Score=67.47  Aligned_cols=239  Identities=11%  Similarity=0.128  Sum_probs=145.5

Q ss_pred             cEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec------ccceeEEEECCCCCEEEEEECCCCcceEEEEEcC
Q 007283           60 ATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL------SGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWD  133 (609)
Q Consensus        60 v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~------~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  133 (609)
                      -..++++|+|+++++-.....|++||.+. +.+ ..+...      ......+++.++....+.+.+....   ++..++
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~G-~~~-~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~---~i~~~~   99 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKEG-RFK-FQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTH---QIQIYN   99 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTTS-CEE-EEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGC---EEEEEC
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCCC-CEE-EEecccCCCcccccccccccccccccccceeccCCcc---cccccc
Confidence            46789999999888877788899998653 322 233221      1123455665654444443332222   233333


Q ss_pred             C-CCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeec--cCcccceEEEEEcCCCCEEEEEeCC
Q 007283          134 S-GTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSH--RGHSNFVNCVRFSPDGSKFISVSSD  209 (609)
Q Consensus       134 ~-~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~--~~h~~~v~~l~~s~dg~~l~s~~~d  209 (609)
                      . +.....+. ........+++.+++.. +++....+.+.+++.. ++....+  ..+......+++.++|+.+++....
T Consensus       100 ~~g~~~~~~~~~~~~~p~~~avd~~G~i-~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~  177 (279)
T d1q7fa_         100 QYGQFVRKFGATILQHPRGVTVDNKGRI-IVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRA  177 (279)
T ss_dssp             TTSCEEEEECTTTCSCEEEEEECTTSCE-EEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGG
T ss_pred             ccccceeecCCCcccccceeccccCCcE-EEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccc
Confidence            2 33344443 33455778899988874 4454555666676643 3333332  4466778889999999988888888


Q ss_pred             CcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeC-CCcEEEeecccCCCCceEEEeccCCCCCccceEEE
Q 007283          210 KKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASA-DKSAKVWDISEDNHGKLKKTLTPSGSGGVDDMLVG  288 (609)
Q Consensus       210 ~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (609)
                      +.|.+|+.. ++.+..+. ..++......+++.|+|+.+++-+. ++.|.+|+.+    ++...++......  ....--
T Consensus       178 ~~V~~~d~~-G~~~~~~g-~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~----G~~~~~~~~~~~~--~~p~~v  249 (279)
T d1q7fa_         178 HCVKVFNYE-GQYLRQIG-GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD----GQLISALESKVKH--AQCFDV  249 (279)
T ss_dssp             TEEEEEETT-CCEEEEES-CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT----SCEEEEEEESSCC--SCEEEE
T ss_pred             cceeeeecC-Cceeeeec-ccccccCCcccccccCCeEEEEECCCCcEEEEECCC----CCEEEEEeCCCCC--CCEeEE
Confidence            999999864 45454442 1244455788999999998877654 4569999854    5565555322211  111111


Q ss_pred             EEEcCCeEEEEEcCCcEEEEeCCCC
Q 007283          289 CLWQNDFLVIVSLGGTISIFSANDL  313 (609)
Q Consensus       289 ~~~~~~~~~~~~~~g~i~~~~~~~~  313 (609)
                      +...+..++++..+..|++|.....
T Consensus       250 av~~dG~l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         250 ALMDDGSVVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             EEETTTEEEEEETTTEEEEEECSCC
T ss_pred             EEeCCCcEEEEeCCCeEEEEEeeee
Confidence            2233446777788888999987654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=4.5e-05  Score=75.29  Aligned_cols=243  Identities=12%  Similarity=0.084  Sum_probs=125.6

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccc-cCCCC-----------------cEEEEECCCCCEEEEEeCC-CcE
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYG-EHAYP-----------------ATVARFSPNGEWIASADVS-GTV   81 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~-~h~~~-----------------v~~~~~sp~g~~las~~~d-~~i   81 (609)
                      ...++|||+.|+|..++.+.+.+..++...+... +-.+.                 -..+.|||||++||....| ..|
T Consensus       118 ~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V  197 (465)
T d1xfda1         118 YAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRV  197 (465)
T ss_dssp             BCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTS
T ss_pred             eeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEeccccc
Confidence            5779999999999999899999887665543321 21111                 2467799999999976532 223


Q ss_pred             E---------------------------------EEcCCCCceeeEEEee-----cccceeEEEECCCCCEEEEEEC-CC
Q 007283           82 R---------------------------------IWGAHNDHVLKKEFRV-----LSGRIDDLQWSPDGLRIVACGD-GK  122 (609)
Q Consensus        82 ~---------------------------------vWd~~~~~~~~~~~~~-----~~~~v~~~~~spdg~~l~~~~~-~~  122 (609)
                      .                                 |+|+.++.........     ...-+..+.|+||++.++...+ +.
T Consensus       198 ~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q  277 (465)
T d1xfda1         198 PIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQ  277 (465)
T ss_dssp             CEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTS
T ss_pred             ceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEcccc
Confidence            2                                 3333322211000000     0112467899999976655443 22


Q ss_pred             CcceEEEEEcCCCCeeEEEecCC-ccE----EEEEEeeCCCeEE-EE----ecCCCeEEEEe--C---CCCceeeeccCc
Q 007283          123 GKSLVRAFMWDSGTNVGEFDGHS-RRV----LSCAFKPSRPFRI-AT----CGEDFLVNFYE--G---PPFKFKLSHRGH  187 (609)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~h~-~~v----~~~~~~p~~~~~i-~t----~~~d~~i~~~~--~---~~~~~~~~~~~h  187 (609)
                      ....+.+.+..++.....+..+. ..|    ....|+|++...+ +.    .+.++...+.-  .   ..++....+...
T Consensus       278 ~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G  357 (465)
T d1xfda1         278 NVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG  357 (465)
T ss_dssp             CEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS
T ss_pred             ccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccC
Confidence            22234444555555443333221 111    2346788887432 21    34444433331  1   112222222222


Q ss_pred             ccceEE-EEEcCCCCEEE-EEeCCC--cEEEE--eCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC---CcEE
Q 007283          188 SNFVNC-VRFSPDGSKFI-SVSSDK--KGIIY--DGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD---KSAK  258 (609)
Q Consensus       188 ~~~v~~-l~~s~dg~~l~-s~~~d~--~i~iw--d~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d---~~i~  258 (609)
                      .-.|.. +.|+++++.+. +|..++  .-.+|  +.........+...........++.|||++++++.....   ..+.
T Consensus       358 ~w~V~~i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s~~~~P~~~  437 (465)
T d1xfda1         358 DWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVT  437 (465)
T ss_dssp             SSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEE
T ss_pred             CceEEEEEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEeecCCCCeEE
Confidence            233444 46888887654 444332  22344  333332222222222344567899999999998855433   4556


Q ss_pred             Eeecc
Q 007283          259 VWDIS  263 (609)
Q Consensus       259 iwd~~  263 (609)
                      +++..
T Consensus       438 ~~~~~  442 (465)
T d1xfda1         438 VHNTT  442 (465)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            66543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.2e-05  Score=77.63  Aligned_cols=100  Identities=10%  Similarity=0.118  Sum_probs=67.4

Q ss_pred             eEEeecCCCCeEEEeCCCEEEEEeCCCCccccccccC---CCCcEEEEECCCCCEEEEEe---------CCCcEEEEcCC
Q 007283           20 ILISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEH---AYPATVARFSPNGEWIASAD---------VSGTVRIWGAH   87 (609)
Q Consensus        20 ~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h---~~~v~~~~~sp~g~~las~~---------~d~~i~vWd~~   87 (609)
                      ..+...+++.++....++.+.+++..+++....+..+   ...+....|||||++|+-+.         ..+.+-|+|+.
T Consensus        20 ~~~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          20 PEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CCCEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            3456778776554344567899999877654333322   23577788999999987653         34677888988


Q ss_pred             CCceeeEEEee---cccceeEEEECCCCCEEEEEECC
Q 007283           88 NDHVLKKEFRV---LSGRIDDLQWSPDGLRIVACGDG  121 (609)
Q Consensus        88 ~~~~~~~~~~~---~~~~v~~~~~spdg~~l~~~~~~  121 (609)
                      ++...  .+..   ....+....|||||++++.+.++
T Consensus       100 ~~~~~--~l~~~~~~~~~l~~~~wSPDG~~iafv~~~  134 (465)
T d1xfda1         100 HGDPQ--SLDPPEVSNAKLQYAGWGPKGQQLIFIFEN  134 (465)
T ss_dssp             SCCCE--ECCCTTCCSCCCSBCCBCSSTTCEEEEETT
T ss_pred             CCcee--eccCccCCccccceeeeccCCceEEEEecc
Confidence            76532  2221   23356678999999999988764

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.37  E-value=7.8e-05  Score=67.27  Aligned_cols=192  Identities=10%  Similarity=-0.051  Sum_probs=114.7

Q ss_pred             CceeEEeecCCCCeEEEeCCC-EEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEE
Q 007283           17 GRGILISGHPKSNSILYTNGR-SVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKE   95 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~   95 (609)
                      ..|..++++++|+.++...++ .+.+++..+........+ ......+++.++|++.++-..+..+...+..........
T Consensus        57 ~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~  135 (260)
T d1rwia_          57 YQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  135 (260)
T ss_dssp             CSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECC
T ss_pred             cCceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeee
Confidence            356678888999876665544 444555444444332222 245789999999998887666667777776543321111


Q ss_pred             EeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCC-CeeEEE-ecCCccEEEEEEeeCCCeEEEEecCCCeEEEE
Q 007283           96 FRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSG-TNVGEF-DGHSRRVLSCAFKPSRPFRIATCGEDFLVNFY  173 (609)
Q Consensus        96 ~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~  173 (609)
                      . .-......++++|+|..+++...+.     ++..++.. .....+ .........+++.+++. ++++....+.+..+
T Consensus       136 ~-~~~~~p~~i~~~~~g~~~v~~~~~~-----~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~~~~i~~~  208 (260)
T d1rwia_         136 F-TGLNDPDGVAVDNSGNVYVTDTDNN-----RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKL  208 (260)
T ss_dssp             C-CSCCSCCEEEECTTCCEEEEEGGGT-----EEEEECTTTCCEEECCCSSCCSEEEEEECTTCC-EEEEETTTTEEEEE
T ss_pred             e-cccCCcceeeecCCCCEeeeccccc-----cccccccccceeeeeeccccCCCccceeeeeee-eeeeecCCCEEEEE
Confidence            1 1123467899999998666543221     23334432 222222 24445678899999986 46777777777766


Q ss_pred             eCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEe
Q 007283          174 EGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYD  216 (609)
Q Consensus       174 ~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd  216 (609)
                      +...................|+++++|.++++-..+++|+..+
T Consensus       209 ~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         209 LAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred             eCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence            6443322222223334568899999998777655666666554

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.31  E-value=0.00064  Score=63.12  Aligned_cols=208  Identities=11%  Similarity=0.025  Sum_probs=120.9

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCC-CCe
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDS-GTN  137 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~-~~~  137 (609)
                      ....++|.++|++.++-...+.|.-|+.++++.. ..+.........++|+|||+.+++...+.. ....+...+. +..
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~-~~~~~~~~~p~gla~~~dG~l~va~~~~~~-~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIK-RPFVSHKANPAAIKIHKDGRLFVCYLGDFK-STGGIFAATENGDN  118 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEE-EEEECSSSSEEEEEECTTSCEEEEECTTSS-SCCEEEEECTTSCS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEE-EEEeCCCCCeeEEEECCCCCEEEEecCCCc-cceeEEEEcCCCce
Confidence            3568999999998777778889988987765432 223344556789999999987776432211 1122333332 222


Q ss_pred             eEEEecC---CccEEEEEEeeCCCeEEEEecCC------CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEE-EEEe
Q 007283          138 VGEFDGH---SRRVLSCAFKPSRPFRIATCGED------FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKF-ISVS  207 (609)
Q Consensus       138 ~~~~~~h---~~~v~~~~~~p~~~~~i~t~~~d------~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l-~s~~  207 (609)
                      +..+..+   ......+++.|+|.+ .++-...      +.+...+...... ..........+.++|+||++.| ++-+
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l-~vtd~~~~~~~~~g~v~~~~~dg~~~-~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGF-YFTDFRGYSTNPLGGVYYVSPDFRTV-TPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCE-EEEECCCBTTBCCEEEEEECTTSCCE-EEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeccCCCcccCCcceeEEeccce-eecccccccccCcceeEEEeccccee-EEEeeccceeeeeeeccccceEEEecc
Confidence            2222222   235778899999974 4432211      1233333322221 1111222345779999999865 4445


Q ss_pred             CCCcEEEEeCCCCc-cccccC----cCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecccCCCCceEEEe
Q 007283          208 SDKKGIIYDGKTAD-KIGELS----PEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDISEDNHGKLKKTL  274 (609)
Q Consensus       208 ~d~~i~iwd~~~~~-~~~~~~----~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~  274 (609)
                      ..+.|..|+..... ......    ........-..+++.++|++.++....+.|..++..    ++.+..+
T Consensus       197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~----G~~l~~i  264 (319)
T d2dg1a1         197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR----GYPIGQI  264 (319)
T ss_dssp             GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT----SCEEEEE
T ss_pred             cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC----CcEEEEE
Confidence            67888888764321 111100    000111224578999999988888888999999864    4454444

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.27  E-value=0.00028  Score=65.45  Aligned_cols=199  Identities=8%  Similarity=0.072  Sum_probs=115.8

Q ss_pred             cCceeEEeecCCCCeEEEeC-CCEEEEEeCCCCccccccc---cCC-CCcEEEEECCCCCEEEEEeC-------------
Q 007283           16 RGRGILISGHPKSNSILYTN-GRSVIILDLSNPLQVSIYG---EHA-YPATVARFSPNGEWIASADV-------------   77 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~-~~~~~i~~~~~~~~~~~~~---~h~-~~v~~~~~sp~g~~las~~~-------------   77 (609)
                      .|.|..+.++|+|+.|+... ...+..++...........   +.+ ...+.++|.|+|++.+|-..             
T Consensus        70 ~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~  149 (314)
T d1pjxa_          70 GGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQ  149 (314)
T ss_dssp             ECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTS
T ss_pred             CCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceec
Confidence            46688899999998765553 4678888876554332211   211 12577999999998887432             


Q ss_pred             CCcEEEEcCCCCceeeEEEeecccceeEEEECCCCC----EEEEEECCCCcceEEEEEcCCCCeeE------EEec-CCc
Q 007283           78 SGTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGL----RIVACGDGKGKSLVRAFMWDSGTNVG------EFDG-HSR  146 (609)
Q Consensus        78 d~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~----~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~-h~~  146 (609)
                      ...=+||.+........ +...-.....++|+||+.    +|..+ +.... .+..++++....+.      .+.+ +..
T Consensus       150 ~~~G~v~~~~~dg~~~~-~~~~~~~pNGi~~~~d~d~~~~~lyv~-d~~~~-~i~~~d~~~~g~~~~~~~~~~~~~~~~~  226 (314)
T d1pjxa_         150 EKFGSIYCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVA-ETPTK-KLWSYDIKGPAKIENKKVWGHIPGTHEG  226 (314)
T ss_dssp             SSCEEEEEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEE-ETTTT-EEEEEEEEETTEEEEEEEEEECCCCSSC
T ss_pred             cCCceEEEEeecCceeE-eeCCcceeeeeEECCCCCcceeEEEEE-eeccc-ceEEeeccCccccceeeEEEEccccccc
Confidence            11224554432221111 111122346789999764    44443 33322 22233333332221      1222 122


Q ss_pred             cEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCceeeeccCcccceEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q 007283          147 RVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGS-KFISVSSDKKGIIYDGK  218 (609)
Q Consensus       147 ~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-~l~s~~~d~~i~iwd~~  218 (609)
                      ....+++.++|.. +++....+.|..++.+.++............++++|.||++ ++++.+.++.|...+..
T Consensus       227 ~pdGiavD~~Gnl-yVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         227 GADGMDFDEDNNL-LVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEEEBTTCCE-EEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             cceeeEEecCCcE-EEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            3557899999874 55555567788888766655544444456788999999997 55666777888877754

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.17  E-value=0.00073  Score=61.83  Aligned_cols=221  Identities=11%  Similarity=0.051  Sum_probs=138.2

Q ss_pred             eecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec-
Q 007283           23 SGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL-   99 (609)
Q Consensus        23 ~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~-   99 (609)
                      ..+++.+.|.+..  ++.|.-||..+++... +. ....+.++++.++|+++++. .+ -+.++|..+++......... 
T Consensus        24 ~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~~-~~~~~~~i~~~~dg~l~va~-~~-gl~~~d~~tg~~~~l~~~~~~   99 (295)
T d2ghsa1          24 TFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESD   99 (295)
T ss_dssp             EEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTT
T ss_pred             eEECCCCEEEEEECCCCEEEEEECCCCeEEE-EE-CCCCcEEEEEecCCCEEEEE-eC-ccEEeecccceeeEEeeeecC
Confidence            3566667777763  5788889988766532 32 23468899999999998865 34 58889988776322111111 


Q ss_pred             --ccceeEEEECCCCCEEEEEECCC-CcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCC
Q 007283          100 --SGRIDDLQWSPDGLRIVACGDGK-GKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGP  176 (609)
Q Consensus       100 --~~~v~~~~~spdg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~  176 (609)
                        ...+..+.+.|+|...++..... ......++..+.++....+ .....-..++|+|++...+++-+..+.|..++..
T Consensus       100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~-~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEe-eccCCcceeeecCCCceEEEeecccceeeEeeec
Confidence              12478899999998777654321 1112334444444332222 2223456789999998777777777777777642


Q ss_pred             C--C------ceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccceEEEEEC-CCCCe
Q 007283          177 P--F------KFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWS-PDGKQ  247 (609)
Q Consensus       177 ~--~------~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~s-pd~~~  247 (609)
                      .  .      .....+.+.....-.+++..+|++.++.-..+.|..||. .++.+..+..   ....+++++|- ||.+.
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~l---P~~~~T~~~FGG~d~~~  254 (295)
T d2ghsa1         179 ARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV---PGKQTTCPAFIGPDASR  254 (295)
T ss_dssp             TTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC---SCSBEEEEEEESTTSCE
T ss_pred             ccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecC---CCCceEEEEEeCCCCCE
Confidence            2  1      111122334455678899999997776667788999996 4666665532   23468999995 66554


Q ss_pred             E-EEEe
Q 007283          248 V-LTAS  252 (609)
Q Consensus       248 l-~s~s  252 (609)
                      | +|.+
T Consensus       255 LyvTta  260 (295)
T d2ghsa1         255 LLVTSA  260 (295)
T ss_dssp             EEEEEB
T ss_pred             EEEEEC
Confidence            4 4433

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.55  E-value=0.0029  Score=56.83  Aligned_cols=195  Identities=13%  Similarity=-0.007  Sum_probs=98.8

Q ss_pred             CceeEEeecCCCCeEEEeC---C----CEEEEEeCCCCccccccc------cCCCCcEEEEECCCCCEEEEEeCC-----
Q 007283           17 GRGILISGHPKSNSILYTN---G----RSVIILDLSNPLQVSIYG------EHAYPATVARFSPNGEWIASADVS-----   78 (609)
Q Consensus        17 ~~~~~~~~~~~~~~l~~~~---~----~~~~i~~~~~~~~~~~~~------~h~~~v~~~~~sp~g~~las~~~d-----   78 (609)
                      +......++|||+.|+|..   +    ..+.++++.++.......      ........++|+|||+.|+.....     
T Consensus        41 ~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  120 (281)
T d1k32a2          41 GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSS  120 (281)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTT
T ss_pred             CcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEEccCCCcc
Confidence            4556788999999999862   2    247788887776544211      122346788999999999865332     


Q ss_pred             -CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCCcce---------EEEEEcCCCCeeEEEecCCccE
Q 007283           79 -GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSL---------VRAFMWDSGTNVGEFDGHSRRV  148 (609)
Q Consensus        79 -~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~h~~~v  148 (609)
                       ..+.+.+...+..     +..........|.+++..++..........         ........ ........+....
T Consensus       121 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  194 (281)
T d1k32a2         121 MTCLYRVENDGINF-----VPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNS-GAFKKIVDMSTHV  194 (281)
T ss_dssp             CCEEEEEEGGGTEE-----EECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEET-TEEEEEECCSSCC
T ss_pred             ceeeeeecCCCcee-----EEecCCccceeeecCCCeEEEeeccccceeeeeccCCcceeeeeccc-cceeeccCCcccc
Confidence             1233444433321     111122233455666666655432211100         00000000 1111112222233


Q ss_pred             EEEEEeeCCCeEEEEecCC--CeEEEEeCCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcc
Q 007283          149 LSCAFKPSRPFRIATCGED--FLVNFYEGPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADK  222 (609)
Q Consensus       149 ~~~~~~p~~~~~i~t~~~d--~~i~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~  222 (609)
                      ....+.++  .++.....+  ..+.+++....+...........+  ..|+|||+.|+.. .++.+.++|..+++.
T Consensus       195 ~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~~~~~~--~~~SpDG~~I~f~-~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         195 SSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYP--RHLNTDGRRILFS-KGGSIYIFNPDTEKI  265 (281)
T ss_dssp             EEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCE--EEEEESSSCEEEE-ETTEEEEECTTTCCE
T ss_pred             ceeeeecc--ccceecccccccceEEEeCCCCceEEeecCCCccc--ccCcCCCCEEEEE-eCCEEEEEECCCCCE
Confidence            33344443  223333333  345555665544433222222233  4689999988764 467899999877663

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.14  Score=45.07  Aligned_cols=206  Identities=7%  Similarity=-0.091  Sum_probs=120.3

Q ss_pred             ceeEEeecCCCCeEEEeC--CCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEE-eCCCcEEEEcCCCCceeeE
Q 007283           18 RGILISGHPKSNSILYTN--GRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASA-DVSGTVRIWGAHNDHVLKK   94 (609)
Q Consensus        18 ~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~-~~d~~i~vWd~~~~~~~~~   94 (609)
                      ....+++++..+.|.+..  .+.|...++...........--..+..+++..-++.|.-+ ...+.|.+.+...... ..
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~-~~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RV  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceE-EE
Confidence            455788999999888863  4788888887665554443333568899998877777644 4567899998875432 22


Q ss_pred             EEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecCCCeEEEEe
Q 007283           95 EFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYE  174 (609)
Q Consensus        95 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~  174 (609)
                      .....-.....+++.|...+|.-...+.....+.-...+...........-.....+++.+.+..+..+-...+.|...+
T Consensus       116 l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~  195 (263)
T d1npea_         116 LFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (263)
T ss_dssp             EECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEE
Confidence            22222356789999998777775543332211211122322222222233345678999888775445545566777766


Q ss_pred             CCCCceeeeccCcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcccccc
Q 007283          175 GPPFKFKLSHRGHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGEL  226 (609)
Q Consensus       175 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~  226 (609)
                      ...........+-.. ...|++. ++....+=...+.|...|..+++.+..+
T Consensus       196 ~~g~~~~~v~~~~~~-P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         196 PAQPGRRKVLEGLQY-PFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             TTEEEEEEEEECCCS-EEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCCCeEEEECCCCC-cEEEEEE-CCEEEEEECCCCEEEEEECCCCccceEE
Confidence            543333222333222 3456664 2333344445567777777776655444

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.84  E-value=0.17  Score=47.19  Aligned_cols=71  Identities=18%  Similarity=0.140  Sum_probs=44.1

Q ss_pred             EEEcCCCCEEEEEeCCC-----------cEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCC-CcEEEee
Q 007283          194 VRFSPDGSKFISVSSDK-----------KGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASAD-KSAKVWD  261 (609)
Q Consensus       194 l~~s~dg~~l~s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d-~~i~iwd  261 (609)
                      .....+|+.++.|+.+.           .+.+||+.++...........|........+.+++++++.|+.+ ..+.+||
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd  104 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYD  104 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEec
Confidence            33455677777766421           26789988775432111111233334466788999999988765 6899999


Q ss_pred             ccc
Q 007283          262 ISE  264 (609)
Q Consensus       262 ~~~  264 (609)
                      ...
T Consensus       105 ~~~  107 (387)
T d1k3ia3         105 SSS  107 (387)
T ss_dssp             GGG
T ss_pred             Ccc
Confidence            864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.28  E-value=0.35  Score=43.11  Aligned_cols=142  Identities=13%  Similarity=0.071  Sum_probs=89.5

Q ss_pred             eeEEEEcCCCCEEEEEeCC----CcEEEEEecCCeeeeeEEEecCCCceEEEEECCCCCEE-EEEeCCCeEEEEEccCCc
Q 007283          450 VTASAIAPDGSEAIIGSQD----GKLRVYSIRGDTLTEEAVLEKHRGAVSVIRYSPDVSMF-ASGDVNREAIVWDRVSRE  524 (609)
Q Consensus       450 ~~~~~~sp~g~~l~~gs~d----g~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~s~~~~~l-~s~s~d~~v~iwd~~~~~  524 (609)
                      ++.+.+.|+|++.++...+    +.-.+|.+..+...  .... .....+.++|++++..+ ++.+..+.|+.+++....
T Consensus       105 ~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~--~~~~-~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~  181 (295)
T d2ghsa1         105 SNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVT--KLFA-DISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDART  181 (295)
T ss_dssp             EEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEE--EEEE-EESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTT
T ss_pred             ceeeEECCCCCEEEEeccccccccceeEeeecCCcEE--EEee-ccCCcceeeecCCCceEEEeecccceeeEeeecccc
Confidence            5677889999977765432    34567777666543  2222 23356789999999855 555667888888764221


Q ss_pred             ------e-EEeeecCCCCceEEEEECCCCcEEEEEeCCCeEEEEEcCCCCCcceeEeccccCCeEEEEEc--CCC-eEEE
Q 007283          525 ------V-KLKNMLYHTARINCLAWSPNNSMVATGSLDTCVIIYEIDKPASSRMTIKGAHLGGVYGLAFT--DEH-SVVS  594 (609)
Q Consensus       525 ------~-~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D~~v~vw~~~~~~~~~~~~~~~h~~~v~~~~~s--~~~-~l~s  594 (609)
                            . .......-....-.+++.++|++.++.-..+.|..|+-+ ++  .+....-....+++++|-  +.+ ++||
T Consensus       182 ~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~-G~--~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         182 GLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GN--HIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             CCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CC--EEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             cccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC-Cc--EeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence                  1 111122334557889999999988877778889999854 22  222222234578999996  433 4566


Q ss_pred             EeC
Q 007283          595 SGE  597 (609)
Q Consensus       595 ~s~  597 (609)
                      ++.
T Consensus       259 ta~  261 (295)
T d2ghsa1         259 SAR  261 (295)
T ss_dssp             EBC
T ss_pred             ECC
Confidence            554

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.20  E-value=0.35  Score=42.26  Aligned_cols=237  Identities=12%  Similarity=0.007  Sum_probs=130.7

Q ss_pred             CCeEEEeCCCEEEEEeCCCCcccc-----ccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCCCceeeEEEeeccc
Q 007283           28 SNSILYTNGRSVIILDLSNPLQVS-----IYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHNDHVLKKEFRVLSG  101 (609)
Q Consensus        28 ~~~l~~~~~~~~~i~~~~~~~~~~-----~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~~~~~~~~~~~~~~  101 (609)
                      |.+|++..++.|.-.++.......     .+..+...+..++|.+..+.|.-++ .++.|+.-++..... ...+.....
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~~   79 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG   79 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEeccc
Confidence            456777777777766765433221     1233344578899999888877654 567788877765432 122222234


Q ss_pred             ceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEecC--CCeEEEEeCCCCc
Q 007283          102 RIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATCGE--DFLVNFYEGPPFK  179 (609)
Q Consensus       102 ~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~~~--d~~i~~~~~~~~~  179 (609)
                      .+..+++..-+..|..+....  ..+.....+.......+.........++++|...+++.+-..  ...|.-.+.....
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~--~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~  157 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQL--DRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN  157 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTT--TEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC
T ss_pred             cccEEEEeccCCeEEEeccCC--CEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCC
Confidence            678899987676776554322  234455555443322333444678899999988876655322  2233322322111


Q ss_pred             eeeeccCcccceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEE
Q 007283          180 FKLSHRGHSNFVNCVRFSPDGSKFISV-SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAK  258 (609)
Q Consensus       180 ~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~  258 (609)
                      ..............+++.+.++.|.-+ ...+.|...+.........+. ...|   -.+|++. ++.+..+-...+.|.
T Consensus       158 ~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~-~~~~---P~~lav~-~~~lYwtd~~~~~I~  232 (263)
T d1npea_         158 RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLE-GLQY---PFAVTSY-GKNLYYTDWKTNSVI  232 (263)
T ss_dssp             CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEE-CCCS---EEEEEEE-TTEEEEEETTTTEEE
T ss_pred             ceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEEC-CCCC---cEEEEEE-CCEEEEEECCCCEEE
Confidence            111122233456789998887766555 456778777775543321121 1122   2466664 333444545567777


Q ss_pred             EeecccCCCCceEEEec
Q 007283          259 VWDISEDNHGKLKKTLT  275 (609)
Q Consensus       259 iwd~~~~~~~~~~~~~~  275 (609)
                      ..|..   .++....+.
T Consensus       233 ~~~~~---~g~~~~~~~  246 (263)
T d1npea_         233 AMDLA---ISKEMDTFH  246 (263)
T ss_dssp             EEETT---TTEEEEEEC
T ss_pred             EEECC---CCccceEEC
Confidence            77764   344444443

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.53  Score=41.12  Aligned_cols=229  Identities=10%  Similarity=-0.034  Sum_probs=129.6

Q ss_pred             eEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCCCc---eeeEEEeecccceeE
Q 007283           30 SILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHNDH---VLKKEFRVLSGRIDD  105 (609)
Q Consensus        30 ~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~~~---~~~~~~~~~~~~v~~  105 (609)
                      .|++.++..|.-.++.+....... .....+..++|++.++.|.-++ .++.|+--++....   ............+..
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~-~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~g   81 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG   81 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred             EEEEECCCeEEEEECCCCcceeee-CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcce
Confidence            577888888888898766544333 3455688999999888887655 45666655554311   111112222345678


Q ss_pred             EEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEeeCCCeEEEEe-cCCCeEEEEeCCCCceeeec
Q 007283          106 LQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKPSRPFRIATC-GEDFLVNFYEGPPFKFKLSH  184 (609)
Q Consensus       106 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~i~t~-~~d~~i~~~~~~~~~~~~~~  184 (609)
                      +++.+.+..|..+..+.  ..+.+...+.......+.........++++|.....+.+- +....|.-.+..-.......
T Consensus        82 lAvD~~~~~lY~~d~~~--~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~  159 (266)
T d1ijqa1          82 LAVDWIHSNIYWTDSVL--GTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLV  159 (266)
T ss_dssp             EEEETTTTEEEEEETTT--TEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEE
T ss_pred             EEEeeccceEEEEecCC--CEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccc
Confidence            99988777777654333  2456666665554444555566788999999776655553 34444544443222222222


Q ss_pred             cCcccceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEeCCCcEEEeecc
Q 007283          185 RGHSNFVNCVRFSPDGSKFISV-SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTASADKSAKVWDIS  263 (609)
Q Consensus       185 ~~h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s~d~~i~iwd~~  263 (609)
                      .......+.+++.+.++.|.-+ ...+.|...+........... .......-.++++. .+....+-..++.|.-.+..
T Consensus       160 ~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~-~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         160 TENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILE-DEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             CSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEE-CTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             ccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEe-CCCcccccEEEEEE-CCEEEEEECCCCeEEEEECC
Confidence            2334556889999887766555 445677777765433221111 11112234566665 23344444456666666643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.56  E-value=0.19  Score=46.64  Aligned_cols=196  Identities=13%  Similarity=0.095  Sum_probs=114.1

Q ss_pred             EEee---cCCCCeEEEeC--CCEEEEEeCCCCccccccc-cCCCCcEEEEEC--CCCCEEEEEeCCC-------------
Q 007283           21 LISG---HPKSNSILYTN--GRSVIILDLSNPLQVSIYG-EHAYPATVARFS--PNGEWIASADVSG-------------   79 (609)
Q Consensus        21 ~~~~---~~~~~~l~~~~--~~~~~i~~~~~~~~~~~~~-~h~~~v~~~~~s--p~g~~las~~~d~-------------   79 (609)
                      ++++   .+||++|+..+  ..+|.+-|+.+-+...+.. .-...+-.++..  |+-.|++.++.+.             
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            4554   44888876653  3688888887766433222 112234445554  5667887755422             


Q ss_pred             -----cEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCC------------cceEEEEEcCC-------C
Q 007283           80 -----TVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKG------------KSLVRAFMWDS-------G  135 (609)
Q Consensus        80 -----~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~------------~~~~~~~~~~~-------~  135 (609)
                           ++-+.|.++.++. .+.. ..+....+.++|||+++++.+.+.+            ...+.+..|..       +
T Consensus       169 ~~y~~~~t~ID~~tm~V~-~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVA-WQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             G-EEEEEEEEETTTTEEE-EEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhcceEEEEEecCCceEE-EEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                 3556777765532 2222 2345778999999999998764321            22244555531       0


Q ss_pred             -----CeeEEEecC-------------CccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCCcee-----------eeccC
Q 007283          136 -----TNVGEFDGH-------------SRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPFKFK-----------LSHRG  186 (609)
Q Consensus       136 -----~~~~~~~~h-------------~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~~~~-----------~~~~~  186 (609)
                           .....+.+.             ......+.++|||.++++++.-+.++.+.|.+.....           ..-..
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             CcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                 001112111             0112357889999999999999999999986532111           01111


Q ss_pred             cccceEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 007283          187 HSNFVNCVRFSPDGSKFISVSSDKKGIIYDGK  218 (609)
Q Consensus       187 h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~  218 (609)
                      ..-.-.+-+|..+|.-..|---|..+.-|++.
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            11223466898888655566679999999864

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.33  E-value=0.8  Score=39.97  Aligned_cols=230  Identities=11%  Similarity=0.096  Sum_probs=130.7

Q ss_pred             EEeecCCCCeEEEeCCCEEEEEeCCCCccccccccCCCCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceeeEEEeec-
Q 007283           21 LISGHPKSNSILYTNGRSVIILDLSNPLQVSIYGEHAYPATVARFSPNGEWIASADVSGTVRIWGAHNDHVLKKEFRVL-   99 (609)
Q Consensus        21 ~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~~~~~~~-   99 (609)
                      .+.-||..+.|+--.|..+.||++++...+..+.- .++|.-=.|-.+. .|+-.. +..|.=|+++....-.+.|.-| 
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~-~e~VvfWkWis~~-~L~lVT-~taVYHW~~~g~s~P~k~fdR~~  143 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  143 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCCCEEEESSSS-EEEEEC-SSEEEEEESSSSCCCEEEEECCG
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEc-CCCcEEEEecCCC-EEEEEc-CCceEEEcccCCCCchhhhhhcc
Confidence            56678999999988899999999988776654443 3456555665443 344332 3568899986433222334333 


Q ss_pred             ---ccceeEEEECCCCCEEEEEE----CCCCcceEEEEEcCCCCeeEEEecCCccEEEEEEee--CCCeEE--EEec-CC
Q 007283          100 ---SGRIDDLQWSPDGLRIVACG----DGKGKSLVRAFMWDSGTNVGEFDGHSRRVLSCAFKP--SRPFRI--ATCG-ED  167 (609)
Q Consensus       100 ---~~~v~~~~~spdg~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~i--~t~~-~d  167 (609)
                         +..|-..+-++|.++++.+|    ++.-...++++..+... ...+.||......+.+.-  ....++  +.-+ ..
T Consensus       144 ~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~~  222 (327)
T d1utca2         144 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  222 (327)
T ss_dssp             GGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETTE
T ss_pred             cccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCCC
Confidence               34578899999999999877    32222234445444432 234566655444443321  111122  2222 22


Q ss_pred             CeEEEEeCCCC--------ceeee-cc---CcccceEEEEEcCCCCEEEEEeCCCcEEEEeCCCCccccccCcCCCCccc
Q 007283          168 FLVNFYEGPPF--------KFKLS-HR---GHSNFVNCVRFSPDGSKFISVSSDKKGIIYDGKTADKIGELSPEDGHKGS  235 (609)
Q Consensus       168 ~~i~~~~~~~~--------~~~~~-~~---~h~~~v~~l~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~h~~~  235 (609)
                      +.+.+-+....        +.... +.   ...+---++..++.-..+...+.-|.+.+||.+++.++..-..   ....
T Consensus       223 ~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRI---s~~~  299 (327)
T d1utca2         223 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRI---SGET  299 (327)
T ss_dssp             EEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEEC---CSSC
T ss_pred             cEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeec---CCCc
Confidence            45666554221        11111 11   1234445778888877888889999999999999988754321   2234


Q ss_pred             eEEEEECCCCCeEEEEeCCCcE
Q 007283          236 VYAVSWSPDGKQVLTASADKSA  257 (609)
Q Consensus       236 V~~l~~spd~~~l~s~s~d~~i  257 (609)
                      |...+-+....-++....+|.|
T Consensus       300 iF~~a~~~~~~Gi~~VNr~GqV  321 (327)
T d1utca2         300 IFVTAPHEATAGIIGVNRKGQV  321 (327)
T ss_dssp             EEEEEEETTTTEEEEEETTSEE
T ss_pred             eEEeccCCCCceEEEECCCCeE
Confidence            4433334443344444455544

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.82  E-value=1.7  Score=40.90  Aligned_cols=108  Identities=12%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             cCCCCcEEEEECCCCCEEE-EEeCC----CcEEEEcCCCCceeeEEEeecccceeEEEECCCCCEEEEEECCCC------
Q 007283           55 EHAYPATVARFSPNGEWIA-SADVS----GTVRIWGAHNDHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKG------  123 (609)
Q Consensus        55 ~h~~~v~~~~~sp~g~~la-s~~~d----~~i~vWd~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~------  123 (609)
                      ++.-.+...++||||++|| +-+.+    .++++.|+.+++.+...+.  ......++|++|++.|+.+.-+..      
T Consensus       122 ~~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~  199 (430)
T d1qfma1         122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDG  199 (430)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSS
T ss_pred             cccceecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCcccc
Confidence            3333455668899999998 43333    3799999999875543332  223367899999998887652210      


Q ss_pred             -----cceEEEEEcCCCCe----eEEEecC--CccEEEEEEeeCCCeEEEEe
Q 007283          124 -----KSLVRAFMWDSGTN----VGEFDGH--SRRVLSCAFKPSRPFRIATC  164 (609)
Q Consensus       124 -----~~~~~~~~~~~~~~----~~~~~~h--~~~v~~~~~~p~~~~~i~t~  164 (609)
                           ..--+++.+..+..    ...+...  ...+..+..++++.++++..
T Consensus       200 ~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~  251 (430)
T d1qfma1         200 TETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (430)
T ss_dssp             SCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             cccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEe
Confidence                 00123455544332    2233333  23466777888988766544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.72  E-value=0.19  Score=46.84  Aligned_cols=115  Identities=11%  Similarity=0.075  Sum_probs=74.0

Q ss_pred             eEEEEcCCCCEEEEEeCCC-----------cEEEEEecCCeeeeeEEE-ecCCCceEEEEECCCCCEEEEEeCC-CeEEE
Q 007283          451 TASAIAPDGSEAIIGSQDG-----------KLRVYSIRGDTLTEEAVL-EKHRGAVSVIRYSPDVSMFASGDVN-REAIV  517 (609)
Q Consensus       451 ~~~~~sp~g~~l~~gs~dg-----------~i~iw~~~~~~~~~~~~~-~~h~~~i~~v~~s~~~~~l~s~s~d-~~v~i  517 (609)
                      ...++..+|+.++.|+.+.           .+.+||..++.......+ ..|........+.+||.+++.|+.+ .++.+
T Consensus        23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~  102 (387)
T d1k3ia3          23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  102 (387)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeE
Confidence            3445567888888887531           367899887765433222 2333334456788999999998765 57999


Q ss_pred             EEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC------CeEEEEEcCC
Q 007283          518 WDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD------TCVIIYEIDK  565 (609)
Q Consensus       518 wd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D------~~v~vw~~~~  565 (609)
                      ||..+..............--+++..+||+.++.|+.+      ..+.+||...
T Consensus       103 yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~  156 (387)
T d1k3ia3         103 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSS  156 (387)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTT
T ss_pred             ecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCC
Confidence            99877655322111111222356777899999988753      3688898754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.00  E-value=4.8  Score=37.45  Aligned_cols=238  Identities=11%  Similarity=0.010  Sum_probs=114.6

Q ss_pred             EEeecCCCCeEEEe---CC---CEEEEEeCCCCcccc-ccccCCCCcEEEEECCCCCEEEEEeCC---------------
Q 007283           21 LISGHPKSNSILYT---NG---RSVIILDLSNPLQVS-IYGEHAYPATVARFSPNGEWIASADVS---------------   78 (609)
Q Consensus        21 ~~~~~~~~~~l~~~---~~---~~~~i~~~~~~~~~~-~~~~h~~~v~~~~~sp~g~~las~~~d---------------   78 (609)
                      ....+|+|+.++|.   +|   -.++++|+.+++.+. .+.  ......++|++|++.|.-...|               
T Consensus       129 ~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~--~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE--RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE--EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc--cccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            45679999999876   34   388899999987643 121  1112467899999988744322               


Q ss_pred             -CcEEEEcCCCCcee-eEEEeecc--cceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCC----------eeEEEecC
Q 007283           79 -GTVRIWGAHNDHVL-KKEFRVLS--GRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGT----------NVGEFDGH  144 (609)
Q Consensus        79 -~~i~vWd~~~~~~~-~~~~~~~~--~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~h  144 (609)
                       ..|..|.+.+.... ...+....  ..+..+..++|+++++............++..+...          ....+...
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  286 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc
Confidence             24666666554311 11233322  235667889999988754322111122233333110          01112221


Q ss_pred             CccEEEEEEeeCCCeEEEEe--cCCCeEEEEeCCCC---ceeeeccCcccceEEEEEcCCCCEEEEE-eCCC--cEEEEe
Q 007283          145 SRRVLSCAFKPSRPFRIATC--GEDFLVNFYEGPPF---KFKLSHRGHSNFVNCVRFSPDGSKFISV-SSDK--KGIIYD  216 (609)
Q Consensus       145 ~~~v~~~~~~p~~~~~i~t~--~~d~~i~~~~~~~~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~d~--~i~iwd  216 (609)
                      ..... ..-+.++.+.+.|-  +.++.+...+....   .....+..+...+..-.++..+.+|+.. -.++  .+.+++
T Consensus       287 ~~~~~-~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~  365 (430)
T d1qfma1         287 EGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD  365 (430)
T ss_dssp             SSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             ccceE-EEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEE
Confidence            22222 22233333323332  12234433333221   1122233344444433344444455544 3554  467788


Q ss_pred             CCCCccccccCcCCCCccceEEEEECCCCCe-EEEEe-C--CCcEEEeeccc
Q 007283          217 GKTADKIGELSPEDGHKGSVYAVSWSPDGKQ-VLTAS-A--DKSAKVWDISE  264 (609)
Q Consensus       217 ~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~-l~s~s-~--d~~i~iwd~~~  264 (609)
                      ..+++......   ...+.|..+...++... .++-+ .  =.++.-+|+..
T Consensus       366 ~~~~~~~~~~~---~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t  414 (430)
T d1qfma1         366 LATGALLKIFP---LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (430)
T ss_dssp             TTTCCEEEEEC---CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             CCCCcEEEecC---CCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCC
Confidence            77665433222   12345666655555443 22222 1  15566677654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.34  E-value=4.9  Score=34.50  Aligned_cols=158  Identities=11%  Similarity=-0.020  Sum_probs=93.1

Q ss_pred             cCceeEEeecCCCCeEEEeC--CCEEEEEeCCCCc----cccccccCCCCcEEEEECCCCCEEEEEe-CCCcEEEEcCCC
Q 007283           16 RGRGILISGHPKSNSILYTN--GRSVIILDLSNPL----QVSIYGEHAYPATVARFSPNGEWIASAD-VSGTVRIWGAHN   88 (609)
Q Consensus        16 ~~~~~~~~~~~~~~~l~~~~--~~~~~i~~~~~~~----~~~~~~~h~~~v~~~~~sp~g~~las~~-~d~~i~vWd~~~   88 (609)
                      -+.+..+.+++.++.|.+..  .+.|.-.++....    ........-..+..+++.+-++.|.-++ ..+.|.+.++..
T Consensus        29 ~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g  108 (266)
T d1ijqa1          29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  108 (266)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCC
Confidence            34667899999999898874  3555555553211    1112222234577899998777776544 567899999876


Q ss_pred             CceeeEEEeecccceeEEEECCCCCEEEEEECCCCcceEEEEEcCCCCeeEEEe-cCCccEEEEEEeeCCCeEEEEecCC
Q 007283           89 DHVLKKEFRVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRAFMWDSGTNVGEFD-GHSRRVLSCAFKPSRPFRIATCGED  167 (609)
Q Consensus        89 ~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~i~t~~~d  167 (609)
                      ... ...+.........++..|...+|..+..+....+.+ ...+ +.....+. ..-.....+++.+.+..+..+-...
T Consensus       109 ~~~-~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r-~~~d-Gs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~  185 (266)
T d1ijqa1         109 VKR-KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKK-GGLN-GVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKL  185 (266)
T ss_dssp             SSE-EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEE-EETT-SCCEEEEECSSCSCEEEEEEETTTTEEEEEETTT
T ss_pred             ceE-EEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeE-eccC-CCceecccccccceeeEEEeeccccEEEEecCCc
Confidence            542 223334445678899999766666655433222222 2222 33333333 3345678899998777545554556


Q ss_pred             CeEEEEeCC
Q 007283          168 FLVNFYEGP  176 (609)
Q Consensus       168 ~~i~~~~~~  176 (609)
                      +.|...+..
T Consensus       186 ~~I~~~~~d  194 (266)
T d1ijqa1         186 HSISSIDVN  194 (266)
T ss_dssp             TEEEEEETT
T ss_pred             CEEEEEECC
Confidence            677766643

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=89.90  E-value=6.3  Score=36.16  Aligned_cols=96  Identities=8%  Similarity=0.022  Sum_probs=57.6

Q ss_pred             CCCCEEEEEe-CCCcEEEEEecCCeeeeeEEEecCCCceEEEEE--CCCCCEEEEEeCCC------------------eE
Q 007283          457 PDGSEAIIGS-QDGKLRVYSIRGDTLTEEAVLEKHRGAVSVIRY--SPDVSMFASGDVNR------------------EA  515 (609)
Q Consensus       457 p~g~~l~~gs-~dg~i~iw~~~~~~~~~~~~~~~h~~~i~~v~~--s~~~~~l~s~s~d~------------------~v  515 (609)
                      +||+++.+.. .+.+|.+-|++.-........ .....+..+..  .|+-.|++.++.+.                  .+
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence            4777776665 467888888765543221122 23334555554  34566777665532                  24


Q ss_pred             EEEEccCCceEEeeecCCCCceEEEEECCCCcEEEEEeCC
Q 007283          516 IVWDRVSREVKLKNMLYHTARINCLAWSPNNSMVATGSLD  555 (609)
Q Consensus       516 ~iwd~~~~~~~~~~~~~h~~~i~~l~~s~d~~~l~s~s~D  555 (609)
                      ...|..+.+...+...  ......++++|||+++++.+.+
T Consensus       176 t~ID~~tm~V~~QV~V--~g~ld~~~~s~dGK~af~TsyN  213 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLV--SGNLDNCDADYEGKWAFSTSYN  213 (459)
T ss_dssp             EEEETTTTEEEEEEEE--SSCCCCEEECSSSSEEEEEESC
T ss_pred             EEEecCCceEEEEeee--CCChhccccCCCCCEEEEEecc
Confidence            5667766555433322  3356689999999999988755

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=86.63  E-value=13  Score=34.68  Aligned_cols=53  Identities=9%  Similarity=0.148  Sum_probs=36.0

Q ss_pred             CcEEEEECCCCCEEEEEeCCCcEEEEcCCCCceee-EEEee------cccceeEEEECCC
Q 007283           59 PATVARFSPNGEWIASADVSGTVRIWGAHNDHVLK-KEFRV------LSGRIDDLQWSPD  111 (609)
Q Consensus        59 ~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~~~-~~~~~------~~~~v~~~~~spd  111 (609)
                      .-++|+|.|||+++++--.+|+|++.+..+++... ..+..      -.+....++|+||
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            46799999999999987668999999876654211 11110      1234567899986

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=85.92  E-value=11  Score=33.46  Aligned_cols=186  Identities=16%  Similarity=0.156  Sum_probs=94.8

Q ss_pred             EEEECCCCCEEEEEeC------------CCcEEEEcCCCCceeeEEEeecccc-------eeE--EEECCCCC-EEEEEE
Q 007283           62 VARFSPNGEWIASADV------------SGTVRIWGAHNDHVLKKEFRVLSGR-------IDD--LQWSPDGL-RIVACG  119 (609)
Q Consensus        62 ~~~~sp~g~~las~~~------------d~~i~vWd~~~~~~~~~~~~~~~~~-------v~~--~~~spdg~-~l~~~~  119 (609)
                      .++..|||..+.+++.            .|.|-+.|+.+.+.....+......       .-.  +.-.+||+ +|+++.
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            4677888877765432            3788888887654322222221111       112  22355676 455555


Q ss_pred             CCCCcceEEEEEcCCCCe----eEEEec-CCccEEEEEEeeCCCeEEEEec--C---------------CCeEEEEeCCC
Q 007283          120 DGKGKSLVRAFMWDSGTN----VGEFDG-HSRRVLSCAFKPSRPFRIATCG--E---------------DFLVNFYEGPP  177 (609)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~----~~~~~~-h~~~v~~~~~~p~~~~~i~t~~--~---------------d~~i~~~~~~~  177 (609)
                      -......+.++..+....    +.++.. .......+++..++.+ ++|-.  .               -+.+..|+...
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~f-y~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHF-YATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEE-EEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCE-EEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence            433344566666654332    122222 2245778888888864 55521  1               11233344332


Q ss_pred             CceeeeccCcccceEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCccccccCcCCCCccceEEEEECCCCCeEEEEe
Q 007283          178 FKFKLSHRGHSNFVNCVRFSPDGSKFISV-SSDKKGIIYDGKTADKIGELSPEDGHKGSVYAVSWSPDGKQVLTAS  252 (609)
Q Consensus       178 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~~~h~~~V~~l~~spd~~~l~s~s  252 (609)
                        .... .......+-++++||++.|..+ +..+.|..|+......+...... .-.+..-.+.+.+.+..+..++
T Consensus       198 --~~~~-~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~-~l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         198 --VRVV-AEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             --EEEE-EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEE
T ss_pred             --eEEE-cCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEe-cCCCCCCccEEecCCCEEEEEE
Confidence              2221 2233457889999999876555 45778888887644322211100 1123345667765433333443

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=81.40  E-value=11  Score=29.93  Aligned_cols=134  Identities=16%  Similarity=0.086  Sum_probs=70.7

Q ss_pred             CCcEEEEECCCCCEEEEEeCCCcEEEEcCCCCce-------eeEEE-eecccceeEEEECCCCCEEEEEECCCCcceEEE
Q 007283           58 YPATVARFSPNGEWIASADVSGTVRIWGAHNDHV-------LKKEF-RVLSGRIDDLQWSPDGLRIVACGDGKGKSLVRA  129 (609)
Q Consensus        58 ~~v~~~~~sp~g~~las~~~d~~i~vWd~~~~~~-------~~~~~-~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~  129 (609)
                      .++..++|||+|++-|.-..    +++.-.-..+       ..+.. ..-=.....+.|.|.|...++. +++      +
T Consensus        40 ~n~~~i~fsP~G~LyaVr~~----~lY~Gp~~s~~nq~wf~~atrIG~ggWn~FkflffdP~G~LyaVt-~~~------L  108 (235)
T d1tl2a_          40 SNFKFLFLSPGGELYGVLND----KIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAVS-KDK------L  108 (235)
T ss_dssp             TTCSEEEECTTSCEEEEETT----EEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEEE-TTE------E
T ss_pred             cceeEEEECCCCcEEEEECC----eEEECCCCCcchHHHHHhhhhcccCcccceEEEEECCCceEEEec-Ccc------e
Confidence            56888999999999886532    3443221100       00000 0111235789999999655544 432      2


Q ss_pred             EEcCCC--Ce------eEE-EecCCccEEEEEEeeCCCeEEEEecCCCeEEEEeCCCC-------ceeeeccCcccceEE
Q 007283          130 FMWDSG--TN------VGE-FDGHSRRVLSCAFKPSRPFRIATCGEDFLVNFYEGPPF-------KFKLSHRGHSNFVNC  193 (609)
Q Consensus       130 ~~~~~~--~~------~~~-~~~h~~~v~~~~~~p~~~~~i~t~~~d~~i~~~~~~~~-------~~~~~~~~h~~~v~~  193 (609)
                      +.-...  .+      ... =++--..+..+-|+|+|.. .++ -.|. +.-+..+..       .....-+++-....-
T Consensus       109 Yr~~pPtn~~q~W~g~a~~vG~~gw~df~~lFFdP~G~L-YaV-~~~~-l~k~~pP~~~~d~WL~~st~igr~~w~~~~f  185 (235)
T d1tl2a_         109 YKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYL-YAV-HGQQ-FYKALPPVSNQDNWLARATKIGQGGWDTFKF  185 (235)
T ss_dssp             EEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCE-EEE-ETTE-EEEECCCSSTTCCHHHHCEEEESSSGGGEEE
T ss_pred             ecCCcCcccchhhhhhhhhhccCCcCceeEEEECCCceE-EEE-ECCc-EEEcCCCCCCCchhhhhhhhhccCcccCceE
Confidence            222211  10      111 1233456788899999975 333 3333 444432221       111112467777789


Q ss_pred             EEEcCCCCEEEE
Q 007283          194 VRFSPDGSKFIS  205 (609)
Q Consensus       194 l~~s~dg~~l~s  205 (609)
                      +.|+|+|.+..+
T Consensus       186 i~Fs~dG~L~~v  197 (235)
T d1tl2a_         186 LFFSSVGTLFGV  197 (235)
T ss_dssp             EEECTTSCEEEE
T ss_pred             EEECCCCcEEEE
Confidence            999999986655

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=80.68  E-value=11  Score=35.26  Aligned_cols=54  Identities=13%  Similarity=0.148  Sum_probs=37.4

Q ss_pred             ceeEEEEcCCCCEEEEEeCCCcEEEEEecCCeeeeeEEEe------cCCCceEEEEECCC
Q 007283          449 PVTASAIAPDGSEAIIGSQDGKLRVYSIRGDTLTEEAVLE------KHRGAVSVIRYSPD  502 (609)
Q Consensus       449 ~~~~~~~sp~g~~l~~gs~dg~i~iw~~~~~~~~~~~~~~------~h~~~i~~v~~s~~  502 (609)
                      ...++++.|||+++++--.+|+|++++..++.......+.      .-++....|+|+|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3678999999998887755799999886665433222211      11356788999986