Citrus Sinensis ID: 007320
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 608 | 2.2.26 [Sep-21-2011] | |||||||
| Q8W486 | 519 | Uncharacterized protein A | no | no | 0.672 | 0.788 | 0.312 | 4e-54 |
| >sp|Q8W486|Y1491_ARATH Uncharacterized protein At1g04910 OS=Arabidopsis thaliana GN=At1g04910 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 213 bits (542), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 149/477 (31%), Positives = 237/477 (49%), Gaps = 68/477 (14%)
Query: 139 TEKEFKPKKSDFWKEPYKQASSWKPCLTEDLQIQIGKHDESNGYIMVSANGGLNQQRVAI 198
E+ ++ KS W+ S W P E+NGY+ V NGGLNQQR AI
Sbjct: 59 VEELWESAKSGGWRPSSAPRSDWPP-----------PTKETNGYLRVRCNGGLNQQRSAI 107
Query: 199 CNAVAVASLLNATLVLPRFLYSNVWKDPSQFGDIYQEEYFISVLKHEVNIVKELPSPLKS 258
CNAV A ++NATLVLP ++ W D S F IY E+FI LK++V IV ++P K+
Sbjct: 108 CNAVLAARIMNATLVLPELDANSFWHDDSGFQGIYDVEHFIETLKYDVKIVGKIPDVHKN 167
Query: 259 IDIEAIGSLITDADIAKEAKPID-YVRKVLPILVRNGVVHFLGYGNRLGFDPLPSKLQRL 317
+ I + ++A PI+ Y+ L + + ++ + +RL + + QRL
Sbjct: 168 GKTKKIKAFQIRP--PRDA-PIEWYLTTALKAMREHSAIYLTPFSHRLAEEIDNPEYQRL 224
Query: 318 RCKCNFHALKFVPKIQEAASLLVRRIRKHDSARSMLDKQLLGNYMPNIPSKHHEVARGSY 377
RC+ N+HAL+F P I + + +V ++R S+ H
Sbjct: 225 RCRVNYHALRFKPHIMKLSESIVDKLR----------------------SQGH------- 255
Query: 378 RYLALHLRFEEDMVAYSQCDFGGGESERKELQAYREIHFPLLIERLKSSKPISPEELRKL 437
++++HLRFE DM+A++ C E+K L+ YR+ +F + K + E R +
Sbjct: 256 -FMSIHLRFEMDMLAFAGCFDIFNPEEQKILRKYRKENF--------ADKRLIYNERRAI 306
Query: 438 GRCPLTPEEAALLLSALGFKHGTYIYLAGSQIYGANSRMQAFTSLYPNLVTKETLLTPSE 497
G+CPLTPEE L+L A+ F + T IYLA +++G M+ F +L+P L + + PSE
Sbjct: 307 GKCPLTPEEVGLILRAMRFDNSTRIYLAAGELFGGEQFMKPFRTLFPRL-DNHSSVDPSE 365
Query: 498 LEPFRNFSSQLAALDFIACATADVFAMT-DSGSQLSSLVSGFRTYYGNGQAPTLRPNKKR 556
+ +A+D++ C +D+F T D S ++ + G R YYG T+RP++K
Sbjct: 366 ELSATSQGLIGSAVDYMVCLLSDIFMPTYDGPSNFANNLLGHRLYYGFRT--TIRPDRKA 423
Query: 557 LAAILSENSTIRWNDFEDRVRKMIEEG------QRVRVRGFGRSIYRQPRSPECMCR 607
LA I + FE+ VR+++ + +RV F + + PEC C+
Sbjct: 424 LAPIFIAREKGKRAGFEEAVRRVMLKTNFGGPHKRVSPESFYTNSW-----PECFCQ 475
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Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 608 | ||||||
| 297740522 | 629 | unnamed protein product [Vitis vinifera] | 0.993 | 0.960 | 0.743 | 0.0 | |
| 359483530 | 628 | PREDICTED: DUF246 domain-containing prot | 0.991 | 0.960 | 0.743 | 0.0 | |
| 188509983 | 599 | putative growth regulator [Gossypium arb | 0.957 | 0.971 | 0.724 | 0.0 | |
| 49333378 | 599 | putative growth regulator [Gossypium hir | 0.957 | 0.971 | 0.722 | 0.0 | |
| 49333394 | 598 | putative growth regulator [Gossypium hir | 0.955 | 0.971 | 0.719 | 0.0 | |
| 449500849 | 630 | PREDICTED: DUF246 domain-containing prot | 0.993 | 0.958 | 0.706 | 0.0 | |
| 449465012 | 630 | PREDICTED: DUF246 domain-containing prot | 0.993 | 0.958 | 0.706 | 0.0 | |
| 255562446 | 598 | conserved hypothetical protein [Ricinus | 0.949 | 0.964 | 0.727 | 0.0 | |
| 188509967 | 596 | putative growth regulator [Gossypioides | 0.955 | 0.974 | 0.711 | 0.0 | |
| 356546566 | 583 | PREDICTED: DUF246 domain-containing prot | 0.927 | 0.967 | 0.689 | 0.0 |
| >gi|297740522|emb|CBI30704.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 939 bits (2427), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/608 (74%), Positives = 522/608 (85%), Gaps = 4/608 (0%)
Query: 1 MKEYQIRRSENVPASDPSIGRRMSGGDHNWNSKVVLLNGLKSDSGKFSSSCKGAHVGKRH 60
MKEYQ R E +P SDPS+GRR+SGGD+NWN + +LL+GLK++ KF + CKG +VGK+H
Sbjct: 23 MKEYQGRCPETLPGSDPSLGRRISGGDYNWN-RNLLLHGLKNEPAKFGA-CKGVYVGKKH 80
Query: 61 MWFHKNVRSIAYIFVLVGFFFLLDSLMVSIFDSINLQHSSTSKNSKGLKDDRKVAHTNKE 120
WF K+VRS+ ++F L+GF FLLDSLMVSIFDS+NLQ SS S GLK+D+ ++ N+E
Sbjct: 81 TWFRKHVRSVVFMFGLMGFLFLLDSLMVSIFDSMNLQGSSAPIKSSGLKEDK--SYPNEE 138
Query: 121 KLPVKMYGRLLSLASSALTEKEFKPKKSDFWKEPYKQASSWKPCLTEDLQIQIGKHDESN 180
K PV MY RLL+LASSAL EKEFK +FW+EPY+ AS WKPC IGK ++SN
Sbjct: 139 KSPVLMYDRLLNLASSALAEKEFKQDSLNFWEEPYRHASVWKPCADRKSSKIIGKSEKSN 198
Query: 181 GYIMVSANGGLNQQRVAICNAVAVASLLNATLVLPRFLYSNVWKDPSQFGDIYQEEYFIS 240
G+++VSANGGLNQQRVAICNAVAVASLLNATLVLP+FLYSNVWKDPSQFGDIYQE+YFI+
Sbjct: 199 GFMLVSANGGLNQQRVAICNAVAVASLLNATLVLPKFLYSNVWKDPSQFGDIYQEDYFIN 258
Query: 241 VLKHEVNIVKELPSPLKSIDIEAIGSLITDADIAKEAKPIDYVRKVLPILVRNGVVHFLG 300
++K E+ IVKELP L+S+D+EAIGSLITDADI KEAKPI+YV+KVLP+L+RNGVVHFLG
Sbjct: 259 IMKDELEIVKELPPHLESLDMEAIGSLITDADIPKEAKPIEYVQKVLPLLLRNGVVHFLG 318
Query: 301 YGNRLGFDPLPSKLQRLRCKCNFHALKFVPKIQEAASLLVRRIRKHDSARSMLDKQLLGN 360
+GNRLGFDPLP KLQRLRCKCNFHALKFVPKIQ SLLV+RIRK+D+A+S LDKQLLGN
Sbjct: 319 FGNRLGFDPLPFKLQRLRCKCNFHALKFVPKIQRVGSLLVQRIRKYDAAKSRLDKQLLGN 378
Query: 361 YMPNIPSKHHEVARGSYRYLALHLRFEEDMVAYSQCDFGGGESERKELQAYREIHFPLLI 420
+M NIP K + G +YLALHLRFE DMVAYS C+FGGGE+E+KELQAYRE HFPLLI
Sbjct: 379 FMSNIPLKENHAEGGPSKYLALHLRFEVDMVAYSLCEFGGGENEQKELQAYRETHFPLLI 438
Query: 421 ERLKSSKPISPEELRKLGRCPLTPEEAALLLSALGFKHGTYIYLAGSQIYGANSRMQAFT 480
ERLK+ KP+SP + RKLG+CPLTPEEAAL+LS LGFK GTYIYLAGS IYG SRM FT
Sbjct: 439 ERLKNVKPVSPTQRRKLGKCPLTPEEAALVLSGLGFKRGTYIYLAGSHIYGGQSRMHPFT 498
Query: 481 SLYPNLVTKETLLTPSELEPFRNFSSQLAALDFIACATADVFAMTDSGSQLSSLVSGFRT 540
+LYPNLVTKE LL+P ELEPFRNFSSQLAALDFIACATADVFAMTDSGSQLSSLVSGFRT
Sbjct: 499 NLYPNLVTKEDLLSPGELEPFRNFSSQLAALDFIACATADVFAMTDSGSQLSSLVSGFRT 558
Query: 541 YYGNGQAPTLRPNKKRLAAILSENSTIRWNDFEDRVRKMIEEGQRVRVRGFGRSIYRQPR 600
YYG G+APTLRPNKKRLAAIL E+ TI W FE+RV+KMIEEGQRVRVRGFGRSIYRQPR
Sbjct: 559 YYGGGRAPTLRPNKKRLAAILMESRTIEWKSFEERVKKMIEEGQRVRVRGFGRSIYRQPR 618
Query: 601 SPECMCRT 608
P+CMC++
Sbjct: 619 CPQCMCKS 626
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483530|ref|XP_002265875.2| PREDICTED: DUF246 domain-containing protein At1g04910-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|188509983|gb|ACD56665.1| putative growth regulator [Gossypium arboreum] | Back alignment and taxonomy information |
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| >gi|49333378|gb|AAT64018.1| putative growth regulator [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|49333394|gb|AAT64033.1| putative growth regulator [Gossypium hirsutum] | Back alignment and taxonomy information |
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| >gi|449500849|ref|XP_004161210.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449465012|ref|XP_004150223.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|255562446|ref|XP_002522229.1| conserved hypothetical protein [Ricinus communis] gi|223538482|gb|EEF40087.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|188509967|gb|ACD56651.1| putative growth regulator [Gossypioides kirkii] | Back alignment and taxonomy information |
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| >gi|356546566|ref|XP_003541696.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 608 | ||||||
| TAIR|locus:2029984 | 611 | AT1G29200 [Arabidopsis thalian | 0.958 | 0.954 | 0.625 | 2.2e-192 | |
| TAIR|locus:2027129 | 652 | AT1G62330 [Arabidopsis thalian | 0.828 | 0.773 | 0.558 | 1.2e-153 | |
| TAIR|locus:2008935 | 590 | AT1G11990 [Arabidopsis thalian | 0.379 | 0.391 | 0.655 | 1.1e-148 | |
| TAIR|locus:2049527 | 567 | AT2G01480 [Arabidopsis thalian | 0.379 | 0.407 | 0.395 | 2.2e-82 | |
| TAIR|locus:2006852 | 562 | AT1G14970 [Arabidopsis thalian | 0.378 | 0.409 | 0.383 | 5.2e-79 | |
| TAIR|locus:2121909 | 519 | AT4G24530 [Arabidopsis thalian | 0.753 | 0.882 | 0.382 | 1.9e-76 | |
| TAIR|locus:2168297 | 504 | AT5G65470 [Arabidopsis thalian | 0.764 | 0.922 | 0.368 | 1.9e-76 | |
| TAIR|locus:2014666 | 568 | AT1G35510 [Arabidopsis thalian | 0.370 | 0.396 | 0.379 | 3.7e-76 | |
| TAIR|locus:2079281 | 557 | AT3G26370 [Arabidopsis thalian | 0.317 | 0.346 | 0.406 | 6.9e-73 | |
| TAIR|locus:1005716710 | 470 | AT1G38065 "AT1G38065" [Arabido | 0.368 | 0.476 | 0.372 | 3.2e-71 |
| TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1864 (661.2 bits), Expect = 2.2e-192, P = 2.2e-192
Identities = 379/606 (62%), Positives = 451/606 (74%)
Query: 7 RRS-ENVPASDPSIGRRMSGGDHNWNSKVVLLNGLKSDSGKFSSSCKGAHVGKRHMWFHK 65
RRS +++ +D +GRR+ + S+V G K D SS K+H W +
Sbjct: 23 RRSLDSLSGNDLLLGRRI------YASEVSKAQGSKHDQ---SSGSSNKFWKKQHSWLRR 73
Query: 66 NVRSIAYIFVLVGFFFLLDSLMVSIFDSINLQHSSTSKNSKGLKDDRKVAHTNK--EKLP 123
N +SI + + GF F +DS+MVSIF S + ++ L + H N + P
Sbjct: 74 NFKSIVLMISVTGFIFCMDSIMVSIFHS---DSRAVVQDISRLSN--MTLHKNGAVDASP 128
Query: 124 VKMYGRLLSLASSALTEKEFKPKKSDFWKEPYKQASSWKPCLTED-LQIQIGKHDE-SNG 181
V+MY RLL+LAS +L + EFKP +F +E ++S WKPC + + + + E SNG
Sbjct: 129 VQMYSRLLNLASDSLAKNEFKPDTPNFREERSSKSSQWKPCADNNKAAVALERSRELSNG 188
Query: 182 YIMVSANGGLNQQRVAICNAVAVASLLNATLVLPRFLYSNVWKDPSQFGDIYQEEYFISV 241
YIMVSANGGLNQQRVAICNAVAVA+LLNATLVLPRFLYSNVWKDPSQFGDIYQE++FI
Sbjct: 189 YIMVSANGGLNQQRVAICNAVAVAALLNATLVLPRFLYSNVWKDPSQFGDIYQEDHFIEY 248
Query: 242 LKHEVNIVKELPSPLKSIDIEAIGSLITDADIAKEAKPIDYVRKVLPILVRNGVVHFLGY 301
LK EVNIVK LP LKS D + + SL+TD ++ KEA P+DY+ VLP+L + G+VH GY
Sbjct: 249 LKDEVNIVKNLPQHLKSTDNKNL-SLVTDTELVKEATPVDYIEHVLPLLKKYGMVHLFGY 307
Query: 302 GNRLGFDPLPSKLQRLRCKCNFHALKFVPKIQEAASLLVRRIRKHDSARSMLDKQLLGNY 361
GNRLGFDPLP +QRLRCKCNFHALKF PKIQEA SLLV+RIR+ ++RS L++ LLG
Sbjct: 308 GNRLGFDPLPFDVQRLRCKCNFHALKFAPKIQEAGSLLVKRIRRFKTSRSRLEEALLGES 367
Query: 362 MPNIPSKHHEVARGSYRYLALHLRFEEDMVAYSQCDFGGGESERKELQAYREIHFPLLIE 421
M K E +YLALHLRFEEDMVAYS CDFGGGE+ERKELQAYRE HFPLL++
Sbjct: 368 MVKSTVKGEEEP---LKYLALHLRFEEDMVAYSLCDFGGGEAERKELQAYREDHFPLLLK 424
Query: 422 RLKSSKPISPEELRKLGRCPLTPEEAALLLSALGFKHGTYIYLAGSQIYGANSRMQAFTS 481
RLK SKP+SPEELRK G+CPLTPEEA L+L+ LGFK TYIYLAGSQIYG +SRM T
Sbjct: 425 RLKKSKPVSPEELRKTGKCPLTPEEATLVLAGLGFKRKTYIYLAGSQIYGGSSRMLPLTR 484
Query: 482 LYPNLVTKETLLTPSELEPFRNFSSQLAALDFIACATADVFAMTDSGSQLSSLVSGFRTY 541
LYPN+ TKETLLTP EL PF+NFSSQLAALDFIAC +DVFAMTDSGSQLSSLVSGFR Y
Sbjct: 485 LYPNIATKETLLTPQELAPFKNFSSQLAALDFIACIASDVFAMTDSGSQLSSLVSGFRNY 544
Query: 542 YGNGQAPTLRPNKKRLAAILSENSTIRWNDFEDRVRKMIEEGQRVRVRGFGRSIYRQPRS 601
YGNGQAPTLRPNKKRLAAILS++ TI+W FEDRVRKM+EEGQ++R R +GRSIYRQPR
Sbjct: 545 YGNGQAPTLRPNKKRLAAILSDSETIKWKIFEDRVRKMVEEGQKLRTRPYGRSIYRQPRC 604
Query: 602 PECMCR 607
PECMC+
Sbjct: 605 PECMCK 610
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| TAIR|locus:2027129 AT1G62330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2121909 AT4G24530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2079281 AT3G26370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:1005716710 AT1G38065 "AT1G38065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 608 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-133 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-107 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 7e-05 | |
| pfam00067 | 461 | pfam00067, p450, Cytochrome P450 | 3e-04 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 391 bits (1007), Expect = e-133
Identities = 152/365 (41%), Positives = 197/365 (53%), Gaps = 76/365 (20%)
Query: 182 YIMVSANGGLNQQRVAICNAVAVASLLNATLVLPRFLYSNVWKDPSQFGDIYQEEYFISV 241
Y++VSANGGLNQQR IC+AVAVA LLNATLVLP ++VW D S+FGDIY ++FI
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 242 LKHEVNIVKELPSPLKSIDIEAIGSLITDADIAKEAKPIDYVRKVLPILVRNGVVHFLGY 301
LK +V +VK+LP L S IT + + P Y+ +VLP+L ++GV+ +
Sbjct: 61 LKDDVRVVKKLPEELASKK-----PEITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPF 115
Query: 302 GNRLGFDPLPSKLQRLRCKCNFHALKFVPKIQEAASLLVRRIRKHDSARSMLDKQLLGNY 361
+RL D LP ++QRLRC+ NFHAL+FVP+I+E LV R+R+
Sbjct: 116 DSRLANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGG------------- 162
Query: 362 MPNIPSKHHEVARGSYRYLALHLRFEEDMVAYSQCDFGGGESERKELQAYREIHFPLLIE 421
+LALHLRFE+DM+A+S C
Sbjct: 163 ----------------PFLALHLRFEKDMLAFSGC------------------------- 181
Query: 422 RLKSSKPISPEELRKLGRCPLTPEEAALLLSALGFKHGTYIYLAGSQIYGANSRMQAFTS 481
G+CPLTPEE LLL ALGF T IYLA +IYG R+ S
Sbjct: 182 ----------------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRLDPLRS 225
Query: 482 LYPNLVTKETLLTPSELEPFRNFSSQLAALDFIACATADVFAMTDSGSQLSSLVSGFRTY 541
++PNL TKETL T EL PF SS+LAALD+I C +DVF T G + V+G R Y
Sbjct: 226 IFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGG-NFAKAVAGHRRY 284
Query: 542 YGNGQ 546
G+ +
Sbjct: 285 LGHRK 289
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|215689 pfam00067, p450, Cytochrome P450 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 608 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 96.11 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 91.61 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-57 Score=461.22 Aligned_cols=308 Identities=37% Similarity=0.596 Sum_probs=212.3
Q ss_pred ecCchhhHHHHHHHHHHHHHHhcCeEeecccccCcccCCCCC-----CCcccchHHHHHhcccccEEeccCCcccccchh
Q 007320 187 ANGGLNQQRVAICNAVAVASLLNATLVLPRFLYSNVWKDPSQ-----FGDIYQEEYFISVLKHEVNIVKELPSPLKSIDI 261 (608)
Q Consensus 187 ~nGGLNQqR~~IcDaVaVAriLNATLViP~l~~~s~WkD~S~-----F~DIFD~dhFI~~Lk~dVrIVk~LP~~~~~~~~ 261 (608)
+.||+||||+++++||++|++||+|||||.+.....|+|.++ |+++||+++|+++++++|.+.+.+|........
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 789999999999999999999999999999999999999987 999999999999999999999999876654322
Q ss_pred hhh------------------------cccccccccCC-ccChhhhHhhhhhhhhhc------ceEEEeccCCCCCCCCC
Q 007320 262 EAI------------------------GSLITDADIAK-EAKPIDYVRKVLPILVRN------GVVHFLGYGNRLGFDPL 310 (608)
Q Consensus 262 ~~~------------------------~~~i~~~~i~~-~ss~~~Y~~~VlP~L~k~------~VI~l~~f~~RLa~d~l 310 (608)
... .......+... ++.+.+|+++++|++.++ +|+.|.++..++..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 100 01111223333 788899999999999987 99999999999998888
Q ss_pred ChhhhhhhccccccccccchHHHHHHHHHHHHHHhcccccchhhhhhhcCCCCCCCCCccccccCCcceEEEeeccchhh
Q 007320 311 PSKLQRLRCKCNFHALKFVPKIQEAASLLVRRIRKHDSARSMLDKQLLGNYMPNIPSKHHEVARGSYRYLALHLRFEEDM 390 (608)
Q Consensus 311 P~~iQrLRCrvnF~ALrF~p~I~~lG~~LV~RLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~yvALHLRfE~DM 390 (608)
+.++|| +|+|+++|+++|+++|++++. ++++|||+|||+|+||
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~-----------------------------~~~~yiavHlR~~~D~ 208 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLA-----------------------------GGGPYIAVHLRRGKDW 208 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH---------------------------------SSEEEEEE--SHHH
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhc-----------------------------ccCceEEEeecccCch
Confidence 999988 999999999999999999993 2469999999999999
Q ss_pred hhhcccCCCCChhHHHHHHHHHHhhhhhHHHhhcCCCCCChHHHhcCCCCcCCHHHHHHHHHHcCCCCccEEEEEecccc
Q 007320 391 VAYSQCDFGGGESERKELQAYREIHFPLLIERLKSSKPISPEELRKLGRCPLTPEEAALLLSALGFKHGTYIYLAGSQIY 470 (608)
Q Consensus 391 lAfSgC~~ggg~~E~~eL~~~R~~~~~~~~~r~~~~k~i~~~~~R~~G~CPLTPeEvgl~LraLGf~~~T~IYLA~geiY 470 (608)
+++|.+++ ++..|+.+|.. ..+.+.+.+.+..+.||++|++++.+++++|+.+.|.||||++++|
T Consensus 209 --~~~C~~~~---~~~~~~~~~~~----------~~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~ 273 (351)
T PF10250_consen 209 --FSACEFKG---ERHLLASPRCW----------GKKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIY 273 (351)
T ss_dssp --HHHHCT-T-------TTTHHHH-----------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS--
T ss_pred --HhhcccCC---chHHHHHhHhh----------ccccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 89999954 77888888864 2345778889999999999999999999999999999999999999
Q ss_pred CcchhhHHHHHhCCCccccccCCCccccccccccccccchhheeeeecCceeeecCCCCchhhhhhhcccccCCCCCce
Q 007320 471 GANSRMQAFTSLYPNLVTKETLLTPSELEPFRNFSSQLAALDFIACATADVFAMTDSGSQLSSLVSGFRTYYGNGQAPT 549 (608)
Q Consensus 471 GG~~~l~pL~~~FPnl~tKesLas~eEL~pf~~~ss~lAALDYiVcl~SDVFv~t~~G~n~a~lV~GhR~y~g~g~~kT 549 (608)
||.+.|.+|+++||++++|+++.+.+|+++|.+ .++|+||++||++||+||+|. +|+|+.+|+++|.|.|.+++||
T Consensus 274 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~-~Stfs~~i~~~R~~~g~~~~~~ 349 (351)
T PF10250_consen 274 GGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTC-GSTFSSNIARERHYRGKPKRKS 349 (351)
T ss_dssp ---------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-T-T-HHHHHHHHHHHHSSSS---E
T ss_pred ccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecC-cchhHHHhhcccCcCCCCCCCC
Confidence 999999999999999999999999999999976 889999999999999999997 8789999999999999776555
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 608 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 6e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.4 bits (148), Expect = 6e-10
Identities = 78/526 (14%), Positives = 145/526 (27%), Gaps = 157/526 (29%)
Query: 81 FLLDSLMVS---IFDSINLQHSSTSKNSKGLKDDRKVAHTNKE---KLPV---KMYGRL- 130
F+ + L ++ + I + S ++ + R + + + K V + Y +L
Sbjct: 82 FVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141
Query: 131 --L--------------------SLASSALTEKEFKPKKSD--FWKEPYKQASSWKPCLT 166
L +A + + K FW K +S + L
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLE 200
Query: 167 --EDLQIQIGKHDESNGYIMVSANGGLNQQRVAI---------CNA------VAVASLLN 209
+ L QI + S + ++ + + N V A N
Sbjct: 201 MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 210 A------TLVLPR------FLYSNVWKDPSQ------FGDIYQEEYFISVLKHEVNIVKE 251
A L+ R FL + S + + L ++
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP---QD 317
Query: 252 LP------SPLKSIDIEAIGSLITD----------ADIAKEAKPIDYVRKVL-PILVRNG 294
LP +P + + I I D + K I+ VL P R
Sbjct: 318 LPREVLTTNPRR---LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK- 373
Query: 295 VVHFLGYGNRLG-FD---PLPSK-LQRLRCKCNFHALKFVPKIQEAASLLVRR------- 342
F +RL F +P+ L + + V SL+ ++
Sbjct: 374 --MF----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 343 -------IRKHDSARSMLDKQLLGNYMPNIPSKHH------EVARG-SYRYLALHL---- 384
++ L + ++ +Y NIP Y ++ HL
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHY--NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485
Query: 385 ---------------RFEEDMV---AYSQCDFGGGESERKELQAYRE-I--HFPLLIERL 423
RF E + + + G + ++L+ Y+ I + P +
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
Query: 424 KSSKPISPEELRKLGRCPLTPEEAALLLSALGFKHGTYIYLAGSQI 469
+ P+ L T LL AL + A Q+
Sbjct: 546 NAILDFLPKIEENLICSKYT----DLLRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 608 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.5 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 99.07 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 96.51 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 95.72 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2e-13 Score=143.64 Aligned_cols=303 Identities=18% Similarity=0.162 Sum_probs=165.0
Q ss_pred CCCCCcEEEEEec-C-chhhHHHHHHHHHHHHHHhcCe----EeecccccCcccCCC------CCCCcccchHHHHHhcc
Q 007320 176 HDESNGYIMVSAN-G-GLNQQRVAICNAVAVASLLNAT----LVLPRFLYSNVWKDP------SQFGDIYQEEYFISVLK 243 (608)
Q Consensus 176 ~~~snGYl~V~~n-G-GLNQqR~~IcDaVaVAriLNAT----LViP~l~~~s~WkD~------S~F~DIFD~dhFI~~Lk 243 (608)
+...++||+-..| | |.|.||...-.|.++|+.||.| ||||-+..-.-|+-. -.|++.||++.+-
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~---- 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN---- 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----
Confidence 3467999999875 4 8999999999999999999999 999976433335433 2699999998743
Q ss_pred cccEEe------ccC-Cc-------------ccc---cchhhhhcc-----cccccccCCccChhhhH------------
Q 007320 244 HEVNIV------KEL-PS-------------PLK---SIDIEAIGS-----LITDADIAKEAKPIDYV------------ 283 (608)
Q Consensus 244 ~dVrIV------k~L-P~-------------~~~---~~~~~~~~~-----~i~~~~i~~~ss~~~Y~------------ 283 (608)
..|.|+ +++ |. ... +.+...... ............|.|=.
T Consensus 94 ~~vpVI~meeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c~~ 173 (408)
T 4ap5_A 94 KNIPVIEYEQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSCLS 173 (408)
T ss_dssp TTSCEEEHHHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEEEE
T ss_pred hhCCeeEHHHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCceeEE
Confidence 333443 111 10 000 000000000 00000000000111111
Q ss_pred -----hhhhhhhhhcc---eEEEeccCCCCCCCCCChhhhhhhccccccccccchHHHHHHHHHHHHHHhcccccchhhh
Q 007320 284 -----RKVLPILVRNG---VVHFLGYGNRLGFDPLPSKLQRLRCKCNFHALKFVPKIQEAASLLVRRIRKHDSARSMLDK 355 (608)
Q Consensus 284 -----~~VlP~L~k~~---VI~l~~f~~RLa~d~lP~~iQrLRCrvnF~ALrF~p~I~~lG~~LV~RLR~~~~~~~~~~~ 355 (608)
..+-|.+.+.. -+-+..+...|+.-.-..+...+| ..|+|.+.|.+.|+..++..-..... ..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~~~----~~ 244 (408)
T 4ap5_A 174 VQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNSTDD----AD 244 (408)
T ss_dssp ECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCCTT----TT
T ss_pred EeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcccc----ee
Confidence 12234443321 222333434444111112333322 37999999999999988865432100 00
Q ss_pred hhhcCCCCCCCCCc--cccccCCcceEEEeeccchhhhhhcccCCCCChhHHHHHHHHHHhhhhhHHHhhcCCCCCChHH
Q 007320 356 QLLGNYMPNIPSKH--HEVARGSYRYLALHLRFEEDMVAYSQCDFGGGESERKELQAYREIHFPLLIERLKSSKPISPEE 433 (608)
Q Consensus 356 ~~~~~~~~~~~~~~--~~~~~~~g~yvALHLRfE~DMlAfSgC~~ggg~~E~~eL~~~R~~~~~~~~~r~~~~k~i~~~~ 433 (608)
.+.. ...|... ......+++|+++|+|-+.=+.++..|.-. .....+
T Consensus 245 h~r~---~~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps----~~~~~~------------------------ 293 (408)
T 4ap5_A 245 RIPF---QEDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS----LEGAVR------------------------ 293 (408)
T ss_dssp TCCC---CSSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----HHHHHH------------------------
T ss_pred eccc---chhHhhhhcccccccCCCccccccccccchhhhhccCCC----HHHHHH------------------------
Confidence 0000 0011100 011223579999999987433444444311 111111
Q ss_pred HhcCCCCcCCHHHHHHHHHHcCCCCccEEEEEeccccCcchhhHHHHHhCCCccccccCCCccccccccccccccchhhe
Q 007320 434 LRKLGRCPLTPEEAALLLSALGFKHGTYIYLAGSQIYGANSRMQAFTSLYPNLVTKETLLTPSELEPFRNFSSQLAALDF 513 (608)
Q Consensus 434 ~R~~G~CPLTPeEvgl~LraLGf~~~T~IYLA~geiYGG~~~l~pL~~~FPnl~tKesLas~eEL~pf~~~ss~lAALDY 513 (608)
.+.-+++.. +-+.||||+-+. +..+..|++.+|.++.-.. ..+++.++ ....+|.||-
T Consensus 294 ------------~i~~~~~~~---~~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~--~d~~~a~idq 351 (408)
T 4ap5_A 294 ------------KIRSLMKTH---RLDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELY--KDGGVAIIDQ 351 (408)
T ss_dssp ------------HHHHHHHHH---TCSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHH--HHHHHHHHHH
T ss_pred ------------HHHHHHHhc---CCCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhcc--CcchhhHHHH
Confidence 111222222 223499998753 4457889999998764322 23444444 2445789999
Q ss_pred eeeecCceeeecCCCCchhhhhhhcccccCCC
Q 007320 514 IACATADVFAMTDSGSQLSSLVSGFRTYYGNG 545 (608)
Q Consensus 514 iVcl~SDVFv~t~~G~n~a~lV~GhR~y~g~g 545 (608)
+||.+||+||+|. .|.|+..|.=.|-+.|..
T Consensus 352 ~Ic~~a~~FiGt~-~StfS~~I~~eR~~~G~~ 382 (408)
T 4ap5_A 352 WICAHARFFIGTS-VSTFSFRIHEEREILGLD 382 (408)
T ss_dssp HHHHTEEEEEBCT-TCHHHHHHHHHHHHHTBC
T ss_pred HHHHhCCeeEeCC-cCchhHHHHHHHHhcCCC
Confidence 9999999999987 668999999999999843
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00