Citrus Sinensis ID: 007321

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
MGASDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTPRVPHRFRET
ccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccHHcHHHHHHcccccccccccccccccc
cccccccccccccccccEcccccccccccHHHcccccEEEEEcccccccccccccccccccccccHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEccccccHHHHHHHHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccHHEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHccHHHHHHHHHHccHHcHcEEEEEEcccccccccccccccHHHHHHHHHHHccccccccHHcccc
mgasdpvveretqnkeeeegggegggeeevkdveKGEVVVEEKVVdsnsnvninningeqrgfnasmmqtlnptnplrivinggrrvtapriatpppsqpsrqapriatpppsqpsrprsistsppaptptpqqasrtalnskkytnKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICfqkpatdgvgVCFIAFAIGNGLYACWVSQRIGFCCKVLIISlqpvskfsdlnqptywmlGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQnlgsaclgslfvpTIEALRIVARGLnllegedeFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFErqemepivdsditssICFLTGVCSGCICVIVTAAwtakvhqpfTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVcyaqnpdnrlfdsTIKDRLSLMKagrdvvvptprvphrfret
mgasdpvveretqnkeeeegggegggeeevkdvekGEVVVeekvvdsnsnvninninGEQRGFNASMMQTLNPTNPLRIVINGGRRVTApriatpppsqpsrqapriatpppsqpsrprsistsppaptptpqqasrtalnSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMkagrdvvvptprvphrfret
MGASDPVVERETQNkeeeegggegggeeevkdvekgevvveekvvdsnsnvninninGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIatpppsqpsrqapriatpppsqpsrprsistsppaptptpqqasrtALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAAsllsislsfsWQKAVRVWPKFMVHFILWssfflslsAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTPRVPHRFRET
***************************************************************************PLRIVING*************************************************************YTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVV*************
*********************************************************************************************************************************************SKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLF*******************************
**********************************KGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIA**********************************************LNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTPRVPHRFRET
***********************************GEVVVEEKVVDSNSNVNI*******RGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPS***************************PAPTP*****SRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQG***********EKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTP*********
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MGASDPVVERETQNKEEEEGGGEGGGEEEVKDVEKGEVVVEEKVVDSNSNVNINNINGEQRGFNASMMQTLNPTNPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTPRVPHRFRET
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query608 2.2.26 [Sep-21-2011]
Q869R1555 CTL-like protein DDB_G027 yes no 0.424 0.464 0.245 1e-13
Q4PIP8602 Protein PNS1 OS=Ustilago N/A no 0.235 0.237 0.28 2e-13
Q4WYG7537 Protein pns1 OS=Neosartor yes no 0.304 0.344 0.252 1e-12
Q4I8E9538 Protein PNS1 OS=Gibberell yes no 0.322 0.364 0.241 3e-12
Q6CY85553 Protein PNS1 OS=Kluyverom yes no 0.230 0.253 0.303 2e-11
Q6BIV4513 Protein PNS1 OS=Debaryomy yes no 0.370 0.438 0.227 8e-11
P0CM92551 Protein PNS1 OS=Cryptococ yes no 0.718 0.793 0.221 1e-10
P0CM93551 Protein PNS1 OS=Cryptococ N/A no 0.718 0.793 0.221 1e-10
Q6C938571 Protein PNS1 OS=Yarrowia yes no 0.235 0.250 0.279 1e-09
Q75EG5553 Protein PNS1 OS=Ashbya go yes no 0.217 0.238 0.282 1e-08
>sp|Q869R1|CTLHB_DICDI CTL-like protein DDB_G0274487 OS=Dictyostelium discoideum GN=DDB_G0274487 PE=3 SV=1 Back     alignment and function desciption
 Score = 78.6 bits (192), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/281 (24%), Positives = 132/281 (46%), Gaps = 23/281 (8%)

Query: 253 VGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSF 312
           +G+ F   A    L+      RI F   +L  ++  + ++  + +  Y  +   F+W   
Sbjct: 239 LGIIFAIMAFFIILFYISCRSRIPFTATLLSNAVAIIKEYPSVIRAGYVSIFINFVWFIV 298

Query: 313 WILAVIGALNFYFPPL---IIIALVLSLAWTTEVMRNVVNLTVCRVISLYYI------LG 363
           W  A       Y   +   I I LV +L W   V++N ++ TV  +++ +Y       +G
Sbjct: 299 WGSAFARVNMVYTGAIQTCINIYLVFTLYWVFHVIKNTLHTTVSGLLATWYFCSGPNGVG 358

Query: 364 M-QSSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGL----NLLEGEDEFMFSCAH 418
           M  + T    +RALT + GS C GSL +  IE LR +++ +    N++     ++F   +
Sbjct: 359 MPHNPTLGSARRALTTSFGSICFGSLIISLIETLRYLSQMMINNRNVVVKIIGYIF---N 415

Query: 419 CCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLT 478
           C L ++ SI +  N +A+  +A YGK F  +++ T+ +FE +    I++ +   +   + 
Sbjct: 416 CILSMLSSIVQFFNTYAFTHVAIYGKSFCDSAKSTFTMFENRLGSTIINDNFVGTTIAIG 475

Query: 479 GVCSGCICVIVTAAWTAKVHQPFTATI--SLLTFIIGYLMV 517
           G+ +  +  I+ A     +  PF  ++    L   IGYL++
Sbjct: 476 GLVASLLLSILGAL----ISIPFDMSVYGGALALFIGYLVI 512

Dictyostelium discoideum (taxid: 44689)
>sp|Q4PIP8|PNS1_USTMA Protein PNS1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q4WYG7|PNS1_ASPFU Protein pns1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=pns1 PE=3 SV=1 Back     alignment and function description
>sp|Q4I8E9|PNS1_GIBZE Protein PNS1 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6CY85|PNS1_KLULA Protein PNS1 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6BIV4|PNS1_DEBHA Protein PNS1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=PNS1 PE=3 SV=2 Back     alignment and function description
>sp|P0CM92|PNS1_CRYNJ Protein PNS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|P0CM93|PNS1_CRYNB Protein PNS1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q6C938|PNS1_YARLI Protein PNS1 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=PNS1 PE=3 SV=1 Back     alignment and function description
>sp|Q75EG5|PNS1_ASHGO Protein PNS1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=PNS1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
255553428568 gd2b, putative [Ricinus communis] gi|223 0.851 0.911 0.673 0.0
356539148550 PREDICTED: protein PNS1-like [Glycine ma 0.901 0.996 0.663 0.0
225449991540 PREDICTED: protein PNS1 [Vitis vinifera] 0.876 0.987 0.634 0.0
224104107540 predicted protein [Populus trichocarpa] 0.863 0.972 0.648 0.0
449531655549 PREDICTED: CTL-like protein DDB_G0274487 0.866 0.959 0.663 0.0
449464020560 PREDICTED: CTL-like protein DDB_G0274487 0.866 0.941 0.663 0.0
357458339593 Protein PNS1 [Medicago truncatula] gi|35 0.893 0.915 0.643 0.0
22326789569 Plasma-membrane choline transporter fami 0.884 0.945 0.596 0.0
17064962569 Unknown protein [Arabidopsis thaliana] g 0.884 0.945 0.596 0.0
297807401564 hypothetical protein ARALYDRAFT_488199 [ 0.886 0.955 0.589 0.0
>gi|255553428|ref|XP_002517755.1| gd2b, putative [Ricinus communis] gi|223543027|gb|EEF44562.1| gd2b, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  787 bits (2032), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 398/591 (67%), Positives = 456/591 (77%), Gaps = 73/591 (12%)

Query: 26  GEEEVKDVEKGEVV-VEEKVVDSNSNVNI----------NNINGEQRGFNASMMQTLNPT 74
            E + +D+EKGE + ++EKV++  +NVN           ++ N ++   + SM+Q LNP+
Sbjct: 38  NERKERDLEKGEELGIKEKVIEDKNNVNNNNNSNNNNNGDHENDQRNNLHVSMLQRLNPS 97

Query: 75  NPLRIVINGGRRVTAPRIATPPPSQPSRQAPRIATPPPSQPSRPRSISTSPPAPTPTPQQ 134
           NPLRIVIN                     + R+A+P PSQ S PRS        TP PQ 
Sbjct: 98  NPLRIVIN--------------------NSTRVASPSPSQTSLPRS--------TPNPQ- 128

Query: 135 ASRTALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYL 194
            S T LNS++YTNKISLFLFVLHMILAIGLVGFL+FKGIQGL+ AS+S+KRKEKR+LKY 
Sbjct: 129 PSITTLNSRRYTNKISLFLFVLHMILAIGLVGFLIFKGIQGLLEASDSVKRKEKRILKYF 188

Query: 195 LPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGILLICFQKPATDGVG 254
           LPQVEAA+LLSI+L+  WQKAVRVWP+ MVHFILW SFF+SLSAGILLICFQK +TDGVG
Sbjct: 189 LPQVEAAALLSITLACVWQKAVRVWPRIMVHFILWCSFFMSLSAGILLICFQKASTDGVG 248

Query: 255 VCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWI 314
           VC IAFAIGNGLYACWV+QRI F  K+LI SL+PV KF DLN+PTYWMLG GF+WMS WI
Sbjct: 249 VCLIAFAIGNGLYACWVNQRIKFSTKILIKSLEPVPKFGDLNEPTYWMLGLGFVWMSLWI 308

Query: 315 LAVIGALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQR 374
           LAV+GA NF++PPLIIIALVLSLAW TEVMRNVVNLTV RVISLYY+ GMQ+STQFCFQR
Sbjct: 309 LAVVGASNFHYPPLIIIALVLSLAWVTEVMRNVVNLTVSRVISLYYLRGMQASTQFCFQR 368

Query: 375 ALTQNLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGW 434
           A+T+NLGSACLGS+FVP+IEALRIVARGLNLLEGEDEFMFSCAHCCL +M SIF+ GN W
Sbjct: 369 AVTRNLGSACLGSVFVPSIEALRIVARGLNLLEGEDEFMFSCAHCCLGVMNSIFKNGNSW 428

Query: 435 AYVQIAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWT 494
           AYVQIAAYGKGFVQASQDTW LF+RQ ME IVDSDITSSICFLTGVCSG ICVI+ AAWT
Sbjct: 429 AYVQIAAYGKGFVQASQDTWELFKRQNMEIIVDSDITSSICFLTGVCSGSICVILVAAWT 488

Query: 495 AKVHQPFTATISLLTFIIGYLMVSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAM 554
             VH+PFTAT+SLL F IGYLM                                  RIAM
Sbjct: 489 HTVHEPFTATLSLLAFFIGYLM---------------------------------ARIAM 515

Query: 555 ALPQACVSCYYVCYAQNPDNRLFDSTIKDRLSLMKAGRDVVVPTPRVPHRF 605
           A+P ACVSCYYVCYA+NP+NRLFD+TIKDR   +K+G DVVVPTPRVPHRF
Sbjct: 516 AVPHACVSCYYVCYAENPENRLFDTTIKDRQERIKSGHDVVVPTPRVPHRF 566

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356539148|ref|XP_003538062.1| PREDICTED: protein PNS1-like [Glycine max] Back     alignment and taxonomy information
>gi|225449991|ref|XP_002273748.1| PREDICTED: protein PNS1 [Vitis vinifera] gi|297736338|emb|CBI24976.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224104107|ref|XP_002313322.1| predicted protein [Populus trichocarpa] gi|222849730|gb|EEE87277.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449531655|ref|XP_004172801.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449464020|ref|XP_004149727.1| PREDICTED: CTL-like protein DDB_G0274487-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|357458339|ref|XP_003599450.1| Protein PNS1 [Medicago truncatula] gi|355488498|gb|AES69701.1| Protein PNS1 [Medicago truncatula] Back     alignment and taxonomy information
>gi|22326789|ref|NP_196880.2| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] gi|332004555|gb|AED91938.1| Plasma-membrane choline transporter family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|17064962|gb|AAL32635.1| Unknown protein [Arabidopsis thaliana] gi|21387171|gb|AAM47989.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297807401|ref|XP_002871584.1| hypothetical protein ARALYDRAFT_488199 [Arabidopsis lyrata subsp. lyrata] gi|297317421|gb|EFH47843.1| hypothetical protein ARALYDRAFT_488199 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query608
TAIR|locus:2177110569 AT5G13760 "AT5G13760" [Arabido 0.631 0.674 0.712 3.9e-177
TAIR|locus:2079444482 AT3G03700 [Arabidopsis thalian 0.595 0.751 0.294 1.6e-49
TAIR|locus:2100865482 AT3G04440 [Arabidopsis thalian 0.595 0.751 0.294 1.6e-49
TAIR|locus:2175961474 AT5G17830 "AT5G17830" [Arabido 0.511 0.656 0.260 4.6e-26
TAIR|locus:2031235488 AT1G25500 [Arabidopsis thalian 0.425 0.530 0.266 9.1e-19
DICTYBASE|DDB_G0274487555 DDB_G0274487 "Protein PNS1" [D 0.424 0.464 0.245 1.2e-14
ASPGD|ASPL0000039512533 AN10377 [Emericella nidulans ( 0.304 0.347 0.242 2.3e-11
UNIPROTKB|F1P6W3344 SLC44A5 "Uncharacterized prote 0.256 0.453 0.288 6.8e-09
UNIPROTKB|F1S9Q9678 SLC44A5 "Uncharacterized prote 0.261 0.234 0.277 2.5e-08
UNIPROTKB|F1P6W2705 SLC44A5 "Uncharacterized prote 0.256 0.221 0.288 2.6e-08
TAIR|locus:2177110 AT5G13760 "AT5G13760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1496 (531.7 bits), Expect = 3.9e-177, Sum P(3) = 3.9e-177
 Identities = 275/386 (71%), Positives = 322/386 (83%)

Query:   139 ALNSKKYTNKISLFLFVLHMILAIGLVGFLVFKGIQGLILASESIKRKEKRVLKYLLPQV 198
             +LNS KYTNK  L LF+ H ++AIG VGFLVF+G+QGLI ++ S+KRKEK++L++LLPQV
Sbjct:   133 SLNSTKYTNKFFLLLFIFHKVVAIGFVGFLVFRGVQGLIGSNGSVKRKEKKILRFLLPQV 192

Query:   199 EAAXXXXXXXXXXWQKAVRVWPKFMVHFILWXXXXXXXXAGILLICFQKPATDGVGVCFI 258
             EAA          WQ A R+WP FM+HFILW        +GILL+CFQ PATD VGVC I
Sbjct:   193 EAASLLSIILAFLWQMAFRIWPDFMIHFILWSTFLMSLSSGILLLCFQMPATDAVGVCLI 252

Query:   259 AFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVI 318
             AF+IGNGLYACWV++RI FC K+L+ SL+PVSKFSDLN PTY+ML  GFLWMS WI  VI
Sbjct:   253 AFSIGNGLYACWVTRRIKFCSKILVKSLEPVSKFSDLNLPTYYMLAAGFLWMSMWIFGVI 312

Query:   319 GALNFYFPPLIIIALVLSLAWTTEVMRNVVNLTVCRVISLYYILGMQSSTQFCFQRALTQ 378
             GALNFYFPPL+II LVLSLAWTTEVMRN+VNLTV RVI+LYY+ GMQSST+F FQRAL++
Sbjct:   313 GALNFYFPPLVIIGLVLSLAWTTEVMRNIVNLTVSRVIALYYLRGMQSSTRFSFQRALSR 372

Query:   379 NLGSACLGSLFVPTIEALRIVARGLNLLEGEDEFMFSCAHCCLRIMESIFRCGNGWAYVQ 438
             NLGSACLGSLFVPTIEALRI+ARGLNLL+GEDEFMF CA+CCLR+M+ IF  GNGWA+VQ
Sbjct:   373 NLGSACLGSLFVPTIEALRILARGLNLLKGEDEFMFCCANCCLRLMDFIFEHGNGWAFVQ 432

Query:   439 IAAYGKGFVQASQDTWALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVH 498
             IAAYGKGFV+ASQDTW LFE ++M  IVD+DITSSICFLTG+CSGC+C+IV AAWT  V+
Sbjct:   433 IAAYGKGFVRASQDTWKLFEDEDMVEIVDADITSSICFLTGICSGCVCLIVAAAWTHTVY 492

Query:   499 QPFTATISLLTFIIGYLM--VSFPFP 522
             +PFTATISLL F IGYLM  +S   P
Sbjct:   493 KPFTATISLLAFFIGYLMTRISMALP 518
GO:0003674 "molecular_function" evidence=ND
GO:0005886 "plasma membrane" evidence=ISM
GO:0019344 "cysteine biosynthetic process" evidence=RCA
TAIR|locus:2079444 AT3G03700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100865 AT3G04440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175961 AT5G17830 "AT5G17830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2031235 AT1G25500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0274487 DDB_G0274487 "Protein PNS1" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ASPGD|ASPL0000039512 AN10377 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6W3 SLC44A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1S9Q9 SLC44A5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1P6W2 SLC44A5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
pfam04515327 pfam04515, Choline_transpo, Plasma-membrane cholin 4e-62
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 1e-04
PHA03307 1352 PHA03307, PHA03307, transcriptional regulator ICP4 7e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 8e-04
pfam05793528 pfam05793, TFIIF_alpha, Transcription initiation f 8e-04
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 0.003
PHA03378991 PHA03378, PHA03378, EBNA-3B; Provisional 0.003
PLN02983274 PLN02983, PLN02983, biotin carboxyl carrier protei 0.003
PRK14965576 PRK14965, PRK14965, DNA polymerase III subunits ga 0.004
PHA03291401 PHA03291, PHA03291, envelope glycoprotein I; Provi 0.004
>gnl|CDD|218122 pfam04515, Choline_transpo, Plasma-membrane choline transporter Back     alignment and domain information 
 Score =  208 bits (531), Expect = 4e-62
 Identities = 80/360 (22%), Positives = 139/360 (38%), Gaps = 68/360 (18%)

Query: 255 VCFIAFAIGNGLYACW---VSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMS 311
           +  I F +   +       + +RI     +L  +   VSK   L             +++
Sbjct: 1   IVAIIFTVLTLILLLLIIFLRKRIPLAIALLKTASDAVSKNPSLLLVPLITFLALAAFIA 60

Query: 312 FWILAVIGALNFY-------------------FPPLIIIALVLSLAWTTEVMRNVVNLTV 352
            WI+  +                             +++ L+  L WT+EV+  V ++T+
Sbjct: 61  LWIVVAVALYTSGDPKYNNGGCPTGGEYKYDSKLIGLLVYLLFGLFWTSEVILAVQHVTI 120

Query: 353 CRVISLYYILGMQ-----SSTQFCFQRALTQNLGSACLGSLFVPTIEALRIVARGLNLLE 407
             V++ +Y  G +       T   F+RALT + GS C GSL V  I+ +RI+   L    
Sbjct: 121 AGVVATWYFAGGKRNMPKFPTLSSFKRALTYSFGSICFGSLIVAIIQFIRILLEYLRRKL 180

Query: 408 GEDE-----FMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTWALFERQEM 462
             D+     F+  C  CCL  +E      N  AYV IA YGKGF  +++DTW L +R  +
Sbjct: 181 KGDQNKFAKFLLCCLKCCLWCLEKFVEYLNRNAYVHIAIYGKGFCTSAKDTWELLKRNGL 240

Query: 463 EPIVDSDITSSICFLTGVCSGCICVIVTAAW---TAKVHQPFTATISLLTFIIGYLMVSF 519
             +V+  +   + FL  +    +  ++   W   T      + A    L F+I YL+   
Sbjct: 241 RALVNDGLGGFVLFLGKLFVSALTGLLAYLWLTYTDNSDLSYYAVPVALAFLISYLI--- 297

Query: 520 PFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDS 579
                                           + M++ ++ V   +VC+A++P+    D 
Sbjct: 298 ------------------------------ASVFMSVYESGVDTIFVCFAEDPELLRNDG 327

This family represents a high-affinity plasma-membrane choline transporter in C.elegans which is thought to be rate-limiting for ACh synthesis in cholinergic nerve terminals. Length = 327
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional Back     alignment and domain information
>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 608
KOG1362577 consensus Choline transporter-like protein [Lipid 100.0
PF04515334 Choline_transpo: Plasma-membrane choline transport 100.0
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.27
KOG19241102 consensus RhoA GTPase effector DIA/Diaphanous [Sig 98.07
PRK153192039 AIDA autotransporter-like protein ShdA; Provisiona 95.42
KOG4672487 consensus Uncharacterized conserved low complexity 95.31
KOG4672487 consensus Uncharacterized conserved low complexity 94.72
PHA032473151 large tegument protein UL36; Provisional 93.16
KOG4849498 consensus mRNA cleavage factor I subunit/CPSF subu 93.12
KOG0559457 consensus Dihydrolipoamide succinyltransferase (2- 92.48
KOG3671569 consensus Actin regulatory protein (Wiskott-Aldric 92.45
PRK097521250 adhesin; Provisional 92.19
PF11081187 DUF2890: Protein of unknown function (DUF2890); In 90.15
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 89.8
PRK15313955 autotransport protein MisL; Provisional 89.01
COG5178 2365 PRP8 U5 snRNP spliceosome subunit [RNA processing 88.8
KOG1830518 consensus Wiskott Aldrich syndrome proteins [Cytos 88.59
KOG2675480 consensus Adenylate cyclase-associated protein (CA 87.07
KOG0917338 consensus Uncharacterized conserved protein [Funct 85.21
PF09026101 CENP-B_dimeris: Centromere protein B dimerisation 83.18
KOG2236483 consensus Uncharacterized conserved protein [Funct 81.57
>KOG1362 consensus Choline transporter-like protein [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-63  Score=552.59  Aligned_cols=359  Identities=23%  Similarity=0.440  Sum_probs=289.9

Q ss_pred             hhhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHHHH--HHhhccC------C-----c---
Q 007321          187 EKRVLKYLLPQVEAASLLSISLSFSWQKAVRVWPKFMVHFILWSSFFLSLSAGIL--LICFQKP------A-----T---  250 (608)
Q Consensus       187 ~~~dl~~~~~~i~~~~~is~vls~~wl~LLR~~~r~li~~~vw~~iil~i~~~i~--~~~~~~~------~-----~---  250 (608)
                      ...|+..+|+.++..+.++++++++|+.++|++++.    ++|+.+++.+...++  ..|+..+      .     +   
T Consensus       141 i~~~i~~sw~~i~~~~~~~l~~s~i~~~~lr~~~~~----l~~~~~~~~l~~l~~~~~~~~~~y~~~~~~~~~i~~~~~~  216 (577)
T KOG1362|consen  141 IFADILRSWYTILSLLGIALVLSLIFTKLLRFLAAI----LPWILIILVLVGLLSGIWFCWFLYAILRNTKVTIGFTSSL  216 (577)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhhhhccccceeecchHH
Confidence            667899999999999999999999999999976664    467666655544332  1222110      0     0   


Q ss_pred             -----------hhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhHhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 007321          251 -----------DGVGVCFIAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYWMLGTGFLWMSFWILAVIG  319 (608)
Q Consensus       251 -----------~~~~i~~~i~aii~~ly~~~~r~RI~~aiaiLk~As~~i~~~p~L~~~~i~~~ii~~~~~~~W~~~~iG  319 (608)
                                 +..+|+..++.++.++|++++|+||+++++++|+|+|++.+.|+++++|++++++.++|+++|+...++
T Consensus       217 ~~~~~~~~~~l~~~~Iv~~v~~vv~~l~~i~lr~RI~~a~all~ea~k~i~~~p~~~~~p~~~~~v~~~~i~~wv~~~~~  296 (577)
T KOG1362|consen  217 FVAVGNQLTLLDAVGIVLTVISVVLVLYIIFLRKRIPLAIALLKEATKAIGSLPSTLFPPALTFFVLLLFISLWVFVALF  296 (577)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       136888888888888899999999999999999999999999999999999999999999999988762


Q ss_pred             c--cc--------ccCch----HHHHHHHHH-HHHHHHHHhhcccccccceEEEEeecCCC-----ccHHHHHHHHHhhc
Q 007321          320 A--LN--------FYFPP----LIIIALVLS-LAWTTEVMRNVVNLTVCRVISLYYILGMQ-----SSTQFCFQRALTQN  379 (608)
Q Consensus       320 ~--~~--------~~~~~----~~~~~~lf~-~~Wt~~fi~~v~~~tvAgvva~WYF~~~~-----~pv~~S~~ra~tyh  379 (608)
                      -  .+        ..|++    .+++++++. ++|+++|+.|++|+++||++++|||++++     .|+..|++|+++||
T Consensus       297 l~t~~~~~~gg~~~~~~~~~~~~~~~~~vv~~l~Wt~~fi~a~q~~vISgava~~Yf~~~~~~iP~~p~~~al~ra~~yh  376 (577)
T KOG1362|consen  297 LVTSGPNSEGGCACTYSGGSLRILFWLLVVGSLIWTSEFILALQQVVISGAVASWYFARDKQDIPSSPLFSALRRALRYH  376 (577)
T ss_pred             HhhcccccCCCceeeccCCcchhHhHHHHHHHHHHHHHHHHHHHHHhhhhhhheeeEecCCCCCCCchHHHHHHHHHHHh
Confidence            2  11        22322    366667776 99999999999999999999999997543     68999999999999


Q ss_pred             hhhHHhhhhhHHHHHHHHHHHHHhhh-ccCC----CchhHHhHHHHHHHHHHHHHhhhhhHHHHHhhcCCchhHhHHHHH
Q 007321          380 LGSACLGSLFVPTIEALRIVARGLNL-LEGE----DEFMFSCAHCCLRIMESIFRCGNGWAYVQIAAYGKGFVQASQDTW  454 (608)
Q Consensus       380 fGSIcfGSLIvaiI~~lR~il~~l~~-~~~~----~~~l~~c~~C~l~cle~~l~yiNk~AyI~iAI~G~~F~~SAk~a~  454 (608)
                      +||+|+|||++++|+++|.++|++++ +++.    .++++||++||+||+|++++|+|||||+|+|||||+||+||||||
T Consensus       377 lGSi~~GSliv~iV~i~R~iL~~i~~~lk~~~~~~~~~~~~c~~Cc~w~le~~i~~lNrnAYi~iAiyGk~Fc~SAkda~  456 (577)
T KOG1362|consen  377 LGSICFGSLLVALVRILRVILRYIRHKLKGSQNAAARILLMCLKCCFWCLEKFIKFLNRNAYVMIAIYGKNFCTSAKDAW  456 (577)
T ss_pred             ccchhhhhhHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHhcCcchheeeeccCccchHHHHHHH
Confidence            99999999999999999999999986 4443    369999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCchhhccchhhHHHHHhhhhHHHHHHHHHHHHHhhccCCC--chhHHHHHHHHHh-hhcccccccchhhhhhcc
Q 007321          455 ALFERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQP--FTATISLLTFIIG-YLMVSFPFPISLIALSFQ  531 (608)
Q Consensus       455 ~Ll~rn~~~alVnd~l~~~vLfLgkl~vg~i~~l~~~~~~~~~~~~--~~~~p~l~~flIg-y~i~s~~~~~~s~~~~~~  531 (608)
                      +|++||..+....|.++++++|+||++++ +++.++..|....+++  ++..+.++++++| |+|               
T Consensus       457 ~ll~~Nv~~vv~~d~vs~~llflgk~l~~-~~~g~~g~~~l~~~~~~l~~y~V~lla~iig~ylI---------------  520 (577)
T KOG1362|consen  457 ELLRRNVLRVVDVDLVSDFLLFLGKLLGA-IGSGVAGIWLLIGRKDVLYYYVVPLLAFIIGAYLI---------------  520 (577)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcceeEeHHHHHHHHHHHHH---------------
Confidence            99999944444444466677777776665 4444444454444544  3345557788888 999               


Q ss_pred             cccchhhhhhhhhcccccccccchhhhHHHHHHHHhhcccCCCccccccchH
Q 007321          532 HGYSLISMIDLFINATPQTRIAMALPQACVSCYYVCYAQNPDNRLFDSTIKD  583 (608)
Q Consensus       532 ~gf~~~~~~~~~~~~~~~~~~~~~v~~s~VdTifvCfaeDpe~~~~~~~~p~  583 (608)
                                        ++++++|++|||||+|+||+||||+...+.+.|.
T Consensus       521 ------------------a~~f~~v~~m~VdtlflCf~eD~e~n~gs~~~p~  554 (577)
T KOG1362|consen  521 ------------------AHIFFSVLEMCVDTLFLCFAEDPESNDGSPEKPQ  554 (577)
T ss_pred             ------------------HHHHHHHHHHHHHHhhheeEecHhhcCCCCCcce
Confidence                              8999999999999999999999997444433443

>PF04515 Choline_transpo: Plasma-membrane choline transporter; InterPro: IPR007603 This entry represents a family of proteins probably involved in transport through the plasma membrane [] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional Back     alignment and domain information
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown] Back     alignment and domain information
>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown] Back     alignment and domain information
>PHA03247 large tegument protein UL36; Provisional Back     alignment and domain information
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification] Back     alignment and domain information
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] Back     alignment and domain information
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PRK09752 adhesin; Provisional Back     alignment and domain information
>PF11081 DUF2890: Protein of unknown function (DUF2890); InterPro: IPR021304 This entry contains the 33kDa and 22kDa phosphoproteins from vertebrate adenoviruses Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>PRK15313 autotransport protein MisL; Provisional Back     alignment and domain information
>COG5178 PRP8 U5 snRNP spliceosome subunit [RNA processing and modification] Back     alignment and domain information
>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton] Back     alignment and domain information
>KOG2675 consensus Adenylate cyclase-associated protein (CAP/Srv2p) [Cytoskeleton; Signal transduction mechanisms] Back     alignment and domain information
>KOG0917 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF09026 CENP-B_dimeris: Centromere protein B dimerisation domain; InterPro: IPR015115 Centromere protein B (CENP-B) interacts with centromeric heterochromatin in chromosomes and binds to a specific subset of alphoid satellite DNA, called the CENP-B box Back     alignment and domain information
>KOG2236 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query608
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 42.9 bits (100), Expect = 3e-04
 Identities = 50/357 (14%), Positives = 107/357 (29%), Gaps = 91/357 (25%)

Query: 252 GVG-------VCF---IAFAIGNGLYACWVSQRIGFCCKVLIISLQPVSKFSDLNQPTYW 301
           G G       VC    +   +   ++  W++  +  C     + L+ + K      P + 
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIF--WLN--LKNCNSPETV-LEMLQKLLYQIDPNWT 214

Query: 302 MLGTGFLWMSFWILAVIGALNFYF--PPLIIIALVLSLAWTTEVMRNVVNLTVCRVI--- 356
                   +   I ++   L       P     LVL      +   N  NL+ C+++   
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-NAFNLS-CKILLTT 272

Query: 357 ---SLYYILGMQSSTQFC-------FQRALTQNLGSACLGSLFVPTIEALRIVARGLNLL 406
               +   L   ++T                ++L    L        + L       N  
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC----RPQDLPREVLTTNPR 328

Query: 407 EGEDEFMFSCAHCCLRIMESIFRCG----NGWAYVQIAAYGKGFVQAS------QDTWAL 456
                         + I ESI R G    + W +V         +++S       +   +
Sbjct: 329 -----------RLSI-IAESI-RDGLATWDNWKHVNCDKLTT-IIESSLNVLEPAEYRKM 374

Query: 457 FERQEMEPIVDSDITSSICFLTGVCSGCICVIVTAAWTAKVHQPFTATISLLTFIIGYLM 516
           F+R  + P   + I + +          + +I    W        +  + ++  +  Y  
Sbjct: 375 FDRLSVFP-PSAHIPTIL----------LSLI----WFDV---IKSDVMVVVNKLHKY-- 414

Query: 517 VSFPFPISLIALSFQHGYSLISMIDLFINATPQTRIAMALPQACVSCYYV--CYAQN 571
                  SL+    +   S IS+  +++    +     AL ++ V  Y +   +  +
Sbjct: 415 -------SLVEKQPK--ESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00