Citrus Sinensis ID: 007307

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPLNPR
cccccHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccccEEEcccccccccccEEEccccccccccccEEEEEcccccccccEEEEccccccEEEEEEEEccccccccccccEEEEEccEEEEEEcccccccccccccEEEEEEEEccccEEEEEEEccccccEEEcEEEEEcccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccccHHHHHHHHHcccccccccccccccccEEEEEEEEEccccccccccEEEEEEccccccccccccccccccEEEEEEEEEEcccccEEEEEcccccHHHHHHHHHcccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccHHHHccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEEccccccccccccccccccccccccccccEEEEEHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccEEEccccHcccccccccccccccccccccEEEEcccccccccEEEEEcccccEEEEEEEEEEccccccccccEEEEEEcccEEEEEEEEEEcccccccEEEEEEEEcccccEEEEEEEccccccEEEEEEEccccccccccccccccHEEHEEEEccccccccccEEEccccccccEEcccccccccccccccEEEcccccccccccccccccHHHHHHcccccccEEEEEcccccccEEEEEEEHHHHHHcccccEEEEEEEEcccccccccccccccccEEEccccccccccEEEEEEEccccccccEEEHHEEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccccccEEEcccccccccEEEEEEEccccccccccHHHHHHHHHcEEEcccccccccccHHHHcccccEEEEcccccccccccHHHHHHcccccEEEEccccccccccccccccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEEEEHcccccccccccccc
msllspssfFFLSLLLVLPlslassypykasyridcgsatsttdpfnttwqaddryytsgatsivseplhfrfphektlryfppssgkkncyiipnlppgryyirtftvydnydgkshspsfdvsvegtlvfswrspwpeglardgaySDLFAFvkdgeldlcfysfatdppviaslevqqidplsydaatignnhILVNygrltsgsnqwgpgfsndaddfgrswqsdaasrspnakssiksvttreritntnqppnyypmklYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVndknvtrvdIFNSVGSFAAYSWHYVAKNlssteltvKLVPVVGAALISglenyalvpndlstVPEQVIAMRALKEslrvpdrmgwngdpcaptnwdawegitchpnkdeTAVVISQIDlgsqglkgyiSDKISLLSNLvnldlsdnqftgsipdsltssSKLQLVLLNNnllegrvpeelysigvhggafdlsgnkglcgapslpscplfwengglskggKIAIVILSLVLFSGVLLVVYICCIrrgrndydfglpqdlMSLSAKRNRYQRQKSLMLLEMESqhakglptlplnpr
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGsatsttdpfnttwQADDRYYTSGATSIVSEPLHFRFPHEKTlryfppssgkkncYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWqsdaasrspnakssiksvttreritntnqppnyypMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKEslrvpdrmgwNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEmesqhakglptlplnpr
MsllspssffflslllvlplslassYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKIsllsnlvnldlsdnQFTGSIPDSLTSSSKlqlvllnnnllEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAivilslvlfsgvllvvYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPLNPR
*******SFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQW**********************************************NYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSI*******SKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLVVYICCIRRGRNDYDFGLPQDL*************************************
******S**FFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVS****FRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG**********************AIVILSLVLFSGVLLVVYICCI********************************LLEMESQHAKGLPT******
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRS********************TRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPLNPR
MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLVVYICCIRRGR*********************QRQKSLMLLEMESQHAKGLPTLPLNP*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLLSPSSFFFLSLLLVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQHAKGLPTLPLNPR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query608 2.2.26 [Sep-21-2011]
Q9FZB1 872 Probable LRR receptor-lik no no 0.687 0.479 0.284 2e-33
O81069 884 Probable leucine-rich rep no no 0.731 0.503 0.266 3e-32
Q9FZB8 871 Probable LRR receptor-lik no no 0.824 0.575 0.265 3e-30
C0LGT5 866 Probable LRR receptor-lik no no 0.661 0.464 0.266 1e-29
Q9LIG2 899 Receptor-like protein kin no no 0.819 0.553 0.268 6e-29
C0LGD6 852 Probable LRR receptor-lik no no 0.712 0.508 0.292 8e-29
Q9SNA3 889 Putative receptor-like pr no no 0.699 0.478 0.261 2e-28
Q9ZQQ7 886 Putative leucine-rich rep no no 0.875 0.600 0.241 3e-28
C0LGD8 864 Probable LRR receptor-lik no no 0.705 0.496 0.281 3e-28
Q9ZQR3 868 Leucine-rich repeat recep no no 0.866 0.607 0.252 4e-28
>sp|Q9FZB1|Y5188_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51880 OS=Arabidopsis thaliana GN=At1g51880 PE=2 SV=1 Back     alignment and function desciption
 Score =  144 bits (363), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 139/489 (28%), Positives = 225/489 (46%), Gaps = 71/489 (14%)

Query: 34  IDCG----SATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEK-TLRYFPPSSGK 88
           +DCG    +AT T    N T+++D  Y  SG    +S     +   +  T+R FP   G+
Sbjct: 32  LDCGLVPKNATYTEKTTNITYKSDANYIDSGLVGRISAEYKAQLQQQTWTVRSFP--EGE 89

Query: 89  KNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAY 148
           +NCY        RY IR    Y NYDG    P FD+ +  +    W S   +G+  +GA 
Sbjct: 90  RNCYNFNLTAKSRYLIRATFTYGNYDGLRQVPKFDIHIGPS---KWTSVKLDGVG-NGAV 145

Query: 149 SDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTSGS 208
            ++   +    L +C        P I+SLE++ ++  +Y    +  +  L+ + R+   +
Sbjct: 146 LEMIHVLTQDRLQICLVKTGKGIPFISSLELRPLNNNTY----LTQSGSLIGFARVFFSA 201

Query: 209 NQWGPGFSN-DADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQT 267
               P F   D D   R W     +        +KS++T   +  +N  P   P  + +T
Sbjct: 202 T---PTFIRYDEDIHDRVWVRQFGN-------GLKSISTDLLVDTSN--PYDVPQAVAKT 249

Query: 268 AIVSSGAIQYNLAVDAKLDYL-----IWFHFAEI----DSSVTK------AGQRVFDILV 312
           A V S A Q  L  D  LD +     ++ HFAEI    D+ + +       GQ V+  L 
Sbjct: 250 ACVPSNASQ-PLIFDWTLDNITSQSYVYMHFAEIQTLKDNDIREFNITYNGGQNVYSYLR 308

Query: 313 NDKNVTRVDIFNSV------GSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYA 366
            +K      +F+S       GSF+          LS T+     +P     LI+GLE Y 
Sbjct: 309 PEKFEIST-LFDSKPLSSPDGSFS----------LSFTKTGNSTLP----PLINGLEIYK 353

Query: 367 LVPN-DLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITC-HPNKDETAV 424
           ++   +L T  ++V AM  +K +  +  ++ W GDPCAP ++  WEG+ C +PN D+  +
Sbjct: 354 VLDLLELETDQDEVSAMINIKATYDLSKKVSWQGDPCAPKSYQ-WEGLNCSYPNSDQPRI 412

Query: 425 VISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLTSSSKLQLVLLNNNL- 483
           +   ++L    L G I+ +IS L+ L+ LDLS N  +G IP+       L+L+ L+ NL 
Sbjct: 413 I--SLNLAENKLTGTITPEISKLTQLIELDLSKNDLSGEIPEFFADMKLLKLINLSGNLG 470

Query: 484 LEGRVPEEL 492
           L   +P+ +
Sbjct: 471 LNSTIPDSI 479

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1
>sp|O81069|Y2899_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g28990 OS=Arabidopsis thaliana GN=At2g28990 PE=2 SV=1 Back     alignment and function description
>sp|Q9FZB8|Y5181_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g51810 OS=Arabidopsis thaliana GN=At1g51810 PE=2 SV=1 Back     alignment and function description
>sp|C0LGT5|Y5169_ARATH Probable LRR receptor-like serine/threonine-protein kinase At5g16900 OS=Arabidopsis thaliana GN=At5g16900 PE=2 SV=1 Back     alignment and function description
>sp|Q9LIG2|RLK6_ARATH Receptor-like protein kinase At3g21340 OS=Arabidopsis thaliana GN=At3g21340 PE=1 SV=1 Back     alignment and function description
>sp|C0LGD6|Y1570_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g05700 OS=Arabidopsis thaliana GN=At1g05700 PE=2 SV=1 Back     alignment and function description
>sp|Q9SNA3|Y3463_ARATH Putative receptor-like protein kinase At3g46340 OS=Arabidopsis thaliana GN=At3g46340 PE=3 SV=1 Back     alignment and function description
>sp|Q9ZQQ7|Y2144_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 OS=Arabidopsis thaliana GN=At2g14440 PE=1 SV=1 Back     alignment and function description
>sp|C0LGD8|Y1755_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g07550 OS=Arabidopsis thaliana GN=At1g07550 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZQR3|Y2451_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 OS=Arabidopsis thaliana GN=At2g14510 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
449445156626 PREDICTED: putative leucine-rich repeat 0.968 0.940 0.692 0.0
225423893630 PREDICTED: Di-glucose binding protein wi 0.978 0.944 0.677 0.0
255566849674 serine-threonine protein kinase, plant-t 0.901 0.813 0.710 0.0
42562316628 Di-glucose binding protein with Leucine- 0.947 0.917 0.677 0.0
356499717636 PREDICTED: putative leucine-rich repeat 0.932 0.891 0.67 0.0
356498336642 PREDICTED: putative leucine-rich repeat 0.940 0.890 0.657 0.0
449526481591 PREDICTED: receptor-like protein kinase 0.912 0.939 0.680 0.0
357488299632 Receptor-like protein kinase [Medicago t 0.967 0.930 0.645 0.0
356574639626 PREDICTED: probable LRR receptor-like se 0.976 0.948 0.612 0.0
12320747585 hypothetical protein [Arabidopsis thalia 0.855 0.888 0.639 0.0
>gi|449445156|ref|XP_004140339.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/617 (69%), Positives = 489/617 (79%), Gaps = 28/617 (4%)

Query: 16  LVLPLSLASSYPYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPH 75
           ++ P S+++ YP+  SY IDCG   ++TDPF TTW +D R+YT G T+IVSEPL FR P 
Sbjct: 12  VITPSSISAPYPFSISYHIDCGGLINSTDPFGTTWLSD-RFYTGGTTAIVSEPLIFRHPQ 70

Query: 76  EKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWR 135
           EK LR+FP SSGKKNCYIIPNLP GRYY RTFTVYDNYDGKSH PSFD S+EGTLVFSWR
Sbjct: 71  EKNLRFFPLSSGKKNCYIIPNLPTGRYYFRTFTVYDNYDGKSHPPSFDASIEGTLVFSWR 130

Query: 136 SPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNN 195
           SPW E LAR GAYSDLFAF+ DGE D CFYS +TD PVI S ++ Q+DP+SY++  IG N
Sbjct: 131 SPWSEDLARHGAYSDLFAFIGDGEADFCFYSLSTDSPVIGSFQLVQVDPMSYNSTAIGEN 190

Query: 196 HILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQ 255
            ILVNYGRLT GS QWGPGFSND D FGRSWQSD+    P+ K S++ ++T + ++  +Q
Sbjct: 191 FILVNYGRLTCGSEQWGPGFSNDTDVFGRSWQSDSIFIIPSLKQSVRVLSTAKSVSGADQ 250

Query: 256 PPNYYPMKLYQTAIV--SSGAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVN 313
            PNY+PMKLYQ A+    +G ++Y L VDAKLDYL+W HFAEIDSSV KAGQRVFD+++N
Sbjct: 251 QPNYFPMKLYQKAVTVGGTGVLEYELPVDAKLDYLVWLHFAEIDSSVKKAGQRVFDVVIN 310

Query: 314 DKNVTRVDIFNSVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLS 373
             N TR+DIF  VGSFAAYSW Y  KNLSS+ L+VKLV VVG+ L+SGLENYALVP DLS
Sbjct: 311 GNNATRIDIFAKVGSFAAYSWSYTMKNLSSSALSVKLVGVVGSPLLSGLENYALVPRDLS 370

Query: 374 TVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGS 433
           T PEQV AMRALKESLRVP RMGWNGDPCAPTNWDAWEGITC PNK+ TA+VI QIDLGS
Sbjct: 371 TAPEQVSAMRALKESLRVPGRMGWNGDPCAPTNWDAWEGITCRPNKNATALVIFQIDLGS 430

Query: 434 QGLKGYISDKISLLSNLVN-----------------------LDLSDNQFTGSIPDSLTS 470
           QGLKGYISD+I LL+NLV+                       LDLS NQ TGSIPDSL +
Sbjct: 431 QGLKGYISDQIVLLTNLVSLNLSSNSLGGTIPPGLGEHSLTRLDLSKNQLTGSIPDSL-A 489

Query: 471 SSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSK 530
           S  LQLV+LN+NLLEGRVPEELYSIGVHGGA DLS NKGLCG PSLP+CPLFWE+G LSK
Sbjct: 490 SRNLQLVILNDNLLEGRVPEELYSIGVHGGAIDLSSNKGLCGVPSLPTCPLFWEHGRLSK 549

Query: 531 GGKIAIVILSLVLFSGVLLVVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLL 590
            GKIAI + S  LF  +L ++YICCIRR RNDYDFGLP +L+SL+AKRNRYQRQKSLMLL
Sbjct: 550 TGKIAIALSSTFLFCALLAIIYICCIRRSRNDYDFGLPSELLSLAAKRNRYQRQKSLMLL 609

Query: 591 EMESQHAKGL-PTLPLN 606
           EMESQHAKGL P  PLN
Sbjct: 610 EMESQHAKGLSPFTPLN 626

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225423893|ref|XP_002281668.1| PREDICTED: Di-glucose binding protein with Leucine-rich repeat domain-like [Vitis vinifera] gi|297737862|emb|CBI27063.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255566849|ref|XP_002524408.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223536369|gb|EEF38019.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|42562316|ref|NP_564237.2| Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana] gi|332192522|gb|AEE30643.1| Di-glucose binding protein with Leucine-rich repeat domain [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356499717|ref|XP_003518683.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Glycine max] Back     alignment and taxonomy information
>gi|356498336|ref|XP_003518009.1| PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440-like [Glycine max] Back     alignment and taxonomy information
>gi|449526481|ref|XP_004170242.1| PREDICTED: receptor-like protein kinase At3g21340-like, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|357488299|ref|XP_003614437.1| Receptor-like protein kinase [Medicago truncatula] gi|355515772|gb|AES97395.1| Receptor-like protein kinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356574639|ref|XP_003555453.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g16900-like [Glycine max] Back     alignment and taxonomy information
>gi|12320747|gb|AAG50525.1|AC084221_7 hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
TAIR|locus:2031175628 AT1G25570 [Arabidopsis thalian 0.761 0.737 0.634 7.1e-215
TAIR|locus:2032221626 RLP4 "receptor like protein 4" 0.764 0.742 0.331 2.1e-61
TAIR|locus:2094103519 AT3G19230 [Arabidopsis thalian 0.720 0.843 0.272 2.7e-31
TAIR|locus:2195855 876 AT1G51910 [Arabidopsis thalian 0.669 0.464 0.276 4.6e-26
TAIR|locus:2126540 876 AT4G29990 [Arabidopsis thalian 0.735 0.510 0.258 2.2e-25
TAIR|locus:2028446 888 AT1G49100 [Arabidopsis thalian 0.748 0.512 0.253 3.9e-24
TAIR|locus:2024987 864 AT1G07550 [Arabidopsis thalian 0.703 0.495 0.259 2.9e-23
TAIR|locus:2078171 883 AT3G46400 [Arabidopsis thalian 0.713 0.491 0.251 3e-23
TAIR|locus:2055160 886 AT2G14440 [Arabidopsis thalian 0.708 0.486 0.252 1.1e-22
TAIR|locus:2083023517 AT3G05990 [Arabidopsis thalian 0.697 0.820 0.257 2.2e-22
TAIR|locus:2031175 AT1G25570 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1602 (569.0 bits), Expect = 7.1e-215, Sum P(2) = 7.1e-215
 Identities = 297/468 (63%), Positives = 360/468 (76%)

Query:    27 PYKASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSS 86
             P+  S+ IDCGS  ++TD FN TW   D++Y+ G+T++VSEPL F    EKT+RYFP S 
Sbjct:    25 PFNTSFFIDCGSPETSTDVFNRTW-LPDQFYSGGSTAVVSEPLRFHLIAEKTIRYFPLSF 83

Query:    87 GKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDG 146
             GKKNCY++P LPPGRYY+RTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPE L RDG
Sbjct:    84 GKKNCYVVP-LPPGRYYLRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPESLLRDG 142

Query:   147 AYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSYDAATIGNNHILVNYGRLTS 206
             +YSDLFAF+ DGELDLCFYS ATDPP++ SLEV Q+DP SYDA   G N +LVNYGRL+ 
Sbjct:   143 SYSDLFAFIGDGELDLCFYSIATDPPIVGSLEVLQVDPSSYDADGTGQNVLLVNYGRLSC 202

Query:   207 GSNQWGPGFSNDADDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQ 266
             GS+QWGPGF+N  D+FGRSWQSD   RS +++S  +S++T E+I   +Q PNY+PMKLYQ
Sbjct:   203 GSDQWGPGFTNHTDNFGRSWQSDEDFRSEDSRSVARSLSTLEKIKGVDQAPNYFPMKLYQ 262

Query:   267 TAIVSSG--AIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTRVDIFN 324
             TA+  SG  ++ Y L VDAKLDYL+WFHF+EIDS+V KAGQRVFD++VND NV+RVD+F+
Sbjct:   263 TAVTVSGGGSLVYELEVDAKLDYLLWFHFSEIDSTVKKAGQRVFDLVVNDNNVSRVDVFH 322

Query:   325 SVGSFAAYSWHYVAKNLSSTELTVKLVPVVGAALISGLENYALVPNDLSTVPEQVIAMRA 384
              VG FAAYS +Y  KNLSST +TVKL  V GA +ISGLENYA+VP D++TVPEQV AM+A
Sbjct:   323 EVGGFAAYSLNYTVKNLSSTIVTVKLSSVSGAPIISGLENYAIVPADMATVPEQVTAMKA 382

Query:   385 LKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKI 444
             LK+SLRVPDRMGWNGDPCAPT+WDAWEG++C PN   +A+VI QIDLGSQGLKG+IS++I
Sbjct:   383 LKDSLRVPDRMGWNGDPCAPTSWDAWEGVSCRPNSQGSALVIFQIDLGSQGLKGFISEQI 442

Query:   445 XXXXXXXXXXXXXXQFTGSIPDSLTSSSKXXXXXXXXXXXEGRVPEEL 492
                             +G +P  L   S             G +PE L
Sbjct:   443 SLLTNLNSLNLSSNTLSGQLPLGLGHKSLVSLDLSNNQLT-GPIPESL 489
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0005773 "vacuole" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2032221 RLP4 "receptor like protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094103 AT3G19230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2195855 AT1G51910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126540 AT4G29990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028446 AT1G49100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024987 AT1G07550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2078171 AT3G46400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055160 AT2G14440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083023 AT3G05990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
AT1G25570
leucine-rich repeat protein-related; leucine-rich repeat protein-related; FUNCTIONS IN- protein binding; LOCATED IN- plasma membrane, vacuole; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Leucine-rich repeat (InterPro-IPR001611), Leucine-rich repeat, N-terminal (InterPro-IPR013210); BEST Arabidopsis thaliana protein match is- AtRLP4 (Receptor Like Protein 4); protein binding (TAIR-AT1G28340.1); Has 22991 Blast hits to 6621 proteins in 344 species- Archae - 2; Bacteria - 311; Metazoa - 61; Fungi - 5; Plants - 21791; Viruses - 0; Othe [...] (628 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
AT4G10790
UBX domain-containing protein; UBX domain-containing protein; INVOLVED IN- biological_process u [...] (480 aa)
      • 0.966
AT2G04870
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (72 aa)
      • 0.966
AT1G26330
DNA binding; DNA binding; FUNCTIONS IN- DNA binding; INVOLVED IN- biological_process unknown; L [...] (1189 aa)
      • 0.966
AtGRF6
AtGRF6 (GROWTH-REGULATING FACTOR 6); transcription activator; Growth regulating factor encoding [...] (244 aa)
      • 0.927
AT1G42980
formin homology 2 domain-containing protein / FH2 domain-containing protein; formin homology 2 [...] (299 aa)
      • 0.921
AT5G56000
heat shock protein 81-4 (HSP81-4); heat shock protein 81-4 (HSP81-4); FUNCTIONS IN- unfolded pr [...] (699 aa)
      • 0.408

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
PLN03150623 PLN03150, PLN03150, hypothetical protein; Provisio 1e-115
pfam12819335 pfam12819, Malectin_like, Carbohydrate-binding pro 4e-59
pfam11721164 pfam11721, Malectin, Di-glucose binding within end 6e-12
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 2e-11
pfam11721164 pfam11721, Malectin, Di-glucose binding within end 8e-08
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 2e-06
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 3e-06
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 5e-06
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 9e-06
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 2e-05
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 2e-05
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 2e-04
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 2e-04
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 3e-04
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 0.001
PLN00113 968 PLN00113, PLN00113, leucine-rich repeat receptor-l 0.003
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional Back     alignment and domain information 
 Score =  355 bits (913), Expect = e-115
 Identities = 204/588 (34%), Positives = 289/588 (49%), Gaps = 54/588 (9%)

Query: 9   FFFLSLLLVLPLSLASSYPYKASYRIDCGS-ATSTTDPFNTTWQADDRYYTSGATSIVSE 67
               S LL +  SLAS  P+  + RI CG+     T P NT W   D  YT G  +  + 
Sbjct: 5   LLAASALLAVLASLASPEPF--TMRISCGARVNVRTAPTNTLW-YKDFAYTGGIPANATR 61

Query: 68  PLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYYIRTFTVYDNYDGKSHSPSFDVSVE 127
           P  F  P  KTLRYFP S G +NCY I  +P G Y +R F            P FDVSVE
Sbjct: 62  P-SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHYSVRVFFGLVAEPNFDSEPLFDVSVE 120

Query: 128 GTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQIDPLSY 187
           GT + S +S W      +  +++   F+ DG   +CF+S     P I S+E+ Q+D  +Y
Sbjct: 121 GTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQVDDKAY 178

Query: 188 D-AATIGNNHILVNYGRLTSGSNQWGPGFSNDADDFGRSWQSDA--ASRSPNAKSSIKSV 244
           +   + G   IL    RL+ G+ +    F  D D  G  W  D            S +++
Sbjct: 179 NFGPSWGQGVILRTAKRLSCGAGK--SKF--DEDYSGDHWGGDRFWNRMQTFGSGSDQAI 234

Query: 245 TTRERITNTNQPPNYYPMKLYQTAIVSSG---AIQYNLAVDAKLDYLIWFHFAEIDSSVT 301
           +T   I   +  PN+YP  LYQ+A+VS+     + Y + VD   +Y +W HFAEID+S+T
Sbjct: 235 STENVIKKASNAPNFYPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSIT 294

Query: 302 KAGQRVFDILVN-DKNVTRVDIFNSVGS-FAAYSWHYVAKNLSSTELTVKLVPVVGA-AL 358
             G+RVFD+L+N D     VDI    G  + A   +     +S   LT+ L P  G  A+
Sbjct: 295 AEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVLNKTVA-VSGRTLTIVLQPKKGTHAI 353

Query: 359 ISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGITCHPN 418
           I+ +E + ++  +  T+ E+V A++ LK SL +P R GWNGDPC P     W G  C  +
Sbjct: 354 INAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ-HPWSGADCQFD 412

Query: 419 KDETAVVISQIDLGSQGLKGYISDKISLL------------------------SNLVNLD 454
             +    I  + L +QGL+G+I + IS L                        ++L  LD
Sbjct: 413 STKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472

Query: 455 LSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAP 514
           LS N F GSIP+SL   + L+++ LN N L GRVP  L    +H  +F+ + N GLCG P
Sbjct: 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Query: 515 SLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLLVVY-ICCIRRGRN 561
            L +C        LS G KI I     V F  + LV+  +C  +R +N
Sbjct: 533 GLRAC-----GPHLSVGAKIGIAFGVSVAF--LFLVICAMCWWKRRQN 573

Length = 623
>gnl|CDD|221790 pfam12819, Malectin_like, Carbohydrate-binding protein of the ER Back     alignment and domain information
>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|221187 pfam11721, Malectin, Di-glucose binding within endoplasmic reticulum Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 608
PLN03150623 hypothetical protein; Provisional 100.0
PF12819347 Malectin_like: Carbohydrate-binding protein of the 100.0
PLN03150623 hypothetical protein; Provisional 99.86
PF11721174 Malectin: Di-glucose binding within endoplasmic re 99.65
PF11721174 Malectin: Di-glucose binding within endoplasmic re 99.55
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.25
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.25
PF12819347 Malectin_like: Carbohydrate-binding protein of the 98.94
KOG0472 565 consensus Leucine-rich repeat protein [Function un 98.51
KOG0617264 consensus Ras suppressor protein (contains leucine 98.5
KOG0617264 consensus Ras suppressor protein (contains leucine 98.46
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 98.36
KOG0472565 consensus Leucine-rich repeat protein [Function un 98.36
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 98.34
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 98.19
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 98.09
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 98.08
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 97.93
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 97.87
KOG4237 498 consensus Extracellular matrix protein slit, conta 97.86
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 97.8
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 97.77
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 97.68
KOG4237498 consensus Extracellular matrix protein slit, conta 97.68
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 97.61
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 97.58
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 97.52
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 97.46
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 97.43
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 97.25
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 97.13
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 97.1
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 97.07
KOG1259490 consensus Nischarin, modulator of integrin alpha5 97.07
KOG1259490 consensus Nischarin, modulator of integrin alpha5 96.91
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 96.82
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 96.77
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 96.67
PLN03210 1153 Resistant to P. syringae 6; Provisional 96.65
PLN03210 1153 Resistant to P. syringae 6; Provisional 96.48
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 96.42
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 96.38
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 96.2
PF0826343 LRRNT_2: Leucine rich repeat N-terminal domain; In 96.18
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 95.84
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 94.96
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 94.82
KOG3593355 consensus Predicted receptor-like serine/threonine 94.74
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 93.71
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 93.26
KOG0531 414 consensus Protein phosphatase 1, regulatory subuni 93.09
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 91.99
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 91.61
KOG2982 418 consensus Uncharacterized conserved protein [Funct 91.04
KOG3207505 consensus Beta-tubulin folding cofactor E [Posttra 90.56
KOG0531 414 consensus Protein phosphatase 1, regulatory subuni 89.16
KOG3593355 consensus Predicted receptor-like serine/threonine 88.98
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 88.97
KOG0473326 consensus Leucine-rich repeat protein [Function un 88.9
PF04478154 Mid2: Mid2 like cell wall stress sensor; InterPro: 87.85
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 87.24
COG5238 388 RNA1 Ran GTPase-activating protein (RanGAP) involv 86.65
KOG3207 505 consensus Beta-tubulin folding cofactor E [Posttra 85.37
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 85.12
smart0037026 LRR Leucine-rich repeats, outliers. 83.51
smart0036926 LRR_TYP Leucine-rich repeats, typical (most popula 83.51
smart0037026 LRR Leucine-rich repeats, outliers. 81.92
smart0036926 LRR_TYP Leucine-rich repeats, typical (most popula 81.92
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.2e-87  Score=755.23  Aligned_cols=551  Identities=34%  Similarity=0.602  Sum_probs=404.8

Q ss_pred             ccCCCCccEEEccCCCCCC-cCCCCceEeeCCCCeecCCcccccCCCCCCCCCCceeeecCCCCCCCccEEeecCCCcee
Q 007307           24 SSYPYKASYRIDCGSATST-TDPFNTTWQADDRYYTSGATSIVSEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRY  102 (608)
Q Consensus        24 ~~~~~~~~~~IdCG~~~~~-~d~~~~~w~~Dd~~~~~g~~~~~~~~~~~~~~~y~t~R~f~~~~~~~~cY~~~~~~~~~y  102 (608)
                      ++.|.+++|+||||+++++ +|.+||+|++|..+ .+|.....+.+ ....++|+|+|+||.++|+++||+||+.++|+|
T Consensus        18 ~~~~~~~~~~I~CGs~~~~~~d~~~~~w~~D~~~-~~~~~~~~~~~-~~~~~~~~t~R~F~~~~g~~~cY~~~~~~~g~y   95 (623)
T PLN03150         18 LASPEPFTMRISCGARVNVRTAPTNTLWYKDFAY-TGGIPANATRP-SFIAPPLKTLRYFPLSDGPENCYNINRVPKGHY   95 (623)
T ss_pred             cccCCCccEEEeCCCCCCcccCCCCCEEcCCccc-ccCccccccCc-ccccchhhccccCCcccccccceEeeecCCCcE
Confidence            3344567899999999877 67899999997544 43433333233 234578999999997678999999999899999


Q ss_pred             EEEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEeeCCeEEEEEeecCCCCceeeeeeeEec
Q 007307          103 YIRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFVKDGELDLCFYSFATDPPVIASLEVQQI  182 (608)
Q Consensus       103 liRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~l~v~f~~~~~~~pfIs~iEl~~l  182 (608)
                      +||+||+|||||+.++.|.|||++|++.|......+..  ....++||++++++++.++|||+|++.++||||+||||||
T Consensus        96 lVRl~F~~~~y~~~~~~~~Fdv~~~~~~~~tv~~~~~~--~~~~v~~E~i~~~~~~~l~vcf~~~~~~~pFIs~iEv~~l  173 (623)
T PLN03150         96 SVRVFFGLVAEPNFDSEPLFDVSVEGTQISSLKSGWSS--HDEQVFAEALVFLTDGSASICFHSTGHGDPAILSIEILQV  173 (623)
T ss_pred             EEEEEeecCCcCCCCCCCceEEEECcEEEEEEecCccc--CCCcEEEEEEEEecCCcEEEEEecCCCCCCceeEEEEEEc
Confidence            99999999999998788999999999776553322222  2456899999999999999999999999999999999999


Q ss_pred             CCCCCcccC-cCccceEEEeeeeccCCCCCCCCCcCCCCCC--CCCcCCCCCCCCCCCCCCceeeeccceeeCCCCCCCC
Q 007307          183 DPLSYDAAT-IGNNHILVNYGRLTSGSNQWGPGFSNDADDF--GRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNY  259 (608)
Q Consensus       183 ~~~~y~~~~-~~~~~~l~~~~R~n~G~~~~~~~~~~~~D~~--dR~W~~d~~~~~~~~~~~~~~i~t~~~i~~~~~~~~~  259 (608)
                      |+++|.... .+.+.+|+++||+||||....+.++|++|++  ||+|.+|++|...    .+..+++...|++++..|+.
T Consensus       174 ~~~~y~~~~~~~~~~~L~~~~R~n~G~~~~~~~~d~~~D~~~~dR~W~~d~~~~~~----~~~~~st~~~I~~~~~~~~~  249 (623)
T PLN03150        174 DDKAYNFGPSWGQGVILRTAKRLSCGAGKSKFDEDYSGDHWGGDRFWNRMQTFGSG----SDQAISTENVIKKASNAPNF  249 (623)
T ss_pred             CcccccccccccCceEEEEEEEEEecCcccccccCCCCCcccCccccCcCcccCCC----cccccccccccccccCCCcc
Confidence            999996432 2346679999999999876555578899999  9999999887732    34566777778766566778


Q ss_pred             ChHHHHHHHHccC---CceEEEEEecCCCcEEEEEEeeeccccccCCcceEEEEEECCe-eeceeeeecccCC-ccceee
Q 007307          260 YPMKLYQTAIVSS---GAIQYNLAVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDK-NVTRVDIFNSVGS-FAAYSW  334 (608)
Q Consensus       260 ~P~~V~~Ta~~~~---~~lt~~~~v~~~~~y~v~LhF~ei~~~~~~~~~r~F~V~in~~-~l~~~di~~~~g~-~~~~~~  334 (608)
                      +|+.||||||++.   .+++|.|+++++.+|+|||||||++......++|+|+|++||+ .+.++|+....|+ ..++++
T Consensus       250 ~P~~VyqTA~~~~~~~~~lty~~~v~~~~~Y~VrLhFaEi~~~~~~~~~R~F~V~ing~~~~~~~di~~~~g~~~~~~~~  329 (623)
T PLN03150        250 YPESLYQSALVSTDTQPDLSYTMDVDPNRNYSVWLHFAEIDNSITAEGKRVFDVLINGDTAFKDVDIVKMSGERYTALVL  329 (623)
T ss_pred             ChHHHhhhhccccCCCCceEEEeecCCCCCEEEEEEEEeccCccCCCceEEEEEEECCEEeecccChhhhcCCcccceEE
Confidence            9999999999984   4799999999999999999999997644456799999999998 5677888776655 456666


Q ss_pred             eeeEeecCCceEEEEecccchh-hHhhhhhcccccCCCCCCchHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCccCcce
Q 007307          335 HYVAKNLSSTELTVKLVPVVGA-ALISGLENYALVPNDLSTVPEQVIAMRALKESLRVPDRMGWNGDPCAPTNWDAWEGI  413 (608)
Q Consensus       335 ~~~~~~l~~n~L~~~l~~~~~~-piLnalEi~~~~~~~~~~~~~~~~~L~~lk~~~~~~~~~~w~~~pc~p~~~~~w~gv  413 (608)
                      ++.+. ..++.|+++|.+..++ |+|||+|||++.+.+..+.+.|+.+|+++|..+..+...+|+++||.|.. +.|.|+
T Consensus       330 ~~~v~-~~~g~l~isl~p~~~s~pilNaiEI~~~~~~~~~t~~~~~~aL~~~k~~~~~~~~~~W~g~~C~p~~-~~w~Gv  407 (623)
T PLN03150        330 NKTVA-VSGRTLTIVLQPKKGTHAIINAIEVFEIITAESKTLLEEVSALQTLKSSLGLPLRFGWNGDPCVPQQ-HPWSGA  407 (623)
T ss_pred             EeEEe-ecCCeEEEEEeeCCCCcceeeeeeeeeccccccccCchHHHHHHHHHHhcCCcccCCCCCCCCCCcc-cccccc
Confidence            65544 3457899999998776 99999999999998888999999999999998876654589999998775 689999


Q ss_pred             eecCCCCC------------------------ceeEEEEEEcCCCCCCCCCChhhcccccCCeecccCCcCCCCCCcccc
Q 007307          414 TCHPNKDE------------------------TAVVISQIDLGSQGLKGYISDKISLLSNLVNLDLSDNQFTGSIPDSLT  469 (608)
Q Consensus       414 ~c~~~~~~------------------------~~~~l~~L~Ls~n~l~g~ip~~~~~L~~L~~L~Ls~N~l~G~iP~~l~  469 (608)
                      .|......                        ...+|+.|+|++|+|+|.+|..++.|++|+.|+|++|+|+|.+|+.++
T Consensus       408 ~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~  487 (623)
T PLN03150        408 DCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG  487 (623)
T ss_pred             eeeccCCCCceEEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHh
Confidence            99632211                        112455666666666666666666666677777777777777777777


Q ss_pred             CCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCCCCCCCCCCCCCCccCCCCcccCceEEehhhHHHHHHHHHH
Q 007307          470 SSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAPSLPSCPLFWENGGLSKGGKIAIVILSLVLFSGVLL  549 (608)
Q Consensus       470 ~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~~p~~~~C~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~  549 (608)
                      +|++|+.|+|++|+|+|.+|..+......+..+++.+|+.+|+.|....|..     +.....+++++++++++++++++
T Consensus       488 ~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~~-----~~~~~~~i~~~~~~~~~~l~~~~  562 (623)
T PLN03150        488 QLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACGP-----HLSVGAKIGIAFGVSVAFLFLVI  562 (623)
T ss_pred             cCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCCCCCCcc-----cCCCceEEEEEhHHHHHHHHHHH
Confidence            7777777777777777777766655433455677788888888776667752     11223344555444433333333


Q ss_pred             HHHHhhhhcCCCCCCCCCcchhhhhhhhcchhhcccceEEEeccccc
Q 007307          550 VVYICCIRRGRNDYDFGLPQDLMSLSAKRNRYQRQKSLMLLEMESQH  596 (608)
Q Consensus       550 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~  596 (608)
                      ++++++++|++..+.       ..+.+.+.++++.++.+..|++..+
T Consensus       563 ~~~~~~~~r~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~  602 (623)
T PLN03150        563 CAMCWWKRRQNILRA-------QRIAAREAPYAKARTHFSRDVQMTR  602 (623)
T ss_pred             HHhhheeehhhhcch-------hhhhcccCcchhcccceeeeccchh
Confidence            333333333222111       0112223445555666666666544

>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan [] Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan Back     alignment and domain information
>PF11721 Malectin: Di-glucose binding within endoplasmic reticulum; InterPro: IPR021720 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>PF12819 Malectin_like: Carbohydrate-binding protein of the ER; InterPro: IPR024788 Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan [] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG3593 consensus Predicted receptor-like serine/threonine kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>KOG0473 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>smart00370 LRR Leucine-rich repeats, outliers Back     alignment and domain information
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily Back     alignment and domain information
>smart00370 LRR Leucine-rich repeats, outliers Back     alignment and domain information
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
2jwp_A174 Malectin, MGC80075; sugar binding, sugar binding p 3e-19
2jwp_A174 Malectin, MGC80075; sugar binding, sugar binding p 2e-11
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 1e-17
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 2e-13
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 3e-13
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 1e-11
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 1e-09
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 1e-08
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 2e-14
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 4e-14
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 2e-13
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 2e-12
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 4e-12
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 1e-11
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 3e-11
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 3e-11
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 1e-10
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 4e-10
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 9e-10
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 2e-09
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 2e-09
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 8e-09
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 5e-08
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 2e-07
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 2e-06
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 4e-04
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 5e-12
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 2e-07
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 1e-06
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 2e-06
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 4e-06
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 7e-06
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 8e-06
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 9e-06
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 1e-05
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 5e-05
4eco_A636 Uncharacterized protein; leucine-rich repeats, pro 7e-05
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 3e-10
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 1e-06
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 2e-06
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 3e-06
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 9e-06
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 1e-05
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 1e-05
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 5e-05
3fxi_A 605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 7e-05
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 1e-04
3fxi_A605 TLR4, htoll, TOLL-like receptor 4; leucine rich re 9e-04
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 2e-09
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 3e-06
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 7e-06
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 7e-06
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 2e-05
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 5e-05
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 1e-04
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 1e-04
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 1e-04
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 3e-04
4ecn_A876 Leucine-rich repeat protein; leucine-rich repeats, 7e-04
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 8e-04
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 3e-09
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 1e-06
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 3e-06
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 5e-06
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 1e-05
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 2e-05
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 2e-05
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 4e-05
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 5e-05
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 5e-05
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 7e-05
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 9e-05
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 1e-04
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 2e-04
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 3e-04
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 2e-07
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 8e-05
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 9e-05
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 2e-06
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 1e-04
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 3e-04
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 6e-04
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 8e-04
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 8e-04
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 4e-05
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 2e-04
3o53_A 317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 4e-04
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 4e-05
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 1e-04
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 2e-04
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 2e-04
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 5e-05
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 4e-04
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 5e-04
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 6e-05
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 2e-04
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 2e-04
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 3e-04
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 1e-04
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 5e-04
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 7e-04
4fmz_A347 Internalin; leucine rich repeat, structural genomi 1e-04
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 5e-04
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 7e-04
1jl5_A454 Outer protein YOPM; leucine-rich repeat, molecular 5e-04
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 7e-04
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174 Back     alignment and structure
 Score = 84.6 bits (209), Expect = 3e-19
 Identities = 30/159 (18%), Positives = 56/159 (35%), Gaps = 25/159 (15%)

Query: 220 DDFGRSWQSDAASRSPNAKSSIKSVTTRERITNTNQPPNYYPMKLYQTAIVSSGAIQYNL 279
           D  G  ++ D         S                  N     LYQT   +  +  Y++
Sbjct: 19  DVHGIHYRKDPLEGRVGRASDYGM-------KLPILRSNPEDQVLYQTERYNEDSFGYDI 71

Query: 280 AVDAKLDYLIWFHFAEIDSSVTKAGQRVFDILVNDKNVTR-VDIFNSVGSFAAYSWHYVA 338
            +  + +Y++   FAE+     ++ Q+VFD+ VN   V + +DIF+ VG   A+      
Sbjct: 72  PIKEEGEYVLVLKFAEVYF--AQSQQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPI 129

Query: 339 KNLSSTELTVKLVPVVGA--------------ALISGLE 363
            ++   +L+V+                       +  L 
Sbjct: 130 -SIKKGKLSVQGEVSTFTGKLSVEFVKGYYDNPKVCALF 167
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Length = 174 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query608
2jwp_A174 Malectin, MGC80075; sugar binding, sugar binding p 99.9
2jwp_A174 Malectin, MGC80075; sugar binding, sugar binding p 99.82
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.48
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 99.44
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 99.41
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 99.35
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 99.25
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.21
1w8a_A192 SLIT protein; signaling protein, secreted protein, 99.2
3rgz_A 768 Protein brassinosteroid insensitive 1; phytohormon 99.2
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.2
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.16
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 99.15
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.14
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.09
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 99.08
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.08
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 99.07
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 99.06
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 99.0
3e6j_A229 Variable lymphocyte receptor diversity region; var 98.98
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 98.98
3m19_A251 Variable lymphocyte receptor A diversity region; a 98.97
3m19_A251 Variable lymphocyte receptor A diversity region; a 98.96
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 98.96
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 98.94
2xot_A 361 Amphoterin-induced protein 1; cell adhesion, neuro 98.92
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 98.92
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 98.88
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 98.86
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 98.86
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.85
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.84
3v47_A 455 TOLL-like receptor 5B and variable lymphocyte REC 98.84
3zyi_A 452 Leucine-rich repeat-containing protein 4; cell adh 98.82
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.82
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 98.82
4g8a_A 635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 98.82
1w8a_A192 SLIT protein; signaling protein, secreted protein, 98.8
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 98.79
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.79
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 98.77
3zyi_A452 Leucine-rich repeat-containing protein 4; cell adh 98.77
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.77
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 98.77
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.77
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.77
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 98.76
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 98.74
2z80_A 353 TOLL-like receptor 2, variable lymphocyte recepto; 98.74
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 98.74
3zyj_A 440 Leucine-rich repeat-containing protein 4C; cell ad 98.74
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 98.73
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 98.72
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 98.72
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.71
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.7
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 98.69
3vq2_A 606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 98.68
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.67
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 98.66
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.66
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 98.65
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.65
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 98.61
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 98.6
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 98.6
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.59
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 98.58
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 98.58
3zyj_A440 Leucine-rich repeat-containing protein 4C; cell ad 98.57
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 98.57
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 98.56
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.55
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 98.54
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 98.53
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 98.53
1jl5_A 454 Outer protein YOPM; leucine-rich repeat, molecular 98.51
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 98.5
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 98.5
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 98.5
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 98.49
2xot_A361 Amphoterin-induced protein 1; cell adhesion, neuro 98.49
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 98.48
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.47
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 98.45
4ezg_A197 Putative uncharacterized protein; internalin-A, le 98.45
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 98.44
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.42
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 98.42
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 98.42
2id5_A477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 98.4
4ezg_A197 Putative uncharacterized protein; internalin-A, le 98.39
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 98.37
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 98.36
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 98.35
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 98.33
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 98.29
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 98.28
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 98.27
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 98.26
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 98.26
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 98.26
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 98.26
1jl5_A 454 Outer protein YOPM; leucine-rich repeat, molecular 98.25
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 98.25
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 98.25
3o6n_A390 APL1; leucine-rich repeat, protein binding; HET: N 98.24
3a79_B 562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 98.22
3bz5_A457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.22
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 98.22
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 98.22
3o6n_A 390 APL1; leucine-rich repeat, protein binding; HET: N 98.2
4ay9_X 350 Follicle-stimulating hormone receptor; hormone-rec 98.19
3bz5_A 457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 98.18
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 98.15
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 98.11
1o6v_A466 Internalin A; bacterial infection, extracellular r 98.06
4fmz_A347 Internalin; leucine rich repeat, structural genomi 98.06
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.04
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 98.03
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 98.03
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 98.0
4fmz_A347 Internalin; leucine rich repeat, structural genomi 97.95
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 97.95
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 97.93
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.92
4ay9_X 350 Follicle-stimulating hormone receptor; hormone-rec 97.9
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.85
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 97.85
1o6v_A466 Internalin A; bacterial infection, extracellular r 97.83
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 97.82
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 97.8
3goz_A 362 Leucine-rich repeat-containing protein; LEGL7, NES 97.74
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 97.67
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 97.66
3goz_A 362 Leucine-rich repeat-containing protein; LEGL7, NES 97.64
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 97.54
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 97.39
1z7x_W 461 Ribonuclease inhibitor; leucine-rich repeat, enzym 97.08
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 96.94
3un9_A372 NLR family member X1; leucine rich repeat (LRR), a 96.6
3ogk_B592 Coronatine-insensitive protein 1; leucine rich rep 96.35
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 96.34
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 96.21
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 95.98
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 95.96
2p1m_B594 Transport inhibitor response 1 protein; F-BOX, leu 95.83
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 95.77
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 95.29
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 94.6
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 94.18
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 92.87
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 92.3
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 89.34
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 88.55
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 85.32
2ks1_B44 Epidermal growth factor receptor; ERBB1, ERBB2, tr 83.0
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 82.66
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 82.53
2w3j_A145 Carbohydrate binding module; sugar-binding protein 82.43
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Back     alignment and structure
Probab=99.90  E-value=1.1e-23  Score=198.63  Aligned_cols=148  Identities=17%  Similarity=0.101  Sum_probs=113.2

Q ss_pred             ccEEEccCCCCCCcCCCCceEeeCCCCeecCCcccc------cCCCCCCCCCCceeeecCCCCCCCccEEeecCCCceeE
Q 007307           30 ASYRIDCGSATSTTDPFNTTWQADDRYYTSGATSIV------SEPLHFRFPHEKTLRYFPPSSGKKNCYIIPNLPPGRYY  103 (608)
Q Consensus        30 ~~~~IdCG~~~~~~d~~~~~w~~Dd~~~~~g~~~~~------~~~~~~~~~~y~t~R~f~~~~~~~~cY~~~~~~~~~yl  103 (608)
                      ..|+||||++. .+|..||+|.+|+.+...|.....      ......++.+|+|+|+|+.    ..+|.||+.++|+|+
T Consensus         6 ~~~~INcGg~~-~~d~~gr~w~~D~~~~~~g~~~~~~~~~~~~~~~~~~~~lY~TaR~~~~----~~tY~f~v~~~G~Y~   80 (174)
T 2jwp_A            6 VIWAVNAGGES-HVDVHGIHYRKDPLEGRVGRASDYGMKLPILRSNPEDQVLYQTERYNED----SFGYDIPIKEEGEYV   80 (174)
T ss_dssp             EEEEEEETSSS-EEETTTEEECSSCSSTTCCCCCCCCTTSCCSSSCHHHHHTTTCCCCCCS----CEEEEEECCSCEEEE
T ss_pred             EEEEEECCCCC-ccCCCCCEEcCCcCcccCCcccccccceEecccCCCCchhhhhhccCCC----CeEEEEEeCCCeEEE
Confidence            46999999875 457789999998765433322111      1111224568999999985    379999998889999


Q ss_pred             EEEEeecCCCCCCCCCCcEEEEECCEEEEecCCCCCcccCCCceEEEEEEEe-------------eCCeEEEEEeecCCC
Q 007307          104 IRTFTVYDNYDGKSHSPSFDVSVEGTLVFSWRSPWPEGLARDGAYSDLFAFV-------------KDGELDLCFYSFATD  170 (608)
Q Consensus       104 iRl~F~y~nyd~~~~~~~Fdv~~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~-------------~~~~l~v~f~~~~~~  170 (608)
                      |||||..-.|... ..+.|||+++|++++++||++.+++...++++|+.+.+             .++.|.|+|.|....
T Consensus        81 VrLhF~ei~~~~~-~~rvFdV~ing~~~l~~fdi~~~ag~~~~~~~~~~~~v~~~~l~i~~~~~~~~g~L~I~f~p~~~~  159 (174)
T 2jwp_A           81 LVLKFAEVYFAQS-QQKVFDVRVNGHTVVKDLDIFDRVGHSTAHDEIIPISIKKGKLSVQGEVSTFTGKLSVEFVKGYYD  159 (174)
T ss_dssp             EEEEEECCSCCCS-SSSCEEEEETTEEEEEEECHHHHHSSSSCEEEEEEEEEETTEEEETTEEEECCSEEEEEEECSSSC
T ss_pred             EEEEEeccccCCC-CCeEeEEEECCEEeecCcCHHHhhCCCeeEEEEEEEEEecCceeeeeeecccCCeEEEEEeccCCC
Confidence            9999976656553 47999999999999999998766555567888887653             567899999987667


Q ss_pred             CceeeeeeeEecC
Q 007307          171 PPVIASLEVQQID  183 (608)
Q Consensus       171 ~pfIs~iEl~~l~  183 (608)
                      .||||||||++-+
T Consensus       160 ~a~inaIEI~~~~  172 (174)
T 2jwp_A          160 NPKVCALFIMKGT  172 (174)
T ss_dssp             SSSEEEEEEESSC
T ss_pred             CcEEEEEEEEeCc
Confidence            8999999999753
>2jwp_A Malectin, MGC80075; sugar binding, sugar binding protein; NMR {Xenopus laevis} PDB: 2k46_A* 2kr2_A* Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens} Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 608
d1ogqa_313 c.10.2.8 (A:) Polygalacturonase inhibiting protein 6e-10
d1ogqa_ 313 c.10.2.8 (A:) Polygalacturonase inhibiting protein 2e-06
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 4e-06
d1z7xw1 460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 0.003
d1z7xw1460 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( 0.004
d2omza2384 c.10.2.1 (A:33-416) Internalin A {Listeria monocyt 3e-05
d2omza2384 c.10.2.1 (A:33-416) Internalin A {Listeria monocyt 0.003
d1jl5a_353 c.10.2.6 (A:) Leucine rich effector protein YopM { 9e-05
d1jl5a_353 c.10.2.6 (A:) Leucine rich effector protein YopM { 0.003
d1xwdc1242 c.10.2.7 (C:18-259) Follicle-stimulating hormone r 0.001
d1p9ag_266 c.10.2.7 (G:) von Willebrand factor binding domain 0.002
d1xkua_305 c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 0.004
d1h6ua2227 c.10.2.1 (A:36-262) Internalin H {Listeria monocyt 0.004
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 58.6 bits (140), Expect = 6e-10
 Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 27/125 (21%)

Query: 395 MGWNGDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKGYISDKISLLSNLVNLD 454
           + +  D        A   +     K   +  ++ +DL +  + G +   ++ L  L +L+
Sbjct: 215 VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLN 274

Query: 455 LSDNQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCGAP 514
           +S N   G IP    +  +                               + NK LCG+P
Sbjct: 275 VSFNNLCGEIP-QGGNLQRFD-------------------------VSAYANNKCLCGSP 308

Query: 515 SLPSC 519
            LP+C
Sbjct: 309 -LPAC 312
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query608
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.63
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.27
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.99
d1p9ag_266 von Willebrand factor binding domain of glycoprote 98.97
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.91
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 98.89
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.87
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 98.68
d1p9ag_266 von Willebrand factor binding domain of glycoprote 98.68
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 98.56
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.51
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 98.51
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 98.24
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 98.19
d2ifga3156 High affinity nerve growth factor receptor, N-term 98.1
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 98.08
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 97.97
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.97
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.81
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 97.67
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 97.64
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 97.63
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.55
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 97.53
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 97.53
d2omza2 384 Internalin A {Listeria monocytogenes [TaxId: 1639] 97.52
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 97.34
d1jl5a_ 353 Leucine rich effector protein YopM {Yersinia pesti 96.94
d2o14a1146 Hypothetical protein YxiM {Bacillus subtilis [TaxI 96.8
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 96.8
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 96.79
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 96.58
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 96.51
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 95.97
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 95.91
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 94.72
d1z7xw1460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 94.34
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 94.3
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 94.21
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 91.77
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 90.36
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.63  E-value=2.1e-16  Score=160.29  Aligned_cols=132  Identities=23%  Similarity=0.403  Sum_probs=108.8

Q ss_pred             CchHHHHHHHHHHHhcCCCCC-CCCC--CCCCCCCCCccCcceeecCCCCCceeEEEEEEcCCCCCCC--CCChhhcccc
Q 007307          374 TVPEQVIAMRALKESLRVPDR-MGWN--GDPCAPTNWDAWEGITCHPNKDETAVVISQIDLGSQGLKG--YISDKISLLS  448 (608)
Q Consensus       374 ~~~~~~~~L~~lk~~~~~~~~-~~w~--~~pc~p~~~~~w~gv~c~~~~~~~~~~l~~L~Ls~n~l~g--~ip~~~~~L~  448 (608)
                      ++|+|..||+++|+.+..+.. .+|.  +|+|.    +.|.||.|+....  ..+++.|+|++|+++|  .+|+++++|+
T Consensus         3 c~~~e~~aLl~~k~~~~~~~~l~sW~~~~d~C~----~~w~gv~C~~~~~--~~~v~~L~L~~~~l~g~~~lp~~l~~L~   76 (313)
T d1ogqa_           3 CNPQDKQALLQIKKDLGNPTTLSSWLPTTDCCN----RTWLGVLCDTDTQ--TYRVNNLDLSGLNLPKPYPIPSSLANLP   76 (313)
T ss_dssp             SCHHHHHHHHHHHHHTTCCGGGTTCCTTSCTTT----TCSTTEEECCSSS--CCCEEEEEEECCCCSSCEECCGGGGGCT
T ss_pred             CCHHHHHHHHHHHHHCCCCCcCCCCCCCCCCCC----CcCCCeEEeCCCC--cEEEEEEECCCCCCCCCCCCChHHhcCc
Confidence            579999999999999876653 4895  36663    4699999986432  2479999999999998  5899999999


Q ss_pred             cCCeecccC-CcCCCCCCccccCCCCCcEEEcccccccccCchhhhhccCCCCeEeecCCCCCCC
Q 007307          449 NLVNLDLSD-NQFTGSIPDSLTSSSKLQLVLLNNNLLEGRVPEELYSIGVHGGAFDLSGNKGLCG  512 (608)
Q Consensus       449 ~L~~L~Ls~-N~l~G~iP~~l~~l~~L~~L~Ls~N~l~G~iP~~l~~~~~~l~~l~l~~N~~~c~  512 (608)
                      +|++|+|++ |+++|.+|+++++|++|++|+|++|++.|..|..+..+. .++.++++.|...+.
T Consensus        77 ~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~-~L~~l~l~~N~~~~~  140 (313)
T d1ogqa_          77 YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK-TLVTLDFSYNALSGT  140 (313)
T ss_dssp             TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCT-TCCEEECCSSEEESC
T ss_pred             cccccccccccccccccccccccccccchhhhccccccccccccccchh-hhccccccccccccc
Confidence            999999996 899999999999999999999999999998887666553 566666666655543
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2o14a1 b.18.1.32 (A:14-159) Hypothetical protein YxiM {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure