Citrus Sinensis ID: 007323

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------61
Protein Sequence
MGDGSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI
Secondary Structure (PSIPRED)
ccccccccccccccccHHccccHHHHHHccccccEEHHHHHHHccccccccccccccccccccEEEccccHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccccEEEHHHHHHHHHHHHHHHcccEEEEEccccEEEEccHHHHHHHcccccHHHHHHHcHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHccHHHHHHHHHHHcHHHHHcccccccccHHHHHHHHHHccccEEccccEEEEccccccEEEEEEEcEEEEEEEEccccEEEEEEEccccEEEccccccccccccEEEEcccEEEEEEcHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccccHHHHHccccHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHcHHHcccccccccHHHHcHHcccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHHHEEEEEEHHEHccccEEEEccHHHHHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHccccccEEEEEcccccEEEEEEEcEEEEEEEcccccEEEEEEEccccEEEEEEEEcccccccEEEEEcHHHHHEccHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mgdgsrrkeedsdegeyeMDDLNESLRESRESRFNLVANQVSLLrrnpnrqsvlSGFRHfsrnlvfhpdnrwyRAWTKFILIWAVYSsiftpvefgffrglsknlyvLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIdlfscmpwdliykASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLattlppeqegytwigslkmgdysyadfREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLqyessyteasvlqdipiSIRAKISqtlylpyiekvplfkgcsseFINQIVIRLHeefflpgevimekgNVVDQLYFVCLGKLeevgieengtedyvsylhpnssfgevsilcnipqpytVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNsaayhgdlyqlegliragadpnrtdydgrsplhlaaSRGYEEIMTFLIQKGvdinlkgnsimqi
Flexible Loop (DISEMBL)
mgdgsrrkeedsdegeyemDDLNESLRESRESRFNLVANqvsllrrnpnrqSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYinrnrlgrdirDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQkgvdinlkgnsimqi
Low Complexity Region (SEG)
MGDGSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI
Disordered region (IsUnstruct)
************************************VANQVSLL*******SVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGAD****DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK*******
Disordered Region (DISOPRED)
***********************************************************FSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ***************************************************************HLAASRGYEEIMTFLIQKGVDINLK*N**M**
Disordered Region (DISEMBL)
********************DLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI
Disordered Region (DISPRO)
*****************************************************LSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN***Q*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGDGSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	608	2.2.26 [Sep-21-2011]
Q9M8S6	828	Potassium channel SKOR OS	yes	no	0.975	0.716	0.731	0.0
Q94A76	820	Potassium channel GORK OS	no	no	0.975	0.723	0.663	0.0
Q653P0	858	Potassium channel KOR1 OS	yes	no	0.983	0.696	0.658	0.0
Q7XUW4	719	Potassium channel KOR2 OS	no	no	0.958	0.810	0.568	0.0
Q38998	857	Potassium channel AKT1 OS	no	no	0.924	0.655	0.348	3e-94
Q0JKV1	935	Potassium channel AKT1 OS	no	no	0.871	0.566	0.346	2e-90
P0C550	935	Potassium channel AKT1 OS	N/A	no	0.871	0.566	0.346	2e-90
Q75HP9	855	Potassium channel AKT2 OS	no	no	0.876	0.623	0.355	6e-88
Q8H569	907	Potassium channel AKT3 OS	no	no	0.894	0.599	0.325	3e-84
Q38898	802	Potassium channel AKT2/3	no	no	0.881	0.668	0.341	5e-83

>sp|Q9M8S6|SKOR_ARATH Potassium channel SKOR OS=Arabidopsis thaliana GN=SKOR PE=1 SV=1

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/595 (73%), Positives = 519/595 (87%), Gaps = 2/595 (0%)

Query: 9   EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVF 66
           E D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + 
Sbjct: 16  ESDVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIV 75

Query: 67  HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           HPDNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +
Sbjct: 76  HPDNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFV 135

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
           AYRDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV
Sbjct: 136 AYRDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRV 195

Query: 187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
            +V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct: 196 HRVILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGS 255

Query: 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
           LK+GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMIL
Sbjct: 256 LKLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMIL 315

Query: 307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
           GAYLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA
Sbjct: 316 GAYLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEA 375

Query: 367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
           +VLQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+
Sbjct: 376 AVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGS 435

Query: 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
           VVDQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+L
Sbjct: 436 VVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRIL 495

Query: 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
           R+DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EAELALK+NSA
Sbjct: 496 RLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSA 555

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A++GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+K
Sbjct: 556 AFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIK 610

Highly selective outward-rectifying potassium channel. Involved in potassium release into the xylem sap toward the shoots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. The voltage-dependence of the channel is abolished by internal or external acidification. May interact with the cytoskeleton or with regulatory proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94A76|GORK_ARATH Potassium channel GORK OS=Arabidopsis thaliana GN=GORK PE=1 SV=2

 Score =  848 bits (2191), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 399/601 (66%), Positives = 490/601 (81%), Gaps = 8/601 (1%)

Query: 1   MGDGSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHF 60
           MG   RR+E    E E   DD++     SR  + +L A     L  + +R+    G  H 
Sbjct: 1   MGRLRRRQEIIDHEEEESNDDVS-----SRRGKLSL-AETFRWLDSSEHRRIETDG--HN 52

Query: 61  SRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDI 120
               + HP NRWY+AW  FIL+WA+YSS+FTP+EFGFFRGL + L+VLDIVGQIAFL DI
Sbjct: 53  DYKYIIHPKNRWYKAWEMFILVWAIYSSLFTPMEFGFFRGLPERLFVLDIVGQIAFLVDI 112

Query: 121 VLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLW 180
           VLQF +AYRD+QTYR + K T IA RYL+S F++D   C PWDLIYKASG+ E VRYLLW
Sbjct: 113 VLQFFVAYRDTQTYRTVYKPTRIAFRYLKSHFLMDFIGCFPWDLIYKASGKHELVRYLLW 172

Query: 181 IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEG 240
           IRL+RVRKV +FF ++EKD RINY+F+RI+KL+ VE+YC+H AACIFYYLATTLPPE EG
Sbjct: 173 IRLFRVRKVVEFFQRLEKDTRINYLFTRILKLLFVEVYCTHTAACIFYYLATTLPPENEG 232

Query: 241 YTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
           YTWIGSLK+GDYSY +FREI  WK Y T++Y ++VTM TVGYGD+HAVNLREM+F+MIYV
Sbjct: 233 YTWIGSLKLGDYSYENFREIDLWKRYTTALYFAIVTMATVGYGDIHAVNLREMIFVMIYV 292

Query: 301 SFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE 360
           SFDM+LGAYLIGN+TALIVKGS TE+FRDKM DL+ ++NR +LGRD+R QI GH+RLQY+
Sbjct: 293 SFDMVLGAYLIGNITALIVKGSNTERFRDKMNDLISFMNRKKLGRDLRSQITGHVRLQYD 352

Query: 361 SSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEV 420
           S YT+  +LQDIP SIRAKI+Q LYLPYI+KVPLFKGCS+EFINQIVIRLHEE+FLPGEV
Sbjct: 353 SHYTDTVMLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEV 412

Query: 421 IMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC 480
           I E+GNVVD LYFVC G LE +  + +G+E+ V+ L P++SFG++SI+CNI QP+TV+VC
Sbjct: 413 ITEQGNVVDHLYFVCEGLLEALVTKTDGSEESVTLLGPHTSFGDISIICNISQPFTVRVC 472

Query: 481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELA 540
           ELC LLR+DKQSF+NI++IYF DGR +L N+++ KES+ R+K+L+SDI  HI K EAELA
Sbjct: 473 ELCHLLRLDKQSFSNILEIYFHDGRTILNNIMEEKESNDRIKKLESDIVIHIGKQEAELA 532

Query: 541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           LKVNSAA+ GD YQL+ LIR+GADPN+TDYDGRSPLHLAA RGYE+I  FLIQ+GVD+NL
Sbjct: 533 LKVNSAAFQGDFYQLKSLIRSGADPNKTDYDGRSPLHLAACRGYEDITLFLIQEGVDVNL 592

Query: 601 K 601
           K
Sbjct: 593 K 593

Major selective outward-rectifying potassium channel of the guard cell membrane. Involved in regulation of stomatal movements according to the water status. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by depolarization. Conductance of the channel is modulated in a potassium-dependent fashion. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q653P0|KOR1_ORYSJ Potassium channel KOR1 OS=Oryza sativa subsp. japonica GN=Os06g0250600 PE=2 SV=1

 Score =  843 bits (2178), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 410/623 (65%), Positives = 498/623 (79%), Gaps = 25/623 (4%)

Query: 2   GDGSRRKEEDSDEGE----------------------YEMDDLNESLRESRESRFNLVAN 39
           G GS+R+ ED D+GE                      YE+D + + +  SR SR  L  +
Sbjct: 4   GIGSKRRVED-DDGENMPGRKKKEEEEEEEDDDGEEEYEVDVVRDRIGSSRGSRLALFGS 62

Query: 40  QVSLLRRNPNRQSV--LSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGF 97
            + L R  P R+ V  + G     ++ V  PDN+WYR WT+FIL+WAVYSS FTP+EFGF
Sbjct: 63  DLRLGRFRPRRRRVAPVDGDDGIFQDFVIDPDNKWYRLWTRFILVWAVYSSFFTPLEFGF 122

Query: 98  FRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLF 157
           FRGL +NL+ LDI GQIAFL DIVL+F +AYRD  TYR++   T IALRY +SSFI DL 
Sbjct: 123 FRGLPRNLFFLDIAGQIAFLIDIVLRFFVAYRDPDTYRMVHNPTSIALRYCKSSFIFDLL 182

Query: 158 SCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVEL 217
            C PWD IYKA G KE VRYLLWIRL R  KV++FF  MEKDIRINY+F+RIVKLI VEL
Sbjct: 183 GCFPWDAIYKACGSKEEVRYLLWIRLTRAMKVTEFFRSMEKDIRINYLFTRIVKLIVVEL 242

Query: 218 YCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTM 277
           YC+H AACIFYYLATTLP   EGYTWIGSL++GDYSY+ FREI   K Y+TS+Y ++VTM
Sbjct: 243 YCTHTAACIFYYLATTLPESMEGYTWIGSLQLGDYSYSHFREIDLTKRYMTSLYFAIVTM 302

Query: 278 TTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKY 337
            TVGYGD+HAVN+REM+FIMIYVSFDMILGAYLIGNMTALIVKGS+TE+FRDKM ++++Y
Sbjct: 303 ATVGYGDIHAVNVREMIFIMIYVSFDMILGAYLIGNMTALIVKGSRTERFRDKMKEVIRY 362

Query: 338 INRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKG 397
           +NRN+LG+DIR+QI GHLRLQYESSYTEASVLQDIP+SIRAKISQTLY PYIE +PLFKG
Sbjct: 363 MNRNKLGKDIREQIKGHLRLQYESSYTEASVLQDIPVSIRAKISQTLYKPYIESIPLFKG 422

Query: 398 CSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLH 457
           CS+EFI QIVIRL EEFFLPGEVI+E+G+ VDQLYFVC G LE VGI E+G E+ +  L 
Sbjct: 423 CSAEFIQQIVIRLQEEFFLPGEVILEQGSAVDQLYFVCHGALEGVGIGEDGQEETILMLE 482

Query: 458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKES 517
           P SSFGE+++LCNIPQP+TV+VCELCRLLR+DKQSFTNI++I+F DGR++L+NL +  E 
Sbjct: 483 PESSFGEIAVLCNIPQPFTVRVCELCRLLRLDKQSFTNILEIFFVDGRRILSNLSESSEY 542

Query: 518 DLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLH 577
             R+KQL+SDITFHI K EAEL L+VN+AA++GD++QL+ LIRAGADP  TDYDGRSPLH
Sbjct: 543 GSRIKQLESDITFHIGKQEAELTLRVNNAAFYGDMHQLKSLIRAGADPKNTDYDGRSPLH 602

Query: 578 LAASRGYEEIMTFLIQKGVDINL 600
           LAA +G+E+++ FL+ +GVDI+L
Sbjct: 603 LAACKGFEDVVQFLLHEGVDIDL 625

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XUW4|KOR2_ORYSJ Potassium channel KOR2 OS=Oryza sativa subsp. japonica GN=Os04g0445000 PE=2 SV=2

 Score =  702 bits (1811), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/586 (56%), Positives = 451/586 (76%), Gaps = 3/586 (0%)

Query: 16  EYEMDDLNESLRESRESRFNLVANQVSLLRRNP-NRQSVLSGFRHFSRNLVFHPDNRWYR 74
           EYE+++++++L  S  SR +L A ++   R +  +  + L   +    +LV HP+ RWYR
Sbjct: 4   EYELNEIDDTLHGSVGSRLSLFARELKSRRSSSWHGGTALRLPKDLYESLVIHPNGRWYR 63

Query: 75  AWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTY 134
            W   + +W++YS+ FTP EF FFRGL   L  L+ V Q+ FL D+ + F LAYRD  TY
Sbjct: 64  IWANMMFLWSIYSTFFTPFEFSFFRGLPDQLLDLECV-QLVFLADVAVHFFLAYRDPHTY 122

Query: 135 RLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFH 194
           R++  +  IALRY++ SF +D+  C PWD IYK +GR EAVR+L+W+RLYR RKV  FF 
Sbjct: 123 RMVHDKRHIALRYIKGSFALDVLGCFPWDAIYKVTGRVEAVRWLVWVRLYRGRKVMAFFK 182

Query: 195 KMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSY 254
           ++EKDIR++Y+ +RIVKLI VELYC+H AAC FYYLATTLPP +EG TWIGSL +GD  Y
Sbjct: 183 RVEKDIRVSYLLTRIVKLITVELYCTHTAACGFYYLATTLPPAREGGTWIGSLSLGDARY 242

Query: 255 ADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNM 314
            +FRE+     Y+TS+Y ++VTM TVGYGD+HAVN REM F ++Y+SF ++L AYLIGNM
Sbjct: 243 INFREVDLLTRYVTSLYLAIVTMATVGYGDIHAVNTREMAFTVVYISFSIVLSAYLIGNM 302

Query: 315 TALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVL-QDIP 373
           TALIVKGS+TE+FRD+MTDL++Y+NRNRLG  IR Q+  HL LQYESSYT   V+  DIP
Sbjct: 303 TALIVKGSRTERFRDRMTDLIRYMNRNRLGSAIRSQVKDHLMLQYESSYTRDRVIVDDIP 362

Query: 374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYF 433
           +++R+K+SQTLYL  + +V LF+GCS +F++QIV++LHEEFFLPGEVI+E+G VVDQ+Y 
Sbjct: 363 VAVRSKMSQTLYLDMVSRVGLFRGCSDDFLSQIVLKLHEEFFLPGEVILEQGTVVDQIYI 422

Query: 434 VCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
           V  G LEEV   E+G+E+ +S L P    G+V+++CNIPQPYTV+VCELC LLRIDKQS 
Sbjct: 423 VAHGCLEEVANGEDGSEEIISELRPYGIVGDVAVICNIPQPYTVRVCELCSLLRIDKQSL 482

Query: 494 TNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLY 553
           T+I+ IYF D  ++L+NLL+GKE++ + KQL+SDIT+ ++K E+EL L VN+AAYHGD++
Sbjct: 483 TSILQIYFKDNSQILSNLLKGKETESKRKQLESDITYLLAKQESELVLGVNNAAYHGDIF 542

Query: 554 QLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           +L+ LI AGADP+++DYDGR+ LH+AA RGYE I+ FLIQ+G ++N
Sbjct: 543 RLKSLISAGADPSKSDYDGRTALHIAALRGYENIVRFLIQRGANVN 588

Probable outward-rectifying potassium channel.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38998|AKT1_ARATH Potassium channel AKT1 OS=Arabidopsis thaliana GN=AKT1 PE=1 SV=2

 Score =  346 bits (888), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 205/588 (34%), Positives = 322/588 (54%), Gaps = 26/588 (4%)

Query: 20  DDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKF 79
           D++ +  RES  S F+L    +  L    NR+  L       R  V  P +  YR W  F
Sbjct: 13  DEIEQLSRES--SHFSLSTGILPSLGARSNRRVKL-------RRFVVSPYDHKYRIWEAF 63

Query: 80  ILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICK 139
           +++  VY++  +P EFGF R     L + D +    F  DI++ F + Y D  TY ++  
Sbjct: 64  LVVLVVYTAWVSPFEFGFLRKPRPPLSITDNIVNAFFAIDIIMTFFVGYLDKSTYLIVDD 123

Query: 140 RTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKD 199
           R  IA +YLRS F++DL S +P +   + S +   +  +L  RL+R+R+V   F ++EKD
Sbjct: 124 RKQIAFKYLRSWFLLDLVSTIPSEAAMRISSQSYGLFNML--RLWRLRRVGALFARLEKD 181

Query: 200 IRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFRE 259
              NY + R  KL+ V L+  H AAC +Y +A          TWIG+      + A+F E
Sbjct: 182 RNFNYFWVRCAKLVCVTLFAVHCAACFYYLIAAR--NSNPAKTWIGA------NVANFLE 233

Query: 260 IGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319
              W  Y+TSMY S+ T+TTVGYGD+H VN +EM+F + Y+ F++ L AYLIGNMT L+V
Sbjct: 234 ESLWMRYVTSMYWSITTLTTVGYGDLHPVNTKEMIFDIFYMLFNLGLTAYLIGNMTNLVV 293

Query: 320 KG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES---SYTEASVLQDIPIS 375
            G S+T  FRD +     + +RN L   ++DQ++ HL L+Y +      +   L  +P +
Sbjct: 294 HGTSRTRNFRDTIQAASNFAHRNHLPPRLQDQMLAHLCLKYRTDSEGLQQQETLDALPKA 353

Query: 376 IRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVC 435
           IR+ IS  L+   ++KV LF+G S++ + Q+V  +  E+F P E ++ +       Y + 
Sbjct: 354 IRSSISHFLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPPKEDVILQNEAPTDFYILV 413

Query: 436 LGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTN 495
            G  + V + + GTE  V  +      GE+ +LC  PQ +TV+   LC+LLR+++ +F N
Sbjct: 414 NGTADLVDV-DTGTESIVREVKAGDIIGEIGVLCYRPQLFTVRTKRLCQLLRMNRTTFLN 472

Query: 496 IIDIYFCDGRKVLTNLLQG-KE-SDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLY 553
           II     DG  ++ NLLQ  KE +D  +  +  +I   +++ + +L L +  AA   D  
Sbjct: 473 IIQANVGDGTIIMNNLLQHLKEMNDPVMTNVLLEIENMLARGKMDLPLNLCFAAIREDDL 532

Query: 554 QLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
            L  L++ G DPN +D +GR+PLH+AAS+G    +  L++   D N +
Sbjct: 533 LLHQLLKRGLDPNESDNNGRTPLHIAASKGTLNCVLLLLEYHADPNCR 580

Highly selective inward-rectifying potassium channel that mediate potassium uptake by plant roots in response to low K(+) conditions, by a calcium-, CBL-, and CIPK-dependent pathway. Involved in the stomatal regulation by monitoring the turgor pressure in guard cells. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May interact with the cytoskeleton or with regulatory proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0JKV1|AKT1_ORYSJ Potassium channel AKT1 OS=Oryza sativa subsp. japonica GN=AKT1 PE=2 SV=1

 Score =  333 bits (855), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 303/549 (55%), Gaps = 19/549 (3%)

Query: 62  RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
           R  +  P +R YR W  F+++  VYS+  +P EFGF    +  L   D V    F  DI+
Sbjct: 90  RRFIISPYDRRYRIWETFLIVLVVYSAWVSPFEFGFIPKPTGALATADNVVNAFFAVDII 149

Query: 122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRK-EAVRYLLW 180
           L F +AY D  +Y L      IA RY  +  ++D+ S +P +   +    K  +  +   
Sbjct: 150 LTFFVAYLDKMSYMLEDDPKKIAWRYSTTWLVLDVASTIPSEFARRILPSKLRSYGFFNM 209

Query: 181 IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEG 240
           +RL+R+R+VS  F ++EKD   NY + R  KLI V L+  H AAC +Y LA   P     
Sbjct: 210 LRLWRLRRVSSLFSRLEKDRHFNYFWVRCAKLICVTLFAVHCAACFYYLLADRYPVPTS- 268

Query: 241 YTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
            TWIG+        ADF E   W  Y+TS+Y S+ T+TTVGYGD+HA N REM+F + Y+
Sbjct: 269 -TWIGNY------MADFHERSLWIRYVTSVYWSITTLTTVGYGDLHAENTREMIFNIFYM 321

Query: 301 SFDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQY 359
            F++ L AYLIGNMT L+V G S+T  +RD +     +  RN+L   ++DQ+I H+ L+Y
Sbjct: 322 LFNLGLTAYLIGNMTNLVVHGTSRTRNYRDTIQAATSFGVRNQLPPRLQDQMISHISLKY 381

Query: 360 ES---SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
            +      +  +L  +P +I++ ISQ L+   ++ V LF+G S++ I Q+V  +  E+F 
Sbjct: 382 RTDSEGLQQQEILDSLPKAIKSSISQYLFFHLVQNVYLFQGVSNDLIFQLVSEMKAEYFP 441

Query: 417 PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT 476
           P E ++ +       Y +  G +E V  ++NG +  +         GE+ +LC  PQ +T
Sbjct: 442 PREDVILQNEAPTDFYILVSGSVELVE-QQNGADQVIQVATSGEVVGEIGVLCYRPQLFT 500

Query: 477 VQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ----GKESDLRLKQLQSDITFHI 532
           V+   LC+LLR+++ +F +I+     DG  ++ NL+Q     KE+ + +  +  +I   +
Sbjct: 501 VRTRSLCQLLRLNRTAFLSIVQSNVGDGTIIMNNLIQFLKEQKENSV-MAGVVKEIESML 559

Query: 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           ++   +L + +  A   GD + L  L++ G DPN +D DG + LH+AAS+G E+ +  L+
Sbjct: 560 ARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHTALHIAASKGNEQCVRLLL 619

Query: 593 QKGVDINLK 601
           + G D N +
Sbjct: 620 EYGADPNAR 628

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization. May be a major salt-sensitive potassium channel in roots.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C550|AKT1_ORYSI Potassium channel AKT1 OS=Oryza sativa subsp. indica GN=AKT1 PE=2 SV=1

 Score =  333 bits (855), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 190/549 (34%), Positives = 303/549 (55%), Gaps = 19/549 (3%)

Query: 62  RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
           R  +  P +R YR W  F+++  VYS+  +P EFGF    +  L   D V    F  DI+
Sbjct: 90  RRFIISPYDRRYRIWETFLIVLVVYSAWVSPFEFGFIPKPTGALATADNVVNAFFAVDII 149

Query: 122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRK-EAVRYLLW 180
           L F +AY D  +Y L      IA RY  +  ++D+ S +P +   +    K  +  +   
Sbjct: 150 LTFFVAYLDKMSYMLEDDPKKIAWRYSTTWLVLDVASTIPSEFARRILPSKLRSYGFFNM 209

Query: 181 IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEG 240
           +RL+R+R+VS  F ++EKD   NY + R  KLI V L+  H AAC +Y LA   P     
Sbjct: 210 LRLWRLRRVSSLFSRLEKDRHFNYFWVRCAKLICVTLFAVHCAACFYYLLADRYPVPTS- 268

Query: 241 YTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
            TWIG+        ADF E   W  Y+TS+Y S+ T+TTVGYGD+HA N REM+F + Y+
Sbjct: 269 -TWIGNY------MADFHERSLWIRYVTSVYWSITTLTTVGYGDLHAENTREMIFNIFYM 321

Query: 301 SFDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQY 359
            F++ L AYLIGNMT L+V G S+T  +RD +     +  RN+L   ++DQ+I H+ L+Y
Sbjct: 322 LFNLGLTAYLIGNMTNLVVHGTSRTRNYRDTIQAATSFGVRNQLPPRLQDQMISHISLKY 381

Query: 360 ES---SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
            +      +  +L  +P +I++ ISQ L+   ++ V LF+G S++ I Q+V  +  E+F 
Sbjct: 382 RTDSEGLQQQEILDSLPKAIKSSISQYLFFHLVQNVYLFQGVSNDLIFQLVSEMKAEYFP 441

Query: 417 PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT 476
           P E ++ +       Y +  G +E V  ++NG +  +         GE+ +LC  PQ +T
Sbjct: 442 PREDVILQNEAPTDFYILVSGSVELVE-QQNGADQVIQVATSGEVVGEIGVLCYRPQLFT 500

Query: 477 VQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ----GKESDLRLKQLQSDITFHI 532
           V+   LC+LLR+++ +F +I+     DG  ++ NL+Q     KE+ + +  +  +I   +
Sbjct: 501 VRTRSLCQLLRLNRTAFLSIVQSNVGDGTIIMNNLIQFLKEQKENSV-MAGVVKEIESML 559

Query: 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           ++   +L + +  A   GD + L  L++ G DPN +D DG + LH+AAS+G E+ +  L+
Sbjct: 560 ARGNLDLPITLCFAVTRGDDFLLHQLLKRGMDPNESDNDGHTALHIAASKGNEQCVRLLL 619

Query: 593 QKGVDINLK 601
           + G D N +
Sbjct: 620 EYGADPNAR 628

Highly selective inward-rectifying potassium channel that mediates potassium uptake by plant roots.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q75HP9|AKT2_ORYSJ Potassium channel AKT2 OS=Oryza sativa subsp. japonica GN=Os05g0428700 PE=2 SV=1

 Score =  325 bits (833), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 197/554 (35%), Positives = 313/554 (56%), Gaps = 21/554 (3%)

Query: 65  VFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKN-LYVLDIVGQIAFLFDIVLQ 123
           V  P +  YR W  F+++   YS+   P E  F     K  L V DIV  + F  DIVL 
Sbjct: 63  VISPLDSRYRCWDTFMVVLVAYSAWVYPFEVAFMNASPKGGLEVADIVVDLFFAVDIVLT 122

Query: 124 FCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD-LIYKASG--RKEAVRYLLW 180
           F +AY DS+T  L+  R  IA RYL + FI+D+ S +P+  L Y  +G  R+     LL 
Sbjct: 123 FFVAYIDSRTQLLVRDRRRIATRYLSTFFIMDVASTIPFQGLAYIVTGEVRESPAFSLLG 182

Query: 181 I-RLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQE 239
           I RL+R+RKV QFF ++EKDIR NY + R  +LIAV L+  H A C++Y +A   P  ++
Sbjct: 183 ILRLWRLRKVKQFFTRLEKDIRFNYFWIRCARLIAVTLFLVHCAGCLYYLIADRYPHREK 242

Query: 240 GYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIY 299
             TWIG++        DF+E   W  Y +S+Y S+ TMTTVGYGD+HA N  EM+F + Y
Sbjct: 243 --TWIGAV------IPDFQEASLWIRYTSSVYWSITTMTTVGYGDMHAQNTVEMIFNIFY 294

Query: 300 VSFDMILGAYLIGNMTALIVKGS-KTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQ 358
           + F++ L AYLIGNMT L+V+G+ +T +FR+ +     ++ RN L   ++ QI+ ++ L+
Sbjct: 295 MLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIRAASNFVGRNHLPPRLKQQILAYMCLK 354

Query: 359 YES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLP 417
           + + S  +  ++  +P SI   I + L+LP ++ V LFKG S E +  +V ++  E+  P
Sbjct: 355 FRAESLNQQQLMDQLPKSICKGICEYLFLPVVKDVYLFKGVSREVLLLMVTKMKPEYIPP 414

Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
            E ++ +    D +Y V  G++E +  +    E  V+ L     FGEVS L + PQ +T+
Sbjct: 415 KEDVIVQNEAPDDVYIVVSGEVEVIYSDGEAEERVVATLGTRGVFGEVSALSDRPQSFTL 474

Query: 478 QVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL--QGKESDLRLKQLQSDITFHISKH 535
           +   LC+LLR+ + +    +     D   ++ N L  Q +  D++++ L  +       H
Sbjct: 475 RTRTLCQLLRLRQAALKEAMQSKPEDSVVIIKNFLKHQIEMHDMKVEDLLGEDAAGEYDH 534

Query: 536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
              +   + + A  G+   LE L++ G DP+  D  GR+ LH+AAS+GYE+ +  L+++ 
Sbjct: 535 -GNIPCNLLTVAATGNSSFLEDLLKVGMDPDVGDSKGRTALHIAASKGYEDCVLVLLKQA 593

Query: 596 VDINLK---GNSIM 606
            ++N+K   GN+ +
Sbjct: 594 CNVNIKDAQGNTAL 607

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H569|AKT3_ORYSJ Potassium channel AKT3 OS=Oryza sativa subsp. japonica GN=Os07g0175400 PE=3 SV=1

 Score =  313 bits (802), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 184/565 (32%), Positives = 301/565 (53%), Gaps = 21/565 (3%)

Query: 48  PNRQSVLSGFRHFS-RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLY 106
           P+  S   G RH   R  +  P +R Y  W  ++++  VYS+  TP EFGF    +  L 
Sbjct: 44  PSLGSRGGGERHARLRRFIVSPYDRRYELWNNYLILLVVYSAWVTPFEFGFVPEPAGALA 103

Query: 107 VLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIY 166
             D      F  DIVL F +AY D +T+ L      IALRY+ + F++D+ + +P +L  
Sbjct: 104 AADNAVNAFFAVDIVLTFFVAYTDPKTFLLQDDPRKIALRYITTWFVLDVVATIPTELAR 163

Query: 167 KA-SGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAAC 225
           +       +  +   +RL+R+ +V   F ++EKD + +Y + R VKL+ V L+  H +AC
Sbjct: 164 RILPPDLRSYGFFGILRLWRLHRVGILFARLEKDRKFSYFWVRCVKLVCVTLFAVHCSAC 223

Query: 226 IFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV 285
            +Y LA   P      TWI +         +F +   W  Y+ SMY S+ T++TVGYGD+
Sbjct: 224 FYYLLADRYPDPTN--TWISAY------MPNFHKASIWSRYVASMYWSITTLSTVGYGDM 275

Query: 286 HAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLG 344
           HA N  EMVF   Y+ F++ L AY+IGNMT L+V G S+T KFRD +     +  R++L 
Sbjct: 276 HAENTGEMVFTTTYMLFNLGLTAYIIGNMTNLVVHGTSRTRKFRDMIQAATSFAQRHQLP 335

Query: 345 RDIRDQIIGHLRLQYESSYT---EASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSE 401
             +++Q++ HL L++ ++     +    + +P +I++ IS  L+   ++ V LF+G S++
Sbjct: 336 ARLQEQMVSHLSLKFRTNSEGLHQQETFEALPKAIKSSISHHLFFGLVQNVYLFEGVSND 395

Query: 402 FINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEV----GIEENGTEDYVSYLH 457
            I Q+V  ++ E+F P E I+ +       Y +  G +E +    GIE+           
Sbjct: 396 LIFQLVSEMNAEYFAPREDIILQNEAPADFYIIVSGSMELIELHNGIEQASVLTLAGMAK 455

Query: 458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ---G 514
                GE+ +LC  PQ +T +   LC+LLR+D+ +F  II     DG  V+ NL+Q    
Sbjct: 456 SGDVVGEIGVLCYRPQLFTARTRSLCQLLRLDRAAFLRIIQSNIADGTIVMNNLIQYLRE 515

Query: 515 KESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRS 574
           K+    +  +  +I   +++ + +  + +  AA  GD + L  L++ G DPN +D+ GR+
Sbjct: 516 KKEIASIVAVAKEIDDMLARGQMDFPITLCFAASKGDSFLLHQLLKRGLDPNESDHYGRT 575

Query: 575 PLHLAASRGYEEIMTFLIQKGVDIN 599
            LH+AAS G E+ +  L++ G D N
Sbjct: 576 ALHIAASNGNEQCVRLLLENGADSN 600

Probable inward-rectifying potassium channel. Assuming opened or closed conformations in response to the voltage difference across the membrane, the channel is activated by hyperpolarization.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38898|AKT2_ARATH Potassium channel AKT2/3 OS=Arabidopsis thaliana GN=AKT2 PE=1 SV=1

 Score =  309 bits (791), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 191/559 (34%), Positives = 305/559 (54%), Gaps = 23/559 (4%)

Query: 61  SRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSK-NLYVLDIVGQIAFLFD 119
           S   +  P +  YR W  ++++   YS+   P E  F     K NL + D +  + F  D
Sbjct: 63  SSGWIISPMDSRYRCWEFYMVLLVAYSAWVYPFEVAFLNSSPKRNLCIADNIVDLFFAVD 122

Query: 120 IVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD----LIYKASGRKEAV 175
           IVL F +AY D +T  L+ +   IA+RYL + F++D+ S +P+D    LI   S      
Sbjct: 123 IVLTFFVAYIDERTQLLVREPKQIAVRYLSTWFLMDVASTIPFDAIGYLITGTSTLNITC 182

Query: 176 RYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLP 235
             L  +R +R+R+V   F ++EKDIR +Y + R  +L++V L+  H A C +Y +A   P
Sbjct: 183 NLLGLLRFWRLRRVKHLFTRLEKDIRYSYFWIRCFRLLSVTLFLVHCAGCSYYLIADRYP 242

Query: 236 PEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
              +G TW  ++        +F E      YI ++Y S+ TMTTVGYGD+HA N  EMVF
Sbjct: 243 --HQGKTWTDAI-------PNFTETSLSIRYIAAIYWSITTMTTVGYGDLHASNTIEMVF 293

Query: 296 IMIYVSFDMILGAYLIGNMTALIVKGS-KTEKFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
           I +Y+ F++ L AYLIGNMT L+V+G+ +T +FR+ +     ++NRNRL   ++DQI+ +
Sbjct: 294 ITVYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVNRNRLPPRLKDQILAY 353

Query: 355 LRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEE 413
           + L++++ S  +  ++  +P SI   I Q L+LP +EKV LFKG S E +  +V ++  E
Sbjct: 354 MCLRFKAESLNQQHLIDQLPKSIYKSICQHLFLPSVEKVYLFKGVSREILLLLVSKMKAE 413

Query: 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ 473
           +  P E ++ +    D +Y +  G++E +   E   E  +  L     FGEV  LC  PQ
Sbjct: 414 YIPPREDVIMQNEAPDDVYIIVSGEVEIID-SEMERESVLGTLRCGDIFGEVGALCCRPQ 472

Query: 474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ--GKESDLRLKQLQSDITF- 530
            YT Q   L +LLR+        + I   D   +L N LQ   K S+L +  L++     
Sbjct: 473 SYTFQTKSLSQLLRLKTSFLIETMQIKQQDNATMLKNFLQHHKKLSNLDIGDLKAQQNGE 532

Query: 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTF 590
           +       +A  + +    G+   L+ L++A   P+ TD  G++PLH+AASRGYE+ +  
Sbjct: 533 NTDVVPPNIASNLIAVVTTGNAALLDELLKAKLSPDITDSKGKTPLHVAASRGYEDCVLV 592

Query: 591 LIQKGVDINLK---GNSIM 606
           L++ G +I+++   GNS +
Sbjct: 593 LLKHGCNIHIRDVNGNSAL 611

Highly selective and weak inward-rectifying potassium channel. Plays a role in both loading and unloading potassium into/from the phloem sap. Seems to control sugar loading into phloem via a voltage-dependent process. Blocked by physiological concentrations of external calcium and by external acidification. May interact with the cytoskeleton or with regulatory proteins. Dephosphorylation by PP2CA not only leads to the inhibition of potassium currents but also to an increase of the voltage-dependence of the channel.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	608
356552003	850	PREDICTED: potassium channel SKOR-like [	0.970	0.694	0.789	0.0
356499077	849	PREDICTED: potassium channel SKOR-like [	0.970	0.694	0.777	0.0
224065090	841	predicted protein [Populus trichocarpa]	0.958	0.693	0.765	0.0
449479935	828	PREDICTED: potassium channel SKOR-like [	0.980	0.719	0.749	0.0
449445216	828	PREDICTED: potassium channel SKOR-like [	0.980	0.719	0.747	0.0
224079588	821	predicted protein [Populus trichocarpa]	0.980	0.725	0.740	0.0
15232991	828	Potassium channel SKOR [Arabidopsis thal	0.975	0.716	0.731	0.0
3810676	828	SKOR [Arabidopsis thaliana]	0.975	0.716	0.727	0.0
3641845	828	stelar K+ outward rectifying channel [Ar	0.972	0.713	0.728	0.0
10443349	841	outwardly rectifying potassium channel [	0.970	0.701	0.738	0.0

>gi|356552003|ref|XP_003544361.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 468/593 (78%), Positives = 526/593 (88%), Gaps = 3/593 (0%)

Query: 13  DEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVFHPDN 70
           DE EYE+ DL + L+ SR SRF+L+ NQ+ L       +RQ++L G R FS + V HPDN
Sbjct: 44  DEREYEVQDLRDRLKSSRGSRFDLIENQLGLNSTWSKFSRQALLHGIRGFSVDFVIHPDN 103

Query: 71  RWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRD 130
           RWYRAWTKFIL+WAVYSS FTP+EFGFFRGL +NL++LDI+GQIAFL DIVLQF +AYRD
Sbjct: 104 RWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFVAYRD 163

Query: 131 SQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVS 190
           SQTYR + KRTPIALRYL+S+FI DL  CMPWD+IYKA GRKE VRYLLWIRLYRVRKV+
Sbjct: 164 SQTYRTVYKRTPIALRYLKSNFIFDLLGCMPWDIIYKACGRKEEVRYLLWIRLYRVRKVT 223

Query: 191 QFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMG 250
            FFHK+EKDIR+NY+ +RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGSLK+G
Sbjct: 224 DFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGSLKLG 283

Query: 251 DYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYL 310
           D+SY+ FREI  WK Y TS+Y ++VTM TVGYGD+HAVN+REMVFIM+YVSFDMILGAYL
Sbjct: 284 DFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMVFIMVYVSFDMILGAYL 343

Query: 311 IGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQ 370
           IGNMTALIVKGSKTEKFRDKMTDLMKY+NRNRLGRDIR+QI GH+RLQYESSYTEASV+Q
Sbjct: 344 IGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEASVIQ 403

Query: 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQ 430
           DIPISIRAKISQTLYLPYIEKV LFKGCSSEFI QIVIRLHEEFFLPGEVIME+GNVVDQ
Sbjct: 404 DIPISIRAKISQTLYLPYIEKVSLFKGCSSEFIRQIVIRLHEEFFLPGEVIMEQGNVVDQ 463

Query: 431 LYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490
           LYFVC G LEEVG  E+GTE+ VS L PNSSFGE+SILCNIPQPYTV+VCEL RLLR+DK
Sbjct: 464 LYFVCHGVLEEVGTAEDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELSRLLRLDK 523

Query: 491 QSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHG 550
           QSFTNI+DIYF DGRKVL NLL+GKES  R KQL+SDITFHI K EAELALKVN+AA++G
Sbjct: 524 QSFTNILDIYFYDGRKVLNNLLEGKES-FRDKQLESDITFHIGKQEAELALKVNNAAFNG 582

Query: 551 DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           DLYQL+GLIRAGADPN+TDYDGRSPLHLAASRGYE+I  FLIQ+ VD+N+K N
Sbjct: 583 DLYQLKGLIRAGADPNKTDYDGRSPLHLAASRGYEDITLFLIQERVDVNIKDN 635

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499077|ref|XP_003518370.1| PREDICTED: potassium channel SKOR-like [Glycine max]

 Score =  969 bits (2505), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 464/597 (77%), Positives = 525/597 (87%), Gaps = 7/597 (1%)

Query: 13  DEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFS----RNLVF 66
           DE EYE+ DL + L+ S+ S FNL+ NQ+ L       +RQ++L G R FS    ++ V 
Sbjct: 39  DEREYEVQDLRDRLKSSQGSMFNLIENQLGLNSTWSKFSRQALLHGIRGFSMDLVKDFVI 98

Query: 67  HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           HPDNRWYRAWT FIL+WAVYSS FTP+EFGFFRGL +NL++LDI+GQIAFL DIVLQF +
Sbjct: 99  HPDNRWYRAWTNFILVWAVYSSFFTPMEFGFFRGLPENLFILDIIGQIAFLVDIVLQFFV 158

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
           AYRDSQTYR++ KRTPIALRYL+S+FI DL  CMPWD+IYKA GRKE VRYLLWIRLYRV
Sbjct: 159 AYRDSQTYRMVYKRTPIALRYLKSNFIFDLLGCMPWDIIYKACGRKEEVRYLLWIRLYRV 218

Query: 187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
           RKV  FFHK+EKDIR+NY+ +RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct: 219 RKVEDFFHKLEKDIRVNYIITRIVKLIVVELYCTHTAACIFYYLATTLPESQEGYTWIGS 278

Query: 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
           LK+GD+SY+ FREI  WK Y TS+Y ++VTM TVGYGD+HAVN+REM+FIM+YVSFDMIL
Sbjct: 279 LKLGDFSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDMHAVNMREMIFIMVYVSFDMIL 338

Query: 307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
           GAYLIGNMTALIVKGSKTEKFRDKMTDLMKY+NRNRLGRDIR+QI GH+RLQYESSYTEA
Sbjct: 339 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYMNRNRLGRDIREQIKGHVRLQYESSYTEA 398

Query: 367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
           SV+QDIPISIRAKISQTLYLPYIEKV LFKGCSSEFINQIVIRLHEEFFLPGEVIME+GN
Sbjct: 399 SVIQDIPISIRAKISQTLYLPYIEKVSLFKGCSSEFINQIVIRLHEEFFLPGEVIMEQGN 458

Query: 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
           VVDQLYFVC G LEEVGI E+GTE+ VS L PNSSFGE+SILCNIPQPYTV+VCEL RLL
Sbjct: 459 VVDQLYFVCHGVLEEVGIAEDGTEETVSLLQPNSSFGEISILCNIPQPYTVRVCELGRLL 518

Query: 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
           R+DKQSFTNI+DIYF DGRKVL NLL+GKES  R KQL+SDITFH+ K EAELALKVNSA
Sbjct: 519 RLDKQSFTNILDIYFYDGRKVLYNLLEGKES-FRDKQLESDITFHLGKQEAELALKVNSA 577

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A++GD+YQL+GLIRAGADPN+ DYDGRSPLHLAASRGYE+I  FLIQ+ VD+N+  N
Sbjct: 578 AFNGDMYQLKGLIRAGADPNKADYDGRSPLHLAASRGYEDITIFLIQERVDVNIIDN 634

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065090|ref|XP_002301665.1| predicted protein [Populus trichocarpa] gi|222843391|gb|EEE80938.1| predicted protein [Populus trichocarpa]

 Score =  964 bits (2493), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/597 (76%), Positives = 521/597 (87%), Gaps = 14/597 (2%)

Query: 22  LNESLRESRESRFNLVANQVSLL-----------RRNPNRQSVLSGFRHFSRNLVFHPDN 70
           L + ++ SR SRFNL+  +  L+           RR  +R+SV++G R+ S   V HPDN
Sbjct: 29  LKDRIKSSRGSRFNLIEKEFGLVNNNGSSSMTSWRRKLSRESVINGIRYVSSGFVIHPDN 88

Query: 71  RWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRD 130
           RWYRAWTKFIL+WAVYSS FTP+EFGFFRGL +NL++LDIVGQ+AFL DI+LQF +AYRD
Sbjct: 89  RWYRAWTKFILLWAVYSSFFTPMEFGFFRGLPENLFILDIVGQVAFLLDIILQFFIAYRD 148

Query: 131 SQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVS 190
           SQTYR + KRTPIALRYL+S FIIDL +C+PWD+IYKA G +E VRYLLWIRL RVRKV+
Sbjct: 149 SQTYRTVYKRTPIALRYLKSHFIIDLLACLPWDIIYKACGHREEVRYLLWIRLSRVRKVT 208

Query: 191 QFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMG 250
            FF KMEKDIRINY+F+RIVKLI VELYC+H AACIFY+LATTLP  QEGYTWIGSLKMG
Sbjct: 209 DFFQKMEKDIRINYLFTRIVKLIVVELYCTHTAACIFYHLATTLPSSQEGYTWIGSLKMG 268

Query: 251 DYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYL 310
           DYSY  FREI  WK Y TS+Y +V+TM TVGYGD+HAVNLREM+F+MIYVSFDMILGAYL
Sbjct: 269 DYSYTSFREIDIWKRYTTSLYFAVITMATVGYGDIHAVNLREMIFVMIYVSFDMILGAYL 328

Query: 311 IGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQ 370
           IGNMTALIVKGSKTEKFRDKMTDL+KY+NRNRLG+DIR+QI GH+RLQYESSYTEAS LQ
Sbjct: 329 IGNMTALIVKGSKTEKFRDKMTDLIKYMNRNRLGKDIRNQIKGHVRLQYESSYTEASALQ 388

Query: 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQ 430
           D+PISIRAK+SQTLY  YIEKVPL KGCS+EFINQIVIRLHEEFFLPGEVIME+GNVVDQ
Sbjct: 389 DLPISIRAKVSQTLYTEYIEKVPLLKGCSAEFINQIVIRLHEEFFLPGEVIMEQGNVVDQ 448

Query: 431 LYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490
           LYFVC G LEEVGI ++G+E+ V  L PNSSFGE+SILCNIPQPYTV+VCELCRLLRIDK
Sbjct: 449 LYFVCHGVLEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQPYTVRVCELCRLLRIDK 508

Query: 491 QSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHG 550
           QSF+NI++IYF DGRK+L NLL+GKES+LR KQL+SDITFHI K EAELAL+VNSAAYHG
Sbjct: 509 QSFSNILEIYFYDGRKILDNLLEGKESNLRDKQLESDITFHIGKQEAELALRVNSAAYHG 568

Query: 551 DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK---GNS 604
           DLYQL+G IRAGADPNRTDYDGRSPLHLAASRGYE+I  FLIQ+GVDIN+K   GN+
Sbjct: 569 DLYQLKGFIRAGADPNRTDYDGRSPLHLAASRGYEDITLFLIQEGVDINIKDKFGNT 625

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479935|ref|XP_004155751.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  958 bits (2477), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/602 (74%), Positives = 527/602 (87%), Gaps = 6/602 (0%)

Query: 4   GSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFS 61
           G+ R+ +   E EY ++ + E +  SR SRFNL+  Q+ +   RR  +R+++++G +   
Sbjct: 14  GTHRRSDSDGEVEYRVESVRERISSSRGSRFNLIQRQLRIDQSRRRFSRENLINGIK--- 70

Query: 62  RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
             LV  PD+RWYRAWTKFILIWAVYSS FTP+EFGFFRGL +NL++LDIVGQIAFLFDIV
Sbjct: 71  -CLVILPDSRWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIV 129

Query: 122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWI 181
            QF LAYRD QTYR++ KR+PIAL+YL+S+F+ DL SCMPWD++YKA GR+E VRYLLWI
Sbjct: 130 FQFFLAYRDKQTYRMVYKRSPIALKYLKSTFVTDLLSCMPWDILYKACGRREEVRYLLWI 189

Query: 182 RLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGY 241
           RL+RVRKV  FF  MEKDIRINYMF+RIVKL+ VELYC+H AACIFYYLATTLP  +EGY
Sbjct: 190 RLFRVRKVDAFFKTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGY 249

Query: 242 TWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVS 301
           TWIGSLK+GDYSY+ FREI  WK Y TS+Y ++VTM TVGYGDVHAVNLREM+FIMIYVS
Sbjct: 250 TWIGSLKLGDYSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDVHAVNLREMIFIMIYVS 309

Query: 302 FDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES 361
           FDM+LGAYLIGNMTALIVKGSKT KFRDKM D+MKY+NRNRL R+IRDQI GHLRLQYES
Sbjct: 310 FDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSREIRDQIKGHLRLQYES 369

Query: 362 SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVI 421
           SYTEA+VLQDIPISIRAKISQTLYLPY++ V LF+GCS EFINQIVIRLHEEFFLPGEVI
Sbjct: 370 SYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVI 429

Query: 422 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE 481
           ME+GNVVDQLYFVC G LEE+GI ++ +E+ +  L PNSSFGE+SILCNIPQPYTV+VCE
Sbjct: 430 MEQGNVVDQLYFVCHGVLEELGIGQDSSEETIDLLQPNSSFGEISILCNIPQPYTVRVCE 489

Query: 482 LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELAL 541
           LCRLLRIDKQSFTNI+DIYF DGRK+L NLL+GKE++LR+KQL+SDITFHI K EAELAL
Sbjct: 490 LCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELAL 549

Query: 542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           KVNSAAYHGDLYQL+GL+RAGADPN+TDYDGRSPLHLAASRG+E+I+ FLIQ+GV+I+LK
Sbjct: 550 KVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLK 609

Query: 602 GN 603
            N
Sbjct: 610 DN 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445216|ref|XP_004140369.1| PREDICTED: potassium channel SKOR-like [Cucumis sativus]

 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/602 (74%), Positives = 527/602 (87%), Gaps = 6/602 (0%)

Query: 4   GSRRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFS 61
           G+ R+ +   E EY ++ + E +  SR SRFNL+  Q+ +   RR  +R+++++G +   
Sbjct: 14  GTHRRSDSDGEVEYRVESVRERISSSRGSRFNLIQRQLRIDQSRRRFSRENLINGIK--- 70

Query: 62  RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
             LV  PD+RWYRAWTKFILIWAVYSS FTP+EFGFFRGL +NL++LDIVGQIAFLFDIV
Sbjct: 71  -CLVILPDSRWYRAWTKFILIWAVYSSFFTPMEFGFFRGLPENLFILDIVGQIAFLFDIV 129

Query: 122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWI 181
            QF LAYR+ QTYR++ KR+PIAL+YL+S+F+ DL SCMPWD++YKA GR+E VRYLLWI
Sbjct: 130 FQFFLAYREKQTYRMVYKRSPIALKYLKSTFVTDLLSCMPWDILYKACGRREEVRYLLWI 189

Query: 182 RLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGY 241
           RL+RVRKV  FF  MEKDIRINYMF+RIVKL+ VELYC+H AACIFYYLATTLP  +EGY
Sbjct: 190 RLFRVRKVDAFFKTMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASEEGY 249

Query: 242 TWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVS 301
           TWIGSLK+GDYSY+ FREI  WK Y TS+Y ++VTM TVGYGDVHAVNLREM+FIMIYVS
Sbjct: 250 TWIGSLKLGDYSYSHFREIDLWKRYTTSLYFAIVTMATVGYGDVHAVNLREMIFIMIYVS 309

Query: 302 FDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES 361
           FDM+LGAYLIGNMTALIVKGSKT KFRDKM D+MKY+NRNRL R+IRDQI GHLRLQYES
Sbjct: 310 FDMVLGAYLIGNMTALIVKGSKTVKFRDKMADVMKYMNRNRLSREIRDQIKGHLRLQYES 369

Query: 362 SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVI 421
           SYTEA+VLQDIPISIRAKISQTLYLPY++ V LF+GCS EFINQIVIRLHEEFFLPGEVI
Sbjct: 370 SYTEATVLQDIPISIRAKISQTLYLPYVQNVSLFRGCSPEFINQIVIRLHEEFFLPGEVI 429

Query: 422 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE 481
           ME+GNVVDQLYFVC G LEE+GI ++ +E+ +  L PNSSFGE+SILCNIPQPYTV+VCE
Sbjct: 430 MEQGNVVDQLYFVCHGVLEELGIGQDSSEETIDLLQPNSSFGEISILCNIPQPYTVRVCE 489

Query: 482 LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELAL 541
           LCRLLRIDKQSFTNI+DIYF DGRK+L NLL+GKE++LR+KQL+SDITFHI K EAELAL
Sbjct: 490 LCRLLRIDKQSFTNILDIYFYDGRKILNNLLEGKETNLRVKQLESDITFHIGKQEAELAL 549

Query: 542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           KVNSAAYHGDLYQL+GL+RAGADPN+TDYDGRSPLHLAASRG+E+I+ FLIQ+GV+I+LK
Sbjct: 550 KVNSAAYHGDLYQLKGLVRAGADPNKTDYDGRSPLHLAASRGFEDIVVFLIQEGVNIDLK 609

Query: 602 GN 603
            N
Sbjct: 610 DN 611

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224079588|ref|XP_002305894.1| predicted protein [Populus trichocarpa] gi|222848858|gb|EEE86405.1| predicted protein [Populus trichocarpa]

 Score =  953 bits (2463), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/610 (74%), Positives = 523/610 (85%), Gaps = 14/610 (2%)

Query: 9   EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL-----------LRRNPNRQSVLSGF 57
           ++D D  EYE+ DL + ++ SR SRFNL+ N+  L           LRR  +R+SV++G 
Sbjct: 4   DDDEDGTEYEVQDLRDRIKSSRGSRFNLLENEFGLVNNTESSLITNLRRKLSRESVINGI 63

Query: 58  RHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFL 117
           R+ S     HPDNRWYRAWT FIL+WAVYSS FTP+EFGFFRGL +NL+++DIVGQ+AFL
Sbjct: 64  RYVSTGPAIHPDNRWYRAWTIFILLWAVYSSFFTPMEFGFFRGLPENLFIMDIVGQVAFL 123

Query: 118 FDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRY 177
            DIVLQF +AYRDSQTYR+I KR+PIALRYL+S FIIDL  C+PWD+I+K  GR+E VRY
Sbjct: 124 LDIVLQFFVAYRDSQTYRMIYKRSPIALRYLKSHFIIDLLGCLPWDIIFKVCGRREEVRY 183

Query: 178 LLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPE 237
           LLWIRL RVRKV+ FF K+EKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  
Sbjct: 184 LLWIRLSRVRKVTSFFQKLEKDIRINYLFTRIVKLIVVELYCTHTAACIFYYLATTLPAS 243

Query: 238 QEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIM 297
            EGYTWIGSLKMG Y+Y +FREI  W  Y TS+Y +VVTM TVGYGD+HAVNLREM+F+M
Sbjct: 244 HEGYTWIGSLKMGGYNYTNFREIDIWMRYTTSLYFAVVTMATVGYGDIHAVNLREMIFVM 303

Query: 298 IYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357
           I+VSFDMILGAYLIGNMTA+ VKGSKTEKFRDKMTDL+KY+NRNRLG+DIR+QI GHLRL
Sbjct: 304 IFVSFDMILGAYLIGNMTAITVKGSKTEKFRDKMTDLIKYMNRNRLGKDIRNQIKGHLRL 363

Query: 358 QYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLP 417
           Q+ESSYTEAS LQD+PISIRAKISQTLY  YIEKVPL K CS+EFINQIVIRLHEEFFLP
Sbjct: 364 QHESSYTEASALQDLPISIRAKISQTLYTEYIEKVPLVKDCSAEFINQIVIRLHEEFFLP 423

Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
           GEVIME+GNVVDQLYFVC G LEEVGI ++G+E+ V  L PNSSFGE+SILCNIPQPYTV
Sbjct: 424 GEVIMEQGNVVDQLYFVCHGVLEEVGIGQDGSEETVKLLPPNSSFGEISILCNIPQPYTV 483

Query: 478 QVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEA 537
           +VCELCRLLRIDKQS +NI++IYF DGR++L NLL+GKES+L+ KQL+SDITFHI K EA
Sbjct: 484 RVCELCRLLRIDKQSLSNILEIYFYDGRRILDNLLEGKESNLQYKQLESDITFHIGKQEA 543

Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           ELAL+VNS AYHGDLYQL+GLIRAGADPNRTDYDGRSPLHLAASRGYE+   FLIQ+GVD
Sbjct: 544 ELALRVNSTAYHGDLYQLKGLIRAGADPNRTDYDGRSPLHLAASRGYEDTTLFLIQEGVD 603

Query: 598 INLK---GNS 604
           IN+K   GN+
Sbjct: 604 INIKDKFGNT 613

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232991|ref|NP_186934.1| Potassium channel SKOR [Arabidopsis thaliana] gi|44888539|sp|Q9M8S6.1|SKOR_ARATH RecName: Full=Potassium channel SKOR; AltName: Full=Stelar K(+) outward rectifying channel gi|6728977|gb|AAF26975.1|AC018363_20 stelar K+ outward rectifying channel (SKOR) [Arabidopsis thaliana] gi|332640345|gb|AEE73866.1| Potassium channel SKOR [Arabidopsis thaliana]

 Score =  934 bits (2413), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/595 (73%), Positives = 519/595 (87%), Gaps = 2/595 (0%)

Query: 9   EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVF 66
           E D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + 
Sbjct: 16  ESDVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIV 75

Query: 67  HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           HPDNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +
Sbjct: 76  HPDNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFV 135

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
           AYRDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV
Sbjct: 136 AYRDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRV 195

Query: 187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
            +V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct: 196 HRVILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGS 255

Query: 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
           LK+GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMIL
Sbjct: 256 LKLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMIL 315

Query: 307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
           GAYLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA
Sbjct: 316 GAYLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEA 375

Query: 367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
           +VLQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+
Sbjct: 376 AVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGS 435

Query: 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
           VVDQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+L
Sbjct: 436 VVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRIL 495

Query: 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
           R+DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EAELALK+NSA
Sbjct: 496 RLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSA 555

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A++GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+K
Sbjct: 556 AFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIK 610

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3810676|emb|CAA11280.1| SKOR [Arabidopsis thaliana]

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/595 (72%), Positives = 519/595 (87%), Gaps = 2/595 (0%)

Query: 9   EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVF 66
           E D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + 
Sbjct: 16  ESDVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIV 75

Query: 67  HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           HPDNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +
Sbjct: 76  HPDNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFV 135

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
           AYRDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV
Sbjct: 136 AYRDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRV 195

Query: 187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
            +V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct: 196 HRVILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGS 255

Query: 247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
           LK+GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMIL
Sbjct: 256 LKLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMIL 315

Query: 307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
           GAYLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA
Sbjct: 316 GAYLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEA 375

Query: 367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
           +VLQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+
Sbjct: 376 AVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGS 435

Query: 427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
           VVDQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+L
Sbjct: 436 VVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRIL 495

Query: 487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
           R+DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EA++ALK+NSA
Sbjct: 496 RLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEADVALKLNSA 555

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A++GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+K
Sbjct: 556 AFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIK 610

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3641845|emb|CAA11281.1| stelar K+ outward rectifying channel [Arabidopsis thaliana]

 Score =  929 bits (2401), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 432/593 (72%), Positives = 518/593 (87%), Gaps = 2/593 (0%)

Query: 11  DSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVFHP 68
           D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + HP
Sbjct: 18  DVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIVHP 77

Query: 69  DNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAY 128
           DNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +AY
Sbjct: 78  DNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFVAY 137

Query: 129 RDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRK 188
           RDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV +
Sbjct: 138 RDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRVHR 197

Query: 189 VSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLK 248
           V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGSLK
Sbjct: 198 VILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGSLK 257

Query: 249 MGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGA 308
           +GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMILGA
Sbjct: 258 LGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMILGA 317

Query: 309 YLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASV 368
           YLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA+V
Sbjct: 318 YLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEAAV 377

Query: 369 LQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVV 428
           LQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+VV
Sbjct: 378 LQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGSVV 437

Query: 429 DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI 488
           DQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+LR+
Sbjct: 438 DQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRILRL 497

Query: 489 DKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAY 548
           DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EA++ALK+NSAA+
Sbjct: 498 DKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEADVALKLNSAAF 557

Query: 549 HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           +GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+K
Sbjct: 558 YGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIK 610

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|10443349|emb|CAC10514.1| outwardly rectifying potassium channel [Samanea saman]

 Score =  924 bits (2389), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/592 (73%), Positives = 511/592 (86%), Gaps = 2/592 (0%)

Query: 13  DEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPD-NR 71
           D  EYE+ DL + L+ SR SRF L+ +++  L +    + VL G R FS++ + HP+ NR
Sbjct: 35  DNREYEVQDLRDRLKSSRGSRFRLIEDELKELNQRKLSRYVLDGIRGFSKDFIIHPEKNR 94

Query: 72  WYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDS 131
           WY+AWTKFIL+WA+YSS FTP+EFGFFRGL K+L++LDI+GQ+AFL DIV+QFCLAYRDS
Sbjct: 95  WYQAWTKFILLWAIYSSFFTPMEFGFFRGLDKDLFILDIIGQVAFLVDIVVQFCLAYRDS 154

Query: 132 QTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQ 191
           QTYR+I K + IALRYL+SSFI DL  CMPWD+IYKASGRKE VRYLL IRLYRVRKV +
Sbjct: 155 QTYRMIYKPSSIALRYLKSSFIFDLLGCMPWDIIYKASGRKEGVRYLLLIRLYRVRKVIE 214

Query: 192 FFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGD 251
           FF +MEKDIRINYMF+RIVKL+ VELYC+H AACIFYYLATTLP  QEGYTWIGSLK+GD
Sbjct: 215 FFQRMEKDIRINYMFTRIVKLLVVELYCTHTAACIFYYLATTLPASQEGYTWIGSLKLGD 274

Query: 252 YSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLI 311
           YSY +FR+I  WK Y TS+Y ++VTM TVGYGD+HAVN+REM+FIMIYVSFDM+LGAYLI
Sbjct: 275 YSYMNFRDIDLWKRYTTSLYFAIVTMATVGYGDIHAVNMREMIFIMIYVSFDMVLGAYLI 334

Query: 312 GNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQD 371
           GNMTALIVKGSKTEKFRD+MTDL+KY+NRNRLGRDIR+Q+  H+RLQYESSYTE + +QD
Sbjct: 335 GNMTALIVKGSKTEKFRDRMTDLLKYMNRNRLGRDIREQLKSHMRLQYESSYTEPAAIQD 394

Query: 372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQL 431
           +PIS+R+KISQ LYLP IEKVPLFKGCS EFINQIVIR HEEF LPGEVI+E+GNVVDQL
Sbjct: 395 LPISVRSKISQELYLPCIEKVPLFKGCSLEFINQIVIRPHEEFSLPGEVILEQGNVVDQL 454

Query: 432 YFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQ 491
           Y VC G LEEVG  ENG+E+ VS L PNSSF  +SILCNIPQPYTV+VCELCRLLR+DKQ
Sbjct: 455 YSVCHGVLEEVGPSENGSEETVSLLEPNSSFAHISILCNIPQPYTVRVCELCRLLRLDKQ 514

Query: 492 SFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGD 551
           SFT+I+DIYF DGRKVL NLL+GK+S  R KQL+S+ITFHI K EAELALKVN+AA +GD
Sbjct: 515 SFTDILDIYFFDGRKVLNNLLEGKDSS-RGKQLESEITFHIGKQEAELALKVNNAALNGD 573

Query: 552 LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           L  L+G IRAGADPN+TDYDGRSPLHLAASRGYEEI  FLIQ+GV+I+ + N
Sbjct: 574 LNHLKGFIRAGADPNKTDYDGRSPLHLAASRGYEEITLFLIQEGVEIDKRDN 625

Source: Samanea saman

Species: Samanea saman

Genus: Samanea

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	608
TAIR|locus:2075442	828	SKOR "STELAR K+ outward rectif	0.975	0.716	0.731	8.6e-252
TAIR|locus:2169866	820	GORK "gated outwardly-rectifyi	0.968	0.718	0.664	8.6e-230
TAIR|locus:2043839	857	KT1 "AT2G26650" [Arabidopsis t	0.870	0.617	0.355	1.1e-93
TAIR|locus:2127866	880	KT5 "K+ transporter 5" [Arabid	0.879	0.607	0.322	4.5e-84
TAIR|locus:2132065	802	KT2/3 "potassium transport 2/3	0.937	0.710	0.333	5.8e-82
TAIR|locus:2170468	677	KAT1 "potassium channel in Ara	0.735	0.660	0.349	5.7e-75
TAIR|locus:2005531	697	KAT2 "potassium channel in Ara	0.731	0.638	0.354	9.3e-75
TAIR|locus:2005524	662	KAT3 "AT4G32650" [Arabidopsis	0.735	0.675	0.348	1.2e-72
UNIPROTKB|F1MBN0	663	CNGA2 "Cyclic nucleotide-gated	0.631	0.579	0.274	4.5e-29
UNIPROTKB|Q03041	663	CNGA2 "Cyclic nucleotide-gated	0.631	0.579	0.274	4.5e-29

TAIR|locus:2075442 SKOR "STELAR K+ outward rectifier" [Arabidopsis thaliana (taxid:3702)]

 Score = 2346 (830.9 bits), Expect = 8.6e-252, Sum P(2) = 8.6e-252
 Identities = 435/595 (73%), Positives = 519/595 (87%)

Query:     9 EEDSDEGEYEMDDLNESLRESRESRFNLVANQVSL--LRRNPNRQSVLSGFRHFSRNLVF 66
             E D +  +YE+DD  + + ESR +RFN + N + L     +  + +V++G R  SR  + 
Sbjct:    16 ESDVELEDYEVDDFRDGIVESRGNRFNPLTNFLGLDFAGGSGGKFTVINGIRDISRGSIV 75

Query:    67 HPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
             HPDNRWY+AWT FILIWA+YSS FTP+EFGFFRGL +NL++LDI GQIAFL DIVL F +
Sbjct:    76 HPDNRWYKAWTMFILIWALYSSFFTPLEFGFFRGLPENLFILDIAGQIAFLVDIVLTFFV 135

Query:   127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
             AYRDS+TYR+I KR+ IALRYL+S+FIIDL +CMPWD+IYKA+G KE VRYLL IRLYRV
Sbjct:   136 AYRDSRTYRMIYKRSSIALRYLKSTFIIDLLACMPWDIIYKAAGEKEEVRYLLLIRLYRV 195

Query:   187 RKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS 246
              +V  FFHKMEKDIRINY+F+RIVKLI VELYC+H AACIFYYLATTLP  QEGYTWIGS
Sbjct:   196 HRVILFFHKMEKDIRINYLFTRIVKLIFVELYCTHTAACIFYYLATTLPASQEGYTWIGS 255

Query:   247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMIL 306
             LK+GDYSY+ FREI  W  Y TSMY +VVTM TVGYGD+HAVN+REM+F M+Y+SFDMIL
Sbjct:   256 LKLGDYSYSKFREIDLWTRYTTSMYFAVVTMATVGYGDIHAVNMREMIFAMVYISFDMIL 315

Query:   307 GAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEA 366
             GAYLIGNMTALIVKGSKTE+FRDKM D+M+Y+NRN+LGR+IR QI GHLRLQYESSYTEA
Sbjct:   316 GAYLIGNMTALIVKGSKTERFRDKMADIMRYMNRNKLGRNIRGQITGHLRLQYESSYTEA 375

Query:   367 SVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGN 426
             +VLQDIP+SIRAKI+QTLYLPYIEKVPLF+GCSSEFINQIVIRLHEEFFLPGEVIME+G+
Sbjct:   376 AVLQDIPVSIRAKIAQTLYLPYIEKVPLFRGCSSEFINQIVIRLHEEFFLPGEVIMEQGS 435

Query:   427 VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL 486
             VVDQLYFVC G LEE+GI ++G+E+ V+ L P+ SFGE+SILCNIPQPYTV+V ELCR+L
Sbjct:   436 VVDQLYFVCHGVLEEIGITKDGSEEIVAVLQPDHSFGEISILCNIPQPYTVRVAELCRIL 495

Query:   487 RIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSA 546
             R+DKQSF NI++I+F DGR++L NLL+GKES++R+KQL+SDITFHISK EAELALK+NSA
Sbjct:   496 RLDKQSFMNILEIFFHDGRRILNNLLEGKESNVRIKQLESDITFHISKQEAELALKLNSA 555

Query:   547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
             A++GDLYQL+ LIRAG DPN+TDYDGRSPLHLAASRGYE+I  +LIQ+ VD+N+K
Sbjct:   556 AFYGDLYQLKSLIRAGGDPNKTDYDGRSPLHLAASRGYEDITLYLIQESVDVNIK 610

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IMP;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0005242 "inward rectifier potassium channel activity" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0015271 "outward rectifier potassium channel activity" evidence=IDA

TAIR|locus:2169866 GORK "gated outwardly-rectifying K+ channel" [Arabidopsis thaliana (taxid:3702)]

 Score = 2137 (757.3 bits), Expect = 8.6e-230, Sum P(2) = 8.6e-230
 Identities = 396/596 (66%), Positives = 491/596 (82%)

Query:     6 RRKEEDSDEGEYEMDDLNESLRESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLV 65
             RR++E  D   +E ++ N+ +  SR  + +L A     L  + +R+    G  H     +
Sbjct:     5 RRRQEIID---HEEEESNDDV-SSRRGKLSL-AETFRWLDSSEHRRIETDG--HNDYKYI 57

Query:    66 FHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFC 125
              HP NRWY+AW  FIL+WA+YSS+FTP+EFGFFRGL + L+VLDIVGQIAFL DIVLQF 
Sbjct:    58 IHPKNRWYKAWEMFILVWAIYSSLFTPMEFGFFRGLPERLFVLDIVGQIAFLVDIVLQFF 117

Query:   126 LAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYR 185
             +AYRD+QTYR + K T IA RYL+S F++D   C PWDLIYKASG+ E VRYLLWIRL+R
Sbjct:   118 VAYRDTQTYRTVYKPTRIAFRYLKSHFLMDFIGCFPWDLIYKASGKHELVRYLLWIRLFR 177

Query:   186 VRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIG 245
             VRKV +FF ++EKD RINY+F+RI+KL+ VE+YC+H AACIFYYLATTLPPE EGYTWIG
Sbjct:   178 VRKVVEFFQRLEKDTRINYLFTRILKLLFVEVYCTHTAACIFYYLATTLPPENEGYTWIG 237

Query:   246 SLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMI 305
             SLK+GDYSY +FREI  WK Y T++Y ++VTM TVGYGD+HAVNLREM+F+MIYVSFDM+
Sbjct:   238 SLKLGDYSYENFREIDLWKRYTTALYFAIVTMATVGYGDIHAVNLREMIFVMIYVSFDMV 297

Query:   306 LGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTE 365
             LGAYLIGN+TALIVKGS TE+FRDKM DL+ ++NR +LGRD+R QI GH+RLQY+S YT+
Sbjct:   298 LGAYLIGNITALIVKGSNTERFRDKMNDLISFMNRKKLGRDLRSQITGHVRLQYDSHYTD 357

Query:   366 ASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKG 425
               +LQDIP SIRAKI+Q LYLPYI+KVPLFKGCS+EFINQIVIRLHEE+FLPGEVI E+G
Sbjct:   358 TVMLQDIPASIRAKIAQLLYLPYIKKVPLFKGCSTEFINQIVIRLHEEYFLPGEVITEQG 417

Query:   426 NVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRL 485
             NVVD LYFVC G LE +  + +G+E+ V+ L P++SFG++SI+CNI QP+TV+VCELC L
Sbjct:   418 NVVDHLYFVCEGLLEALVTKTDGSEESVTLLGPHTSFGDISIICNISQPFTVRVCELCHL 477

Query:   486 LRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNS 545
             LR+DKQSF+NI++IYF DGR +L N+++ KES+ R+K+L+SDI  HI K EAELALKVNS
Sbjct:   478 LRLDKQSFSNILEIYFHDGRTILNNIMEEKESNDRIKKLESDIVIHIGKQEAELALKVNS 537

Query:   546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
             AA+ GD YQL+ LIR+GADPN+TDYDGRSPLHLAA RGYE+I  FLIQ+GVD+NLK
Sbjct:   538 AAFQGDFYQLKSLIRSGADPNKTDYDGRSPLHLAACRGYEDITLFLIQEGVDVNLK 593

GO:0005216 "ion channel activity" evidence=IEA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015271 "outward rectifier potassium channel activity" evidence=IMP;IDA

GO:0009409 "response to cold" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2043839 KT1 "AT2G26650" [Arabidopsis thaliana (taxid:3702)]

 Score = 871 (311.7 bits), Expect = 1.1e-93, Sum P(2) = 1.1e-93
 Identities = 194/546 (35%), Positives = 305/546 (55%)

Query:    62 RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
             R  V  P +  YR W  F+++  VY++  +P EFGF R     L + D +    F  DI+
Sbjct:    46 RRFVVSPYDHKYRIWEAFLVVLVVYTAWVSPFEFGFLRKPRPPLSITDNIVNAFFAIDII 105

Query:   122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWI 181
             + F + Y D  TY ++  R  IA +YLRS F++DL S +P +   + S +   +  +L  
Sbjct:   106 MTFFVGYLDKSTYLIVDDRKQIAFKYLRSWFLLDLVSTIPSEAAMRISSQSYGLFNML-- 163

Query:   182 RLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGY 241
             RL+R+R+V   F ++EKD   NY + R  KL+ V L+  H AAC +Y +A          
Sbjct:   164 RLWRLRRVGALFARLEKDRNFNYFWVRCAKLVCVTLFAVHCAACFYYLIAAR--NSNPAK 221

Query:   242 TWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVS 301
             TWIG+      + A+F E   W  Y+TSMY S+ T+TTVGYGD+H VN +EM+F + Y+ 
Sbjct:   222 TWIGA------NVANFLEESLWMRYVTSMYWSITTLTTVGYGDLHPVNTKEMIFDIFYML 275

Query:   302 FDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE 360
             F++ L AYLIGNMT L+V G S+T  FRD +     + +RN L   ++DQ++ HL L+Y 
Sbjct:   276 FNLGLTAYLIGNMTNLVVHGTSRTRNFRDTIQAASNFAHRNHLPPRLQDQMLAHLCLKYR 335

Query:   361 SS---YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLP 417
             +      +   L  +P +IR+ IS  L+   ++KV LF+G S++ + Q+V  +  E+F P
Sbjct:   336 TDSEGLQQQETLDALPKAIRSSISHFLFYSLMDKVYLFRGVSNDLLFQLVSEMKAEYFPP 395

Query:   418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTV 477
              E ++ +       Y +  G  + V ++  GTE  V  +      GE+ +LC  PQ +TV
Sbjct:   396 KEDVILQNEAPTDFYILVNGTADLVDVD-TGTESIVREVKAGDIIGEIGVLCYRPQLFTV 454

Query:   478 QVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG-KE-SDLRLKQLQSDITFHISKH 535
             +   LC+LLR+++ +F NII     DG  ++ NLLQ  KE +D  +  +  +I   +++ 
Sbjct:   455 RTKRLCQLLRMNRTTFLNIIQANVGDGTIIMNNLLQHLKEMNDPVMTNVLLEIENMLARG 514

Query:   536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
             + +L L +  AA   D   L  L++ G DPN +D +GR+PLH+AAS+G    +  L++  
Sbjct:   515 KMDLPLNLCFAAIREDDLLLHQLLKRGLDPNESDNNGRTPLHIAASKGTLNCVLLLLEYH 574

Query:   596 VDINLK 601
              D N +
Sbjct:   575 ADPNCR 580

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048767 "root hair elongation" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IMP

GO:0006813 "potassium ion transport" evidence=IC;IMP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0090333 "regulation of stomatal closure" evidence=IMP

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0006826 "iron ion transport" evidence=RCA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045595 "regulation of cell differentiation" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

GO:0010107 "potassium ion import" evidence=IDA

TAIR|locus:2127866 KT5 "K+ transporter 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 768 (275.4 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 178/552 (32%), Positives = 296/552 (53%)

Query:    58 RHFS-RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAF 116
             RH   R  +  P +  YRAW  F++I  +Y++  +P EFGF +     L +LD V    F
Sbjct:    62 RHIKLRCFIVSPFDPRYRAWDWFLVILVLYTAWASPFEFGFLQTPRAPLSILDNVVNGFF 121

Query:   117 LFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRK-EAV 175
               DIVL F +A+ D  TY L+     IA RY  +  I D+ S +P++L         +  
Sbjct:   122 AVDIVLTFFVAFLDKATYLLVDDPKRIAWRYTSTWLIFDVVSTVPYELFGSLLHNTIQGY 181

Query:   176 RYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLP 235
                  +RL+R+ +VS+ F ++EKD + NY + R  KL+ V L+  H  AC  Y +A   P
Sbjct:   182 GIFSMLRLWRLHRVSKCFARLEKDRKYNYFWIRCTKLLLVSLFVVHCGACFCYSIAAHYP 241

Query:   236 PEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
                       S+     + A++++      Y+T+MY S+ T +T GYGD+H  N  E  F
Sbjct:   242 DP--------SMTFMALAEANWKQKSLLIRYVTAMYWSITTFSTTGYGDIHGNNAEERAF 293

Query:   296 IMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
             I+ Y+ F++ L AY+IGNMT L+V   S+T  FRD +     +  RN L   +++Q++ H
Sbjct:   294 ILFYMIFNLGLLAYIIGNMTNLVVHVTSRTRNFRDTIQAASAFAQRNNLPLGLQEQMVAH 353

Query:   355 LRLQYESS---YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLH 411
             L L+Y +      +  ++  +P +IR+ IS  L+   ++K  LF G S++ + Q+V  + 
Sbjct:   354 LSLRYRTDSEGLQQQEIIDSLPKAIRSSISHYLFYEVVDKTYLFHGISNDLLFQLVSEMK 413

Query:   412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471
              E+F P E ++ +       Y +  G ++ +    NG +  V        FGEV +LC  
Sbjct:   414 AEYFPPKEDVILRNEAPSDFYIMVTGAVDIIA-RVNGVDQVVGEAQTGHVFGEVGVLCYR 472

Query:   472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG-KES-DLRLKQLQSDIT 529
             PQ +TV+   L +LLR+++ +F N++     DG  ++ NLLQ  K+S D  +K + ++  
Sbjct:   473 PQLFTVRTKRLSQLLRLNRTAFLNLVQANVGDGAIIMNNLLQHLKDSTDPVMKGILAETE 532

Query:   530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMT 589
               +++ + +L L +  AA  GD   L  L++ G++PN TD +GR+ LH+AAS+G +  + 
Sbjct:   533 LMLAQGKMDLPLSLCFAAARGDDLLLHQLLKRGSNPNETDKNGRTALHIAASKGSQYCVV 592

Query:   590 FLIQKGVDINLK 601
              L++ G D N++
Sbjct:   593 LLLEHGADPNIR 604

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2132065 KT2/3 "potassium transport 2/3" [Arabidopsis thaliana (taxid:3702)]

 Score = 788 (282.4 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
 Identities = 198/593 (33%), Positives = 317/593 (53%)

Query:    27 RESRESRFNLVANQVSLLRRNPNRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVY 86
             RE      +L  N +S L   P   +  +     S   +  P +  YR W  ++++   Y
Sbjct:    29 REEEYDASSLSLNNLSKLILPPLGVASYNQNHIRSSGWIISPMDSRYRCWEFYMVLLVAY 88

Query:    87 SSIFTPVEFGFFRGLSK-NLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIAL 145
             S+   P E  F     K NL + D +  + F  DIVL F +AY D +T  L+ +   IA+
Sbjct:    89 SAWVYPFEVAFLNSSPKRNLCIADNIVDLFFAVDIVLTFFVAYIDERTQLLVREPKQIAV 148

Query:   146 RYLRSSFIIDLFSCMPWDLI-YKASGRKE---AVRYLLWIRLYRVRKVSQFFHKMEKDIR 201
             RYL + F++D+ S +P+D I Y  +G          L  +R +R+R+V   F ++EKDIR
Sbjct:   149 RYLSTWFLMDVASTIPFDAIGYLITGTSTLNITCNLLGLLRFWRLRRVKHLFTRLEKDIR 208

Query:   202 INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIG 261
              +Y + R  +L++V L+  H A C +Y +A   P   +G TW  ++        +F E  
Sbjct:   209 YSYFWIRCFRLLSVTLFLVHCAGCSYYLIADRYP--HQGKTWTDAIP-------NFTETS 259

Query:   262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321
                 YI ++Y S+ TMTTVGYGD+HA N  EMVFI +Y+ F++ L AYLIGNMT L+V+G
Sbjct:   260 LSIRYIAAIYWSITTMTTVGYGDLHASNTIEMVFITVYMLFNLGLTAYLIGNMTNLVVEG 319

Query:   322 SK-TEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAK 379
             ++ T +FR+ +     ++NRNRL   ++DQI+ ++ L++++ S  +  ++  +P SI   
Sbjct:   320 TRRTMEFRNSIEAASNFVNRNRLPPRLKDQILAYMCLRFKAESLNQQHLIDQLPKSIYKS 379

Query:   380 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL 439
             I Q L+LP +EKV LFKG S E +  +V ++  E+  P E ++ +    D +Y +  G++
Sbjct:   380 ICQHLFLPSVEKVYLFKGVSREILLLLVSKMKAEYIPPREDVIMQNEAPDDVYIIVSGEV 439

Query:   440 EEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDI 499
             E +  E    E  +  L     FGEV  LC  PQ YT Q   L +LLR+        + I
Sbjct:   440 EIIDSEME-RESVLGTLRCGDIFGEVGALCCRPQSYTFQTKSLSQLLRLKTSFLIETMQI 498

Query:   500 YFCDGRKVLTNLLQG--KESDLRLKQLQSDITF-HISKHEAELALKVNSAAYHGDLYQLE 556
                D   +L N LQ   K S+L +  L++     +       +A  + +    G+   L+
Sbjct:   499 KQQDNATMLKNFLQHHKKLSNLDIGDLKAQQNGENTDVVPPNIASNLIAVVTTGNAALLD 558

Query:   557 GLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK---GNSIM 606
              L++A   P+ TD  G++PLH+AASRGYE+ +  L++ G +I+++   GNS +
Sbjct:   559 ELLKAKLSPDITDSKGKTPLHVAASRGYEDCVLVLLKHGCNIHIRDVNGNSAL 611

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042391 "regulation of membrane potential" evidence=IMP

GO:0042802 "identical protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2170468 KAT1 "potassium channel in Arabidopsis thaliana 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 162/464 (34%), Positives = 267/464 (57%)

Query:    62 RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
             R  +  P N  YRAW  ++++  +YS+   P +F F       ++++D +    F  DI+
Sbjct:    48 RKHIISPFNPRYRAWEMWLVLLVIYSAWICPFQFAFITYKKDAIFIIDNIVNGFFAIDII 107

Query:   122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD---LIYKASGRKEAVRYL 178
             L F +AY DS +Y L+     IA+RYL + F  D+ S  P+    L++  +G +   R L
Sbjct:   108 LTFFVAYLDSHSYLLVDSPKKIAIRYLSTWFAFDVCSTAPFQPLSLLFNYNGSELGFRIL 167

Query:   179 LWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQ 238
               +RL+R+R+VS  F ++EKDIR NY + R  KLI+V L+  H A C  Y +A   P  +
Sbjct:   168 SMLRLWRLRRVSSLFARLEKDIRFNYFWIRCTKLISVTLFAIHCAGCFNYLIADRYPNPR 227

Query:   239 EGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI 298
             +  TWIG++      Y +F+E   W  Y+T++Y S+ T+TT GYGD HA N REM+F + 
Sbjct:   228 K--TWIGAV------YPNFKEASLWNRYVTALYWSITTLTTTGYGDFHAENPREMLFDIF 279

Query:   299 YVSFDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357
             ++ F++ L AYLIGNMT L+V   S+T  FRD +    ++ +RN+L  DI+DQ++ H+ L
Sbjct:   280 FMMFNLGLTAYLIGNMTNLVVHWTSRTRTFRDSVRAASEFASRNQLPHDIQDQMLSHICL 339

Query:   358 QYESS-YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
             ++++    +   L ++P +IR+ I+  L+ P +  + LF+G S  F+ Q+V  +  E+F 
Sbjct:   340 KFKTEGLKQQETLNNLPKAIRSSIANYLFFPIVHNIYLFQGVSRNFLFQLVSDIDAEYFP 399

Query:   417 PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT 476
             P E I+ +      LY +  G ++   +  +G + +        +FGEV +L   PQP+T
Sbjct:   400 PKEDIILQNEAPTDLYILVSGAVDFT-VYVDGHDQFQGKAVIGETFGEVGVLYYRPQPFT 458

Query:   477 VQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL---LQGKES 517
             V+  EL ++LRI + S  + +  +  DGR ++ NL   L+G++S
Sbjct:   459 VRTTELSQILRISRTSLMSAMHAHADDGRVIMNNLFMKLRGQQS 502

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA;IGI

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2005531 KAT2 "potassium channel in Arabidopsis thaliana 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
 Identities = 165/466 (35%), Positives = 269/466 (57%)

Query:    62 RNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIV 121
             R  +  P +  +R W  +++I  +YS+   P EF F       L+++D +    F  DI+
Sbjct:    48 RKHIISPFDPRFRGWEMWLVILVIYSAWICPFEFAFITYKKDALFIIDNIVNGFFAIDII 107

Query:   122 LQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD---LIYKASGRKEAVRYL 178
             L F +AY DS +Y L+ K   IA+RYL + F  D+ S  P+    L++K +G +   R L
Sbjct:   108 LTFFVAYLDSHSYLLVDKPKKIAIRYLSTWFAFDVCSTAPFQSLSLLFKYNGSEIGFRVL 167

Query:   179 LWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQ 238
               +RL+R+R+VS  F ++EKDIR NY ++R  KLI+V L+  H A C  Y +A       
Sbjct:   168 SMLRLWRLRRVSSLFARLEKDIRFNYFWTRCTKLISVTLFAVHCAGCFAYLIADQYHDPT 227

Query:   239 EGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI 298
             +  TWIG++      Y +F+E   W  Y+T++Y S+ T+TT GYGD+HA N REM+F + 
Sbjct:   228 K--TWIGAV------YPNFKETSVWSRYVTALYWSITTLTTTGYGDLHAENPREMLFFVF 279

Query:   299 YVSFDMILGAYLIGNMTALIVKG-SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357
             ++ F++   +YLIGNMT L+V   S+T  FRD +    ++ +RN+L  +I+DQ++ H+ L
Sbjct:   280 FMLFNLGFTSYLIGNMTNLVVHWTSRTRNFRDTVRAASEFASRNQLPPNIQDQMLSHICL 339

Query:   358 QYESS-YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
             ++++    +   L  +P +IR+ I+  L+ P ++ V LF G S  F+ Q+V  +  E+F 
Sbjct:   340 KFKTEGLKQQEALNGLPKAIRSSIANYLFFPIVQNVYLFHGVSRNFLFQLVSDIDAEYFP 399

Query:   417 PGEVIMEKGNVVDQLYFVCLGKLE-EVGIEENGTEDYVS-YLHPNSSFGEVSILCNIPQP 474
             P E ++ +      LY +  G ++  V +   G ED V        +FGE+ +LC  PQP
Sbjct:   400 PREDVILQNEAPTDLYILVSGAVDFTVYV---GEEDQVQGKAVVGDAFGEIGVLCYTPQP 456

Query:   475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL---LQGKES 517
             +TV+  EL ++LRI K+S  + +  +  DGR ++ NL   L+G++S
Sbjct:   457 FTVRTTELSQILRISKKSLMSAMRAHVEDGRVIMNNLFMKLRGQQS 502

GO:0005216 "ion channel activity" evidence=IEA

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS;IDA

GO:0005249 "voltage-gated potassium channel activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISS

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009644 "response to high light intensity" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

TAIR|locus:2005524 KAT3 "AT4G32650" [Arabidopsis thaliana (taxid:3702)]

 Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
 Identities = 163/468 (34%), Positives = 269/468 (57%)

Query:    64 LVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQ 123
             +V H D R YR W  F++I   YS+  +  E  F +     L  +D+V    F  DI+L 
Sbjct:    78 IVLHFDRR-YRLWELFLVILVGYSAWASLFELAFEKAAEGALLTIDLVVDFFFAVDIILT 136

Query:   124 FCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKAS----GRKEAVRYL 178
             F ++Y D+ TY  +     IA RYL+S +F++D+ S +P   IYK      GR +A  +L
Sbjct:   137 FFVSYLDNTTYLNVTDHKLIAKRYLKSVAFVMDVASTLPIQFIYKTITGDVGRGQAFGFL 196

Query:   179 LWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQ 238
               +RL+R+R+V++ F ++EKD   NY   R++KL+ V ++  H+A CI Y++A   P   
Sbjct:   197 NLLRLWRLRRVAELFKRLEKDAHFNYFVIRVIKLLCVTIFWIHLAGCILYWIAYHYPRPT 256

Query:   239 EGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI 298
             +  TWIGS         DF+E   W  Y  SMY S+VT+TTVGYGD+HAVN RE  F M 
Sbjct:   257 D--TWIGS------QVEDFKERSVWLGYTYSMYWSIVTLTTVGYGDLHAVNSREKTFNMF 308

Query:   299 YVSFDMILGAYLIGNMTALIVKGS-KTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRL 357
             Y+ F++ L +Y+IG MT L+V G+ +T   R  + D+++Y ++NRL   +R+Q++ H++L
Sbjct:   309 YMLFNIGLTSYIIGIMTNLVVHGALRTFAMRSAINDILRYTSKNRLPDTMREQMLAHMQL 368

Query:   358 QYESS-YTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL 416
             +++++   +  VLQD+P +IR+ I+Q L+   IE+  LFKG     + Q+V ++  E+F 
Sbjct:   369 KFKTAELRQEEVLQDLPKAIRSSINQHLFRSIIEEAYLFKGFPEGLLVQLVSQIQAEYFP 428

Query:   417 PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT 476
             P   I+ +  +    Y +  G ++ +   +  +E  ++ L P S  GE+ ++ NIPQP+T
Sbjct:   429 PKMEIILQNEIPTDFYVIVSGGVDIIA-SKGVSEQVLAKLGPGSMAGEIGVVFNIPQPFT 487

Query:   477 VQVCELCRLLRIDKQSFTNIIDI-YFCDGRKVLTNL---LQGKESDLR 520
             V+   L +++RI    F  ++      D + ++ N    L+G   +L+
Sbjct:   488 VRTRRLSQVIRIGHHKFKEMVQSDNDVDAKMIIANFMTYLKGLNDELK 535

GO:0005242 "inward rectifier potassium channel activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;IDA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=IEA

GO:0030551 "cyclic nucleotide binding" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0010163 "high-affinity potassium ion import" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

UNIPROTKB|F1MBN0 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 4.5e-29, P = 4.5e-29
 Identities = 115/419 (27%), Positives = 207/419 (49%)

Query:    65 VFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLY----VLDIVGQIAFLFDI 120
             V  P   WY  W   I +  +Y+     V    F  L K  Y    VLD V  + ++ D+
Sbjct:   132 VLDPAGDWYYRWLFLIALPVLYNWCLL-VARACFSDLQKGYYIVWLVLDYVSDVVYIADL 190

Query:   121 VLQFCLAYRDSQTYRLICKRTPIALR--YLRS-SFIIDLFSCMPWDLIYKASG-RKEAVR 176
              ++    + +     L+ K T   LR  Y+ +  F +D+ S +P DLIY A G     VR
Sbjct:   191 FIRLRTGFLEQG---LLVKDTK-KLRDNYIHTMQFKLDVASIIPTDLIYFAVGIHNPEVR 246

Query:   177 YLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPP 236
             +    RL    ++ +FF + E       +F RI  LI   L   H  ACI+Y ++ ++  
Sbjct:   247 FN---RLLHFARMFEFFDRTETRTSYPNIF-RISNLILYILIIIHWNACIYYAISKSIGF 302

Query:   237 EQEGYTWI-GSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
               +  TW+  ++   +Y Y   RE      YI  +Y S +T+TT+G      V   E +F
Sbjct:   303 GVD--TWVYPNITDPEYGYLS-RE------YIYCLYWSTLTLTTIGETPP-PVKDEEYLF 352

Query:   296 IMIYVSFDMILGAYLIGNMTALIVKGSKTE-KFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
             ++      +++ A ++GN+ ++I   + T  +F+ K+  +  Y+   ++ +++  ++I  
Sbjct:   353 VIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKEMEAKVIRW 412

Query:   355 LRLQY--ESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHE 412
                 +  + S  E  VL+++P  +RA+I+  ++L  ++KV +F+ C +  + ++V++L  
Sbjct:   413 FDYLWTNKKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRP 472

Query:   413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471
             + F PG+ I  KG++  ++Y +  GKL  V   ++G   Y + L   S FGE+SIL NI
Sbjct:   473 QVFSPGDYICRKGDIGKEMYIIKEGKLAVVA--DDGVTQY-ALLSAGSCFGEISIL-NI 527

GO:0007608 "sensory perception of smell" evidence=IEA

GO:0005216 "ion channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q03041 CNGA2 "Cyclic nucleotide-gated olfactory channel" [Bos taurus (taxid:9913)]

 Score = 350 (128.3 bits), Expect = 4.5e-29, P = 4.5e-29
 Identities = 115/419 (27%), Positives = 207/419 (49%)

Query:    65 VFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLY----VLDIVGQIAFLFDI 120
             V  P   WY  W   I +  +Y+     V    F  L K  Y    VLD V  + ++ D+
Sbjct:   132 VLDPAGDWYYRWLFLIALPVLYNWCLL-VARACFSDLQKGYYIVWLVLDYVSDVVYIADL 190

Query:   121 VLQFCLAYRDSQTYRLICKRTPIALR--YLRS-SFIIDLFSCMPWDLIYKASG-RKEAVR 176
              ++    + +     L+ K T   LR  Y+ +  F +D+ S +P DLIY A G     VR
Sbjct:   191 FIRLRTGFLEQG---LLVKDTK-KLRDNYIHTMQFKLDVASIIPTDLIYFAVGIHNPEVR 246

Query:   177 YLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPP 236
             +    RL    ++ +FF + E       +F RI  LI   L   H  ACI+Y ++ ++  
Sbjct:   247 FN---RLLHFARMFEFFDRTETRTSYPNIF-RISNLILYILIIIHWNACIYYAISKSIGF 302

Query:   237 EQEGYTWI-GSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
               +  TW+  ++   +Y Y   RE      YI  +Y S +T+TT+G      V   E +F
Sbjct:   303 GVD--TWVYPNITDPEYGYLS-RE------YIYCLYWSTLTLTTIGETPP-PVKDEEYLF 352

Query:   296 IMIYVSFDMILGAYLIGNMTALIVKGSKTE-KFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
             ++      +++ A ++GN+ ++I   + T  +F+ K+  +  Y+   ++ +++  ++I  
Sbjct:   353 VIFDFLIGVLIFATIVGNVGSMISNMNATRAEFQAKIDAVKHYMQFRKVSKEMEAKVIRW 412

Query:   355 LRLQY--ESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHE 412
                 +  + S  E  VL+++P  +RA+I+  ++L  ++KV +F+ C +  + ++V++L  
Sbjct:   413 FDYLWTNKKSVDEREVLKNLPAKLRAEIAINVHLSTLKKVRIFQDCEAGLLVELVLKLRP 472

Query:   413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471
             + F PG+ I  KG++  ++Y +  GKL  V   ++G   Y + L   S FGE+SIL NI
Sbjct:   473 QVFSPGDYICRKGDIGKEMYIIKEGKLAVVA--DDGVTQY-ALLSAGSCFGEISIL-NI 527

GO:0007608 "sensory perception of smell" evidence=ISS

GO:0005216 "ion channel activity" evidence=ISS

GO:0050896 "response to stimulus" evidence=IEA

GO:0030552 "cAMP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9M8S6	SKOR_ARATH	No assigned EC number	0.7310	0.9753	0.7161	yes	no
Q653P0	KOR1_ORYSJ	No assigned EC number	0.6581	0.9835	0.6969	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	608
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-114
cd00038	115	cd00038, CAP_ED, effector domain of the CAP family	9e-24
pfam00027	91	pfam00027, cNMP_binding, Cyclic nucleotide-binding	9e-16
pfam00520	194	pfam00520, Ion_trans, Ion transport protein	2e-15
smart00100	120	smart00100, cNMP, Cyclic nucleotide-monophosphate	3e-15
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-14
COG0664	214	COG0664, Crp, cAMP-binding proteins - catabolite g	7e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	8e-12
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-11
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-10
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-08
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-07
pfam07885	74	pfam07885, Ion_trans_2, Ion channel	5e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	2e-06
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	4e-06
smart00248	30	smart00248, ANK, ankyrin repeats	9e-06
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	8e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	9e-04
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	0.001
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	0.002
TIGR03896	317	TIGR03896, cyc_nuc_ocin, bacteriocin-type transpor	0.004

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score =  359 bits (922), Expect = e-114
 Identities = 196/560 (35%), Positives = 316/560 (56%), Gaps = 27/560 (4%)

Query: 61  SRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSK-NLYVLDIVGQIAFLFD 119
           S   +  P +  YR W   +++   YS+   P E  F     K  L + D V  + F  D
Sbjct: 49  SDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVD 108

Query: 120 IVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWD-LIYKASGR-KEAVRY 177
           IVL F +AY D +T  L+  R  IA+RYL + F++D+ S +P+  L Y  +G  K  + Y
Sbjct: 109 IVLTFFVAYIDPRTQLLVRDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSY 168

Query: 178 LLW--IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLP 235
            L   +R +R+R+V Q F ++EKDIR +Y + R  +L++V L+  H A C++Y +A   P
Sbjct: 169 SLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLLSVTLFLVHCAGCLYYLIADRYP 228

Query: 236 PEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF 295
              +G TWIG++        +FRE   W  YI+++Y S+ TMTTVGYGD+HAVN  EM+F
Sbjct: 229 --HQGKTWIGAV------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEMIF 280

Query: 296 IMIYVSFDMILGAYLIGNMTALIVKGS-KTEKFRDKMTDLMKYINRNRLGRDIRDQIIGH 354
           I+ Y+ F++ L AYLIGNMT L+V+G+ +T +FR+ +     ++ RNRL   ++DQI+ +
Sbjct: 281 IIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAY 340

Query: 355 LRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEE 413
           + L++++ S  +  ++  +P SI   I Q L+LP +EKV LFKG S E +  +V ++  E
Sbjct: 341 MCLRFKAESLNQQQLIDQLPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAE 400

Query: 414 FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV-SYLHPNSSFGEVSILCNIP 472
           +  P E ++ +    D +Y V  G++E   I+  G ++ V   L     FGEV  LC  P
Sbjct: 401 YIPPREDVIMQNEAPDDVYIVVSGEVEI--IDSEGEKERVVGTLGCGDIFGEVGALCCRP 458

Query: 473 QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG--KESDLRLKQLQSDITF 530
           Q +T +   L +LLR+   +    +     D   +L N LQ   +  DL +  L  D   
Sbjct: 459 QSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGD--- 515

Query: 531 HISKH-EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMT 589
           +  +H +  +A  + + A  G+   LE L++A  DP+  D  GR+PLH+AAS+GYE+ + 
Sbjct: 516 NGGEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVL 575

Query: 590 FLIQKGVDINLK---GNSIM 606
            L++   +++++   GN+ +
Sbjct: 576 VLLKHACNVHIRDANGNTAL 595

Length = 823

>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

 Score = 95.9 bits (239), Expect = 9e-24
 Identities = 38/115 (33%), Positives = 60/115 (52%)

Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LF G   E + ++   L E  F  GEVI+ +G+  D LY V  G +E   ++E+G E  V
Sbjct: 1   LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIV 60

Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            +L P   FGE+++L N P+  TV+      LL + +  F  ++  Y    R++L
Sbjct: 61  GFLGPGDLFGELALLGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELARRLL 115

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115

>gnl|CDD|215664 pfam00027, cNMP_binding, Cyclic nucleotide-binding domain

 Score = 72.3 bits (178), Expect = 9e-16
 Identities = 28/89 (31%), Positives = 47/89 (52%)

Query: 412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI 471
              F  GEVI  +G+  D LY V  GK++   ++E+G E  +++L P   FGE+++L   
Sbjct: 1   LRSFKKGEVIFREGDPADSLYIVLSGKVKVYKLDEDGREQILAFLGPGDFFGELALLGGE 60

Query: 472 PQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
           P+  TV       LL I ++ F  +++  
Sbjct: 61  PRSATVVALTDSELLVIPREDFLELLEQD 89

Length = 91

>gnl|CDD|215968 pfam00520, Ion_trans, Ion transport protein

 Score = 75.0 bits (185), Expect = 2e-15
 Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 31/214 (14%)

Query: 107 VLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLI 165
           +LD V  + F  +++L+F                     +Y RS + I+D    +P  + 
Sbjct: 1   ILDYVFTVIFTLEMLLKFIALG--------------FKRKYFRSPWNILDFLVVLPSLVS 46

Query: 166 Y---KASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSH 221
                       +R L  +RL R+ ++ + F  +   ++ +      ++ L+ + L    
Sbjct: 47  LILFLLGEDSGLLRVLRLLRLLRLLRLLRRFPGLRTLLQSLGRSLKSLLNLLLLLLLLLF 106

Query: 222 IAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVG 281
           I A I   L      +             D +         + SY  ++     T+TT G
Sbjct: 107 IFAIIGVQLFGGELDKCC-----------DKNENPINGNSNFDSYGEALLWLFRTLTTEG 155

Query: 282 YGDVHAVNLREM-VFIMIYVSFDMILGAYLIGNM 314
           +GDV    L    V   I+    +ILG  L+ N+
Sbjct: 156 WGDVMYDTLVPGTVLGKIFFVIFIILGGVLLLNL 189

This family contains Sodium, Potassium, Calcium ion channels. This family is 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some sub-families (e.g. Na channels) the domain is repeated four times, whereas in others (e.g. K channels) the protein forms as a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not the Pfam family due to it lacking the first four helices. Length = 194

>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain

 Score = 72.0 bits (177), Expect = 3e-15
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK   +E + ++   L    +  GEVI+ +G+V D  Y +  G++E   + E+G E  V
Sbjct: 1   LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIIVSGEVEVYKVLEDGEEQIV 60

Query: 454 SYLHPNSSFGEVSILCNIPQPY--TVQVCELCRLLRIDKQSFTNII 497
             L P   FGE+++L N  +         EL  LLRID + F  ++
Sbjct: 61  GTLGPGDFFGELALLTNSRRAASAAAVALELATLLRIDFRDFLQLL 106

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases. Length = 120

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 68.9 bits (169), Expect = 4e-14
 Identities = 27/59 (45%), Positives = 38/59 (64%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           AA +G L  ++ L+  GAD N  D DGR+PLHLAA  G+ EI+  L++KG D+N +   
Sbjct: 14  AASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKD 72

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|223736 COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

 Score = 64.9 bits (158), Expect = 7e-12
 Identities = 31/142 (21%), Positives = 61/142 (42%), Gaps = 6/142 (4%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            +++ PL     SE +  + ++L       GEV+  +G   D LY +  G ++     E+
Sbjct: 1   ALKENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTED 60

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
           G E  + +L P   FGE+++L   P+  +        +L I ++ F  ++         +
Sbjct: 61  GREIILGFLGPGDFFGELALLGGDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALAL 120

Query: 508 LTNLLQGKESDLRLKQLQSDIT 529
           L  L +      RL+Q    ++
Sbjct: 121 LRLLAR------RLRQALERLS 136

Length = 214

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.1 bits (149), Expect = 8e-12
 Identities = 27/56 (48%), Positives = 36/56 (64%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           AA +G+L  ++ L+  GAD N  D DG + LHLAA  G  EI+  L++ G DINLK
Sbjct: 35  AARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINLK 90

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 61.2 bits (149), Expect = 2e-11
 Identities = 23/56 (41%), Positives = 35/56 (62%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           AA +G L  ++ L+  GAD N  D DG +PLHLAA  G  +++  L++ G D+N +
Sbjct: 47  AAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNAR 102

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 56.5 bits (137), Expect = 4e-10
 Identities = 24/59 (40%), Positives = 34/59 (57%), Gaps = 2/59 (3%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           AA +G+L  ++ L+  GAD N  D D  + LHLAA  G  EI+  L++ G D+N K   
Sbjct: 4   AAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKDKD 60

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 22/47 (46%), Positives = 33/47 (70%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           AA +G+L  ++ L++ GAD N  D DGR+PLHLAA  G+ E++  L+
Sbjct: 80  AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 50.2 bits (121), Expect = 2e-08
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           DG +PLHLAA  G+ E++  L++ G D+N +  
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.9 bits (120), Expect = 3e-08
 Identities = 20/47 (42%), Positives = 28/47 (59%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           AA  G L  ++ L+  G D NRTD DG + LH+AA  G  E++  L+
Sbjct: 8   AAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 20/38 (52%), Positives = 27/38 (71%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           N  D DGR+PLHLAAS G+ E++  L++ G D+N K N
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDN 38

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|219619 pfam07885, Ion_trans_2, Ion channel

 Score = 47.2 bits (113), Expect = 5e-07
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 1/62 (1%)

Query: 254 YADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGN 313
           Y+   E   W  ++ ++Y S VT+TT+GYGD+  +     +F +IY+   + L    +  
Sbjct: 14  YSLEEEGWGW-DFLDALYFSFVTLTTIGYGDIVPLTDAGRLFTIIYILIGIPLFLLFLAV 72

Query: 314 MT 315
           + 
Sbjct: 73  LG 74

This family includes the two membrane helix type ion channels found in bacteria. Length = 74

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 3/73 (4%)

Query: 539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
           L +++   A  GD      L+  GADPN  DYDGR+PLH+A + G+ +++  L++ G D 
Sbjct: 82  LTVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 599 NL---KGNSIMQI 608
            L    G + +++
Sbjct: 142 TLLDKDGKTPLEL 154

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 21/48 (43%), Positives = 32/48 (66%), Gaps = 1/48 (2%)

Query: 558 LIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           L+  G  D N TD +G +PLHLAA  G  E++ +L++ GVD+NL+ + 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSD 48

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 42.2 bits (100), Expect = 9e-06
 Identities = 17/30 (56%), Positives = 21/30 (70%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           DGR+PLHLAA  G  E++  L+ KG DIN 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 12/127 (9%)

Query: 494 TNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDIT-FHISKHEAELALKVNSAAYHGDL 552
            ++      D +  L   L    +    + L   I   H++  + +  L ++SAA  GD 
Sbjct: 27  LSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDD 86

Query: 553 YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE-----EIMTFLIQKGVD------INLK 601
             ++ L+ +GAD N  D DG +PLHLAA  G       E+   L++ G D       +  
Sbjct: 87  KIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDED 146

Query: 602 GNSIMQI 608
           GN+ +  
Sbjct: 147 GNTPLHW 153

Length = 235

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 8e-05
 Identities = 15/29 (51%), Positives = 20/29 (68%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           DG +PLHLAA  G  E++  L++ G DIN
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 42.5 bits (99), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 544 NSAAYHGDLYQLEGLIRAGA---DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           N     G++   + L+ AGA     N  D DG +PLH AA  G  +I+  L++ G D N 
Sbjct: 116 NGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNS 175

Query: 601 K 601
           +
Sbjct: 176 R 176

Length = 235

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.9 bits (98), Expect = 9e-04
 Identities = 24/74 (32%), Positives = 41/74 (55%)

Query: 532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
           ++  +AEL   ++ A   GDL  ++ L   GAD N  D +G  P+H+A    + +I+  L
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLL 176

Query: 592 IQKGVDINLKGNSI 605
           ++KG   N+K N+ 
Sbjct: 177 LEKGAYANVKDNNG 190

Length = 434

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.5 bits (98), Expect = 0.001
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEE-IMTFLIQKGVDINLKGN 603
           L+ AGAD N  +  G +PLHL         ++  LI+ G D+N K  
Sbjct: 69  LLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDK 115

Length = 471

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 572 GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606
           GR+ LH AA  G  E++ +L++KGVDIN       
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGN 35

Length = 54

>gnl|CDD|234384 TIGR03896, cyc_nuc_ocin, bacteriocin-type transport-associated protein

 Score = 39.1 bits (91), Expect = 0.004
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 2/76 (2%)

Query: 418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL-CNIPQPYT 476
           G +++ +G  VD LY +  G+   + I  +G    V         GE   L  ++P   T
Sbjct: 169 GTILIHEGGTVDALYILLYGEA-SLSISPDGPGREVGSSRRGEILGETPFLNGSLPGTAT 227

Query: 477 VQVCELCRLLRIDKQS 492
           V+  E   LL IDKQ 
Sbjct: 228 VKAIENSVLLAIDKQQ 243

Members of this protein family are uncharacterized and contain two copies of the cyclic nucleotide-binding domain pfam00027. Members are restricted to select cyanobacteria but are found regularly in association with a transport operon that, in turn, is associated with the production of putative bacteriocins. The models describing the transport operon are TIGR03794, TIGR03796, and TIGR03797. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	608
PLN03192	823	Voltage-dependent potassium channel; Provisional	100.0
KOG0498	727	consensus K+-channel ERG and related proteins, con	100.0
KOG0500	536	consensus Cyclic nucleotide-gated cation channel C	100.0
KOG0501	971	consensus K+-channel KCNQ [Inorganic ion transport	100.0
KOG0499	815	consensus Cyclic nucleotide-gated cation channel C	100.0
KOG3713	477	consensus Voltage-gated K+ channel KCNB/KCNC [Inor	99.97
KOG1419	654	consensus Voltage-gated K+ channel KCNQ [Inorganic	99.93
KOG1545	507	consensus Voltage-gated shaker-like K+ channel KCN	99.9
KOG4390	632	consensus Voltage-gated A-type K+ channel KCND [In	99.8
PRK09392	236	ftrB transcriptional activator FtrB; Provisional	99.61
PF00520	200	Ion_trans: Ion transport protein calcium channel s	99.58
cd00038	115	CAP_ED effector domain of the CAP family of transc	99.57
COG2905	610	Predicted signal-transduction protein containing c	99.56
PRK11753	211	DNA-binding transcriptional dual regulator Crp; Pr	99.55
PF00027	91	cNMP_binding: Cyclic nucleotide-binding domain; In	99.52
smart00100	120	cNMP Cyclic nucleotide-monophosphate binding domai	99.51
PRK10402	226	DNA-binding transcriptional activator YeiL; Provis	99.5
COG0664	214	Crp cAMP-binding proteins - catabolite gene activa	99.46
PRK11161	235	fumarate/nitrate reduction transcriptional regulat	99.46
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.42
KOG1420	1103	consensus Ca2+-activated K+ channel Slowpoke, alph	99.41
PF07885	79	Ion_trans_2: Ion channel; InterPro: IPR013099 This	99.37
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.35
PLN02868	413	acyl-CoA thioesterase family protein	99.34
KOG0614	732	consensus cGMP-dependent protein kinase [Signal tr	99.33
TIGR03697	193	NtcA_cyano global nitrogen regulator NtcA, cyanoba	99.3
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.3
PRK09391	230	fixK transcriptional regulator FixK; Provisional	99.28
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.23
PRK13918	202	CRP/FNR family transcriptional regulator; Provisio	99.21
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.21
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.18
KOG1113	368	consensus cAMP-dependent protein kinase types I an	99.07
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.05
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.03
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.99
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.98
PRK10537	393	voltage-gated potassium channel; Provisional	98.96
PHA02884	300	ankyrin repeat protein; Provisional	98.87
KOG0514	452	consensus Ankyrin repeat protein [General function	98.87
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.86
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.8
PHA02741	169	hypothetical protein; Provisional	98.8
KOG3684	489	consensus Ca2+-activated K+ channel proteins (inte	98.76
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	98.75
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	98.74
KOG0508	615	consensus Ankyrin repeat protein [General function	98.74
PHA02743	166	Viral ankyrin protein; Provisional	98.73
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	98.73
PHA02791	284	ankyrin-like protein; Provisional	98.71
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.7
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	98.69
PHA02859	209	ankyrin repeat protein; Provisional	98.69
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.68
PHA02795	437	ankyrin-like protein; Provisional	98.68
PF13606	30	Ank_3: Ankyrin repeat	98.67
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	98.66
PHA02791	284	ankyrin-like protein; Provisional	98.66
PHA02878	477	ankyrin repeat protein; Provisional	98.66
PHA02946	446	ankyin-like protein; Provisional	98.65
PHA02743	166	Viral ankyrin protein; Provisional	98.64
PHA02859	209	ankyrin repeat protein; Provisional	98.63
PHA02736	154	Viral ankyrin protein; Provisional	98.61
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.61
PHA02884	300	ankyrin repeat protein; Provisional	98.6
KOG0508	615	consensus Ankyrin repeat protein [General function	98.58
PHA03095	471	ankyrin-like protein; Provisional	98.57
PHA02741	169	hypothetical protein; Provisional	98.56
PHA03095	471	ankyrin-like protein; Provisional	98.56
PHA02875	413	ankyrin repeat protein; Provisional	98.55
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.55
PHA02874	434	ankyrin repeat protein; Provisional	98.55
PHA02798	489	ankyrin-like protein; Provisional	98.55
KOG0514	452	consensus Ankyrin repeat protein [General function	98.52
KOG0512	228	consensus Fetal globin-inducing factor (contains a	98.51
PHA02875	413	ankyrin repeat protein; Provisional	98.51
PHA02946	446	ankyin-like protein; Provisional	98.49
PHA03100	480	ankyrin repeat protein; Provisional	98.47
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	98.46
PHA02730	672	ankyrin-like protein; Provisional	98.46
KOG2302	1956	consensus T-type voltage-gated Ca2+ channel, pore-	98.45
PHA02878	477	ankyrin repeat protein; Provisional	98.45
PHA02874	434	ankyrin repeat protein; Provisional	98.44
PHA02795	437	ankyrin-like protein; Provisional	98.43
KOG3193	1087	consensus K+ channel subunit [Inorganic ion transp	98.41
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.41
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	98.41
KOG0510	929	consensus Ankyrin repeat protein [General function	98.4
PHA02792	631	ankyrin-like protein; Provisional	98.4
PHA02736	154	Viral ankyrin protein; Provisional	98.37
PF01007	336	IRK: Inward rectifier potassium channel; InterPro:	98.36
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	98.35
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.34
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	98.32
PF08412	77	Ion_trans_N: Ion transport protein N-terminal; Int	98.32
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.31
PHA02798	489	ankyrin-like protein; Provisional	98.31
PHA03100	480	ankyrin repeat protein; Provisional	98.3
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.25
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	98.23
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	98.23
PHA02989	494	ankyrin repeat protein; Provisional	98.22
PHA02917	661	ankyrin-like protein; Provisional	98.22
PHA02876	682	ankyrin repeat protein; Provisional	98.22
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.2
PHA02989	494	ankyrin repeat protein; Provisional	98.19
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.18
PHA02876	682	ankyrin repeat protein; Provisional	98.17
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.13
PHA02730	672	ankyrin-like protein; Provisional	98.13
PHA02917	661	ankyrin-like protein; Provisional	98.12
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.11
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	98.08
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	98.08
KOG0510	929	consensus Ankyrin repeat protein [General function	98.07
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.05
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	97.96
KOG2968	1158	consensus Predicted esterase of the alpha-beta hyd	97.94
PHA02792	631	ankyrin-like protein; Provisional	97.9
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.89
KOG0783	1267	consensus Uncharacterized conserved protein, conta	97.88
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	97.87
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	97.81
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	97.6
KOG3827	400	consensus Inward rectifier K+ channel [Inorganic i	97.58
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	97.58
KOG0511	516	consensus Ankyrin repeat protein [General function	97.56
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	97.55
TIGR00870	743	trp transient-receptor-potential calcium channel p	97.46
KOG0522	560	consensus Ankyrin repeat protein [General function	97.46
PF04831	153	Popeye: Popeye protein conserved region; InterPro:	97.36
PRK11832	207	putative DNA-binding transcriptional regulator; Pr	97.34
PLN03223	1634	Polycystin cation channel protein; Provisional	97.33
KOG4404	350	consensus Tandem pore domain K+ channel TASK3/THIK	97.13
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	97.12
KOG0522	560	consensus Ankyrin repeat protein [General function	97.1
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	97.09
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	97.08
KOG2301	1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	97.05
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	96.96
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	96.94
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	96.81
PF13606	30	Ank_3: Ankyrin repeat	96.79
KOG2301	1592	consensus Voltage-gated Ca2+ channels, alpha1 subu	96.62
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	96.58
KOG0521	785	consensus Putative GTPase activating proteins (GAP	96.58
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	96.55
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.15
KOG2384	223	consensus Major histocompatibility complex protein	95.98
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	95.95
KOG3542	1283	consensus cAMP-regulated guanine nucleotide exchan	95.73
KOG2505	591	consensus Ankyrin repeat protein [General function	95.44
KOG1418	433	consensus Tandem pore domain K+ channel [Inorganic	95.1
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	95.1
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	94.89
KOG2302	1956	consensus T-type voltage-gated Ca2+ channel, pore-	94.78
KOG0783	1267	consensus Uncharacterized conserved protein, conta	94.53
KOG0498	727	consensus K+-channel ERG and related proteins, con	93.37
KOG3599	798	consensus Ca2+-modulated nonselective cation chann	92.38
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	91.63
KOG0520	975	consensus Uncharacterized conserved protein, conta	91.42
KOG3614	1381	consensus Ca2+/Mg2+-permeable cation channels (LTR	90.67
PF08016	425	PKD_channel: Polycystin cation channel; InterPro:	90.66
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	90.02
PF00060	148	Lig_chan: Ligand-gated ion channel; InterPro: IPR0	89.44
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	88.64
COG4709	195	Predicted membrane protein [Function unknown]	86.32
KOG0521	785	consensus Putative GTPase activating proteins (GAP	85.33
KOG4440	993	consensus NMDA selective glutamate-gated ion chann	83.94
PF00520	200	Ion_trans: Ion transport protein calcium channel s	83.54
KOG2505	591	consensus Ankyrin repeat protein [General function	82.49
KOG1053	1258	consensus Glutamate-gated NMDA-type ion channel re	81.69
PF08006	181	DUF1700: Protein of unknown function (DUF1700); In	80.34

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=100.00  E-value=1.7e-86  Score=739.40  Aligned_cols=539  Identities=35%  Similarity=0.620  Sum_probs=479.0

Q ss_pred             ccccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeeccCCC-cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEe
Q 007323           59 HFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLS-KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLI  137 (608)
Q Consensus        59 ~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~-~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i  137 (608)
                      ...+.|+|+|.++++++|+.+++++++|+++++|+.++|....+ ..++++|++++++|++|++++|+|+|++++++.+|
T Consensus        47 ~~~~~~ii~P~~~~~~~Wd~~~~~~~~y~~~~~p~~~~F~~~~~~~~~~~~d~i~~~~F~iDi~l~f~~ay~d~~~~~lV  126 (823)
T PLN03192         47 IGSDGWIISPMDSRYRWWETLMVVLVAYSAWVYPFEVAFLNASPKRGLEIADNVVDLFFAVDIVLTFFVAYIDPRTQLLV  126 (823)
T ss_pred             cccCCeEECCCCcHHHHHHHHHHHHHHHHHHHHHHHHHeeCCCCCCCeeeHHHHHHHHHHHHHHhheeEEEEeCCCcEEE
Confidence            34567999999999999999999999999999999999965433 35889999999999999999999999999999999


Q ss_pred             eccHHHHHHHhhccchhHhhhhccHHHHHhhc-Cc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 007323          138 CKRTPIALRYLRSSFIIDLFSCMPWDLIYKAS-GR---KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLI  213 (608)
Q Consensus       138 ~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~-~~---~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~  213 (608)
                      .||++|+++|+|+||++|+++++|++++.... +.   ...+.+++++|++|+.|+.+++.++++....++...++++++
T Consensus       127 ~d~~~I~~~Yl~~~f~~Dlis~lP~~~i~~~~~~~~~~~~~~~~l~llrl~Rl~ri~~~~~~le~~~~~~~~~~~~~kli  206 (823)
T PLN03192        127 RDRKKIAVRYLSTWFLMDVASTIPFQALAYLITGTVKLNLSYSLLGLLRFWRLRRVKQLFTRLEKDIRFSYFWIRCARLL  206 (823)
T ss_pred             eCHHHHHHHHHHHhHHHHHHHHhHHHHHHHHhcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999999999999999999999998764332 22   234678889999999999999999998888777778999999


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhH
Q 007323          214 AVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREM  293 (608)
Q Consensus       214 ~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~  293 (608)
                      +.+++++||+||+||+++...+.  .+.+|+...      +.++.+.+++.+|+.|+||+++|||||||||++|.|..|+
T Consensus       207 ~~~l~~~H~~aC~~y~i~~~~~~--~~~~Wi~~~------~~~~~~~s~~~~Yi~slYwai~TmtTVGYGDi~p~t~~E~  278 (823)
T PLN03192        207 SVTLFLVHCAGCLYYLIADRYPH--QGKTWIGAV------IPNFRETSLWIRYISAIYWSITTMTTVGYGDLHAVNTIEM  278 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCC--CCCchHHHh------hhccccCcHHHHHHHHHHHHHHHHhhccCCCcCCCccchH
Confidence            99999999999999999865433  345898642      1345567899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc-cccHHHHHhh
Q 007323          294 VFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQD  371 (608)
Q Consensus       294 ~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~-~~~~~~~l~~  371 (608)
                      ++++++|++|++++||++|++++++.+ ..++.+|+++++.+++||+++++|++||+||++|++++|+. +.++++++++
T Consensus       279 i~~i~~ml~g~~~~a~~ig~i~~li~~~~~~~~~f~~~~~~~~~ym~~~~lp~~lq~ri~~y~~~~~~~~~~~~~~~l~~  358 (823)
T PLN03192        279 IFIIFYMLFNLGLTAYLIGNMTNLVVEGTRRTMEFRNSIEAASNFVGRNRLPPRLKDQILAYMCLRFKAESLNQQQLIDQ  358 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            999999999999999999999999988 66778999999999999999999999999999999999975 5678899999


Q ss_pred             CCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcee
Q 007323          372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED  451 (608)
Q Consensus       372 lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~  451 (608)
                      ||++||.++..+++.+.++++++|++++++++.+++..++++.|.|||.|+.+||.++++|||.+|.|++.. ..+|++.
T Consensus       359 Lp~~Lr~~i~~~l~~~~l~~~~lF~~~s~~~l~~L~~~~~~~~~~pge~I~~qge~~~~lY~I~~G~V~i~~-~~~~~e~  437 (823)
T PLN03192        359 LPKSICKSICQHLFLPVVEKVYLFKGVSREILLLLVTKMKAEYIPPREDVIMQNEAPDDVYIVVSGEVEIID-SEGEKER  437 (823)
T ss_pred             cCHHHHHHHHHHHHHHHHhhCcchhcCCHHHHHHHHHhhheeeeCCCCEEEECCCCCceEEEEEecEEEEEE-ecCCcce
Confidence            999999999999999999999999999999999999999999999999999999999999999999999986 4567888


Q ss_pred             eeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhccCcchhhh--hhhccccc
Q 007323          452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRL--KQLQSDIT  529 (608)
Q Consensus       452 ~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~~~~~~~~--~~l~~~~~  529 (608)
                      ++..+++|++|||.+++.+.|++++++|.+.|+++.+++++|.++++++|++...+++++.++.......  ..+..+..
T Consensus       438 ~l~~l~~Gd~FGE~~~l~~~p~~~t~ra~~~s~ll~l~~~~f~~ll~~~p~d~~~i~~~~l~~~~~l~~l~v~~ll~~~~  517 (823)
T PLN03192        438 VVGTLGCGDIFGEVGALCCRPQSFTFRTKTLSQLLRLKTSTLIEAMQTRQEDNVVILKNFLQHHKELHDLNVGDLLGDNG  517 (823)
T ss_pred             eeEEccCCCEecchHHhcCCCCCCeEEEcccEEEEEEEHHHHHHHHHHhhHHHHHHHHHHHHHhhhhccccHHHHHhhcc
Confidence            8999999999999999999999999999999999999999999999999999999999988743211110  00000111


Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                        ....+.....+++.||..|+.+.++.+++.|+++|..|..|+||||.|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus       518 --~~~~~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~Tp  594 (823)
T PLN03192        518 --GEHDDPNMASNLLTVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTA  594 (823)
T ss_pred             --cccCCccchhHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCH
Confidence              11223345678999999999999999999999999999999999999999999999999999999999999999985

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=9.6e-86  Score=683.73  Aligned_cols=545  Identities=35%  Similarity=0.570  Sum_probs=462.0

Q ss_pred             ccccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeeccC----------CCcCeehHHHHHHHHHHHHHHhhceeeE
Q 007323           59 HFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRG----------LSKNLYVLDIVGQIAFLFDIVLQFCLAY  128 (608)
Q Consensus        59 ~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~----------~~~~~~~~~~~~~~~f~~d~~~~f~t~~  128 (608)
                      .....++++|.|++++.|+.+++++++|++++.|+.++|...          ....+.++|.++|++|++||+++|+|+|
T Consensus        63 ~~~~~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~~d~~~~~~l~v~d~ivD~fflvdIvL~Frtay  142 (727)
T KOG0498|consen   63 DKSRKWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKCIDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAY  142 (727)
T ss_pred             ccccceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEecccccccccccccCceeeHHHHHHHHHHHHHHHhheEEE
Confidence            444556999999999999999999999999999999999765          4567899999999999999999999999


Q ss_pred             EeCCCcEEeeccHHHHHHHhhccchhHhhhhccHHHHHhhcC---------chhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          129 RDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASG---------RKEAVRYLLWIRLYRVRKVSQFFHKMEKD  199 (608)
Q Consensus       129 ~~~~~~~~i~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~~---------~~~~~~~l~l~rl~r~~r~~~~~~~~~~~  199 (608)
                      +++.+.++|.||++|++||+|+||++|++|++|++.++....         ......++.+.||+|+.|+.++++++++.
T Consensus       143 v~~~s~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~Rl~Rv~~l~~r~~k~  222 (727)
T KOG0498|consen  143 VDPSSYELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLPRLRRVIPLFARLEKD  222 (727)
T ss_pred             ECCCCceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999998999999999999999999999999999998876432         22467788899999999999999999988


Q ss_pred             hhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCC-ceecccccCCCCccc----ccccchHHHHHHHHHH
Q 007323          200 IRINY--MFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGY-TWIGSLKMGDYSYAD----FREIGFWKSYITSMYA  272 (608)
Q Consensus       200 ~~~~~--~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~-~w~~~~~~~~~~~~~----~~~~~~~~~Y~~s~y~  272 (608)
                      ...++  .+.-+.++++.+++++||+||+||+++...+...... +|+..... .....+    +...+...+|++|+||
T Consensus       223 ~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~tw~~~l~~-~~~~~~~~~~fg~~s~~~kY~~aLyw  301 (727)
T KOG0498|consen  223 TGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKATWLGSLGR-LLSCYNLSFTFGIYSLALKYVYALYW  301 (727)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccc-ccccCcccccccchhHHHHHHHHHHH
Confidence            77765  2334778999999999999999999998887655555 99987542 222222    6667788899999999


Q ss_pred             HHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHH
Q 007323          273 SVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQI  351 (608)
Q Consensus       273 ~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv  351 (608)
                      +++||||+||||.+|.+..|++|+|++|++|.++||++||++.+++++ .++.++|+.+++++.+||++++||++||+||
T Consensus       302 ~l~tLstvG~g~~~s~~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi  381 (727)
T KOG0498|consen  302 GLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRI  381 (727)
T ss_pred             HhhHhhhccCCccCCCCcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999 7889999999999999999999999999999


Q ss_pred             HHHHHHHHhc--cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccC
Q 007323          352 IGHLRLQYES--SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVD  429 (608)
Q Consensus       352 ~~y~~~~~~~--~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~  429 (608)
                      ++|++|+|..  +.+|++++++||+.||++|+.++|.++++++|+|+++++..+.+++.++++..|+|||+|++|||+.+
T Consensus       382 ~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~  461 (727)
T KOG0498|consen  382 RRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVT  461 (727)
T ss_pred             HHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccc
Confidence            9999999975  89999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec-chhhhcC-CCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHH
Q 007323          430 QLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG-EVSILCN-IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (608)
Q Consensus       430 ~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG-e~~~~~~-~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~i  507 (608)
                      .||||.+|.+++...+ +|.+.....+++||+|| |+..... .|.+.||+|.+.|+++.+.+++|..+++.+|.++..+
T Consensus       462 ~myFI~rG~le~~~~~-~g~~~~~~~L~~Gd~~GeEl~~~~~~~p~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~  540 (727)
T KOG0498|consen  462 DMYFIVRGSLESITTD-GGGFFVVAILGPGDFFGEELLTWCLDLPQTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKF  540 (727)
T ss_pred             eeEEEEeeeEEEEEcc-CCceEEEEEecCCCccchHHHHHHhcCCCCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHH
Confidence            9999999999998754 45667889999999999 7777766 7889999999999999999999999999999999999


Q ss_pred             HHH---HhccCcchhhhhhhcccccccccch-hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC
Q 007323          508 LTN---LLQGKESDLRLKQLQSDITFHISKH-EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG  583 (608)
Q Consensus       508 l~~---l~~~~~~~~~~~~l~~~~~~~i~~~-~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~  583 (608)
                      +++   +.......-.....+....-+...+ ..+.......++..++.......+..+..++..+.+|.+|+|.++..+
T Consensus       541 l~~~~r~~s~~~r~~aa~~iq~a~r~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  620 (727)
T KOG0498|consen  541 LQHTFRYYSHLWRTWAACFIQAAWRRHIKRKGEEELALEEEESAIRGDDRGSKSLLRAGILASRFAANGRPPLHTAASRG  620 (727)
T ss_pred             HHhHHHHhhhhhhhhhhhhHHHHHHHHHHhhccchhhhhcchhhhccccccchhhhhcccccccccccCCCccccccccC
Confidence            884   3332211111111111111111110 111111111122223333455567778888888999999999999999


Q ss_pred             cHHHHHHHHhcCCCCCCcCCCC
Q 007323          584 YEEIMTFLIQKGVDINLKGNSI  605 (608)
Q Consensus       584 ~~~~v~~Ll~~ga~~~~~~~~g  605 (608)
                      ..++...++.++++++..+.+|
T Consensus       621 ~~~~~~~~~~~~~~p~f~~~~~  642 (727)
T KOG0498|consen  621 SSDCALLLLQKPADPDFSDAEG  642 (727)
T ss_pred             ccccccccCCCCCCCCcccccc
Confidence            9999999999999999887654

>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=1.2e-67  Score=506.21  Aligned_cols=416  Identities=23%  Similarity=0.419  Sum_probs=367.7

Q ss_pred             HHHHHHHHHHhchheeeccC---CCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhHh
Q 007323           81 LIWAVYSSIFTPVEFGFFRG---LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDL  156 (608)
Q Consensus        81 ~~~~~~~~~~~p~~~~f~~~---~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f~iDl  156 (608)
                      .+.++|++++++...+|+.-   ....|..+|+++|++|++|++++.++||.++|  .+|.|-++.++||+.+ .|.+|+
T Consensus         4 s~~vLYN~~~li~r~~F~di~~~y~~~wl~ld~~~D~vyllDi~v~~R~gyleqG--llV~~~~Kl~~hY~~s~~f~lD~   81 (536)
T KOG0500|consen    4 SLGVLYNMIVLIVRAAFDDIQSSYLENWLPLDYLFDFVYLLDIIVRSRTGYLEQG--LLVKDTSKLRKHYVHSTQFKLDV   81 (536)
T ss_pred             EEehHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhcC--eeehhhHHHHHHHHHhhhhhhhh
Confidence            44578999999998888642   23458899999999999999999999999988  8999999999999998 789999


Q ss_pred             hhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC
Q 007323          157 FSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPP  236 (608)
Q Consensus       157 ~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~  236 (608)
                      +|++|+++++...+....   .|++|++|+.|+..++.+.+.....+.. .++.+++.++++++||.||++|+++...+.
T Consensus        82 l~liP~D~l~~~~~~~~~---~r~nRllk~yRl~~F~~rTetrT~~Pn~-fri~~lv~~~~ilfHWNaClYf~iS~~~g~  157 (536)
T KOG0500|consen   82 LSLIPLDLLLFKDGSASL---ERLNRLLKIYRLFEFFDRTETRTTYPNA-FRISKLVHYCLILFHWNACLYFLISKAIGF  157 (536)
T ss_pred             hhhcchhHHhhcCCcchH---HHHHHHHHHHHHHHHHHHhccccCCchH-HHHHHHHHHHHHHHHHhhHHHHhhhHhcCc
Confidence            999999999877766544   4578888888899999988877666554 599999999999999999999999987665


Q ss_pred             CCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          237 EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA  316 (608)
Q Consensus       237 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~  316 (608)
                      ..+  +|.... +.+..+......++..+|+.|+||+..||||+| -..+|.+..|.+|.++-.++|+++||.++|++++
T Consensus       158 ~~d--~wvY~~-i~d~~~~~c~~~n~~ReY~~S~YWStLTlTTiG-e~P~P~t~~ey~F~I~d~LiGvliFAtIvG~VGs  233 (536)
T KOG0500|consen  158 TTD--DWVYPK-INDPEFATCDAGNLTREYLYSLYWSTLTLTTIG-EQPPPVTSSEYAFVIVDTLIGVLIFATIVGNVGS  233 (536)
T ss_pred             ccc--ccccCC-ccCccccccchhHHHHHHHHHHHHHhhhhhhcc-CCCCCCcCchhhHHHHHHHHHHHHHhhhhccHhH
Confidence            444  365532 222222222223488999999999999999999 7789999999999999999999999999999999


Q ss_pred             HHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhcc--ccHHHHHhhCCHHHHHHHHHHHhHhhhcccc
Q 007323          317 LIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTEASVLQDIPISIRAKISQTLYLPYIEKVP  393 (608)
Q Consensus       317 ~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~--~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~  393 (608)
                      ++++ +..+.+||++|+.+++||+.+++|..||.||.+||.|.|.++  .+|+++++.||+.|+.||+.+++.+.|++++
T Consensus       234 mVtnmna~r~EFq~~mDGiK~YM~~RkV~~~lq~rVikwfdYlwa~~~~~DEeevl~~LP~kL~aeIA~nvh~dTLkkV~  313 (536)
T KOG0500|consen  234 MVTNMNAARTEFQAKMDGIKQYMRYRKVPKALQTRVIKWFDYLWAHKKIVDEEEVLKLLPDKLKAEIAINVHLDTLKKVR  313 (536)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhccccccHHHHHHhCCHHHHhHhHHHHHHHHHHhhh
Confidence            9999 777899999999999999999999999999999999999654  5799999999999999999999999999999


Q ss_pred             cccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhc----
Q 007323          394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC----  469 (608)
Q Consensus       394 ~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~----  469 (608)
                      +|+++.+.++.++..+++++.|.|||+|++.||.+.+||+|.+|.+++..  +||.+ +...+.+|++|||++++.    
T Consensus       314 iF~~ce~~lL~elVLklk~qvfSPgDyICrKGdvgkEMyIVk~G~L~Vv~--dDg~t-~~~~L~~G~~FGEisIlni~g~  390 (536)
T KOG0500|consen  314 IFQDCEAGLLVELVLKLKPQVFSPGDYICRKGDVGKEMYIVKEGKLAVVA--DDGVT-VFVTLKAGSVFGEISILNIKGN  390 (536)
T ss_pred             HHHhcchhHHHHHHHHhcceeeCCCCeEEecCcccceEEEEEccEEEEEe--cCCcE-EEEEecCCceeeeeEEEEEcCc
Confidence            99999999999999999999999999999999999999999999999876  56654 678999999999999874    


Q ss_pred             --CCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHH
Q 007323          470 --NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT  509 (608)
Q Consensus       470 --~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~  509 (608)
                        |..|++++++++++.++.++++++.+.+++||+....+.+
T Consensus       391 ~~gNRRtanvrSvGYSDlfvLskdDl~~aL~eYP~a~~~L~~  432 (536)
T KOG0500|consen  391 KNGNRRTANVRSVGYSDLFVLSKDDLWEALSEYPDARKRLEE  432 (536)
T ss_pred             ccCCcceeeeeeeccceeeEeeHHHHHHHHHhCCHHHHHHHH
Confidence              5678999999999999999999999999999998887763

>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.2e-64  Score=486.95  Aligned_cols=443  Identities=22%  Similarity=0.400  Sum_probs=382.7

Q ss_pred             cccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeeccCC--CcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEe
Q 007323           60 FSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL--SKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLI  137 (608)
Q Consensus        60 ~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~--~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i  137 (608)
                      +.++.+|--.+.|+.+|+++++++.+|+++++|+.++|....  ...|..+|.++|+||++||+++|+|.|+.+| |++|
T Consensus       204 KTpPHIiLHYcaFKt~WDWvIL~LTFYTAimVPyNvaFKnk~~~~vs~lvvDSiVDVIF~vDIvLNFHTTFVGPg-GEVv  282 (971)
T KOG0501|consen  204 KTPPHIILHYCAFKTIWDWVILILTFYTAIMVPYNVAFKNKQRNNVSWLVVDSIVDVIFFVDIVLNFHTTFVGPG-GEVV  282 (971)
T ss_pred             CCCCeEEEeeehhhhHHHHHHHHHHHHHHheeeeeeeecccccCceeEEEecchhhhhhhhhhhhhcceeeecCC-Ccee
Confidence            344556666789999999999999999999999999998654  3358899999999999999999999999987 5999


Q ss_pred             eccHHHHHHHhhccchhHhhhhccHHHHHhhcCc----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Q 007323          138 CKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGR----KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLI  213 (608)
Q Consensus       138 ~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~~~----~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~  213 (608)
                      .||+.|+.+|+|+||+||++|++|++++..+.+.    .+.+..|++.||+|+-|+.|-++..     +.|....++.++
T Consensus       283 sdPkvIRmNYlKsWFvIDLLSCLPYDi~naF~~~degI~SLFSaLKVVRLLRLGRVaRKLD~Y-----lEYGAA~LvLLl  357 (971)
T KOG0501|consen  283 SDPKVIRMNYLKSWFVIDLLSCLPYDIFNAFERDDEGIGSLFSALKVVRLLRLGRVARKLDHY-----LEYGAAVLVLLL  357 (971)
T ss_pred             cChhHHhHHHHHHHHHHHHHhcccHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhHHHHHHHH
Confidence            9999999999999999999999999999876543    3466778888888888887766543     235555788889


Q ss_pred             HHHHHHHHHHHHHHHHHhccCCCCC-----CCCceecccccC---CCCccc-----c-cccchHHHHHHHHHHHHHHhhc
Q 007323          214 AVELYCSHIAACIFYYLATTLPPEQ-----EGYTWIGSLKMG---DYSYAD-----F-REIGFWKSYITSMYASVVTMTT  279 (608)
Q Consensus       214 ~~~~~~~h~~ac~~~~~~~~~~~~~-----~~~~w~~~~~~~---~~~~~~-----~-~~~~~~~~Y~~s~y~~~~t~tt  279 (608)
                      +.+.++.||+||+||.++..+..+.     ...+|+-....+   .|+|..     . ...+--..|+.|+||+++.|||
T Consensus       358 C~y~lvAHWlACiWysIGd~ev~~~~~n~i~~dsWL~kLa~~~~tpY~~~~s~~~~~~gGPSr~S~YissLYfTMt~mtt  437 (971)
T KOG0501|consen  358 CVYGLVAHWLACIWYSIGDYEVRDEMDNTIQPDSWLWKLANDIGTPYNYNLSNKGTLVGGPSRTSAYISSLYFTMTCMTT  437 (971)
T ss_pred             HHHHHHHHHHHHhheeccchheecccccccccchHHHHHHhhcCCCceeccCCCceeecCCcccceehhhhhhhhhhhhc
Confidence            9999999999999999987543221     224787655332   233321     0 1123346799999999999999


Q ss_pred             cccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Q 007323          280 VGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQ  358 (608)
Q Consensus       280 vGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~  358 (608)
                      ||||++.|.|..|++|++.+|++|.++||.++|+++.++++ .++...|.+.++++.+||+-.++|+.|.+||.+|..-.
T Consensus       438 vGFGNiA~~TD~EKiF~v~mMii~aLLYAtIFG~vTTI~QQM~s~T~rYHeMlnnVReFlKL~evPK~LsERVMDYvVST  517 (971)
T KOG0501|consen  438 VGFGNIAPNTDNEKIFGVCMMIIGALLYATIFGHVTTIIQQMTSNTNRYHEMLNNVREFLKLYEVPKGLSERVMDYVVST  517 (971)
T ss_pred             ccccccCCCccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 78889999999999999999999999999999999999


Q ss_pred             Hh--ccccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEe
Q 007323          359 YE--SSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCL  436 (608)
Q Consensus       359 ~~--~~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~  436 (608)
                      |.  ++.+.++.+...|+.+|.+|+.+++.+.+..+|.|+--++..++.|+..++..+..|||.|++.|+..+.++||++
T Consensus       518 WaMtkGiDTeKVL~~CPKDMkADICVHLNRKVFnEHpaFRLASDGCLRaLAm~f~~~H~APGDLlYHtGESvDaLcFvVs  597 (971)
T KOG0501|consen  518 WAMTKGIDTEKVLGYCPKDMKADICVHLNRKVFNEHPAFRLASDGCLRALAMEFQTNHCAPGDLLYHTGESVDALCFVVS  597 (971)
T ss_pred             hhhhcCcCHHHHhhhCccccccceeeecchhhhccCcceeeccchhHHHHHHHHHhccCCCcceeeecCCccceEEEEEe
Confidence            96  5778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEeccCCceeeeEEeCCCCeecchhhhcC--CCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          437 GKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCN--IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       437 G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~--~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      |++++...+     .+++.+++||+||..-.-.+  ..+.++++|+++|.+..|.++.+.++++-|..+...+.+++..
T Consensus       598 GSLEVIQDD-----EVVAILGKGDVFGD~FWK~~t~~qs~ANVRALTYcDLH~IKrd~Ll~VLdFYtAFanSFaRNl~L  671 (971)
T KOG0501|consen  598 GSLEVIQDD-----EVVAILGKGDVFGDEFWKENTLGQSAANVRALTYCDLHMIKRDKLLKVLDFYTAFANSFARNLTL  671 (971)
T ss_pred             cceEEeecC-----cEEEEeecCccchhHHhhhhhhhhhhhhhhhhhhhhhhHHhHHHHHHHHHHHHHHHHHhhhceee
Confidence            999998621     27899999999999854332  2346899999999999999999999999999988888777643

>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3.2e-60  Score=461.32  Aligned_cols=421  Identities=24%  Similarity=0.456  Sum_probs=378.0

Q ss_pred             cceEECCCC-hhHHHHHHHHHHHHHHHHHHhchheeeccCCCcC---eehHHHHHHHHHHHHHH-hhceeeEEeCCCcEE
Q 007323           62 RNLVFHPDN-RWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKN---LYVLDIVGQIAFLFDIV-LQFCLAYRDSQTYRL  136 (608)
Q Consensus        62 ~~~~~~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~---~~~~~~~~~~~f~~d~~-~~f~t~~~~~~~~~~  136 (608)
                      ..-.|+|.+ +++..|..++.++..+++|++|+..+|+.+..++   |++.|++||+|+++|++ ++-+..|...|  .+
T Consensus       216 ~~~sidp~~~r~Y~~WL~lVtlaf~~N~w~IPlR~sfPyQT~dN~~~Wli~Dy~cDiIYllDmlf~q~Rl~fvrgG--~~  293 (815)
T KOG0499|consen  216 LPNSIDPYTDRLYLLWLLLVTLAFNWNCWFIPLRLSFPYQTADNIHYWLIADYICDIIYLLDMLFIQPRLQFVRGG--DI  293 (815)
T ss_pred             CCcccCcccchHHHHHHHHHHHHHhhceeEEeeeccCCccccccchhhhhHHHHhhHHHHHHHhhhhhhheeeeCc--eE
Confidence            345789998 9999999999999999999999999998776543   78999999999999985 55677777665  79


Q ss_pred             eeccHHHHHHHhhc-cchhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 007323          137 ICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAV  215 (608)
Q Consensus       137 i~~~~~i~~~yl~~-~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~  215 (608)
                      |.|.+..++||+++ .|-+|++|++|+++.|..+|....+   |+.|++++..++.+++.+++.+...+ +.|+++.+.+
T Consensus       294 ik~kndtrk~Yl~sr~FklDllsiLPldllY~~~G~~p~w---R~~R~lK~~sF~e~~~~Le~i~s~~y-~~RV~rT~~Y  369 (815)
T KOG0499|consen  294 IKDKNDTRKHYLTSRKFKLDLLSILPLDLLYLFFGFNPMW---RANRMLKYTSFFEFNHHLESIMSKAY-IYRVIRTTGY  369 (815)
T ss_pred             EEechHHHHHHHHhhhhhhhHHhhhhHHHHHHHhccchhh---hhhhHHHHHHHHHHHHHHHHHhcchh-hhhhHHHHHH
Confidence            99999999999999 8999999999999999888876654   77888888888888888888766555 4599999999


Q ss_pred             HHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHH
Q 007323          216 ELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVF  295 (608)
Q Consensus       216 ~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~  295 (608)
                      +++.+|+.||+||..+...+-+  .+.|+.+.              ....|+.|+|||+-|+||+| |...|+|..|.+|
T Consensus       370 mlyilHinacvYY~~SayqglG--~~rWVydg--------------~Gn~YiRCyyfa~kt~~tiG-~~P~P~~~~E~Vf  432 (815)
T KOG0499|consen  370 LLYILHINACVYYWASAYQGLG--TTRWVYDG--------------EGNEYIRCYYFAVKTLITIG-GLPEPQTLFEIVF  432 (815)
T ss_pred             HHHHHhhhHHHHHHHHhhcccc--cceeEEcC--------------CCCceeeehhhHHHHHHHhc-CCCCcchHHHHHH
Confidence            9999999999999988765443  45787542              23569999999999999999 9999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhcc--ccHHHHHhhC
Q 007323          296 IMIYVSFDMILGAYLIGNMTALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTEASVLQDI  372 (608)
Q Consensus       296 ~~~~~~~g~~~~a~~i~~i~~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~--~~~~~~l~~l  372 (608)
                      ..+--+.|+++|+.+||++-.++++ +.+++.|+..|+....||++.++|...|+||+.+|+|.|++.  .+|.++++.|
T Consensus       433 ~~~~w~mGVFvFslliGQmRDvi~aAt~nq~~fr~~mD~tl~ym~~~~i~kevqnRVr~WyeyTW~sQr~LDEs~ll~~L  512 (815)
T KOG0499|consen  433 QLLNWFMGVFVFSLLIGQMRDVIGAATANQNYFRACMDDTLAYMNNYSIPKEVQNRVRTWYEYTWDSQRMLDESDLLKTL  512 (815)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhhhhhccccHHHHHHhc
Confidence            9999999999999999999999998 778899999999999999999999999999999999999764  6799999999


Q ss_pred             CHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceee
Q 007323          373 PISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY  452 (608)
Q Consensus       373 p~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~  452 (608)
                      |..||.+++..++...+.++.+|++++.+.+..+..+++.+.|.|||.|++.||.+.+||+|..|.|++.. .++|. .+
T Consensus       513 P~klq~dlAi~V~y~~lSKVqLFq~Cdr~mirDmllrLRsV~yLPgDfVCkKGeiGkEMYIIk~GqvQVlG-Gp~~~-~V  590 (815)
T KOG0499|consen  513 PTKLQLDLAIDVNYSILSKVQLFQGCDRQMIRDMLLRLRSVLYLPGDFVCKKGEIGKEMYIIKHGQVQVLG-GPDGT-KV  590 (815)
T ss_pred             chhheeeeeEEeehhhhhHHHHhhhhHHHHHHHHHHHhhceeecCCceeeecccccceeEEeecceEEEec-CCCCC-EE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986 44554 58


Q ss_pred             eEEeCCCCeecchhhhc---CCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHH
Q 007323          453 VSYLHPNSSFGEVSILC---NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (608)
Q Consensus       453 ~~~l~~G~~fGe~~~~~---~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~i  507 (608)
                      +.++.+|++|||++++.   |..|+++++|.+.|.++.++++++.+++..||+-..-+
T Consensus       591 l~tL~~GsVFGEISLLaigG~nRRTAnV~a~Gf~nLfvL~KkdLneil~~YP~sq~iL  648 (815)
T KOG0499|consen  591 LVTLKAGSVFGEISLLAIGGGNRRTANVVAHGFANLFVLDKKDLNEILVHYPDSQRIL  648 (815)
T ss_pred             EEEecccceeeeeeeeeecCCCccchhhhhcccceeeEecHhHHHHHHHhCccHHHHH
Confidence            99999999999999885   56789999999999999999999999999999755433

>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]

Probab=99.97  E-value=3.3e-30  Score=251.43  Aligned_cols=230  Identities=20%  Similarity=0.284  Sum_probs=177.0

Q ss_pred             ccCCCcccccceEECCCChh-HHHHHHHHHHHH---HHHHHHhchheeeccC-----------------CCcCeehHHHH
Q 007323           53 VLSGFRHFSRNLVFHPDNRW-YRAWTKFILIWA---VYSSIFTPVEFGFFRG-----------------LSKNLYVLDIV  111 (608)
Q Consensus        53 ~~~~~~~~~~~~~~~P~s~~-~~~w~~~~~~~~---~~~~~~~p~~~~f~~~-----------------~~~~~~~~~~~  111 (608)
                      +..++|.+.+..+.+|.|+. ..+...+-++++   +.++++-.. ..|+..                 ....+.++|.+
T Consensus       170 ~~~~~r~rlW~~~E~P~SS~~Ak~fa~~Sv~FVlvSiv~lcL~T~-pe~q~~~~~~~~~~~~~~~~~~~~~p~l~~vE~v  248 (477)
T KOG3713|consen  170 RCGRLRRRLWALLENPGSSLAAKVFAVLSVLFVLVSIVGLCLGTL-PEFQVPDKQGEGLLVNVEKIESEPHPILTYVETV  248 (477)
T ss_pred             ChhhHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHcCC-HhhhchhhccccccccccccCCCCCCchHHHHHH
Confidence            33447778888888999654 344433333333   333333322 122211                 11237799999


Q ss_pred             HHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHhhhhccHHHHHhhc--Cc---------hhHHHHHH
Q 007323          112 GQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS--GR---------KEAVRYLL  179 (608)
Q Consensus       112 ~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f-~iDl~s~lP~~~~~~~~--~~---------~~~~~~l~  179 (608)
                      |.+||++|+++||..+.            .+  .+|+|++. +||++|++||++.+...  +.         ...+++||
T Consensus       249 Ci~WFT~E~llR~~~~P------------~k--~~F~k~pLNIIDllAIlPFYielll~~~~~~~~~~l~~~~~vvrvlR  314 (477)
T KOG3713|consen  249 CIAWFTFEYLLRFLVAP------------NK--LEFFKSPLNIIDLLAILPFYLELLLTLFGGESLKELENAGLVVRVLR  314 (477)
T ss_pred             HHHHHHHHHHHHHHcCc------------hH--HHHHhCcchHHHHHHHHHHHHHHHHHHhccchHHHHhhhhhhHHHHH
Confidence            99999999999976654            34  89999988 99999999999864322  11         14678999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCccccc
Q 007323          180 WIRLYRVRKVSQFFHKMEKD-IRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFR  258 (608)
Q Consensus       180 l~rl~r~~r~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  258 (608)
                      ++|++|++|+.|++.+++.. .+.+..+.++..+++++.+.+-+||.+.|++++.++..                  +|.
T Consensus       315 ~lRI~RI~KLaRhS~GLr~lg~Tlr~S~~ElglLllfL~~GI~iFStlvY~~Ek~~~~~------------------~Ft  376 (477)
T KOG3713|consen  315 VLRILRIFKLARHSTGLRTLGLTLRRSYRELGLLLLFLAVGIVIFSTLVYFAEKDEPDT------------------KFT  376 (477)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC------------------CCc
Confidence            99999999999999999875 45666777899999999999999999999999876542                  233


Q ss_pred             ccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007323          259 EIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (608)
Q Consensus       259 ~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~  321 (608)
                      +++      .|+|||++|||||||||++|.|+.|++++..+++.|+++.|++|..|.+-+...
T Consensus       377 SIP------a~~WWaiVTMTTVGYGDm~P~T~~Gklvas~cil~GVLvlAlPItiIv~nF~~~  433 (477)
T KOG3713|consen  377 SIP------AGFWWAVVTMTTVGYGDMVPVTVLGKLVASLCILCGVLVLALPITIIVNNFSMY  433 (477)
T ss_pred             ccc------chhheeeEEEeeecccCccccccchHHHHHHHHHHhHHHhhcchHhHhhhHHHH
Confidence            444      899999999999999999999999999999999999999999999999888763

>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism]

Probab=99.93  E-value=5.6e-26  Score=221.67  Aligned_cols=277  Identities=16%  Similarity=0.163  Sum_probs=197.5

Q ss_pred             CCccccCCCcccccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeecc--CCCcCeehHHHHHHHHHHHHHHhhcee
Q 007323           49 NRQSVLSGFRHFSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCL  126 (608)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~~f~~d~~~~f~t  126 (608)
                      .|.++.++.+.+.++++..|.+.-...+..+++++++..+++..+...-..  -....++++|++..++|.+|+++|+|.
T Consensus        69 ~Rn~r~Rr~q~~vYN~LERPrGWkaf~YH~~VFllVl~CLILsV~STi~e~~~~a~~~L~~LEiv~IV~Fg~EfivRlWS  148 (654)
T KOG1419|consen   69 QRNARYRRIQNKVYNFLERPRGWKAFLYHFFVFLLVLSCLILSVLSTIEEYEKLASGILYILEIVMIVFFGLEFIVRLWS  148 (654)
T ss_pred             hhhHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344556677899999999999987777777666666555555444321111  123458899999999999999999998


Q ss_pred             eEEeCCCcEEeeccHHHHHHHhhccc-hhHhhhhccHHHHHhhc--C---chhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 007323          127 AYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS--G---RKEAVRYLLWIRLYRVRKVSQFFHKMEKDI  200 (608)
Q Consensus       127 ~~~~~~~~~~i~~~~~i~~~yl~~~f-~iDl~s~lP~~~~~~~~--~---~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~  200 (608)
                      +-+...   .  -.+.-+.+|.+++| +||++.++....++...  +   ..+.++-||++.++|++|+.+-...|+-+-
T Consensus       149 AGC~~r---Y--rG~~GRLrFarkp~cvIDiivi~Asi~vl~~g~qG~vfatSalrslRFlQILRmlr~DRrggTWKLLG  223 (654)
T KOG1419|consen  149 AGCCCR---Y--RGWYGRLRFARKPFCVIDIIVIIASIAVLAAGSQGNVFATSALRSLRFLQILRMLRMDRRGGTWKLLG  223 (654)
T ss_pred             cccccc---c--ccceeeEEeecCCceEEEEeeeeeeeeEEEecCccceeehhhhhhhHHHHHHHHHHhhccCchhhhhh
Confidence            754332   0  01122377889988 99998766654444332  1   134688899999999999998887777666


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhcc
Q 007323          201 RINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTV  280 (608)
Q Consensus       201 ~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttv  280 (608)
                      ++.+...+-+....++.+++.+++..+.|+++.+..+++.                   .+-+..|.+|+||+++|+|||
T Consensus       224 SvV~aH~~ELiTt~YIGFL~LIfsSflVYLaEKd~~~e~~-------------------n~~F~TyADALWWG~ITltTI  284 (654)
T KOG1419|consen  224 SVVYAHSKELITTWYIGFLVLIFSSFLVYLAEKDAQGEGT-------------------NDEFPTYADALWWGVITLTTI  284 (654)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc-------------------cccchhHHHHHHhhheeEEee
Confidence            6667777777778888888888888888877655333221                   134678999999999999999


Q ss_pred             ccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Q 007323          281 GYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHL  355 (608)
Q Consensus       281 Gygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~  355 (608)
                      ||||.+|+||.+++++.++.++|+.+||.+-|++++-+.-...+++.|      ++|-++++.-..|.+-.=+||
T Consensus       285 GYGDk~P~TWlGr~laa~fsligiSFFALPAGILGSGfALKVQeq~RQ------KHf~rrr~pAA~LIQc~WR~y  353 (654)
T KOG1419|consen  285 GYGDKTPQTWLGRLLAACFSLIGISFFALPAGILGSGFALKVQEQHRQ------KHFNRRRNPAASLIQCAWRYY  353 (654)
T ss_pred             ccCCcCcccchhHHHHHHHHHHHHHHHhcccccccchhhhhhHHHHHH------HHHHhhcchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988654311111111      234455555555555544444

>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism]

Probab=99.90  E-value=5.3e-25  Score=203.57  Aligned_cols=180  Identities=19%  Similarity=0.327  Sum_probs=134.5

Q ss_pred             cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHhhhhccHHHHHhhc-------Cc---
Q 007323          103 KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKAS-------GR---  171 (608)
Q Consensus       103 ~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f-~iDl~s~lP~~~~~~~~-------~~---  171 (608)
                      +++++++.+|.+||.+|+++||..+..+              .-|.|+-. +||+++++|+.+.+...       +.   
T Consensus       253 dPFFiVEt~CIiWFtfEllvRf~aCPsK--------------~~Ff~nimNiIDiVaI~PyFitlgtela~q~g~g~~gq  318 (507)
T KOG1545|consen  253 DPFFIVETLCIIWFTFELLVRFFACPSK--------------ATFFRNIMNIIDIVAIIPYFITLGTELAEQQGGGGQGQ  318 (507)
T ss_pred             CchHhHHHHHHHHHhHHHHHHHhcCccH--------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCccch
Confidence            3578999999999999999999887552              44666644 99999999998765421       10   


Q ss_pred             ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecc
Q 007323          172 ----KEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGS  246 (608)
Q Consensus       172 ----~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~  246 (608)
                          ...+|++|+.|++|++|+.|+.++++-+.. .......+..++++++..+-+++...|+.+..+++          
T Consensus       319 qaMSlAILRViRLVRVFRIFKLSRHSkGLQILGqTl~aSmrElgLLIFFlfIgviLFsSavYFAEade~~----------  388 (507)
T KOG1545|consen  319 QAMSLAILRVIRLVRVFRIFKLSRHSKGLQILGQTLRASMRELGLLIFFLFIGVILFSSAVYFAEADEPE----------  388 (507)
T ss_pred             hhhhHHHHHHHHHHHHhhheeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhceeeeeecCCCc----------
Confidence                124566677777777777777777664322 33344566666666666666777777766544333          


Q ss_pred             cccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          247 LKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                              +++.+++      +|||||++|||||||||..|.|..++++..+|.+.|++..|+++-.|.+-+.-
T Consensus       389 --------S~F~SIP------daFWwavVTMTTVGYGDm~P~TvgGKIVGslCAiaGVLTiALPVPVIVsNFny  448 (507)
T KOG1545|consen  389 --------SHFSSIP------DAFWWAVVTMTTVGYGDMVPVTVGGKIVGSLCAIAGVLTIALPVPVIVSNFNY  448 (507)
T ss_pred             --------cCCCcCc------ccceEEEEEEEeeccccceecccCceehhhHHhhhhheEecccccEEEecccc
Confidence                    3444555      99999999999999999999999999999999999999999998877665544

>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism]

Probab=99.80  E-value=3.7e-22  Score=186.52  Aligned_cols=179  Identities=21%  Similarity=0.300  Sum_probs=140.0

Q ss_pred             cCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc-hhHhhhhccHHHHHhhcCchhH---HHHH
Q 007323          103 KNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWDLIYKASGRKEA---VRYL  178 (608)
Q Consensus       103 ~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f-~iDl~s~lP~~~~~~~~~~~~~---~~~l  178 (608)
                      ..++.+|..|.+||..|+++|+..+.            .+  .+|+|+-. +||+++++|+++-+....+.++   +--|
T Consensus       227 ~aFFclDTACVmIFT~EYlLRL~aAP------------sR--~rF~RSvMSiIDVvAIlPYYigLv~t~N~DVSGaFVTL  292 (632)
T KOG4390|consen  227 VAFFCLDTACVMIFTGEYLLRLFAAP------------SR--YRFLRSVMSIIDVVAILPYYIGLVMTDNEDVSGAFVTL  292 (632)
T ss_pred             eeeEEecceeEEEeeHHHHHHHHcCc------------hH--HHHHHHHHHHHHHhhhhhhheEEEecCCccccceeEEE
Confidence            34788999999999999999977653            33  88999965 9999999999987765554432   3346


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccc
Q 007323          179 LWIRLYRVRKVSQFFHKMEKD-IRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADF  257 (608)
Q Consensus       179 ~l~rl~r~~r~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~  257 (608)
                      |++|++|++++.++..+++-+ +.+......+..+++.+.+.+-++|.++||.++....                  ..+
T Consensus       293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLlFSLtMAIIIFATvMfYAEKg~~a------------------t~F  354 (632)
T KOG4390|consen  293 RVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSA------------------TKF  354 (632)
T ss_pred             EeeeeeeeeeecccccccchhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhccccc------------------ccc
Confidence            777777777777777766542 4455566688888888888899999999998764221                  222


Q ss_pred             cccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          258 REIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (608)
Q Consensus       258 ~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~  319 (608)
                      .+++      .|||++++||||.||||..|.|..+++|..++.+.|+++.|+++..|.+-++
T Consensus       355 TsIP------aaFWYTIVTmTTLGYGDMVp~TIaGKIfGsiCSLSGVLVIALPVPvIVSNFS  410 (632)
T KOG4390|consen  355 TSIP------AAFWYTIVTMTTLGYGDMVPSTIAGKIFGSICSLSGVLVIALPVPVIVSNFS  410 (632)
T ss_pred             ccCc------HhHhhheeeeeeccccccchHHHHHHHhhhhhcccceEEEeccccEEEechh
Confidence            2333      8999999999999999999999999999999999999999987766655444

>PRK09392 ftrB transcriptional activator FtrB; Provisional

Probab=99.61  E-value=7e-15  Score=140.66  Aligned_cols=127  Identities=20%  Similarity=0.263  Sum_probs=118.8

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      .+.++.+++|+.++++++..+....+.+.|++|++|+++|++.+.+|+|.+|.++++... +|++..+..+.+|++||+.
T Consensus         6 ~~~l~~~~~f~~L~~~~~~~l~~~~~~~~~~~ge~l~~~g~~~~~~~~v~~G~v~~~~~~-~~~~~~i~~~~~g~~~g~~   84 (236)
T PRK09392          6 LIRLRNLPLFADMADATFERLMRGAFLQRFPPGTMLITEGEPADFLFVVLDGLVELSASS-QDRETTLAILRPVSTFILA   84 (236)
T ss_pred             HHHHhcCccccCCCHHHHHHHHhhcceeecCCCCEEEeCCCccceEEEEEeCEEEEEEcC-CCceEEEEEeCCCchhhhH
Confidence            357899999999999999999999999999999999999999999999999999999864 6677889999999999999


Q ss_pred             hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +++.+.++.+++.|.++|+++.++.+.|.+++.++|.+...++..+..
T Consensus        85 ~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~~~~~~l~~  132 (236)
T PRK09392         85 AVVLDAPYLMSARTLTRSRVLMIPAELVREAMSEDPGFMRAVVFELAG  132 (236)
T ss_pred             HHhCCCCCceEEEEcCceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888777654

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=99.58  E-value=1.1e-14  Score=135.85  Aligned_cols=187  Identities=24%  Similarity=0.331  Sum_probs=127.9

Q ss_pred             hHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhcc-chhHhhhhccHHHHHhhcC--ch---hHHHHHHH
Q 007323          107 VLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSS-FIIDLFSCMPWDLIYKASG--RK---EAVRYLLW  180 (608)
Q Consensus       107 ~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~-f~iDl~s~lP~~~~~~~~~--~~---~~~~~l~l  180 (608)
                      ++|.+++++|++|+++++++....             +++|++++ .++|+++++|..+......  ..   ...+..++
T Consensus         1 ~~~~~~~~~f~~e~~l~~~~~~~~-------------~~~y~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   67 (200)
T PF00520_consen    1 ILEIIFDVIFILEIVLRFFALGFK-------------RRRYFRSWWNWFDFISVIPSIVSVILRSYGSASAQSLLRIFRL   67 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCG--------------GCCCCSHHHHHHHHHHHHHCCHHCCHCSS--HHCHCHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHhccH-------------HHHHhcChhhcccccccccccccccccccccccccceEEEEEe
Confidence            478999999999999999876442             48899985 4899999999865543322  11   23555566


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccc
Q 007323          181 IRLYRVRKVSQFFHKMEKDI-RINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFRE  259 (608)
Q Consensus       181 ~rl~r~~r~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  259 (608)
                      +|++|+.|+.+.++.+.... .......++.+++..+++++|++||+++.+...........++.        .......
T Consensus        68 l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~--------~~~~~~~  139 (200)
T PF00520_consen   68 LRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWD--------SENDIYG  139 (200)
T ss_dssp             HHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS------------SST
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccchhheecccccccccccccc--------ccccccc
Confidence            66666666555555444332 22345567888899999999999999998876543221110100        0012223


Q ss_pred             cchHHHHHHHHHHHHHHhhccccCCcccC-----ChhhHHHH-HHHHHHHHHHHHHHHHHH
Q 007323          260 IGFWKSYITSMYASVVTMTTVGYGDVHAV-----NLREMVFI-MIYVSFDMILGAYLIGNM  314 (608)
Q Consensus       260 ~~~~~~Y~~s~y~~~~t~ttvGygdi~p~-----~~~e~~~~-~~~~~~g~~~~a~~i~~i  314 (608)
                      .+..++|..|+||++.++||.|+||..|.     +..+.++. ++..+.+++++++++|.+
T Consensus       140 ~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi  200 (200)
T PF00520_consen  140 YENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI  200 (200)
T ss_dssp             HHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence            35567899999999999999999999987     88899888 666666678888888764

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor

Probab=99.57  E-value=3.2e-14  Score=119.40  Aligned_cols=114  Identities=32%  Similarity=0.550  Sum_probs=107.4

Q ss_pred             cccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc
Q 007323          394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ  473 (608)
Q Consensus       394 ~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~  473 (608)
                      +|+.++++.+..+...++.+.+.+|++|+.+|++.+.+|+|.+|.++++..+.+|++..+..+.+|++||+..++.+.++
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~~~~~~~~~~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (115)
T cd00038           1 LFSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVGFLGPGDLFGELALLGNGPR   80 (115)
T ss_pred             CcccCCHHHHHHHHhhceeeeeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEecCCccCcChHHHhcCCCC
Confidence            57899999999999999999999999999999999999999999999999888899889999999999999999888889


Q ss_pred             ccEEEEeceeeeEEechhhHHHHHHHhhhcHHHH
Q 007323          474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (608)
Q Consensus       474 ~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~i  507 (608)
                      ..+++|.++|.++.++.+.|.+++.++|.+...+
T Consensus        81 ~~~~~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~  114 (115)
T cd00038          81 SATVRALTDSELLVLPRSDFRRLLQEYPELARRL  114 (115)
T ss_pred             CceEEEcCceEEEEEeHHHHHHHHHHCcHhHHhc
Confidence            9999999999999999999999999999876543

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=99.56  E-value=2.3e-14  Score=142.61  Aligned_cols=209  Identities=17%  Similarity=0.177  Sum_probs=159.9

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      .+++.++|+|+.++++++.+|...+....|.+||+|+..|.+.+++|+|.+|.|++..  ++|.  ++..+..||.||..
T Consensus         6 ~~Fl~~~pPF~~L~~eel~~L~~~l~v~yy~kge~ii~~~~p~~~l~vi~kG~vev~~--~~g~--v~~~~~~gdlFg~~   81 (610)
T COG2905           6 DQFLQQHPPFSQLPAEELEQLMGALEVKYYRKGEIIIYAGSPVHYLYVIRKGVVEVRS--DGGE--VLDRLAAGDLFGFS   81 (610)
T ss_pred             HHHHhcCCCcccCCHHHHHHHHhhhccccccCCCeeecCCCCcceeEEEEeceeeEEc--CCCe--eeeeeccCccccch
Confidence            5789999999999999999999999999999999999999999999999999999876  4443  88999999999999


Q ss_pred             hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhccCc-chhhhhhhcccccccccchhhhhhhhHh
Q 007323          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKE-SDLRLKQLQSDITFHISKHEAELALKVN  544 (608)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~~~-~~~~~~~l~~~~~~~i~~~~~~~~~~L~  544 (608)
                      ++++..+....+.|.+++.++.||++.|.+++.++|.+...+..++.++.. .-.+.++............+.....++.
T Consensus        82 ~l~~~~~~~~~~~aeedsl~y~lp~s~F~ql~~~n~~f~~ff~~~~akR~~~~~~~~~eq~~~e~~~trv~~~~~~~~~~  161 (610)
T COG2905          82 SLFTELNKQRYMAAEEDSLCYLLPKSVFMQLMEENPEFADFFLRSLAKRLRDIADRLAEQGESEFILTRVGEVKTLPAVT  161 (610)
T ss_pred             hhcccCCCcceeEeeccceEEecCHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHhcCCCcc
Confidence            999988888888899999999999999999999999999999888877544 2222222211222222334444555666


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCC-CCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323          545 SAAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG  602 (608)
Q Consensus       545 ~aa~~~~~~~~~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  602 (608)
                      +.......++++.+.+.|++.. ..+.+| .++.+-+   ..+++...+..|-+...+-
T Consensus       162 v~~~~~i~~aa~km~~~gv~s~v~l~~~~-~~~GIvT---~~dl~~~v~~~g~~~~~~V  216 (610)
T COG2905         162 VSPQASIQDAARKMKDEGVSSLVVLDDSG-PLLGIVT---RKDLRSRVIADGRSKTQKV  216 (610)
T ss_pred             cCccCcHHHHHHHHHhcCCCeEEEEcCCC-Cccceee---hHHHHHHHHhcCCCcccch
Confidence            6777778889999999998822 222221 2223222   3467777777776655543

>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional

Probab=99.55  E-value=7.7e-14  Score=131.18  Aligned_cols=118  Identities=16%  Similarity=0.265  Sum_probs=110.2

Q ss_pred             cCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC-Ccc
Q 007323          396 KGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQP  474 (608)
Q Consensus       396 ~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~-~~~  474 (608)
                      +.++++.+.++...++.+.|++|++|+.+|++.+.+|+|.+|.++++..+.+|++..+..+.+|++||+.+++.+. ++.
T Consensus         6 ~~~~~~~~~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~V~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~   85 (211)
T PRK11753          6 KPQTDPTLEWFLSHCHIHKYPAKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS   85 (211)
T ss_pred             CCCCHHHHHHHHhhCeEEEeCCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehhhccCCCCce
Confidence            4689999999999999999999999999999999999999999999988889999999999999999999988764 677


Q ss_pred             cEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       475 ~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      ++++|.++|+++.++.++|.+++..+|.+...+++.+.+
T Consensus        86 ~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~  124 (211)
T PRK11753         86 AWVRAKTACEVAEISYKKFRQLIQVNPDILMALSAQMAR  124 (211)
T ss_pred             EEEEEcCcEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            899999999999999999999999999999888877755

>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ]

Probab=99.52  E-value=9.1e-14  Score=111.38  Aligned_cols=91  Identities=30%  Similarity=0.576  Sum_probs=86.6

Q ss_pred             eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechh
Q 007323          412 EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQ  491 (608)
Q Consensus       412 ~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~  491 (608)
                      .+.|++|++|+++|++.+++|+|++|.++++..+.+|+..++..+.+|++||+.+++.+.++..+++|.++|+++.+|++
T Consensus         1 ~~~~~~g~~i~~~g~~~~~~~~i~~G~v~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~a~~~~~~~~i~~~   80 (91)
T PF00027_consen    1 EKTYKKGEVIYRQGDPCDHIYIILSGEVKVSSINEDGKEQIIFFLGPGDIFGEIELLTGKPSPFTVIALTDSEVLRIPRE   80 (91)
T ss_dssp             -EEESTTEEEEETTSBESEEEEEEESEEEEEEETTTSEEEEEEEEETTEEESGHHHHHTSBBSSEEEESSSEEEEEEEHH
T ss_pred             CeEECCCCEEEeCCCcCCEEEEEEECceEEEeceecceeeeecceeeeccccceeecCCCccEEEEEEccCEEEEEEeHH
Confidence            36899999999999999999999999999999999998888999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHhhh
Q 007323          492 SFTNIIDIYFC  502 (608)
Q Consensus       492 ~~~~ll~~~~~  502 (608)
                      +|.++++++|+
T Consensus        81 ~~~~~~~~~p~   91 (91)
T PF00027_consen   81 DFLQLLQQDPE   91 (91)
T ss_dssp             HHHHHHHHSHH
T ss_pred             HHHHHHHhCcC
Confidence            99999999984

The best studied of these proteins is the prokaryotic catabolite gene activator (also known as the cAMP receptor protein) (gene crp) where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure. There are six invariant amino acids in this domain, three of which are glycine residues that are thought to be essential for maintenance of the structural integrity of the beta-barrel. cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain. The cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain. The cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section. Vertebrate cyclic nucleotide-gated ion-channels also contain this domain. Two such cations channels have been fully characterised, one is found in rod cells where it plays a role in visual signal transduction.; PDB: 1O7F_A 2BYV_E 3E97_A 3U10_A 2H6B_A 3SHR_A 2OZ6_A 1WGP_A 3LA2_A 3LA3_B ....

>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain

Probab=99.51  E-value=3.5e-13  Score=113.90  Aligned_cols=116  Identities=28%  Similarity=0.421  Sum_probs=105.9

Q ss_pred             cccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhh--cCC
Q 007323          394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL--CNI  471 (608)
Q Consensus       394 ~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~--~~~  471 (608)
                      +|.+++++.++.++..++.+.+.+|++|+++|++.+++|+|.+|.++++..+.+|++..+..+.+|++||+.+++  ...
T Consensus         1 ~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~   80 (120)
T smart00100        1 LFKNLDAEELRELADALEPVRYPAGEVIIRQGDVGDSFYIILSGEVRVYKVLEDGREQILGILGPGDFFGELALLTNSRR   80 (120)
T ss_pred             CcCCCCHHHHHHHHHhceEEEeCCCCEEEeCCCcCCcEEEEEeeEEEEEEECCCCceEEEEeecCCceechhhhccCCCc
Confidence            578999999999999999999999999999999999999999999999998888999899999999999999988  345


Q ss_pred             CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHH
Q 007323          472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT  509 (608)
Q Consensus       472 ~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~  509 (608)
                      +...++.+.++|.++.++.+.+......++....+++.
T Consensus        81 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  118 (120)
T smart00100       81 AASATAVALELATLLRIDFRDFLQLLQENPQLLLELLL  118 (120)
T ss_pred             ccceEEEEEeeEEEEccCHHHHHHHHHHhHHHHHHHHh
Confidence            67789999999999999999999999988877665543

Catabolite gene activator protein (CAP) is a prokaryotic homologue of eukaryotic cNMP-binding domains, present in ion channels, and cNMP-dependent kinases.

>PRK10402 DNA-binding transcriptional activator YeiL; Provisional

Probab=99.50  E-value=1.2e-13  Score=130.83  Aligned_cols=111  Identities=17%  Similarity=0.206  Sum_probs=103.6

Q ss_pred             HHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEece
Q 007323          403 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCEL  482 (608)
Q Consensus       403 l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~  482 (608)
                      ..++....+.+.|++|++|+.+||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+.+++.+.++++++.|.++
T Consensus        24 ~~~i~~~~~~~~~~kge~l~~~G~~~~~~y~V~~G~v~v~~~~~~G~e~~~~~~~~g~~~G~~~~~~~~~~~~~~~A~~~  103 (226)
T PRK10402         24 SFDVSADTELFHFLAREYIVQEGQQPSYLFYLTRGRAKLYATLANGKVSLIDFFAAPCFIGEIELIDKDHETKAVQAIEE  103 (226)
T ss_pred             CHHHHhhhhheeeCCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEeeeeecCCCCeEEeehhhcCCCCCccEEEecc
Confidence            34577788899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          483 CRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       483 ~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      |+++.++.++|.+++..+|.+...++..+..
T Consensus       104 ~~i~~i~~~~~~~ll~~~p~~~~~~~~~l~~  134 (226)
T PRK10402        104 CWCLALPMKDCRPLLLNDALFLRKLCKFLSH  134 (226)
T ss_pred             EEEEEEEHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999999888777765

>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]

Probab=99.46  E-value=7.7e-13  Score=124.73  Aligned_cols=124  Identities=23%  Similarity=0.366  Sum_probs=113.3

Q ss_pred             cccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhc
Q 007323          390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC  469 (608)
Q Consensus       390 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~  469 (608)
                      ...+.|...+++....+......+.+++|++|+.+||+.+.+|+|.+|.++++...++|++.++..+++|++||+.+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~fg~~~l~~   82 (214)
T COG0664           3 KENPLLNLLPSELLELLALKLEVRKLPKGEVLFTEGEEADSLYIILSGIVKLYANTEDGREIILGFLGPGDFFGELALLG   82 (214)
T ss_pred             ccccccccCCHHHHHHHhhhceeEeeCCCCEEEcCCCcCceEEEEEEeEEEEEEECCCCcEEEEEEecCCchhhhHHHhc
Confidence            45667777788888888888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          470 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       470 ~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +.++.++++|.++|+++.++++.|.+++.++|.+...++..+..
T Consensus        83 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~p~l~~~l~~~~~~  126 (214)
T COG0664          83 GDPRSASAVALTDVEVLEIPRKDFLELLAESPKLALALLRLLAR  126 (214)
T ss_pred             CCCccceEEEcceEEEEEecHHHHHHHHhhCcHHHHHHHHHHHH
Confidence            88999999999999999999999999887778888888777766

>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional

Probab=99.46  E-value=9.4e-13  Score=125.92  Aligned_cols=124  Identities=14%  Similarity=0.166  Sum_probs=110.7

Q ss_pred             hcccccccCCCHHHHHHHHHHce-eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhh
Q 007323          389 IEKVPLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI  467 (608)
Q Consensus       389 l~~~~~f~~l~~~~l~~l~~~~~-~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~  467 (608)
                      +++.+.|..++++++..|..... .+.|.+|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+.++
T Consensus        15 ~~~~~~~~~l~~~~l~~L~~~~~~~~~~~kge~l~~~Gd~~~~ly~v~~G~v~~~~~~~~G~e~i~~~~~~gd~~g~~~~   94 (235)
T PRK11161         15 ISQLCIPFTLNEHELDQLDNIIERKKPIQKGQTLFKAGDELKSLYAIRSGTIKSYTITEQGDEQITGFHLAGDLVGFDAI   94 (235)
T ss_pred             ccccccccCCCHHHHHHHHHhhhhceeecCCCEeECCCCCcceEEEEeeceEEEEEECCCCCEEEEEeccCCceeccccc
Confidence            55666666799999999998876 46899999999999999999999999999999999999999999999999999776


Q ss_pred             hcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       468 ~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +. .+...++.|.++++++.+|++.|.+++.++|.+...+++.+..
T Consensus        95 ~~-~~~~~~~~a~~~~~i~~ip~~~f~~l~~~~p~~~~~~~~~~~~  139 (235)
T PRK11161         95 GS-GQHPSFAQALETSMVCEIPFETLDDLSGKMPKLRQQIMRLMSG  139 (235)
T ss_pred             cC-CCCcceEEEeccEEEEEEEHHHHHHHHHHChHHHHHHHHHHHH
Confidence            54 4556789999999999999999999999999999988887765

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.42  E-value=3.4e-13  Score=126.62  Aligned_cols=125  Identities=29%  Similarity=0.444  Sum_probs=113.1

Q ss_pred             hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (608)
Q Consensus       385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe  464 (608)
                      ..+.+++.-+|++++++.+.++...+.++.+++|+.|++||+.++.+|+|.+|+++++.   +|+  .+..+.+|..|||
T Consensus       120 L~~a~r~~~LF~~Ld~eq~~~v~dam~~~~v~~G~~Vi~qGdeGd~fYvI~kGt~dVyv---~~~--~v~~~~~g~sFGE  194 (368)
T KOG1113|consen  120 LEEAFRKNLLFANLDDEQLSQVLDAMFEKRVKAGETVIKQGDEGDNFYVIDKGTFDVYV---NGT--YVTTYSPGGSFGE  194 (368)
T ss_pred             HHHHHHhccccccCCHHHHHHHHHhhceeeecCCcEEEecCCcCCcEEEEecceEEEEE---CCe--EEeeeCCCCchhh
Confidence            35678889999999999999999999999999999999999999999999999999998   333  6889999999999


Q ss_pred             hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      .++..+.||.+|+.|.+++.+|.+++..|..++..+....+.++...++.
T Consensus       195 lALmyn~PRaATv~a~t~~klWgldr~SFrrIi~~s~~kkrkMy~~~l~s  244 (368)
T KOG1113|consen  195 LALMYNPPRAATVVAKSLKKLWGLDRTSFRRIIMKSCIKKRKMYEPFLES  244 (368)
T ss_pred             hHhhhCCCcccceeeccccceEEEeeceeEEEeeccchhhhhhhhhhhhc
Confidence            99999999999999999999999999999988877766666776666654

>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.41  E-value=1.1e-13  Score=136.49  Aligned_cols=254  Identities=20%  Similarity=0.327  Sum_probs=155.4

Q ss_pred             ehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccchhHhhhhccHHHHHhhcCchhHHHHHHHHHHHH
Q 007323          106 YVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYR  185 (608)
Q Consensus       106 ~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r  185 (608)
                      ..+|+.+.++|++-+++||..+-..     +        +-++.-.-++|.+.+-|..+......+.-.+|+||.+|+..
T Consensus       165 qqidlafnifflvyffirfiaasdk-----l--------wf~lemys~vdfftippsfvsiyl~r~wlglrflralrlmt  231 (1103)
T KOG1420|consen  165 QQIDLAFNIFFLVYFFIRFIAASDK-----L--------WFWLEMYSVVDFFTIPPSFVSIYLNRSWLGLRFLRALRLMT  231 (1103)
T ss_pred             HHhhhHhhHHHHHHHHHHHhhcccc-----e--------eeeeehhhheeeeecCchheEEEeccchHHHHHHHHHHhcc
Confidence            4689999999999999999876331     0        11122233677777777654333333344577777777777


Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHH
Q 007323          186 VRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKS  265 (608)
Q Consensus       186 ~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  265 (608)
                      +..+.+|++.++...+     .++.+++..++-+....|.+..+++..      +.-|-           ++.+ +....
T Consensus       232 vpdilqylnilktsss-----irl~qlvsifisvwltaag~ihllens------gdp~~-----------~f~n-~hrlt  288 (1103)
T KOG1420|consen  232 VPDILQYLNILKTSSS-----IRLVQLVSIFISVWLTAAGFIHLLENS------GDPWE-----------NFQN-NHRLT  288 (1103)
T ss_pred             HHHHHHHHHHHhccch-----hhHHHHHHHHHHHHHhhcceeehhhcC------CChhH-----------hccC-cccch
Confidence            7778787776654322     266666655555544555555555432      11121           1111 22357


Q ss_pred             HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch-hHHHHHHHHHHHHHHhhCC--
Q 007323          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSK-TEKFRDKMTDLMKYINRNR--  342 (608)
Q Consensus       266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~-~~~~~~~~~~~~~~m~~~~--  342 (608)
                      |+.|.||.++||+||||||++..|..+++|.+++++.|...||-.+..|..++.+..+ .-+|+..-       .+++  
T Consensus       289 yw~cvyfl~vtmstvgygdvyc~t~lgrlfmvffil~glamfasyvpeiielignr~kyggeyk~eh-------gkkhiv  361 (1103)
T KOG1420|consen  289 YWECVYFLMVTMSTVGYGDVYCKTTLGRLFMVFFILGGLAMFASYVPEIIELIGNRKKYGGEYKAEH-------GKKHIV  361 (1103)
T ss_pred             hhheeeeeEEEeeeccccceeehhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHccccccCceeehhc-------CCeeEE
Confidence            9999999999999999999999999999999999999999999999999999987322 11222110       0111  


Q ss_pred             CCHHH-HHHHHHHHHHHHhcc---cc-HHHHHhhCCHHHHHHHHHHHhHhhhcccccccC--CCHHHHHH
Q 007323          343 LGRDI-RDQIIGHLRLQYESS---YT-EASVLQDIPISIRAKISQTLYLPYIEKVPLFKG--CSSEFINQ  405 (608)
Q Consensus       343 l~~~l-~~rv~~y~~~~~~~~---~~-~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~--l~~~~l~~  405 (608)
                      +-.++ -+.|..+++-.-.++   .+ |--++...|++|.-|   .++.+-+.++.+|++  +++-.++.
T Consensus       362 vcghityesvshflkdflhedrddvdvevvflhr~~pdlele---glfkrhft~veffqgtvmnp~dl~r  428 (1103)
T KOG1420|consen  362 VCGHITYESVSHFLKDFLHEDRDDVDVEVVFLHRISPDLELE---GLFKRHFTQVEFFQGTVMNPHDLAR  428 (1103)
T ss_pred             EecceeHHHHHHHHHHHhhccccccceEEEEEecCCCCcchH---HHHhhheeeEEEecccccChhhhhh
Confidence            01111 122222222111222   22 344778888887655   344556677778774  45554443

>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria []

Probab=99.37  E-value=6.1e-12  Score=97.03  Aligned_cols=55  Identities=33%  Similarity=0.617  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~  319 (608)
                      .|.+|+||+++|+||+||||+.|.+..+|+++++.+++|+.++++.++.+++.+.
T Consensus        24 ~~~da~yfs~~t~tTvGyGDi~p~t~~gr~~~~~~~~~G~~~~~~~~~~~~~~l~   78 (79)
T PF07885_consen   24 SFIDALYFSFVTITTVGYGDIVPQTPAGRIFTIIYMLIGIFLFALFLSVLASVLT   78 (79)
T ss_dssp             SHHHHHHHHHHHHTT---SSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcccCCCccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4679999999999999999999999999999999999999999999999988765

; PDB: 1KKD_A 2A0L_A 1ORQ_C 3UKM_C 1LNQ_E 3OUS_A 3LDC_A 3LDD_A 3RBZ_A 3LDE_A ....

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.35  E-value=9.3e-13  Score=129.33  Aligned_cols=127  Identities=22%  Similarity=0.298  Sum_probs=112.6

Q ss_pred             CCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCcee
Q 007323          372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED  451 (608)
Q Consensus       372 lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~  451 (608)
                      +|..-|..=..++..+.+++..+.+++.++++.++..+|.++.|.+|+.|+++||+++++|++.+|.+++..   +|+  
T Consensus       139 l~~~~Kd~~~k~lI~dAi~~NdFLknLd~~Qi~e~v~~Myp~~~~~gs~IIrege~Gs~~yV~aeG~~~V~~---~g~--  213 (732)
T KOG0614|consen  139 LPRYNKDVGAKQLIRDAIQKNDFLKNLDASQIKELVDCMYPVEYRAGSWIIREGEPGSHLYVSAEGELQVSR---EGK--  213 (732)
T ss_pred             cccccCCccHHHHHHHHHHhhHHHHhhhHHHHHHHHHhhCcccccCCcEEEecCCCCceEEEeecceEEEee---CCe--
Confidence            333334344556677888999999999999999999999999999999999999999999999999999986   443  


Q ss_pred             eeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhc
Q 007323          452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCD  503 (608)
Q Consensus       452 ~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~  503 (608)
                      .+..+++|..|||.+++.+.+|+++++|++++.+|.|+++.|+.++......
T Consensus       214 ll~~m~~gtvFGELAILynctRtAsV~alt~~~lWaidR~vFq~IM~~tg~~  265 (732)
T KOG0614|consen  214 LLGKMGAGTVFGELAILYNCTRTASVRALTDVRLWAIDREVFQAIMMRTGLE  265 (732)
T ss_pred             eeeccCCchhhhHHHHHhCCcchhhhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999999999999998875433

>PLN02868 acyl-CoA thioesterase family protein

Probab=99.34  E-value=9e-12  Score=128.61  Aligned_cols=113  Identities=19%  Similarity=0.232  Sum_probs=103.7

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      .++++++++|+++++++++++...++.+.|++|++|+++||..+.+|+|++|.|+++..+.+| +.++..+++|++||+.
T Consensus         7 ~~~L~~~~~F~~L~~~~l~~l~~~~~~~~~~~Ge~I~~~Gd~~~~lyiI~~G~V~v~~~~~~g-e~~l~~l~~Gd~fG~~   85 (413)
T PLN02868          7 VEFLGSVPLLQRLPSSSLKKIAEVVVPKRYGKGEYVVREGEPGDGLYFIWKGEAEVSGPAEEE-SRPEFLLKRYDYFGYG   85 (413)
T ss_pred             HHHHhcCcccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeCEEEEEEECCCC-cEEEEEeCCCCEeehh
Confidence            456889999999999999999999999999999999999999999999999999999988777 6688899999999985


Q ss_pred             hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhh
Q 007323          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYF  501 (608)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~  501 (608)
                        +.+.++.++++|.++|+++.++++.|..+...++
T Consensus        86 --l~~~~~~~~~~A~~d~~v~~ip~~~~~~~~~~~~  119 (413)
T PLN02868         86 --LSGSVHSADVVAVSELTCLVLPHEHCHLLSPKSI  119 (413)
T ss_pred             --hCCCCcccEEEECCCEEEEEEcHHHHhhhccccc
Confidence              6788899999999999999999999988776554

>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]

Probab=99.33  E-value=2.1e-12  Score=126.94  Aligned_cols=122  Identities=22%  Similarity=0.375  Sum_probs=109.5

Q ss_pred             HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccC-CceeeeEEeCCCCe
Q 007323          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN-GTEDYVSYLHPNSS  461 (608)
Q Consensus       383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~-g~~~~~~~l~~G~~  461 (608)
                      +.+..+|+.+|+|.+++++.+..++..++...|..|++|+++|+.++.+|+|.+|.|.+...++. +++..+..+..||+
T Consensus       268 ~~~~~fLrsv~~~q~l~Ee~L~KiaD~le~~~Yd~g~yIirqge~G~~ffii~~G~V~vtq~~e~~~q~~~lr~l~kGd~  347 (732)
T KOG0614|consen  268 EQYMNFLRSVPLFQNLPEELLLKIADVLEEEYYDAGEYIIRQGEKGDTFFIISKGTVKVTQQDEGSTQPQELRTLNKGDY  347 (732)
T ss_pred             HHHHHHHHhhhhhccCCHHHHHHHHHHHHHHhhcCCceEEeecCCCCeEEEEecceEEEeecCCCCCchhHHhhccccch
Confidence            34568899999999999999999999999999999999999999999999999999999886654 56778999999999


Q ss_pred             ecchhhhcCCCcccEEEEece-eeeEEechhhHHHHHHHhhhcH
Q 007323          462 FGEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIYFCDG  504 (608)
Q Consensus       462 fGe~~~~~~~~~~~~~~a~~~-~~l~~l~~~~~~~ll~~~~~~~  504 (608)
                      |||-+++....|++++.|..+ ++++.++++.|..++....++.
T Consensus       348 FGE~al~~edvRtAniia~~~gv~cl~lDresF~~liG~l~~l~  391 (732)
T KOG0614|consen  348 FGERALLGEDVRTANIIAQAPGVECLTLDRESFKKLIGDLEELK  391 (732)
T ss_pred             hhHHHhhccCccchhhhccCCCceEEEecHHHHHHhcccHHHhh
Confidence            999999999999999999887 9999999999988876544433

>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial

Probab=99.30  E-value=1.4e-11  Score=113.93  Aligned_cols=96  Identities=23%  Similarity=0.294  Sum_probs=89.5

Q ss_pred             CCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc--ccEEEEeceeeeEEechhhHHH
Q 007323          418 GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--PYTVQVCELCRLLRIDKQSFTN  495 (608)
Q Consensus       418 g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~--~~~~~a~~~~~l~~l~~~~~~~  495 (608)
                      |++|+++||+.+++|+|.+|.|+++..+++|++.++..+.+|++||+.+++.+.+.  .+++.|.++|+++.+|.++|.+
T Consensus         1 g~~l~~~g~~~~~~~~i~~G~v~~~~~~~~G~e~~l~~~~~g~~~G~~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~   80 (193)
T TIGR03697         1 GKTIFFPGDPAEKVYFLRRGAVKLSRVYESGEEITVALLRENSVFGVLSLITGHRSDRFYHAVAFTRVELLAVPIEQVEK   80 (193)
T ss_pred             CCceecCCCCCCcEEEEEecEEEEEEeCCCCcEeeeEEccCCCEeeeeeeccCCCCccceEEEEecceEEEEeeHHHHHH
Confidence            78999999999999999999999999999999999999999999999999887754  4789999999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHhc
Q 007323          496 IIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       496 ll~~~~~~~~~il~~l~~  513 (608)
                      ++.++|.+...+++.+..
T Consensus        81 l~~~~p~l~~~~~~~l~~   98 (193)
T TIGR03697        81 AIEEDPDLSMLLLQGLSS   98 (193)
T ss_pred             HHHHChHHHHHHHHHHHH
Confidence            999999999999887765

Members of this protein family, found in the cyanobacteria, are the global nitrogen regulator NtcA. This DNA-binding transcriptional regulator is required for expressing many different ammonia-repressible genes. The consensus NtcA-binding site is G T A N(8)T A C.

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.30  E-value=2.7e-09  Score=120.33  Aligned_cols=80  Identities=15%  Similarity=0.146  Sum_probs=69.1

Q ss_pred             cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHH----------------------------
Q 007323          529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA----------------------------  580 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~----------------------------  580 (608)
                      ..+.+..+..+.+|+|.|+..++.+.++.|+++|+++|..|..|+||||.|+                            
T Consensus       548 G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~  627 (823)
T PLN03192        548 KLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLC  627 (823)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHH
Confidence            3445677788899999999999999999999999999999999999988554                            


Q ss_pred             ---hcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          581 ---SRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       581 ---~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                         ..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus       628 ~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~Tp  658 (823)
T PLN03192        628 TAAKRNDLTAMKELLKQGLNVDSEDHQGATA  658 (823)
T ss_pred             HHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence               4555666777889999999999999985

>PRK09391 fixK transcriptional regulator FixK; Provisional

Probab=99.28  E-value=2.7e-11  Score=114.97  Aligned_cols=105  Identities=17%  Similarity=0.187  Sum_probs=95.8

Q ss_pred             HHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeee
Q 007323          406 IVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRL  485 (608)
Q Consensus       406 l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l  485 (608)
                      +....+.+.|++|++|+.+||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+.   .+.++.++++|+++|++
T Consensus        34 ~~~~~~~~~~~kge~l~~~Gd~~~~ly~I~~G~vkl~~~~~~G~e~i~~~~~~Gd~fG~~---~~~~~~~~~~A~~ds~v  110 (230)
T PRK09391         34 AGLVASEFSYKKGEEIYGEGEPADYVYQVESGAVRTYRLLSDGRRQIGAFHLPGDVFGLE---SGSTHRFTAEAIVDTTV  110 (230)
T ss_pred             ccceeeeEEECCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCceeccc---CCCcCCeEEEEcCceEE
Confidence            344567899999999999999999999999999999999999999999999999999964   46677899999999999


Q ss_pred             EEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          486 LRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       486 ~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +.++.+.|.+++..+|.+...++..+..
T Consensus       111 ~~i~~~~f~~l~~~~p~l~~~l~~~l~~  138 (230)
T PRK09391        111 RLIKRRSLEQAAATDVDVARALLSLTAG  138 (230)
T ss_pred             EEEEHHHHHHHHhhChHHHHHHHHHHHH
Confidence            9999999999999999999998887765

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.23  E-value=1.4e-11  Score=103.42  Aligned_cols=83  Identities=25%  Similarity=0.418  Sum_probs=76.7

Q ss_pred             ccccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCC
Q 007323          526 SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI  605 (608)
Q Consensus       526 ~~~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  605 (608)
                      .+..-+++.+|.+..+|+|.|+.+++++.++.|+..|++++++...||||||.||.-++.+++.+|+++|||+|+.....
T Consensus        84 ~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~  163 (228)
T KOG0512|consen   84 SEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGL  163 (228)
T ss_pred             HhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhccCccccccccc
Confidence            34455688899999999999999999999999999999999999999999999999999999999999999999998777


Q ss_pred             CCC
Q 007323          606 MQI  608 (608)
Q Consensus       606 ~T~  608 (608)
                      +|+
T Consensus       164 ltp  166 (228)
T KOG0512|consen  164 LTP  166 (228)
T ss_pred             chh
Confidence            664

>PRK13918 CRP/FNR family transcriptional regulator; Provisional

Probab=99.21  E-value=8.6e-11  Score=109.56  Aligned_cols=98  Identities=20%  Similarity=0.318  Sum_probs=84.6

Q ss_pred             HceeeeecCCCeEEccCC--ccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeE
Q 007323          409 RLHEEFFLPGEVIMEKGN--VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLL  486 (608)
Q Consensus       409 ~~~~~~~~~g~~i~~~g~--~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~  486 (608)
                      ..+.+.|++|++|+++||  +.+++|+|++|.|+++..+.+|++.++..+.||++||+.+++ +.++++++.|.++|+++
T Consensus         5 ~~~~~~~~kg~~l~~~Gd~~~~~~~y~I~~G~vr~~~~~~~G~e~~l~~~~~Gd~~G~~~~~-~~~~~~~~~A~~~~~v~   83 (202)
T PRK13918          5 VVDTVTYRPGAVILYPGVPGPSDMLYRVRSGLVRLHTVDDEGNALTLRYVRPGEYFGEEALA-GAERAYFAEAVTDSRID   83 (202)
T ss_pred             ccceeEecCCCEEEcCCCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCeechHHhc-CCCCCceEEEcCceEEE
Confidence            456789999999999999  679999999999999999999999999999999999997664 57888999999999999


Q ss_pred             EechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          487 RIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       487 ~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      .++.+.|      +|.+...++..+..
T Consensus        84 ~i~~~~~------~~~~~~~l~~~l~~  104 (202)
T PRK13918         84 VLNPALM------SAEDNLVLTQHLVR  104 (202)
T ss_pred             EEEHHHc------ChhhHHHHHHHHHH
Confidence            9999887      35555555555543

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=1.4e-11  Score=104.34  Aligned_cols=85  Identities=24%  Similarity=0.257  Sum_probs=57.8

Q ss_pred             hcccccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC
Q 007323          524 LQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN  603 (608)
Q Consensus       524 l~~~~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  603 (608)
                      +......+.+.....+.+++|+|+..+..+++++|+++|+.++..|..|.||||-|+..|..+++++|+..||.+|..|.
T Consensus        91 Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk  170 (226)
T KOG4412|consen   91 LLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDK  170 (226)
T ss_pred             HhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccc
Confidence            33333455555556666777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCC
Q 007323          604 SIMQI  608 (608)
Q Consensus       604 ~g~T~  608 (608)
                      .|+|+
T Consensus       171 ~G~Tp  175 (226)
T KOG4412|consen  171 YGFTP  175 (226)
T ss_pred             cCccH
Confidence            77764

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=3.5e-11  Score=102.04  Aligned_cols=79  Identities=27%  Similarity=0.318  Sum_probs=69.8

Q ss_pred             cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ...++..|....+|+|.|+..|.++++++|+..|+.+|..|..|+||||.|...|+.+...+|+++|||++..|++| |+
T Consensus       129 ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~  207 (226)
T KOG4412|consen  129 GALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TA  207 (226)
T ss_pred             CCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-ch
Confidence            35667788888899999999999999999999999999999999999999988889999999999999999999888 63

>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=2e-10  Score=108.21  Aligned_cols=114  Identities=22%  Similarity=0.415  Sum_probs=104.5

Q ss_pred             HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (608)
Q Consensus       383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f  462 (608)
                      .++.+.|+++|+++.|...+...++..+.++.|.+|+.|..+|+.++.+|+|.+|.|.+.... +|  ..+ .++.|++|
T Consensus       236 kMy~~~l~s~pil~~l~k~er~kv~dal~~k~y~~G~~Vi~qg~~ge~f~~i~eGEvdv~~~~-~~--v~v-kl~~~dyf  311 (368)
T KOG1113|consen  236 KMYEPFLESVPILESLEKLERAKVADALGTKSYKDGERVIVQGDQGEHFYIIEEGEVDVLKKR-DG--VEV-KLKKGDYF  311 (368)
T ss_pred             hhhhhhhhcchhhHHHHHHHHHhhhcccceeeccCCceEEeccCCcceEEEecccccchhhcc-CC--eEE-Eechhhhc
Confidence            356788999999999999999999999999999999999999999999999999999988743 33  445 99999999


Q ss_pred             cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHh
Q 007323          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY  500 (608)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~  500 (608)
                      ||.+++.+.|+.+++.|.+...|..++++.|+.++.-.
T Consensus       312 ge~al~~~~pr~Atv~a~~~~kc~~~dk~~ferllgpc  349 (368)
T KOG1113|consen  312 GELALLKNLPRAATVVAKGRLKCAKLDKPRFERLLGPC  349 (368)
T ss_pred             chHHHHhhchhhceeeccCCceeeeeChHHHHHHhhHH
Confidence            99999999999999999999999999999999988754

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.05  E-value=1.1e-10  Score=82.96  Aligned_cols=51  Identities=39%  Similarity=0.539  Sum_probs=30.0

Q ss_pred             HHHcC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          558 LIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       558 Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      |+++| ++++..|..|.||||+|+..|+.+++++|+++|+|++++|.+|+|+
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tp   52 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTP   52 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--H
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCH
Confidence            45677 8999999999999999999999999999999999999999999985

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.03  E-value=3.5e-10  Score=114.75  Aligned_cols=80  Identities=29%  Similarity=0.313  Sum_probs=66.5

Q ss_pred             cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ....+..|.++.+.+|+||.+++++++++|+++|+++|+.+ ..+.||||+|+..|+..+|.+|+++|||++++|.+|.|
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~  147 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLT  147 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCc
Confidence            44556666778888888888888888888888888888887 66888888888888888888888888888888888876


Q ss_pred             C
Q 007323          608 I  608 (608)
Q Consensus       608 ~  608 (608)
                      +
T Consensus       148 ~  148 (600)
T KOG0509|consen  148 P  148 (600)
T ss_pred             H
Confidence            3

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.99  E-value=1.6e-09  Score=86.04  Aligned_cols=64  Identities=34%  Similarity=0.533  Sum_probs=58.5

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG  602 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  602 (608)
                      ..+++|+|+..+..+.++.|++.|++++..|..|+||||.|+..|+.+++++|+++|++++.+|
T Consensus        26 ~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   26 GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-TTSS-
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            4459999999999999999999999999999999999999999999999999999999999886

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.98  E-value=8.6e-10  Score=82.62  Aligned_cols=70  Identities=29%  Similarity=0.288  Sum_probs=65.7

Q ss_pred             hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ..++|+|+|+..|.++..++++..|++++.+|..|.|||-.|+-.||.+||++|+++|||-.++.-+|.|
T Consensus        33 ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~  102 (117)
T KOG4214|consen   33 GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTA  102 (117)
T ss_pred             CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchh
Confidence            5688999999999999999999999999999999999999999999999999999999998887777754

>PRK10537 voltage-gated potassium channel; Provisional

Probab=98.96  E-value=2e-08  Score=101.50  Aligned_cols=54  Identities=31%  Similarity=0.461  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI  318 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~  318 (608)
                      .+.+|+||+++|+||+||||+.|.+..+++++++++++|+.++++.++.+..-+
T Consensus       168 s~~dA~y~svvt~tTvGyGdi~p~t~~grl~~i~~ii~Gi~vf~~~is~i~~p~  221 (393)
T PRK10537        168 SLSTAFYFSIVTMSTVGYGDIVPVSESARLFTISVIILGITVFATSISAIFGPV  221 (393)
T ss_pred             CHHHHHHhhheeeecccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466999999999999999999999999999999999999999999988877643

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.87  E-value=6.8e-09  Score=100.53  Aligned_cols=73  Identities=26%  Similarity=0.288  Sum_probs=68.2

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCC-CCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +..+.+|+|.|+..+..+.++.|+++|++++.. +..|.||||.|+..++.+++++|+.+||+++.+|..|+|+
T Consensus        67 d~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~Tp  140 (300)
T PHA02884         67 ENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTP  140 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            346789999999999999999999999999986 4679999999999999999999999999999999999985

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.87  E-value=8.2e-09  Score=97.41  Aligned_cols=72  Identities=29%  Similarity=0.353  Sum_probs=67.9

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhc-CCCCCCcCCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGNSIMQ  607 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~T  607 (608)
                      ...+.+.|+.|+.+|+.++++.|+.+|+|+|..|.+|.|+|++|+++||++++++|+.. ++|+...|.+|.|
T Consensus       337 sQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgST  409 (452)
T KOG0514|consen  337 SQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGST  409 (452)
T ss_pred             hhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCch
Confidence            35678899999999999999999999999999999999999999999999999999975 8999999999988

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.86  E-value=4.3e-09  Score=74.40  Aligned_cols=53  Identities=42%  Similarity=0.595  Sum_probs=45.0

Q ss_pred             hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHH
Q 007323          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI  592 (608)
Q Consensus       540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll  592 (608)
                      .+++|.|+..++.+.++.+++.|++++..|.+|.||||.|+..|+.+++++|+
T Consensus         2 ~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    2 RTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             ChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            47899999999999999999999999999999999999999999999999986

...

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.80  E-value=4.6e-09  Score=95.73  Aligned_cols=80  Identities=25%  Similarity=0.306  Sum_probs=54.4

Q ss_pred             cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .-+.+..|..+..|+|++|..|+...+++|+..|+.+|..+....||||+|+.+||.++|+.|++..||+|+.|..|.|+
T Consensus        24 ehdln~gddhgfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntp  103 (448)
T KOG0195|consen   24 EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTP  103 (448)
T ss_pred             ccccccccccCcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCc
Confidence            33445555666667777777777777777777777777666666677777777777777777777777777777766664

>PHA02741 hypothetical protein; Provisional

Probab=98.80  E-value=1.7e-08  Score=90.88  Aligned_cols=79  Identities=23%  Similarity=0.326  Sum_probs=70.6

Q ss_pred             ccccchhhhhhhhHhHHHhcCC----HHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHh-cCCCCCCcCC
Q 007323          530 FHISKHEAELALKVNSAAYHGD----LYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGN  603 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~----~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~  603 (608)
                      ..++..+..+.+|+|.|+..++    .+.++.|+..|++++..+. .|+||||.|+..++.+++++|+. .|++++.+|.
T Consensus        51 a~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~  130 (169)
T PHA02741         51 AALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNA  130 (169)
T ss_pred             hhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCC
Confidence            3455667778899999999988    5889999999999999885 89999999999999999999997 5999999999


Q ss_pred             CCCCC
Q 007323          604 SIMQI  608 (608)
Q Consensus       604 ~g~T~  608 (608)
                      +|+|+
T Consensus       131 ~g~tp  135 (169)
T PHA02741        131 DNKSP  135 (169)
T ss_pred             CCCCH
Confidence            99985

>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]

Probab=98.76  E-value=3e-06  Score=83.21  Aligned_cols=91  Identities=12%  Similarity=0.251  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhC
Q 007323          262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRN  341 (608)
Q Consensus       262 ~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~  341 (608)
                      .-..|+.++|....|..++||||+.|.|..++.++++.-++|.++.|.+++.++-.+       +..+--+.+++||-..
T Consensus       284 ~~~~~~nsmWli~iTFlsiGYGDiVP~TycGr~v~l~tGivGa~~sallvAvisRKL-------eLt~aEKhVhNFMmDt  356 (489)
T KOG3684|consen  284 VTINYLNSMWLIAITFLSIGYGDIVPNTYCGRGVALLTGIVGAGCSSLLVAVIARKL-------ELTKAEKHVHNFMMDT  356 (489)
T ss_pred             hHHHHHhhHHHHHHHHhhcccCcccCCccccchHHHHhhhhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence            346799999999999999999999999999999999999999999999988886544       3344445677788777


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 007323          342 RLGRDIRDQIIGHLRLQY  359 (608)
Q Consensus       342 ~l~~~l~~rv~~y~~~~~  359 (608)
                      ++-+++++-.-+-++..|
T Consensus       357 qLTk~~KnAAA~VLqeTW  374 (489)
T KOG3684|consen  357 QLTKEHKNAAANVLQETW  374 (489)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            777777666666655555

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=98.75  E-value=2.5e-08  Score=79.15  Aligned_cols=62  Identities=37%  Similarity=0.501  Sum_probs=57.5

Q ss_pred             HhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       543 L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ||.|+..++.+.++.+++.+.+++.    |.||||+|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   62 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTA   62 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCH
Confidence            5789999999999999999988876    8899999999999999999999999999999999984

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=98.74  E-value=1.1e-08  Score=112.84  Aligned_cols=79  Identities=24%  Similarity=0.310  Sum_probs=73.5

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ......+....+|+|.|+..++..++++|+++|++++.++..|+||||.|+..|+.+|+++|+++||++|+.|.+|.|+
T Consensus       531 a~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~Tp  609 (1143)
T KOG4177|consen  531 ANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTP  609 (1143)
T ss_pred             CceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcch
Confidence            3445566777899999999999999999999999999999999999999999999999999999999999999999985

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.74  E-value=8.9e-09  Score=100.38  Aligned_cols=73  Identities=25%  Similarity=0.417  Sum_probs=50.6

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ......+|+--||..|+.+.+++|+++|+|++..|..|.|.||+||.+|+.+++++|++.|||+|.++..|.|
T Consensus       113 tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNT  185 (615)
T KOG0508|consen  113 TTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNT  185 (615)
T ss_pred             ccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCch
Confidence            3333446666677777777777777777777777777777777777777777777777777777777777766

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.73  E-value=1.7e-08  Score=90.33  Aligned_cols=78  Identities=18%  Similarity=0.129  Sum_probs=63.7

Q ss_pred             ccccchh-hhhhhhHhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          530 FHISKHE-AELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       530 ~~i~~~~-~~~~~~L~~aa~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ..++..+ ....+|+|+|+..+..+.+++|+. .|++++..+..|.||||+|+..++.+++++|+.+||+++.++..|..
T Consensus        84 adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         84 ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            3445555 467888888888888888888885 78888888888889999998888888889888889998888877753

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=98.73  E-value=1.4e-08  Score=103.39  Aligned_cols=71  Identities=34%  Similarity=0.505  Sum_probs=68.5

Q ss_pred             hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      -..+|+|+|+..|+..++..|+++||+++.+|..|.+|+|.|+..|+.-+|-+|+.+|+|+|.+|.+|+|+
T Consensus       111 l~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTp  181 (600)
T KOG0509|consen  111 LGSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTP  181 (600)
T ss_pred             CCCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCH
Confidence            35789999999999999999999999999999999999999999999999999999999999999999995

>PHA02791 ankyrin-like protein; Provisional

Probab=98.71  E-value=2.9e-08  Score=96.27  Aligned_cols=67  Identities=15%  Similarity=0.070  Sum_probs=63.7

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchH-HhHHHhcCcHHHHHHHHhcCCCCCCcCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSP-LHLAASRGYEEIMTFLIQKGVDINLKGNSI  605 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tp-L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  605 (608)
                      +.+|+|.|+..++.+.++.|+++|++++..|..|.|| ||.|+..|+.+++++|+++||++|++|.+|
T Consensus       160 g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~~~  227 (284)
T PHA02791        160 LLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNLEN  227 (284)
T ss_pred             CccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcccC
Confidence            5799999999999999999999999999999999877 999999999999999999999999999865

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.70  E-value=1.7e-08  Score=99.55  Aligned_cols=71  Identities=28%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG  602 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  602 (608)
                      .+..+.++.++||.|...++.+++++|+..|+++|+.|.+||||||+|++.++..+|+.|+++||-+-+..
T Consensus       576 pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsT  646 (752)
T KOG0515|consen  576 PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFAST  646 (752)
T ss_pred             CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeee
Confidence            34455778899999999999999999999999999999999999999999999999999999999877654

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=98.69  E-value=1.5e-08  Score=92.48  Aligned_cols=76  Identities=28%  Similarity=0.345  Sum_probs=70.3

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +..+....+|+|.|+..|+.++++.|++..+|+|+.+..|.||||+||--|+..+++-|++.||.+++.|++|.|+
T Consensus        61 n~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tp  136 (448)
T KOG0195|consen   61 NSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTP  136 (448)
T ss_pred             ccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCc
Confidence            3344455689999999999999999999999999999999999999999999999999999999999999999985

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.69  E-value=3.8e-08  Score=91.73  Aligned_cols=78  Identities=19%  Similarity=0.208  Sum_probs=68.7

Q ss_pred             cccchhhhhhhhHhHHHh--cCCHHHHHHHHHcCCCCCCCCCCCchHHhH-HHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          531 HISKHEAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHL-AASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~--~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~-A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      .++..+..+.+|+|.++.  .+..+.++.|++.|++++..|..|.||||. |+..++.+++++|+++|++++.+|..|+|
T Consensus       115 din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~t  194 (209)
T PHA02859        115 SITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYN  194 (209)
T ss_pred             CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            455566778899998765  468999999999999999999999999996 56678999999999999999999999998


Q ss_pred             C
Q 007323          608 I  608 (608)
Q Consensus       608 ~  608 (608)
                      +
T Consensus       195 p  195 (209)
T PHA02859        195 C  195 (209)
T ss_pred             H
Confidence            5

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.68  E-value=2.1e-08  Score=87.98  Aligned_cols=77  Identities=25%  Similarity=0.288  Sum_probs=56.9

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +|..|..+.+|+.+|+..|+++++++|++.|++++.......++|++|+..|..++|++|+.++.|+|.-|.+|-|+
T Consensus       153 VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTp  229 (296)
T KOG0502|consen  153 VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTP  229 (296)
T ss_pred             ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCce
Confidence            55666777777777777777777777777777777777666777777777777777777777777777777777663

>PHA02795 ankyrin-like protein; Provisional

Probab=98.68  E-value=3.4e-08  Score=99.71  Aligned_cols=70  Identities=20%  Similarity=0.139  Sum_probs=66.4

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+++|.++..+..+.++.|+.+|+++|..|..|.||||.|+..|+.+++++|+++||++|++|..|+|+
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~Tp  257 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTC  257 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            4467888999999999999999999999999999999999999999999999999999999999999985

>PF13606 Ank_3: Ankyrin repeat

Probab=98.67  E-value=2.6e-08  Score=60.08  Aligned_cols=30  Identities=50%  Similarity=0.917  Sum_probs=28.4

Q ss_pred             CCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323          571 DGRSPLHLAASRGYEEIMTFLIQKGVDINL  600 (608)
Q Consensus       571 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  600 (608)
                      +|+||||+|+..|+.+++++|+++|+|+|+
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            589999999999999999999999999984

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=98.66  E-value=2.6e-08  Score=104.39  Aligned_cols=114  Identities=23%  Similarity=0.304  Sum_probs=103.0

Q ss_pred             HHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEe
Q 007323          401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC  480 (608)
Q Consensus       401 ~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~  480 (608)
                      .++..+-..+......+|+.++++||..+++|+|+.|+++-......|+..++..++.||.+|+...+.+.+|..|+.|+
T Consensus       499 p~lr~~D~AldWv~l~~g~alyrqgD~Sd~iyvVl~GRlRsv~~~~~~k~~i~~EygrGd~iG~~E~lt~~~R~tTv~Av  578 (1158)
T KOG2968|consen  499 PFLRKLDFALDWVRLEPGQALYRQGDSSDSIYVVLNGRLRSVIRQSGGKKEIVGEYGRGDLIGEVEMLTKQPRATTVMAV  578 (1158)
T ss_pred             HHHhhhhhhcceEEeccccHHHhcCCccCcEEEEecCeehhhhhccCccchhhhhccCcceeehhHHhhcCCccceEEEE
Confidence            45556666788899999999999999999999999999998876667777789999999999999999999999999999


Q ss_pred             ceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       481 ~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      .++++.+||...|..+..+||+...++.+-+.++
T Consensus       579 RdSelariPe~l~~~ik~ryP~v~~rl~~ll~~~  612 (1158)
T KOG2968|consen  579 RDSELARIPEGLLNFIKLRYPQVVTRLIKLLAEK  612 (1158)
T ss_pred             eehhhhhccHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999999999999999999998887777664

>PHA02791 ankyrin-like protein; Provisional

Probab=98.66  E-value=6e-08  Score=94.07  Aligned_cols=67  Identities=19%  Similarity=0.262  Sum_probs=59.0

Q ss_pred             hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM  606 (608)
Q Consensus       540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  606 (608)
                      .+|+|.|+..++.+.++.|+..|++++..|..|+||||+|+..|+.+++++|+++|++++.++..|+
T Consensus        62 ~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~  128 (284)
T PHA02791         62 EFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGW  128 (284)
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCC
Confidence            5888888888888999988888888888888899999999999999999999988998888888776

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.66  E-value=4.3e-08  Score=104.16  Aligned_cols=78  Identities=22%  Similarity=0.319  Sum_probs=55.5

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhc-CcHHHHHHHHhcCCCCCCcCC-CCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR-GYEEIMTFLIQKGVDINLKGN-SIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~-~~~~~v~~Ll~~ga~~~~~~~-~g~T~  608 (608)
                      .++..+..+.+|+|.|+..++.+.++.|++.|++++..|..|.||||+|+.. ++.+++++|+++|+++|.++. .|.|+
T Consensus       193 d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~Tp  272 (477)
T PHA02878        193 NVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTA  272 (477)
T ss_pred             CCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCH
Confidence            3444555666777777777777777777777777777777777777777754 567777777777777777764 67664

>PHA02946 ankyin-like protein; Provisional

Probab=98.65  E-value=8.2e-08  Score=100.18  Aligned_cols=79  Identities=20%  Similarity=0.241  Sum_probs=68.1

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC--cHHHHHHHHhcCCCCCC-cCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGVDINL-KGNSIM  606 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~ga~~~~-~~~~g~  606 (608)
                      ..++..+..+.+|||+|+..++.+.++.|+++|++++..|..|.||||+|+..+  ..+++++|+++||++|. .|.+|.
T Consensus        63 advn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~  142 (446)
T PHA02946         63 YSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGC  142 (446)
T ss_pred             CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCC
Confidence            455667778899999999999999999999999999999999999999988765  47889999999999985 577777


Q ss_pred             CC
Q 007323          607 QI  608 (608)
Q Consensus       607 T~  608 (608)
                      |+
T Consensus       143 tp  144 (446)
T PHA02946        143 GP  144 (446)
T ss_pred             cH
Confidence            63

>PHA02743 Viral ankyrin protein; Provisional

Probab=98.64  E-value=7.7e-08  Score=86.10  Aligned_cols=77  Identities=22%  Similarity=0.256  Sum_probs=68.0

Q ss_pred             ccchhhhhhhhHhHHHhcCCHH---HHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHh-cCCCCCCcCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLY---QLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIM  606 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~---~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~  606 (608)
                      ++..+..+.+|+|+|+..+..+   .+++|+..|++++..| ..|.||||+|+..++.+++++|+. .|++++.+|.+|+
T Consensus        50 ~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~  129 (166)
T PHA02743         50 LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHE  129 (166)
T ss_pred             hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCC
Confidence            4455667899999999987754   4789999999999998 589999999999999999999995 7999999999999


Q ss_pred             CC
Q 007323          607 QI  608 (608)
Q Consensus       607 T~  608 (608)
                      |+
T Consensus       130 tp  131 (166)
T PHA02743        130 TA  131 (166)
T ss_pred             CH
Confidence            85

>PHA02859 ankyrin repeat protein; Provisional

Probab=98.63  E-value=6.7e-08  Score=90.07  Aligned_cols=79  Identities=19%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             ccccchh-hhhhhhHhHHHhc---CCHHHHHHHHHcCCCCCCCCCCCchHHhHHHh--cCcHHHHHHHHhcCCCCCCcCC
Q 007323          530 FHISKHE-AELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS--RGYEEIMTFLIQKGVDINLKGN  603 (608)
Q Consensus       530 ~~i~~~~-~~~~~~L~~aa~~---~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~--~~~~~~v~~Ll~~ga~~~~~~~  603 (608)
                      ..++..+ ....+|+|.++..   +..+.++.|+++|++++..|..|.||||.|+.  .++.+++++|+++|++++.+|.
T Consensus        77 advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~  156 (209)
T PHA02859         77 ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDF  156 (209)
T ss_pred             CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccC
Confidence            3444443 3567888887643   36788888888999999888889999988764  4678899999999999998888


Q ss_pred             CCCCC
Q 007323          604 SIMQI  608 (608)
Q Consensus       604 ~g~T~  608 (608)
                      +|.|+
T Consensus       157 ~g~t~  161 (209)
T PHA02859        157 DNNNI  161 (209)
T ss_pred             CCCcH
Confidence            88874

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.61  E-value=3e-08  Score=87.82  Aligned_cols=70  Identities=24%  Similarity=0.292  Sum_probs=36.1

Q ss_pred             hhhhhHhHHHhcCCHH---HHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHh-cCCCCCCcCCCCCC
Q 007323          538 ELALKVNSAAYHGDLY---QLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIMQ  607 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~---~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~T  607 (608)
                      .+.+++|.|+..+..+   .++.|++.|++++..+ ..|+||||+|+..++.+++++|+. .|++++.+|..|+|
T Consensus        54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~t  128 (154)
T PHA02736         54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKT  128 (154)
T ss_pred             CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCC
Confidence            3445555555554432   3445555555555554 245555555555555555555554 25555555555554

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.61  E-value=5.6e-08  Score=60.55  Aligned_cols=33  Identities=48%  Similarity=0.890  Sum_probs=31.2

Q ss_pred             CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC
Q 007323          571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN  603 (608)
Q Consensus       571 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  603 (608)
                      +|.||||+|+..|+.+++++|+++||+++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            589999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PHA02884 ankyrin repeat protein; Provisional

Probab=98.60  E-value=9.1e-08  Score=92.76  Aligned_cols=69  Identities=20%  Similarity=0.255  Sum_probs=61.7

Q ss_pred             hhhHhHHHhcCCHHHHHHHHHcCCCCCCCC----CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCCC
Q 007323          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTD----YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQI  608 (608)
Q Consensus       540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d----~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T~  608 (608)
                      .++++.|+..+..+.++.|+++|++++..+    ..|.||||.|+..++.+++++|+++|||+|.++ ..|.|+
T Consensus        34 ~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~Tp  107 (300)
T PHA02884         34 ANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITP  107 (300)
T ss_pred             CHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCH
Confidence            456777888899999999999999999874    589999999999999999999999999999964 578885

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.58  E-value=3e-08  Score=96.82  Aligned_cols=78  Identities=24%  Similarity=0.316  Sum_probs=70.6

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+.+..+..++++++.||..|+.+++++|++.|+|+|..+..|+|+||.+++.|+.|++++|+.+|+-++ +|..|.|+
T Consensus       141 ad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~-~d~~GmtP  218 (615)
T KOG0508|consen  141 ADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKID-VDGHGMTP  218 (615)
T ss_pred             CCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCceee-ecCCCCch
Confidence            3455566778999999999999999999999999999999999999999999999999999999999987 45558885

>PHA03095 ankyrin-like protein; Provisional

Probab=98.57  E-value=1.4e-07  Score=100.52  Aligned_cols=78  Identities=23%  Similarity=0.151  Sum_probs=67.4

Q ss_pred             cccchhhhhhhhHhHHHhcCCH--HHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDL--YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~--~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+..+..+.+|+|.|+..+..  ..+..++..|+++|..|..|+||||+|+..|+.+++++|+++|||+|.+|.+|+|+
T Consensus       214 ~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad~n~~~~~g~tp  293 (471)
T PHA03095        214 DPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTP  293 (471)
T ss_pred             CCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            3455667778999999988764  57788889999999999999999999999999999999999999999999999885

>PHA02741 hypothetical protein; Provisional

Probab=98.56  E-value=1e-07  Score=85.68  Aligned_cols=76  Identities=26%  Similarity=0.246  Sum_probs=66.3

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHH------cCCCCCCCCCCCchHHhHHHhcCc----HHHHHHHHhcCCCCCCcC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIR------AGADPNRTDYDGRSPLHLAASRGY----EEIMTFLIQKGVDINLKG  602 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~------~ga~~~~~d~~g~tpL~~A~~~~~----~~~v~~Ll~~ga~~~~~~  602 (608)
                      +..+..+.+++|.|+..++.+.++.++.      .|++++..|..|.||||+|+..|+    .+++++|+++|+++|.+|
T Consensus        15 ~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~   94 (169)
T PHA02741         15 AEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQE   94 (169)
T ss_pred             hccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCC
Confidence            3445667899999999999999998753      368899999999999999999998    589999999999999998


Q ss_pred             C-CCCCC
Q 007323          603 N-SIMQI  608 (608)
Q Consensus       603 ~-~g~T~  608 (608)
                      . +|+|+
T Consensus        95 ~~~g~Tp  101 (169)
T PHA02741         95 MLEGDTA  101 (169)
T ss_pred             cCCCCCH
Confidence            5 89985

>PHA03095 ankyrin-like protein; Provisional

Probab=98.56  E-value=1.9e-07  Score=99.34  Aligned_cols=79  Identities=28%  Similarity=0.312  Sum_probs=57.4

Q ss_pred             ccccchhhhhhhhHhHHHhcC-CHHHHHHHHHcCCCCCCCCCCCchHHhHHH--hcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHG-DLYQLEGLIRAGADPNRTDYDGRSPLHLAA--SRGYEEIMTFLIQKGVDINLKGNSIM  606 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~-~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~--~~~~~~~v~~Ll~~ga~~~~~~~~g~  606 (608)
                      ..++..+..+.+|+|+|+..+ ..+.++.|+++|++++..|..|.||||.|+  ..++.+++++|+++|++++.+|..|.
T Consensus        74 adin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~  153 (471)
T PHA03095         74 ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGM  153 (471)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCC
Confidence            344555556777777777777 477777777777777777777777777777  44567777777777777777777777


Q ss_pred             CC
Q 007323          607 QI  608 (608)
Q Consensus       607 T~  608 (608)
                      |+
T Consensus       154 tp  155 (471)
T PHA03095        154 TP  155 (471)
T ss_pred             CH
Confidence            64

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.55  E-value=1.2e-07  Score=98.97  Aligned_cols=77  Identities=23%  Similarity=0.266  Sum_probs=65.5

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ..+..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++||+++..+..|.|
T Consensus       127 d~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~  203 (413)
T PHA02875        127 DPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCV  203 (413)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCc
Confidence            34455566788899999999999999999999999888888999999999999999999999999999988887753

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.55  E-value=1.4e-07  Score=102.28  Aligned_cols=73  Identities=21%  Similarity=0.142  Sum_probs=65.2

Q ss_pred             hhhhhhhHhHHHh--cCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc--HHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          536 EAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY--EEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~--~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~--~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +..+.+|+|.++.  .++.+.+++|+++|++++..|..|.||||.|+..|+  .+++++|+++|||+|.+|..|+|+
T Consensus       174 d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TP  250 (764)
T PHA02716        174 KKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSP  250 (764)
T ss_pred             CCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            4567889998754  357899999999999999999999999999999985  589999999999999999999985

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.55  E-value=1.4e-07  Score=99.09  Aligned_cols=78  Identities=26%  Similarity=0.280  Sum_probs=66.1

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+..+.+|+|.|+..+..+.++.|+++|++++..+..|.||||.|+..|+.+++++|+++|++++.++..|.|+
T Consensus       149 d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~Tp  226 (434)
T PHA02874        149 DVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTP  226 (434)
T ss_pred             CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCH
Confidence            344556667888888888888888899988888888888888899999998889999999998899888888888874

>PHA02798 ankyrin-like protein; Provisional

Probab=98.55  E-value=1.4e-07  Score=100.49  Aligned_cols=76  Identities=29%  Similarity=0.357  Sum_probs=43.6

Q ss_pred             ccchhhhhhhhHhHHHhcC---CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc---HHHHHHHHhcCCCCCCcC-CC
Q 007323          532 ISKHEAELALKVNSAAYHG---DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKGVDINLKG-NS  604 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~---~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~---~~~v~~Ll~~ga~~~~~~-~~  604 (608)
                      ++..+..+.+|+|+|+..+   ..+.++.|+++|++++..|..|.||||.|+..++   .+++++|+++|+|+|..+ ..
T Consensus       102 iN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~  181 (489)
T PHA02798        102 INKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKE  181 (489)
T ss_pred             CCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcC
Confidence            4444455556666665543   4556666666666666666666666666665555   566666666666666553 34


Q ss_pred             CCC
Q 007323          605 IMQ  607 (608)
Q Consensus       605 g~T  607 (608)
                      |.|
T Consensus       182 ~~t  184 (489)
T PHA02798        182 KYD  184 (489)
T ss_pred             CCc
Confidence            444

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.52  E-value=5.9e-08  Score=91.73  Aligned_cols=76  Identities=20%  Similarity=0.344  Sum_probs=59.8

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCC--------------------------------------CCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRT--------------------------------------DYDG  572 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~--------------------------------------d~~g  572 (608)
                      +|-.|..+++.+|+++.+.+.++++.|++.| ++++..                                      ...|
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~g  340 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHG  340 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhc
Confidence            4455666677777777777777777777666 444443                                      2457


Q ss_pred             chHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          573 RSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       573 ~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      .|+|++|+++|+.++|+.|+..|||+|++|.+|.|
T Consensus       341 QTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGST  375 (452)
T KOG0514|consen  341 QTALMLAVSHGRVDMVKALLACGADVNIQDDDGST  375 (452)
T ss_pred             chhhhhhhhcCcHHHHHHHHHccCCCccccCCccH
Confidence            77799999999999999999999999999999988

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=98.51  E-value=2.9e-07  Score=77.93  Aligned_cols=69  Identities=28%  Similarity=0.239  Sum_probs=61.5

Q ss_pred             hhhHhHHHhcCCHHHHHHHHHcCC-CCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          540 ALKVNSAAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       540 ~~~L~~aa~~~~~~~~~~Ll~~ga-~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..-+..|+..+.+..++.+++..+ -+|.+|.+|.||||-|+..|+.++|+.|+..||+++++...|||+
T Consensus        64 ~rl~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTP  133 (228)
T KOG0512|consen   64 IRLLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTP  133 (228)
T ss_pred             HHHHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccc
Confidence            344567888899998988887764 568999999999999999999999999999999999999999996

>PHA02875 ankyrin repeat protein; Provisional

Probab=98.51  E-value=2.3e-07  Score=96.89  Aligned_cols=78  Identities=18%  Similarity=0.211  Sum_probs=66.9

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCC-chHHhHHHhcCcHHHHHHHHhcCCCCCCc---CCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDG-RSPLHLAASRGYEEIMTFLIQKGVDINLK---GNSI  605 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g-~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~---~~~g  605 (608)
                      ...+..+..+.+|+|.|+..++.+.++.|++.|++++..+..| .||+|.|+..|+.+++++|+++|||+|+.   +.+|
T Consensus       159 ~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~~~~~~~~~  238 (413)
T PHA02875        159 ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNIMFMIEGEE  238 (413)
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcchHhhcCCCc
Confidence            3455567778899999999999999999999999999988776 58899999999999999999999999976   3445


Q ss_pred             CC
Q 007323          606 MQ  607 (608)
Q Consensus       606 ~T  607 (608)
                      .|
T Consensus       239 ~t  240 (413)
T PHA02875        239 CT  240 (413)
T ss_pred             hH
Confidence            44

>PHA02946 ankyin-like protein; Provisional

Probab=98.49  E-value=6.4e-07  Score=93.54  Aligned_cols=69  Identities=28%  Similarity=0.333  Sum_probs=61.7

Q ss_pred             hhhHhHHH--hcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          540 ALKVNSAA--YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       540 ~~~L~~aa--~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ...+|.++  .....+.++.|+++|+++|..|..|.||||+|+..|+.+++++|+++|||+|.+|.+|+|+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~Tp  108 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTP  108 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence            44555544  4456789999999999999999999999999999999999999999999999999999985

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.47  E-value=2.9e-07  Score=98.25  Aligned_cols=69  Identities=25%  Similarity=0.261  Sum_probs=61.7

Q ss_pred             hhhHhHHHhcCC--HHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          540 ALKVNSAAYHGD--LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       540 ~~~L~~aa~~~~--~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+++|.|+..+.  .+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|||+|.+|..|.|+
T Consensus       216 ~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tp  286 (480)
T PHA03100        216 ETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTP  286 (480)
T ss_pred             HhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcH
Confidence            678888888888  899999999999999889889999999999999999999999999999999988885

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=98.46  E-value=2.2e-07  Score=69.93  Aligned_cols=66  Identities=29%  Similarity=0.420  Sum_probs=60.1

Q ss_pred             hHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       542 ~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+.++..+|..+.++.....|.++|..- .|++|||+|+-.|+.++.++|+..||+++.+|+.|-|+
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITP   70 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITP   70 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHccccHHHHh-CCcccchHhhhcchHHHHHHHHHhccccCCccccCCcH
Confidence            4567788999999999999998887655 89999999999999999999999999999999999885

>PHA02730 ankyrin-like protein; Provisional

Probab=98.46  E-value=2.7e-07  Score=98.05  Aligned_cols=74  Identities=16%  Similarity=0.153  Sum_probs=63.8

Q ss_pred             chhhhhhhhHhHHHhcC---CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC--cHHHHHHHHhcCC--CCCCcCCCCC
Q 007323          534 KHEAELALKVNSAAYHG---DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGV--DINLKGNSIM  606 (608)
Q Consensus       534 ~~~~~~~~~L~~aa~~~---~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~--~~~~v~~Ll~~ga--~~~~~~~~g~  606 (608)
                      ..+..+.++||+|+..+   +.++++.|+++||+++..|..|+||||+|+..+  +.+++++|+++|+  ++++.+..|+
T Consensus        36 ~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d  115 (672)
T PHA02730         36 HIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNIND  115 (672)
T ss_pred             hcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCC
Confidence            45566889999999887   489999999999999999999999999999866  7999999999965  5587776665


Q ss_pred             C
Q 007323          607 Q  607 (608)
Q Consensus       607 T  607 (608)
                      +
T Consensus       116 ~  116 (672)
T PHA02730        116 F  116 (672)
T ss_pred             c
Confidence            4

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.45  E-value=1.5e-05  Score=84.61  Aligned_cols=92  Identities=20%  Similarity=0.350  Sum_probs=57.7

Q ss_pred             CcccccceEECCCChhHHH---------HHHHHHHHHHHHHHHhchhee-eccCC-CcCeehHH-HHHHHHHHHHHHhhc
Q 007323           57 FRHFSRNLVFHPDNRWYRA---------WTKFILIWAVYSSIFTPVEFG-FFRGL-SKNLYVLD-IVGQIAFLFDIVLQF  124 (608)
Q Consensus        57 ~~~~~~~~~~~P~s~~~~~---------w~~~~~~~~~~~~~~~p~~~~-f~~~~-~~~~~~~~-~~~~~~f~~d~~~~f  124 (608)
                      .|..+..+++.|.++|+..         ++.+++++++.+++.+...-. ..... +..+..++ +++-+||++|+.++.
T Consensus      1098 ~r~~Ws~ylF~pQ~rFR~lc~~ii~hk~Fd~vVl~~IfLNcVtialerp~i~~~s~EriFltlsnyIFtaIfV~Em~lKV 1177 (1956)
T KOG2302|consen 1098 LRELWSKYLFSPQNRFRVLCQNIIQHKAFDTVVLFFIFLNCVTIALERPAIVEGSTERIFLTLSNYIFTAIFVVEMTLKV 1177 (1956)
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHhhhhheehhhhhhhhHHHHhcccccccCcceEEEEEecchHHHHHHHHHHHHHH
Confidence            3666778899999998854         444555566666666655321 11111 12234454 899999999999885


Q ss_pred             e-eeEEeCCCcEEeeccHHHHHHHhhc-cchhHhhhhc
Q 007323          125 C-LAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCM  160 (608)
Q Consensus       125 ~-t~~~~~~~~~~i~~~~~i~~~yl~~-~f~iDl~s~l  160 (608)
                      . .|.+-.+            ..|+++ |-.+|.+-++
T Consensus      1178 VALGl~fge------------~aYl~ssWN~LDgflv~ 1203 (1956)
T KOG2302|consen 1178 VALGLYFGE------------QAYLRSSWNVLDGFLVA 1203 (1956)
T ss_pred             Hhhhhccch------------HHHHHHHHHhhhHHHHH
Confidence            3 3333222            789998 6688875443

>PHA02878 ankyrin repeat protein; Provisional

Probab=98.45  E-value=3.1e-07  Score=97.66  Aligned_cols=78  Identities=21%  Similarity=0.191  Sum_probs=69.4

Q ss_pred             cccccchhhhhhhhHhHHHhc-CCHHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323          529 TFHISKHEAELALKVNSAAYH-GDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM  606 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~aa~~-~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  606 (608)
                      ...++..+..+.+|+|+|+.. +..+.++.|+++|++++..+. .|.||||.|  .++.+++++|+++|||+|+.|..|.
T Consensus       224 ga~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~  301 (477)
T PHA02878        224 GASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKL  301 (477)
T ss_pred             CCCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCC
Confidence            345666778889999999975 689999999999999999886 799999999  5678999999999999999999999


Q ss_pred             CC
Q 007323          607 QI  608 (608)
Q Consensus       607 T~  608 (608)
                      |+
T Consensus       302 Tp  303 (477)
T PHA02878        302 TP  303 (477)
T ss_pred             CH
Confidence            96

>PHA02874 ankyrin repeat protein; Provisional

Probab=98.44  E-value=3.6e-07  Score=95.96  Aligned_cols=75  Identities=21%  Similarity=0.171  Sum_probs=54.6

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+..+.+|+|.|+..+..+.+++|++.|++++..+..|.||||.|+..++ +.+++|+ .|+++|.+|.+|+|+
T Consensus       183 ~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~in~~d~~G~Tp  257 (434)
T PHA02874        183 ANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNASINDQDIDGSTP  257 (434)
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCCCCCcCCCCCCH
Confidence            34445566778888888888888888888888877777778888888877654 4555555 577888888888774

>PHA02795 ankyrin-like protein; Provisional

Probab=98.43  E-value=2.9e-07  Score=93.13  Aligned_cols=74  Identities=23%  Similarity=0.290  Sum_probs=66.7

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC--------cHHHHHHHHhcCCCCCCcC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG--------YEEIMTFLIQKGVDINLKG  602 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~--------~~~~v~~Ll~~ga~~~~~~  602 (608)
                      .++..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|        +.+++++|+++|++++..+
T Consensus       213 DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~  292 (437)
T PHA02795        213 DINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIK  292 (437)
T ss_pred             CcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchh
Confidence            45666778899999999999999999999999999999999999999999988        4699999999999998765


Q ss_pred             CC
Q 007323          603 NS  604 (608)
Q Consensus       603 ~~  604 (608)
                      ..
T Consensus       293 ~~  294 (437)
T PHA02795        293 LA  294 (437)
T ss_pred             HH
Confidence            43

>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism]

Probab=98.41  E-value=3.8e-07  Score=90.48  Aligned_cols=170  Identities=18%  Similarity=0.315  Sum_probs=95.1

Q ss_pred             eehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccchhHhhhhccHHHHHhhcCchhHHHHHHHHHHH
Q 007323          105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLY  184 (608)
Q Consensus       105 ~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~  184 (608)
                      +|++..++..+-+.--++-|..+|...-           .+-.+.-.|+++++..+||.+-.....    +.+|.++..+
T Consensus        92 iw~lq~~~a~is~~~ti~~~yl~ysgsv-----------vrllinihfllelitsfpfii~ifips----ltylyvpvfl  156 (1087)
T KOG3193|consen   92 IWFLQTMFACISMVYTILVFYLSYSGSV-----------VRLLINIHFLLELITSFPFIISIFIPS----LTYLYVPVFL  156 (1087)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhccccch-----------hhhhhhHHHHHHHhhcccceeeeeccc----cceeechhhh
Confidence            3556666666666677777788876322           122333367899999999876543332    4455555555


Q ss_pred             HHHHHHHHHHHHHHHhh----h--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCccccc
Q 007323          185 RVRKVSQFFHKMEKDIR----I--NYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFR  258 (608)
Q Consensus       185 r~~r~~~~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~  258 (608)
                      ..+-....+..+.+++.    .  +..+.++..       +....+|+.|.-.+...                    ++.
T Consensus       157 ncwlakgalqammndl~r~~~~s~sal~~ql~l-------l~s~l~clift~~c~i~--------------------h~q  209 (1087)
T KOG3193|consen  157 NCWLAKGALQAMMNDLNRKSFISSSALFRQLLL-------LFSVLACLIFTGMCSIE--------------------HLQ  209 (1087)
T ss_pred             hhhhhhhHHHHhhhhHhHHhhhhHHHHHHHHHH-------HHHHHHHHHHhhhhhHH--------------------HHH
Confidence            55433333322222211    1  112222222       23334555543221100                    000


Q ss_pred             cc-chHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          259 EI-GFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA  316 (608)
Q Consensus       259 ~~-~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~  316 (608)
                      .. .--.....|+||+++|.+||||||..|.-|...+..++++.+..++..--+-.++.
T Consensus       210 ra~~k~i~lf~s~y~v~vtfstvgygd~~pd~w~sql~~vi~icval~~ip~q~~~l~~  268 (1087)
T KOG3193|consen  210 RARGKRIDLFTSFYFVMVTFSTVGYGDWYPDYWASQLCVVILICVALGLIPKQLDELGQ  268 (1087)
T ss_pred             HccCceeeeeeeEEEEEEEEeeccccccccccchhhHHHHHHHHHHHhccHHHHHHHHH
Confidence            00 00012347899999999999999999999999988877766666665555555544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.41  E-value=2.6e-07  Score=65.59  Aligned_cols=50  Identities=32%  Similarity=0.430  Sum_probs=32.6

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHH
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLA  579 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A  579 (608)
                      ...+..+..+.+|+|.|+..++.+.++.|++.|++++.+|..|+||+|+|
T Consensus         7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            45677788889999999999999999999999999999999999999987

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=98.41  E-value=4e-07  Score=98.67  Aligned_cols=79  Identities=18%  Similarity=0.089  Sum_probs=68.9

Q ss_pred             ccccchhhhhhhhHhHHHh--cCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHh--------------cCcHHHHHHHHh
Q 007323          530 FHISKHEAELALKVNSAAY--HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAAS--------------RGYEEIMTFLIQ  593 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~--~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~--------------~~~~~~v~~Ll~  593 (608)
                      ..++..+..+.+|+|.|+.  .+..+.++.|+++|++++..|..|+||||.|+.              .++.+++++|++
T Consensus       308 AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~  387 (764)
T PHA02716        308 VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS  387 (764)
T ss_pred             CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHH
Confidence            3455667788999998764  457899999999999999999999999999865              368899999999


Q ss_pred             cCCCCCCcCCCCCCC
Q 007323          594 KGVDINLKGNSIMQI  608 (608)
Q Consensus       594 ~ga~~~~~~~~g~T~  608 (608)
                      +|||++.+|..|+|+
T Consensus       388 ~GADIn~kn~~G~TP  402 (764)
T PHA02716        388 LGADITAVNCLGYTP  402 (764)
T ss_pred             CCCCCCCcCCCCCCh
Confidence            999999999999995

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.40  E-value=3.9e-07  Score=95.12  Aligned_cols=77  Identities=27%  Similarity=0.292  Sum_probs=71.2

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCC---CCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPN---RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~---~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      .++..|..+.+|+|.|+..|+..+++.|+..|+..+   ..|.+|.||||.|+..|+..+|+.|+.+||++..+|..|.|
T Consensus       333 llne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~S  412 (929)
T KOG0510|consen  333 LLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKS  412 (929)
T ss_pred             ccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeeccccccc
Confidence            456778889999999999999999999999999887   46999999999999999999999999999999999998876

>PHA02792 ankyrin-like protein; Provisional

Probab=98.40  E-value=5.8e-07  Score=94.52  Aligned_cols=70  Identities=20%  Similarity=0.124  Sum_probs=62.3

Q ss_pred             hhhhHhHHHhcCCHH---HHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          539 LALKVNSAAYHGDLY---QLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~---~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+|+|.|+.....+   .++.++.+|+++|..|..|.||||.|+..++.+++++|+++||++|.+|..|.|+
T Consensus       374 ~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~Tp  446 (631)
T PHA02792        374 NIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTC  446 (631)
T ss_pred             ChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            468888876665543   4788899999999999999999999999999999999999999999999999984

>PHA02736 Viral ankyrin protein; Provisional

Probab=98.37  E-value=8.6e-07  Score=78.47  Aligned_cols=70  Identities=20%  Similarity=0.243  Sum_probs=62.6

Q ss_pred             cccchh-hhhhhhHhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323          531 HISKHE-AELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL  600 (608)
Q Consensus       531 ~i~~~~-~~~~~~L~~aa~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  600 (608)
                      .++..+ ..+.+|+|+|+..+..+.++.|+. .|++++..|..|.||||+|+..|+.+++++|+.+||+.++
T Consensus        83 din~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~~  154 (154)
T PHA02736         83 DINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCKV  154 (154)
T ss_pred             CccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            344454 468899999999999999999997 5999999999999999999999999999999999999863

>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=98.36  E-value=2.4e-06  Score=84.22  Aligned_cols=99  Identities=19%  Similarity=0.290  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCCC---CCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCC--
Q 007323          210 VKLIAVELYCSHIAACIFYYLATTLPPEQ---EGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGD--  284 (608)
Q Consensus       210 ~~l~~~~~~~~h~~ac~~~~~~~~~~~~~---~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygd--  284 (608)
                      +.+++..++...+||++||.++....+-.   ....|-+..             .....+..||+|++.|+||+|||.  
T Consensus        39 ~~f~~~y~~~~~~Fa~~y~~i~~~~gdl~~~~~~~~~~~Cv-------------~~~~~f~~aF~FSveT~tTIGYG~~~  105 (336)
T PF01007_consen   39 LLFVLSYLLSWLFFALLYYLIAYSHGDLEPIHADSNWTPCV-------------SNVNSFTSAFLFSVETQTTIGYGSRY  105 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTSCCTTTSBTTS-TSE-------------CT-TTHHHHHHHHHHHHTT---SSSE
T ss_pred             ehhHHHHHHHHHHHHHHHHHHhhhcccchhcccccCCCCce-------------ecccchhhheeEEEEEEEEeccCCcc
Confidence            33445566667778999999875422111   111111110             123467899999999999999998  


Q ss_pred             cccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007323          285 VHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (608)
Q Consensus       285 i~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~  321 (608)
                      ++|......+++++-+++|+++.|+++|.+.+-+++.
T Consensus       106 ~~~~c~~a~~l~~~q~~~g~l~~a~~~Glvfar~srP  142 (336)
T PF01007_consen  106 PTPECPYAIFLVTIQSLVGLLLDAFMTGLVFARFSRP  142 (336)
T ss_dssp             B-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             cCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            6788888889999999999999999999999988873

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. Inwardly-rectifying potassium channels (Kir) are the principal class of two-TM domain potassium channels. They are characterised by the property of inward-rectification, which is described as the ability to allow large inward currents and smaller outward currents. Inwardly rectifying potassium channels (Kir) are responsible for regulating diverse processes including: cellular excitability, vascular tone, heart rate, renal salt flow, and insulin release []. To date, around twenty members of this superfamily have been cloned, which can be grouped into six families by sequence similarity, and these are designated Kir1.x-6.x [, ]. Cloned Kir channel cDNAs encode proteins of between ~370-500 residues, both N- and C-termini are thought to be cytoplasmic, and the N terminus lacks a signal sequence. Kir channel alpha subunits possess only 2TM domains linked with a P-domain. Thus, Kir channels share similarity with the fifth and sixth domains, and P-domain of the other families. It is thought that four Kir subunits assemble to form a tetrameric channel complex, which may be hetero- or homomeric [].; PDB: 3AT9_A 3AUW_D 3SYA_A 3ATE_A 3SYQ_A 3SYO_A 3ATB_A 3SYC_A 3AT8_A 3ATA_A ....

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=98.35  E-value=7.5e-07  Score=88.15  Aligned_cols=66  Identities=29%  Similarity=0.411  Sum_probs=62.3

Q ss_pred             HhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       543 L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      |.-|+..|.+++++..+..-.|+...++.|.||||-|...||.+||++|+..|||+|+.|.+|||+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTP  619 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTP  619 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCch
Confidence            345788999999999999999999999999999999999999999999999999999999999995

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.34  E-value=1e-06  Score=96.57  Aligned_cols=76  Identities=24%  Similarity=0.382  Sum_probs=44.3

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhc-------CCCCCCcCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-------GVDINLKGNS  604 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-------ga~~~~~~~~  604 (608)
                      ++..+..+.+++|+|+..++.++++.|++.|++++..|..|.||||+|+..|+.+++++|+.+       |++++..+..
T Consensus       108 in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~  187 (664)
T PTZ00322        108 PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQCHFELGANAKPDSFT  187 (664)
T ss_pred             CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCcccccCCCCCccccC
Confidence            334444555666666666666666666666666666666666666666666666666666555       5555555555


Q ss_pred             CCC
Q 007323          605 IMQ  607 (608)
Q Consensus       605 g~T  607 (608)
                      |.+
T Consensus       188 g~~  190 (664)
T PTZ00322        188 GKP  190 (664)
T ss_pred             CCC
Confidence            544

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=98.32  E-value=5.6e-07  Score=79.24  Aligned_cols=71  Identities=23%  Similarity=0.224  Sum_probs=66.0

Q ss_pred             hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....++..|+..+..+++++|+.++.|+|..|..|.|||-+|+.-+|.+||+.|+..|||++..+..|.++
T Consensus       192 ~resALsLAt~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~  262 (296)
T KOG0502|consen  192 YRESALSLATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWI  262 (296)
T ss_pred             hhhhhHhHHhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcH
Confidence            34456788999999999999999999999999999999999999999999999999999999999999874

>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels

Probab=98.32  E-value=5.7e-07  Score=66.76  Aligned_cols=42  Identities=26%  Similarity=0.517  Sum_probs=38.0

Q ss_pred             cccceEECCCChhHHHHHHHHHHHHHHHHHHhchheeeccCC
Q 007323           60 FSRNLVFHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFFRGL  101 (608)
Q Consensus        60 ~~~~~~~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~  101 (608)
                      ..+.++|||.|.++.+||++++++++++++++|+.++|..+.
T Consensus        33 ~~~~~IIHP~S~fR~~WD~~m~~~~~~~~~~iP~~isF~~d~   74 (77)
T PF08412_consen   33 SSGPWIIHPFSKFRFYWDLIMLILLLYNLIIIPFRISFFSDE   74 (77)
T ss_pred             cCCCeEEcCCccHHHHHHHHHHHHHHHHHHHHhhhheEecCc
Confidence            346789999999999999999999999999999999997553

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.31  E-value=6.2e-07  Score=89.59  Aligned_cols=72  Identities=33%  Similarity=0.391  Sum_probs=68.5

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+.+.+|.|+..|..++++.|+.+|.+++..|.+||||||.|+..|+.+.+++|+.+|++.+..+..|.|+
T Consensus       196 ~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p  267 (527)
T KOG0505|consen  196 ARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETP  267 (527)
T ss_pred             cccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCC
Confidence            347899999999999999999999999999999999999999999999999999999999999999999875

>PHA02798 ankyrin-like protein; Provisional

Probab=98.31  E-value=9.5e-07  Score=94.16  Aligned_cols=76  Identities=14%  Similarity=0.169  Sum_probs=41.9

Q ss_pred             ccchhhhhhhhHhHHHhcCC---HHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCc----HHHHHHHHhcCCCCCCcCC
Q 007323          532 ISKHEAELALKVNSAAYHGD---LYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGY----EEIMTFLIQKGVDINLKGN  603 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~---~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~----~~~v~~Ll~~ga~~~~~~~  603 (608)
                      ++..+..+.+|+|.++..+.   .++++.|+++|++++..+ ..|.||||.+...+.    .+++++|+++|++++..+.
T Consensus       138 vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~  217 (489)
T PHA02798        138 TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENK  217 (489)
T ss_pred             ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCc
Confidence            34444555566666655554   566666666666665553 345566665554432    3556666666666665555


Q ss_pred             CCCC
Q 007323          604 SIMQ  607 (608)
Q Consensus       604 ~g~T  607 (608)
                      .|.|
T Consensus       218 ~~~~  221 (489)
T PHA02798        218 SHKK  221 (489)
T ss_pred             cccc
Confidence            5543

>PHA03100 ankyrin repeat protein; Provisional

Probab=98.30  E-value=1e-06  Score=94.13  Aligned_cols=76  Identities=26%  Similarity=0.403  Sum_probs=60.8

Q ss_pred             cccchhhhhhhhHhHHHhcC--CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHG--DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM  606 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~--~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  606 (608)
                      ..+..+..+.+++|.|+..+  ..+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++..+..|.
T Consensus       133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~  210 (480)
T PHA03100        133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETL  210 (480)
T ss_pred             CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCC
Confidence            34455566778888888888  78888888888888888888888888888888888888888888888888877774

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.25  E-value=2.1e-06  Score=90.21  Aligned_cols=73  Identities=29%  Similarity=0.322  Sum_probs=64.0

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCC---------C--------------CCCchHHhHHHhcCcHHHHHHHH
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRT---------D--------------YDGRSPLHLAASRGYEEIMTFLI  592 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~---------d--------------~~g~tpL~~A~~~~~~~~v~~Ll  592 (608)
                      +-.+.++||.|..+.+.+.++.|++.|||++++         |              +.|..||..|+..++.+++++|+
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl  260 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLL  260 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHH
Confidence            355678999999999999999999999999764         1              23678999999999999999999


Q ss_pred             hcCCCCCCcCCCCCCC
Q 007323          593 QKGVDINLKGNSIMQI  608 (608)
Q Consensus       593 ~~ga~~~~~~~~g~T~  608 (608)
                      ++|||+|++|..|+||
T Consensus       261 ~~gAd~~aqDS~GNTV  276 (782)
T KOG3676|consen  261 AHGADPNAQDSNGNTV  276 (782)
T ss_pred             hcCCCCCccccCCChH
Confidence            9999999999999986

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.23  E-value=1.2e-06  Score=87.64  Aligned_cols=77  Identities=27%  Similarity=0.359  Sum_probs=71.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+.+..+++|-++...+.+++++++++|+++|..|..||||||.|+..||..++++|+.+||++-+.|.+|..|
T Consensus        66 ~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P  142 (527)
T KOG0505|consen   66 PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMP  142 (527)
T ss_pred             ccccCCccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCc
Confidence            35667788999999999999999999999999999999999999999999999999999999999998888877653

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=98.23  E-value=1.7e-06  Score=79.36  Aligned_cols=76  Identities=25%  Similarity=0.343  Sum_probs=68.7

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCC-CCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRT-DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~-d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      .+..|..+..++..|+..|+++.++.+++.|+|+|.. +..+.||||.|+..|+.+++++|++.||.+...|.=|+|
T Consensus        38 vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNsvgrT  114 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNSVGRT  114 (396)
T ss_pred             hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccchhhh
Confidence            4556777888999999999999999999999999864 566899999999999999999999999999999988877

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.22  E-value=2.1e-06  Score=91.64  Aligned_cols=71  Identities=17%  Similarity=0.183  Sum_probs=33.3

Q ss_pred             hhhhhhHhHHHhc--CCHHHHHHHHHcCCCCCC-CCCCCchHHhHHHhcC----cHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          537 AELALKVNSAAYH--GDLYQLEGLIRAGADPNR-TDYDGRSPLHLAASRG----YEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       537 ~~~~~~L~~aa~~--~~~~~~~~Ll~~ga~~~~-~d~~g~tpL~~A~~~~----~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ..+.+|+|.++..  ++.+.++.|+++|++++. .+..|.||||.|+..+    +.+++++|+++||++|.+|..|.|
T Consensus       143 ~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t  220 (494)
T PHA02989        143 SRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSES  220 (494)
T ss_pred             CCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCcccc
Confidence            3444455544322  344555555555555544 3444555555444332    445555555555555555444433

>PHA02917 ankyrin-like protein; Provisional

Probab=98.22  E-value=2.1e-06  Score=93.45  Aligned_cols=58  Identities=22%  Similarity=0.290  Sum_probs=52.7

Q ss_pred             CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          551 DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       551 ~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+.++.++.+|+++|.+|..|.||||.|+..++.+++++|+++|||+|++|..|+|+
T Consensus       431 ~~~~v~~Ll~~GAdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~  488 (661)
T PHA02917        431 ILSTINICLPYLKDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTC  488 (661)
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence            3567789999999999999999999999999999999999999999999999999884

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.22  E-value=2.8e-06  Score=94.57  Aligned_cols=72  Identities=26%  Similarity=0.410  Sum_probs=63.2

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+...+++.+...++.+.+++|++.|++++..|..|+||||.|+..|+.++|++|+++||+++..+.+|.|+
T Consensus       143 ~~~~~~l~~~i~~~~~~i~k~Ll~~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~~~~~g~t~  214 (682)
T PHA02876        143 IEYMKLIKERIQQDELLIAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSV  214 (682)
T ss_pred             hhhhHHHHHHHHCCcHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCccCCCCCCH
Confidence            334566778888899999999999999999999999999999999999999999999999999998888874

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.20  E-value=2.8e-06  Score=93.11  Aligned_cols=69  Identities=33%  Similarity=0.522  Sum_probs=65.6

Q ss_pred             hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ...++.++..|+.+.++.|+..|+++|..|..|+||||+|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus        83 ~~~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~Tp  151 (664)
T PTZ00322         83 TVELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTP  151 (664)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            456888999999999999999999999999999999999999999999999999999999999999985

>PHA02989 ankyrin repeat protein; Provisional

Probab=98.19  E-value=3.9e-06  Score=89.62  Aligned_cols=79  Identities=14%  Similarity=0.134  Sum_probs=61.8

Q ss_pred             ccccchhhhhhhhHhHHHhc---CCHHHHHHHHHcCCCC-CCCCCCCchHHhHHHhc--CcHHHHHHHHhcCCCCCC-cC
Q 007323          530 FHISKHEAELALKVNSAAYH---GDLYQLEGLIRAGADP-NRTDYDGRSPLHLAASR--GYEEIMTFLIQKGVDINL-KG  602 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~---~~~~~~~~Ll~~ga~~-~~~d~~g~tpL~~A~~~--~~~~~v~~Ll~~ga~~~~-~~  602 (608)
                      .+++..+..+.+|++.|+..   +..+.++.|+++|+++ +..|..|.||||.|+..  ++.+++++|+++|||++. .+
T Consensus        99 adin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~  178 (494)
T PHA02989         99 ADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTS  178 (494)
T ss_pred             CCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccc
Confidence            34555666678888876544   5788889999999998 78888899999987653  578899999999999888 57


Q ss_pred             CCCCCC
Q 007323          603 NSIMQI  608 (608)
Q Consensus       603 ~~g~T~  608 (608)
                      ..|.|+
T Consensus       179 ~~g~tp  184 (494)
T PHA02989        179 LYGLTP  184 (494)
T ss_pred             ccCCCh
Confidence            788775

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.18  E-value=4.2e-06  Score=82.35  Aligned_cols=74  Identities=27%  Similarity=0.308  Sum_probs=67.7

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ...++...||..+..++++.+-.|+..|+++|-.+ ..|.||||+|+..|+..-+++|+-.|||+++.|.+|+|+
T Consensus       129 ~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP  203 (669)
T KOG0818|consen  129 TAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTP  203 (669)
T ss_pred             hHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcH
Confidence            34556678999999999999999999999999887 459999999999999999999999999999999999985

>PHA02876 ankyrin repeat protein; Provisional

Probab=98.17  E-value=2.7e-06  Score=94.69  Aligned_cols=77  Identities=21%  Similarity=0.308  Sum_probs=64.0

Q ss_pred             ccchhhhhhhhHhHHHhcCC-HHHHHHHHHcCCCCCCCCCCCchHHhHHHhcC-cHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGD-LYQLEGLIRAGADPNRTDYDGRSPLHLAASRG-YEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~-~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~-~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+....+++|.|+..+. ...++.|++.|+++|..|..|+||||.|+..+ +.+++++|+++|||+|.+|..|.|+
T Consensus       401 ~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tp  479 (682)
T PHA02876        401 IEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYP  479 (682)
T ss_pred             ccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            34445556688888876555 45678889999999999999999999999876 6799999999999999999999885

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.13  E-value=2.2e-06  Score=88.90  Aligned_cols=74  Identities=27%  Similarity=0.400  Sum_probs=69.4

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+..|+|+|+.+|+.+.+++++.++..+|.....|.||||.|+++||.+++.+|+.+|+|+-++|+++.|+
T Consensus        78 ~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~  151 (854)
T KOG0507|consen   78 CDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETV  151 (854)
T ss_pred             hhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccH
Confidence            33677889999999999999999999999999999999999999999999999999999999999999998874

>PHA02730 ankyrin-like protein; Provisional

Probab=98.13  E-value=4.1e-06  Score=89.21  Aligned_cols=56  Identities=16%  Similarity=0.133  Sum_probs=48.1

Q ss_pred             HHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC-CCCCC
Q 007323          553 YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN-SIMQI  608 (608)
Q Consensus       553 ~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~T~  608 (608)
                      ++++.|+.+|+++|..|..|.||||+|+..++.+++++|+++||++|++|. .|.|+
T Consensus       443 ~ivk~LIs~GADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~Ta  499 (672)
T PHA02730        443 DVFDILSKYMDDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTA  499 (672)
T ss_pred             HHHHHHHhcccchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCH
Confidence            568888999999999999999999999988889999999999999998886 47763

>PHA02917 ankyrin-like protein; Provisional

Probab=98.12  E-value=4e-06  Score=91.36  Aligned_cols=80  Identities=16%  Similarity=0.112  Sum_probs=65.9

Q ss_pred             cccccchhhhhhhhHhHH--HhcCCHHHHHHHHHcCCCCCCCCC---CC-----------chHHhHHHh-----------
Q 007323          529 TFHISKHEAELALKVNSA--AYHGDLYQLEGLIRAGADPNRTDY---DG-----------RSPLHLAAS-----------  581 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~a--a~~~~~~~~~~Ll~~ga~~~~~d~---~g-----------~tpL~~A~~-----------  581 (608)
                      ...++..+..+.+|++.+  +..++.+++++|+++|++++..|.   .|           .||||.|+.           
T Consensus       126 Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~  205 (661)
T PHA02917        126 GFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRA  205 (661)
T ss_pred             CCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccccccccHHHHHHhhcccccccccc
Confidence            445566677788999854  456899999999999999986543   34           599999975           


Q ss_pred             cCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          582 RGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       582 ~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++.+++++|+++|||+|.+|.+|+|+
T Consensus       206 ~~~~eiv~~Li~~Gadvn~~d~~G~Tp  232 (661)
T PHA02917        206 YVRPEVVKCLINHGIKPSSIDKNYCTA  232 (661)
T ss_pred             cCcHHHHHHHHHCCCCcccCCCCCCcH
Confidence            468999999999999999999999985

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.11  E-value=2.3e-06  Score=60.36  Aligned_cols=37  Identities=41%  Similarity=0.623  Sum_probs=30.8

Q ss_pred             CchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          572 GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       572 g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      |+||+|.|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~   37 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTP   37 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--H
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            7899999999999999999999999999999999984

...

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=98.08  E-value=3.9e-06  Score=93.33  Aligned_cols=76  Identities=22%  Similarity=0.289  Sum_probs=70.7

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +.......+++|.++..+....++.++.+|++++.++..|.||||.|+..|+.++|++|+++|||++++++.|+|+
T Consensus       501 ~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TP  576 (1143)
T KOG4177|consen  501 NLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTP  576 (1143)
T ss_pred             CccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCCh
Confidence            3344566788999999999999999999999999999999999999999999999999999999999999999996

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=98.08  E-value=7.7e-06  Score=77.50  Aligned_cols=79  Identities=29%  Similarity=0.405  Sum_probs=71.4

Q ss_pred             ccccchhhhhhhhHhHHHhcCC-----HHHHHHHHHcCC---CCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCc
Q 007323          530 FHISKHEAELALKVNSAAYHGD-----LYQLEGLIRAGA---DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK  601 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~-----~~~~~~Ll~~ga---~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  601 (608)
                      ...+..+..+.+++|.++..++     .++++.+++.|+   ..+..|..|.||||+|+..|+.+++++|++.|++++.+
T Consensus        97 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~  176 (235)
T COG0666          97 ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSR  176 (235)
T ss_pred             CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHhcCCCCccc
Confidence            3446677888999999999999     999999999999   55666999999999999999999999999999999999


Q ss_pred             CCCCCCC
Q 007323          602 GNSIMQI  608 (608)
Q Consensus       602 ~~~g~T~  608 (608)
                      +..|.|.
T Consensus       177 ~~~g~t~  183 (235)
T COG0666         177 NSYGVTA  183 (235)
T ss_pred             ccCCCcc
Confidence            9999874

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.07  E-value=9e-06  Score=85.29  Aligned_cols=79  Identities=24%  Similarity=0.327  Sum_probs=45.8

Q ss_pred             cccccchhhhhhhhHhHHHhcCCHHHHHHHHH-cC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCC---CcCC
Q 007323          529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIR-AG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN---LKGN  603 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~-~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~---~~~~  603 (608)
                      ...++....+..+|+|.||..|+...++.|++ .| ...|..|..|.||||.|+..||-.++++|+.+||+.+   ..|.
T Consensus       296 Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~  375 (929)
T KOG0510|consen  296 GASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALFLNMSEADS  375 (929)
T ss_pred             CCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhhhccccccc
Confidence            33444444555566666666666666666665 33 3445556666666666666666666666666666655   3355


Q ss_pred             CCCC
Q 007323          604 SIMQ  607 (608)
Q Consensus       604 ~g~T  607 (608)
                      +|.|
T Consensus       376 dg~T  379 (929)
T KOG0510|consen  376 DGNT  379 (929)
T ss_pred             CCch
Confidence            6655

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.05  E-value=3.2e-06  Score=95.04  Aligned_cols=72  Identities=24%  Similarity=0.238  Sum_probs=66.1

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC--------------CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG  602 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d--------------~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  602 (608)
                      ..+.+|+|.|+..++.+.++.|+++|++++..+              ..|.||||.|+..|+.+++++|+++|||+|.+|
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin~~d  205 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADILTAD  205 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchhhHh
Confidence            457899999999999999999999999998653              358999999999999999999999999999999


Q ss_pred             CCCCCC
Q 007323          603 NSIMQI  608 (608)
Q Consensus       603 ~~g~T~  608 (608)
                      ..|+|+
T Consensus       206 ~~g~T~  211 (743)
T TIGR00870       206 SLGNTL  211 (743)
T ss_pred             hhhhHH
Confidence            999984

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=97.96  E-value=2.4e-05  Score=66.02  Aligned_cols=76  Identities=30%  Similarity=0.467  Sum_probs=66.7

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ...+..+.++++.++..+..+.++.++..|++++..+..|.||+|.|+..++.+++++|+++|.+++..|..|.|+
T Consensus        34 ~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~  109 (126)
T cd00204          34 NAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTP  109 (126)
T ss_pred             CccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCH
Confidence            4555667789999999999999999999998888888889999999999999999999999999999888888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only]

Probab=97.94  E-value=3.4e-05  Score=81.77  Aligned_cols=108  Identities=20%  Similarity=0.309  Sum_probs=92.3

Q ss_pred             HHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch-hh---hcCCC---cccEEE
Q 007323          406 IVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV-SI---LCNIP---QPYTVQ  478 (608)
Q Consensus       406 l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~-~~---~~~~~---~~~~~~  478 (608)
                      ++.+++...+..|++|++.|++.+.+|.+.+|.+.+.....+|++..+..+.+|+.|-.. ++   +.+.|   +...++
T Consensus       111 L~rh~~t~~l~~Gd~i~~~~~~dd~i~vv~sg~l~v~~~~~~g~~~llk~V~~G~~~tSllSiLd~l~~~ps~~~~i~ak  190 (1158)
T KOG2968|consen  111 LDRHIETLSLDAGDYIFKPGESDDSIYVVISGELTVHIRNGDGKEYLLKTVPPGGSFTSLLSILDSLPGFPSLSRTIAAK  190 (1158)
T ss_pred             echhhhhhcccCCceeccCCCCCceEEEEeccceEEEecCCCCceeeEeeccCCCchHhHHHHHHhccCCCcccceeeee
Confidence            336778889999999999999999999999999999999999999999999999755443 33   33444   357899


Q ss_pred             EeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          479 VCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       479 a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      |.++|.+..+|.+.|.+....+|+-..++++..+-
T Consensus       191 A~t~~tv~~~p~~sF~~~~~k~P~s~iriiQvvmT  225 (1158)
T KOG2968|consen  191 AATDCTVARIPYTSFRESFHKNPESSIRIIQVVMT  225 (1158)
T ss_pred             eecCceEEEeccchhhhhhccChHHHHHHHHHHHH
Confidence            99999999999999999999999998888776654

>PHA02792 ankyrin-like protein; Provisional

Probab=97.90  E-value=5.8e-05  Score=79.78  Aligned_cols=67  Identities=19%  Similarity=0.027  Sum_probs=58.4

Q ss_pred             hHhHHHhcCCHHHHHHHHHcCCCCCCCCCCC--chHHhHHHhcCcH---HHHHHHHhcCCCCCCcCCCCCCC
Q 007323          542 KVNSAAYHGDLYQLEGLIRAGADPNRTDYDG--RSPLHLAASRGYE---EIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       542 ~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g--~tpL~~A~~~~~~---~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++.|+..++.+.++.|+++|++++..|..|  .||||.|+..+..   +++++|+++|||+|.+|..|+|+
T Consensus       342 ~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN~kD~~G~TP  413 (631)
T PHA02792        342 KYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDINKIDKHGRSI  413 (631)
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccccccccCcch
Confidence            4677899999999999999999999988774  6999998776554   46889999999999999999985

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.89  E-value=1.1e-05  Score=79.03  Aligned_cols=77  Identities=32%  Similarity=0.411  Sum_probs=69.5

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhc-CCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~T~  608 (608)
                      .+..+.+...++.+|+..|++..++.+.-.|.|.+..|++.+|+||+|+..|+.+++++|++. +.|++.+|.-|+|+
T Consensus       499 ~~~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtP  576 (622)
T KOG0506|consen  499 GGPRENDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTP  576 (622)
T ss_pred             cCcccccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCc
Confidence            334556667789999999999999999999999999999999999999999999999999974 89999999999885

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=97.88  E-value=7e-06  Score=85.79  Aligned_cols=77  Identities=19%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..|..+++.+|.++..+..+.++.|+++|++++..|. .|+||||-|...|+.|++-+|+++|+...++|++|.++
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsp  122 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSP  122 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCH
Confidence            455677788999999999999999999999999999985 59999999999999999999999999999999999763

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=97.87  E-value=4.2e-05  Score=64.50  Aligned_cols=72  Identities=38%  Similarity=0.521  Sum_probs=61.7

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+.+++++|+..++.+.++.+++.|.+.+..+..|.+|+|.|+..++.+++++|+++|++++..+..|.|+
T Consensus         5 ~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   76 (126)
T cd00204           5 EDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTP   76 (126)
T ss_pred             cCCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            345688899999999999999999998888888889999999999999999999999998888888777763

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=97.81  E-value=0.00015  Score=76.21  Aligned_cols=55  Identities=16%  Similarity=0.443  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      +..|+||+.+++||+|||++.|.|..+|+++++..++|+=++..+++.++..+..
T Consensus       116 f~~al~fs~tv~TTIGYG~i~P~T~~Gr~~~i~YaliGIPl~li~l~~~g~~l~~  170 (433)
T KOG1418|consen  116 FSSALLFSITVITTIGYGNIAPRTDAGRLFTILYALVGIPLMLLILADIGKFLAD  170 (433)
T ss_pred             cchhHhhhhheeeeccCCcccCCcCcchhHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            4599999999999999999999999999999999999999999999999887764

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=97.60  E-value=0.00022  Score=67.21  Aligned_cols=55  Identities=24%  Similarity=0.451  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCCh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNL--------REMVFIMIYVSFDMILGAYLIGNMTALIV  319 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~--------~e~~~~~~~~~~g~~~~a~~i~~i~~~~~  319 (608)
                      .|++|+||.++|+||+|+||..+-..        .-+.+..+++++|+.+++-.++.+.-.+.
T Consensus       186 syfds~YyCFITltTIGFGDyValQ~~~alq~qplYv~~sf~fIL~Gl~vi~a~~NllvLrf~  248 (350)
T KOG4404|consen  186 SYFDSYYYCFITLTTIGFGDYVALQQDAALQSQPLYVFFSFVFILLGLCVIYALLNLLVLRFM  248 (350)
T ss_pred             chhhhhheeeeeeeeccccchhhhcchhhhhCCCceehHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37899999999999999999877432        33456667778888887766655544443

>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.00051  Score=66.53  Aligned_cols=100  Identities=16%  Similarity=0.238  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCCC---CCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCc
Q 007323          209 IVKLIAVELYCSHIAACIFYYLATTLPPEQE---GYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV  285 (608)
Q Consensus       209 ~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~---~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi  285 (608)
                      ++...+.+++...+||++||+++...++-..   +.+|.+..             .-...+..||-|++-|=||+|||--
T Consensus        66 lliF~~sf~~SWl~Fg~iwwlIA~~hGDL~~~~~~~~~tpCV-------------~nV~sf~sAFLFSiETQtTIGYG~R  132 (400)
T KOG3827|consen   66 LLIFSLSFVLSWLFFGVIWWLIAYAHGDLEPDPPGENHTPCV-------------MNVHSFTSAFLFSIETQTTIGYGFR  132 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCCcccCCCCcCCCcce-------------eeccchhhhheeeeeeeeeeecccc
Confidence            3444445555566799999999876543221   22333221             1234567899999999999999985


Q ss_pred             ccC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007323          286 HAV--NLREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (608)
Q Consensus       286 ~p~--~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~  321 (608)
                      .+.  =+...+..++-+++|+++-|+++|.+.+.+.+.
T Consensus       133 ~vTeeCP~aI~ll~~Q~I~g~ii~afm~G~i~aKiarP  170 (400)
T KOG3827|consen  133 YVTEECPEAIFLLVLQSILGVIINAFMVGAIFAKIARP  170 (400)
T ss_pred             ccCccChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence            543  355566667778999999999999999888763

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.58  E-value=0.00011  Score=77.58  Aligned_cols=70  Identities=21%  Similarity=0.277  Sum_probs=65.6

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC--CCCcCCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD--INLKGNSIMQI  608 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~g~T~  608 (608)
                      +..||..||..+..+.+++|+++|||++++|..|+|.||..+.+-..++=.+++++||+  ..++|++|.|+
T Consensus       240 GEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTP  311 (782)
T KOG3676|consen  240 GEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTP  311 (782)
T ss_pred             ccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCCh
Confidence            34689999999999999999999999999999999999999999888889999999999  99999999986

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.56  E-value=0.00017  Score=69.04  Aligned_cols=66  Identities=24%  Similarity=0.285  Sum_probs=58.4

Q ss_pred             hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCC
Q 007323          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI  605 (608)
Q Consensus       540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g  605 (608)
                      ...+..||..|+.+.+++|++.|.++|++|....+||.+|+..||.+.|++|+++||--.--.-+|
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G  102 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDG  102 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCc
Confidence            456788999999999999999999999999999999999999999999999999998654333333

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=97.55  E-value=0.00021  Score=67.51  Aligned_cols=74  Identities=35%  Similarity=0.444  Sum_probs=66.6

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc-----HHHHHHHHhcCC---CCCCcCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY-----EEIMTFLIQKGV---DINLKGNSIM  606 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~-----~~~v~~Ll~~ga---~~~~~~~~g~  606 (608)
                      .+.....+++.++..+....+..++..|++++..+..|.||||.|+..++     .+++++|++.|+   +.+.+|..|+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~  148 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGN  148 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCC
Confidence            34446778899999999999999999999999999999999999999999     999999999999   6666699999


Q ss_pred             CC
Q 007323          607 QI  608 (608)
Q Consensus       607 T~  608 (608)
                      |+
T Consensus       149 tp  150 (235)
T COG0666         149 TP  150 (235)
T ss_pred             ch
Confidence            85

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=97.46  E-value=0.0004  Score=78.21  Aligned_cols=33  Identities=33%  Similarity=0.561  Sum_probs=30.7

Q ss_pred             CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323          570 YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG  602 (608)
Q Consensus       570 ~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  602 (608)
                      ..|.||||.|+..|+.+++++|+++|||+|+++
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~  158 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERGASVPARA  158 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCc
Confidence            469999999999999999999999999999764

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.46  E-value=0.00014  Score=72.88  Aligned_cols=66  Identities=29%  Similarity=0.403  Sum_probs=41.8

Q ss_pred             ccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHh
Q 007323          528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ  593 (608)
Q Consensus       528 ~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  593 (608)
                      ....+...+..+.+|+|.|+..++.+.++.|+.+|+++...+..||+|||-|+..|+.+++..++.
T Consensus        44 ~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr  109 (560)
T KOG0522|consen   44 VSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLR  109 (560)
T ss_pred             hhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHH
Confidence            444455555555666666666666666666666666666666666666666666666665554443

>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle

Probab=97.36  E-value=0.005  Score=51.98  Aligned_cols=105  Identities=16%  Similarity=0.172  Sum_probs=87.7

Q ss_pred             CCCHHHHHHHHHH-ceeeeecCCCeEEccCC-ccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC---
Q 007323          397 GCSSEFINQIVIR-LHEEFFLPGEVIMEKGN-VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI---  471 (608)
Q Consensus       397 ~l~~~~l~~l~~~-~~~~~~~~g~~i~~~g~-~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~---  471 (608)
                      +.|....++++.+ .+.....+|+.-..||. +.|.+-++++|++.+..   +|+  .+..+.|-++....++....   
T Consensus        14 ~Vs~~~Fk~iv~~~~~i~~L~~~~~YAvE~~T~~drLSlLLsGr~~Vs~---~g~--fLH~I~p~qFlDSPEW~s~~~s~   88 (153)
T PF04831_consen   14 KVSRQQFKKIVGCCCEIRTLKKGETYAVEGKTPIDRLSLLLSGRMRVSC---DGR--FLHYIYPYQFLDSPEWESLRPSE   88 (153)
T ss_pred             CCCHHHHHHHHhhhceEEEecCCceeeecCCcccceEeEEEcCcEEEEE---CCE--eeEeecccccccChhhhccccCC
Confidence            4688889999887 77889999999888886 46799999999999876   554  68889999999988876543   


Q ss_pred             --CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHH
Q 007323          472 --PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK  506 (608)
Q Consensus       472 --~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  506 (608)
                        ...+|+.|.++|..+.-+++.+..++...|-+..-
T Consensus        89 ~~~FQVTitA~~~Cryl~W~R~kL~~~l~~~~~L~~v  125 (153)
T PF04831_consen   89 DDKFQVTITAEEDCRYLCWPREKLYLLLAKDPFLAAV  125 (153)
T ss_pred             CCeEEEEEEEcCCcEEEEEEHHHHHHHHhhCHHHHHH
Confidence              34689999999999999999999999988755443

It is represented by a conserved region which includes three potential transmembrane domains []. The strong conservation of POP genes during evolution and their preferential expression in heart and skeletal muscle suggest that these novel proteins may have an important function in these tissues in vertebrates.; GO: 0016020 membrane

>PRK11832 putative DNA-binding transcriptional regulator; Provisional

Probab=97.34  E-value=0.002  Score=58.25  Aligned_cols=95  Identities=9%  Similarity=0.035  Sum_probs=76.1

Q ss_pred             HHHHHHHceeeeecCCCeE-EccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEec
Q 007323          403 INQIVIRLHEEFFLPGEVI-MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE  481 (608)
Q Consensus       403 l~~l~~~~~~~~~~~g~~i-~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~  481 (608)
                      ...+....++..+++|..+ +.+....+.++++.+|.+.+..  .||  ..+....+..+||-...+.+....+..+|.+
T Consensus        15 ~~~L~~~g~~~~~~~~~~~i~~~~~~~~~~~ll~~G~vsirr--~d~--ll~~t~~aP~IlGl~~~~~~~~~~~~l~ae~   90 (207)
T PRK11832         15 DKCLSRYGTRFEFNNEKQVIFSSDVNNEDTFVILEGVISLRR--EEN--VLIGITQAPYIMGLADGLMKNDIPYKLISEG   90 (207)
T ss_pred             HHHhhccCCeEecCCCcEEeccccCCCceEEEEEeceEEEEe--cCC--eEEEeccCCeEeecccccCCCCceEEEEEcC
Confidence            4455566778899999997 5444445689999999999942  343  5777888889999988776666668899999


Q ss_pred             eeeeEEechhhHHHHHHHhh
Q 007323          482 LCRLLRIDKQSFTNIIDIYF  501 (608)
Q Consensus       482 ~~~l~~l~~~~~~~ll~~~~  501 (608)
                      +|+++.+|.++|.++++++.
T Consensus        91 ~c~~~~i~~~~~~~iie~~~  110 (207)
T PRK11832         91 NCTGYHLPAKQTITLIEQNQ  110 (207)
T ss_pred             ccEEEEeeHHHHHHHHHHhc
Confidence            99999999999999998864

>PLN03223 Polycystin cation channel protein; Provisional

Probab=97.33  E-value=0.046  Score=61.78  Aligned_cols=56  Identities=21%  Similarity=0.247  Sum_probs=31.7

Q ss_pred             CChhHHHHHHHHHHHHHHHHHHhchhee--------eccCCCcCeehHHHHHHHHHHHHHHhhc
Q 007323           69 DNRWYRAWTKFILIWAVYSSIFTPVEFG--------FFRGLSKNLYVLDIVGQIAFLFDIVLQF  124 (608)
Q Consensus        69 ~s~~~~~w~~~~~~~~~~~~~~~p~~~~--------f~~~~~~~~~~~~~~~~~~f~~d~~~~f  124 (608)
                      .+.+....+++++++++|.++---..+.        +..-+.+.|.++|++..++.+.=+++.|
T Consensus      1171 ~DyfvLacEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIvLYF 1234 (1634)
T PLN03223       1171 EDWVRFAMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIMMWF 1234 (1634)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHHHHH
Confidence            3445555566666666665554433221        1112345688899887777777666544

>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]

Probab=97.13  E-value=8e-05  Score=70.10  Aligned_cols=50  Identities=20%  Similarity=0.392  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMT  315 (608)
Q Consensus       266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~  315 (608)
                      +.-||||+++.+||+|||-.+|.|..+|+|+|+..++|+-+.-..+..++
T Consensus        81 F~GaFYFa~TVItTIGyGhstP~T~~GK~Fcm~Yal~Gipl~lvmFqs~g  130 (350)
T KOG4404|consen   81 FAGAFYFATTVITTIGYGHSTPSTDGGKAFCMFYALVGIPLTLVMFQSIG  130 (350)
T ss_pred             cCcceEEEEEEEeeeccCCCCCCCcCceehhhhHHHhcCchHHHHHHHHH
Confidence            44799999999999999999999999999999999998877665554443

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=97.12  E-value=0.00092  Score=61.86  Aligned_cols=67  Identities=24%  Similarity=0.255  Sum_probs=56.9

Q ss_pred             hhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCC
Q 007323          541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQ  607 (608)
Q Consensus       541 ~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T  607 (608)
                      .++..+...++.+....|++.--++|.+|..|.+||..|+.+|+.++|++|++.|||+|..- ..+.|
T Consensus        14 ~~Lle~i~Kndt~~a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YT   81 (396)
T KOG1710|consen   14 SPLLEAIDKNDTEAALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYT   81 (396)
T ss_pred             hHHHHHHccCcHHHHHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCccccccccc
Confidence            45555677788888888888877799999999999999999999999999999999999764 35554

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.10  E-value=0.00084  Score=67.59  Aligned_cols=68  Identities=29%  Similarity=0.355  Sum_probs=57.6

Q ss_pred             hhHhHHHhcCCHHHHHHHH--HcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          541 LKVNSAAYHGDLYQLEGLI--RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       541 ~~L~~aa~~~~~~~~~~Ll--~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++|.++...+.+-....+  +.+..++..|..|.||||.|+..|+.+.++.|+.+|||+.++|++|||+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~   91 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSP   91 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccH
Confidence            5578888777776665543  3456777889999999999999999999999999999999999999985

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=97.09  E-value=0.00094  Score=67.61  Aligned_cols=69  Identities=30%  Similarity=0.341  Sum_probs=36.4

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCC--C--CCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADP--N--RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~--~--~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ....|..|....++..+-.|+.+|...  |  ..+.+|+||||+|+..|+..+.++|+=+|+|+.++|..|.|
T Consensus       624 lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t  696 (749)
T KOG0705|consen  624 LGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRT  696 (749)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCch
Confidence            333444455555555555555555221  1  22344566666666666666666666556666666666555

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=97.08  E-value=0.00072  Score=70.92  Aligned_cols=79  Identities=22%  Similarity=0.087  Sum_probs=72.6

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ...+.++....+.+|.|+.+++.+..+.|++..+-.+..|..|.+|||+|+..|+.++++.|+.++..+|+.+.+|.|+
T Consensus        40 ds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tp  118 (854)
T KOG0507|consen   40 DSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETP  118 (854)
T ss_pred             ccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCc
Confidence            3456677788999999999999999999999999888889999999999999999999999999999999999999874

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.05  E-value=0.014  Score=68.62  Aligned_cols=106  Identities=19%  Similarity=0.187  Sum_probs=71.7

Q ss_pred             eehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhHhhhhccHHHHHhhcCchhHHHHHHHHHH
Q 007323          105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRL  183 (608)
Q Consensus       105 ~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl  183 (608)
                      +++.+.+.-.+|.+|+.+....           .+|    +.|+++ |.++|.+-+. +.++.........+..||.+|+
T Consensus       475 l~~~~~vF~~lF~~Em~~ki~a-----------l~~----~~yF~~~~n~fD~~iv~-l~~~~~~~~~~~g~svLr~frl  538 (1592)
T KOG2301|consen  475 LYLGNVVFTGLFTVEMILKIYA-----------LGP----RNYFRRGWNIFDLIIVL-LSLLELLLKNVYGLSVLRSFRL  538 (1592)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----------cCc----HHHHhhhcchheEEEEe-hhhHHhcccchHHHHHHHHHHH
Confidence            5677888888999999988532           222    667777 6699988777 6665555555566788888888


Q ss_pred             HHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHHHHHHH
Q 007323          184 YRVRKVSQFFHKMEKDIRI-NYMFSRIVKLIAVELYCSHIAACI  226 (608)
Q Consensus       184 ~r~~r~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~h~~ac~  226 (608)
                      +|++|+.+++..+++.... ......+..|++++++++.++|-+
T Consensus       539 lRIfkl~k~wp~l~~lv~~i~ns~~~l~~L~l~l~i~i~Ifa~~  582 (1592)
T KOG2301|consen  539 LRIFKLIKSWPTLNDLVKSIFNSGKALGNLVLFLFIFIFIFAAI  582 (1592)
T ss_pred             HHHHHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888777765432 233445566665555555555443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=96.96  E-value=0.0011  Score=67.18  Aligned_cols=65  Identities=28%  Similarity=0.315  Sum_probs=60.3

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN  599 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  599 (608)
                      .+.++.++||.||..++....++|+-+|+|+.++|..|+|+|.+|.+.|..+|...|+.+|+..+
T Consensus       657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  657 GEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             cCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            45667889999999999999999999999999999999999999999999999999999997643

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=96.94  E-value=0.001  Score=67.06  Aligned_cols=74  Identities=16%  Similarity=0.212  Sum_probs=65.0

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCC--CCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGAD--PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~--~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++.+....+|+|+..|+-+++++++++|..  .+..|..|.|+||.|+..++..++++|++.||...-.|..|.|+
T Consensus       895 ~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp  970 (1004)
T KOG0782|consen  895 QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTP  970 (1004)
T ss_pred             eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCCh
Confidence            344556679999999999999999999953  35568889999999999999999999999999999999999985

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=96.81  E-value=0.0016  Score=40.25  Aligned_cols=32  Identities=28%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDY  570 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~  570 (608)
                      +.+|+|+|+..+..+.++.|+++|++++.+|.
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            46899999999999999999999999998763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF13606 Ank_3: Ankyrin repeat

Probab=96.79  E-value=0.0015  Score=39.17  Aligned_cols=29  Identities=28%  Similarity=0.299  Sum_probs=26.6

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNR  567 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~  567 (608)
                      +.+|+|.|+..++.+++++|+++|+++|.
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            46899999999999999999999999874

>KOG2301 consensus Voltage-gated Ca2+ channels, alpha1 subunits [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.62  E-value=0.061  Score=63.55  Aligned_cols=137  Identities=19%  Similarity=0.117  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHHHHHhchheeeccC---CCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cc
Q 007323           77 TKFILIWAVYSSIFTPVEFGFFRG---LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SF  152 (608)
Q Consensus        77 ~~~~~~~~~~~~~~~p~~~~f~~~---~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f  152 (608)
                      ..+++.+++.++...+..-.....   ....+.+.|++.-.+|++|+++....            +.-   .-|+++ |.
T Consensus       843 ~~~I~~~illSs~ala~ed~~~~~~~~~~~~L~y~D~~Ft~iFt~Em~lK~ia------------~Gf---~~y~rn~w~  907 (1592)
T KOG2301|consen  843 EAFILTVILISSLALAFEDVRGENRPTINGILEYADYIFTYIFTFEMLLKWIA------------YGF---FFYFRNAWN  907 (1592)
T ss_pred             HHHHHHHHHHhhhcccccCcchhhchhhhhHHHHHHHHHHHHHHHHHHHHHHH------------hHH---HHHHhhHHh
Confidence            344444444444444432222221   22346789999999999999998432            212   229999 77


Q ss_pred             hhHhhhhccHHHHHhhcCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          153 IIDLFSCMPWDLIYKASGR-KEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFY  228 (608)
Q Consensus       153 ~iDl~s~lP~~~~~~~~~~-~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~  228 (608)
                      ++|++.+.-..+.+.+... ...++.+|.+|.+|-+|....+.+++.... .-..+..++..++..+++..++|++-.
T Consensus       908 ~lDf~Vv~vslisl~~~~~~~~~ik~lr~lRaLRPLR~i~r~~~mr~Vv~~l~~a~~~I~nv~lV~li~~fiFai~gv  985 (1592)
T KOG2301|consen  908 WLDFVVVIVSLISLIASLKILSLIKSLRILRALRPLRALSRFPGMRVVVLALFGGLPEIFNVLLVCLIFWFIFAIMGV  985 (1592)
T ss_pred             hhhHHHhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999877665544433222 334556666666666666555555332111 112233444444444455555555543

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=96.58  E-value=0.0031  Score=62.76  Aligned_cols=57  Identities=30%  Similarity=0.388  Sum_probs=53.1

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHh
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ  593 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  593 (608)
                      ..+.+|||.|+..|....+++|.-.|+|+++.|..|.||+.+|...||.++.+.|++
T Consensus       165 ekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  165 EKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             ccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            446799999999999999999999999999999999999999999999999887765

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=96.58  E-value=0.0016  Score=71.59  Aligned_cols=72  Identities=31%  Similarity=0.332  Sum_probs=67.1

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....+++|.++..+....++.|++.|+++|..|..|++|+|.+...|+...+.+|+++||+.++.|.+|.++
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~  725 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLP  725 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcch
Confidence            344678999999999999999999999999999999999999999999999999999999999999998763

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=96.55  E-value=0.0063  Score=62.88  Aligned_cols=112  Identities=16%  Similarity=0.284  Sum_probs=86.9

Q ss_pred             HHhHhhhcccccccCCCHHHHHHHHHHcee-eeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe
Q 007323          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS  461 (608)
Q Consensus       383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~-~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~  461 (608)
                      +...++..+.|-|.+++-...++|+..|.. +.-.+|.+|...|+.-++.++|+.|.|++..  ++|+.   ..+.-|+.
T Consensus       277 eqLLeFMhqlpAFAnmtMSvrReLC~vMvFaVVe~AGtivL~dgeeLDSWsVIlNG~VEv~~--PdGk~---e~l~mGnS  351 (1283)
T KOG3542|consen  277 EQLLEFMHQLPAFANMTMSVRRELCLVMVFAVVEDAGTIVLADGEELDSWSVILNGCVEVVK--PDGKR---EELKMGNS  351 (1283)
T ss_pred             HHHHHHHHhchHhhcccHHHHHHHHHHHHHHHHhhcCeEEecCCcccceeEEEecceEEEec--CCCce---EEeecccc
Confidence            344677888999999999999999987753 4556899999999999999999999999987  67764   56777999


Q ss_pred             ecchhhhcCCCcccEEEE-eceeeeEEechhhHHHHHHH
Q 007323          462 FGEVSILCNIPQPYTVQV-CELCRLLRIDKQSFTNIIDI  499 (608)
Q Consensus       462 fGe~~~~~~~~~~~~~~a-~~~~~l~~l~~~~~~~ll~~  499 (608)
                      ||...-...+-..-.+++ +.+|+...+..+++..++..
T Consensus       352 FG~~PT~dkqym~G~mRTkVDDCqFVciaqqDycrIln~  390 (1283)
T KOG3542|consen  352 FGAEPTPDKQYMIGEMRTKVDDCQFVCIAQQDYCRILNT  390 (1283)
T ss_pred             cCCCCCcchhhhhhhhheecccceEEEeehhhHHHHHHH
Confidence            997654332222222333 67899999999999887764

>smart00248 ANK ankyrin repeats

Probab=96.15  E-value=0.0089  Score=34.83  Aligned_cols=29  Identities=59%  Similarity=1.003  Sum_probs=26.2

Q ss_pred             CCchHHhHHHhcCcHHHHHHHHhcCCCCC
Q 007323          571 DGRSPLHLAASRGYEEIMTFLIQKGVDIN  599 (608)
Q Consensus       571 ~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  599 (608)
                      .|.||+|.|+..++.++++.|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999998775

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=95.98  E-value=0.025  Score=49.48  Aligned_cols=70  Identities=20%  Similarity=0.144  Sum_probs=62.2

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL  600 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  600 (608)
                      +++..|.-..+++++|+..+..+++.+|+.+| +.+...|..|.+++-+|-..|..+.++.|.+.-.+-..
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~   74 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSH   74 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCC
Confidence            46778888999999999999999999999999 89999999999999999999999999999887444333

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=95.95  E-value=0.0056  Score=60.76  Aligned_cols=66  Identities=23%  Similarity=0.287  Sum_probs=59.3

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHc-CCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV  596 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  596 (608)
                      +++..|-+..+.||.||..|+.+++++|++. +.+++..|.+|+|||.-|...+|.+++++|-+...
T Consensus       531 D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  531 DLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             cccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHHHHHHHHHhc
Confidence            4566777888999999999999999999974 79999999999999999999999999999987644

>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms]

Probab=95.73  E-value=0.012  Score=60.78  Aligned_cols=105  Identities=13%  Similarity=0.169  Sum_probs=83.1

Q ss_pred             CHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceee
Q 007323          373 PISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY  452 (608)
Q Consensus       373 p~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~  452 (608)
                      |+.|+.........+.|.+...|.++-...++.++...+...++...++|+.|+.+.+.|++++|.|-+.     |    
T Consensus        23 ~~~~~t~~~~rN~~~~lh~ld~~snl~~~~lk~l~~~aryer~~g~~ilf~~~~var~wyillsgsv~v~-----g----   93 (1283)
T KOG3542|consen   23 PPHLRTPDDIRNVYEQLHQLDTFSNLFIGPLKALCKTARYERHPGQYILFRDGDVARSWYILLSGSVFVE-----G----   93 (1283)
T ss_pred             CcccCChhhhhhHHHHHhhhhhhhhhhhhhHHHhhhhhhhhcCCCceEEecccchhhheeeeeccceEee-----c----
Confidence            3444444333344567888999999999999999999999999999999999999999999999998653     2    


Q ss_pred             eEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEech
Q 007323          453 VSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK  490 (608)
Q Consensus       453 ~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~  490 (608)
                       ..+.|-..||..   .|+.|...+-.+.+++...++.
T Consensus        94 -qi~mp~~~fgkr---~g~~r~~nclllq~semivid~  127 (1283)
T KOG3542|consen   94 -QIYMPYGCFGKR---TGQNRTHNCLLLQESEMIVIDY  127 (1283)
T ss_pred             -ceecCccccccc---cccccccceeeecccceeeeec
Confidence             234455567765   5777889999999999988854

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=95.44  E-value=0.027  Score=56.55  Aligned_cols=59  Identities=22%  Similarity=0.259  Sum_probs=50.0

Q ss_pred             CCHHHHHHHHHcCCCCCC------CCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          550 GDLYQLEGLIRAGADPNR------TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       550 ~~~~~~~~Ll~~ga~~~~------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +....++.|.+.+.+.|.      .+..-.|+||+|+..|..++|..+|+.|+|+.++|..|.|+
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtp  466 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTP  466 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCc
Confidence            445678888888877653      35667899999999999999999999999999999999986

>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism]

Probab=95.10  E-value=0.0046  Score=64.95  Aligned_cols=47  Identities=26%  Similarity=0.508  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhH--------HHHHHHHHHHHHHHHHHH
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREM--------VFIMIYVSFDMILGAYLI  311 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~--------~~~~~~~~~g~~~~a~~i  311 (608)
                      .|+.|+||+++++||+||||+.|.+...+        .+..++.++|....+...
T Consensus       242 ~f~~~~Yf~fisltTIG~GD~vp~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  296 (433)
T KOG1418|consen  242 SFIEAFYFSFISLTTIGFGDIVPRTLLGRFRREELVDPLASVWILSGLALLALVL  296 (433)
T ss_pred             eeEeeeeEEEEEeeeecCCccccCCCcceeeccccccchhHHHHHhhhhHHHHHh
Confidence            35689999999999999999999998866        577777777877776655

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=95.10  E-value=0.015  Score=63.79  Aligned_cols=72  Identities=24%  Similarity=0.313  Sum_probs=59.0

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCc-CCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK-GNSIMQ  607 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~-~~~g~T  607 (608)
                      +....++|..||..++.+.++.++..|+++..+|..|.+||.+|+..||..+|+-|+.+.|++++. |+.+.|
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt  826 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDT  826 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCc
Confidence            344556788888899999999999999999888988999998888888888888888888888875 455555

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=94.89  E-value=0.035  Score=61.14  Aligned_cols=61  Identities=31%  Similarity=0.463  Sum_probs=31.2

Q ss_pred             hhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCc
Q 007323          541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK  601 (608)
Q Consensus       541 ~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  601 (608)
                      +++..+|..+..++++.|+.+|++...++-...|||.+|+.-|+.++++.|+.+|+++|.+
T Consensus       826 t~lSlacsggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSr  886 (2131)
T KOG4369|consen  826 TMLSLACSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSR  886 (2131)
T ss_pred             ceEEEecCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccc
Confidence            3344455555555555555555555444444455555555555555555555555555444

>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=94.78  E-value=0.15  Score=55.54  Aligned_cols=136  Identities=15%  Similarity=0.118  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHhchheeec-cCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cch
Q 007323           76 WTKFILIWAVYSSIFTPVEFGFF-RGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFI  153 (608)
Q Consensus        76 w~~~~~~~~~~~~~~~p~~~~f~-~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f~  153 (608)
                      -+.++.+++..+++.....-.-. ....+.+.+.++.+.++|++|.++.....-               .++|.+. |--
T Consensus      1443 ld~fit~ii~LnvVtms~ehyqqp~sldealkycny~ft~vfV~EaV~klvafG---------------~rrFfkdrwnq 1507 (1956)
T KOG2302|consen 1443 LDQFITFIICLNVVTMSEEHYQQPTSLDEALKYCNYRFTAVFVLEAVLKLVAFG---------------ERRFFKDRWNQ 1507 (1956)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCcccHHHHhhhcceeeeehhHHHHHHHHHHHh---------------HHHHHhhhhhh
Confidence            34445555555555554422111 122345667788888899999998865431               2677776 557


Q ss_pred             hHhhhhccHHH--HH-------hhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Q 007323          154 IDLFSCMPWDL--IY-------KASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIA  223 (608)
Q Consensus       154 iDl~s~lP~~~--~~-------~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~  223 (608)
                      +|+.-++-...  .+       ...-+...+|+.|++|+-|++|+.+.-.+++..+. +...+-++..+-+.++++..+.
T Consensus      1508 ldlaivlls~mgitleeie~naalpinptiirimrvlriarvlkllkmatgmralldtvvqalpqvgnlgllfmllffiy 1587 (1956)
T KOG2302|consen 1508 LDLAIVLLSVMGITLEEIEINAALPINPTIIRIMRVLRIARVLKLLKMATGMRALLDTVVQALPQVGNLGLLFMLLFFIY 1587 (1956)
T ss_pred             hhHHHHHHHHhcccHhheeecccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHH
Confidence            78643322111  00       01122345566666666666666555555544322 2233334444444444444444


Q ss_pred             HHH
Q 007323          224 ACI  226 (608)
Q Consensus       224 ac~  226 (608)
                      |.+
T Consensus      1588 aal 1590 (1956)
T KOG2302|consen 1588 AAL 1590 (1956)
T ss_pred             HHH
Confidence            444

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=94.53  E-value=0.0093  Score=63.36  Aligned_cols=45  Identities=29%  Similarity=0.453  Sum_probs=41.1

Q ss_pred             CCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC-CCCCC
Q 007323          564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN-SIMQI  608 (608)
Q Consensus       564 ~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~T~  608 (608)
                      -.|..|..|+|+||+|++.+..++++.|++||+|++.+|. .|+|.
T Consensus        44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~ta   89 (1267)
T KOG0783|consen   44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTA   89 (1267)
T ss_pred             hhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchH
Confidence            3577899999999999999999999999999999999995 78873

>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=93.37  E-value=8.1  Score=42.53  Aligned_cols=41  Identities=15%  Similarity=0.323  Sum_probs=33.3

Q ss_pred             hhCCHHHHHHHHHHHhHhhhc-----ccccccCCCHHHHHHHHHHc
Q 007323          370 QDIPISIRAKISQTLYLPYIE-----KVPLFKGCSSEFINQIVIRL  410 (608)
Q Consensus       370 ~~lp~~Lr~~i~~~~~~~~l~-----~~~~f~~l~~~~l~~l~~~~  410 (608)
                      ++||+.||+.|..+...+...     +..++++|+++..+++..++
T Consensus       371 ~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~hL  416 (727)
T KOG0498|consen  371 RQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKRHL  416 (727)
T ss_pred             ccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHHHH
Confidence            689999999999988776554     45678899999888887765

>KOG3599 consensus Ca2+-modulated nonselective cation channel polycystin [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=92.38  E-value=16  Score=40.98  Aligned_cols=22  Identities=18%  Similarity=0.134  Sum_probs=14.9

Q ss_pred             cCeehHHHHHHHHHHHHHHhhc
Q 007323          103 KNLYVLDIVGQIAFLFDIVLQF  124 (608)
Q Consensus       103 ~~~~~~~~~~~~~f~~d~~~~f  124 (608)
                      +.|.++|+++.++.++=++++.
T Consensus       498 s~wN~ld~~i~~ls~~~~~~~~  519 (798)
T KOG3599|consen  498 SKWNWLDLAIVLLSVVLLVLMI  519 (798)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            3466777777777777666653

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=91.63  E-value=9.8  Score=41.83  Aligned_cols=130  Identities=13%  Similarity=0.172  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-----HHHHhccCCCCCCCCceecccccCC
Q 007323          177 YLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACI-----FYYLATTLPPEQEGYTWIGSLKMGD  251 (608)
Q Consensus       177 ~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~-----~~~~~~~~~~~~~~~~w~~~~~~~~  251 (608)
                      ++.++|++-++.+..++.-+.  +++......+++.++.+++++.-|+|.     ||+........    .|....... 
T Consensus       474 V~S~lrl~~i~t~n~~lGPlq--ISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~----~~~~~~~~~-  546 (822)
T KOG3609|consen  474 VLSFLKLFYIFTMNPSLGPLQ--ISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKI----DQDYTKTTD-  546 (822)
T ss_pred             HHHHHHHHHHhhccccccchh--hhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccc----ccccccccc-
Confidence            345555555555554444433  233344556666666666555555554     55544332221    111111000 


Q ss_pred             CCcccccccchHHHHHHHHHHHHHHhhccccCCccc-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          252 YSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA-VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       252 ~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p-~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                       .+      +....=..+++|++-+++-++--++.- ....|-+..+++.+..++....++..+.+++.+
T Consensus       547 -~f------sti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnn  609 (822)
T KOG3609|consen  547 -SF------STIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSN  609 (822)
T ss_pred             -cc------ccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHh
Confidence             11      122334478999998776544222211 123333333333333333334445555555554

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=91.42  E-value=0.067  Score=58.98  Aligned_cols=41  Identities=37%  Similarity=0.530  Sum_probs=35.6

Q ss_pred             HcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323          560 RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL  600 (608)
Q Consensus       560 ~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  600 (608)
                      -.|..++.+|..||||||+|+.+|+..++..|.+.|++...
T Consensus       629 ~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~  669 (975)
T KOG0520|consen  629 ADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGA  669 (975)
T ss_pred             ecccccccccCCCCcccchHhhcCHHHHHHHHHHhcccccc
Confidence            34566777899999999999999999999999998888764

>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=90.67  E-value=14  Score=42.79  Aligned_cols=89  Identities=10%  Similarity=0.055  Sum_probs=47.1

Q ss_pred             ChhHHHHHHHHHHHHHHHHHHhchheeeccCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhh
Q 007323           70 NRWYRAWTKFILIWAVYSSIFTPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLR  149 (608)
Q Consensus        70 s~~~~~w~~~~~~~~~~~~~~~p~~~~f~~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~  149 (608)
                      +++..+|..++..+.+..++...+...|... +..+-++=++-.+-+.+|-+=+...+  +++     .=+++++.-|-.
T Consensus       790 APIvkFw~~~l~yi~FL~lftYvlLv~~~~~-Ps~~Ew~~~~~iftl~~E~vRq~~~s--e~~-----~l~~kv~v~f~d  861 (1381)
T KOG3614|consen  790 APIVKFWLNVLSYIAFLLLFTYVLLVDFQPS-PSMWEWILFAWIFTLFLEEVRQIFIS--ESG-----LLPQKVRVYFAD  861 (1381)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHheeccCCC-CCccchhHHHHHHHHHHHHHHHHhcC--CCc-----chhhHHHHHHHH
Confidence            4556678777766666666665555666433 33332232333344445555443333  111     012343333444


Q ss_pred             ccchhHhhhhccHHHHH
Q 007323          150 SSFIIDLFSCMPWDLIY  166 (608)
Q Consensus       150 ~~f~iDl~s~lP~~~~~  166 (608)
                      .|+.+|+++++-|.+-+
T Consensus       862 ~wN~~d~~ai~~F~vG~  878 (1381)
T KOG3614|consen  862 FWNLIDLLAILLFLVGP  878 (1381)
T ss_pred             HHHHHHHHHHHHHhhhh
Confidence            48899999998776544

>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys

Probab=90.66  E-value=9.4  Score=39.91  Aligned_cols=23  Identities=26%  Similarity=0.170  Sum_probs=14.0

Q ss_pred             CcCeehHHHHHHHHHHHHHHhhc
Q 007323          102 SKNLYVLDIVGQIAFLFDIVLQF  124 (608)
Q Consensus       102 ~~~~~~~~~~~~~~f~~d~~~~f  124 (608)
                      .+.|.++|++..++.++=+++.+
T Consensus       241 ~~~WN~~e~~ii~ls~~~i~~~~  263 (425)
T PF08016_consen  241 KSFWNWLELLIILLSLAVIVLYF  263 (425)
T ss_pred             hhcCcHHHHHHHHHHHHHHHHHH
Confidence            34577778776666555555444

Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=90.02  E-value=0.77  Score=47.10  Aligned_cols=88  Identities=17%  Similarity=0.210  Sum_probs=67.0

Q ss_pred             HHHHHhccCcchhhhhhhcccccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHH
Q 007323          507 VLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEE  586 (608)
Q Consensus       507 il~~l~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~  586 (608)
                      ++....+-.+.+.....+.......+...+..+.+++|-|+..++..+++++.+.|+.....|..|.||-.-|...|..+
T Consensus       902 llh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~d  981 (1004)
T KOG0782|consen  902 LLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPD  981 (1004)
T ss_pred             HHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCCch
Confidence            34433333333444444444444444445566788999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhc
Q 007323          587 IMTFLIQK  594 (608)
Q Consensus       587 ~v~~Ll~~  594 (608)
                      +..+|-+.
T Consensus       982 laayle~r  989 (1004)
T KOG0782|consen  982 LAAYLESR  989 (1004)
T ss_pred             HHHHHhhh
Confidence            99998754

>PF00060 Lig_chan: Ligand-gated ion channel; InterPro: IPR001320 The ability of synapses to modify their synaptic strength in response to activity is a fundamental property of the nervous system and may be an essential component of learning and memory

Probab=89.44  E-value=0.62  Score=40.40  Aligned_cols=58  Identities=17%  Similarity=0.279  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       262 ~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .......++|+++.+++.-| ++..|.+...|++.+++.++++++.+...+++++.+..
T Consensus        41 ~~~~~~~~~~~~~~~~~~q~-~~~~~~s~s~Ril~~~w~l~~lil~~~Yta~L~s~Lt~   98 (148)
T PF00060_consen   41 WRFSLSNSFWYTFGTLLQQG-SSIRPRSWSGRILLAFWWLFSLILIASYTANLTSFLTV   98 (148)
T ss_dssp             HHHHHHHHHHHCCCCCHHHH-H------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CcccHHHHHHHHHHhhcccc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34567788998888887744 78999999999999999999999999999999998865

There are three classes of ionotropic glutamate receptor, namely NMDA (N-methyl-D-aspartate), AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazole-4-propionic acid) and kainate receptors. They are believed to play critical roles in synaptic plasticity. At many synapses in the brain, transient activation of NMDA receptors leads to a persistent modification in the strength of synaptic transmission mediated by AMPA receptors and kainate receptors can act as the induction trigger for long-term changes in synaptic transmission [].; GO: 0004970 ionotropic glutamate receptor activity, 0005234 extracellular-glutamate-gated ion channel activity, 0016020 membrane; PDB: 3FAT_A 3KFM_A 3KEI_A 3EN3_A 3EPE_B 3FAS_A 2F34_A 3C34_B 3S2V_A 3GBB_B ....

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=88.64  E-value=0.92  Score=49.35  Aligned_cols=60  Identities=27%  Similarity=0.197  Sum_probs=43.4

Q ss_pred             hHhHHHhcCCHHHHHHHHHcCCCC---------C-CCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCc
Q 007323          542 KVNSAAYHGDLYQLEGLIRAGADP---------N-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK  601 (608)
Q Consensus       542 ~L~~aa~~~~~~~~~~Ll~~ga~~---------~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~  601 (608)
                      ++..|...+..+.++.++.+....         + ..-..+.||+..|+.+++.||++.|+.+|+.+..+
T Consensus        91 ALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   91 ALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            344566666667777766543222         1 12245789999999999999999999999998765

>COG4709 Predicted membrane protein [Function unknown]

Probab=86.32  E-value=5.3  Score=35.32  Aligned_cols=76  Identities=21%  Similarity=0.310  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc----cccHHHHHhhC--CHHHHHHHHHHHhHhhhcccccccCCCHH
Q 007323          328 RDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES----SYTEASVLQDI--PISIRAKISQTLYLPYIEKVPLFKGCSSE  401 (608)
Q Consensus       328 ~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~----~~~~~~~l~~l--p~~Lr~~i~~~~~~~~l~~~~~f~~l~~~  401 (608)
                      .+-++++++|++  ++|++.++.+..||+..+.+    +.+|+++.++|  |.++-.|+..+.-.+..+.-|-+++....
T Consensus         4 ~efL~eL~~yL~--~Lp~~~r~e~m~dyeehF~~a~~~GksE~EI~~~LG~P~eiA~ei~s~~~~k~~~~~~~~~n~~~a   81 (195)
T COG4709           4 TEFLNELEQYLE--GLPREERREIMYDYEEHFREAQEAGKSEEEIAKDLGDPKEIAAEILSERGIKKEEVKPTQKNVRRA   81 (195)
T ss_pred             HHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHhhhhcCCCHHHHHHHhCCHHHHHHHHHHHccchHHhccCcccchHHH
Confidence            455777888885  59999999999999877753    56699999976  77777888877777777777777666654


Q ss_pred             HHHH
Q 007323          402 FINQ  405 (608)
Q Consensus       402 ~l~~  405 (608)
                      .+..
T Consensus        82 ii~~   85 (195)
T COG4709          82 IIAL   85 (195)
T ss_pred             HHHH
Confidence            4433

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=85.33  E-value=0.87  Score=50.67  Aligned_cols=55  Identities=24%  Similarity=0.263  Sum_probs=44.2

Q ss_pred             HHHHHHHcCCCCCCC--CCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          554 QLEGLIRAGADPNRT--DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       554 ~~~~Ll~~ga~~~~~--d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..-..+|++.|..  -..|.|+||.|+..+....+++|+.+|+++|.+|..|.|+
T Consensus       636 ~~~~~~~~~~~~n~~~~~~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~p  692 (785)
T KOG0521|consen  636 RIATALAHGCCENWPVVLCIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTP  692 (785)
T ss_pred             hhhhhhcchhhhccchhhhcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCc
Confidence            333334556666543  3568999999999999999999999999999999999875

>KOG4440 consensus NMDA selective glutamate-gated ion channel receptor subunit GRIN1 [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=83.94  E-value=2.9  Score=43.79  Aligned_cols=96  Identities=23%  Similarity=0.272  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChh
Q 007323          212 LIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLR  291 (608)
Q Consensus       212 l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~  291 (608)
                      +.+.+.+.+|+.|-..|++....|.+.-        ...+..    .+.+-..+.-.|+||+-..+..-|-|.-+|.+..
T Consensus       572 LW~lv~~SVhvVal~lYlLDrfSPFgRF--------k~~ds~----~~ee~alnlssAmWF~WGVLLNSGigEgtPRSfS  639 (993)
T KOG4440|consen  572 LWLLVGLSVHVVALMLYLLDRFSPFGRF--------KVNDSE----EEEEDALNLSSAMWFSWGVLLNSGIGEGTPRSFS  639 (993)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCcccce--------eeccCc----cchhhhcchhhhHHHHhHhhhccccCCCCCcchh
Confidence            3345567789999999998776544321        110000    0111223455899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          292 EMVFIMIYVSFDMILGAYLIGNMTALIV  319 (608)
Q Consensus       292 e~~~~~~~~~~g~~~~a~~i~~i~~~~~  319 (608)
                      -+++.+++.=+.+++.|--.+++++.+.
T Consensus       640 ARvLGmVWaGFaMIiVASYTANLAAFLV  667 (993)
T KOG4440|consen  640 ARVLGMVWAGFAMIIVASYTANLAAFLV  667 (993)
T ss_pred             HHHHHHHHhhhheeeehhhhhhhhhhee
Confidence            9999999988888888877888877653

>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins

Probab=83.54  E-value=10  Score=34.31  Aligned_cols=33  Identities=9%  Similarity=-0.004  Sum_probs=23.9

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 007323          201 RINYMFSRIVKLIAVELYCSHIAACIFYYLATT  233 (608)
Q Consensus       201 ~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~  233 (608)
                      .......++..++..+++..++.++..+.-...
T Consensus        92 ~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~  124 (200)
T PF00520_consen   92 RSFPDLFKFILLLFIVLLFFACIGYQLFGGSDN  124 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred             cccccccccccccccccccccchhheecccccc
Confidence            333345678888888888888888998877654

The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=82.49  E-value=1  Score=45.72  Aligned_cols=46  Identities=26%  Similarity=0.372  Sum_probs=41.7

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHH
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA  580 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~  580 (608)
                      .+.-..++||+|+..+..+.+..+++.|+|+...|..|+||-.+++
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            3444678999999999999999999999999999999999998887

>KOG1053 consensus Glutamate-gated NMDA-type ion channel receptor subunit GRIN2A and related subunits [Inorganic ion transport and metabolism; Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=81.69  E-value=20  Score=39.77  Aligned_cols=33  Identities=15%  Similarity=0.375  Sum_probs=29.0

Q ss_pred             ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          286 HAVNLREMVFIMIYVSFDMILGAYLIGNMTALI  318 (608)
Q Consensus       286 ~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~  318 (608)
                      .|+.+..++++.++.++++++.|.-.+++++.+
T Consensus       630 nPKgtTskiMv~VWAfFavifLAsYTANLAAfM  662 (1258)
T KOG1053|consen  630 NPKGTTSKIMVLVWAFFAVIFLASYTANLAAFM  662 (1258)
T ss_pred             CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466889999999999999999998888888754

>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT)

Probab=80.34  E-value=10  Score=34.21  Aligned_cols=56  Identities=18%  Similarity=0.411  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHh----ccccHHHHHhhC--CHHHHHHHHHHHh
Q 007323          328 RDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE----SSYTEASVLQDI--PISIRAKISQTLY  385 (608)
Q Consensus       328 ~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~----~~~~~~~~l~~l--p~~Lr~~i~~~~~  385 (608)
                      ++-+++++++++  ++|++-++++.+||+...+    ++.+|+++.++|  |+.+-+++..+..
T Consensus         4 ~efL~~L~~~L~--~lp~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~~~~   65 (181)
T PF08006_consen    4 NEFLNELEKYLK--KLPEEEREEILEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILAEYS   65 (181)
T ss_pred             HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHHhhh
Confidence            455677788886  5999999999999988775    356799999986  7777777765543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	608
2ptm_A	198	Structure And Rearrangements In The Carboxy-Termina		2e-11
3otf_A	220	Structural Basis For The Camp-Dependent Gating In H		2e-10
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-10
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-10
3bpz_A	202	Hcn2-I 443-460 E502k In The Presence Of Camp Length		5e-10
3u11_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		8e-10
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-10
3etq_A	204	X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2		1e-09
1q3e_A	207	Hcn2j 443-645 In The Presence Of Cgmp Length = 207		1e-09
3ffq_A	202	Hcn2i 443-640 Apo-State Length = 202		2e-09
2q0a_A	200	Structure And Rearrangements In The Carboxy-Termina		2e-09
4hbn_A	205	Crystal Structure Of The Human Hcn4 Channel C-termi		2e-09
3u10_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		2e-09
3u0z_A	210	Tetramerization Dynamics Of The C-Terminus Underlie		1e-08
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-08
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-08
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-08
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-08
1q43_A	207	Hcn2i 443-640 In The Presence Of Camp, Selenomethio		2e-08
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-08
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-08
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		3e-08
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		4e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		6e-08
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		6e-08
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		7e-08
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		8e-08
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-07
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		2e-07
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		3e-07
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		4e-07
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-07
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		4e-07
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		5e-07
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-07
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		6e-07
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		8e-07
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		9e-07
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		9e-07
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		1e-06
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-06
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-06
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		2e-06
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		2e-06
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		3e-06
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		4e-06
2xen_A	91	Structural Determinants For Improved Thermal Stabil		5e-06
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		5e-06
3ukn_A	212	Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN		8e-06
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		2e-05
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		5e-05
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		6e-05
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		6e-05
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		7e-05
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		8e-05
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		8e-05
3so8_A	162	Crystal Structure Of Ankra Length = 162		8e-05
1uoh_A	226	Human Gankyrin Length = 226		1e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		1e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		2e-04
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		2e-04
3r6s_A	247	Crystal Structure Of Glxr Transcription Factor From		2e-04
3d0s_A	227	Camp Receptor Protein From M.Tuberculosis, Camp-Fre		2e-04
2qvs_B	310	Crystal Structure Of Type Iia Holoenzyme Of Camp-De		2e-04
3mzh_A	225	Crystal Structure Of Camp Receptor Protein From Myc		2e-04
3i54_A	249	Crystal Structure Of Mtbcrp In Complex With Camp Le		2e-04
3h3u_A	224	Crystal Structure Of Crp (Camp Receptor Protein) Fr		2e-04
3idb_B	161	Crystal Structure Of (108-268)riib:c Holoenzyme Of		2e-04
3idc_B	164	Crystal Structure Of (102-265)riib:c Holoenzyme Of		2e-04
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-04
3of1_A	246	Crystal Structure Of Bcy1, The Yeast Regulatory Sub		4e-04
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		4e-04
3tnp_B	416	Structure And Allostery Of The Pka Riib Tetrameric		5e-04
3tnq_A	416	Structure And Allostery Of The Pka Riib Tetrameric		5e-04
3i59_A	249	Crystal Structure Of Mtbcrp In Complex With N6-Camp		5e-04
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		6e-04
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		6e-04
1cx4_A	305	Crystal Structure Of A Deletion Mutant Of The Type		6e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		8e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		8e-04

>pdb|2PTM|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 198

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S + ++R+K+  + +Y+   +L   +R++I+ +   +Y    + E  + +++  SIR  +
Sbjct: 5   SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDV 64
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
           +       +  VP F G  S F+ ++V  L  E F P + ++++G   D+++F+  G ++
Sbjct: 65  ANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVD 124
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIID 498
              I  +G     + L   S FGE+ +L    +  +V+    C L  +  Q F  ++D
Sbjct: 125 --IIMSDGV--IATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSVQHFNQVLD 178

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/65 (46%), Positives = 44/65 (67%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           +EL  ++  AA +G+  +++ LI  GAD N +D DGR+PLH AA  G++EI+  LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGA 61
Query: 597 DINLK 601
           D+N K
Sbjct: 62  DVNAK 66

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           +EL  ++  AA +G+  +++ L+  GADPN +D DGR+PLH AA  G++EI+  L+ KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA 61
Query: 597 DINLK 601
           D N K
Sbjct: 62  DPNAK 66

>pdb|3BPZ|A Chain A, Hcn2-I 443-460 E502k In The Presence Of Camp Length = 202

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 42/180 (23%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R KI
Sbjct: 6   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>pdb|3U11|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 9   SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 68
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 69  INFNXRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 126
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++  + L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 127 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 62.0 bits (149), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           +EL  ++  AA +G+  +++ LI  GAD N +D DGR+PLH AA  G++E++  LI KG 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA 61
Query: 597 DINLK 601
           D+N K
Sbjct: 62  DVNAK 66

>pdb|3ETQ|A Chain A, X-Ray Structure Of Cysteine-Free Fragment Of Mhcn2 C- Terminal Region From Amino Acids 443-630 Including C508n, C584s, And C601s Mutations Length = 204

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 43/187 (22%), Positives = 92/187 (49%), Gaps = 8/187 (4%)
Query: 317 LIVKGSKTEK--FRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIP 373
           L+ +GS + +  +++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++ 
Sbjct: 1   LVPRGSDSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELN 60
Query: 374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYF 433
             +R +I        +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF
Sbjct: 61  GPLREEIVNFNNRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYF 120
Query: 434 VCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSF 493
           +  G    V +   G ++    L   S FGE+S+L    +  +V+     RL  +   +F
Sbjct: 121 IQHGV---VSVLTKGNKEMK--LSDGSYFGEISLLTRGRRTASVRADTYSRLYSLSVDNF 175
Query: 494 TNIIDIY 500
             +++ Y
Sbjct: 176 NEVLEEY 182

>pdb|1Q3E|A Chain A, Hcn2j 443-645 In The Presence Of Cgmp Length = 207

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 6   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>pdb|3FFQ|A Chain A, Hcn2i 443-640 Apo-State Length = 202

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 6   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 124 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>pdb|2Q0A|A Chain A, Structure And Rearrangements In The Carboxy-Terminal Region Of Spih Channels Length = 200

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 4   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 63
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 64  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 121
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 122 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 178

>pdb|4HBN|A Chain A, Crystal Structure Of The Human Hcn4 Channel C-terminus Carrying The S672r Mutation Length = 205

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 3   SSRRQYQEKYKQVEQYMSFHKLPPDTRQRIHDYYEHRYQGKMFDEESILGELSEPLREEI 62
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 63  INFNCRKLVASMPLFANADPNFVTSMLTKLRFEVFQPGDYIIREGTIGKKMYFIQHGV-- 120
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++  + L   S FGE+ +L    +   V+    CRL  +   +F  +++ Y
Sbjct: 121 -VSVLTKGNKE--TKLADGSYFGEICLLTRGRRTARVRADTYCRLYSLSVDNFNEVLEEY 177

>pdb|3U10|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 87/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 9   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 68
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G   
Sbjct: 69  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGV-- 126
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 127 -VSVLTKGNKEMK--LSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183

>pdb|3U0Z|A Chain A, Tetramerization Dynamics Of The C-Terminus Underlies Isoform-Specific Camp-Gating In Hcn Channels Length = 210

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 40/180 (22%), Positives = 88/180 (48%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D+R +I  +   +Y+   + E ++L ++   +R +I
Sbjct: 9   SSRRQYQEKYKQVEQYMSFHKLPADMRQKIHDYYEHRYQGKIFDEENILSELNDPLREEI 68
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G V  ++YF+  G   
Sbjct: 69  VNFNCRKLVATMPLFANADPNFVTAMLSKLRFEVFQPGDYIIREGAVGKKMYFIQHGV-- 126
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
             G+    +++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 127 -AGVITKSSKEMK--LTDGSYFGEICLLTKGRRTASVRADTYCRLYSLSVDNFNEVLEEY 183

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
           G+K+L     G++ ++R+          ++  + +    ++ AA  G L  +E L++AGA
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           D N  D DG +PLHLAA  G+ EI+  L++ G D+N K
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
           G+K+L     G++ ++R+          ++  + +    ++ AA  G L  +E L++AGA
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           D N  D DG +PLHLAA  G+ EI+  L++ G D+N K
Sbjct: 60  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 97

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 3/98 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
           G+K+L     G++ ++R+          ++  + +    ++ AA  G L  +E L++AGA
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGA---DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           D N  D DG +PLHLAA  G+ EI+  L++ G D+N K
Sbjct: 72  DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK 109

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 44/65 (67%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           +EL  ++  AA +G+  +++ L+  GAD N +D DG++PLHLAA  G++E++  L+ +G 
Sbjct: 2   SELGKRLIEAAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA 61
Query: 597 DINLK 601
           D N K
Sbjct: 62  DPNAK 66

>pdb|1Q43|A Chain A, Hcn2i 443-640 In The Presence Of Camp, Selenomethionine Derivative Length = 207

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 83/180 (46%), Gaps = 6/180 (3%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS-YTEASVLQDIPISIRAKI 380
           S   ++++K   + +Y + ++L  D R +I  +   +Y+   + E S+L ++   +R +I
Sbjct: 6   SSRRQYQEKYKQVEQYXSFHKLPADFRQKIHDYYEHRYQGKXFDEDSILGELNGPLREEI 65
Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +   PLF      F+   + +L  E F PG+ I+ +G +  + YF+  G   
Sbjct: 66  VNFNCRKLVASXPLFANADPNFVTAXLTKLKFEVFQPGDYIIREGTIGKKXYFIQHGV-- 123
Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            V +   G ++    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 124 -VSVLTKGNKE--XKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AAY G L  +E L++ GAD N  D DG +PLHLAA  GY EI+  L++ G D+N
Sbjct: 87  AAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN 140

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/96 (35%), Positives = 55/96 (57%), Gaps = 3/96 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
           G+K+L     G++ ++R+  + +    + S H     L +  AAY G L  +E L++ GA
Sbjct: 15  GKKLLEAARAGQDDEVRI-LMANGADVNASDHVGWTPLHL--AAYFGHLEIVEVLLKNGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           D N  D  G +PLHLAA RG+ E++  L++ G D+N
Sbjct: 72  DVNADDSLGVTPLHLAADRGHLEVVEVLLKNGADVN 107

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 37/68 (54%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D+ G +PLHL  + G+ EI+  L++   
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 597 DINLKGNS 604
           D+N    S
Sbjct: 72  DVNASDKS 79

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+    +  +  L L    AA  G L  +E L++ G
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHL----AARVGHLEIVEVLLKNG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AD N  D+ G +PLHLAA RG+ EI+  L++ G D+N
Sbjct: 71  ADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVN 107

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           AA +G L  ++ L+ AGAD N  D +GR+PLHLAA  G+ E++  L++ G D+N K
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 55.8 bits (133), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           AA +G L  ++ L+ AGAD N  D +GR+PLHLAA  G+ E++  L++ G D+N K
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK 64

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 55.8 bits (133), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+  H  +    L L    AA+ G    +E L++ G
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHL----AAWIGHPEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AD N  D DG +PLHLAA  G+ EI+  L++ G D+N
Sbjct: 71  ADVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVN 107

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 33/98 (33%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
           G+K+L     G++ ++R+  + +    +   H     L + +A  H ++  +E L+R GA
Sbjct: 3   GKKLLEAARAGQDDEVRI-LMANGADANAYDHYGRTPLHMAAAVGHLEI--VEVLLRNGA 59
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           D N  D +G +PLHLAAS G+ EI+  L++ G D+N K
Sbjct: 60  DVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAK 97

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
           G+K+L     G++ ++R+  + +    + + ++    L +  AA +G L  +E L++ GA
Sbjct: 15  GKKLLEAARAGQDDEVRI-LMANGADVNATDNDGYTPLHL--AASNGHLEIVEVLLKNGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           D N +D  G +PLHLAA+ G+ EI+  L++ G D+N   N
Sbjct: 72  DVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDN 111

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 38/54 (70%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA+ G L  +E L++ GAD N  D +G +PLHLAA+RG+ EI+  L++ G D+N
Sbjct: 87  AAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN 140

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 39/65 (60%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D+ G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 597 DINLK 601
           D+N K
Sbjct: 72  DVNAK 76

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           +++AA +G   +++ L+  GAD N    DG +PLHLAA  G+ EI+  L+ KG D+N +
Sbjct: 13  LHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNAR 71

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A  ++ AA +G L  +E L++ GAD N  DY+G +PLHLAA  G+ EI+  L++ G D+N
Sbjct: 81  ATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVN 140

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+          L L    AA  G L  +E L++ G
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AD N +D  GR+PLHLAA+ G+ EI+  L++ G D+N
Sbjct: 71  ADVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 40/68 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L   GAD N  DY G +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 597 DINLKGNS 604
           D+N  GN+
Sbjct: 72  DVNATGNT 79

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+          L L    AA  G L  +E L++ G
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AD N +D  GR+PLHLAA+ G+ EI+  L++ G D+N
Sbjct: 71  ADVNASDSWGRTPLHLAATVGHLEIVEVLLEYGADVN 107

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 54/97 (55%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+  +  K    L L    AA +  L  +E L++ G
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNANDRKGNTPLHL----AADYDHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AD N  D DG +PLHLAA  G+ EI+  L++ G D+N
Sbjct: 71  ADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN 107

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 54/96 (56%), Gaps = 3/96 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
           G+K+L     G++ ++R+          ++  +A     ++ AA++G L  +E L++ GA
Sbjct: 15  GKKLLEAARAGRDDEVRILMANGA---DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           D N  D+ G +PL LAA  G+ EI+  L++ G D+N
Sbjct: 72  DVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN 107

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
           G+K+L     G++ ++R+          ++  +A     ++ AA +G L  +E L++ GA
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           D N  D  G +PLHLAA  G+ EI+  L++ G D+N
Sbjct: 72  DVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGADVN 107

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+          L L    AA  G L  +E L++ G
Sbjct: 15  GKKLLEATRAGQDDEVRILMANGADVNAMDDAGVTPLHL----AAKRGHLEIVEVLLKHG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AD N  D  GR+PLHLAA+ G+ EI+  L++ G D+N
Sbjct: 71  ADVNARDIWGRTPLHLAATVGHLEIVEVLLEYGADVN 107

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA +G L  +E L++ GAD N TD  G +PLHLAA  G+ EI+  L++ G D+N
Sbjct: 87  AALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN 140

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 53/96 (55%), Gaps = 3/96 (3%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGA 563
           G+K+L     G++ ++R+          ++  +A     ++ AA +G L  +E L++ GA
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGA---DVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 564 DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           D N  D  G +PLHLAA  G+ EI+  L++ G D+N
Sbjct: 72  DVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGADVN 107

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A  +GDL +++  +  G D NRT   GR PLH AA  G  EI+ FL+ KG DIN
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 67

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A  +GDL +++  +  G D NRT   GR PLH AA  G  EI+ FL+ KG DIN
Sbjct: 9   ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN 62

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/97 (34%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+          L L    AA +G L  +E L++ G
Sbjct: 7   GKKLLEAAAAGQDDEVRILMANGADVNATDDNGLTPLHL----AAANGQLEIVEVLLKNG 62
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AD N +D  G +PLHLAA  G+ EI+  L++ G D+N
Sbjct: 63  ADVNASDSAGITPLHLAAYDGHLEIVEVLLKHGADVN 99

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 40/67 (59%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD N  D DG +PLHLAA  G+ EI+  L++ G 
Sbjct: 12  SDLGKKLLEAARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 597 DINLKGN 603
           D+N + N
Sbjct: 72  DVNAEDN 78

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/54 (46%), Positives = 34/54 (62%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA  G L  +E L++ GAD N  D  G +PLHLAA  G+ EI+  L++ G D+N
Sbjct: 87  AAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVN 140

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 37/62 (59%)
Query: 538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           +L  K+  AA  G   ++  L+  GAD N  D DG +PLHLAA  G+ EI+  L++ G D
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD 60
Query: 598 IN 599
           +N
Sbjct: 61  VN 62

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 5/97 (5%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
           G+K+L     G++ ++R+     +D+    +K E  L   +  A  HG L  +E L++ G
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVN---AKDEYGLT-PLYLATAHGHLEIVEVLLKNG 70
Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AD N  D  G +PLHLAA  G+ EI   L++ G D+N
Sbjct: 71  ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN 107

>pdb|3UKN|A Chain A, Structure Of The C-LinkerCNBHD OF ZELK CHANNELS IN C 2 2 21 SPACE Group Length = 212

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/121 (23%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE--SSYTEASVLQDIPISIRAK 379
           S+   +  +  DL  +I  +RL + +  +++   +  +   +    + +L+D P  +RA 
Sbjct: 9   SRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRAD 68
Query: 380 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL 439
           I+  L    ++ +PLF+  S   +  + + +   F  PGE ++ +G+ +  +YFVC G +
Sbjct: 69  IAMHLNKELLQ-LPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSM 127
Query: 440 E 440
           E
Sbjct: 128 E 128

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           + H  E  L +  A+  GD+  +E L++ G+DPN  D+ G +PLH A + G+ +++  L+
Sbjct: 6   TNHRGETLLHI--ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
Query: 593 QKGVDINLKG 602
           Q    +N  G
Sbjct: 64  QHKALVNTTG 73

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           A+ A+ ++ A   G    ++ L+ + A PN+ D  G +PL  A S G+ E++  L+Q G 
Sbjct: 117 ADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGA 176
Query: 597 DINL---KGNSIMQ 607
            IN    KGN+ + 
Sbjct: 177 SINASNNKGNTALH 190

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 46.2 bits (108), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
Query: 546 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           AA +G     E L+RAG   + RT  D R+PLH+AAS G+  I+  L++ G D+N K
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDARTKVD-RTPLHMAASEGHANIVEVLLKHGADVNAK 96

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/98 (31%), Positives = 54/98 (55%), Gaps = 7/98 (7%)
Query: 504 GRKVLTNLLQGKESDLRLKQLQ-SDITFHISKHEAELALK-VNSAAYHGDLYQLEGLIRA 561
           G+K+L     G++ ++R+     +D+       E ++ L  ++ AA +  L  +E L++ 
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVN-----AEDKVGLTPLHLAAMNDHLEIVEVLLKN 69
Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           GAD N  D  G +PLHL A  G+ EI+  L++ G D+N
Sbjct: 70  GADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN 107

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD    D +G +PLHLAA  G+ E++  L++ G 
Sbjct: 4   SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 597 DIN 599
           D+N
Sbjct: 64  DVN 66

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA HG +  +E L++ GADP        S L LA S+GY +I+  L+  GVD+N
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 96

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA HG +  +E L++ GADP        S L LA S+GY +I+  L+  GVD+N
Sbjct: 59  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 112

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA HG +  +E L++ GADP        S L LA S+GY +I+  L+  GVD+N
Sbjct: 41  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN 94

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 541 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           L V + AY G L +L E ++   +   RTD D R+ LH A S G+ EI+ FL+Q GV +N
Sbjct: 8   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67
Query: 600 LKGNS 604
            K ++
Sbjct: 68  DKDDA 72

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 541 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           L V + AY G L +L E ++   +   RTD D R+ LH A S G+ EI+ FL+Q GV +N
Sbjct: 9   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 68
Query: 600 LKGNS 604
            K ++
Sbjct: 69  DKDDA 73

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 528 ITFHISKHE--AELALKVNSAAYH-----GDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580
           + ++ISK     +L   +NS   H     G L  +  L++ GADP+  D +G S +HLAA
Sbjct: 58  VKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAA 117
Query: 581 SRGYEEIMTFLIQKGVDINL 600
             G+  I+ +LI KG D+++
Sbjct: 118 QFGHTSIVAYLIAKGQDVDM 137

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 547 AYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           AY G L +L+  I A      RTD D R+ LH A S G+ EI+ FL+Q GV +N K ++
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/59 (44%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 547 AYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           AY G L +L+  I A      RTD D R+ LH A S G+ EI+ FL+Q GV +N K ++
Sbjct: 14  AYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

>pdb|3R6S|A Chain A, Crystal Structure Of Glxr Transcription Factor From Corynebacterium Glutamicum With Camp Length = 247

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/93 (26%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + +  +F+G     +N ++  +    F  G  I ++G   D+LY +  GK++      +G
Sbjct: 28  LSRAGIFQGVDPTAVNNLIQDMETVRFPRGATIFDEGEPGDRLYIITSGKVKLARHAPDG 87
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQ-VC 480
            E+ ++ + P+  FGE+SI    P P T   VC
Sbjct: 88  RENLLTIMGPSDMFGELSIFD--PGPRTSSAVC 118

>pdb|3D0S|A Chain A, Camp Receptor Protein From M.Tuberculosis, Camp-Free Form Length = 227

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  GK++      +G
Sbjct: 8   LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 67
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
            E+ ++ + P+  FGE+SI    P+  +       R + +D+ +  + I
Sbjct: 68  RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 116

>pdb|2QVS|B Chain B, Crystal Structure Of Type Iia Holoenzyme Of Camp-Dependent Protein Kinase Length = 310

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/121 (24%), Positives = 58/121 (47%), Gaps = 7/121 (5%)
Query: 384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL---- 439
           ++  +IE VPLFK        +IV  + E+ +  GE I+ +G   D  Y +  G++    
Sbjct: 157 MFESFIESVPLFKSLEMSERMKIVDVIGEKIYKDGERIIAQGEKADSFYIIESGEVSILI 216
Query: 440 -EEVGIEENG--TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNI 496
             +    +NG   E  +++ H    FGE++++ N P+  +       + L +D Q+F  +
Sbjct: 217 RSKTKSNKNGGNQEVEIAHCHKGQYFGELALVTNKPRAASAYGVGDVKCLVMDVQAFERL 276
Query: 497 I 497
           +
Sbjct: 277 L 277

>pdb|3MZH|A Chain A, Crystal Structure Of Camp Receptor Protein From Mycobacterium Tuberculosis In Complex With Camp And Its Dna Binding Element Length = 225

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  GK++      +G
Sbjct: 6   LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 65
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
            E+ ++ + P+  FGE+SI    P+  +       R + +D+ +  + I
Sbjct: 66  RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 114

>pdb|3I54|A Chain A, Crystal Structure Of Mtbcrp In Complex With Camp Length = 249

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  GK++      +G
Sbjct: 30  LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 89
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
            E+ ++ + P+  FGE+SI    P+  +       R + +D+ +  + I
Sbjct: 90  RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 138

>pdb|3H3U|A Chain A, Crystal Structure Of Crp (Camp Receptor Protein) From Mycoba Tuberculosis Length = 224

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 50/109 (45%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  GK++      +G
Sbjct: 5   LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 64
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
            E+ ++ + P+  FGE+SI    P+  +       R + +D+ +  + I
Sbjct: 65  RENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 113

>pdb|3IDB|B Chain B, Crystal Structure Of (108-268)riib:c Holoenzyme Of Camp- Dependent Protein Kinase Length = 161

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G    V
Sbjct: 45  LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 103
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                  SFGE++++ N P+  T+       L  +D+ +F  II
Sbjct: 104 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 147

>pdb|3IDC|B Chain B, Crystal Structure Of (102-265)riib:c Holoenzyme Of Camp- Dependent Protein Kinase Length = 164

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G    V
Sbjct: 51  LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 109
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                  SFGE++++ N P+  T+       L  +D+ +F  II
Sbjct: 110 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 153

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
           A++ G L  ++ L++ GA PN ++    +PLH+AA  G+ E+  +L+Q    +N K 
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKA 77

>pdb|3OF1|A Chain A, Crystal Structure Of Bcy1, The Yeast Regulatory Subunit Of Pka Length = 246

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 405 QIVIRLHEEFFLP-GEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY------VSYLH 457
           ++VI   EE  +P G  I+++G+  D  Y V           E GT D+      V+   
Sbjct: 24  RLVINCLEEKSVPKGATIIKQGDQGDYFYVV-----------EKGTVDFYVNDNKVNSSG 72
Query: 458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
           P SSFGE++++ N P+  TV     C L  +D+ +F  I+
Sbjct: 73  PGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKIL 112

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV 596
           ++L  K+  AA  G   ++  L+  GAD    D +G +PLHLAA  G+ E++  L++ G 
Sbjct: 22  SDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 81
Query: 597 DI 598
           D+
Sbjct: 82  DV 83

>pdb|3TNP|B Chain B, Structure And Allostery Of The Pka Riib Tetrameric Holoenzyme Length = 416

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G    V
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 210
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                  SFGE++++ N P+  T+       L  +D+ +F  II
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRII 254

>pdb|3TNQ|A Chain A, Structure And Allostery Of The Pka Riib Tetrameric Holoenzyme Length = 416

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G    V
Sbjct: 152 LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 210
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                  SFGE++++ N P+  T+       L  +D+ +F  II
Sbjct: 211 GNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRII 254

>pdb|3I59|A Chain A, Crystal Structure Of Mtbcrp In Complex With N6-Camp Length = 249

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 24/109 (22%), Positives = 49/109 (44%)
Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  GK++      +G
Sbjct: 30  LARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDG 89
Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
            E+ ++   P+  FGE+SI    P+  +       R + +D+ +  + I
Sbjct: 90  RENLLTIXGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWI 138

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           L++ GA PN  D  G SP+H AA  G+ + +  L++ G D+N+
Sbjct: 54  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 96

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           L++ GA PN  D  G SP+H AA  G+ + +  L++ G D+N+
Sbjct: 60  LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV 102

>pdb|1CX4|A Chain A, Crystal Structure Of A Deletion Mutant Of The Type Ii Beta Regulatory Subunit Of Camp-Dependent Protein Kinase Length = 305

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 52/104 (50%), Gaps = 1/104 (0%)
Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G    V
Sbjct: 41  LFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDGVGRCV 99
Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                  SFGE++++ N P+  T+       L  +D+ +F  II
Sbjct: 100 GNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRII 143

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           L++ GA PN  D  G SP+H AA  G+ + +  L++ G D+N
Sbjct: 62  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 103

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           L++ GA PN  D  G SP+H AA  G+ + +  L++ G D+N
Sbjct: 60  LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVN 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	608
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	5e-49
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	2e-47
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	2e-44
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	3e-40
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	1e-27
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	2e-23
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	4e-20
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	4e-20
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	1e-19
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	5e-19
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	2e-18
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	3e-18
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	3e-18
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	4e-18
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	3e-15
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	8e-18
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	2e-17
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	9e-18
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	4e-15
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	1e-17
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-17
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	1e-13
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	6e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	2e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-07
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-07
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	1e-16
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	3e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-15
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-12
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	6e-10
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-15
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-13
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-07
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-16
3v30_A	172	DNA-binding protein rfxank; structural genomics co	1e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-04
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	7e-16
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	8e-16
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-15
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-14
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	5e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-13
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-10
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-07
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	6e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-05
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-05
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-15
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-08
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-15
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	7e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-14
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-15
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-09
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-04
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-15
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	7e-14
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-09
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	7e-15
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	7e-15
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	7e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	8e-15
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-11
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-15
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	9e-15
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-15
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	7e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-05
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-10
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	8e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-14
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-11
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-09
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-07
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-13
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-14
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-12
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	1e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-06
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-05
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	2e-14
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	2e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-14
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-12
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-14
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-08
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-14
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	5e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-09
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-14
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-12
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	8e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	6e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	3e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-13
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-10
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	3e-10
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	7e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	1e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-08
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-05
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	8e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-07
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-13
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	4e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	7e-13
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	5e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-14
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-13
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	9e-08
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-14
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	4e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-13
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-09
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-06
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	8e-14
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	4e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-06
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-14
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-13
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	9e-11
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-09
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-13
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	8e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-13
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-11
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-07
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-07
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	4e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	5e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	1e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-12
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-09
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	9e-08
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	8e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-12
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-10
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-06
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	1e-12
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	2e-12
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	2e-12
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	4e-12
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	2e-11
2rfa_A	232	Transient receptor potential cation channel subfa	9e-11
2rfa_A	232	Transient receptor potential cation channel subfa	1e-10
2rfa_A	232	Transient receptor potential cation channel subfa	4e-10
2rfa_A	232	Transient receptor potential cation channel subfa	7e-10
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	9e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-05
2etb_A	256	Transient receptor potential cation channel subfam	9e-11
2etb_A	256	Transient receptor potential cation channel subfam	2e-09
2etb_A	256	Transient receptor potential cation channel subfam	7e-09
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	5e-04
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	1e-10
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	1e-10
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	3e-10
2pnn_A	273	Transient receptor potential cation channel subfa	9e-10
2pnn_A	273	Transient receptor potential cation channel subfa	2e-09
2pnn_A	273	Transient receptor potential cation channel subfa	9e-09
2pnn_A	273	Transient receptor potential cation channel subfa	8e-06
2pnn_A	273	Transient receptor potential cation channel subfa	4e-05
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	1e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	3e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-08
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-05
3jxi_A	260	Vanilloid receptor-related osmotically activated p	9e-04
1lnq_A	336	MTHK channels, potassium channel related protein;	3e-09
1ft9_A	222	Carbon monoxide oxidation system transcription reg	5e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	9e-05
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-08
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	4e-04
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	3e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	6e-08
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	3e-06
3ouf_A	97	Potassium channel protein; ION channel, membrane,	1e-07
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	1e-07
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-07
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	8e-07
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	2e-07
2q67_A	114	Potassium channel protein; inverted teepee, helix	2e-07
1xl4_A	301	Inward rectifier potassium channel; integral membr	6e-07
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	7e-07
2byv_E	999	RAP guanine nucleotide exchange factor 4; EPAC2, C	3e-06
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	4e-06
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	1e-05
3b02_A	195	Transcriptional regulator, CRP family; structural	2e-05
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	4e-05
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-05
3sya_A	340	G protein-activated inward rectifier potassium CH;	8e-05
2a9h_A	155	Voltage-gated potassium channel; potassium channel	1e-04
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	1e-04
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	3e-04
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	4e-04
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	8e-04

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198

 Score =  168 bits (427), Expect = 5e-49
 Identities = 44/214 (20%), Positives = 98/214 (45%), Gaps = 17/214 (7%)

Query: 312 GNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYT-EASVLQ 370
           G M       S + ++R+K+  + +Y+   +L   +R++I+ +   +Y      E  + +
Sbjct: 1   GAMD------SSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFR 54

Query: 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQ 430
           ++  SIR  ++       +  VP F G  S F+ ++V  L  E F P + ++++G   D+
Sbjct: 55  EVSESIRQDVANYNCRDLVASVPFFVGADSNFVTRVVTLLEFEVFQPADYVIQEGTFGDR 114

Query: 431 LYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490
           ++F+  G ++ +    +G     + L   S FGE+ +L    +  +V+    C L  +  
Sbjct: 115 MFFIQQGIVDIIM--SDGVI--ATSLSDGSYFGEICLLTRERRVASVKCETYCTLFSLSV 170

Query: 491 QSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQL 524
           Q F  ++D +    + +       + +  RL ++
Sbjct: 171 QHFNQVLDEFPAMRKTME------EIAVRRLTRI 198

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202

 Score =  164 bits (417), Expect = 2e-47
 Identities = 40/180 (22%), Positives = 84/180 (46%), Gaps = 6/180 (3%)

Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYT-EASVLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+     E S+L ++   +R KI
Sbjct: 6   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKI 65

Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G + 
Sbjct: 66  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVS 125

Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            +        +    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 126 VL-----TKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 180

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212

 Score =  156 bits (396), Expect = 2e-44
 Identities = 40/215 (18%), Positives = 88/215 (40%), Gaps = 16/215 (7%)

Query: 310 LIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS--YTEAS 367
           +   M       S+   +  +  DL  +I  +RL + +  +++   +  +  +     + 
Sbjct: 3   MDQRMY------SRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSE 56

Query: 368 VLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNV 427
           +L+D P  +RA I+  L    + ++PLF+  S   +  + + +   F  PGE ++ +G+ 
Sbjct: 57  LLKDFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDA 115

Query: 428 VDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYT--VQVCELCRL 485
           +  +YFVC G +E +          ++ L      G  S+           V+    C L
Sbjct: 116 LQAIYFVCSGSMEVL-----KDNTVLAILGKGDLIGSDSLTKEQVIKTNANVKALTYCDL 170

Query: 486 LRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLR 520
             I  +    ++ +Y    +K ++ +      +LR
Sbjct: 171 QYISLKGLREVLRLYPEYAQKFVSEIQHDLTYNLR 205

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160

 Score =  143 bits (362), Expect = 3e-40
 Identities = 36/153 (23%), Positives = 58/153 (37%), Gaps = 7/153 (4%)

Query: 362 SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVI 421
           S+    VLQ  P  +RA I   L     ++ P F+  S   +  + +        PG++I
Sbjct: 2   SHMTEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLI 61

Query: 422 MEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC--NIPQPYTVQV 479
              G  VD L FV  G LE +       ++ V+ L     FG+V             V+ 
Sbjct: 62  YHAGESVDSLCFVVSGSLEVI-----QDDEVVAILGKGDVFGDVFWKEATLAQSCANVRA 116

Query: 480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512
              C L  I + +   +++ Y         NL+
Sbjct: 117 LTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLI 149

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Length = 161

 Score =  107 bits (270), Expect = 1e-27
 Identities = 28/123 (22%), Positives = 58/123 (47%), Gaps = 1/123 (0%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
            + + LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  + + ++ +G
Sbjct: 40  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFD-IYVKCDG 98

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
               V       SFGE++++ N P+  T+       L  +D+ +F  II       RK+ 
Sbjct: 99  VGRCVGNYDNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 158

Query: 509 TNL 511
            + 
Sbjct: 159 ESF 161

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137

 Score = 95.6 bits (238), Expect = 2e-23
 Identities = 20/122 (16%), Positives = 41/122 (33%), Gaps = 10/122 (8%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVG-IEEN 447
           + +VPLF+      ++ I  RL    F     ++ +G+ V+++ F+  G+LE V      
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQP---------YTVQVCELCRLLRIDKQSFTNIID 498
                 S L      G+  +   +             TV+         +       +  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 499 IY 500
            +
Sbjct: 128 QF 129

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187

 Score = 87.5 bits (217), Expect = 4e-20
 Identities = 24/158 (15%), Positives = 57/158 (36%)

Query: 356 RLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFF 415
              +  +     +  D+     A       L  + K+ LF   S+E +  +   +     
Sbjct: 8   HHHHHENLYFQGMYPDLVHLGGADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAA 67

Query: 416 LPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPY 475
                ++ +G+  D L  +  G++  +    N     ++ +   +  GE+S++  +P+  
Sbjct: 68  PRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVGAGAIIGEMSMIDGMPRSA 127

Query: 476 TVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513
           +           + + +   ++      G KVL  LLQ
Sbjct: 128 SCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQ 165

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138

 Score = 85.8 bits (213), Expect = 4e-20
 Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           +  VPLF+      + +IV  L       G VI   G   D+++FV  G +  V      
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSV-SVATPNPV 71

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
                  L P + FGE++++   P+  TV       LL +    F  +            
Sbjct: 72  E------LGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125

Query: 509 TNLLQGKESDLRLKQLQS 526
              L+      R     S
Sbjct: 126 KTALE------RRGAAAS 137

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Length = 149

 Score = 85.0 bits (211), Expect = 1e-19
 Identities = 27/154 (17%), Positives = 61/154 (39%), Gaps = 14/154 (9%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + + PLF     E   ++   + E     G+ +  +G+  D+LY V  GK++      +G
Sbjct: 7   LRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDG 66

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            E+ ++ + P+   GE+S+    P+  T       +LL +        +++       +L
Sbjct: 67  RENMLAVVGPSELIGELSLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALL 126

Query: 509 TNLLQGKESDLRLKQLQSDITFHISKHEAELALK 542
             + +      RL++    +        ++L   
Sbjct: 127 RAVAR------RLRKTNDAM--------SDLVFS 146

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139

 Score = 82.7 bits (205), Expect = 5e-19
 Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 5/128 (3%)

Query: 371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQ 430
            +P   ++  S+ L    I      K      I +IV  ++   +     I+++G+V   
Sbjct: 7   TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSL 66

Query: 431 LYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDK 490
           +Y +  GK+E   + + G +  +  + P   FGE++IL N  +  TV+     +L  ID+
Sbjct: 67  VYVMEDGKVE---VTKEGVK--LCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDR 121

Query: 491 QSFTNIID 498
           Q F  I+ 
Sbjct: 122 QCFQTIMM 129

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Length = 154

 Score = 81.6 bits (202), Expect = 2e-18
 Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 15/155 (9%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           ++   LF+  S   + +++          G  +  +G      Y++  G ++   +   G
Sbjct: 14  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 73

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
            E  +   +  ++F E  +  + P    T Q     +L R   +++   +         +
Sbjct: 74  QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 133

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAELALK 542
           L  L        RL Q   +I          L+LK
Sbjct: 134 LAKLST------RLHQRIDEI--------ETLSLK 154

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142

 Score = 80.8 bits (200), Expect = 3e-18
 Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 3/131 (2%)

Query: 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE---EV 442
              +     F   + E +  I +   E+ F  G VI ++ +  D L  +  G +E     
Sbjct: 5   PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSN 64

Query: 443 GIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFC 502
           G   +     V  + P + FG  S++       + +  +  R++ I+      + +    
Sbjct: 65  GGAGSAANSTVCSVVPGAIFGVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQA 124

Query: 503 DGRKVLTNLLQ 513
            G+ ++ N+  
Sbjct: 125 LGQVLMNNVAA 135

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Length = 154

 Score = 80.9 bits (200), Expect = 3e-18
 Identities = 26/109 (23%), Positives = 52/109 (47%), Gaps = 5/109 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           IEK  LF        + I   +    F+ GE ++++G+  D  Y +  G++ +V +    
Sbjct: 40  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEM-DVYVNNE- 97

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
              + + +    SFGE++++   P+  TV+     +L  ID+ S+  I+
Sbjct: 98  ---WATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 143

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 82.9 bits (205), Expect = 4e-18
 Identities = 24/113 (21%), Positives = 56/113 (49%), Gaps = 4/113 (3%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI 444
           Y   ++ +P+ K  ++    ++   L  + + PGE I+ +G+  +  Y +  G    V +
Sbjct: 123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYG---AVDV 179

Query: 445 EENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
            + G +  ++ L  +  FGEV++L ++P+  TV   +  ++  + K  F  ++
Sbjct: 180 SKKG-QGVINKLKDHDYFGEVALLNDLPRQATVTATKRTKVATLGKSGFQRLL 231

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246

 Score = 74.9 bits (184), Expect = 3e-15
 Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 5/124 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           I    LF    S+    ++  L E+    G  I+++G+  D  Y V  G ++      N 
Sbjct: 9   IRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVD---FYVND 65

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            +  V+   P SSFGE++++ N P+  TV     C L  +D+ +F  I+       R + 
Sbjct: 66  NK--VNSSGPGSSFGELALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMY 123

Query: 509 TNLL 512
            +LL
Sbjct: 124 DDLL 127

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 85.2 bits (210), Expect = 8e-18
 Identities = 28/124 (22%), Positives = 59/124 (47%), Gaps = 1/124 (0%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
            + + LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G   ++ ++ +G
Sbjct: 147 CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGT-FDIYVKCDG 205

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
               V       SFGE++++ N P+  T+       L  +D+ +F  II       RK+ 
Sbjct: 206 VGRCVGNYDNRGSFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY 265

Query: 509 TNLL 512
            + +
Sbjct: 266 ESFI 269

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416

 Score = 83.6 bits (206), Expect = 2e-17
 Identities = 23/119 (19%), Positives = 51/119 (42%), Gaps = 6/119 (5%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE---- 440
           Y  +IE +P  K        ++V  +  + +  GE I+ +G++ D  + V  G+++    
Sbjct: 265 YESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMK 324

Query: 441 --EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                  E      ++       FGE++++ N P+  +       + L +D Q+F  ++
Sbjct: 325 RKGKSEVEENGAVEIARCFRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLL 383

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 83.4 bits (206), Expect = 9e-18
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE-EVG 443
           Y+ +++ VP F+    E ++++   L E  +  GE I+ +G   D  + +  GK+     
Sbjct: 155 YMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTRE 214

Query: 444 IEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
              N    ++  L     FGE ++     +   V   E    L ID+ SF ++I
Sbjct: 215 DSPNEDPVFLRTLGKGDWFGEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLI 268

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299

 Score = 75.7 bits (186), Expect = 4e-15
 Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 5/125 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           I      K      I +IV  ++   +     I+++G+V   +Y +  GK+E   + + G
Sbjct: 41  ILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVE---VTKEG 97

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            +  +  + P   FGE++IL N  +  TV+     +L  ID+Q F  I+           
Sbjct: 98  VK--LCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEY 155

Query: 509 TNLLQ 513
              L+
Sbjct: 156 MEFLK 160

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Length = 355

 Score = 84.1 bits (208), Expect = 1e-17
 Identities = 60/395 (15%), Positives = 106/395 (26%), Gaps = 104/395 (26%)

Query: 105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF-IIDLFSCMPWD 163
           L  L  V   A+L  +               L+ +R    +   R+    ID+ + +   
Sbjct: 41  LAALLAVIWGAYLLQLAA------------TLLKRRAG--VVRDRTPKIAIDVLAVLVPL 86

Query: 164 LIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIA 223
             +   G               + K  +             +  R++   A  L      
Sbjct: 87  AAFLLDG----SPDWSLYCAVWLLKPLRDSTFFP-------VLGRVLANEARNLIGVTTL 135

Query: 224 ACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYG 283
             +  +         E                D +   F  S   +M+ +VVT++T GYG
Sbjct: 136 FGVVLFAVALAAYVIER---------------DIQPEKF-GSIPQAMWWAVVTLSTTGYG 179

Query: 284 DVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRL 343
           D    +    V         M+ G  + G    ++  G              + + R   
Sbjct: 180 DTIPQSFAGRVL----AGAVMMSGIGIFGLWAGILATG------------FYQEVRRGD- 222

Query: 344 GRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFI 403
                                                        +  VPLF+      +
Sbjct: 223 --------------------------------------FVRNWQLVAAVPLFQKLGPAVL 244

Query: 404 NQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463
            +IV  L       G VI   G   D+++FV  G +                L P + FG
Sbjct: 245 VEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPNPV-------ELGPGAFFG 297

Query: 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIID 498
           E++++   P+  TV       LL +    F  +  
Sbjct: 298 EMALISGEPRSATVSAATTVSLLSLHSADFQMLCS 332

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 82.8 bits (204), Expect = 1e-17
 Identities = 25/114 (21%), Positives = 48/114 (42%), Gaps = 1/114 (0%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE-EVG 443
           Y  ++ KV + +         +   L    F  G+ I+ +G   D+ + +  G       
Sbjct: 155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQR 214

Query: 444 IEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
             EN     V  L P+  FGE+++L N P+  TV      + +++D+  F  ++
Sbjct: 215 RSENEEFVEVGRLGPSDYFGEIALLMNRPKAATVVARGPLKCVKLDRPRFERVL 268

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291

 Score = 70.8 bits (173), Expect = 1e-13
 Identities = 29/125 (23%), Positives = 57/125 (45%), Gaps = 5/125 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           IEK  LF        + I   +    F+ GE ++++G+  D  Y +  G++ +V +    
Sbjct: 41  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEM-DVYVN--- 96

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
             ++ + +    SFGE++++   P+  TV+     +L  ID+ S+  I+       RK+ 
Sbjct: 97  -NEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMY 155

Query: 509 TNLLQ 513
              L 
Sbjct: 156 EEFLS 160

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Length = 134

 Score = 76.6 bits (189), Expect = 6e-17
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 7/112 (6%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEE-FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE 446
           ++ ++P F   +     ++   +  E     G +I+E G  +D  Y +  G    V I  
Sbjct: 17  FMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNG---TVEISH 73

Query: 447 NGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNII 497
              +  V  L   +SFG    L        V+     C+ + I +Q +  I+
Sbjct: 74  PDGK--VENLFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRIL 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 75.9 bits (188), Expect = 7e-17
 Identities = 26/58 (44%), Positives = 33/58 (56%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  +GDL +++  +  G D NRT   GR PLH AA  G  EI+ FL+ KG DIN    
Sbjct: 14  ALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 71

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 69.0 bits (170), Expect = 2e-14
 Identities = 22/58 (37%), Positives = 28/58 (48%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G L  LE L+  GAD N  D    +PL  A   G+   +  L+ KG D  +KG 
Sbjct: 47  AADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP 104

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 49.3 bits (119), Expect = 1e-07
 Identities = 10/43 (23%), Positives = 19/43 (44%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 587
           SA Y G +  ++ L+  GAD      DG +      ++  + +
Sbjct: 79  SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL 121

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 48.5 bits (117), Expect = 3e-07
 Identities = 6/37 (16%), Positives = 10/37 (27%)

Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
                       A   G  + +   + KG D+N    
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLE 38

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 81.3 bits (200), Expect = 1e-16
 Identities = 26/117 (22%), Positives = 48/117 (41%), Gaps = 1/117 (0%)

Query: 382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE- 440
           + +Y  ++ KV + +         +   L    F  GE I+ +G   D  Y +  G    
Sbjct: 243 RKMYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASV 302

Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
                 N     V  L P+  FGE+++L N P+  TV      + +++D+  F  ++
Sbjct: 303 LQRRSPNEEYVEVGRLGPSDYFGEIALLLNRPRAATVVARGPLKCVKLDRPRFERVL 359

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381

 Score = 70.5 bits (172), Expect = 3e-13
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 6/152 (3%)

Query: 362 SYTEASVLQDIPISIRAKISQT-LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEV 420
            YTE   +  +   I             I K  LF        + I   +     + GE 
Sbjct: 104 VYTEEDAVSYVRKVIPKDYKTMTALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGET 163

Query: 421 IMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC 480
           ++++GN  D  Y V  G++ +V +      ++V+ +    SFGE++++   P+  TV+  
Sbjct: 164 VIQQGNEGDNFYVVDQGEV-DVYVN----GEWVTNISEGGSFGELALIYGTPRAATVKAK 218

Query: 481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL 512
              +L  ID+ S+  I+       RK+    L
Sbjct: 219 TDLKLWGIDRDSYRRILMGSTLRKRKMYEEFL 250

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 75.9 bits (188), Expect = 1e-16
 Identities = 20/58 (34%), Positives = 35/58 (60%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A+  GD+  +E L++ G+DPN  D+ G +PLH A + G+ +++  L+Q    +N  G 
Sbjct: 17  ASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGY 74

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 72.5 bits (179), Expect = 2e-15
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  HG L  +E L++  A  N T Y   SPLH AA  G+ +I+  L+  G   N    
Sbjct: 50  ACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 63.6 bits (156), Expect = 3e-12
 Identities = 15/42 (35%), Positives = 26/42 (61%), Gaps = 1/42 (2%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           G DP  T++ G + LH+A+ +G    + +L+Q G D N+K +
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDH 41

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 56.7 bits (138), Expect = 6e-10
 Identities = 9/50 (18%), Positives = 20/50 (40%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
           AA +G +  ++ L+  GA  N  +  G  P+        + ++    +  
Sbjct: 83  AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 75.9 bits (188), Expect = 3e-16
 Identities = 20/58 (34%), Positives = 28/58 (48%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            A  G++  L   I      N TD +G +PL  AA+ G   ++ FL+Q G D  L G 
Sbjct: 10  LAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGK 67

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 73.2 bits (181), Expect = 2e-15
 Identities = 23/58 (39%), Positives = 32/58 (55%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA HG +  +E L++ GADP        S L LA S+GY +I+  L+  GVD+N    
Sbjct: 43  AAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW 100

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 71.3 bits (176), Expect = 1e-14
 Identities = 14/58 (24%), Positives = 28/58 (48%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A   G    ++ L+  G D N  D++G +PL  A    + + +  L++ G D  ++ +
Sbjct: 76  ACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 133

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 11/58 (18%), Positives = 24/58 (41%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A +   +  ++ L+ +GADP      G + + LA + GY  +   +    + +     
Sbjct: 109 AVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 49.3 bits (119), Expect = 4e-07
 Identities = 6/33 (18%), Positives = 12/33 (36%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
                +H  A++G    +   I++   IN    
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE 34

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 75.9 bits (188), Expect = 3e-16
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A+  G++  +  L+  GADP+    +  S L LA++ GY +I+  L+++ VDIN+   
Sbjct: 43  ASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDW 100

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 71.3 bits (176), Expect = 1e-14
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            A  G+L QL+  +R G +  N+ D  G +PL  A++ G  E + FL++ G D ++   
Sbjct: 9   LAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAK 67

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.1 bits (173), Expect = 3e-14
 Identities = 13/58 (22%), Positives = 27/58 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A+  G    +  L+    D N  D++G +PL  A    + + +  L+ +G D+  + +
Sbjct: 76  ASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD 133

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 70.1 bits (173), Expect = 3e-14
 Identities = 12/58 (20%), Positives = 23/58 (39%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A     +  +E L+  GAD       G +P+ LA + GY ++   +    + +     
Sbjct: 109 AVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 6/33 (18%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 572 GRSPLHLAASRGYEEIMTFLIQKGVD-INLKGN 603
               +H  A++G  + +   ++KG + +N    
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE 34

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Length = 231

 Score = 76.1 bits (188), Expect = 7e-16
 Identities = 27/174 (15%), Positives = 66/174 (37%), Gaps = 16/174 (9%)

Query: 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE 445
           L  +++ PLF+    + + + +  + E  F P E+++E+    + L+ V  G +    + 
Sbjct: 5   LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVS 64

Query: 446 ENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 505
             G E  +  ++     GE ++L +  +  +V+     R L + ++ F  I+  +     
Sbjct: 65  LGGRERVLGDIYAPGVVGETAVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLW 124

Query: 506 KVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNS--AAYHGDLYQLEG 557
            +   L +      R+  L  ++                +       +LY+   
Sbjct: 125 NLAEMLAR------RVTFLNDEL--------IAFGQNTEAALTHVFANLYRQRL 164

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Length = 227

 Score = 76.1 bits (188), Expect = 8e-16
 Identities = 28/142 (19%), Positives = 62/142 (43%), Gaps = 6/142 (4%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            + +  +F+G     I  +  +L    F  G  +  +G   D+LY +  GK++      +
Sbjct: 7   ILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPD 66

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
           G E+ ++ + P+  FGE+SI    P+  +       R + +D+ +  + I        ++
Sbjct: 67  GRENLLTIMGPSDMFGELSIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQL 126

Query: 508 LTNLLQGKESDLRLKQLQSDIT 529
           L  L +      RL++  +++ 
Sbjct: 127 LRVLAR------RLRRTNNNLA 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.4 bits (186), Expect = 1e-15
 Identities = 16/58 (27%), Positives = 30/58 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G+L  ++  ++   DP++ + +G + LH A       I+ FLI  G ++N   +
Sbjct: 28  AALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDS 85

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 21/59 (35%), Positives = 27/59 (45%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           A    +   ++ LI AGA+ N  D  G +PLH AAS     I   L+Q G  I     S
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLS 119

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 546 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAAS--RGYEEIMTFLIQKGVDINLKG 602
           AA   D      L++ GA     T  DG +          GY +  T+L      + L  
Sbjct: 94  AASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMN 153

Query: 603 N 603
           +
Sbjct: 154 S 154

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 8/51 (15%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 556 EGLIRAGADPNRTD---YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
             ++R    P +      +    L  AA  G  E++   +++  D +    
Sbjct: 2   RSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNE 52

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 47.3 bits (113), Expect = 5e-06
 Identities = 7/64 (10%), Positives = 16/64 (25%), Gaps = 1/64 (1%)

Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A +       G       L          +      L   ++   +E+  F   + V + 
Sbjct: 124 AFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELS-FREGESVTVL 182

Query: 600 LKGN 603
            +  
Sbjct: 183 RRDG 186

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 3/48 (6%)

Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 587
           AL   SA +  +L   EG         R D    +    AA  G E  
Sbjct: 159 ALWDYSAEFGDELSFREG---ESVTVLRRDGPEETDWWWAALHGQEGY 203

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Length = 216

 Score = 74.6 bits (184), Expect = 2e-15
 Identities = 29/141 (20%), Positives = 58/141 (41%), Gaps = 6/141 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           ++  PLF G + E ++  +       +  G+ I  +G++   LY V  GK+        G
Sbjct: 1   MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGG 60

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
            E  ++ L P   FGE+S+L    +  +    E   LL + ++ +  +I         + 
Sbjct: 61  QERTLALLGPGELFGEMSLLDEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLA 120

Query: 509 TNLLQGKESDLRLKQLQSDIT 529
             L +      RL++   ++ 
Sbjct: 121 ALLAR------RLREADLELD 135

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 76.4 bits (189), Expect = 2e-15
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 4/78 (5%)

Query: 528 ITFHISKHEAEL--ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE 585
           +   +++   ++  A K        D  Q   L     +  R    G + LH+AA++GY 
Sbjct: 155 LQNEVNRQGVDIEAARKEEERIMLRDARQW--LNSGHINDVRHAKSGGTALHVAAAKGYT 212

Query: 586 EIMTFLIQKGVDINLKGN 603
           E++  LIQ   D+N+K  
Sbjct: 213 EVLKLLIQARYDVNIKDY 230

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.5 bits (179), Expect = 3e-14
 Identities = 19/58 (32%), Positives = 30/58 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A   GD  ++  L+  GAD N  + DG + LH A      +++ FL++ G +IN   N
Sbjct: 47  ACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.1 bits (178), Expect = 5e-14
 Identities = 19/58 (32%), Positives = 32/58 (55%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A    ++  ++ L+  GA+ N+ D +G  PLH AAS GY +I  +LI +G  +    +
Sbjct: 80  ACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 71.4 bits (176), Expect = 1e-13
 Identities = 23/58 (39%), Positives = 29/58 (50%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G    L+ LI+A  D N  DYDG +PLH AA  G EE    L++   D+     
Sbjct: 206 AAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 60.6 bits (148), Expect = 3e-10
 Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
             + G    LE  +           DG      A S G  E +  L+++G DIN    
Sbjct: 15  KRWIGSETDLEPPVVKRKKTKVKFDDGA-VFLAACSSGDTEEVLRLLERGADINYANV 71

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.8 bits (146), Expect = 6e-10
 Identities = 8/58 (13%), Positives = 19/58 (32%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA+ G       L+    D    +  G++   +A       +     ++ +  + K  
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.1 bits (144), Expect = 9e-10
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDIN 599
           AA  G L   E LI  GA     + +G +PL +A     EE++   + ++GVDI 
Sbjct: 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 6/35 (17%), Positives = 11/35 (31%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           D   +    L    G E  +   + K     +K +
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFD 39

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 7/59 (11%), Positives = 14/59 (23%), Gaps = 6/59 (10%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           A        L+  +      NR   D  +           +   +L    ++      S
Sbjct: 146 AEEEAMEELLQNEV------NRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKS 198

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 74.8 bits (185), Expect = 2e-15
 Identities = 22/58 (37%), Positives = 34/58 (58%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A   G L  +  L++ GADP+  D +G S +HLAA  G+  I+ +LI KG D+++   
Sbjct: 83  ATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 72.5 bits (179), Expect = 2e-14
 Identities = 15/58 (25%), Positives = 27/58 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  +G   +   L+ AG D  + D +  + LH AA     +++ + I KG  ++  G 
Sbjct: 16  ATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGG 73

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 66.3 bits (163), Expect = 2e-12
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 546 AAYHGDLYQ-LEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AAY          L+      N  D Y   + LH A   G   +++ L++ G +++ +  
Sbjct: 149 AAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.5 bits (161), Expect = 4e-12
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE-EIMTFLIQKGVDINLKGN 603
           AA  G    +  LI  G D +  D +G +PL  AA R +  +    L+   V +NL   
Sbjct: 116 AAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 65.1 bits (160), Expect = 4e-12
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +  +  ++  I  GA  ++   D   +PLH A  +G+  ++  L++ G D +L   
Sbjct: 49  AAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDG 107

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 64.4 bits (158), Expect = 9e-12
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A   G+   +  L+ AGA+ +  +  G S L LA  R    ++  L +        
Sbjct: 184 AVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYD 239

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.4 bits (132), Expect = 2e-08
 Identities = 7/38 (18%), Positives = 11/38 (28%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
              D      +  A   G  E    L++ G D+     
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDK 40

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 75.6 bits (187), Expect = 3e-15
 Identities = 19/58 (32%), Positives = 24/58 (41%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA HG    L  LI  G   N    D  SPLH A   G+   +  L++ G  +N    
Sbjct: 66  AAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 70.6 bits (174), Expect = 1e-13
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A   G L  ++ L++ GA  N    D  +PL  A   G  + +  L+Q G  +  + +
Sbjct: 99  ACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESD 156

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 68.3 bits (168), Expect = 9e-13
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A   G    +  L++ GA       D  SP+H AA RG+ E +  LI  G +I+ K +
Sbjct: 132 ACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKIS 188

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.9 bits (167), Expect = 1e-12
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  +     ++ L+ +GAD N+      SPLH       EE+   L+  G D   K  
Sbjct: 197 ACENQQRACVKKLLESGADVNQGK-GQDSPLHAVVRTASEELACLLMDFGADTQAKNA 253

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 67.1 bits (165), Expect = 2e-12
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA  G +  +  LI  G + +       +PL+LA        +  L++ G D+N
Sbjct: 164 AARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN 217

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
                       L+  GAD    + +G+ P+ L         + FL ++G  + 
Sbjct: 229 VVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQL-FLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 31/89 (34%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-------------------------------YDGRS 574
            + H   +   GL+  G+     D                                   S
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWS 61

Query: 575 PLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           P+H AA  G++  +  LI +G  +N+   
Sbjct: 62  PMHEAAIHGHQLSLRNLISQGWAVNIITA 90

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.5 bits (192), Expect = 3e-15
 Identities = 19/58 (32%), Positives = 34/58 (58%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A++ G L  ++ L++ GA PN ++    +PLH+AA  G+ E+  +L+Q    +N K  
Sbjct: 21  ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAK 78

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.8 bits (185), Expect = 2e-14
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            A  G +   + LI+ G   + T   G +PLH+A+  G  +++ FL+Q   D+N K  
Sbjct: 285 VAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.8 bits (185), Expect = 2e-14
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A +H +L  ++ L+  G  P+   ++G +PLH+AA +   E+   L+Q G   N +  
Sbjct: 186 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 243

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.7 bits (182), Expect = 4e-14
 Identities = 19/59 (32%), Positives = 28/59 (47%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           AA    +     L++ G   N     G +PLHLAA  G+ E++  L+ K  + NL   S
Sbjct: 219 AAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKS 277

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 6e-14
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G    +  L+   A+ N  +  G +PLHL A  G+  +   LI+ GV ++    
Sbjct: 252 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTR 309

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 73.3 bits (181), Expect = 6e-14
 Identities = 17/58 (29%), Positives = 27/58 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G    ++ L+   A+PN     G +PLH+AA  G+ E +  L++K         
Sbjct: 87  AARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTK 144

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.9 bits (180), Expect = 7e-14
 Identities = 15/59 (25%), Positives = 25/59 (42%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           AA  G +  +  L+   A        G +PLH+AA  G   +   L+++    N  G +
Sbjct: 120 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKN 178

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 9e-14
 Identities = 19/58 (32%), Positives = 35/58 (60%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A+++G++  ++ L++  AD N     G SPLH AA +G+ +I+T L++ G   N   +
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 71.8 bits (177), Expect = 2e-13
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +G +   E L+   A PN    +G +PLH+A      +I+  L+ +G   +    
Sbjct: 153 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 210

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 70.6 bits (174), Expect = 4e-13
 Identities = 16/58 (27%), Positives = 27/58 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G     + L++  A  N    D ++PLH AA  G+  ++  L++   + NL   
Sbjct: 54  AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATT 111

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 66.0 bits (162), Expect = 1e-11
 Identities = 12/42 (28%), Positives = 20/42 (47%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           G         G +PLH+A+  G+  I+  L+Q+G   N+   
Sbjct: 4   GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV 45

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.9 bits (154), Expect = 1e-10
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL---IQKGVDINLKG 602
           AA  G    +  L++ GA PN    DG +PL +A   GY  +   L     +   + +  
Sbjct: 351 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 410

Query: 603 N 603
            
Sbjct: 411 K 411

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.5 bits (179), Expect = 3e-15
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G + ++  L+ AGA+PN  +  GR P+ +    G   +   L+  G + N    
Sbjct: 19  AAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADP 75

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 72.1 bits (178), Expect = 4e-15
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G L  L  L RAGA  +  D  GR P+ LA   G+ ++  +L           +
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 67.1 bits (165), Expect = 2e-13
 Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 546 AAY-HGDLYQLEGLIRAGADPNRTDYDGR-SPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
                  + +L  L+  GA+PN  D      P+H AA  G+ + +  L + G  ++++  
Sbjct: 52  MMMGSARVAEL--LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDA 109

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 559 IRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           +   A  +         L  AA+RG  E +  L++ G + N   +
Sbjct: 1   MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNAPNS 43

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 40.5 bits (96), Expect = 4e-04
 Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 5/42 (11%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 587
           A   G       L  A          G +   + A+ G  +I
Sbjct: 118 AEELGHRDVARYLRAAAGGTR-----GSNHARIDAAEGPSDI 154

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 70.5 bits (174), Expect = 5e-15
 Identities = 24/58 (41%), Positives = 35/58 (60%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +G   +++ L+  GAD N    DG +PLHLAA  G+ EI+  L+ KG D+N +  
Sbjct: 16  AAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSK 73

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 67.4 bits (166), Expect = 7e-14
 Identities = 22/58 (37%), Positives = 31/58 (53%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +G    ++ L+  GAD N    DG +P HLA   G+ EI+  L  KG D+N +  
Sbjct: 49  AAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.9 bits (131), Expect = 3e-09
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           G        DG +PLH AA  G+ E +  L+ KG D+N +  
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK 40

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Length = 237

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 7/150 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
                L +    + ++ ++ +     +  GE +  +      ++ V  G ++   +   G
Sbjct: 13  ARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTG 72

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
           +E  VS      SFGE   L N P P + +    C ++ I    F +++         +L
Sbjct: 73  SEAVVSVFTRGESFGEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISIL 132

Query: 509 TNLLQGKESDLRLKQLQSDITFHISKHEAE 538
                       L  L + +   +      
Sbjct: 133 ATTFG------HLHSLVAQLE-QLKAQTGA 155

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 73.5 bits (181), Expect = 7e-15
 Identities = 26/157 (16%), Positives = 51/157 (32%), Gaps = 10/157 (6%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIV--IRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEV 442
               + ++PLF+G   E    I+  ++LH      GE I++ GN   QL F+  G++  V
Sbjct: 16  MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIV 75

Query: 443 GIEENGTEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYF 501
              +      +  +         S+         +         + I K    + +  Y 
Sbjct: 76  TNAKENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRY- 134

Query: 502 CDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
                   N +       R + L S +       + +
Sbjct: 135 ---DIFRLNYM--NIVSNRAQNLYSRLW-DEPTLDLK 165

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213

 Score = 73.0 bits (180), Expect = 7e-15
 Identities = 22/151 (14%), Positives = 56/151 (37%), Gaps = 8/151 (5%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           +    +        + +++       F  GE++  + + ++ +  +  G L+   + ENG
Sbjct: 1   MGSDKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENG 60

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
               +  + P        I  + P+ P  V   E  ++L I K+ F +++       R++
Sbjct: 61  KTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKD----REL 116

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
           L   L  K+     + +   +   ++     
Sbjct: 117 LLFFL--KDVSEHFRVVSEKLF-FLTTKTLR 144

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 69.3 bits (171), Expect = 8e-15
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +G L  ++ L+ AGAD N  D +GR+PLHLAA  G+ E++  L++ G D+N K  
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 59.3 bits (145), Expect = 2e-11
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
           AA +G L  ++ L+ AGAD N  D +GR+PLHLAA  G+ E++  L++ G
Sbjct: 42  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 49.7 bits (120), Expect = 5e-08
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           +GR+PLHLAA  G+ E++  L++ G D+N K  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 33

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 71.7 bits (177), Expect = 8e-15
 Identities = 16/58 (27%), Positives = 28/58 (48%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA HG    ++ L++  AD N  +  G  PLH A   G +++   L+  G  +++   
Sbjct: 79  AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 136

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.4 bits (171), Expect = 6e-14
 Identities = 22/58 (37%), Positives = 29/58 (50%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A   G    +E LI  GA  N  +    +PLHLAAS G+ +I+  L+Q   DIN    
Sbjct: 46  ACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE 103

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 68.2 bits (168), Expect = 1e-13
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
               G+   +   +     D N+ D  G SPLH A   G   ++  LI +G  IN+   
Sbjct: 12  QCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNR 70

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 66.7 bits (164), Expect = 6e-13
 Identities = 12/54 (22%), Positives = 22/54 (40%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A + G     E L+  GA  +  +  G  P+  A +   E +     + G ++N
Sbjct: 112 ACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 41.6 bits (99), Expect = 2e-04
 Identities = 3/36 (8%), Positives = 9/36 (25%), Gaps = 1/36 (2%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGN 603
             +    +      G    +   +     D+N   +
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDD 37

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.5 bits (174), Expect = 9e-15
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G +  +  L+ AGADPN  +  GR P+ +    G  ++   L+  G + N    
Sbjct: 19  AAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADP 75

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 67.1 bits (165), Expect = 1e-13
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 558 LIRAGADPNRTDYDGR-SPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           L+  GA+PN  D      P+H AA  G+ + +  L + G  +++   
Sbjct: 63  LLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 66.7 bits (164), Expect = 2e-13
 Identities = 20/52 (38%), Positives = 26/52 (50%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           AA  G L  L  L RAGA  +  D  GR P+ LA  +G+ +I  +L     D
Sbjct: 85  AAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 64.8 bits (159), Expect = 8e-13
 Identities = 10/43 (23%), Positives = 16/43 (37%)

Query: 561 AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
                +       + L  AA+RG  E +  L++ G D N    
Sbjct: 1   GSPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNR 43

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.1 bits (183), Expect = 9e-15
 Identities = 19/58 (32%), Positives = 23/58 (39%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A        LE L++AGADP    Y GR+PL  A  R    +   L   G      G 
Sbjct: 199 AVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG 256

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 70.3 bits (173), Expect = 2e-13
 Identities = 15/58 (25%), Positives = 21/58 (36%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G+   +E L  AGA     +  G + LHLA           L+Q         +
Sbjct: 52  AAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 68.3 bits (168), Expect = 7e-13
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           +  + +  +              +YDG +PLH+A      E++  L   G D+N    
Sbjct: 132 SQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  H D   +  L  AGAD N+ +   GR+PLHLA       ++  L++ G D   +  
Sbjct: 165 AVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMY 223

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.8 bits (164), Expect = 2e-12
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 3/61 (4%)

Query: 546 AAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
           A  H     L+ L+   A     +  +  G++ LHLAA  G    +  L   G  + +  
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAE 75

Query: 603 N 603
            
Sbjct: 76  R 76

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 50.6 bits (122), Expect = 5e-07
 Identities = 8/42 (19%), Positives = 11/42 (26%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEI 587
           A    +      L   GA       D  SP   + S    + 
Sbjct: 232 ALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDN 273

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD---INLKGN 603
                DG + LHLA    +E  + FL+        ++L+ +
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQND 43

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 7/72 (9%), Positives = 15/72 (20%), Gaps = 14/72 (19%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYD-------------GRSPLHLAASRGYE-EIMTFL 591
           A           L++      R   D               +P  + +    E E     
Sbjct: 85  ACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRD 144

Query: 592 IQKGVDINLKGN 603
               + +  +  
Sbjct: 145 EDWRLQLEAENY 156

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 70.1 bits (173), Expect = 1e-14
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +G L  ++ L+ AGAD N  D +GR+PLHLAA  G+ E++  L++ G D+N K  
Sbjct: 9   AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 66

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 68.1 bits (168), Expect = 5e-14
 Identities = 26/58 (44%), Positives = 38/58 (65%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +G L  ++ L+ AGAD N  D +GR+PLHLAA  G+ E++  L++ G D+N K  
Sbjct: 42  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 58.5 bits (143), Expect = 1e-10
 Identities = 23/50 (46%), Positives = 34/50 (68%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
           AA +G L  ++ L+ AGAD N  D +GR+PLHLAA  G+ E++  L++ G
Sbjct: 75  AARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 50.0 bits (121), Expect = 8e-08
 Identities = 15/33 (45%), Positives = 23/33 (69%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           +GR+PLHLAA  G+ E++  L++ G D+N K  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 33

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 73.0 bits (179), Expect = 1e-14
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)

Query: 546 AAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
            AY G L +L E ++   +   RTD D R+ LH A S G+ EI+ FL+Q GV +N K ++
Sbjct: 13  LAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDA 72

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 63.7 bits (155), Expect = 1e-11
 Identities = 22/59 (37%), Positives = 31/59 (52%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           A   G    +E L++ G   N  D  G SPLH+AAS G +EI+  L+ KG  +N    +
Sbjct: 47  ACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQN 105

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.8 bits (137), Expect = 3e-09
 Identities = 19/59 (32%), Positives = 31/59 (52%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           AA  G    ++ L+  GA  N  + +G +PLH AAS+   EI   L++ G + + K + 
Sbjct: 80  AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY 138

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 19/62 (30%), Positives = 30/62 (48%)

Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
           ++ AA  G+L  +  L+   A  N  D +G +PLHLA      E   FL+ +G  I ++ 
Sbjct: 143 MHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIEN 202

Query: 603 NS 604
             
Sbjct: 203 KE 204

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.7 bits (129), Expect = 3e-08
 Identities = 13/62 (20%), Positives = 29/62 (46%)

Query: 543 VNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
           ++ AA          L+  GA+P+  D+   + +H AA++G  +++  L+      N++ 
Sbjct: 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQD 169

Query: 603 NS 604
             
Sbjct: 170 TE 171

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.3 bits (128), Expect = 4e-08
 Identities = 12/98 (12%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAG 562
            G   + ++L   ++   ++  + +   H+             A     + + + L+  G
Sbjct: 149 KGNLKMVHILLFYKASTNIQDTEGNTPLHL-------------ACDEERVEEAKFLVTQG 195

Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           A     + + ++PL +A   G   ++   + +G + ++
Sbjct: 196 ASIYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.1 bits (104), Expect = 5e-05
 Identities = 4/33 (12%), Positives = 9/33 (27%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
                 +LA S   +E+   ++           
Sbjct: 6   SNIMICNLAYSGKLDELKERILADKSLATRTDQ 38

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 23/58 (39%), Positives = 33/58 (56%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G   ++  L+  GAD N  D  G +PLHLAA  G+ EI+  L++ G D+N   +
Sbjct: 21  AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDH 78

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 70.9 bits (175), Expect = 1e-14
 Identities = 25/58 (43%), Positives = 36/58 (62%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G L  +E L++ GAD N  D +G +PLHLAA  G+ EI+  L++ G D+N +  
Sbjct: 87  AALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 9e-14
 Identities = 24/58 (41%), Positives = 36/58 (62%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA++G L  +E L++ GAD N  D+ G +PL LAA  G+ EI+  L++ G D+N    
Sbjct: 54  AAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM 111

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 56.2 bits (137), Expect = 2e-09
 Identities = 15/49 (30%), Positives = 25/49 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594
           AA  G L  +E L++ GAD N  D  G++   ++   G E++   L + 
Sbjct: 120 AAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 50.4 bits (122), Expect = 2e-07
 Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 562 GADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           G+  +     D    L  AA  G ++ +  L+  G D+N +  
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDA 45

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 74.5 bits (184), Expect = 1e-14
 Identities = 17/58 (29%), Positives = 26/58 (44%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA       +E L + GA  N  D  G++ LH AA  G+ +    L+  G D ++   
Sbjct: 254 AAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 73.3 bits (181), Expect = 3e-14
 Identities = 19/58 (32%), Positives = 27/58 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  +G     E L++ GA  N  D    +PLH AAS+   E+ + L+  G D  L   
Sbjct: 98  ACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 72.1 bits (178), Expect = 7e-14
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 3/61 (4%)

Query: 546 AAYHGDLYQL---EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
           A       +    E L+R GA+ N  + D  +PLH+AA R + ++M  L + G  +N   
Sbjct: 218 AVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALD 277

Query: 603 N 603
           +
Sbjct: 278 S 278

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 70.6 bits (174), Expect = 3e-13
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +  +  ++ L++ GAD +  D  G  PLH A S G+ E+   L++ G  +N    
Sbjct: 65  AAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 68.7 bits (169), Expect = 1e-12
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G+  +L   L     + + +D    +PLHLAA      I+  L+Q G D++ K  
Sbjct: 31  AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDK 89

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 12/61 (19%), Positives = 26/61 (42%), Gaps = 3/61 (4%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE---EIMTFLIQKGVDINLKG 602
           AA   DL +++  +       +      + LH A +  +    ++   L++KG ++N K 
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKN 244

Query: 603 N 603
            
Sbjct: 245 K 245

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 1e-09
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRG-YEEIMTFLIQKGVDINLKGN 603
           L    A    T    +  L  AA  G  E++M  L    V+ +    
Sbjct: 10  LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDG 56

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 59.4 bits (145), Expect = 1e-09
 Identities = 10/58 (17%), Positives = 20/58 (34%), Gaps = 5/58 (8%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G L     L+  G+DP+     G +   +       E +  ++ +   +     
Sbjct: 287 AALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDV 339

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 58.7 bits (143), Expect = 2e-09
 Identities = 12/54 (22%), Positives = 23/54 (42%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA    +     L+  GADP   +  G+S + +A +    E +T+  +    + 
Sbjct: 131 AASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 20/58 (34%), Positives = 32/58 (55%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G   ++  L+  GAD    D +G +PLHLAA  G+ E++  L++ G D+  +  
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 62.2 bits (152), Expect = 3e-12
 Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 3/58 (5%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            + H   +   GL+  G+       D    L  AA  G ++ +  L+  G D+  K  
Sbjct: 1   GSSHHHHHHSSGLVPRGSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDK 55

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 14/46 (30%), Positives = 24/46 (52%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
           AA +G L  ++ L+ AGAD    D  G++   ++   G E++   L
Sbjct: 64  AARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 72.6 bits (179), Expect = 1e-14
 Identities = 17/58 (29%), Positives = 33/58 (56%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           ++  G+   ++ +I    DP+  + +G + LH A   G+ EI+ FL+Q GV++N   +
Sbjct: 44  SSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS 101

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 18/59 (30%), Positives = 29/59 (49%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           A   G    ++ L++ G + N  D DG +PLH AAS    ++  FL++ G  +     S
Sbjct: 77  AVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYS 135

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 7/58 (12%), Positives = 17/58 (29%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
                        I  G           + L  ++  G  +++  +I +  D +L  +
Sbjct: 12  GKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRIIYEVDDPSLPND 68

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 10/61 (16%), Positives = 19/61 (31%), Gaps = 3/61 (4%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDG---RSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
           AA   ++   + L+ +GA      Y      +        GY +   FL      + +  
Sbjct: 110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMN 169

Query: 603 N 603
            
Sbjct: 170 K 170

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 4/33 (12%), Positives = 10/33 (30%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           +  G+  L         +  +  I  G+ +   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFN 34

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 5/56 (8%), Positives = 15/56 (26%), Gaps = 3/56 (5%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
               G     + L          +      L     +  +E+    +++G  + + 
Sbjct: 146 EMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTII 198

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Length = 227

 Score = 71.9 bits (177), Expect = 2e-14
 Identities = 24/151 (15%), Positives = 52/151 (34%), Gaps = 8/151 (5%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           ++   LF+  S   + +++          G  +  +G      Y++  G ++   +   G
Sbjct: 11  LQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEG 70

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
            E  +   +  ++F E  +  + P    T Q     +L R   +++   +         +
Sbjct: 71  QEKILEVTNERNTFAEAMMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALAL 130

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
           L  L        RL Q   +I   +S   A 
Sbjct: 131 LAKLST------RLHQRIDEIE-TLSLKNAT 154

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Length = 260

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 23/143 (16%), Positives = 53/143 (37%), Gaps = 7/143 (4%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            I  + L K  +   +   +   H   +     ++ +G   + LY++  G +  +  +E 
Sbjct: 47  DIGSMVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEE 106

Query: 448 GTEDYVSYLHPNSSFGEVSILCN-IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506
           G E  +SYL+     GE+ +      +   V+    C +  I  + F  +I +      +
Sbjct: 107 GKEMILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMR 166

Query: 507 VLTNLLQGKESDLRLKQLQSDIT 529
           +   + +      RL+     + 
Sbjct: 167 LSAQMAR------RLQVTSEKVG 183

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 72.2 bits (178), Expect = 2e-14
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A    +   +  L++ GAD NR  Y G SP  L   R    I   L Q  ++    
Sbjct: 158 AVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM 213

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 69.1 bits (170), Expect = 2e-13
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 1/60 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           A+ HG L  +E L+  GAD N +   +GR+ LHLA      ++++ L++ G D+N     
Sbjct: 124 ASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQ 183

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.7 bits (169), Expect = 3e-13
 Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 546 AAYHGD----LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A  H +    +  +  +    A  N  +   ++PLHLA      EI   L+  G D  L+
Sbjct: 15  AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR 74

Query: 602 GN 603
             
Sbjct: 75  DF 76

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 68.3 bits (168), Expect = 3e-13
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)

Query: 546 AAYHGDLYQLEGLIRAGADP------NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A   G L  +  L ++   P        T+Y+G + LHLA+  GY  I+  L+  G D+N
Sbjct: 85  ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN 144

Query: 600 LKGN 603
            +  
Sbjct: 145 AQEP 148

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 67.2 bits (165), Expect = 1e-12
 Identities = 18/58 (31%), Positives = 24/58 (41%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A         E L+ AG DP   D+ G +PLHLA  +G    +  L Q     +L   
Sbjct: 52  AVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSI 109

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 569 DYDGRSPLHLAASRGY----EEIMTFLIQKGVDINLKGN 603
             DG S LHLA          E++  +      +N + N
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN 43

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 69.7 bits (172), Expect = 3e-14
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 546 AAY-HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
             +    +     L++ GA PN  D  G SP+H AA  G+ + +  L++ G D+N+   
Sbjct: 43  MMFGSTAIALE--LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 66.7 bits (164), Expect = 3e-13
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G L  L+ L+  GAD N  D  G  P+HLA   G+  +++FL     D++ +  
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDA 131

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 65.9 bits (162), Expect = 6e-13
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  GD+ ++  L+ R    P+  +  G++ L +    G   I   L+++G   N++  
Sbjct: 9   AAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDT 66

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.4 bits (127), Expect = 3e-08
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           A   G    +  L  A +D +R D  G +PL LA  RG ++++  L 
Sbjct: 108 AVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.1 bits (95), Expect = 5e-04
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 572 GRSPLHLAASRG-YEEIMTFLIQKGVDINLKGNS 604
               L  AA+RG  +E+   L ++ V  +     
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRF 35

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 72.6 bits (179), Expect = 3e-14
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA   D   ++ L+ +G D ++ D  G + L+ A   G  + +   ++K   +   G 
Sbjct: 69  AATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 126

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 65.6 bits (161), Expect = 5e-12
 Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A    ++  +  L+ AGA  N    +   PLH AA+    +I+  L+  G+D +   +
Sbjct: 38  AIADNNVRLVCTLLNAGALKNL--LENEFPLHQAATLEDTKIVKILLFSGLDDSQFDD 93

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 65.2 bits (160), Expect = 8e-12
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           S        QL+  +    D  + D  G S  + A +     ++  L+  G   NL  N
Sbjct: 5   SRINTWKSKQLKSFLS-SKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLEN 62

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 1/55 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSP-LHLAASRGYEEIMTFLIQKGVDIN 599
              +G +  +  L+      N  +     P + LA      E++  L +  ++I 
Sbjct: 168 TIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIY 222

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 61.8 bits (151), Expect = 1e-10
 Identities = 8/58 (13%), Positives = 18/58 (31%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A    D+  +   +              S +H+    G+ ++M  L+      N   +
Sbjct: 136 AVMLNDVSIVSYFLSEIPSTFD-LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNS 192

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 5/55 (9%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDG-RSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A   G++  ++  ++           G ++  + A       I+++ + +     
Sbjct: 102 AVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF 156

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 50.6 bits (122), Expect = 6e-07
 Identities = 10/56 (17%), Positives = 18/56 (32%), Gaps = 7/56 (12%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A  + D+  L+ L +   +         S           EI   +I+K V+    
Sbjct: 202 AIDNKDIEMLQALFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSD 250

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 10/74 (13%), Positives = 24/74 (32%), Gaps = 6/74 (8%)

Query: 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           K++  +           D    + +I    +     Y     L +  +   +EI    I 
Sbjct: 216 KYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTK--DLDIVKNNKLDEI----IS 269

Query: 594 KGVDINLKGNSIMQ 607
           K  ++ L   + ++
Sbjct: 270 KNKELRLMYVNCVK 283

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 3e-14
 Identities = 14/124 (11%), Positives = 29/124 (23%), Gaps = 26/124 (20%)

Query: 481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELA 540
            L + L + K     I    + +G  VL + +   +                        
Sbjct: 258 LLTKEL-LQKTDVFLIQACPYHNGTTVLPDRVVWLDF------------VPA-------- 296

Query: 541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
                AA       L+ L     +  R+   G         +    +    +     +  
Sbjct: 297 -----AADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT 351

Query: 601 KGNS 604
           +  S
Sbjct: 352 RSRS 355

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.1 bits (170), Expect = 8e-13
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           AA  G   ++  LI  G  P   +  G + LHLA   G  +   +L   G   +L 
Sbjct: 27  AARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW 82

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.8 bits (164), Expect = 4e-12
 Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 7/81 (8%)

Query: 528 ITFHISKHEAELALKVNS-------AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580
           +    SK    L             A            +  G D N  D +   PL+L+ 
Sbjct: 193 MDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSV 252

Query: 581 SRGYEEIMTFLIQKGVDINLK 601
                 +   L+QK     ++
Sbjct: 253 RAAMVLLTKELLQKTDVFLIQ 273

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.4 bits (163), Expect = 7e-12
 Identities = 12/63 (19%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 546 AAYHGDLYQLEGLI-----RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           A    +   L+ ++     ++    +  +  G S LH A    +E++    ++ G+D+N+
Sbjct: 180 AMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM 239

Query: 601 KGN 603
           + N
Sbjct: 240 EDN 242

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 66.0 bits (162), Expect = 9e-12
 Identities = 11/65 (16%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 546 AAYHGDLYQ--LEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI-----QKGVDI 598
               G  Y   ++ L++ GA P   D    +PL  A      E +  ++     +  + +
Sbjct: 145 CVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRL 204

Query: 599 NLKGN 603
           +    
Sbjct: 205 DYANK 209

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 63.0 bits (154), Expect = 8e-11
 Identities = 9/46 (19%), Positives = 21/46 (45%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
                 +  ++D +    +H+AA +G  + +  LI+ GV   ++  
Sbjct: 6   TDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR 51

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.0 bits (141), Expect = 4e-09
 Identities = 10/54 (18%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A   G +   + L   G   +   + G+ P+HLA      +++  L++   +  
Sbjct: 60  ACKFGCVDTAKYLASVGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKERG 111

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.2 bits (139), Expect = 6e-09
 Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 561 AGADPNRTDYDGRSPLHLAASRG--YEEIMTFLIQKGVDINLKGN 603
                +     G++ LH     G  Y E++  L+Q G     K  
Sbjct: 127 NEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDK 171

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 7/71 (9%), Positives = 19/71 (26%), Gaps = 13/71 (18%)

Query: 546 AAYHGDLYQLEGLIRAGA-------------DPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           +     +   + L++                            +  AA    +E++  L 
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQ 310

Query: 593 QKGVDINLKGN 603
           +K  ++    N
Sbjct: 311 EKLDEVVRSLN 321

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Length = 333

 Score = 73.2 bits (179), Expect = 3e-14
 Identities = 20/119 (16%), Positives = 46/119 (38%), Gaps = 1/119 (0%)

Query: 385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI 444
            +  +  + +F+GC +E +  +   +       G+V++ +G        +  G   EV  
Sbjct: 11  RVEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSA-EVSH 69

Query: 445 EENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCD 503
             +     ++   P    GE+++L + P+  TV   E        + +F  ++ I    
Sbjct: 70  VGDDGVAIIARALPGMIVGEIALLRDSPRSATVTTIEPLTGWTGGRGAFATMVHIPGVG 128

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 71.3 bits (176), Expect = 3e-14
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G +     L++AGA+ +    D R+PL  AA   + E + +LI+ G  ++ K  
Sbjct: 18  AAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDA 75

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 71.3 bits (176), Expect = 4e-14
 Identities = 17/58 (29%), Positives = 28/58 (48%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA+ G +   E L+ A  D +  +  G SPLH+AA     + +   + +  D+ LK  
Sbjct: 151 AAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.7 bits (172), Expect = 1e-13
 Identities = 14/58 (24%), Positives = 25/58 (43%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  +  +  ++ L+  G+D N  D +    LH AA  G  +I   L+    D++    
Sbjct: 118 ATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI 175

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 65.5 bits (161), Expect = 4e-12
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G    ++ L+  G  D N  D  G +P+  A    + +++  L+ KG DIN++ N
Sbjct: 84  AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDN 142

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 64.7 bits (159), Expect = 7e-12
 Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGN 603
           AA +  L  ++ LI+AGA  +  D +G + LHLAA +G+ E++ +L+  G +D+N + +
Sbjct: 51  AAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.7 bits (146), Expect = 3e-10
 Identities = 13/41 (31%), Positives = 20/41 (48%)

Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            +      + RSPLH AA  G+ +I   L+Q G +I+    
Sbjct: 2   MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSE 42

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.7 bits (146), Expect = 3e-10
 Identities = 8/52 (15%), Positives = 17/52 (32%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           AA       +   +   +D    + +G +PL  A+          + +   D
Sbjct: 184 AARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 69.3 bits (171), Expect = 3e-14
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G    +E L++ GAD N  D    + LH A    ++E++  LI+ G D++ +  
Sbjct: 74  AASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 68.6 bits (169), Expect = 7e-14
 Identities = 22/58 (37%), Positives = 32/58 (55%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +G     E L+RAG   +      R+PLH+AAS G+  I+  L++ G D+N K  
Sbjct: 41  AAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM 98

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 65.1 bits (160), Expect = 1e-12
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G   ++  L+  GA    TD+ G SPLHLAA  G+      L++ GV  + +  
Sbjct: 9   AARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTK 65

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 52.0 bits (126), Expect = 4e-08
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
           A  H     +E LI+ GAD +      ++   ++   G E++   L
Sbjct: 107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 43.9 bits (105), Expect = 2e-05
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           D    L  AA  G ++ +  L+  G    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT 29

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 72.1 bits (178), Expect = 4e-14
 Identities = 18/58 (31%), Positives = 27/58 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A        +E L+R GADP     +G +P  LAA  G  +++   + KG D+N    
Sbjct: 46  AVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF 103

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 71.3 bits (176), Expect = 8e-14
 Identities = 18/58 (31%), Positives = 30/58 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G +  L+  +  GAD N  D+ G +    AA  G  + + FL ++G ++NL+  
Sbjct: 79  AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.5 bits (166), Expect = 1e-12
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  + D+  ++ L+  GA+ N + +  G +PLH A     E+I+  L++ G D  L+  
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKK 70

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 67.5 bits (166), Expect = 1e-12
 Identities = 14/57 (24%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A     L  ++ L+ +   + N TD DG++ L LA     ++I   L ++G   +  
Sbjct: 226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 65.2 bits (160), Expect = 9e-12
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 5/63 (7%)

Query: 546 AAYHGDLYQLEG----LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINL 600
           A    D   +E     L+  GAD N     G++PL LA  + +  ++  L+ Q+ ++IN 
Sbjct: 189 ALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND 248

Query: 601 KGN 603
             +
Sbjct: 249 TDS 251

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.9 bits (154), Expect = 5e-11
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRG----YEEIMTFLIQKGVDINL 600
           AA  G +  L+ L+   GAD N  D  GR+ L  A         E I   L+  G D+N+
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 601 KGN 603
           +G 
Sbjct: 215 RGE 217

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 59.4 bits (145), Expect = 6e-10
 Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 11/69 (15%)

Query: 546 AAYHGDLYQLEGLIRAGADPN----------RTDYDGRSPLHLAASRGYEEIMTFLI-QK 594
           AA +G +  L+ L + GA+ N          R    G + L  AA +G+ E++  L+ + 
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 595 GVDINLKGN 603
           G D+N   N
Sbjct: 172 GADVNACDN 180

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.9 bits (128), Expect = 1e-07
 Identities = 5/35 (14%), Positives = 14/35 (40%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
             +    L  A      +++  L++ G ++N +  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE 36

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 71.3 bits (176), Expect = 4e-14
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  +  L  ++ L++ GA+ N   Y G S LH A+ RG   ++  L++ G D +LK  
Sbjct: 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 214

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 67.5 bits (166), Expect = 7e-13
 Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 546 AAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A   G+L      +    + G + +  +   ++PLHLA       ++  L+  G      
Sbjct: 16  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMAL 75

Query: 602 GN 603
             
Sbjct: 76  DR 77

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 65.6 bits (161), Expect = 4e-12
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 532 ISKHEAELALKVNS-----------AAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLA 579
           +    A   L + +           A        ++ L+  GAD +  D   GRSPL  A
Sbjct: 99  LD-SAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHA 157

Query: 580 ASRGYEEIMTFLIQKGVDINLKGNS 604
                  ++  L+Q G ++N +  S
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYS 182

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.8 bits (159), Expect = 6e-12
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 4/62 (6%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG----VDINLK 601
           A        +  L+ AGA P   D  G++  HLA        +  L+       +D+  +
Sbjct: 53  AVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEAR 112

Query: 602 GN 603
             
Sbjct: 113 NY 114

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 546 AAYHGDLYQLEGLIRAGA----DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A  H     L  L+ + A    D    +YDG + LH+A +   +E +  L+++G DI+  
Sbjct: 86  ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV 145

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 60.2 bits (147), Expect = 2e-10
 Identities = 14/50 (28%), Positives = 25/50 (50%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
           A+  G L  +  L+R+GAD +  +    +PL +A SR   +I+     + 
Sbjct: 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 51.3 bits (124), Expect = 2e-07
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 4/42 (9%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLI----QKGVDINLKGN 603
            R D DG +PLH+A  +G    +  L+    Q G ++++  N
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN 44

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 71.5 bits (176), Expect = 4e-14
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           AA   D   L  L+    D +  D +GR+ L   A  G ++ +  L + G D++ +
Sbjct: 52  AARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR 106

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.2 bits (170), Expect = 2e-13
 Identities = 16/58 (27%), Positives = 22/58 (37%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +     +E L+  GAD    D  G + L LA            +Q G  I L+  
Sbjct: 118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKV 175

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 67.6 bits (166), Expect = 7e-13
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            A  G    +  L  AGAD +  D   G + LH+AA     E++  L++ G DI ++  
Sbjct: 84  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 142

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
               G            AD      +  +P   AA +  E+ ++ L++   D++    
Sbjct: 22  EWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLLE-DRDVDAVDE 75

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 5/80 (6%), Positives = 12/80 (15%), Gaps = 22/80 (27%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDY----------------------DGRSPLHLAASRG 583
           A            ++ G                               G+   +L   + 
Sbjct: 151 AREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKD 210

Query: 584 YEEIMTFLIQKGVDINLKGN 603
             +          +   K  
Sbjct: 211 GGDCEWVKGVHVAEDVAKDY 230

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 44.1 bits (105), Expect = 5e-05
 Identities = 5/37 (13%), Positives = 11/37 (29%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
           +RT  +G     +    G+            D+  + 
Sbjct: 9   SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY 45

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.7 bits (174), Expect = 4e-14
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKGN 603
           AA  G+L  L   +      N  D  G + L+ A   G+++I+  L  Q  +++N +  
Sbjct: 80  AAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNK 138

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 69.6 bits (171), Expect = 1e-13
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A + G    +E L  +   + N+ +  G + LH AA +GY +I+  L+ KG   +L+  
Sbjct: 113 ACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNI 171

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 67.7 bits (166), Expect = 6e-13
 Identities = 8/58 (13%), Positives = 20/58 (34%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA+ G    ++ L+  GA  +  + + +    +A +     ++           L   
Sbjct: 147 AAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA 204

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 11/86 (12%), Positives = 21/86 (24%), Gaps = 12/86 (13%)

Query: 525 QSDITFHISKHEAELALKVNS-------AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLH 577
           +      +   E ++    +            G        +              +PLH
Sbjct: 24  EPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRT-----GLIPSNYVAEQAESIDNPLH 78

Query: 578 LAASRGYEEIMTFLIQKGVDINLKGN 603
            AA RG    +   +   V +N    
Sbjct: 79  EAAKRGNLSWLRECLDNRVGVNGLDK 104

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 6/39 (15%), Positives = 11/39 (28%)

Query: 565 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           P +    G+  +  A           L  +  DI    +
Sbjct: 5   PPKPVKPGQVKVFRALYTFEPRTPDELYIEEGDIIYITD 43

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 70.9 bits (175), Expect = 5e-14
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)

Query: 546 AAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           A    + +++ E L    +   + D DGR PLH + S    EI +FL+ K  ++NL 
Sbjct: 9   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.9 bits (162), Expect = 2e-12
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 546 AAYHGDLYQLEGLI--RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A   G+L  ++ L       D N+    G + LHLA  + + E+  FLI+ G  + +K  
Sbjct: 79  ACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 64.0 bits (157), Expect = 1e-11
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKGN 603
           A         + LI  GA     D   + PLH AAS G  +++  L   G   +N +  
Sbjct: 114 AVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 58.6 bits (143), Expect = 6e-10
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 546 AAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGN 603
           AA  G L  +E L   G +  N  D  G +PL  A + G+ +    L++K G + +L  N
Sbjct: 147 AASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDN 206

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.8 bits (141), Expect = 1e-09
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDY---DGRSPLHLAASRGYEEIMTFLIQK--GVDINL 600
           +           L+    + N  DY    G +P H+A S G  E++  L  +    D+N 
Sbjct: 43  SVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK 102

Query: 601 KGN 603
             N
Sbjct: 103 ITN 105

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 44.0 bits (105), Expect = 5e-05
 Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           A   G       L+ + GA+ +  D  G     +A +   E++  F +
Sbjct: 181 ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.6 bits (104), Expect = 7e-05
 Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 1/33 (3%)

Query: 572 GRSPLHLAASRG-YEEIMTFLIQKGVDINLKGN 603
              PLH A     + ++   L  K   +  K  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQ 34

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 70.2 bits (173), Expect = 5e-14
 Identities = 17/58 (29%), Positives = 25/58 (43%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A         E L       +  D +G +PL++A      EI   LI +G DINL+ +
Sbjct: 13  ANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNS 70

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 66.7 bits (164), Expect = 7e-13
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGN 603
           A ++ D+   + LI  GAD N  +    SP   A ++G  EI+ ++++    D+N    
Sbjct: 46  AVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR 104

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.5 bits (148), Expect = 1e-10
 Identities = 14/60 (23%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGN 603
           A   G    L  +++    D N+ +  G + L  AA +G+ + +  L++ G  DI+ + +
Sbjct: 79  AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.8 bits (146), Expect = 2e-10
 Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 6/64 (9%)

Query: 546 AAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAA-----SRGYEEIMTFLIQKGVDIN 599
           AA  G +  ++ L+  G  D +  +  G + L  A      ++ Y++I+  L++ G D +
Sbjct: 113 AAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS 172

Query: 600 LKGN 603
           +K N
Sbjct: 173 IKDN 176

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 57.1 bits (139), Expect = 1e-09
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
            EA           + D+ +L  L+  GAD +  D  GR+ +  A  +GY EI   L Q
Sbjct: 145 IEA--VGLREGNQLYQDIVKL--LMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 51.7 bits (125), Expect = 9e-08
 Identities = 5/35 (14%), Positives = 12/35 (34%)

Query: 569 DYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            Y+  + L  A  R  +++   L      ++    
Sbjct: 3   TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDT 37

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 69.0 bits (170), Expect = 5e-14
 Identities = 21/58 (36%), Positives = 28/58 (48%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  +G     E L++ GA  N  D    +PLH AA++G  EI   L+Q G D   K  
Sbjct: 82  ACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 139

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 67.8 bits (167), Expect = 2e-13
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA +  +  +E L++ GAD +  D  G  PLH A S G+ E+   L++ G  +N+   
Sbjct: 49  AAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 106

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 61.3 bits (150), Expect = 3e-11
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  GD+  ++ L      +    +    +PLH AA      ++ +L+Q G D++ K  
Sbjct: 15  AAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDK 73

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.7 bits (133), Expect = 4e-09
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
           AA  G     + L++ GADP + + DG +PL L    G  +I   L    
Sbjct: 115 AAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDA 163

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 4/43 (9%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKGN 603
           GA  N    +    L  AA  G  E +  L   + V+      
Sbjct: 1   GAMGNS---EADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG 40

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.1 bits (170), Expect = 8e-14
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA   D   L  L+    D +  D +GR+ L   A  G ++ +  L + G D++ +  
Sbjct: 51  AARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.5 bits (166), Expect = 3e-13
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           AA +     +E L+  GAD    D  G + L LA            +Q G  I L+
Sbjct: 117 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLE 172

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 67.1 bits (165), Expect = 4e-13
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            A  G    +  L  AGAD +  D   G + LH+AA     E++  L++ G DI ++  
Sbjct: 83  VAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 56.3 bits (137), Expect = 2e-09
 Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 4/58 (6%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
               G            AD      +  +P   AA +  E+ ++ L+ +  D++    
Sbjct: 21  EWKDGHSPSWVPSSYIAADVVS---EYETPWWTAARKADEQALSQLL-EDRDVDAVDE 74

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 46.3 bits (111), Expect = 5e-06
 Identities = 5/41 (12%), Positives = 11/41 (26%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
               +RT  +G     +    G+            D+  + 
Sbjct: 4   KIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSEY 44

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 67.8 bits (167), Expect = 8e-14
 Identities = 25/58 (43%), Positives = 34/58 (58%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  HG L  +E L++ GAD N  D  G +PLHLAA  G+ EI   L++ G D+N +  
Sbjct: 54  ATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 65.9 bits (162), Expect = 4e-13
 Identities = 21/58 (36%), Positives = 32/58 (55%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G   ++  L+  GAD N  D  G +PL+LA + G+ EI+  L++ G D+N    
Sbjct: 21  AARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDA 78

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 15/47 (31%), Positives = 24/47 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           AA+ G L   E L++ GAD N  D  G++   ++   G E++   L 
Sbjct: 87  AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQ 133

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 46.6 bits (112), Expect = 2e-06
 Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 562 GADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           G+  +     D    L  AA  G ++ +  L+  G D+N K  
Sbjct: 3   GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDE 45

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.9 bits (169), Expect = 9e-14
 Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 8/71 (11%)

Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE------EIMTFLIQ 593
            L+ N+      +     LI  GAD      +G +        G        E+    ++
Sbjct: 45  VLRNNNDEARYKISMF--LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLE 102

Query: 594 KGVDINLKGNS 604
           KG DI      
Sbjct: 103 KGADITALYKP 113

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 68.9 bits (169), Expect = 1e-13
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 7/66 (10%)

Query: 546 AAYHGDLYQLEG-------LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
             ++  + + E          ++G      D  G + L           +  +       
Sbjct: 121 NIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKY 180

Query: 599 NLKGNS 604
           NLK NS
Sbjct: 181 NLKENS 186

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 60.5 bits (147), Expect = 9e-11
 Identities = 7/72 (9%), Positives = 16/72 (22%), Gaps = 13/72 (18%)

Query: 546 AAYHG------DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIM-------TFLI 592
               G           +  +  GAD        +  +       + +             
Sbjct: 82  LFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS 141

Query: 593 QKGVDINLKGNS 604
           Q G+ + +K   
Sbjct: 142 QSGLQLLIKDKW 153

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 55.5 bits (134), Expect = 4e-09
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 5/63 (7%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASR----GYEEIMTFLIQKGVDINL 600
           +AA  G       L   G +         + L+            +I  FLI KG DI  
Sbjct: 12  AAAMLGTYEDFLELFEKGYEDKE-SVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS 70

Query: 601 KGN 603
           +  
Sbjct: 71  RTK 73

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 70.2 bits (173), Expect = 1e-13
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA       LE LI + AD N  D  G+S LH AA+    +    L++ G + +++ N
Sbjct: 131 AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 188

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 67.9 bits (167), Expect = 7e-13
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA   ++     L++ GA+ +  +    +PL LAA  G  E    L+    + ++  +
Sbjct: 164 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 221

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 65.2 bits (160), Expect = 5e-12
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGN 603
           AA +      + L+ A AD N  D  GR+PLH A S   + +   LI+    D++ + +
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.8 bits (159), Expect = 8e-12
 Identities = 13/54 (24%), Positives = 24/54 (44%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA  G     + L+   A+ + TD+  R P  +A  R + +I+  L  +    +
Sbjct: 197 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.0 bits (157), Expect = 2e-11
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A         + LIR  A D +   +DG +PL LAA    E ++  LI    D+N   +
Sbjct: 97  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 155

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMT 589
            I+          NS         +   I  GA   N+TD  G + LHLAA     +   
Sbjct: 15  MIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAK 74

Query: 590 FLIQKGVDINLKGN 603
            L++   D N++ N
Sbjct: 75  RLLEASADANIQDN 88

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 43.2 bits (103), Expect = 1e-04
 Identities = 11/55 (20%), Positives = 20/55 (36%), Gaps = 14/55 (25%)

Query: 564 DPNRTDYDGRSPLHLAASRG-------------YEEIMTFLIQKGVDI-NLKGNS 604
           D N    DG +PL +A+  G                +++  I +G  + N    +
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRT 56

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.0 bits (170), Expect = 2e-13
 Identities = 19/58 (32%), Positives = 29/58 (50%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA       LE LI + AD N  D  G+S LH AA+    +    L++ G + +++ N
Sbjct: 99  AARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 66.7 bits (164), Expect = 1e-12
 Identities = 13/58 (22%), Positives = 26/58 (44%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA   ++     L++ GA+ +  +    +PL LAA  G  E    L+    + ++  +
Sbjct: 132 AAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 189

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 64.7 bits (159), Expect = 5e-12
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGN 603
           AA +      + L+ A AD N  D  GR+PLH A S   + +   LI+    D++ + +
Sbjct: 32  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 90

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A         + LIR  A D +   +DG +PL LAA    E ++  LI    D+N   +
Sbjct: 65  AVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 123

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 13/54 (24%), Positives = 25/54 (46%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA  G     + L+   A+ + TD+  R P  +A  R + +I+  L +  +  +
Sbjct: 165 AAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 63.6 bits (156), Expect = 1e-11
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)

Query: 558 LIRAGAD-PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            I  GA   N+TD  G + LHLAA     +    L++   D N++ N
Sbjct: 10  FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDN 56

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 66.6 bits (164), Expect = 4e-13
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGN 603
           AA  G L  L+ L+   AD N  D +G  PLHLAA  G+  ++ FL++    ++  + +
Sbjct: 77  AARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 66.3 bits (163), Expect = 4e-13
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  GDL QL  L++   + N  +  GR+ L      G  EI   L+ +G + +LK  
Sbjct: 12  AAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ-VMKLGNPEIARRLLLRGANPDLKDR 68

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 65.5 bits (161), Expect = 9e-13
 Identities = 14/46 (30%), Positives = 27/46 (58%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           L+  GA+P+  D  G + +H AA  G+ + +  L++   D+N++ N
Sbjct: 56  LLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 50.8 bits (123), Expect = 1e-07
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 546 AAYHGDLYQLEGLIRAGA-DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
           AA  G L  +E L++  A +    ++ G +   LA   G  E+++ +   G
Sbjct: 110 AAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG 160

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 49.3 bits (119), Expect = 4e-07
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
              + L  AA+RG  E +T L+Q  V++N +  
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVNAQNG 36

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Length = 210

 Score = 67.6 bits (166), Expect = 4e-13
 Identities = 22/138 (15%), Positives = 52/138 (37%), Gaps = 7/138 (5%)

Query: 392 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED 451
           + L K  +   +   +   H   +     ++ +G   + LY++  G +  +  +E G E 
Sbjct: 1   MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEM 60

Query: 452 YVSYLHPNSSFGEVSILCN-IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTN 510
            +SYL+     GE+ +      +   V+    C +  I  + F  +I +      ++   
Sbjct: 61  ILSYLNQGDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQ 120

Query: 511 LLQGKESDLRLKQLQSDI 528
           + +      RL+     +
Sbjct: 121 MAR------RLQVTSEKV 132

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.0 bits (165), Expect = 5e-13
 Identities = 17/58 (29%), Positives = 31/58 (53%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  +  L   E L+  G++ N  D+ G++PL  +   GY E+  FL++ G ++N +  
Sbjct: 75  AVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNL 132

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 65.9 bits (162), Expect = 1e-12
 Identities = 13/58 (22%), Positives = 21/58 (36%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A   G    ++ L+         D +G + L  A       I   L+ KG ++N K  
Sbjct: 42  ACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF 99

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 64.3 bits (158), Expect = 4e-12
 Identities = 16/58 (27%), Positives = 29/58 (50%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           +   G       L+  GA+ N  + +G +PL +A+  G  EI+  L++ G DI+ +  
Sbjct: 108 SIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 55.1 bits (134), Expect = 6e-09
 Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)

Query: 556 EGLIRAGAD--PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           E  I    D   N  D   R+PL +A   G E  +  L++    +  K  
Sbjct: 17  EKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDI 66

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 51.6 bits (125), Expect = 9e-08
 Identities = 11/47 (23%), Positives = 21/47 (44%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI 592
           A+ +G    ++ L+  GAD +  D  G +    A   G +E++    
Sbjct: 141 ASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFT 187

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Length = 232

 Score = 67.3 bits (165), Expect = 8e-13
 Identities = 17/147 (11%), Positives = 45/147 (30%), Gaps = 7/147 (4%)

Query: 392 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTED 451
             ++   + E    +   +          +  +G++ + L+++  GK++ +     G   
Sbjct: 15  RDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFH 74

Query: 452 YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL 511
               + P   FG            T    E  ++L I  ++   ++       R  L  L
Sbjct: 75  ISRIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKAL 134

Query: 512 LQGKESDLRLKQLQSDITFHISKHEAE 538
            +       L   +      +++    
Sbjct: 135 AK------ELGYAERRTV-TLTQKHVR 154

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.7 bits (172), Expect = 9e-13
 Identities = 97/603 (16%), Positives = 180/603 (29%), Gaps = 148/603 (24%)

Query: 111 VGQIAFLF-DIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKAS 169
            G+  + + DI+  F  A+ D+      CK      +         + S    D I  + 
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDN----FDCKDVQDMPK--------SILSKEEIDHIIMSK 58

Query: 170 GRKEAVRYLLWI-RLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFY 228
                   L W     +   V +F   +E+ +RINY F  ++  I  E            
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKF---VEEVLRINYKF--LMSPIKTE--------QRQP 105

Query: 229 YLATTLPPEQEGYTWIGSLKMGDYS------YADFRE----------------IGFWKSY 266
            + T +  EQ    +  +     Y+      Y   R+                +G  K++
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165

Query: 267 ITSMYASVVTMTTVGYGDVHAVNLR-----EMVFIM---IYVSFDMILGAYLIGNMTALI 318
           +         +       +  +NL+     E V  M   +    D    +    + + + 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS-RSDHSSNIK 224

Query: 319 VKGSKTEKFRDKMTDLMKYINRNR----LGRDIRD-QIIGHLRLQYESSYT--EASVLQD 371
           ++       + ++  L+K          L  ++++ +      L  +   T     V   
Sbjct: 225 LR---IHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVTDF 280

Query: 372 IPISIRAKIS-----QTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL--P------G 418
           +  +    IS      TL     E   L      ++++     L  E     P       
Sbjct: 281 LSAATTTHISLDHHSMTLTPD--EVKSLL----LKYLDCRPQDLPREVLTTNPRRLSIIA 334

Query: 419 EVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPN---SSFGEVSIL---CNIP 472
           E I +     D    V   KL  +       E  ++ L P      F  +S+     +IP
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTI------IESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388

Query: 473 -----------QPYTVQ--VCELCRLLRIDKQSFTNII---DIYF-----CDG-----RK 506
                          V   V +L +   ++KQ   + I    IY       +      R 
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 507 VLT--NLLQGKES-DLRLKQLQSDITFHISKH--EAELALKVN--SAAYHGDLYQLEGLI 559
           ++   N+ +  +S DL    L      HI  H    E   ++      +  D   LE  I
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKI 507

Query: 560 RAGADPNRTDYDGRSPLH-LAASRGY------------EEIMTFLIQKGVD-INLKGNSI 605
           R  +          + L  L   + Y              I+ FL +   + I  K   +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567

Query: 606 MQI 608
           ++I
Sbjct: 568 LRI 570

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.8 bits (169), Expect = 1e-12
 Identities = 17/67 (25%), Positives = 28/67 (41%), Gaps = 8/67 (11%)

Query: 546 AAYHGDL--------YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
            A +           ++ +  I AGAD N  D D  +PL LA       ++ +L++ G D
Sbjct: 132 IASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD 191

Query: 598 INLKGNS 604
             +   S
Sbjct: 192 PTIYNKS 198

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.5 bits (163), Expect = 6e-12
 Identities = 17/59 (28%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 546 AAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA   ++  ++ L+   G++ ++ D DG++P+ LAA  G  E++ +LIQ+G  +     
Sbjct: 286 AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA 344

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.5 bits (163), Expect = 7e-12
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK---GVDINLKG 602
           A        +  L++AGADP   +   RS LH AA+     +M +++       DI    
Sbjct: 173 AVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELD 232

Query: 603 N 603
            
Sbjct: 233 R 233

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 65.7 bits (161), Expect = 1e-11
 Identities = 10/70 (14%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           +H +           +G+ +  +        P   + +    LH  A+ G   I   + +
Sbjct: 58  QHYSLYPN--PQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAA-GSYAITEPITR 114

Query: 594 KGVDINLKGN 603
           + V+I    +
Sbjct: 115 ESVNIIDPRH 124

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 63.4 bits (155), Expect = 5e-11
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI 598
           AA  G +  +  LI+ GA     D    +   LA +  +  I+    +   + 
Sbjct: 320 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 12/70 (17%)

Query: 546 AAYHGDLYQLEG---LIRAGADPNRT--------DYDGRSPLHLAASRGYEEIMTFLI-Q 593
            A++    Q+     L+  GA  +           Y GR+ LH AA      I+ +L+ +
Sbjct: 242 VAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE 301

Query: 594 KGVDINLKGN 603
           KG + + +  
Sbjct: 302 KGSNKDKQDE 311

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 58.4 bits (142), Expect = 3e-09
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 546 AAYHGDLYQLEGLI---RAGADPNRTDYDGRSPLHLAASRGYEE---IMTFLIQKGVDIN 599
           AA + D   +  ++   +   D    D +G + L + A     +       L++KG  ++
Sbjct: 206 AAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVD 265

Query: 600 LKGNS 604
             G +
Sbjct: 266 YDGAA 270

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 9/66 (13%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI--------QKGVD 597
               G     E + R   +     +  R+ LH  AS    E    LI          G D
Sbjct: 100 TEAAGSYAITEPITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 158

Query: 598 INLKGN 603
           +N    
Sbjct: 159 VNAMDC 164

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 9e-06
 Identities = 4/38 (10%), Positives = 7/38 (18%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           N   +    P       G + +  F             
Sbjct: 55  NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEP 92

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 69.2 bits (168), Expect = 1e-12
 Identities = 45/348 (12%), Positives = 99/348 (28%), Gaps = 24/348 (6%)

Query: 181 IRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEG 240
           +R+ +    + +    +    +      +++  +               +       +  
Sbjct: 142 LRIEQEDFKALWEKYRQYMAGLLAPPYGVMETGSNNDRIPDKENVPSEKILRAGKILRIA 201

Query: 241 YTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYV 300
                   + D  Y         K+Y      + +    +       V+ R     +   
Sbjct: 202 ILSRAPHMIRDRKY-------HLKTYRQCCVGTELVDWMIQQTS--CVHSRTQ--AVGMW 250

Query: 301 SFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE 360
              +  G     +            +F D   +               +     L L   
Sbjct: 251 QVLLEDGVLNHVDQERHFQDKYLFYRFLDDEREDAPLPTEEEKKECDEELQDTMLLLSQM 310

Query: 361 SSYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLP-GE 419
                  ++   P   R      +    +  +      S+    ++   L  E     G 
Sbjct: 311 GPDAHMRMILRKPPGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGT 370

Query: 420 VIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQ- 478
           V+  +G      Y +  G +  V I   G    V  LH    FG+++++ + P+  ++  
Sbjct: 371 VLFNQGEEGTSWYIILKGSVN-VVIYGKGV---VCTLHEGDDFGKLALVNDAPRAASIVL 426

Query: 479 VCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQS 526
             + C  LR+DK+ F  I+       R V  N ++ KE D  +  L+ 
Sbjct: 427 REDNCHFLRVDKEDFNRIL-------RDVEANTVRLKEHDQDVLVLEK 467

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Length = 469

 Score = 68.4 bits (166), Expect = 2e-12
 Identities = 30/116 (25%), Positives = 53/116 (45%), Gaps = 5/116 (4%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            ++ V  F+      + QI +  + E    G  +  +G++    Y V  G L +V + E 
Sbjct: 43  RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSL-DVKVSET 101

Query: 448 GTED---YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
            +      +  L   ++FGE SIL N P+  T+   E   LLRI+++ F  + + Y
Sbjct: 102 SSHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKY 156

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Length = 250

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 20/151 (13%), Positives = 46/151 (30%), Gaps = 10/151 (6%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
           +   +        E +           F  G  ++  G  +  + F+  GK++   I E+
Sbjct: 10  FCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFED 69

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
           G+E  + Y   NS  G++               E  R     ++S   +         ++
Sbjct: 70  GSEKLLYYAGGNSLIGKLYPT---GNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEI 126

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
             N L       ++      +   ++ +   
Sbjct: 127 FKNYLT------KVAYYARQVA-EMNTYNPT 150

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Length = 223

 Score = 65.3 bits (160), Expect = 4e-12
 Identities = 38/222 (17%), Positives = 67/222 (30%), Gaps = 44/222 (19%)

Query: 69  DNRWYRAWTKFILIWAVYSSIFTPVE--FGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCL 126
           D   +      +   A+ S I   VE            LY++D++  I    D       
Sbjct: 3   DVMEHPLVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAY---- 58

Query: 127 AYRDSQTYRLICKRTPIALRYLRSSFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRV 186
                   R      P    Y++ + + ++ + +P  L+    G    +     +RL R 
Sbjct: 59  --------RAYKSGDP--AGYVKKT-LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRF 107

Query: 187 RKVSQFFHKMEKDIRINYMFSR---IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTW 243
            ++     +  K +      +       L    +      A   Y +    P        
Sbjct: 108 LRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYIVEYPDPNS------ 161

Query: 244 IGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV 285
                               KS   +++ +VVT TTVGYGDV
Sbjct: 162 -----------------SI-KSVFDALWWAVVTATTVGYGDV 185

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Length = 220

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 21/143 (14%), Positives = 41/143 (28%), Gaps = 8/143 (5%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
           +    PL+   ++     I   L  +    G +I         L  V  G+L    + + 
Sbjct: 4   FENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDE 63

Query: 448 GTEDYVSYLHPNSS--FGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR 505
           G E  +  L            I+ +I    T++  +   L  I  + +  I+        
Sbjct: 64  GREITLYRLFDMDMCLLSASCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVAN 123

Query: 506 KVLTNLLQGKESDLRLKQLQSDI 528
                +        R   +   I
Sbjct: 124 YTNELMAT------RFSDVMWLI 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 63.0 bits (154), Expect = 2e-11
 Identities = 12/63 (19%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 546 AAYHGDLYQLEGLIRAGAD-----PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
           AA + +L     L+ A  +          Y+G++ LH+A       ++  L+ +G  ++ 
Sbjct: 44  AALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSA 103

Query: 601 KGN 603
           +  
Sbjct: 104 RAT 106

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 60.7 bits (148), Expect = 1e-10
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 546 AAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           AA   D+  L + L   G + ++    G + LH+AA     E    L++   ++  +
Sbjct: 10  AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFE 66

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMT----FLIQKGVDINLK 601
           AA  G    +  LI  GAD    D  G + LH+   +  +         L+      +LK
Sbjct: 128 AACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLK 187

Query: 602 GNSIMQ 607
              ++ 
Sbjct: 188 SLELVP 193

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 58.4 bits (142), Expect = 7e-10
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 13/71 (18%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-------------YDGRSPLHLAASRGYEEIMTFLI 592
           A  + ++  +  L+  GA  +                Y G  PL  AA  G EEI+  LI
Sbjct: 82  AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLI 141

Query: 593 QKGVDINLKGN 603
           + G DI  + +
Sbjct: 142 EHGADIRAQDS 152

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 43.0 bits (102), Expect = 1e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 572 GRSPLHLAASRG-YEEIMTFLIQKGVDINLKGNS 604
             SPL LAA     + +   L  +G +++ +G  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGAM 36

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 63.9 bits (155), Expect = 3e-11
 Identities = 28/170 (16%), Positives = 52/170 (30%), Gaps = 17/170 (10%)

Query: 438 KLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
           K      E NGT+D      P  +F        +  P         ++++       N  
Sbjct: 6   KGPSGDNENNGTDDNDRTAGPIITFTHDLTSDFLSSPL--------KIMKALPSPVVNDN 57

Query: 498 DIYFCDGRKVLTNLLQG---KESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQ 554
           +      +  L   LQ     E       L +D +   S+  +    + + +        
Sbjct: 58  EQ-----KMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEV 112

Query: 555 LEGLIRAGADPNR-TDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
            +       + N   D  G +PLH   S    E++  L++ G +     N
Sbjct: 113 NDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN 162

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 59.3 bits (143), Expect = 1e-09
 Identities = 15/83 (18%), Positives = 28/83 (33%)

Query: 521 LKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580
           + + Q+      +  +       N       L  L+         N  D +G + L++AA
Sbjct: 232 IVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAA 291

Query: 581 SRGYEEIMTFLIQKGVDINLKGN 603
             G   I+  L+  G D  +   
Sbjct: 292 RLGNISIVDALLDYGADPFIANK 314

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 53.1 bits (127), Expect = 9e-08
 Identities = 10/63 (15%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRG----YEEIMTFLIQKGVDINLK 601
                +L  ++ L++ G++    D  G S L  A               L      + L+
Sbjct: 138 LTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILE 197

Query: 602 GNS 604
            + 
Sbjct: 198 DSM 200

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580
           AA  G++  ++ L+  GADP   +  G  P+   A
Sbjct: 290 AARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 324

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 61.7 bits (150), Expect = 9e-11
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
             Y G L     L         +++ G +PL LAA  G  EI   ++Q+     
Sbjct: 195 HMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
            A      Y G S LH+A  +   + +  L++ G D++L+   
Sbjct: 80  NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACG 122

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.0 bits (135), Expect = 7e-09
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 16/74 (21%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD-------------YDGRSPLHLAASRGYEEIMTFLI 592
           A     L  ++ L+  GAD +                Y G  PL LAA     +++T+L+
Sbjct: 97  AIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLL 156

Query: 593 QKGV---DINLKGN 603
           +       +    +
Sbjct: 157 ENPHQPASLEATDS 170

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 12/79 (15%), Positives = 19/79 (24%), Gaps = 23/79 (29%)

Query: 546 AAYHG--DLYQLEGLIRAG---ADPNRTDYDGR----------------SPLHLAASRGY 584
           AA     D+     L+      A    TD  G                 S L +    G 
Sbjct: 143 AACTKQWDVVTY--LLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGL 200

Query: 585 EEIMTFLIQKGVDINLKGN 603
            ++   L        +  +
Sbjct: 201 LQMGARLCPTVQLEEISNH 219

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 41.3 bits (97), Expect = 5e-04
 Identities = 12/66 (18%), Positives = 18/66 (27%), Gaps = 11/66 (16%)

Query: 545 SAAYHGDLYQLEGLI--------RAGADPNRTDYDGRSPLHLAA---SRGYEEIMTFLIQ 593
           S    G   +L GL+                    G++ L  A      G    +  L+Q
Sbjct: 8   SVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ 67

Query: 594 KGVDIN 599
              D  
Sbjct: 68  IDKDSG 73

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Length = 243

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 18/153 (11%)

Query: 389 IEKVPLFKGCSSEFINQIV----------IRLHEEFFLPGEVIMEKGNVVDQLYFVCLGK 438
              VP            +                E F   + I   G+  +++YF+  G 
Sbjct: 12  SGLVPRGSHMIVTQDKALANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGA 71

Query: 439 LEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPY--TVQVCELCRLLRIDKQSFTNI 496
           ++   + E G E  V+ L  NS FG +S+L                  LL    +     
Sbjct: 72  VKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRFYHAVAFTPVELLSAPIEQVEQA 131

Query: 497 IDIYFCDGRKVLTNLLQGKESDLRLKQLQSDIT 529
           +         +L  L        R+ Q +  I 
Sbjct: 132 LKENPELSMLMLRGLSS------RILQTEMMIE 158

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Length = 230

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 15/114 (13%), Positives = 36/114 (31%), Gaps = 1/114 (0%)

Query: 386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE 445
              +          +  I + +   H   +     +   G+    LY+V  G +  +  E
Sbjct: 10  TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEE 69

Query: 446 ENGTEDYVSYLHPNSSFGEVSILC-NIPQPYTVQVCELCRLLRIDKQSFTNIID 498
           ++  E  + Y       GE+ +   +  +   ++    C L  I  +    +  
Sbjct: 70  DDDRELVLGYFGSGEFVGEMGLFIESDTREVILRTRTQCELAEISYERLQQLFQ 123

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Length = 220

 Score = 59.6 bits (145), Expect = 3e-10
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 15/151 (9%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            +    L +  +SE  + ++    E+ +    ++       + ++ V  G++  V +   
Sbjct: 5   RLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRV-RVYLAYE 63

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV 507
             E  ++ L     F   +          +Q  E   +L  D ++F NI+  +      +
Sbjct: 64  DKEFTLAILEAGDIFCTHT-------RAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNM 116

Query: 508 LTNLLQGKESDLRLKQLQSDITFHISKHEAE 538
           +  L         LK   + I   +   +A 
Sbjct: 117 VKVLGD------LLKNSLTIIN-GLVFKDAR 140

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 59.0 bits (143), Expect = 9e-10
 Identities = 17/81 (20%), Positives = 28/81 (34%), Gaps = 17/81 (20%)

Query: 535 HEAELALKVNSAAYHGDLYQLEGLIRAGAD-----------PNRTDYDGRSPLHLAASRG 583
            +A L L         D   L  L+                   + Y G++ LH+A  R 
Sbjct: 59  LKAMLNLHNG----QNDTIAL--LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERR 112

Query: 584 YEEIMTFLIQKGVDINLKGNS 604
              ++T L++ G D+    N 
Sbjct: 113 NMTLVTLLVENGADVQAAANG 133

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFL 591
           A    ++  +  L+  GAD                   Y G  PL LAA      I+ FL
Sbjct: 108 AIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFL 167

Query: 592 IQKG---VDINLKGN 603
           +Q      DI+ + +
Sbjct: 168 LQNSWQPADISARDS 182

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 14/65 (21%), Positives = 26/65 (40%)

Query: 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594
                  K  ++ Y+  L     L         T+  G +PL LAAS G   ++ +++Q+
Sbjct: 196 DNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR 255

Query: 595 GVDIN 599
            +   
Sbjct: 256 EIHEP 260

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.7 bits (111), Expect = 8e-06
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 11/71 (15%)

Query: 546 AAYHGDLYQLEGLIRA-------GADPNRTDYD-GRSPLHLA---ASRGYEEIMTFLIQK 594
           A    +  +LE L+           D    D + G++ L  A      G  + +  L+  
Sbjct: 20  AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79

Query: 595 GVDINLKGNSI 605
               +     +
Sbjct: 80  ARKTDSLKQFV 90

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 12/72 (16%)

Query: 546 AAYHGDLYQLEGLIRAG---ADPNRTDYDGRSPLHLAASRGYEEI---------MTFLIQ 593
           AA    L  ++ L++     AD +  D  G + LH         +            ++ 
Sbjct: 155 AACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILI 214

Query: 594 KGVDINLKGNSI 605
            G  ++      
Sbjct: 215 LGAKLHPTLKLE 226

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 6/51 (11%), Positives = 13/51 (25%), Gaps = 7/51 (13%)

Query: 561 AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-------KGVDINLKGNS 604
             A         R  +  A ++   + +  L+        +  D   K   
Sbjct: 2   VSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE 52

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 3r65_A 3ous_A 3ldd_A Length = 82

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 257 FREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA 316
           F  I    S+  S+Y + VT+ TVGYGD        M F    +   +   A  +  +  
Sbjct: 21  FHFIEGE-SWTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLE 79

Query: 317 LIV 319
            ++
Sbjct: 80  FLI 82

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 57.9 bits (140), Expect = 2e-09
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFL 591
           A      + +E L+  GAD +                 Y G  PL LAA      I+ +L
Sbjct: 100 AIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159

Query: 592 IQKG---VDINLKGN 603
            + G    D+  + +
Sbjct: 160 TENGHKQADLRRQDS 174

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 13/72 (18%), Positives = 21/72 (29%), Gaps = 7/72 (9%)

Query: 535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPN-------RTDYDGRSPLHLAASRGYEEI 587
           H                    + L+   A            + DG SPL +AA  G   I
Sbjct: 181 HALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGI 240

Query: 588 MTFLIQKGVDIN 599
              +I++ +   
Sbjct: 241 FQHIIRREIADA 252

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 52.9 bits (127), Expect = 9e-08
 Identities = 10/41 (24%), Positives = 21/41 (51%)

Query: 563 ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           +      Y G++ LH+A  R  +  +  L++KG D++ +  
Sbjct: 84  SPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 43.6 bits (103), Expect = 9e-05
 Identities = 14/70 (20%), Positives = 22/70 (31%), Gaps = 12/70 (17%)

Query: 546 AAYHGDLYQLEGLIRAG---ADPNRTDYDGRSPLHLAASRGYE---------EIMTFLIQ 593
           AA     + +  L   G   AD  R D  G + LH   +             ++   L+ 
Sbjct: 147 AACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLI 206

Query: 594 KGVDINLKGN 603
           K   +    N
Sbjct: 207 KCAKLFPDTN 216

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 40.5 bits (95), Expect = 9e-04
 Identities = 11/73 (15%), Positives = 20/73 (27%), Gaps = 9/73 (12%)

Query: 540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDY----DGRSPLHLAA---SRGYEEIMTFLI 592
            +   S      L  L  L+         ++     G++ L  A    S G  + +  L+
Sbjct: 12  IVSRGSPDGLEGL--LSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILL 69

Query: 593 QKGVDINLKGNSI 605
                       I
Sbjct: 70  DIAEKTGNMREFI 82

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Length = 336

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 3/93 (3%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 324
           S+  S+Y + VT+ TVGYGD        M F +  +   +   A  +  +   ++   + 
Sbjct: 45  SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLINREQM 104

Query: 325 EKFRDKMTDLMK---YINRNRLGRDIRDQIIGH 354
           +          +       +    +   ++ G 
Sbjct: 105 KLMGLIDVAKSRHVVICGWSESTLECLRELRGS 137

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Length = 222

 Score = 55.7 bits (135), Expect = 5e-09
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 17/145 (11%)

Query: 390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT 449
            +  +     S            +    G ++       + ++ V  G+L  V +     
Sbjct: 3   PRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRL-RVYLVGEER 61

Query: 450 EDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT 509
           E  + YL     F   S          V+  E   +   D ++F   +         ++ 
Sbjct: 62  EISLFYLTSGDMFCMHS-------GCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIA 114

Query: 510 NLLQGKESDLRLKQLQ---SDITFH 531
            L +       L        D+ FH
Sbjct: 115 ILGR------ALTSCMRTIEDLMFH 133

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 57.3 bits (138), Expect = 6e-09
 Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 14/128 (10%)

Query: 488 IDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNS-- 545
                  N + +     ++ +   L G ++  +++QL      H +++  +L    +   
Sbjct: 30  FQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKG 89

Query: 546 ---------AAYHGDLYQLE---GLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
                    AA  G    L+    L+ +         +      LAA  G+  ++  L +
Sbjct: 90  IKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 149

Query: 594 KGVDINLK 601
                 + 
Sbjct: 150 LAPTEIMA 157

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 12/85 (14%)

Query: 531 HISKHEAELALK----VNSAAYHGDLYQLEGL--------IRAGADPNRTDYDGRSPLHL 578
                     L+    + +     D   L+ +        I+A A       D    L L
Sbjct: 266 VFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRL 325

Query: 579 AASRGYEEIMTFLIQKGVDINLKGN 603
           A   G +     L+     + L   
Sbjct: 326 ALRLGNQGACALLLSIPSVLALTKA 350

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 47.2 bits (112), Expect = 8e-06
 Identities = 6/46 (13%), Positives = 11/46 (23%), Gaps = 2/46 (4%)

Query: 558 LIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           L              +      LAA  G+  ++  L +        
Sbjct: 147 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATA 192

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 44.2 bits (104), Expect = 9e-05
 Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 3/57 (5%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDY--DGRSPLHLAASR-GYEEIMTFLIQKGVDIN 599
           AA +G L+ L  L              +       AA   G+  ++ FL+   V + 
Sbjct: 170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA 226

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 55.9 bits (134), Expect = 1e-08
 Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 516 ESDLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSP 575
            +        +D+ +     +    L    A     L   E L++ GA+ N+ D  GR P
Sbjct: 214 PTMADALAHGADVNWVNGGQDNATPL--IQATAANSLLACEFLLQNGANVNQADSAGRGP 271

Query: 576 LHLAASRGYEEIMTFLIQKGVDINLK 601
           LH A   G+  +    +++G D+  +
Sbjct: 272 LHHATILGHTGLACLFLKRGADLGAR 297

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 42.1 bits (98), Expect = 4e-04
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           A   G        ++ GAD    D +GR PL +A      +I+T L  
Sbjct: 275 ATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRL 322

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Length = 207

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 19/134 (14%), Positives = 50/134 (37%), Gaps = 10/134 (7%)

Query: 399 SSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHP 458
             + +++++   H   +     I+  G+  + L+F+  G +  +  +++G E  + YL+ 
Sbjct: 2   KLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNS 61

Query: 459 NSSFGEVSILCNI----PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG 514
              FGE+ +         +   V+    C +  I    F  +          + + +   
Sbjct: 62  GDFFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD- 120

Query: 515 KESDLRLKQLQSDI 528
                RL++    +
Sbjct: 121 -----RLRKTTRKV 129

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 53.5 bits (128), Expect = 6e-08
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
             A    L  ++ +I+ G   +    DG + LH AA     + +  L++    +   
Sbjct: 199 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 255

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 48.4 bits (115), Expect = 3e-06
 Identities = 11/48 (22%), Positives = 21/48 (43%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           AA +     L+ L++  A     +  G + L +A  + ++E    L Q
Sbjct: 233 AALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Length = 97

 Score = 49.1 bits (117), Expect = 1e-07
 Identities = 18/66 (27%), Positives = 29/66 (43%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 324
             I ++Y SVVT+TTVGYGD         +F ++Y+   + L    I  +   +   S  
Sbjct: 32  RPIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 91

Query: 325 EKFRDK 330
                +
Sbjct: 92  SNLVPR 97

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Length = 514

 Score = 53.5 bits (128), Expect = 1e-07
 Identities = 35/287 (12%), Positives = 91/287 (31%), Gaps = 50/287 (17%)

Query: 91  TPVEFGFFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS 150
           + + +      +   ++++ +  I F F+ ++            R      P    +  +
Sbjct: 227 STIGYQQSTSFTDPFFIVETLCIIWFSFEFLV------------RFFA--CPSKAGFFTN 272

Query: 151 SF-IIDLFSCMPW--DLIYKASGRKEA--------VRYLLWIRLYRVRKVSQFFHKMEKD 199
              IID+ + +P+   +    S +           V+    +R+ R+ K+S+    ++  
Sbjct: 273 IMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRRVVQIFRIMRILRIFKLSRHSKGLQIL 332

Query: 200 IRINYM-FSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFR 258
            +        +  LI        + +   Y+        Q                    
Sbjct: 333 GQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERDSQ-------------------- 372

Query: 259 EIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318
               + S   + + +VV+MTTVGYGD+    +   +   +     ++  A  +  + +  
Sbjct: 373 ----FPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNF 428

Query: 319 VKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTE 365
                 E   ++    ++  +  ++      +         +S Y E
Sbjct: 429 NYFYHRETEGEEQAQYLQVTSSPKIPSSPDLKKSRSASTISKSDYME 475

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Length = 238

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 17/125 (13%), Positives = 36/125 (28%), Gaps = 7/125 (5%)

Query: 410 LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC 469
           +  + F   E+I  + +  +   F+  G  +   I ENGT   + Y           I  
Sbjct: 18  IKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYYKGAFVIMSGFIDT 77

Query: 470 NIPQPY--TVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRLKQLQ-S 526
                Y     + E      I       ++             + Q  +  +     + +
Sbjct: 78  ETSVGYYNLEVISEQATAYVIKINELKELLSKNL----THFFYVFQTLQKQVSYSLAKFN 133

Query: 527 DITFH 531
           D + +
Sbjct: 134 DFSIN 138

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 8/56 (14%), Positives = 22/56 (39%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           +     L+ ++ L++   + ++    G + LH        E +  L++    I + 
Sbjct: 179 SVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIA 234

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 50.0 bits (119), Expect = 8e-07
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
                +   L+ L+R  A     +  G +PL +A    +E     L Q
Sbjct: 212 CCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 259

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Length = 194

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 4/142 (2%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           I  +  F   + E    +      +     E +++ G +    YFV  G L    I+E G
Sbjct: 9   INHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKG 68

Query: 449 TEDYVSYLHPNSSFGEV-SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY--FCD-G 504
            E    +   N    +  +     P  + +Q  E C LL I      N+ +         
Sbjct: 69  IEQTTQFAIENWWLSDYMAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYF 128

Query: 505 RKVLTNLLQGKESDLRLKQLQS 526
           R V        +   + + + S
Sbjct: 129 RLVYQKSFAAAQLRSKFQHMYS 150

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Length = 114

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 16/66 (24%), Positives = 28/66 (42%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 324
             I ++Y SVVT+TTVG G+         +F ++Y+   + L    I  +   +   S  
Sbjct: 49  RPIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQLPSIL 108

Query: 325 EKFRDK 330
                +
Sbjct: 109 SNLVPR 114

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Length = 301

 Score = 50.8 bits (121), Expect = 6e-07
 Identities = 21/118 (17%), Positives = 41/118 (34%), Gaps = 2/118 (1%)

Query: 252 YSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLI 311
            +  D  E     S+  + + SV TM T+GYG +  +       + +     M+  A   
Sbjct: 69  LACGDVIENARPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAA 128

Query: 312 GNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGR--DIRDQIIGHLRLQYESSYTEAS 367
             + A   + +    F  +M           + R  ++R + I    +      +E S
Sbjct: 129 SLIYARFTRPTAGVLFSSRMVISDFEGKPTLMMRLANLRIEQIIEADVHLVLVRSEIS 186

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Length = 148

 Score = 48.0 bits (114), Expect = 7e-07
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 6/94 (6%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKT 324
             + ++Y SVVT+TTVG G+         VF ++Y    + +G  L+      +    + 
Sbjct: 52  RPLDALYFSVVTLTTVGDGNFSPQTDFGKVFTILY----IFIGIGLVFGFIHKLAVNVQL 107

Query: 325 EKF--RDKMTDLMKYINRNRLGRDIRDQIIGHLR 356
                  K       +        I  ++  H R
Sbjct: 108 PSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSR 141

>2byv_E RAP guanine nucleotide exchange factor 4; EPAC2, CAMP-GEF2, CAMP, cyclic nucleotide, regulation, auto-inhibition, CDC25 homology domain; 2.7A {Mus musculus} Length = 999

 Score = 49.5 bits (117), Expect = 3e-06
 Identities = 32/153 (20%), Positives = 65/153 (42%), Gaps = 6/153 (3%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
            ++ V  F+      + QI +  + E    G  +  +G++    Y V  G L+    E +
Sbjct: 43  RLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS 102

Query: 448 GTED--YVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIID---IYFC 502
             +D   +  L   ++FGE SIL N P+  T+   E   LLRI+++ F  + +    Y  
Sbjct: 103 SHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMA 161

Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKH 535
                   +++   ++ R+   ++  +  I + 
Sbjct: 162 GLLAPPYGVMETGSNNDRIPDKENVPSEKILRA 194

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Length = 202

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 3/93 (3%)

Query: 406 IVIRLHEEFFLPGEVIMEKGN--VVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG 463
           +        F  G+VI+  G     D+ Y V  G +    ++E G    +  + P   FG
Sbjct: 1   MTQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFG 60

Query: 464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNI 496
           E ++     + Y  +     RL  + +     +
Sbjct: 61  EEALFGQ-ERIYFAEAATDVRLEPLPENPDPEL 92

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Length = 103

 Score = 43.6 bits (103), Expect = 1e-05
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321
            SY  +++ SV T TTVGYGD + V               M  G  +   +TA +   
Sbjct: 39  ISYPDAIWWSVETATTVGYGDRYPVTEEGRKV----AEQVMKAGIEVFALVTAALATD 92

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Length = 195

 Score = 44.5 bits (106), Expect = 2e-05
 Identities = 16/79 (20%), Positives = 31/79 (39%), Gaps = 1/79 (1%)

Query: 415 FLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQP 474
           F   E I  +G     LY +  G +  V +  +G    + ++ P   FGE + L      
Sbjct: 4   FARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGEEA-LEGKAYR 62

Query: 475 YTVQVCELCRLLRIDKQSF 493
           YT +      +  ++ ++ 
Sbjct: 63  YTAEAMTEAVVQGLEPRAM 81

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Length = 139

 Score = 43.0 bits (101), Expect = 4e-05
 Identities = 19/97 (19%), Positives = 42/97 (43%), Gaps = 7/97 (7%)

Query: 264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSK 323
            +Y  +++ SV T TTVGYGD++ V L   +         M+ G    G +TA +     
Sbjct: 39  ITYPRALWWSVETATTVGYGDLYPVTLWGRLV----AVVVMVAGITSFGLVTAALATWF- 93

Query: 324 TEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYE 360
             + +++    ++  +  +   +   +    L  +++
Sbjct: 94  VGREQERRGHFVR--HSEKAAEEAYTRTTRALHERFD 128

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 45.3 bits (107), Expect = 4e-05
 Identities = 11/57 (19%), Positives = 22/57 (38%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
             A    L  ++ +I+ G   +    DG + LH AA     + +  L++    +   
Sbjct: 180 KVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTV 236

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Length = 340

 Score = 44.0 bits (103), Expect = 8e-05
 Identities = 20/147 (13%), Positives = 51/147 (34%), Gaps = 17/147 (11%)

Query: 184 YRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTW 243
              R ++  F  +   + + + F+ ++  + V          I++ +A           +
Sbjct: 25  ETYRYLTDIFTTL---VDLKWRFNLLI-FVMVYTVTWLFFGMIWWLIA-----------Y 69

Query: 244 IGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFD 303
           I          +    +     ++++   S+ T TT+GYG     +  +    +I +   
Sbjct: 70  IRGDMDHIEDPSWTPCVTNLNGFVSAFLFSIETETTIGYGYRVITD--KCPEGIILLLIQ 127

Query: 304 MILGAYLIGNMTALIVKGSKTEKFRDK 330
            +LG+ +   M   +       K R +
Sbjct: 128 SVLGSIVNAFMVGCMFVKISQPKKRAE 154

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Length = 155

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 25/147 (17%), Positives = 46/147 (31%), Gaps = 34/147 (23%)

Query: 173 EAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLAT 232
           + +  +L   L R+ K+    H      R     + ++ ++ +        + +      
Sbjct: 22  KHMPPMLSGLLARLVKLLLGRHGSALHWRAAGAATVLLVIVLL------AGSYLAVLAER 75

Query: 233 TLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLRE 292
             P                             SY  +++ SV T TTVGYGD++ V L  
Sbjct: 76  GAPGAA------------------------LISYPDALWWSVETATTVGYGDLYPVTLWG 111

Query: 293 MVFIMIYVSFDMILGAYLIGNMTALIV 319
                      M+ G    G + A + 
Sbjct: 112 RCV----AVVVMVAGITSYGLVFAAVA 134

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Length = 122

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 4/56 (7%)

Query: 264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV 319
            +Y  +++ +  T TTV YGD++ V L   +         M+ G    G +TA + 
Sbjct: 60  ITYPRALWWACETATTVAYGDLYPVTLWGRLV----AVVVMVAGITSFGLVTAALA 111

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Length = 166

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 6/88 (6%)

Query: 264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG-- 321
            +Y  +++ SV T TTVGYGD++ V L   +         M+ G    G +TA +     
Sbjct: 66  ITYPRALWWSVETATTVGYGDLYPVTLWGRLV----AVVVMVAGITSFGLVTAALATWFV 121

Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRD 349
            + ++ + +     +        R  R 
Sbjct: 122 GQEQQQQQQFVRHSEKAAEEAYTRTTRA 149

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Length = 321

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 11/112 (9%)

Query: 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321
           F   +  + + SV T+ TVGYGD+H   +       + +   M   A   G     + + 
Sbjct: 75  FPAGFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQP 134

Query: 322 SKTEK-----------FRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESS 362
            K  +            RD    LM  +   R    +  QI   L    ++ 
Sbjct: 135 KKRAETLMFSEHAVISMRDGKLTLMFRVGNLRNSHMVSAQIRCKLLKSRQTP 186

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Length = 343

 Score = 40.9 bits (95), Expect = 8e-04
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 17/144 (11%)

Query: 189 VSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLK 248
           ++  F     DIR  YM    +      L    +   IF+ +A             G L+
Sbjct: 32  IADMFTTC-VDIRWRYML---LLFSLAFLVSWLLFGLIFWLIAL----------IHGDLE 77

Query: 249 MGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGA 308
                      +     ++ +   S+ T TT+GYG        E    +  V    I+G 
Sbjct: 78  NPGGDDTFKPCVLQVNGFVAAFLFSIETQTTIGYGFRCVTE--ECPLAVFMVVVQSIVGC 135

Query: 309 YLIGNMTALIV-KGSKTEKFRDKM 331
            +   M   I+ K ++ +K    +
Sbjct: 136 IIDSFMIGAIMAKMARPKKRAQTL 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	608
3beh_A	355	MLL3241 protein; transmembrane protein, membrane p	100.0
2ptm_A	198	Hyperpolarization-activated (IH) channel; ION chan	99.98
3ukn_A	212	Novel protein similar to vertebrate potassium VOL	99.97
3bpz_A	202	Potassium/sodium hyperpolarization-activated cycli	99.97
1orq_C	223	Potassium channel; voltage-dependent, KVAP, FAB co	99.95
2r9r_B	514	Paddle chimera voltage gated potassium channel KV;	99.93
4f8a_A	160	Potassium voltage-gated channel subfamily H membe;	99.84
2a9h_A	155	Voltage-gated potassium channel; potassium channel	99.82
3mdp_A	142	Cyclic nucleotide-binding domain (CNMP-BD) protei;	99.79
2pqq_A	149	Putative transcriptional regulator; APC7345, strep	99.78
3idb_B	161	CAMP-dependent protein kinase type II-beta regulat	99.78
3gyd_A	187	CNMP-BD protein, cyclic nucleotide-binding domain;	99.78
3ocp_A	139	PRKG1 protein; serine/threonine kinase, TF2I and I	99.77
2z69_A	154	DNR protein; beta barrel, dimerization helix, tran	99.76
3dn7_A	194	Cyclic nucleotide binding regulatory protein; stru	99.73
4ev0_A	216	Transcription regulator, CRP family; CAMP binding,	99.73
2ih3_C	122	Voltage-gated potassium channel; ION channel D-ami	99.73
3fx3_A	237	Cyclic nucleotide-binding protein; helix_TURN_heli	99.72
3e97_A	231	Transcriptional regulator, CRP/FNR family; YP_6044	99.72
4h33_A	137	LMO2059 protein; bilayers, KVLM, lipidic cubic pha	99.71
1vp6_A	138	CNBD, cyclic-nucleotide binding domain of mesorhiz	99.71
3dv8_A	220	Transcriptional regulator, CRP/FNR family; cyclic	99.71
3d0s_A	227	Transcriptional regulatory protein; CAMP receptor	99.71
1zyb_A	232	Transcription regulator, CRP family; NP_813211.1,	99.7
1wgp_A	137	Probable cyclic nucleotide-gated ION channel 6; cy	99.7
3dkw_A	227	DNR protein; CRP-FNR, HTH, beta barrel, dimerizati	99.69
3pna_A	154	CAMP-dependent protein kinase type I-alpha regula	99.69
3iwz_A	230	CAP-like, catabolite activation-like protein; XCC,	99.68
3rvy_A	285	ION transport protein; tetrameric ION channel, vol	99.68
2gau_A	232	Transcriptional regulator, CRP/FNR family; structu	99.68
3vou_A	148	ION transport 2 domain protein, voltage-gated SOD	99.68
4ava_A	333	Lysine acetyltransferase; allosteric regulation, d	99.67
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.66
3shr_A	299	CGMP-dependent protein kinase 1; cyclic nucleotide	99.65
3ryp_A	210	Catabolite gene activator; CAMP receptor protein (	99.65
2d93_A	134	RAP guanine nucleotide exchange factor 6; CNMP_bin	99.64
3eff_K	139	Voltage-gated potassium channel; FULL length KCSA,	99.63
2oz6_A	207	Virulence factor regulator; winged helix, helix-tu	99.62
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.61
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.61
1o5l_A	213	Transcriptional regulator, CRP family; TM1171, str	99.61
3kcc_A	260	Catabolite gene activator; helix-turn-helix, CAMP,	99.59
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.59
2fmy_A	220	COOA, carbon monoxide oxidation system transcripti	99.59
2qcs_B	291	CAMP-dependent protein kinase type I-alpha regula	99.58
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.58
1ft9_A	222	Carbon monoxide oxidation system transcription reg	99.57
3tnp_B	416	CAMP-dependent protein kinase type II-beta regula	99.55
3of1_A	246	CAMP-dependent protein kinase regulatory subunit;	99.55
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.55
3e6c_C	250	CPRK, cyclic nucleotide-binding protein; CPRK, hal	99.55
4din_B	381	CAMP-dependent protein kinase type I-beta regulat	99.55
2bgc_A	238	PRFA; bacterial infection, human pathogen, transcr	99.49
2k1e_A	103	Water soluble analogue of potassium channel, KCSA;	99.49
2q67_A	114	Potassium channel protein; inverted teepee, helix	99.49
3la7_A	243	Global nitrogen regulator; activator, DNA-binding,	99.48
1o7f_A	469	CAMP-dependent RAP1 guanine-nucleotide exchange fa	99.48
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.44
3ldc_A	82	Calcium-gated potassium channel MTHK; transmembran	99.44
3ouf_A	97	Potassium channel protein; ION channel, membrane,	99.43
3cf6_E	694	RAP guanine nucleotide exchange factor (GEF) 4; EP	99.41
3b02_A	195	Transcriptional regulator, CRP family; structural	99.36
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.27
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.26
4f7z_A	999	RAP guanine nucleotide exchange factor 4; cyclic n	99.25
2zcw_A	202	TTHA1359, transcriptional regulator, FNR/CRP famil	99.25
1xl4_A	301	Inward rectifier potassium channel; integral membr	99.22
3pjs_K	166	KCSA, voltage-gated potassium channel; ION channel	99.18
2qks_A	321	KIR3.1-prokaryotic KIR channel chimera; G-protein	99.18
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.17
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.17
4dxw_A	229	Navrh, ION transport protein; tetrameric, voltage-	99.16
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.14
1p7b_A	333	Integral membrane channel and cytosolic domains; t	99.12
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.1
3um7_A	309	Potassium channel subfamily K member 4; potassium	99.08
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.07
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.07
3sya_A	340	G protein-activated inward rectifier potassium CH;	99.05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.05
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.03
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.02
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.02
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.01
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.0
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.0
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	98.98
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	98.98
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	98.97
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	98.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	98.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	98.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	98.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	98.95
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	98.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	98.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	98.92
3v30_A	172	DNA-binding protein rfxank; structural genomics co	98.92
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	98.92
3um7_A	309	Potassium channel subfamily K member 4; potassium	98.92
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	98.91
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	98.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	98.91
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	98.91
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.9
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	98.9
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	98.89
3spc_A	343	Inward-rectifier K+ channel KIR2.2; PIP, membrane	98.89
3v30_A	172	DNA-binding protein rfxank; structural genomics co	98.89
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	98.89
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	98.89
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	98.88
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	98.88
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	98.87
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	98.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.87
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	98.86
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	98.85
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	98.85
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	98.85
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	98.84
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	98.84
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	98.84
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	98.83
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	98.83
2etb_A	256	Transient receptor potential cation channel subfam	98.83
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	98.83
3ukm_A	280	Potassium channel subfamily K member 1; membrane p	98.83
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	98.83
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	98.82
3jxi_A	260	Vanilloid receptor-related osmotically activated p	98.82
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.82
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	98.82
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	98.81
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	98.81
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	98.8
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	98.79
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	98.79
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	98.78
2rfa_A	232	Transient receptor potential cation channel subfa	98.78
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	98.78
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	98.78
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	98.78
2kyh_A	147	KVAP, voltage-gated potassium channel; ION channel	98.78
1ors_C	132	Potassium channel; voltage-dependent, voltage sens	98.78
2pnn_A	273	Transient receptor potential cation channel subfa	98.77
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.76
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	98.76
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	98.76
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	98.76
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	98.75
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	98.74
3hra_A	201	Ankyrin repeat family protein; structural protein;	98.74
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	98.71
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	98.71
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	98.7
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.7
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	98.7
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	98.7
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	98.69
3hra_A	201	Ankyrin repeat family protein; structural protein;	98.68
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	98.67
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	98.66
2rfa_A	232	Transient receptor potential cation channel subfa	98.64
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	98.63
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	98.63
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.62
2etb_A	256	Transient receptor potential cation channel subfam	98.62
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	98.61
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	98.6
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	98.59
3jxi_A	260	Vanilloid receptor-related osmotically activated p	98.58
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.57
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	98.55
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	98.53
2pnn_A	273	Transient receptor potential cation channel subfa	98.52
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	98.51
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	98.51
1lnq_A	336	MTHK channels, potassium channel related protein;	98.5
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.49
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	98.49
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	98.48
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	98.42
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	98.4
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	98.34
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	98.34
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	98.34
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	98.0
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	97.5
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	87.44

>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*

Probab=100.00  E-value=5.1e-41  Score=340.49  Aligned_cols=339  Identities=17%  Similarity=0.148  Sum_probs=133.7

Q ss_pred             ECCCChhHHHHHHHHHHHHHHHHHHhchheeec--cCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHH
Q 007323           66 FHPDNRWYRAWTKFILIWAVYSSIFTPVEFGFF--RGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPI  143 (608)
Q Consensus        66 ~~P~s~~~~~w~~~~~~~~~~~~~~~p~~~~f~--~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i  143 (608)
                      +.|.|+...   .+++++++.+++++.+.....  ......+..++.++.++|++|+++++..+..  .           
T Consensus         3 ~~p~s~~f~---~~~~~~i~ls~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~f~~e~~~r~~~~~~--~-----------   66 (355)
T 3beh_A            3 VLPFLRIYA---PLNAVLAAPGLLAVAALTIPDMSGRSRLALAALLAVIWGAYLLQLAATLLKRRA--G-----------   66 (355)
T ss_dssp             ----CCSSS---SHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--C-----------
T ss_pred             CCchhHHHH---HHHHHHHHHHHHHHHHHcccchhhhHHHHHHHHHhHHHHHHHHHHHHhcccccc--c-----------
Confidence            367887644   344444444444444432111  1111123445666666789999999854311  0           


Q ss_pred             HHHHhhc-cchhHhhhh-ccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhhHHHHHHHHHHHHHH
Q 007323          144 ALRYLRS-SFIIDLFSC-MPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFF---HKMEKDIRINYMFSRIVKLIAVELY  218 (608)
Q Consensus       144 ~~~yl~~-~f~iDl~s~-lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~  218 (608)
                       .+|.++ |.++|++++ +|++..+. .+ ..   .+|++|++|++|+.++.   +.+.....  ....++..++..+++
T Consensus        67 -~~~~~~~~~i~Dl~~i~~p~~~~~~-~~-~~---~~r~lr~~R~lrl~r~~~~~~~l~~~l~--~~~~~l~~~~~~~~~  138 (355)
T 3beh_A           67 -VVRDRTPKIAIDVLAVLVPLAAFLL-DG-SP---DWSLYCAVWLLKPLRDSTFFPVLGRVLA--NEARNLIGVTTLFGV  138 (355)
T ss_dssp             -SSCCCHHHHHHHHHHHHHHHHHHHS-CC-SG---GGGGGGGGGGSHHHHTCSSHHHHHHHHH--HTHHHHHHHHHHHHH
T ss_pred             -ceeccCcchHHHHHHHHHHHHHHHh-cc-ch---hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH
Confidence             345555 569999999 68876542 11 22   23444444444444443   33332221  223356667777788


Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHH
Q 007323          219 CSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMI  298 (608)
Q Consensus       219 ~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~  298 (608)
                      ++|++||++|.++...++                        +.+..|.+|+||+++||||+||||+.|.|..|++++++
T Consensus       139 ~~~~~a~~~~~~e~~~~~------------------------~~f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~  194 (355)
T 3beh_A          139 VLFAVALAAYVIERDIQP------------------------EKFGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGA  194 (355)
T ss_dssp             HHHHHHHHHHHHHTTTCH------------------------HHHSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCC------------------------cccccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHH
Confidence            899999999998753211                        22446889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhccccHHHHHhhCCHHHHH
Q 007323          299 YVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEASVLQDIPISIRA  378 (608)
Q Consensus       299 ~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~~~~~~~~l~~lp~~Lr~  378 (608)
                      ++++|++++++++|.+++.+.+.         +++                  +++.                       
T Consensus       195 ~~~~g~~~~~~~~~~i~~~~~~~---------~~~------------------~~~~-----------------------  224 (355)
T 3beh_A          195 VMMSGIGIFGLWAGILATGFYQE---------VRR------------------GDFV-----------------------  224 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------HHH------------------HHHH-----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------HHH------------------Hhhc-----------------------
Confidence            99999999999999998766431         100                  0000                       


Q ss_pred             HHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCC
Q 007323          379 KISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHP  458 (608)
Q Consensus       379 ~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~  458 (608)
                           ...+.++++|+|+++++++++++...++.+.++|||+|+++||+.+++|+|.+|.++++..+       ...+++
T Consensus       225 -----~~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~~~-------~~~l~~  292 (355)
T 3beh_A          225 -----RNWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGP  292 (355)
T ss_dssp             -----HHHC-----------------------------------------------------------------------
T ss_pred             -----ccchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEeCCCcCceEEEEEeeEEEEEECC-------eeEECC
Confidence                 02467889999999999999999999999999999999999999999999999999998743       257899


Q ss_pred             CCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          459 NSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       459 G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      |++|||.+++.+.|+.++++|.++|+++.+++++|.++++++|++...+.+.+.++
T Consensus       293 G~~fGe~~~l~~~~~~~~~~A~~~~~l~~i~~~~f~~ll~~~p~~~~~l~~~l~~r  348 (355)
T 3beh_A          293 GAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  348 (355)
T ss_dssp             --------------------------------------------------------
T ss_pred             CCEEeehHHhCCCCcceEEEECccEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888776653

>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus}

Probab=99.98  E-value=7.6e-31  Score=243.26  Aligned_cols=190  Identities=21%  Similarity=0.472  Sum_probs=179.1

Q ss_pred             CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc-cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCC
Q 007323          321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS  399 (608)
Q Consensus       321 ~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~-~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~  399 (608)
                      ++++.+|+++++.+++||+++++|++||.||++|++|.|+. ..++++++++||++||.++..+.+.++++++|+|++++
T Consensus         4 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~Lr~~i~~~~~~~~l~~~~~f~~l~   83 (198)
T 2ptm_A            4 DSSSRQYREKLKQVEEYMQYRKLPSHLRNKILDYYEYRYRGKMFDERHIFREVSESIRQDVANYNCRDLVASVPFFVGAD   83 (198)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCSHHHHHHSCHHHHHHHHHHHTHHHHHHCGGGTTCC
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCcchhcCC
Confidence            35678999999999999999999999999999999999975 45688999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEE
Q 007323          400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV  479 (608)
Q Consensus       400 ~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a  479 (608)
                      ++++..++..++.+.|.||++|+++||+++++|||.+|.|+++.  .+|+  ++..+++|++||+.+++.+.++.++++|
T Consensus        84 ~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~~~~--~~g~--~~~~l~~G~~fGe~~~~~~~~~~~~~~a  159 (198)
T 2ptm_A           84 SNFVTRVVTLLEFEVFQPADYVIQEGTFGDRMFFIQQGIVDIIM--SDGV--IATSLSDGSYFGEICLLTRERRVASVKC  159 (198)
T ss_dssp             HHHHHHHHHHCEEEEECTTCEEECTTSCCSEEEEEEECCEEEEC--TTSC--EEEEECTTCEESCHHHHHSSCCSSEEEE
T ss_pred             HHHHHHHHHhccceeeCCCCEEEECCCcCcEEEEEEeCEEEEEe--cCCe--EEEEecCCCEechHHHcCCCccceEEEE
Confidence            99999999999999999999999999999999999999999986  5665  7889999999999999999999999999


Q ss_pred             eceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       480 ~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      .++|+++.+++++|.++++.+|.+...+.+.+..+
T Consensus       160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~r  194 (198)
T 2ptm_A          160 ETYCTLFSLSVQHFNQVLDEFPAMRKTMEEIAVRR  194 (198)
T ss_dssp             SSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHTC
T ss_pred             eeEEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHH
Confidence            99999999999999999999999999888877663

>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B

Probab=99.97  E-value=3.3e-31  Score=248.57  Aligned_cols=193  Identities=20%  Similarity=0.425  Sum_probs=173.6

Q ss_pred             HHHHc-CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc--cccHHHHHhhCCHHHHHHHHHHHhHhhhccc
Q 007323          316 ALIVK-GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES--SYTEASVLQDIPISIRAKISQTLYLPYIEKV  392 (608)
Q Consensus       316 ~~~~~-~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~--~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~  392 (608)
                      +++++ +.++.+|+++++.+++||+++++|++||.||++|++|.|+.  +.++++++++||++||.++..+++..++ ++
T Consensus         2 ~ii~~~~~~~~~~~~~~~~i~~ym~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~~il~~Lp~~L~~~i~~~~~~~l~-~~   80 (212)
T 3ukn_A            2 AMDQRMYSRRSLYHTRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLKDFPDELRADIAMHLNKELL-QL   80 (212)
T ss_dssp             ----------CHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCTGGGCCCCCTTTTSCHHHHHHHHTTCCCGGG-GS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCCCCHHHHHHHcCHHHHHHHHHHHHHHHH-hc
Confidence            45555 56678999999999999999999999999999999999964  4568889999999999999999998877 89


Q ss_pred             ccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC-
Q 007323          393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-  471 (608)
Q Consensus       393 ~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~-  471 (608)
                      |+|++++++++..++..++.+.|.||++|+++||+++++|+|.+|.|+++.   +|  .++..+++|++||+.+++.+. 
T Consensus        81 ~~f~~l~~~~l~~l~~~~~~~~~~~ge~I~~~G~~~~~ly~I~~G~v~v~~---~~--~~~~~l~~G~~fGe~~~~~~~~  155 (212)
T 3ukn_A           81 PLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQAIYFVCSGSMEVLK---DN--TVLAILGKGDLIGSDSLTKEQV  155 (212)
T ss_dssp             GGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEES---SS--CEEEEECTTCEEECSCCSSSSC
T ss_pred             HHhhcCCHHHHHHHHHHhheEEeCCCCEEEECCCcccEEEEEEecEEEEEE---CC--eEEEEecCCCCcCcHHhccCCC
Confidence            999999999999999999999999999999999999999999999999986   44  578999999999999999988 


Q ss_pred             -CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          472 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       472 -~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                       ++.++++|.++|+++.+++++|.++++.+|.+...+++.+..+
T Consensus       156 ~~~~~~v~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~~  199 (212)
T 3ukn_A          156 IKTNANVKALTYCDLQYISLKGLREVLRLYPEYAQKFVSEIQHD  199 (212)
T ss_dssp             CBBCSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             CCcceEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHHh
Confidence             8999999999999999999999999999999999998888663

>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A*

Probab=99.97  E-value=3.7e-30  Score=239.36  Aligned_cols=188  Identities=23%  Similarity=0.453  Sum_probs=176.1

Q ss_pred             CchhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc-cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCC
Q 007323          321 GSKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCS  399 (608)
Q Consensus       321 ~~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~-~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~  399 (608)
                      +.++.+|+++++.+++||+++++|++||.||++|++|.|+. ..++++++++||+.||.++..+.+.++++++|+|.+++
T Consensus         5 ~~~~~~~~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~e~~il~~l~~~L~~~i~~~~~~~~l~~~~~f~~l~   84 (202)
T 3bpz_A            5 DSSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREKIVNFNCRKLVASMPLFANAD   84 (202)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHTCHHHHTSC
T ss_pred             CHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCCCHHHHHHHcCHHHHHHHHHHHHHHHHhcCCchhcCC
Confidence            45678999999999999999999999999999999999974 46789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEE
Q 007323          400 SEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQV  479 (608)
Q Consensus       400 ~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a  479 (608)
                      ++++..++..++.+.|.||++|+++|++++++|||.+|.|+++.  .+|++   ..+++|++||+.+++.+.++.++++|
T Consensus        85 ~~~l~~l~~~~~~~~~~~ge~I~~~g~~~~~ly~I~~G~v~v~~--~~g~~---~~l~~G~~fGe~~~~~~~~~~~~v~a  159 (202)
T 3bpz_A           85 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNKE---MKLSDGSYFGEICLLTRGRRTASVRA  159 (202)
T ss_dssp             HHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEC--TTSCC---EEEETTCEECHHHHHHCSBCSSEEEE
T ss_pred             HHHHHHHHHhCCceEECCCCEEEECCCcCCeEEEEeccEEEEEE--CCCeE---EEEcCCCEeccHHHhcCCCcccEEEE
Confidence            99999999999999999999999999999999999999999975  56665   36899999999999999999999999


Q ss_pred             eceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          480 CELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       480 ~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      .++|+++.+++++|.++++.+|.+...+.+.+..
T Consensus       160 ~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~~~~  193 (202)
T 3bpz_A          160 DTYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID  193 (202)
T ss_dssp             SSCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred             eeEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999888877655

>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A

Probab=99.95  E-value=8.4e-28  Score=226.24  Aligned_cols=207  Identities=20%  Similarity=0.189  Sum_probs=152.0

Q ss_pred             HHHHHHHHHHHHHHHHhchhee--eccCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc
Q 007323           75 AWTKFILIWAVYSSIFTPVEFG--FFRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF  152 (608)
Q Consensus        75 ~w~~~~~~~~~~~~~~~p~~~~--f~~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f  152 (608)
                      .|+.+++++++++.+.+.+...  +..+....+..+|.+++++|++|+++|++++..              +++|+|+ +
T Consensus         9 ~f~~~i~~lil~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~iF~~e~~lr~~~~~~--------------~~~y~~~-~   73 (223)
T 1orq_C            9 LVELGVSYAALLSVIVVVVECTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVKK-T   73 (223)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHTTSC--------------HHHHHHH-H
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHHHHHHccccc--------------HHHHHHH-h
Confidence            4888888888888887766543  333345567899999999999999999998732              3899998 8


Q ss_pred             hhHhhhhccHHHHHhhcCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          153 IIDLFSCMPWDLIYKASGR---KEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYY  229 (608)
Q Consensus       153 ~iDl~s~lP~~~~~~~~~~---~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~  229 (608)
                      ++|+++++|++........   ...++.+|++|++|+.|+.+..++..+.........++..++..+++++|++||++|+
T Consensus        74 iiDllailP~~~~~~~~~~~~~~~~lr~lRllRllR~~r~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  153 (223)
T 1orq_C           74 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSKFLSAIADAADKIRFYHLFGAVMLTVLYGAFAIYI  153 (223)
T ss_dssp             HHHCTTHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999876531111   2245566666666666655422222111111111124666777788889999999998


Q ss_pred             HhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHH
Q 007323          230 LATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAY  309 (608)
Q Consensus       230 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~  309 (608)
                      ++...++                        +...+|.+|+||+++||||+||||+.|.|..|++++++++++|+.++++
T Consensus       154 ~e~~~~~------------------------~~~~~~~~s~y~~~~t~tTvGyGdi~P~t~~~~~~~~~~~~~G~~~~~~  209 (223)
T 1orq_C          154 VEYPDPN------------------------SSIKSVFDALWWAVVTATTVGYGDVVPATPIGKVIGIAVMLTGISALTL  209 (223)
T ss_dssp             TTSSSTT------------------------CSCCSHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCcC------------------------CCcCcchhHHHhHHhHHhccCCCCCCCCCHhHHHHHHHHHHHHHHHHHH
Confidence            7642111                        1123588999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHc
Q 007323          310 LIGNMTALIVK  320 (608)
Q Consensus       310 ~i~~i~~~~~~  320 (608)
                      ++|.+++.+++
T Consensus       210 ~i~~i~~~~~~  220 (223)
T 1orq_C          210 LIGTVSNMFQK  220 (223)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999998764

>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*

Probab=99.93  E-value=2.4e-26  Score=240.51  Aligned_cols=229  Identities=15%  Similarity=0.187  Sum_probs=163.4

Q ss_pred             cCCCcccccceEECCCC-hhHHHHHHHHHHHHHHHHHHhchhee--eccC--------------------------CCcC
Q 007323           54 LSGFRHFSRNLVFHPDN-RWYRAWTKFILIWAVYSSIFTPVEFG--FFRG--------------------------LSKN  104 (608)
Q Consensus        54 ~~~~~~~~~~~~~~P~s-~~~~~w~~~~~~~~~~~~~~~p~~~~--f~~~--------------------------~~~~  104 (608)
                      ++++|.+.+..+.+|.| ....+|+.+++++++.++++..+...  +...                          ....
T Consensus       161 ~~~~r~~lw~l~e~p~sS~~a~~f~~~~i~~Illsii~~~leT~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (514)
T 2r9r_B          161 ENEFQRQVWLLFEYPESSGPARIIAIVSVMVILISIVSFCLETLPIFRDENEDMHGGGVTFHTYSQSTIGYQQSTSFTDP  240 (514)
T ss_dssp             SCSSHHHHHHTTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHTCSTTTTSCCCCHHHHHHHHHSSCCCTTCCCH
T ss_pred             hHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccccccccchhhhH
Confidence            44566677777778875 56777888888887777776655432  1111                          1234


Q ss_pred             eehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-cchhHhhhhccHHHHHhhcC----------chh
Q 007323          105 LYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-SFIIDLFSCMPWDLIYKASG----------RKE  173 (608)
Q Consensus       105 ~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~f~iDl~s~lP~~~~~~~~~----------~~~  173 (608)
                      +.++|.++.++|++|+++|++++..              .++|+++ |.++|+++++|+++.+....          ...
T Consensus       241 l~~ie~i~~~iFtiE~ilR~~~~~~--------------k~~Y~ks~wniiDli~iip~~i~l~~~~~~~~~~~~~~~~~  306 (514)
T 2r9r_B          241 FFIVETLCIIWFSFEFLVRFFACPS--------------KAGFFTNIMNIIDIVAIIPYYVTIFLTESNKSVLQFQNVRR  306 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSC--------------SSSSTTSHHHHHHHHTTHHHHHHHHHHHTSCSHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCc--------------HHHHHhchhHHHHHHHHHHHHHHHHhhhccccchhhhhHHH
Confidence            6789999999999999999987631              1589999 66999999999987654321          122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCC
Q 007323          174 AVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDY  252 (608)
Q Consensus       174 ~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~  252 (608)
                      .++++|++|++|++|+.++...++.... +......+..+++.++++++++|+++|+++...++                
T Consensus       307 ~lrvlRllRvlRilkL~r~~~~l~~l~~tl~~s~~~l~~ll~~l~i~~~if~~~~~~~e~~~~~----------------  370 (514)
T 2r9r_B          307 VVQIFRIMRILRIFKLSRHSKGLQILGQTLKASMRELGLLIFFLFIGVILFSSAVYFAEADERD----------------  370 (514)
T ss_dssp             HHHHHHHHGGGGGGGGGGSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTT----------------
T ss_pred             HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeccCCC----------------
Confidence            4555666666666666665555544322 22223345556666677788889888876432111                


Q ss_pred             CcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          253 SYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       253 ~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                              +.+..|..|+||+++||||+||||+.|.|..+++++++++++|++++++++|.+.+.+..
T Consensus       371 --------~~F~s~~~a~y~~~vT~TTvGYGDi~P~t~~gr~f~~~~~l~G~~~l~l~iavI~~~f~~  430 (514)
T 2r9r_B          371 --------SQFPSIPDAFWWAVVSMTTVGYGDMVPTTIGGKIVGSLCAIAGVLTIALPVPVIVSNFNY  430 (514)
T ss_dssp             --------CSCSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred             --------ccccchhhhhheeeeEEEecccCCCCCCCcchHhhehhHHHHHHHHHHHHHHHHHHHHHH
Confidence                    112357799999999999999999999999999999999999999999999999887765

>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus}

Probab=99.84  E-value=1.4e-20  Score=167.66  Aligned_cols=144  Identities=24%  Similarity=0.391  Sum_probs=126.8

Q ss_pred             HHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEe
Q 007323          365 EASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGI  444 (608)
Q Consensus       365 ~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~  444 (608)
                      .+++++.||++||.++..+.+.++++++|+|++++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++. 
T Consensus         5 ~~~il~~lp~~l~~~i~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~-   83 (160)
T 4f8a_A            5 TEKVLQICPKDMRADICVHLNRKVFKEHPAFRLASDGCLRALAMEFQTVHCAPGDLIYHAGESVDSLCFVVSGSLEVIQ-   83 (160)
T ss_dssp             ----------CCHHHHHHHHTHHHHTTCGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEE-
T ss_pred             hHHHHHHCCHHHHHHHHHHHHHHHHHhCHhhhhCCHHHHHHHHHhceeeeeCCCCEEEeCCCCccEEEEEEeeEEEEEE-
Confidence            4568999999999999999999999999999999999999999999999999999999999999999999999999976 


Q ss_pred             ccCCceeeeEEeCCCCeecchhhhcC--CCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          445 EENGTEDYVSYLHPNSSFGEVSILCN--IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       445 ~~~g~~~~~~~l~~G~~fGe~~~~~~--~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                          ++..+..+++|++||+.+++.+  .++.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus        84 ----~~~~~~~~~~G~~fG~~~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  150 (160)
T 4f8a_A           84 ----DDEVVAILGKGDVFGDVFWKEATLAQSCANVRALTYCDLHVIKRDALQKVLEFYTAFSHSFSRNLIL  150 (160)
T ss_dssp             ----TTEEEEEEETTCEEECCTTTCSSCCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHCCC
T ss_pred             ----CCEEEEEecCCCEeCcHHHhcCcccceEEEEEECCceEEEEEcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                2347899999999999999988  6899999999999999999999999999999999998888743

>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1

Probab=99.82  E-value=6e-20  Score=158.71  Aligned_cols=126  Identities=17%  Similarity=0.147  Sum_probs=70.1

Q ss_pred             cchhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          151 SFIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIRINYMFSRIVKLIAVELYCSHIAACIFYYL  230 (608)
Q Consensus       151 ~f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~h~~ac~~~~~  230 (608)
                      +-++|+++++|+            +|.+|++|++|++ +.|+..      .....  .+...++.+++++.++|+++|++
T Consensus        15 ~~~~dli~~lp~------------lr~lRllRi~ril-l~r~~~------~l~~~--~~~~~~~~~~~~i~~~a~~~~~~   73 (155)
T 2a9h_A           15 EGRGRLIKHMPP------------MLSGLLARLVKLL-LGRHGS------ALHWR--AAGAATVLLVIVLLAGSYLAVLA   73 (155)
T ss_dssp             --------------------------------------------------CCHHH--HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHH------------HHHHHHHHHHHHH-HHHHHH------HHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence            348999999997            4555666666655 333311      11111  12222333444455677777777


Q ss_pred             hccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHH
Q 007323          231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYL  310 (608)
Q Consensus       231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~  310 (608)
                      +...++                        +....|.+|+||+++|+|||||||+.|.|..+++++++++++|+.+++++
T Consensus        74 E~~~~~------------------------~~~~s~~~a~y~s~vTltTVGYGDi~P~t~~gr~~~~~~~l~Gv~~~a~~  129 (155)
T 2a9h_A           74 ERGAPG------------------------AALISYPDALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSYGLV  129 (155)
T ss_dssp             HTTSSC------------------------SSTTSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccCCC------------------------CccCcccceeheeeeeeecccCCCCCCCChhHHHHHHHHHHHHHHHHHHH
Confidence            643211                        11245889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 007323          311 IGNMTALIVKG  321 (608)
Q Consensus       311 i~~i~~~~~~~  321 (608)
                      ++.+++.+.+.
T Consensus       130 ~~~i~~~~~~~  140 (155)
T 2a9h_A          130 FAAVATWFVGR  140 (155)
T ss_dssp             HHHHHHHHHSC
T ss_pred             HHHHHHHHHHH
Confidence            99999998873

>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens}

Probab=99.79  E-value=5.1e-19  Score=153.99  Aligned_cols=128  Identities=16%  Similarity=0.236  Sum_probs=115.2

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceee---eEEeCCCCee
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY---VSYLHPNSSF  462 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~---~~~l~~G~~f  462 (608)
                      .+.++++|+|++++++.+..++..++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.+   +..+++|++|
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~~~~G~~f   84 (142)
T 3mdp_A            5 PERLRVYRFFASLTDEQLKDIALISEEKSFPTGSVIFKENSKADNLMLLLEGGVELFYSNGGAGSAANSTVCSVVPGAIF   84 (142)
T ss_dssp             TTGGGGSHHHHTSCHHHHHHHHHTEEEEEECTTCEEECTTSBCCEEEEEEESCEEEECC---------CEEEEECTTCEE
T ss_pred             HHHHhhCchhccCCHHHHHHHHHhhcEEecCCCCEEEeCCCCCCcEEEEEeCEEEEEEECCCCCceEeeeEEEecCCCEe
Confidence            4688999999999999999999999999999999999999999999999999999998888998888   9999999999


Q ss_pred             cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      |+.+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus        85 G~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~l~~  135 (142)
T 3mdp_A           85 GVSSLIKPYHYTSSARATKPVRVVDINGARLREMSENNQALGQVLMNNVAA  135 (142)
T ss_dssp             CGGGSSTTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             chHHHcCCCCceEEEEECCcEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988888765

>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3}

Probab=99.78  E-value=3.5e-18  Score=149.99  Aligned_cols=128  Identities=19%  Similarity=0.299  Sum_probs=122.3

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      .++++++|+|..++++++..++..++.+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++..+..+++|++||+.
T Consensus         4 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   83 (149)
T 2pqq_A            4 DDVLRRNPLFAALDDEQSAELRASMSEVTLARGDTLFHEGDPGDRLYVVTEGKVKLHRTSPDGRENMLAVVGPSELIGEL   83 (149)
T ss_dssp             GGGGTSSTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSEECEEEEEEESCEEEEEECTTSSEEEEEEECTTCEESGG
T ss_pred             HHHhhhChhhhcCCHHHHHHHHHhceEEEeCCCCEEECCCCCCCeEEEEEecEEEEEEECCCCcEEEEEEcCCcCEechH
Confidence            46789999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +++.+.++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~  131 (149)
T 2pqq_A           84 SLFDPGPRTATGTALTEVKLLALGHGDLQPWLNVRPEVATALLRAVAR  131 (149)
T ss_dssp             GGTSCEECSSEEEESSCEEEEEEEGGGHHHHHHHCTHHHHHHHHHHHH
T ss_pred             HhcCCCCcceEEEEccceEEEEEeHHHHHHHHHhCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888877765

>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B*

Probab=99.78  E-value=8.6e-19  Score=156.13  Aligned_cols=129  Identities=22%  Similarity=0.346  Sum_probs=119.0

Q ss_pred             HHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCC
Q 007323          380 ISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPN  459 (608)
Q Consensus       380 i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G  459 (608)
                      .......++++++|+|++++++.+..++..++.+.|.+|++|+++|++.+++|+|.+|.|+++. +.+|++..+..+++|
T Consensus        31 ~~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~-~~~g~~~~~~~~~~G  109 (161)
T 3idb_B           31 DQRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNR  109 (161)
T ss_dssp             HHHHHHHHHHTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEE-EETTEEEEEEEEESC
T ss_pred             HHHHHHHHHHhCCHhhhcCCHHHHHHHHHhcceeEeCCCCEEEeCCCCCcEEEEEEeCEEEEEE-cCCCCeEEEEEcCCC
Confidence            3345567899999999999999999999999999999999999999999999999999999998 789999999999999


Q ss_pred             CeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHH
Q 007323          460 SSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT  509 (608)
Q Consensus       460 ~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~  509 (608)
                      ++||+.+++.+.++.++++|.++|+++.+++++|.++++++|...+.++.
T Consensus       110 ~~fGe~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~  159 (161)
T 3idb_B          110 GSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMYE  159 (161)
T ss_dssp             CEECGGGGTCCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHTSCCC--
T ss_pred             CEechHHHHcCCCcccEEEECCCeEEEEEeHHHHHHHHHHCHHHHHHHHh
Confidence            99999999999999999999999999999999999999999987655443

>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT}

Probab=99.78  E-value=3.5e-18  Score=156.09  Aligned_cols=136  Identities=17%  Similarity=0.190  Sum_probs=126.2

Q ss_pred             HHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeC
Q 007323          378 AKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLH  457 (608)
Q Consensus       378 ~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~  457 (608)
                      .+...+...++++++|+|+.++++.+..++..++.+.|++|++|+++|++.+.+|+|.+|.|+++..+++|++.++..++
T Consensus        30 ~~~~~~~~~~~L~~~~~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~ly~I~~G~v~v~~~~~~g~~~~~~~~~  109 (187)
T 3gyd_A           30 ADKYFEEILEIVNKIKLFGDFSNEEVRYLCSYMQCYAAPRDCQLLTEGDPGDYLLLILTGEVNVIKDIPNKGIQTIAKVG  109 (187)
T ss_dssp             GGGGHHHHHHHHTTCCSSCCCCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEEETTTEEEEEEEEE
T ss_pred             cHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEEeCCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCeEEEEEcc
Confidence            33444556789999999999999999999999999999999999999999999999999999999998999999999999


Q ss_pred             CCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       458 ~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +|++||+.+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus       110 ~G~~fGe~~~l~~~~~~~~v~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~  165 (187)
T 3gyd_A          110 AGAIIGEMSMIDGMPRSASCVASLPTDFAVLSRDALYQLLANMPKLGNKVLIRLLQ  165 (187)
T ss_dssp             TTCEESHHHHHHCCCCSSEEEEEEEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCeeeeHHHhCCCCeeEEEEECCCeEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999888855443

>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A*

Probab=99.77  E-value=1.4e-18  Score=150.65  Aligned_cols=131  Identities=24%  Similarity=0.272  Sum_probs=117.1

Q ss_pred             hCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCce
Q 007323          371 DIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTE  450 (608)
Q Consensus       371 ~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~  450 (608)
                      ++|..+|.+...+...++++++++|+.++++.+..++..++.+.|.+|++|+++|++.+.+|+|.+|.|++..   +|+ 
T Consensus         7 ~~p~~~k~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~---~g~-   82 (139)
T 3ocp_A            7 TLPFYPKSPQSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---EGV-   82 (139)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHCTTTTTSCHHHHHHHHHHCEEEEECSSCEEECTTSCCCEEEEEEECCEEEEE---TTE-
T ss_pred             cCCCCCCCHHHHHHHHHHHhcCHhhhcCCHHHHHHHHHhcEEEecCCCCEEEeCCCcCCEEEEEEeCEEEEEE---CCE-
Confidence            6788888888888889999999999999999999999999999999999999999999999999999999965   553 


Q ss_pred             eeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHH
Q 007323          451 DYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK  506 (608)
Q Consensus       451 ~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  506 (608)
                       .+..+.+|++||+.+++.+.++.++++|.++|+++.+++++|.++++++|...++
T Consensus        83 -~~~~~~~G~~fGe~~~l~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~r~  137 (139)
T 3ocp_A           83 -KLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHT  137 (139)
T ss_dssp             -EEEEECTTCEESCHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHHTC-------
T ss_pred             -EEEEeCCCCEeccHHHHCCCCcceEEEECcceEEEEEcHHHHHHHHhhChHhhhh
Confidence             7889999999999999999999999999999999999999999999999987654

>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa}

Probab=99.76  E-value=6.1e-18  Score=149.37  Aligned_cols=128  Identities=14%  Similarity=0.228  Sum_probs=117.9

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      .++++++++|..++++.+..++..++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.
T Consensus        11 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   90 (154)
T 2z69_A           11 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA   90 (154)
T ss_dssp             HHHHTTSTTTTTSCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEESCEEEECCCC-----CCEEECTTEEESGG
T ss_pred             HHHhhcChhhcCCCHHHHHHHHhhCcEEEecCCCEEecCCCccceEEEEEeCEEEEEEECCCCCEEEEEEccCCCeeccH
Confidence            56799999999999999999999999999999999999999999999999999999988888999999999999999999


Q ss_pred             hhhcCCC-cccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          466 SILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       466 ~~~~~~~-~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +++.+.+ +.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus        91 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~l~~~~~~  139 (154)
T 2z69_A           91 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST  139 (154)
T ss_dssp             GGGSSCSBCSSEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhccCCCCCceEEEEccceEEEEECHHHHHHHHHHChHHHHHHHHHHHH
Confidence            9999988 99999999999999999999999999999999999888766

>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}

Probab=99.73  E-value=2.6e-17  Score=151.45  Aligned_cols=128  Identities=19%  Similarity=0.203  Sum_probs=120.4

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      ..+++++++|.+++++++..+...++.+.|++|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+.
T Consensus         6 ~~l~~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~l~~~G~~~~~~y~i~~G~v~~~~~~~~G~e~~~~~~~~g~~~ge~   85 (194)
T 3dn7_A            6 TALINHIRKFIFLTDEDAGTLSAFFQLKKVRKKETLLKTGEICRINYFVVKGCLRLFFIDEKGIEQTTQFAIENWWLSDY   85 (194)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHhCEEEEEcCCCEEECCCCeeeEEEEeecCeEEEEEECCCCCEEEEEEccCCcEEeeh
Confidence            45778899999999999999999999999999999999999999999999999999998899999999999999999987


Q ss_pred             -hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          466 -SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       466 -~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                       +++.+.|+.++++|.++|+++.+++++|.++++++|.+...+...+..
T Consensus        86 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~  134 (194)
T 3dn7_A           86 MAFQKQQPADFYIQSVENCELLSITYTEQENLFERIPALERYFRLVYQK  134 (194)
T ss_dssp             HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHHHHCTTHHHHHHHHHHH
T ss_pred             HHHhcCCCCceEEEEECCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHH
Confidence             678889999999999999999999999999999999999887776655

>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}

Probab=99.73  E-value=3.3e-17  Score=153.63  Aligned_cols=125  Identities=22%  Similarity=0.349  Sum_probs=117.8

Q ss_pred             hcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhh
Q 007323          389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL  468 (608)
Q Consensus       389 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~  468 (608)
                      |+++|+|++++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+++|++.++..+++|++||+.+++
T Consensus         1 L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~   80 (216)
T 4ev0_A            1 MKGSPLFHGLAPEEVDLALSYFQRRLYPQGKPIFYQGDLGQALYLVASGKVRLFRTHLGGQERTLALLGPGELFGEMSLL   80 (216)
T ss_dssp             ---CGGGTTCCHHHHHHHHTTCEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECSSSCEEEEEEECTTCEECHHHHH
T ss_pred             CCCChhhcCCCHHHHHHHHHhheEEEeCCCCEEEeCCCCCCEEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEeehhhc
Confidence            46899999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             cCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          469 CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       469 ~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      .+.++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus        81 ~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  125 (216)
T 4ev0_A           81 DEGERSASAVAVEDTELLALFREDYLALIRRLPLVAHNLAALLAR  125 (216)
T ss_dssp             HCCBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCCcceEEEEcCCEEEEEEcHHHHHHHHHHCcHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999888877765

>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...

Probab=99.73  E-value=1.2e-17  Score=138.87  Aligned_cols=56  Identities=20%  Similarity=0.298  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .|.+|+||+++|+||+||||++|.|..+++++++++++|+.+++++++.+++.+.+
T Consensus        61 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~  116 (122)
T 2ih3_C           61 TYPRALWWACETATTVAYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG  116 (122)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchhheeeeeeeeecCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999998865

>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*

Probab=99.72  E-value=2.7e-17  Score=156.54  Aligned_cols=131  Identities=16%  Similarity=0.227  Sum_probs=124.3

Q ss_pred             HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (608)
Q Consensus       383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f  462 (608)
                      ....++++++|+|..++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++|
T Consensus         7 ~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~   86 (237)
T 3fx3_A            7 EAQKAIARNSLLIRSLPEQHVDALLSQAVWRSYDRGETLFLQEEKAQAIHVVIDGWVKLFRMTPTGSEAVVSVFTRGESF   86 (237)
T ss_dssp             HHHHHHHTTSHHHHTSCHHHHHHHHTTCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEEECTTSCEEEEEEEETTEEE
T ss_pred             HHHHHHHhCCHhhccCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEeCCCCEe
Confidence            34467899999999999999999999999999999999999999999999999999999998899999999999999999


Q ss_pred             cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      |+.+++.+.++.++++|.++|+++.+++++|.+++.++|.+...+++.+..
T Consensus        87 G~~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  137 (237)
T 3fx3_A           87 GEAVALRNTPYPVSAEAVTPCEVMHIPSPVFVSLMRRDPEICISILATTFG  137 (237)
T ss_dssp             CHHHHHHTCCCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             chHHHhcCCCCCceEEECCceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888877765

>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}

Probab=99.72  E-value=3.5e-17  Score=155.11  Aligned_cols=128  Identities=18%  Similarity=0.265  Sum_probs=120.9

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      .++++++|+|..++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+++|++.++..+++|++||+.
T Consensus         5 ~~~L~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~   84 (231)
T 3e97_A            5 LDDLKRSPLFQNVPEDAMREALKVVTERNFQPDELVVEQDAEGEALHLVTTGVVRVSRVSLGGRERVLGDIYAPGVVGET   84 (231)
T ss_dssp             HHHHHTSGGGTTCCHHHHHHHHHTEEEEEECTTCBCCCTTCTTTCEEEECSSEEEEEEECC--CEEEEEEEESSEEESTT
T ss_pred             HHHHhcChhhccCCHHHHHHHHHhcEEEEECCCCEEEeCCCCCCeEEEEEecEEEEEEECCCCceEEEEecCCCCEEeeH
Confidence            46789999999999999999999999999999999999999999999999999999998899999999999999999999


Q ss_pred             hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +++.+.++.++++|.++|+++.+++++|.+++..+|.+...+++.+..
T Consensus        85 ~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  132 (231)
T 3e97_A           85 AVLAHQERSASVRALTPVRTLMLHREHFELILRRHPRVLWNLAEMLAR  132 (231)
T ss_dssp             TTTCCCCCCEEEEESSCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHhCCCCceEEEEECCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988887766

>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A

Probab=99.71  E-value=2.3e-17  Score=140.18  Aligned_cols=92  Identities=18%  Similarity=0.290  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHH-HhhCCC
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKGSKTEKFRDKMTDLMKY-INRNRL  343 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~~-m~~~~l  343 (608)
                      .|.+|+||+++|+|||||||++|.|..|++++++++++|+.+++++++.+++.+.+....++.+++.+...+. .+..++
T Consensus        43 ~~~~a~y~~~~T~tTvGyGDi~P~t~~gr~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  122 (137)
T 4h33_A           43 NYPDALWWAIVTATTVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRCKKPTNSSTQRANKITQLISETPDL  122 (137)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTC--------------------
T ss_pred             CHHHHHHHHHHHHHcccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence            3789999999999999999999999999999999999999999999999999887633333333333333333 333455


Q ss_pred             CHHHHHHHHHHHH
Q 007323          344 GRDIRDQIIGHLR  356 (608)
Q Consensus       344 ~~~l~~rv~~y~~  356 (608)
                      +++.+..++++++
T Consensus       123 ~~~~i~~l~~~l~  135 (137)
T 4h33_A          123 TKEEIAVVEQFLT  135 (137)
T ss_dssp             -------------
T ss_pred             cHHHHHHHHHHHh
Confidence            5666666666554

>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A

Probab=99.71  E-value=8.6e-17  Score=139.05  Aligned_cols=123  Identities=22%  Similarity=0.309  Sum_probs=114.3

Q ss_pred             hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (608)
Q Consensus       385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe  464 (608)
                      ..++++++|+|..++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+       ...+++|++||+
T Consensus         9 ~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~-------~~~~~~G~~~G~   81 (138)
T 1vp6_A            9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVATPN-------PVELGPGAFFGE   81 (138)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECSSS-------CEEECTTCEECH
T ss_pred             HHHHHHhChhhhcCCHHHHHHHHHhhcEEEeCCCCEEEeCCCCcceEEEEEeeEEEEEeCC-------cceECCCCEeee
Confidence            4578999999999999999999999999999999999999999999999999999998632       247899999999


Q ss_pred             hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      .+++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+.++
T Consensus        82 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~~~~r  131 (138)
T 1vp6_A           82 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  131 (138)
T ss_dssp             HHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hHhccCCCceeEEEECCCEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999998887663

>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}

Probab=99.71  E-value=1e-16  Score=150.67  Aligned_cols=127  Identities=15%  Similarity=0.118  Sum_probs=120.2

Q ss_pred             hhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe--ecc
Q 007323          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS--FGE  464 (608)
Q Consensus       387 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~--fGe  464 (608)
                      ++++++|+|..+++++++.+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+++|++.++..+++|++  ||+
T Consensus         3 ~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~~~g~   82 (220)
T 3dv8_A            3 SFENYFPLWNDLNTAQKKLISDNLITQHVKKGTIIHNGNMDCTGLLLVKSGQLRTYILSDEGREITLYRLFDMDMCLLSA   82 (220)
T ss_dssp             --CCSCGGGGTSCHHHHHHHHTTCEEEEECTTCEEEEGGGCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESGGG
T ss_pred             chHHhChhhhcCCHHHHHHHHhhCceEEeCCCCEEECCCCCcceEEEEEeceEEEEEECCCCCEEEEEecCCCCeeehhH
Confidence            578999999999999999999999999999999999999999999999999999999899999999999999999  799


Q ss_pred             hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      .+++.+.|+.++++|.++|+++.+++++|.+++.++|.+...++..+..
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~p~~~~~~~~~l~~  131 (220)
T 3dv8_A           83 SCIMRSIQFEVTIEAEKDTDLWIIPAEIYKGIMKDSAPVANYTNELMAT  131 (220)
T ss_dssp             GGGCTTCCCCCEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCceEEEEeeeeEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888777755

>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*

Probab=99.71  E-value=2.9e-17  Score=155.25  Aligned_cols=128  Identities=20%  Similarity=0.327  Sum_probs=122.2

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      .++++++|+|..++++++..+...++.+.|++|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+.+|++||+.
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~   84 (227)
T 3d0s_A            5 DEILARAGIFQGVEPSAIAALTKQLQPVDFPRGHTVFAEGEPGDRLYIIISGKVKIGRRAPDGRENLLTIMGPSDMFGEL   84 (227)
T ss_dssp             HHHHTTSSTTSSCCSSTTHHHHTTSCEEEECTTCEEECTTCCCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCH
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCeEEEeCCCCEEEcCCCcCCEEEEEEeeEEEEEEECCCCcEEEEEEecCCCEEeeH
Confidence            46789999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +++.+.++.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus        85 ~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  132 (227)
T 3d0s_A           85 SIFDPGPRTSSATTITEVRAVSMDRDALRSWIADRPEISEQLLRVLAR  132 (227)
T ss_dssp             HHHSCSCCSSEEEESSCEEEEEEEHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred             HHcCCCCceeEEEEcccEEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888877765

>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2

Probab=99.70  E-value=1.1e-16  Score=151.78  Aligned_cols=129  Identities=17%  Similarity=0.145  Sum_probs=122.6

Q ss_pred             hHhhhcccccccCCCHHHHHHHHHH--ceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323          385 YLPYIEKVPLFKGCSSEFINQIVIR--LHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (608)
Q Consensus       385 ~~~~l~~~~~f~~l~~~~l~~l~~~--~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f  462 (608)
                      ....++++|+|..++++++..++..  ++.+.|++|++|+++||+.+.+|+|.+|.|+++..+.+|++.++..+++|++|
T Consensus        16 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~l~~~~~G~~f   95 (232)
T 1zyb_A           16 MFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYLI   95 (232)
T ss_dssp             HHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEEE
T ss_pred             HHHHHhcCccccCCCHHHHHHHHhhCCcEEEEECCCCEEECCCCcccEEEEEEeeEEEEEEECCCCCEEEEEEccCCCee
Confidence            4577999999999999999999998  99999999999999999999999999999999998899999999999999999


Q ss_pred             cchhhhcCCC-cccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          463 GEVSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       463 Ge~~~~~~~~-~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      |+.+++.+.+ +.++++|.++|+++.+++++|.++++++|.+...+++.+..
T Consensus        96 G~~~~~~~~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~  147 (232)
T 1zyb_A           96 EPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN  147 (232)
T ss_dssp             CGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred             eehHHhCCCCCCceEEEEccceEEEEEEHHHHHHHhccCHHHHHHHHHHHHH
Confidence            9999999988 89999999999999999999999999999999988887765

>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2

Probab=99.70  E-value=3.2e-17  Score=141.61  Aligned_cols=119  Identities=18%  Similarity=0.346  Sum_probs=108.7

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeE--EeCCCCeec
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVS--YLHPNSSFG  463 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~--~l~~G~~fG  463 (608)
                      .++++++|+|+.++++++..++..++.+.|++|++|+++||+.+.+|+|.+|.|++. .+.+|++.++.  .+.+|++||
T Consensus         5 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~-~~~~g~~~~~~~~~l~~G~~fG   83 (137)
T 1wgp_A            5 SSGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESV-TTDGGRSGFYNRSLLKEGDFCG   83 (137)
T ss_dssp             SCSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEE-CCSSCSSSSSCEEECCTTCBSS
T ss_pred             HHHHHcCcchhhCCHHHHHHHHHHheEEEeCCCCEEEeCCCCCCeEEEEEeeEEEEE-EcCCCcceeeeeeeecCCCEec
Confidence            467899999999999999999999999999999999999999999999999999965 56788887777  999999999


Q ss_pred             chhh---hcCCC------cccEEEEeceeeeEEechhhHHHHHHHhhhcHH
Q 007323          464 EVSI---LCNIP------QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGR  505 (608)
Q Consensus       464 e~~~---~~~~~------~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~  505 (608)
                      +.++   +.+.+      +.++++|.++|+++.+++++|.++++++|.+..
T Consensus        84 e~~l~~~~~~~~~~~~~~~~~~~~A~~~~~~~~i~~~~~~~l~~~~p~l~~  134 (137)
T 1wgp_A           84 DELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRSGP  134 (137)
T ss_dssp             THHHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCCTT
T ss_pred             HHHHHHHhccccccccccceeEEEEeEEEEEEEECHHHHHHHHHHCHhhHh
Confidence            9995   77775      578999999999999999999999999998753

>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}

Probab=99.69  E-value=5.1e-17  Score=153.56  Aligned_cols=128  Identities=14%  Similarity=0.228  Sum_probs=122.4

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      .++++++|+|.+++++.+..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.
T Consensus         8 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   87 (227)
T 3dkw_A            8 QQLLQSHHLFEPLSPVQLQELLASSDLVNLDKGAYVFRQGEPAHAFYYLISGCVKIYRLTPEGQEKILEVTNERNTFAEA   87 (227)
T ss_dssp             HHHHTTSTTTSSSCHHHHHHHHTSCEEEECCTTEEEECTTSBCCEEEEEEESCEECCBCCGGGCCBCCCEECTTEEESCT
T ss_pred             HHHHhcChhhcCCCHHHHHHHHhhCEEEEECCCCEEEcCCCccceEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeH
Confidence            46889999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             hhhcCCC-cccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          466 SILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       466 ~~~~~~~-~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +++.+.| +.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus        88 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  136 (227)
T 3dkw_A           88 MMFMDTPNYVATAQAVVPSQLFRFSNKAYLRQLQDNTPLALALLAKLST  136 (227)
T ss_dssp             TTTTTCSBCSSCEEESSCCEEEEEESHHHHHHHSSCTHHHHHHHHHHHH
T ss_pred             HhcCCCCCCceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999 99999999999999999999999999999999888887765

>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B*

Probab=99.69  E-value=2.6e-16  Score=138.77  Aligned_cols=118  Identities=24%  Similarity=0.361  Sum_probs=108.5

Q ss_pred             HhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323          384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG  463 (608)
Q Consensus       384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG  463 (608)
                      ...++++++|+|..++++.+..+...++.+.|.+|++|+++|++.+++|+|.+|.|+++.   +|+  .+..+++|++||
T Consensus        35 ~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~~~--~~~~~~~G~~fG  109 (154)
T 3pna_A           35 ALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NNE--WATSVGEGGSFG  109 (154)
T ss_dssp             HHHHHHHHCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEE---TTE--EEEEECTTCEEC
T ss_pred             HHHHHHHhChhhhhCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEecEEEEEE---CCE--EEEEecCCCEee
Confidence            346789999999999999999999999999999999999999999999999999999986   443  678899999999


Q ss_pred             chhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHH
Q 007323          464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK  506 (608)
Q Consensus       464 e~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  506 (608)
                      +.+++.+.++.++++|.++|+++.+++++|.++++++|...+.
T Consensus       110 e~~~~~~~~~~~~v~A~~~~~~~~i~~~~~~~ll~~~~~~~~~  152 (154)
T 3pna_A          110 ELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRK  152 (154)
T ss_dssp             CHHHHHCCCCSSEEEESSCEEEEEEEHHHHHHHTHHHHHHC--
T ss_pred             ehHhhcCCCcceEEEECcceEEEEEeHHHHHHHHHhChHHHhh
Confidence            9999999999999999999999999999999999999876554

>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}

Probab=99.68  E-value=2.8e-16  Score=148.74  Aligned_cols=128  Identities=13%  Similarity=0.198  Sum_probs=110.4

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      ...+++.++|..+++++++.+...++.+.|++|++|+++||+.+++|+|.+|.|+++..+++|++.++..+++|++||+.
T Consensus        10 ~~~lr~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~   89 (230)
T 3iwz_A           10 TTTVRNATPSLTLDAGTIERFLAHSHRRRYPTRTDVFRPGDPAGTLYYVISGSVSIIAEEDDDRELVLGYFGSGEFVGEM   89 (230)
T ss_dssp             ------------CCHHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTSCEEEEEEECTTCEESCG
T ss_pred             hhhhhhcchhccCCHHHHHHHHHhCeEEEeCCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEEeh
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCC-CcccEEEEeceeeeEEechhhHHHHHHHh-----hhcHHHHHHHHhc
Q 007323          466 SILCNI-PQPYTVQVCELCRLLRIDKQSFTNIIDIY-----FCDGRKVLTNLLQ  513 (608)
Q Consensus       466 ~~~~~~-~~~~~~~a~~~~~l~~l~~~~~~~ll~~~-----~~~~~~il~~l~~  513 (608)
                      +++.+. ++.++++|.++|+++.+++++|.++++++     |.+...++..+..
T Consensus        90 ~~~~~~~~~~~~~~a~~~~~v~~i~~~~~~~l~~~~~~~~~p~~~~~~~~~l~~  143 (230)
T 3iwz_A           90 GLFIESDTREVILRTRTQCELAEISYERLQQLFQTSLSPDAPRILYAIGVQLSK  143 (230)
T ss_dssp             GGTSCCSBCCSEEEESSCEEEEEEEHHHHHHHHHTTTGGGHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCceeEEEEcCcEEEEEEeHHHHHHHHHHhcccCCcHHHHHHHHHHHH
Confidence            999875 78899999999999999999999999999     9988888777765

>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*

Probab=99.68  E-value=7.8e-18  Score=164.33  Aligned_cols=201  Identities=15%  Similarity=0.181  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHHHHHHHhchheee--ccCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-c
Q 007323           75 AWTKFILIWAVYSSIFTPVEFGF--FRGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-S  151 (608)
Q Consensus        75 ~w~~~~~~~~~~~~~~~p~~~~f--~~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~  151 (608)
                      .++.+++++++.+.+...+...-  .......+..+|.++.++|++|+++++..+            +    ++|+++ |
T Consensus        31 ~f~~~i~~li~l~~i~~~~~~~~~~~~~~~~~l~~~e~~~~~iF~~E~~lrl~~~------------~----~~y~~~~w   94 (285)
T 3rvy_A           31 FFTKFIIYLIVLNGITMGLETSKTFMQSFGVYTTLFNQIVITIFTIEIILRIYVH------------R----ISFFKDPW   94 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTT------------G----GGGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------h----HHHHcCCh
Confidence            46777777777666666554321  111223467899999999999999997653            1    679998 5


Q ss_pred             chhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          152 FIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYL  230 (608)
Q Consensus       152 f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~  230 (608)
                      -++|+++++|..+..  .+   .++.+|++|++|++|+.++.+.++.... .......+..+++.++++..++|++-+.+
T Consensus        95 n~~Dl~~v~~~~i~~--~~---~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~fa~~g~~~  169 (285)
T 3rvy_A           95 SLFDFFVVAISLVPT--SS---GFEILRVLRVLRLFRLVTAVPQMRKIVSALISVIPGMLSVIALMTLFFYIFAIMATQL  169 (285)
T ss_dssp             HHHHHHHHHHHHSCS--SS---SCTHHHHHGGGGGGHHHHSSTTHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHcc--cc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            599999988865432  12   2445677777777777666655544322 11222234444555555555566554444


Q ss_pred             hccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccC-Ccc-cCChhh----HHHHHHHHHHHH
Q 007323          231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYG-DVH-AVNLRE----MVFIMIYVSFDM  304 (608)
Q Consensus       231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGyg-di~-p~~~~e----~~~~~~~~~~g~  304 (608)
                      .....                        .+.+..+..|+||+++|+||+||| |+. |.+..+    ..+++++++.|+
T Consensus       170 f~~~~------------------------~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~  225 (285)
T 3rvy_A          170 FGERF------------------------PEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTF  225 (285)
T ss_dssp             HTTTC------------------------HHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             hCccc------------------------ccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHH
Confidence            32110                        022456779999999999999999 985 776644    888899999999


Q ss_pred             HHHHHHHHHHHHHHHc
Q 007323          305 ILGAYLIGNMTALIVK  320 (608)
Q Consensus       305 ~~~a~~i~~i~~~~~~  320 (608)
                      ++.+.++|.+.+.+..
T Consensus       226 ~~lnl~~aii~~~f~~  241 (285)
T 3rvy_A          226 VMINLVVAICVDAMAI  241 (285)
T ss_dssp             HHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999887765

>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2

Probab=99.68  E-value=1.8e-16  Score=150.26  Aligned_cols=124  Identities=13%  Similarity=0.134  Sum_probs=114.1

Q ss_pred             cccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhc
Q 007323          390 EKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILC  469 (608)
Q Consensus       390 ~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~  469 (608)
                      .++|+|..++++++..+...++.+.|++|++|+++|++.+.+|+|.+|.|+++..+++|++.++..+++|++||+.+++.
T Consensus        13 ~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~   92 (232)
T 2gau_A           13 LLRDVWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFA   92 (232)
T ss_dssp             GSHHHHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHH
T ss_pred             cccHhhhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEeCCCCEeeeehhhC
Confidence            46899999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             CCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          470 NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       470 ~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +.++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus        93 ~~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  136 (232)
T 2gau_A           93 EETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK  136 (232)
T ss_dssp             TSCCSSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCCcceEEEEecceEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988887765

>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis}

Probab=99.68  E-value=5.3e-16  Score=134.32  Aligned_cols=112  Identities=19%  Similarity=0.272  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccC
Q 007323          209 IVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV  288 (608)
Q Consensus       209 ~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~  288 (608)
                      .+.+++.++++.+++++++|.....         |                     .|.+|+||+++|+|||||||++|.
T Consensus        26 ~~~~~~~~~~~~~~~g~~~~~~~e~---------~---------------------~~~~a~y~~~~t~tTvGyGd~~p~   75 (148)
T 3vou_A           26 EFQVLFVLTFLTLTSGTIFYSTVEG---------L---------------------RPLDALYFSVVTLTTVGDGNFSPQ   75 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTSC---------C---------------------CHHHHHHHHHHHHTTCCCSSCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC---------C---------------------CHHHHHHHHHHHHHccCCCCCCCC
Confidence            3445556666677788887764321         1                     367999999999999999999999


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHH------HHHc-----CchhHHHHHHHHHHHHHHhhCCCCHHHHHH
Q 007323          289 NLREMVFIMIYVSFDMILGAYLIGNMTA------LIVK-----GSKTEKFRDKMTDLMKYINRNRLGRDIRDQ  350 (608)
Q Consensus       289 ~~~e~~~~~~~~~~g~~~~a~~i~~i~~------~~~~-----~~~~~~~~~~~~~~~~~m~~~~l~~~l~~r  350 (608)
                      |..+++++++.+++|+.++++.++.++.      +...     .....+..++++++++++++++.|++|+.|
T Consensus        76 t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rl~~i~~~~~~~~~~~~L~~R  148 (148)
T 3vou_A           76 TDFGKVFTILYIFIGIGLVFGFIHKLAVNVQLPSILSNRKKETDAYRLEVMEKLEAIEKKLAEHSRQGSLVPR  148 (148)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCCC
Confidence            9999999999999999999999999886      2222     122345667788999999999999999875

>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A*

Probab=99.67  E-value=3.9e-16  Score=156.64  Aligned_cols=127  Identities=17%  Similarity=0.304  Sum_probs=120.5

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      .++|+++|+|+.++++++..+...++.+.|++|++|+++||+.+++|+|.+|.|+++..+.+|++ ++..+.+|++||+.
T Consensus        12 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~g~~-~~~~~~~G~~fGe~   90 (333)
T 4ava_A           12 VEDLAGMDVFQGCPAEGLVSLAASVQPLRAAAGQVLLRQGEPAVSFLLISSGSAEVSHVGDDGVA-IIARALPGMIVGEI   90 (333)
T ss_dssp             HHHHTTSGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCCEEEEEECCEEEEEECTTCCE-EEEEECTTCEESHH
T ss_pred             HHHHhCCHhHhcCCHHHHHHHHhhCeEEEECCCCEEEeCCCcCCEEEEEEeeEEEEEEECCCCcE-EEEEecCCCEeeHH
Confidence            46889999999999999999999999999999999999999999999999999999998888887 88999999999999


Q ss_pred             hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      +++.+.++.++++|.++|+++.+++++|.+++ ++|.+...+++.+..+
T Consensus        91 ~l~~~~~~~~~v~A~~~~~~~~i~~~~~~~l~-~~p~~~~~~~~~~~~~  138 (333)
T 4ava_A           91 ALLRDSPRSATVTTIEPLTGWTGGRGAFATMV-HIPGVGERLLRTARQR  138 (333)
T ss_dssp             HHHHTCBCSSEEEESSCEEEEEECHHHHHHHH-HSTTHHHHHHHHHHHH
T ss_pred             HhcCCCCceEEEEEecCEEEEEEcHHHHHHHH-hChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999 8999999888777653

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.66  E-value=5.2e-16  Score=153.21  Aligned_cols=142  Identities=23%  Similarity=0.243  Sum_probs=128.5

Q ss_pred             HHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccC
Q 007323          368 VLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN  447 (608)
Q Consensus       368 ~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~  447 (608)
                      ...++|...|.+...+...+.++++++|+.++++++..++..++.+.|++|++|+++||.++.+|+|++|.|++..   +
T Consensus        20 ~~~~~p~~~rs~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~   96 (299)
T 3shr_A           20 SMQAFRKFTKSERSKDLIKEAILDNDFMKNLELSQIQEIVDCMYPVEYGKDSCIIKEGDVGSLVYVMEDGKVEVTK---E   96 (299)
T ss_dssp             --CCCCCCCCCHHHHHHHHHHHHTCTTTTTSCHHHHHHHHHHCEEEEECTTCEEECTTCBCCCEEEEEESCEEEEE---T
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHhhCHHHHcCCHHHHHHHHHhcCeEEECCCCEEEcCCCcCceEEEEEEEEEEEEE---C
Confidence            4558999999999999999999999999999999999999999999999999999999999999999999999865   4


Q ss_pred             CceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       448 g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      |  ..+..+.+|++|||.+++.+.|+.++++|.++|+++.+++++|.+++..+|.........++..
T Consensus        97 g--~~~~~~~~G~~fGe~~ll~~~~~~~tv~a~~~~~l~~i~~~~~~~i~~~~~~~~~~~~~~~l~~  161 (299)
T 3shr_A           97 G--VKLCTMGPGKVFGELAILYNCTRTATVKTLVNVKLWAIDRQCFQTIMMRTGLIKHTEYMEFLKS  161 (299)
T ss_dssp             T--EEEEEECTTCEESCSGGGTTTBCCSEEEESSCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             C--EEEEEeCCCCeeeHhHHhcCCCCCcEEEEcCCeEEEEEcHHHHHHHhhHhHHHHHHHHHHHHhh
Confidence            5  4688999999999999999999999999999999999999999999999987766655555543

>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus}

Probab=99.65  E-value=3.7e-16  Score=154.31  Aligned_cols=131  Identities=21%  Similarity=0.325  Sum_probs=123.8

Q ss_pred             HhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEec-cCCceeeeEEeCCCCee
Q 007323          384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE-ENGTEDYVSYLHPNSSF  462 (608)
Q Consensus       384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~-~~g~~~~~~~l~~G~~f  462 (608)
                      ....+++++++|..++++.+..++..++.+.|.+|++|+++||+++.+|+|.+|.|+++... .+|++..+..+++|++|
T Consensus       154 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~I~~~G~~~~~~yiI~~G~v~~~~~~~~~g~~~~~~~l~~G~~f  233 (299)
T 3shr_A          154 EYMEFLKSVPTFQSLPEEILSKLADVLEETHYENGEYIIRQGARGDTFFIISKGKVNVTREDSPNEDPVFLRTLGKGDWF  233 (299)
T ss_dssp             HHHHHHTTSHHHHHSCHHHHHHHTTTCEEEEECTTCEEECTTCEECEEEEEEESEEEEEECCSSSCCCEEEEEEETTCEE
T ss_pred             HHHHHHhhCHHhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCCEEEEEEeeEEEEEEecCCCCcceEEEEcCCCCEe
Confidence            34678889999999999999999999999999999999999999999999999999999876 68888899999999999


Q ss_pred             cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      ||.+++.+.|+.++++|.++|+++.+++++|.+++..+|.+...+++.+.++
T Consensus       234 Ge~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~p~~~~~~~~~l~~r  285 (299)
T 3shr_A          234 GEKALQGEDVRTANVIAAEAVTCLVIDRDSFKHLIGGLDDVSNKAYEDAEAK  285 (299)
T ss_dssp             CGGGGSSSEECSSEEEESSSEEEEEEEHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             ChHHHhCCCCcceEEEECCCEEEEEEeHHHHHHHHccHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999988773

>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...

Probab=99.65  E-value=1.2e-15  Score=142.30  Aligned_cols=121  Identities=17%  Similarity=0.264  Sum_probs=111.3

Q ss_pred             ccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC-
Q 007323          393 PLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-  471 (608)
Q Consensus       393 ~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~-  471 (608)
                      ++++.++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+. 
T Consensus         2 ~l~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~   81 (210)
T 3ryp_A            2 VLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQ   81 (210)
T ss_dssp             -----CCCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTC
T ss_pred             cCCCcCCHHHHHHHHHhcEEEEeCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEeeeHHHhcCCC
Confidence            4677899999999999999999999999999999999999999999999998899999999999999999999999887 


Q ss_pred             CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          472 PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       472 ~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      ++.++++|.++|+++.++.++|.++++++|.+...+++.+..
T Consensus        82 ~~~~~~~a~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  123 (210)
T 3ryp_A           82 ERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR  123 (210)
T ss_dssp             BCSSEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             CceEEEEECCcEEEEEEcHHHHHHHHHHChHHHHHHHHHHHH
Confidence            899999999999999999999999999999999888877765

>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens}

Probab=99.64  E-value=7.7e-17  Score=138.55  Aligned_cols=121  Identities=19%  Similarity=0.274  Sum_probs=107.2

Q ss_pred             HHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeec-CCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEE
Q 007323          377 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFL-PGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSY  455 (608)
Q Consensus       377 r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~-~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~  455 (608)
                      |.+.......++++++++|..++++.+..++..++.+.|. +|++|+++|+..+.+|+|.+|.|+++.  .+|++   ..
T Consensus         6 r~~~~~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~--~~g~~---~~   80 (134)
T 2d93_A            6 SGDDDIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTVEISH--PDGKV---EN   80 (134)
T ss_dssp             CSTTHHHHHHHHHHHSSTTTSSCHHHHHHHTTTEEEEEECSSSCEEECTTCEECEEEECCBSCEEEEC--SSSCE---EE
T ss_pred             cCHHHHHHHHHHHhCCcchhhCCHHHHHHHHHhheEEEecCCCCEEEeCCCCCCeEEEEEeCEEEEEc--CCCcE---EE
Confidence            3333344556788999999999999999999999999999 999999999999999999999999985  56765   55


Q ss_pred             eCCCCeecchhhhcCCCcccEE-EEeceeeeEEechhhHHHHHHHhhh
Q 007323          456 LHPNSSFGEVSILCNIPQPYTV-QVCELCRLLRIDKQSFTNIIDIYFC  502 (608)
Q Consensus       456 l~~G~~fGe~~~~~~~~~~~~~-~a~~~~~l~~l~~~~~~~ll~~~~~  502 (608)
                      +.+|++||+.+++.+.++.+++ +|.++|+++.+++++|.+++++.++
T Consensus        81 l~~G~~fG~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~~~~l~~~~~~  128 (134)
T 2d93_A           81 LFMGNSFGITPTLDKQYMHGIVRTKVDDCQFVCIAQQDYWRILNHVEK  128 (134)
T ss_dssp             ECTTCEESCCSSSCCEECCSEEEESSSSEEEEEEEHHHHHHHSSCCSS
T ss_pred             ecCCCccChhHhcCCCcceeEEEEEecceEEEEEeHHHHHHHHHHHHh
Confidence            8999999999999999998898 9999999999999999998877654

>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}

Probab=99.63  E-value=8e-16  Score=131.84  Aligned_cols=89  Identities=17%  Similarity=0.175  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCccc
Q 007323          208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA  287 (608)
Q Consensus       208 ~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p  287 (608)
                      .++..++.+++++++.++++|.++...+++                        ....|.+|+||+++|+|||||||++|
T Consensus         7 ~~~~~~~~~~~~~~~~a~~~~~~e~~~~~~------------------------~~~~~~~a~yf~~~T~tTvGyGd~~P   62 (139)
T 3eff_K            7 AAGAATVLLVIVLLAGSYLAVLAERGAPGA------------------------QLITYPRALWWSVETATTVGYGDLYP   62 (139)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHTTSSCTTC------------------------CCCCHHHHHHHHHHHHTTCCCSSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------------------------ccCCHHHHHHHHheeeecccCCCCcC
Confidence            344555566666777787777765432111                        11247899999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       288 ~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .|..+++++++++++|+.+++++++.+++.+.+
T Consensus        63 ~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~~~~   95 (139)
T 3eff_K           63 VTLWGRLVAVVVMVAGITSFGLVTAALATWFVG   95 (139)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHTTTTTH
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887755

>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2

Probab=99.62  E-value=3e-15  Score=139.13  Aligned_cols=116  Identities=15%  Similarity=0.265  Sum_probs=108.6

Q ss_pred             CCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC----Cc
Q 007323          398 CSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI----PQ  473 (608)
Q Consensus       398 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~----~~  473 (608)
                      |+++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.    |+
T Consensus         1 l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~~~~~~~~~~~~~~   80 (207)
T 2oz6_A            1 MKLKHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQER   80 (207)
T ss_dssp             CCHHHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBC
T ss_pred             CCHHHHHHHHhhcceEEECCCCEEEcCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCCcccHHHhcCCCCCCCc
Confidence            58899999999999999999999999999999999999999999998899999999999999999999999888    89


Q ss_pred             ccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       474 ~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      .++++|.++|+++.++.++|.++++++|.+...++..+..
T Consensus        81 ~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  120 (207)
T 2oz6_A           81 SAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD  120 (207)
T ss_dssp             CSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ceEEEECCcEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888877765

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.61  E-value=6.9e-15  Score=144.54  Aligned_cols=128  Identities=18%  Similarity=0.250  Sum_probs=116.4

Q ss_pred             hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCC-ceeeeEEeCCCCeec
Q 007323          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG-TEDYVSYLHPNSSFG  463 (608)
Q Consensus       385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g-~~~~~~~l~~G~~fG  463 (608)
                      ...+++++++|..+++..+..++..++.+.|.+|++|+++|++++.+|+|.+|.|+++....+| ++..+..+++|++||
T Consensus       155 ~~~~l~~~~lf~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fG  234 (291)
T 2qcs_B          155 YEEFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFG  234 (291)
T ss_dssp             HHHHHHTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEEEECSTTSCEEEEEEECTTCEEC
T ss_pred             HHHHHhhchHhhhCCHHHHHHHHhhcEEEEECCCCEEEeCCccCCEEEEEEeCEEEEEEecCCCCccEEEEEeCCCCEec
Confidence            3466788999999999999999999999999999999999999999999999999999766655 457889999999999


Q ss_pred             chhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHh
Q 007323          464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLL  512 (608)
Q Consensus       464 e~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~  512 (608)
                      |.+++.+.++.++++|.++|+++.+++++|.+++..+|++..+.++.+.
T Consensus       235 e~~ll~~~~~~~tv~a~~~~~~~~i~~~~f~~~l~~~p~~~~~~~~~~~  283 (291)
T 2qcs_B          235 EIALLMNRPKAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQQYN  283 (291)
T ss_dssp             SGGGTCCCCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTTSHHHHH
T ss_pred             HHHHcCCCCcceEEEECCcEEEEEEcHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987766665553

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.61  E-value=1.5e-15  Score=156.15  Aligned_cols=127  Identities=22%  Similarity=0.362  Sum_probs=117.8

Q ss_pred             HHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCC
Q 007323          381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS  460 (608)
Q Consensus       381 ~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~  460 (608)
                      ......+.++++++|+.++++.+..++..+..+.|.+|++|+++|+.++.+|+|.+|.|+++. +.+|++..+..+.+|+
T Consensus       139 ~~~~i~~~L~~~~lF~~L~~~~l~~l~~~~~~~~~~~Ge~I~~qGd~~d~~YiI~sG~v~v~~-~~~G~~~~v~~l~~G~  217 (416)
T 3tnp_B          139 QRNRLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRG  217 (416)
T ss_dssp             HHHHHHHHHTTSHHHHTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-ECSSCEEEEEEEESCC
T ss_pred             HHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEeCCCCEEEeCCCCCceEEEEEeeEEEEEE-ecCCCEEEEEEecCCC
Confidence            345567889999999999999999999999999999999999999999999999999999988 6789888999999999


Q ss_pred             eecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHH
Q 007323          461 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL  508 (608)
Q Consensus       461 ~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il  508 (608)
                      +|||.+++.+.|+.++++|.++|+++.|++++|..++..+|......+
T Consensus       218 ~fGe~all~~~pr~atv~A~~d~~l~~i~r~~f~~ll~~~~~~~~~~~  265 (416)
T 3tnp_B          218 SFGELALMYNTPKAATITATSPGALWGLDRVTFRRIIVKNNAKKRKMY  265 (416)
T ss_dssp             EECGGGGTSCCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHSSSS
T ss_pred             EEeeHHHhcCCCcccEEEEccCeEEEEEeehhhhhhhhcchhHHHHHH
Confidence            999999999999999999999999999999999999999887654433

>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2

Probab=99.61  E-value=1.8e-15  Score=141.31  Aligned_cols=122  Identities=15%  Similarity=0.156  Sum_probs=108.1

Q ss_pred             cccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC
Q 007323          392 VPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI  471 (608)
Q Consensus       392 ~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~  471 (608)
                      -|+|++.++..+..+...++.+.|++|++|+++|++.+++|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.
T Consensus         4 ~~~~~~~~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~~~~~~~~   83 (213)
T 1o5l_A            4 DKIHHHHHHMDLKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSE   83 (213)
T ss_dssp             ---------CCGGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSS
T ss_pred             cccchhhccCCHHHHhcccEEEEECCCCEEEcCCCccceEEEEEeeEEEEEEECCCCCEEEEEEecCCCEeeeHHHhcCC
Confidence            47889999999999999999999999999999999999999999999999998899999999999999999999998876


Q ss_pred             -CcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          472 -PQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       472 -~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                       ++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus        84 ~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~  126 (213)
T 1o5l_A           84 PRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE  126 (213)
T ss_dssp             CBCSSEEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CCceEEEEEccceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence             899999999999999999999999999999999888887766

>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}

Probab=99.59  E-value=8e-15  Score=141.33  Aligned_cols=118  Identities=16%  Similarity=0.280  Sum_probs=109.4

Q ss_pred             cCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCC-Ccc
Q 007323          396 KGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNI-PQP  474 (608)
Q Consensus       396 ~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~-~~~  474 (608)
                      ..++++.++.+...++.+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+. ++.
T Consensus        55 ~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~~~G~~~Ge~~~~~~~~~~~  134 (260)
T 3kcc_A           55 KPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERS  134 (260)
T ss_dssp             ----CHHHHHHHTTSEEEEECTTCEEECTTCBCCEEEEEEECEEEEEEECTTCCEEEEEEEETTCEESCTTTTSTTCBCC
T ss_pred             CCCCHHHHHHHHhhCEEEEECCCCEEECCCCcCCeEEEEEeCEEEEEEECCCCCEEEEEEcCCCCEEeehHHhCCCCCCc
Confidence            5589999999999999999999999999999999999999999999998899999999999999999999999888 899


Q ss_pred             cEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       475 ~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      ++++|.++|+++.++++.|.+++.++|.+...++..+..
T Consensus       135 ~~~~A~~~~~l~~i~~~~~~~l~~~~p~l~~~l~~~l~~  173 (260)
T 3kcc_A          135 AWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR  173 (260)
T ss_dssp             SEEEESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             eEEEECCCeEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999888877765

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.59  E-value=3.1e-15  Score=157.54  Aligned_cols=141  Identities=21%  Similarity=0.233  Sum_probs=128.4

Q ss_pred             CCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc--
Q 007323          372 IPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT--  449 (608)
Q Consensus       372 lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~--  449 (608)
                      .|+..|.+...+...+.++++++|+.++++++..++..++.+.|++|++|+++||+++.+|+|.+|.|+++..+.+|+  
T Consensus        27 ~~~~~rt~~~~~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~Gd~~~~~y~i~~G~v~v~~~~~~g~~~  106 (469)
T 1o7f_A           27 KRPLERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQD  106 (469)
T ss_dssp             SCSTTCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSSCGGG
T ss_pred             CChhhCCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCcEEEEEeeEEEEEEecCCCCCc
Confidence            466667777777788999999999999999999999999999999999999999999999999999999999888885  


Q ss_pred             eeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          450 EDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       450 ~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +.++..+++|++||+.+ +.+.++.++++|.++|+++.+++++|.+++.++|.+...+++.+..
T Consensus       107 ~~~~~~~~~G~~fGe~~-l~~~~~~~tv~A~~~~~l~~i~~~~~~~l~~~~p~~~~~l~~~~~~  169 (469)
T 1o7f_A          107 AVTICTLGIGTAFGESI-LDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAGLLAPPYG  169 (469)
T ss_dssp             CEEEEEECTTCEECGGG-GGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTTTSCTTTS
T ss_pred             ceEEEEccCCCCcchhh-hCCCCccceEEEccceeEEEEcHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            47899999999999999 8999999999999999999999999999999999987766654444

>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*

Probab=99.59  E-value=2.3e-15  Score=141.36  Aligned_cols=120  Identities=14%  Similarity=0.155  Sum_probs=113.1

Q ss_pred             HhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecch
Q 007323          386 LPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEV  465 (608)
Q Consensus       386 ~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~  465 (608)
                      ..+++++|+|..++++.+..+...++.+.|++|++|+++|++.+++|+|.+|.|+++ .+.+|++.++..+++|++||+ 
T Consensus         3 ~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~~G~-   80 (220)
T 2fmy_A            3 QMRLTDTNLLEVLNSEEYSGVLKEFREQRYSKKAILYTPNTERNLVFLVKSGRVRVY-LAYEDKEFTLAILEAGDIFCT-   80 (220)
T ss_dssp             TTCSCSSCHHHHTTSGGGTTTGGGSEEEEECTTCEEECTTCSSCEEEEEEESEEEEE-EECSSCEEEEEEEETTCEEES-
T ss_pred             hhhhhcChhhhcCCHHHHHHHHHhhheeEeCCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEeCC-
Confidence            457899999999999999999999999999999999999999999999999999995 678999999999999999998 


Q ss_pred             hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                            ++.++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus        81 ------~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~~~~  122 (220)
T 2fmy_A           81 ------HTRAFIQAMEDTTILYTDIRNFQNIVVEFPAFSLNMVKVLGD  122 (220)
T ss_dssp             ------CSSSEEEESSSEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             ------ccceEEEEcCcEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence                  788999999999999999999999999999999888877765

>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A*

Probab=99.58  E-value=1.3e-14  Score=142.51  Aligned_cols=127  Identities=23%  Similarity=0.364  Sum_probs=117.4

Q ss_pred             HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (608)
Q Consensus       383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f  462 (608)
                      ....+.++++|+|+.++++.+..++..++.+.|++|++|+++||+++.+|+|.+|.|+++.   +|  ..+..+.+|++|
T Consensus        35 ~~i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~---~g--~~~~~l~~G~~f  109 (291)
T 2qcs_B           35 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYV---NN--EWATSVGEGGSF  109 (291)
T ss_dssp             HHHHHHTTTCHHHHTSCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEE---TT--EEEEEECTTCEE
T ss_pred             HHHHHHHhcChhhhhCCHHHHHHHHHhccEEEECCCCEEEeCCCCCceEEEEeeeEEEEEE---CC--eEEEEcCCCCcc
Confidence            4457789999999999999999999999999999999999999999999999999999987   45  368899999999


Q ss_pred             cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      |+.+++.+.++.++++|.++|+++.+++++|.+++..+|.....+...++.+
T Consensus       110 Ge~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~  161 (291)
T 2qcs_B          110 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK  161 (291)
T ss_dssp             CGGGGTCCCBCSSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHhcCCCCceEEEECCCEEEEEEEhHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999888877776654

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.58  E-value=5.9e-15  Score=141.17  Aligned_cols=124  Identities=27%  Similarity=0.343  Sum_probs=112.9

Q ss_pred             hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (608)
Q Consensus       385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe  464 (608)
                      ..+.++++|+|++++++.+..++..++.+.|++|++|+++||+++++|+|.+|.|+++.   +|+  .+..+++|++||+
T Consensus         5 i~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~v~~---~~~--~~~~~~~g~~fGe   79 (246)
T 3of1_A            5 LEKSIRNNFLFNKLDSDSKRLVINCLEEKSVPKGATIIKQGDQGDYFYVVEKGTVDFYV---NDN--KVNSSGPGSSFGE   79 (246)
T ss_dssp             HHHHHHTCTTTTTSCHHHHHHHHTTCEEEEECTTCEEECTTCCCCEEEEEEECCEEEES---TTS--CCEEECTTCEECH
T ss_pred             HHHHHhcCHhhHhCCHHHHHHHHHhhceEEECCCCEEEecCCCCCEEEEEEeeEEEEEE---CCE--EEEecCCCCeeeh
Confidence            45788999999999999999999999999999999999999999999999999999886   444  3689999999999


Q ss_pred             hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      .+++.+.|+.++++|.++|+++.+++++|.+++..+|.....+...++.
T Consensus        80 ~~l~~~~~~~~tv~a~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~  128 (246)
T 3of1_A           80 LALMYNSPRAATVVATSDCLLWALDRLTFRKILLGSSFKKRLMYDDLLK  128 (246)
T ss_dssp             HHHHHTCCCSSEEEESSCEEEEEEEHHHHHHTTTTTTSHHHHHSHHHHH
T ss_pred             hHHhcCCCCCcEEEECCCeEEEEEEhHHHHHHHHHhHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999777666555544

>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1

Probab=99.57  E-value=3.7e-15  Score=140.18  Aligned_cols=118  Identities=12%  Similarity=0.091  Sum_probs=111.0

Q ss_pred             hhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhh
Q 007323          388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSI  467 (608)
Q Consensus       388 ~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~  467 (608)
                      +++++|+|..++++++..+...++.+.|++|++|+++|++.+++|+|.+|.|+++ .+.+|++.++..+++|++||    
T Consensus         1 ~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~-~~~~G~~~~~~~~~~G~~fG----   75 (222)
T 1ft9_A            1 MPPRFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVY-LVGEEREISLFYLTSGDMFC----   75 (222)
T ss_dssp             -CCCCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEE-EEETTEEEEEEEEETTCEEE----
T ss_pred             CcccchhhhcCCHHHHHHHHhhCcEEEECCCCEEECCCCCCCeEEEEEecEEEEE-ECCCCCEEEEEEcCCCCEec----
Confidence            4688999999999999999999999999999999999999999999999999997 77899999999999999999    


Q ss_pred             hcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          468 LCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       468 ~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                         .++.++++|.++|+++.+++++|.++++.+|.+...++..+..
T Consensus        76 ---~~~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  118 (222)
T 1ft9_A           76 ---MHSGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR  118 (222)
T ss_dssp             ---SCSSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             ---CCCCEEEEEccceEEEEEeHHHHHHHHHHChHHHHHHHHHHHH
Confidence               6788999999999999999999999999999999988877765

>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B*

Probab=99.55  E-value=9.2e-15  Score=150.35  Aligned_cols=130  Identities=17%  Similarity=0.315  Sum_probs=111.7

Q ss_pred             HhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccC------CceeeeEEeC
Q 007323          384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN------GTEDYVSYLH  457 (608)
Q Consensus       384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~------g~~~~~~~l~  457 (608)
                      .+..+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|+|.+|.|+++....+      |++..+..++
T Consensus       264 ~~~~~L~~v~lf~~Ls~~el~~L~~~l~~~~~~~Ge~I~~eGd~~~~~yiI~sG~v~v~~~~~~~~~~~~g~~~~l~~l~  343 (416)
T 3tnp_B          264 MYESFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDLADSFFIVESGEVKITMKRKGKSEVEENGAVEIARCF  343 (416)
T ss_dssp             SSSSSGGGCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEEEEEEEECC------------CEEEEEC
T ss_pred             HHHHHHhhchHhhcCCHHHHHHHHhhceEEEECCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCcccccCCceeEEEEeC
Confidence            4557888999999999999999999999999999999999999999999999999999987665      8888999999


Q ss_pred             CCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          458 PNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       458 ~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +|++|||.+++.+.++.++++|.++|+++.|++++|.+++..+|++..+.+..+.+
T Consensus       344 ~G~~fGE~all~~~~r~~tv~A~~~~~ll~I~~~~f~~ll~~~p~i~~~~~~~~~~  399 (416)
T 3tnp_B          344 RGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEE  399 (416)
T ss_dssp             TTCEESGGGGTCCSCCSSEEEEEEEEEEEEEEHHHHHHHHCCHHHHHTCC------
T ss_pred             CCCEecHHHHhCCCCceeEEEEcCCeEEEEEEHHHHHHHhcchHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999998876665555443

>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae}

Probab=99.55  E-value=1.7e-14  Score=137.90  Aligned_cols=116  Identities=19%  Similarity=0.374  Sum_probs=106.6

Q ss_pred             hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (608)
Q Consensus       385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe  464 (608)
                      ...+++++++|..++++.+..++..++.+.|.+|++|+++|++++.+|+|.+|.++++....   . .+..+++|++|||
T Consensus       123 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~~y~I~~G~v~v~~~~~---~-~~~~l~~g~~fGe  198 (246)
T 3of1_A          123 YDDLLKSMPVLKSLTTYDRAKLADALDTKIYQPGETIIREGDQGENFYLIEYGAVDVSKKGQ---G-VINKLKDHDYFGE  198 (246)
T ss_dssp             SHHHHHHCGGGTTCCHHHHHHHHHTCEEEEECTTCEEECTTSBCCEEEEEEECEEEEEETTT---E-EEEEEETTCEECH
T ss_pred             HHHHHhhChhhhcCCHHHHHHHHHhhheEEeCCCCEEEeCCCcCCEEEEEEecEEEEEEcCC---c-eEEEcCCCCcccH
Confidence            45667889999999999999999999999999999999999999999999999999987322   2 7889999999999


Q ss_pred             hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcH
Q 007323          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDG  504 (608)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~  504 (608)
                      .+++.+.|+.++++|.++|+++.+++++|.+++..+|+..
T Consensus       199 ~~~~~~~~~~~~v~a~~~~~~~~i~~~~f~~ll~~~~~~~  238 (246)
T 3of1_A          199 VALLNDLPRQATVTATKRTKVATLGKSGFQRLLGPAVDVL  238 (246)
T ss_dssp             HHHHHTCBCSSEEEESSCEEEEEEEHHHHHHHCTTHHHHH
T ss_pred             HHHhCCCCcccEEEECCCEEEEEEeHHHHHHHhccHHHHH
Confidence            9999999999999999999999999999999998887654

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.55  E-value=1.1e-14  Score=148.24  Aligned_cols=128  Identities=20%  Similarity=0.274  Sum_probs=116.5

Q ss_pred             HhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc-eeeeEEeCCCCee
Q 007323          384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-EDYVSYLHPNSSF  462 (608)
Q Consensus       384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~-~~~~~~l~~G~~f  462 (608)
                      .+..+++++++|..+++..+..++..++.+.|.+|++|+++|+.++.+|+|.+|.|+++....+|+ +..+..+++|++|
T Consensus       245 ~~~~~L~~v~~f~~Ls~~el~~l~~~~~~~~~~~ge~I~~eGd~~~~~yiI~~G~v~v~~~~~~~~~~~~v~~l~~Gd~f  324 (381)
T 4din_B          245 MYEEFLSKVSILESLEKWERLTVADALEPVQFEDGEKIVVQGEPGDDFYIITEGTASVLQRRSPNEEYVEVGRLGPSDYF  324 (381)
T ss_dssp             HHHHHHHHCSTTTTCCTTHHHHHHTTCBCCCBCSSCBSSCTTSBCCEEEEEEESCEEEECCSSSSSCCCEEEEECTTCEE
T ss_pred             HHHHHhhhhHHHHhccHHHHHHHHHhhhhccCCCCCEEEeCCCcCCEEEEEEeCEEEEEEecCCCCceEEEEEeCCCCEe
Confidence            345678889999999999999999999999999999999999999999999999999998766555 5568999999999


Q ss_pred             cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHH
Q 007323          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNL  511 (608)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l  511 (608)
                      ||.+++.+.|+.++++|.++|+++.|++++|..++..+|++..+.++.+
T Consensus       325 Ge~all~~~~r~~tv~A~~~~~ll~i~~~~f~~ll~~~~~i~~~~~~~~  373 (381)
T 4din_B          325 GEIALLLNRPRAATVVARGPLKCVKLDRPRFERVLGPCSEILKRNIQRY  373 (381)
T ss_dssp             CTTGGGSCCBCSSEEEESSCBEEEEEEHHHHHHHHCCHHHHHHTTHHHH
T ss_pred             chHHHhCCCCceeEEEEcCCEEEEEEeHHHHHHHHhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998877666554

>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A

Probab=99.55  E-value=1.4e-14  Score=138.89  Aligned_cols=124  Identities=16%  Similarity=0.122  Sum_probs=114.3

Q ss_pred             hhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchh
Q 007323          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVS  466 (608)
Q Consensus       387 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~  466 (608)
                      .++.+...+..+++++++.+...++.+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++.++..+++|++||+  
T Consensus         9 ~~~~~~~p~~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~i~~G~v~~~~~~~~G~~~~~~~~~~G~~~G~--   86 (250)
T 3e6c_C            9 DFCGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGK--   86 (250)
T ss_dssp             CCCCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESCEEEEEECTTSCEEEEEEECTTCEECC--
T ss_pred             hhhhhccchhhCCHHHHHHHHhhCeEEEECCCCEEECCCCCCCeEEEEEeeEEEEEEECCCCCEEEEEEecCCCEEee--
Confidence            345555566899999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             hhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          467 ILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       467 ~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      ++.+. +.++++|.++|+++.++++.|.+++.++|.+...++..+..
T Consensus        87 ~l~~~-~~~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~  132 (250)
T 3e6c_C           87 LYPTG-NNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLT  132 (250)
T ss_dssp             CSCCS-CCEEEEESSSEEEEEECHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             ecCCC-CceEEEEcccEEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            77777 99999999999999999999999999999999888777665

>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens}

Probab=99.55  E-value=1.9e-14  Score=146.47  Aligned_cols=127  Identities=25%  Similarity=0.362  Sum_probs=116.8

Q ss_pred             HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (608)
Q Consensus       383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f  462 (608)
                      ....+.++++++|+.++++.+..++..++.+.|.+|++|+++||+++.+|+|.+|.|+++.   +|+  .+..+++|++|
T Consensus       126 ~~i~~~l~~~~lF~~L~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~~yiI~~G~v~v~~---~~~--~v~~l~~G~~f  200 (381)
T 4din_B          126 TALAKAISKNVLFAHLDDNERSDIFDAMFPVTHIAGETVIQQGNEGDNFYVVDQGEVDVYV---NGE--WVTNISEGGSF  200 (381)
T ss_dssp             HHHHHHHTTCTTSSSCCHHHHHHHHHHCEEEECCTTCBSSCTTSBCCEEEECSSSEEEEEE---TTE--EEEEEESSCCB
T ss_pred             HHHHHHHhCChhhhcCCHHHHHHHHHhceEEEECCCCEEEeCCCCCCeEEEEEeeEEEEEE---CCe--EeeeCCCCCEE
Confidence            4456789999999999999999999999999999999999999999999999999999986   443  67889999999


Q ss_pred             cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      |+.+++.+.|+.++++|.++|+++.+++++|..++..+|.....++..++.+
T Consensus       201 Ge~all~~~~r~atv~A~~~~~l~~i~~~~f~~ll~~~~~~~~~~~~~~L~~  252 (381)
T 4din_B          201 GELALIYGTPRAATVKAKTDLKLWGIDRDSYRRILMGSTLRKRKMYEEFLSK  252 (381)
T ss_dssp             CGGGGTSCCBCSSEEEESSSCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EchHHhcCCCcceEEEECCCEEEEEEchHHHHHhhhhhhHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999888777766653

>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A

Probab=99.49  E-value=1.8e-13  Score=130.06  Aligned_cols=117  Identities=15%  Similarity=0.157  Sum_probs=105.4

Q ss_pred             cCCCHHHHHHHHH--HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc
Q 007323          396 KGCSSEFINQIVI--RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ  473 (608)
Q Consensus       396 ~~l~~~~l~~l~~--~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~  473 (608)
                      ++++++++.++..  .++.+.|++|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+ +|++||+.+++.+.+.
T Consensus         2 ~~l~~~~l~~ll~~~~~~~~~~~~ge~i~~~G~~~~~~y~I~~G~v~~~~~~~~G~e~~~~~~-~G~~~Ge~~~~~~~~~   80 (238)
T 2bgc_A            2 SNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQYY-KGAFVIMSGFIDTETS   80 (238)
T ss_dssp             --CHHHHHHHHHHHTTCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEEEE-ESSEEEESBCTTTCCB
T ss_pred             CCCCHHHHHHHHHhCCceEEEECCCCEEEeCCCCCceEEEEEecEEEEEEECCCCCEEEEEEc-CCCEecchhhhcCCCc
Confidence            3678899999885  589999999999999999999999999999999998999999999999 9999999999988864


Q ss_pred             --ccEEEEe-ceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          474 --PYTVQVC-ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       474 --~~~~~a~-~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                        ..++.|. ++|+++.+++++|.+++.++|.+...+++.+..
T Consensus        81 ~~~~~~~a~~~~~~v~~i~~~~~~~l~~~~p~~~~~~~~~l~~  123 (238)
T 2bgc_A           81 VGYYNLEVISEQATAYVIKINELKELLSKNLTHFFYVFQTLQK  123 (238)
T ss_dssp             SCCCEEEECSSEEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             CcceeEEEEEcceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence              6788888 599999999999999999999999888877765

>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A

Probab=99.49  E-value=3.6e-15  Score=120.09  Aligned_cols=89  Identities=20%  Similarity=0.077  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCccc
Q 007323          208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA  287 (608)
Q Consensus       208 ~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p  287 (608)
                      +++..++.+++++.+.++++++++...+++                        ....|.+|+||+++|+||+||||+.|
T Consensus         7 ~~l~~~~~~~~~~~~~a~~~~~~E~~~~~~------------------------~~~~~~~a~y~~~~T~tTvGyGDi~P   62 (103)
T 2k1e_A            7 EAQKAEEELQKVLEEASKKAVEAERGAPGA------------------------ALISYPDAIWWSVETATTVGYGDRYP   62 (103)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTC------------------------CCCCGGGTTTTTTGGGGCCSCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhccCCCCc------------------------ccccHHHHHHHHHHHHhcccCCCCCC
Confidence            344455566667777888888887542211                        11246699999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          288 VNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       288 ~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .|..+++++++.+++|+.+++++++.+.+.+.+
T Consensus        63 ~t~~gr~~~~~~~l~G~~~~~~~~~~i~~~~~~   95 (103)
T 2k1e_A           63 VTEEGRKVAEQVMKAGIEVFALVTAALATDFVR   95 (103)
T ss_dssp             CSSSCTHHHHHHHHHHHHHHHHTHHHHHTTGGG
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999887765

>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A

Probab=99.49  E-value=3.1e-13  Score=110.51  Aligned_cols=55  Identities=27%  Similarity=0.352  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      |.+|+||+++|+||+||||+.|.|..+++++++.+++|+.++++.++.+++.+..
T Consensus        50 ~~~a~y~~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~~~~l~~~~~~  104 (114)
T 2q67_A           50 PIDALYFSVVTLTTVGAGNFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQL  104 (114)
T ss_dssp             HHHHHHHHHHHHTSCCCSSCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcceeCCCCccCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999999999999999999998755

>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*

Probab=99.48  E-value=1.5e-13  Score=130.90  Aligned_cols=114  Identities=21%  Similarity=0.239  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHce---eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc--c
Q 007323          400 SEFINQIVIRLH---EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--P  474 (608)
Q Consensus       400 ~~~l~~l~~~~~---~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~--~  474 (608)
                      ++.++.+.....   .+.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++.++..+++|++||+.+++.+.+.  .
T Consensus        30 ~~~l~~L~~~~~~~~~~~~~~ge~i~~~G~~~~~ly~v~~G~v~~~~~~~~G~~~~l~~~~~g~~~G~~~~~~~~~~~~~  109 (243)
T 3la7_A           30 ANVFRQMATGAFPPVVETFERNKTIFFPGDPAERVYFLLKGAVKLSRVYEAGEEITVALLRENSVFGVLSLLTGNKSDRF  109 (243)
T ss_dssp             HHHHHHHCCSSCCCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEEECTTCCEEEEEEECTTCEESCHHHHSSCCSBCC
T ss_pred             HHHHHHHhhccchheeEEECCCCEEEcCCCCCceEEEEEeCEEEEEEECCCCCEEEEEEecCCCEEcchHHhCCCCCcce
Confidence            667778887777   99999999999999999999999999999999999999999999999999999999998874  4


Q ss_pred             cEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          475 YTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       475 ~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      ++++|.++|+++.+++++|.++++++|.+...++..+..
T Consensus       110 ~~~~A~~~~~v~~i~~~~~~~l~~~~p~~~~~l~~~l~~  148 (243)
T 3la7_A          110 YHAVAFTPVELLSAPIEQVEQALKENPELSMLMLRGLSS  148 (243)
T ss_dssp             EEEEESSSEEEEEEEHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             EEEEEccceEEEEEcHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            899999999999999999999999999999888877755

>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2

Probab=99.48  E-value=1.7e-13  Score=144.21  Aligned_cols=125  Identities=18%  Similarity=0.314  Sum_probs=108.3

Q ss_pred             HHHhHhhhcccccccCCCHHHHHHHHHHcee-eeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCC
Q 007323          382 QTLYLPYIEKVPLFKGCSSEFINQIVIRLHE-EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS  460 (608)
Q Consensus       382 ~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~-~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~  460 (608)
                      .+...+.++++++|..++++.+..++..+.. +.|++|++|+++||.++.+|+|.+|.|+++.   +|+ .++..+.+|+
T Consensus       332 ~~~~~~~l~~~~~f~~l~~~~~~~l~~~~~~~~~~~~g~~i~~~G~~~~~~yiI~~G~v~v~~---~~~-~~~~~l~~G~  407 (469)
T 1o7f_A          332 LEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGD  407 (469)
T ss_dssp             HHHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEE---TTT-EEEEEEETTC
T ss_pred             HHHHHHHHhcCHhhhhCCHHHHHHHHHHhheeeEecCCCEEEeCCCcCCeEEEEEEeEEEEEE---cCC-eeEEEecCCC
Confidence            3445678999999999999999999999985 5999999999999999999999999999987   333 3789999999


Q ss_pred             eecchhhhcCCCcccEEEEec-eeeeEEechhhHHHHHHHhhhcHHHHHHH
Q 007323          461 SFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKVLTN  510 (608)
Q Consensus       461 ~fGe~~~~~~~~~~~~~~a~~-~~~l~~l~~~~~~~ll~~~~~~~~~il~~  510 (608)
                      +||+.+++.+.|+.++++|.+ +|+++.+++++|.+++..+|.....+.+.
T Consensus       408 ~fGe~~ll~~~~~~~tv~a~~~~~~~~~i~~~~f~~ll~~~p~~~~~l~e~  458 (469)
T 1o7f_A          408 DFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRLKEH  458 (469)
T ss_dssp             EECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTCC-------
T ss_pred             EEEEehhhcCCCceEEEEEecCCEEEEEEcHHHHHHHHHHChHHHHHHHhc
Confidence            999999999999999999998 79999999999999999999988776543

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.44  E-value=3.5e-13  Score=154.56  Aligned_cols=129  Identities=23%  Similarity=0.297  Sum_probs=114.5

Q ss_pred             HHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEecc--CCceeeeE
Q 007323          377 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE--NGTEDYVS  454 (608)
Q Consensus       377 r~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~--~g~~~~~~  454 (608)
                      |.+-..+...+.|+++++|+++++..+.+++.++..+.|++|++||++||+++++|+|++|.|.++..+.  ++.+.++.
T Consensus        32 Rt~edl~~I~~~Lk~~~~f~~l~~~~l~~l~~~m~ye~~~~Ge~IfrqGd~gd~fYIIlsGsV~V~i~~~~~~~~~~~v~  111 (999)
T 4f7z_A           32 RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETSSHQDAVTIC  111 (999)
T ss_dssp             CCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESEEEEEECSSSCTTSCEEEE
T ss_pred             CCHHHHHHHHHHHhCCHhhhcCCHHHHHHHHhheEEEEECCCCEEEcCCCcCCEEEEEEeeEEEEEEecCCCCCCceeEE
Confidence            4444445566789999999999999999999999999999999999999999999999999999987543  34566789


Q ss_pred             EeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHH
Q 007323          455 YLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK  506 (608)
Q Consensus       455 ~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  506 (608)
                      .+.+|+.||| +++.+.||+++++|.++|+++.+++++|..++.++|+....
T Consensus       112 ~l~~G~sFGE-all~n~pRtaTv~a~~~s~l~~l~r~~F~~i~~~~~e~~~~  162 (999)
T 4f7z_A          112 TLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG  162 (999)
T ss_dssp             EEETTCEECG-GGGGTCCCSSEEEESSSEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred             EecCCcchhh-hhccCCCcceEEEeccceEEEEEEHHHHHHHHHhChHHHHH
Confidence            9999999999 78899999999999999999999999999999998865433

>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A

Probab=99.44  E-value=6.8e-13  Score=101.44  Aligned_cols=53  Identities=25%  Similarity=0.378  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI  318 (608)
Q Consensus       266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~  318 (608)
                      |.+|+||+++|+||+||||+.|.|..+|+++++.+++|+.++++.++.+++.+
T Consensus        29 ~~~a~yf~~~T~tTvGyGdi~P~t~~~r~~~~~~~~~G~~~~~~~~~~i~~~l   81 (82)
T 3ldc_A           29 WTVSLYWTFVTIATVGYGDYSPHTPLGMYFTCTLIVLGIGTFAVAVERLLEFL   81 (82)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999999999998764

>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A

Probab=99.43  E-value=6.3e-13  Score=105.21  Aligned_cols=54  Identities=31%  Similarity=0.448  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (608)
Q Consensus       266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~  319 (608)
                      |.+|+||+++|+||+||||+.|.|..+|+++++.+++|+.++++.++.++..++
T Consensus        33 ~~~a~yf~~~T~tTvGyGdi~P~t~~gr~~~~~~~~~G~~~~~~~i~~i~~~~~   86 (97)
T 3ouf_A           33 PIDALYFSVVTLTTVGYGDFSPQTDFGKIFTILYIFIGIGLVFGFIHKLAVNVQ   86 (97)
T ss_dssp             HHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHccCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            679999999999999999999999999999999999999999999999988765

>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}

Probab=99.41  E-value=5.2e-13  Score=145.02  Aligned_cols=130  Identities=19%  Similarity=0.316  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHce-eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceee
Q 007323          374 ISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLH-EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY  452 (608)
Q Consensus       374 ~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~-~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~  452 (608)
                      +..|.+...+...+.++++++|.+++++.+..++..+. .+.|++|++|+++||+++++|+|.+|.|+++..   |+ .+
T Consensus        19 p~~r~~~d~~~l~~~L~~~~lF~~Ls~~~l~~L~~~~~~~~~~~kGe~I~~eGd~~~~lyiIlsG~V~v~~~---g~-~i   94 (694)
T 3cf6_E           19 PGQRTVDDLEIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---GK-GV   94 (694)
T ss_dssp             GGGCCHHHHHHHHHHHTTCGGGTTSCHHHHHHHHTTCEEEEECSTTCEEECTTSBCCEEEEEEESEEEEEET---TT-EE
T ss_pred             hhhCCHHHHHHHHHHHHcChhhccCCHHHHHHHHHhcceEEEECCCCEEECCCCcCCeEEEEEEEEEEEEEe---CC-EE
Confidence            33454444555678899999999999999999999998 789999999999999999999999999999873   44 58


Q ss_pred             eEEeCCCCeecchhhhcCCCcccEEEEec-eeeeEEechhhHHHHHHHhhhcHHHH
Q 007323          453 VSYLHPNSSFGEVSILCNIPQPYTVQVCE-LCRLLRIDKQSFTNIIDIYFCDGRKV  507 (608)
Q Consensus       453 ~~~l~~G~~fGe~~~~~~~~~~~~~~a~~-~~~l~~l~~~~~~~ll~~~~~~~~~i  507 (608)
                      +..+++|++||+.+++.+.++.++++|.+ +|+++.+++++|.++++++|.....+
T Consensus        95 l~~l~~Gd~fGe~al~~~~~~~~tv~A~edd~~ll~I~~~~f~~ll~~~p~l~~~l  150 (694)
T 3cf6_E           95 VCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEANTVRL  150 (694)
T ss_dssp             EEEEETTCEECHHHHHHTCBCSSEEEECSSSEEEEEEEHHHHHHHTTTTCCCCEEE
T ss_pred             EEEeCCCCEeehHHHhCCCCceEEEEEeeCceEEEEEeHHHHHHHHHHCHHHHHHH
Confidence            89999999999999999999999999999 59999999999999999999885543

>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A

Probab=99.36  E-value=2.1e-12  Score=118.54  Aligned_cols=94  Identities=20%  Similarity=0.237  Sum_probs=86.1

Q ss_pred             eeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhh
Q 007323          413 EFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQS  492 (608)
Q Consensus       413 ~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~  492 (608)
                      +.|++|++|+++|++.+.+|+|.+|.|+++..+.+|++.++..+.+|++||+ +++.+.++.++++|.++|+++.+++++
T Consensus         2 ~~~~~g~~i~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~G~~~Ge-~~~~~~~~~~~~~A~~~~~v~~i~~~~   80 (195)
T 3b02_A            2 KRFARKETIYLRGEEARTLYRLEEGLVRVVELLPDGRLITLRHVLPGDYFGE-EALEGKAYRYTAEAMTEAVVQGLEPRA   80 (195)
T ss_dssp             EEECTTCEEECTTSBCCCEEEEEESCEEEEEECTTSCEEEEEEECTTCEECG-GGGTCSBCSSEEEESSSEEEEEECGGG
T ss_pred             eEcCCCCEEECCCCCCCeEEEEEeCEEEEEEECCCCCEEEEEEecCCCEech-hhhCCCCceeEEEECCcEEEEEEcHHH
Confidence            5799999999999999999999999999999889999999999999999999 999999999999999999999999999


Q ss_pred             HHHHHHHhhhcHHHHHHHHhc
Q 007323          493 FTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       493 ~~~ll~~~~~~~~~il~~l~~  513 (608)
                      |.      |.+...++..+..
T Consensus        81 ~~------p~~~~~~~~~l~~   95 (195)
T 3b02_A           81 MD------HEALHRVARNLAR   95 (195)
T ss_dssp             CC------HHHHHHHHHHHHH
T ss_pred             cC------HHHHHHHHHHHHH
Confidence            97      6666666665544

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.27  E-value=7.7e-12  Score=99.39  Aligned_cols=70  Identities=37%  Similarity=0.505  Sum_probs=58.4

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +.+|+|.|+..++.+.++.|++.|++++..|..|+||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~   71 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP   71 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence            3567888888888888888888888888888888888888888888888888888888888888888874

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.26  E-value=7.9e-12  Score=111.37  Aligned_cols=78  Identities=33%  Similarity=0.474  Sum_probs=71.8

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+..+.+|+|.|+..++.+.++.|+++|+++|..|..|+||||+|+..|+.+++++|+++|+|++.+|.+|+|+
T Consensus        62 d~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~Tp  139 (169)
T 4gpm_A           62 DVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTP  139 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             chhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            345566778899999999999999999999999999999999999999999999999999999999999999999985

>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E

Probab=99.25  E-value=2.9e-11  Score=138.65  Aligned_cols=114  Identities=20%  Similarity=0.322  Sum_probs=101.2

Q ss_pred             HHhHhhhcccccccCCCHHHHHHHHHHceee-eecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe
Q 007323          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEE-FFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS  461 (608)
Q Consensus       383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~-~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~  461 (608)
                      +...+.+.++|.|++++...+++++..+... .+.+|++|+++||.++++|+|.+|.|+++.   +++ ..+..+++||+
T Consensus       333 e~l~e~L~~i~~f~~Ls~~v~r~L~~~l~~~~~~kaGtvI~rQGE~gds~YIIlsG~V~V~~---~~~-~~v~~L~~Gd~  408 (999)
T 4f7z_A          333 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVI---YGK-GVVCTLHEGDD  408 (999)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHTTTCEEEEESSTTCEEECTTSBCCEEEEEEESEEEEEE---TTT-EEEEEEETTCE
T ss_pred             HHHHHHHHhhHHHhcCCHHHHHHHHHhhhhheeccCCCEEEeCCCcCCeEEEEEeeEEEEEE---cCC-cceEEecCCCc
Confidence            3446778999999999999999999998855 557899999999999999999999999986   232 25788999999


Q ss_pred             ecchhhhcCCCcccEEEEece-eeeEEechhhHHHHHHHh
Q 007323          462 FGEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIY  500 (608)
Q Consensus       462 fGe~~~~~~~~~~~~~~a~~~-~~l~~l~~~~~~~ll~~~  500 (608)
                      |||.+++.+.||.++++|.++ |+++.+++++|..++..-
T Consensus       409 FGElALL~~~PR~aTV~a~~d~c~fl~i~k~df~~il~~~  448 (999)
T 4f7z_A          409 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDGNRILRDV  448 (999)
T ss_dssp             ECGGGGTCSCBCSSEEEESSSSEEEEEEEHHHHHHHHHHH
T ss_pred             ccchhhccCCCeeEEEEEecCceEEEEeeHHHHHHHHhHH
Confidence            999999999999999999885 999999999999998763

>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}

Probab=99.25  E-value=1.1e-11  Score=114.32  Aligned_cols=99  Identities=21%  Similarity=0.216  Sum_probs=85.6

Q ss_pred             HHHceeeeecCCCeEEccCCcc--CeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceee
Q 007323          407 VIRLHEEFFLPGEVIMEKGNVV--DQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCR  484 (608)
Q Consensus       407 ~~~~~~~~~~~g~~i~~~g~~~--~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~  484 (608)
                      ...++.+.|++|++|+++|++.  +++|+|.+|.|+++..+++|++.++..+++|++||+ +++.+.++.++++|.++|+
T Consensus         2 ~~~~~~~~~~~g~~i~~~g~~~~~~~~y~v~~G~v~~~~~~~~G~~~~~~~~~~g~~~G~-~~l~~~~~~~~~~A~~~~~   80 (202)
T 2zcw_A            2 TQVRETVSFKAGDVILYPGVPGPRDRAYRVLEGLVRLEAVDEEGNALTLRLVRPGGFFGE-EALFGQERIYFAEAATDVR   80 (202)
T ss_dssp             ----CCEEECTTCEEECSBSCCTTCCCEEEEESCEEEEEECTTSCEEEEEEECTTCEECT-HHHHTCCBCSEEEESSCEE
T ss_pred             CccceEEEECCCCEEECCCCCCCCCeEEEEEeCEEEEEEECCCCcEEEEEEecCCCEeee-hhcCCCCcceEEEEcccEE
Confidence            4567889999999999999999  999999999999999889999999999999999999 8888999999999999999


Q ss_pred             eEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          485 LLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       485 l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      ++.+ .++|.      |.+...++..+..
T Consensus        81 v~~i-~~~~~------p~~~~~~~~~l~~  102 (202)
T 2zcw_A           81 LEPL-PENPD------PELLKDLAQHLSQ  102 (202)
T ss_dssp             EEEC-CSSCC------HHHHHHHHHHHHH
T ss_pred             EEEE-hHhcC------HHHHHHHHHHHHH
Confidence            9999 88876      6666655555443

>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A*

Probab=99.22  E-value=2.3e-11  Score=117.23  Aligned_cols=56  Identities=21%  Similarity=0.293  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .|.+|+||+++|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.+.+
T Consensus        82 s~~~a~yfs~vT~tTvGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~v~~~~~~  137 (301)
T 1xl4_A           82 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR  137 (301)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHhhhheeccCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            47799999999999999999999999999999999999999999999999887764

>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A

Probab=99.18  E-value=1.2e-12  Score=115.41  Aligned_cols=56  Identities=25%  Similarity=0.361  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .|.+|+||+++|+|||||||++|.|..+++++++++++|+++++++++.+++.+.+
T Consensus        67 ~~~~a~yf~~~T~tTvGyGDi~P~t~~~r~~~~~~~l~G~~~~~~~~~~i~~~~~~  122 (166)
T 3pjs_K           67 TYPRALWWSVETATTVGYGDLYPVTLWGRLVAVVVMVAGITSFGLVTAALATWFVG  122 (166)
T ss_dssp             STTTTTTTTHHHHSCCCCSSSCCCSSTTTTTTHHHHHHHHHHHHHHHTTSSSSSSS
T ss_pred             CHHHHHHHHHHHhccccCCCCCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999888775

>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans}

Probab=99.18  E-value=1.1e-10  Score=113.35  Aligned_cols=56  Identities=23%  Similarity=0.289  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .|.+|+||+++|||||||||+.|.+..+++++++.+++|++++|+++|.+.+.+.+
T Consensus        78 s~~~a~y~s~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~~g~i~~~~~~  133 (321)
T 2qks_A           78 GFGGAFFFSVETLATVGYGDMHPQTVYAHWIATLEIFVGMSSIALATGCAFIKMSQ  133 (321)
T ss_dssp             THHHHHHHHHHHHTTCCCCSSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             chhheeeeeeEEeccccCCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47799999999999999999999999999999999999999999999999998876

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.17  E-value=7.8e-11  Score=104.90  Aligned_cols=79  Identities=34%  Similarity=0.468  Sum_probs=74.4

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+++..+..+.+|++.++..+..+.++.+++.|++++..|..|+||||.|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus        28 advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~Tp  106 (169)
T 4gpm_A           28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTP  106 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence            3456677788999999999999999999999999999999999999999999999999999999999999999999985

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.17  E-value=3.5e-11  Score=101.14  Aligned_cols=77  Identities=29%  Similarity=0.296  Sum_probs=72.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..++.+.+++|++.|++++..|..|+||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus        33 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  109 (123)
T 3aaa_C           33 VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA  109 (123)
T ss_dssp             TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            45556677899999999999999999999999999999999999999999999999999999999999999999984

>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}

Probab=99.16  E-value=9.7e-11  Score=109.96  Aligned_cols=204  Identities=13%  Similarity=0.147  Sum_probs=115.0

Q ss_pred             HHHHHHHHHHHHHHHHhchheeecc--CCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhc-c
Q 007323           75 AWTKFILIWAVYSSIFTPVEFGFFR--GLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRS-S  151 (608)
Q Consensus        75 ~w~~~~~~~~~~~~~~~p~~~~f~~--~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~-~  151 (608)
                      .++.++.++++.+.+...... .+.  +....+..+|.++.++|++|+++|+....            .  .++|+++ |
T Consensus        13 ~f~~~i~~~I~ln~i~l~~~~-~~~~~~~~~~l~~~e~~~~~iF~~E~~lri~~~~------------~--~~~y~~~~w   77 (229)
T 4dxw_A           13 IFQFTVVSIIILNAVLIGATT-YELDPLFLETIHLLDYGITIFFVIEILIRFIGEK------------Q--KADFFKSGW   77 (229)
T ss_dssp             HHHHHHHHHHHHHHHSTTTCC-SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-----------------------CHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcc-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------------c--hhHHhcCCc
Confidence            467777777777777766543 111  11223667899999999999999987642            1  2789999 5


Q ss_pred             chhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          152 FIIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEKDIR-INYMFSRIVKLIAVELYCSHIAACIFYYL  230 (608)
Q Consensus       152 f~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~h~~ac~~~~~  230 (608)
                      -++|++.++|..+...   ....++.+|++|++|++|+.++.+.++.... .......+..+.+.++++..++|.+-+.+
T Consensus        78 ni~D~~~v~~~~i~~~---~~~~~~~lr~~RilR~lrl~~~~~~l~~l~~~l~~s~~~l~~~~~~l~~~~~ifa~~g~~l  154 (229)
T 4dxw_A           78 NIFDTVIVAISLIPIP---NNSSFLVLRLLRIFRVLRLISVIPELKQIIEAILESVRRVFFVSLLLFIILYIYATMGAIL  154 (229)
T ss_dssp             HHHHHHHHHHTTCC-----------CCTTHHHHHHTTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcC---ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5999877766533221   1123345566667777777666666554332 22334456666666666666677765544


Q ss_pred             hccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcccC----ChhhHH-HHHHHHHHHHH
Q 007323          231 ATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHAV----NLREMV-FIMIYVSFDMI  305 (608)
Q Consensus       231 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p~----~~~e~~-~~~~~~~~g~~  305 (608)
                      .....+                        +.++.+..|+||...++||.||+|+...    +....+ +..++.+.+.+
T Consensus       155 f~~~~~------------------------~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i  210 (229)
T 4dxw_A          155 FGNDDP------------------------SRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSIT  210 (229)
T ss_dssp             TTTTSC------------------------TTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHH
T ss_pred             hccCCc------------------------ccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            332111                        1123456999999999999999996221    122223 33334444455


Q ss_pred             HHHHHHHHHHHHHHc
Q 007323          306 LGAYLIGNMTALIVK  320 (608)
Q Consensus       306 ~~a~~i~~i~~~~~~  320 (608)
                      +...+++.+.+-+++
T Consensus       211 ~lNlfiavi~~~f~~  225 (229)
T 4dxw_A          211 ILNLVIAILVDVVIQ  225 (229)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555666666554443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.14  E-value=8.4e-11  Score=96.61  Aligned_cols=77  Identities=30%  Similarity=0.386  Sum_probs=69.5

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....+.+..+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA   93 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence            34456778899999999999999999999999999999999999999999999999999999999999999999984

>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A*

Probab=99.12  E-value=9.5e-11  Score=114.05  Aligned_cols=57  Identities=25%  Similarity=0.345  Sum_probs=53.7

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG  321 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~~  321 (608)
                      .|.+|+||+++|+|||||||++|.+..+++++++.+++|++++++++|.+.+.+.+.
T Consensus        96 s~~~a~yfs~vT~tTVGYGDi~P~t~~gr~~~~~~~l~G~~~~a~~ig~i~~~~~~~  152 (333)
T 1p7b_A           96 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFARP  152 (333)
T ss_dssp             STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSC
T ss_pred             cHHHhHhhhheeeeecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999999999999999999988763

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.10  E-value=7.2e-11  Score=114.02  Aligned_cols=78  Identities=17%  Similarity=0.176  Sum_probs=73.5

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+..+.+|+|.|+..++.+.++.|++.|+++|..+..|+||||+|+..|+.++|++|+++|||+|.+|.+|+|+
T Consensus       144 ~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  221 (269)
T 4b93_B          144 KPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTA  221 (269)
T ss_dssp             CSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCS
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            345566778899999999999999999999999999999999999999999999999999999999999999999996

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=99.08  E-value=3.4e-10  Score=108.35  Aligned_cols=56  Identities=20%  Similarity=0.293  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .|.+|+||+++|+|||||||++|.|..+|+++++++++|+.+++++++.++..+.+
T Consensus       115 ~~~~a~yf~~~t~tTvGYGdi~P~T~~gk~~~i~~~l~Gi~~~~~~~~~i~~~l~~  170 (309)
T 3um7_A          115 DLGSAFFFSGTIITTIGYGNVALRTDAGRLFCIFYALVGIPLFGILLAGVGDRLGS  170 (309)
T ss_dssp             SHHHHHHHHHHHHTSCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhhhhHhhheeeeecccCCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999987754

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.07  E-value=1.7e-10  Score=98.89  Aligned_cols=77  Identities=27%  Similarity=0.273  Sum_probs=72.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        36 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  112 (137)
T 3c5r_A           36 PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP  112 (137)
T ss_dssp             SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            44556677899999999999999999999999999999999999999999999999999999999999999999985

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.07  E-value=2e-10  Score=98.42  Aligned_cols=78  Identities=32%  Similarity=0.374  Sum_probs=72.5

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus        39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tp  116 (136)
T 2jab_A           39 DVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTA  116 (136)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcCcCCCCCCH
Confidence            345556678899999999999999999999999999999999999999999999999999999999999999999984

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.07  E-value=3.3e-10  Score=102.51  Aligned_cols=79  Identities=23%  Similarity=0.231  Sum_probs=73.3

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..++..+..+.+|+|.|+..++.+.++.|+++|++++..| ..|+||||+|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus        67 ~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp  146 (183)
T 3deo_A           67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA  146 (183)
T ss_dssp             SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCH
Confidence            3455667778899999999999999999999999999998 889999999999999999999999999999999999984

>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A*

Probab=99.05  E-value=1.1e-09  Score=106.22  Aligned_cols=98  Identities=18%  Similarity=0.311  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCC--CCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCccc
Q 007323          210 VKLIAVELYCSHIAACIFYYLATTLPP--EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVHA  287 (608)
Q Consensus       210 ~~l~~~~~~~~h~~ac~~~~~~~~~~~--~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~p  287 (608)
                      +.+++.+++...++|.+||+++...++  ...+..|.....             ....+..|+||+++|+|||||||+.|
T Consensus        47 lif~~~y~~swl~Fa~ly~~ia~~~Gdl~~~~~~~~~~Cv~-------------~~~sf~~af~fSv~T~TTvGYGd~~p  113 (340)
T 3sya_A           47 LIFVMVYTVTWLFFGMIWWLIAYIRGDMDHIEDPSWTPCVT-------------NLNGFVSAFLFSIETETTIGYGYRVI  113 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCSSCSSCCCSBS-------------CCCSTTHHHHHHHHHHSCCCCSSSCB
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccchhc-------------cccCHHHHHhhhheeeeeecCCCccC
Confidence            334444555666789999988742211  111122322111             01234599999999999999999999


Q ss_pred             C--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          288 V--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       288 ~--~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .  +..+++++++.+++|+++.|+++|.+.+-+++
T Consensus       114 ~~~~~~g~~l~~~~~l~G~~l~a~~~giv~ak~sr  148 (340)
T 3sya_A          114 TDKCPEGIILLLIQSVLGSIVNAFMVGCMFVKISQ  148 (340)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            7  68899999999999999999999999988876

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.05  E-value=3.8e-10  Score=94.70  Aligned_cols=72  Identities=36%  Similarity=0.465  Sum_probs=67.5

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....+++|.|+..++.+.++.+++.|++++..|..|+||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus         5 ~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tp   76 (123)
T 3aaa_C            5 SMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP   76 (123)
T ss_dssp             --CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             cccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH
Confidence            445689999999999999999999999999999999999999999999999999999999999999999984

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.04  E-value=3.6e-10  Score=109.55  Aligned_cols=77  Identities=13%  Similarity=0.173  Sum_probs=71.9

Q ss_pred             ccchhhhhhhhHhHHHhc---CCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~---~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+..+.+|+|.|+..   +..+.++.|+++|+++|..|..|+||||+|+..|+.+++++|+++|||++.+|.+|+|+
T Consensus       162 l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tp  241 (278)
T 1dcq_A          162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP  241 (278)
T ss_dssp             CSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCH
Confidence            445566788999999999   89999999999999999999999999999999999999999999999999999999985

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.03  E-value=6.4e-10  Score=105.73  Aligned_cols=79  Identities=23%  Similarity=0.231  Sum_probs=73.6

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..++..+..+.+|+|.|+..++.+.++.|+++|++++..+ ..|+||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        68 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~  147 (244)
T 3ui2_A           68 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTA  147 (244)
T ss_dssp             CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence            3556677788999999999999999999999999999998 789999999999999999999999999999999999984

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.02  E-value=5.4e-10  Score=99.18  Aligned_cols=77  Identities=27%  Similarity=0.272  Sum_probs=71.1

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus        68 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  144 (165)
T 3twr_A           68 VHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTP  144 (165)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             CCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCh
Confidence            44556677899999999999999999999999999999999999999999999999999999999999999999986

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.02  E-value=1.9e-10  Score=98.45  Aligned_cols=76  Identities=20%  Similarity=0.169  Sum_probs=70.4

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCC-CchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+. ++.+.++.|+++|++++..|.. |.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        38 ~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp  114 (136)
T 1d9s_A           38 PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLP  114 (136)
T ss_dssp             TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCH
T ss_pred             cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence            44556677899999999 9999999999999999999999 9999999999999999999999999999999999984

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.01  E-value=4.4e-10  Score=98.37  Aligned_cols=77  Identities=23%  Similarity=0.278  Sum_probs=71.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        60 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  136 (153)
T 1awc_B           60 RDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            44455667899999999999999999999999999999999999999999999999999999999999999999984

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.00  E-value=4.8e-10  Score=101.52  Aligned_cols=70  Identities=17%  Similarity=0.112  Sum_probs=49.6

Q ss_pred             hhhhhhHhHHHhcCCH----HHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc------HHHHHHHHhcCCCCCCcCCCCC
Q 007323          537 AELALKVNSAAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGY------EEIMTFLIQKGVDINLKGNSIM  606 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~----~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~------~~~v~~Ll~~ga~~~~~~~~g~  606 (608)
                      ..+.+|+|.|+..++.    +++++|+++|+++|..|..|+||||+|+..++      .+++++|+++|||+|++|..|+
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~  115 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYK  115 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGT
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcC
Confidence            4466777777776654    36777777777777777777777777776665      4667777777777777777776

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.00  E-value=3.2e-10  Score=93.90  Aligned_cols=79  Identities=28%  Similarity=0.357  Sum_probs=70.7

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..++..+....+++|.|+..+..+.++.|++.|++++..|..|.||||.|+..++.+++++|+++||++|.++..|.|+
T Consensus        33 ~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~  111 (115)
T 2l6b_A           33 ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH  111 (115)
T ss_dssp             CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred             CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence            3455667778899999999999999999999999999999999999999999999999999999999999999998874

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=98.98  E-value=9.7e-10  Score=94.03  Aligned_cols=73  Identities=32%  Similarity=0.374  Sum_probs=68.8

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .....+++|.|+..++.+.++.|++.|++++..|..|+||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~   83 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTP   83 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCH
Confidence            3556789999999999999999999999999999999999999999999999999999999999999999984

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=98.98  E-value=2e-10  Score=95.09  Aligned_cols=74  Identities=32%  Similarity=0.479  Sum_probs=69.8

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..++.+++++|+++|++++.+|..|+|+
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tp   78 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTP   78 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCT
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCH
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999985

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=98.97  E-value=9.1e-10  Score=99.19  Aligned_cols=78  Identities=22%  Similarity=0.230  Sum_probs=70.5

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        64 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  141 (179)
T 3f6q_A           64 RINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMP  141 (179)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCG
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCc
Confidence            344555667889999999999999999999999999999999999999999999999999999999999999999985

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=98.97  E-value=1.3e-09  Score=96.56  Aligned_cols=78  Identities=26%  Similarity=0.278  Sum_probs=72.2

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+..+....+++|.|+..++.+.++.|+++|++++..|..|+||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  111 (165)
T 3twr_A           34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTP  111 (165)
T ss_dssp             TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            344555667799999999999999999999999999999999999999999999999999999999999999999984

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=98.97  E-value=1.1e-09  Score=98.55  Aligned_cols=78  Identities=28%  Similarity=0.264  Sum_probs=72.6

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+..+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~  108 (179)
T 3f6q_A           31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVP  108 (179)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence            345566677899999999999999999999999999999999999999999999999999999999999999999984

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=98.96  E-value=1.4e-09  Score=95.36  Aligned_cols=77  Identities=27%  Similarity=0.354  Sum_probs=59.3

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++ ++++.+|.+|.|+
T Consensus        60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~  136 (156)
T 1bd8_A           60 SPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTP  136 (156)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCH
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCH
Confidence            3445556667788888888888888888888888887777788888888888888888888877 7888888777774

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=98.96  E-value=4.3e-10  Score=96.24  Aligned_cols=76  Identities=24%  Similarity=0.382  Sum_probs=70.8

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCC-CCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS-IMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~-g~T~  608 (608)
                      ++..+....+++|.|+..++.+.++.|++.|++++..|..|+||||.|+. |+.+++++|+++|++++.+|.. |+|+
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCH
Confidence            44556677899999999999999999999999999999999999999999 9999999999999999999999 8884

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=98.95  E-value=7.5e-10  Score=94.84  Aligned_cols=74  Identities=27%  Similarity=0.383  Sum_probs=69.8

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+.+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   79 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSP   79 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999884

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=98.95  E-value=5.6e-10  Score=98.11  Aligned_cols=78  Identities=24%  Similarity=0.223  Sum_probs=58.6

Q ss_pred             cccchhhhhhh-hHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELAL-KVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~-~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+....+ |+|.|+..++.+.++.|+++|++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.|.
T Consensus        69 ~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  147 (156)
T 1bi7_B           69 EPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDA  147 (156)
T ss_dssp             CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-------------
T ss_pred             CCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcc
Confidence            34455566777 9999999999999999999999999999999999999999999999999999999999999988773

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.94  E-value=1.5e-09  Score=102.77  Aligned_cols=77  Identities=27%  Similarity=0.310  Sum_probs=71.5

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC-C
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM-Q  607 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~-T  607 (608)
                      .++..+....+|+|.|+..++.+.++.|+++|++++..|..|+||||.|+..|+.+++++|+++|++++.+|..|. |
T Consensus        62 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t  139 (239)
T 1ycs_B           62 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT  139 (239)
T ss_dssp             SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcc
Confidence            4555667788999999999999999999999999999999999999999999999999999999999999998776 6

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=98.93  E-value=1.6e-09  Score=85.75  Aligned_cols=67  Identities=34%  Similarity=0.520  Sum_probs=62.4

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD  597 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  597 (608)
                      .++..+....+|+|.|+..++.+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++||+
T Consensus        27 ~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           27 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            3455667788999999999999999999999999999999999999999999999999999999986

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=98.92  E-value=6.5e-10  Score=97.68  Aligned_cols=77  Identities=19%  Similarity=0.219  Sum_probs=69.9

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCch-HHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRS-PLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~t-pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+....+|+|.|+ .++.+.+++|+++|++++..|..|.| |||+|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        37 ~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp  114 (156)
T 1bi7_B           37 NPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP  114 (156)
T ss_dssp             CTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCH
T ss_pred             CCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            34445566788999875 89999999999999999999999999 9999999999999999999999999999999984

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=98.92  E-value=1.5e-09  Score=96.97  Aligned_cols=77  Identities=19%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+....+++|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  138 (172)
T 3v30_A           62 PHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTP  138 (172)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             chhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCH
Confidence            34445566788999999999999999999999999999999999999999999999999999999999999998884

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=98.92  E-value=2.1e-09  Score=93.92  Aligned_cols=73  Identities=32%  Similarity=0.393  Sum_probs=69.4

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +....+++|.|+..++.+.++.|++.|++++..|..|+||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        31 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  103 (153)
T 1awc_B           31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTA  103 (153)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            4557799999999999999999999999999999999999999999999999999999999999999999984

>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}

Probab=98.92  E-value=2.2e-09  Score=102.66  Aligned_cols=55  Identities=20%  Similarity=0.325  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHhhccccCCcccCChhhH------HHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          266 YITSMYASVVTMTTVGYGDVHAVNLREM------VFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~------~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      |++|+||+++|+|||||||+.|.+..++      +++++++++|+.+++++++.+++.+..
T Consensus       225 ~~da~y~~~vTltTvGyGd~~p~t~~g~~~~~y~~~~~~~il~Gl~~~a~~~~~i~~~~~~  285 (309)
T 3um7_A          225 KLEAIYFVIVTLTTVGFGDYVAGADPRQDSPAYQPLVWFWILLGLAYFASVLTTIGNWLRV  285 (309)
T ss_dssp             HHHHHHHHHHHHTTCCCSSCCTTCCTTCCCSTHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHhheeccccCCCCCCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6799999999999999999999998886      599999999999999999999887765

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=98.91  E-value=2e-09  Score=101.07  Aligned_cols=78  Identities=28%  Similarity=0.260  Sum_probs=71.6

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T~  608 (608)
                      .++..+..+.+|+|.|+..++.+.+++|++.|++++..|..|+||||+|+..|+.+++++|+++|++++..+ .+|+|+
T Consensus        46 ~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tp  124 (229)
T 2vge_A           46 DPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATA  124 (229)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCT
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCH
Confidence            344566778899999999999999999999999999999999999999999999999999999999999997 699985

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=98.91  E-value=2.1e-09  Score=90.24  Aligned_cols=77  Identities=34%  Similarity=0.491  Sum_probs=70.0

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        28 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  104 (126)
T 1n0r_A           28 VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP  104 (126)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCcccCCCCCCH
Confidence            34445567889999999999999999999999999999999999999999999999999999999999999999884

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=98.91  E-value=2e-09  Score=95.95  Aligned_cols=77  Identities=32%  Similarity=0.443  Sum_probs=68.9

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+++|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus        73 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  149 (169)
T 2y1l_E           73 VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTA  149 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            44455667889999999999999999999999999999999999999999999999999999999999999999874

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=98.91  E-value=3.7e-09  Score=94.18  Aligned_cols=78  Identities=32%  Similarity=0.413  Sum_probs=72.3

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+....+++|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  116 (169)
T 2y1l_E           39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTP  116 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            344556677899999999999999999999999999999999999999999999999999999999999999999884

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.90  E-value=1.2e-09  Score=102.13  Aligned_cols=78  Identities=22%  Similarity=0.273  Sum_probs=72.6

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHc-CCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+..+.+++|.|+..++.+.++.|++. |++++..|..|+||||+|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus        98 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  176 (222)
T 3ehr_A           98 GVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLA  176 (222)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCH
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCH
Confidence            3455567788999999999999999999998 99999999999999999999999999999999999999999999984

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=98.90  E-value=2e-09  Score=95.71  Aligned_cols=77  Identities=19%  Similarity=0.233  Sum_probs=70.3

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        62 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  138 (167)
T 3v31_A           62 PQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNS  138 (167)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            34445667789999999999999999999999999999999999999999999999999999999999999999884

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=98.89  E-value=2e-09  Score=94.40  Aligned_cols=77  Identities=25%  Similarity=0.349  Sum_probs=71.2

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+..+....+|+|. +..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  104 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP  104 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            445556668899999 99999999999999999999999999999999999999999999999999999999999984

>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A*

Probab=98.89  E-value=4.4e-09  Score=102.05  Aligned_cols=98  Identities=16%  Similarity=0.234  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCC---CCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCcc
Q 007323          210 VKLIAVELYCSHIAACIFYYLATTLPP---EQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDVH  286 (608)
Q Consensus       210 ~~l~~~~~~~~h~~ac~~~~~~~~~~~---~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi~  286 (608)
                      +.+++.+++...++|.+||+++...++   .....+|.....             ....+..|+||++.|+||+||||+.
T Consensus        49 l~f~~~y~~swl~Fally~~ia~~~gdl~~~~~~~~~~~Cv~-------------~~~sf~~af~fSv~T~TTvGYGd~~  115 (343)
T 3spc_A           49 LLFSLAFLVSWLLFGLIFWLIALIHGDLENPGGDDTFKPCVL-------------QVNGFVAAFLFSIETQTTIGYGFRC  115 (343)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTGGGCTTCCSSCCCSEE-------------TCCSHHHHHHHHHHHHSCCCCSSSE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccc-------------ccCCHHHHhheeeeeeEeecCCCcc
Confidence            334445566667788888887543221   111112322110             1134679999999999999999998


Q ss_pred             cC--ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          287 AV--NLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       287 p~--~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      |.  +..+++++.+.+++|+++.|+++|.+.+-+++
T Consensus       116 p~~~~~~~~~l~~~~~l~G~~l~a~~~giv~ak~sr  151 (343)
T 3spc_A          116 VTEECPLAVFMVVVQSIVGCIIDSFMIGAIMAKMAR  151 (343)
T ss_dssp             ECSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            64  89999999999999999999999999998876

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=98.89  E-value=3e-09  Score=95.01  Aligned_cols=77  Identities=26%  Similarity=0.341  Sum_probs=71.8

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  105 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTP  105 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            44455677899999999999999999999999999999999999999999999999999999999999999999984

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=98.89  E-value=2e-09  Score=98.15  Aligned_cols=77  Identities=21%  Similarity=0.258  Sum_probs=70.5

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        94 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  170 (192)
T 2rfm_A           94 VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTA  170 (192)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            44455667899999999999999999999999999999999999999999999999999999999999999999884

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=98.89  E-value=5.5e-09  Score=112.09  Aligned_cols=85  Identities=21%  Similarity=0.300  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhccccCCc
Q 007323          207 SRIVKLIAVELYCSHIAACIFYYLAT-TLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGYGDV  285 (608)
Q Consensus       207 ~~~~~l~~~~~~~~h~~ac~~~~~~~-~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGygdi  285 (608)
                      .++...++.+++++++++|+++++.. .++.     .|                     .|++|+||+++|+||+||||+
T Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-----~~---------------------~~~~~~y~~~~t~tTvGygd~   71 (565)
T 4gx0_A           18 KVLLLYCAFLLVMLLAYASIFRYLMWHLEGR-----AY---------------------SFMAGIYWTITVMTTLGFGDI   71 (565)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----CC---------------------CHHHHHHHHHHHHTTCCCCSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CC---------------------chhhhhheeeeeeeeecCCCc
Confidence            34556666666777777777766542 1110     11                     256999999999999999999


Q ss_pred             ccCChhhHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 007323          286 HAVNLREMVFIMIYVSFDMILGAYLIGN-MTAL  317 (608)
Q Consensus       286 ~p~~~~e~~~~~~~~~~g~~~~a~~i~~-i~~~  317 (608)
                      +|.|..+++++++++++|+.++++.++. +.+.
T Consensus        72 ~p~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  104 (565)
T 4gx0_A           72 TFESDAGYLFASIVTVSGVIFLDIILPFGFVSM  104 (565)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887 4443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=98.88  E-value=2e-09  Score=104.38  Aligned_cols=75  Identities=27%  Similarity=0.303  Sum_probs=70.5

Q ss_pred             chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHh-cCCCCCCcCCCCCCC
Q 007323          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIMQI  608 (608)
Q Consensus       534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~T~  608 (608)
                      ..+..+.+|+|.|+..++.+.++.|++.|++++..|..|+||||+|+..|+.+++++|++ +|+|++.+|..|+|+
T Consensus       178 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~Tp  253 (276)
T 4hbd_A          178 KASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTA  253 (276)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCH
Confidence            345567899999999999999999999999999999999999999999999999999999 899999999999985

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=98.88  E-value=3.9e-09  Score=93.77  Aligned_cols=77  Identities=32%  Similarity=0.388  Sum_probs=72.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..++.+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  105 (167)
T 3v31_A           29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP  105 (167)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred             cCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCH
Confidence            45566677899999999999999999999999999999999999999999999999999999999999999999984

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=98.87  E-value=2.8e-09  Score=94.14  Aligned_cols=77  Identities=26%  Similarity=0.313  Sum_probs=68.1

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC-CCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-INLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~T~  608 (608)
                      .+..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++ ++.+|..|+|+
T Consensus        63 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~  140 (162)
T 1ihb_A           63 PDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA  140 (162)
T ss_dssp             TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcH
Confidence            344556677899999999999999999999999999999999999999999999999999999998 58999999884

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=98.87  E-value=2.3e-09  Score=104.09  Aligned_cols=71  Identities=27%  Similarity=0.262  Sum_probs=63.3

Q ss_pred             hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+.+|+|.|+..++.+.++.|+++|++++..|..|.||||+|+..|+.+++++|+++||+++.+|.+|.|+
T Consensus       191 ~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  261 (282)
T 1oy3_D          191 CGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSP  261 (282)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC------
T ss_pred             CCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCccccc
Confidence            37899999999999999999999999999999999999999999999999999999999999999999985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.87  E-value=5e-09  Score=105.25  Aligned_cols=72  Identities=25%  Similarity=0.365  Sum_probs=69.3

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....+++|.|+..++.+.+++|+++|++++..|..|+||||+|+..|+.+++++|+++||+++.+|.+|+|+
T Consensus       233 ~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~Tp  304 (368)
T 3jue_A          233 QDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDP  304 (368)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCH
Confidence            667899999999999999999999999999999999999999999999999999999999999999999984

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=98.86  E-value=4e-09  Score=99.06  Aligned_cols=75  Identities=21%  Similarity=0.302  Sum_probs=70.4

Q ss_pred             chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+....++++.|+..++.+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~tp   90 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTP   90 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            345567789999999999999999999999999999999999999999999999999999999999999999984

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=98.85  E-value=2.7e-09  Score=94.22  Aligned_cols=77  Identities=19%  Similarity=0.258  Sum_probs=71.2

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+....+++|.|+. ++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|.+|+|+
T Consensus        30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  106 (162)
T 1ihb_A           30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP  106 (162)
T ss_dssp             CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            345556677899999988 99999999999999999999999999999999999999999999999999999999984

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=98.85  E-value=3.3e-09  Score=101.37  Aligned_cols=77  Identities=17%  Similarity=0.151  Sum_probs=72.1

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+..+.+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus       150 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp  226 (253)
T 1yyh_A          150 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP  226 (253)
T ss_dssp             TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCH
Confidence            44556677899999999999999999999999999999999999999999999999999999999999999999984

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=98.85  E-value=3.6e-09  Score=96.43  Aligned_cols=78  Identities=23%  Similarity=0.354  Sum_probs=72.4

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  137 (192)
T 2rfm_A           60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETP  137 (192)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCH
T ss_pred             ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            344556678899999999999999999999999999999999999999999999999999999999999999999984

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=98.84  E-value=4.1e-09  Score=99.55  Aligned_cols=76  Identities=26%  Similarity=0.313  Sum_probs=68.0

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +..+....+|+|.|+..++.+.+++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++.+|..|+|+
T Consensus       111 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  187 (236)
T 1ikn_D          111 KATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP  187 (236)
T ss_dssp             GCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCG
T ss_pred             hccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCH
Confidence            44556678899999999999999999999999999887 89999999999999999999999999999999999885

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=98.84  E-value=1.1e-09  Score=99.06  Aligned_cols=80  Identities=10%  Similarity=-0.016  Sum_probs=70.4

Q ss_pred             cccccchhhhhhhhHhHHHhcCC------HHHHHHHHHcCCCCCCCCCCCc-hHHhHHHhcC-----cHHHHHHHHh-cC
Q 007323          529 TFHISKHEAELALKVNSAAYHGD------LYQLEGLIRAGADPNRTDYDGR-SPLHLAASRG-----YEEIMTFLIQ-KG  595 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~aa~~~~------~~~~~~Ll~~ga~~~~~d~~g~-tpL~~A~~~~-----~~~~v~~Ll~-~g  595 (608)
                      ...++..+..+.+|+|.|+..+.      .+.++.|+++|+++|..|..|. ||||.|+..+     +.+++++|++ +|
T Consensus        65 Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~g  144 (186)
T 3t8k_A           65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSG  144 (186)
T ss_dssp             TCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTT
T ss_pred             CCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcC
Confidence            45566777888999999998876      5789999999999999999999 9999999844     4579999999 99


Q ss_pred             CCCCCcCCCCCCC
Q 007323          596 VDINLKGNSIMQI  608 (608)
Q Consensus       596 a~~~~~~~~g~T~  608 (608)
                      ||+|.+|..|+|+
T Consensus       145 ad~~~~d~~G~Tp  157 (186)
T 3t8k_A          145 LQLLIKDKWGLTA  157 (186)
T ss_dssp             CCTTCCCTTSCCH
T ss_pred             CCCcccCCCCCCH
Confidence            9999999999985

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=98.84  E-value=3e-09  Score=104.26  Aligned_cols=74  Identities=18%  Similarity=0.184  Sum_probs=68.5

Q ss_pred             hhhhhhhhHhHHHhc---CCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~---~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+....+++|.|+..   +..+.+++|++.|++++..|..|+||||.|+..|+.+++++|+++|||++.+|.+|+|+
T Consensus       186 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~Tp  262 (301)
T 2b0o_E          186 AQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA  262 (301)
T ss_dssp             SCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCH
T ss_pred             cCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            355678899999987   88999999999999999999999999999999999999999999999999999999984

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=98.83  E-value=4.8e-09  Score=94.78  Aligned_cols=72  Identities=22%  Similarity=0.315  Sum_probs=68.1

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T~  608 (608)
                      +....+|+|.|+..++.+.++.+++ |++++..|..|+||||+|+..|+.+++++|+++|+++|.+| ..|+|+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tp  113 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA  113 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence            4567899999999999999999999 99999999999999999999999999999999999999998 889984

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=98.83  E-value=4.5e-09  Score=103.16  Aligned_cols=74  Identities=32%  Similarity=0.343  Sum_probs=70.3

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+....+|+|.|+..++.+.++.|++.|++++..|..|.||||+|+..|+.+++++|+++|+|++.+|..|.|+
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~  268 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA  268 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            44567799999999999999999999999999999999999999999999999999999999999999999996

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=98.83  E-value=5.9e-09  Score=99.79  Aligned_cols=74  Identities=19%  Similarity=0.200  Sum_probs=69.6

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCC-------------CchHHhHHHhcCcHHHHHHHHh---cCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD-------------GRSPLHLAASRGYEEIMTFLIQ---KGVDI  598 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~-------------g~tpL~~A~~~~~~~~v~~Ll~---~ga~~  598 (608)
                      .+..+.+|+|.|+..++.+.++.|+++|++++..+..             |.||||.|+..|+.+++++|++   +|+++
T Consensus        86 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~  165 (256)
T 2etb_A           86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASL  165 (256)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCT
T ss_pred             ccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCc
Confidence            4456889999999999999999999999999999876             9999999999999999999999   99999


Q ss_pred             CCcCCCCCCC
Q 007323          599 NLKGNSIMQI  608 (608)
Q Consensus       599 ~~~~~~g~T~  608 (608)
                      |.+|.+|+|+
T Consensus       166 n~~d~~g~Tp  175 (256)
T 2etb_A          166 EATDSLGNTV  175 (256)
T ss_dssp             TCCCTTSCCH
T ss_pred             CccCCCCCCH
Confidence            9999999985

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=98.83  E-value=5.5e-09  Score=98.32  Aligned_cols=55  Identities=15%  Similarity=0.370  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~  319 (608)
                      .|.+|+||+++|+|||||||++|.|..+|+++++.+++|+.++++.++.++..+.
T Consensus        93 ~~~~a~yf~~~t~tTvGyGd~~P~T~~Gk~f~~~~~l~Gi~~~~~~~~~~~~~l~  147 (280)
T 3ukm_A           93 DFTSALFFASTVLSTTGYGHTVPLSDGGKAFCIIYSVIGIPFTLLFLTAVVQRIT  147 (280)
T ss_dssp             SHHHHHHHHHHHHTTCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChhcchhheeeeeeccccCCcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4779999999999999999999999999999999999999999999998876543

>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}

Probab=98.83  E-value=8.2e-09  Score=97.17  Aligned_cols=54  Identities=19%  Similarity=0.304  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHhhccccCCcccCChh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          266 YITSMYASVVTMTTVGYGDVHAVNLR-------EMVFIMIYVSFDMILGAYLIGNMTALIV  319 (608)
Q Consensus       266 Y~~s~y~~~~t~ttvGygdi~p~~~~-------e~~~~~~~~~~g~~~~a~~i~~i~~~~~  319 (608)
                      |++|+||+++|+|||||||+.|.+..       +++++++++++|+.+++++++.+.++..
T Consensus       202 ~~da~y~~~iTltTvGyGD~~p~t~~~~~~~~l~r~~~~~~il~Gl~~~~~~~~~i~~~~~  262 (280)
T 3ukm_A          202 FLESFYFCFISLSTIGLGDYVPGEGYNQKFRELYKIGITCYLLLGLIAMLVVLETFCELHE  262 (280)
T ss_dssp             HHHHHHHHHHHHTTCCCCSCCSSCSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSHH
T ss_pred             hhhhhhheeeeeecccCCCCCCCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66999999999999999999999885       5999999999999999999999987654

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=98.83  E-value=5.1e-09  Score=99.09  Aligned_cols=72  Identities=26%  Similarity=0.305  Sum_probs=69.1

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus       148 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  219 (241)
T 1k1a_A          148 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP  219 (241)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCH
Confidence            456789999999999999999999999999999999999999999999999999999999999999999986

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=98.82  E-value=5.2e-09  Score=101.63  Aligned_cols=78  Identities=24%  Similarity=0.313  Sum_probs=72.0

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCC-CchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYD-GRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~-g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+....+|+|.|+..++.+.++.|+++|++++..+.. |.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp  228 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP  228 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCH
Confidence            45556677889999999999999999999999999999854 9999999999999999999999999999999999985

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=98.82  E-value=4.6e-09  Score=100.77  Aligned_cols=77  Identities=22%  Similarity=0.211  Sum_probs=70.9

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC--------------CCCchHHhHHHhcCcHHHHHHHHh---c
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD--------------YDGRSPLHLAASRGYEEIMTFLIQ---K  594 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d--------------~~g~tpL~~A~~~~~~~~v~~Ll~---~  594 (608)
                      .+..+....+|+|.|+..++.+.++.|+++|++++..+              ..|.||||.|+..|+.+++++|++   +
T Consensus        86 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~  165 (260)
T 3jxi_A           86 FRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHK  165 (260)
T ss_dssp             BCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred             ccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence            34445577899999999999999999999999999998              689999999999999999999999   9


Q ss_pred             CCCCCCcCCCCCCC
Q 007323          595 GVDINLKGNSIMQI  608 (608)
Q Consensus       595 ga~~~~~~~~g~T~  608 (608)
                      |+++|.+|..|+|+
T Consensus       166 ga~~~~~d~~g~Tp  179 (260)
T 3jxi_A          166 QADLRRQDSRGNTV  179 (260)
T ss_dssp             CCCTTCCCTTSCCH
T ss_pred             CCCCcccCCCCCcH
Confidence            99999999999985

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=98.82  E-value=3.5e-09  Score=111.80  Aligned_cols=73  Identities=18%  Similarity=0.205  Sum_probs=67.3

Q ss_pred             hhhhhhhHhHHHh---cCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          536 EAELALKVNSAAY---HGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~---~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +..+.+|||.|+.   .++.+.++.|+++|+++|..|..|+||||+|+..|+.+++++|+++|||+|++|.+|+|+
T Consensus       168 ~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp  243 (497)
T 3lvq_E          168 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETA  243 (497)
T ss_dssp             CCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCH
T ss_pred             ccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            5667899999954   899999999999999999999999999999999999999999999999999999999984

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=98.82  E-value=4.9e-09  Score=98.30  Aligned_cols=78  Identities=23%  Similarity=0.294  Sum_probs=72.1

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHH-hcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll-~~ga~~~~~~~~g~T~  608 (608)
                      .++..+..+.+|+|.|+..++.+.++.|++.| ++++..|..|+||||.|+..|+.+++++|+ ++|+|++.+|.+|+|+
T Consensus       132 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~  211 (228)
T 2dzn_A          132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA  211 (228)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBG
T ss_pred             CccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcH
Confidence            34455667789999999999999999999999 999999999999999999999999999999 8999999999999985

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=98.81  E-value=5.8e-09  Score=98.06  Aligned_cols=76  Identities=26%  Similarity=0.325  Sum_probs=71.1

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus       133 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  208 (231)
T 3aji_A          133 DAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTP  208 (231)
T ss_dssp             TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            3445567899999999999999999999999999999999999999999999999999999999999999999984

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=98.81  E-value=5.5e-09  Score=104.90  Aligned_cols=77  Identities=22%  Similarity=0.230  Sum_probs=72.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..++.+.++.|+++|++++..|..|+||||.|+..|+.+++++|+++|+|++.+|..|+|+
T Consensus       240 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~ta  316 (351)
T 3utm_A          240 VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTA  316 (351)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCh
Confidence            44556677899999999999999999999999999999999999999999999999999999999999999999984

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=98.80  E-value=4.5e-09  Score=99.51  Aligned_cols=72  Identities=24%  Similarity=0.324  Sum_probs=67.6

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tp  106 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP  106 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCH
Confidence            345789999999999999999999999999999999999999999999999999999999999999999984

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=98.79  E-value=1.1e-08  Score=102.19  Aligned_cols=73  Identities=25%  Similarity=0.318  Sum_probs=66.6

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC-CCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~-~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      .+.+..++|+.|+..++.+.++.|+++|+++|..+. .|+||||+|+..|+.++|++|+++||+++.++..|.|
T Consensus        21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~   94 (337)
T 4g8k_A           21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT   94 (337)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCc
Confidence            445678899999999999999999999999998875 5999999999999999999999999999998887765

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=98.78  E-value=8.4e-09  Score=96.34  Aligned_cols=77  Identities=17%  Similarity=0.151  Sum_probs=70.1

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus       118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~  194 (223)
T 2f8y_A          118 VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLP  194 (223)
T ss_dssp             TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             CcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCH
Confidence            44455667899999999999999999999999999999999999999999999999999999999999999999884

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=98.78  E-value=9.4e-09  Score=96.69  Aligned_cols=76  Identities=25%  Similarity=0.324  Sum_probs=68.6

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC-------------CCchHHhHHHhcCcHHHHHHHHhcCCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY-------------DGRSPLHLAASRGYEEIMTFLIQKGVDIN  599 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~-------------~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  599 (608)
                      +..+....+|+|.|+..++.+.++.|+++|++++..+.             .|.||||.|+..|+.+++++|+++|+|+|
T Consensus        69 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  148 (232)
T 2rfa_A           69 TSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR  148 (232)
T ss_dssp             CSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             cccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            44556778999999999999999999999999988765             79999999999999999999999999999


Q ss_pred             CcCCCCCCC
Q 007323          600 LKGNSIMQI  608 (608)
Q Consensus       600 ~~~~~g~T~  608 (608)
                      .+|..|+|+
T Consensus       149 ~~d~~g~t~  157 (232)
T 2rfa_A          149 AQDSLGNTV  157 (232)
T ss_dssp             CCCTTSCCH
T ss_pred             CCCCCCCCH
Confidence            999999984

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=98.78  E-value=7.2e-09  Score=97.81  Aligned_cols=77  Identities=25%  Similarity=0.333  Sum_probs=71.5

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..+..+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+|++.+|.+|+|+
T Consensus       137 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~  213 (237)
T 3b7b_A          137 INIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETP  213 (237)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCH
T ss_pred             CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCH
Confidence            34455667889999999999999999999999999999999999999999999999999999999999999999984

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=98.78  E-value=1.2e-08  Score=95.73  Aligned_cols=78  Identities=22%  Similarity=0.141  Sum_probs=72.3

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcC-CCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~T~  608 (608)
                      ..+..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++| ++++.+|..|+|+
T Consensus        99 ~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~  177 (228)
T 2dzn_A           99 DLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTP  177 (228)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCH
T ss_pred             ccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCH
Confidence            34555667789999999999999999999999999999999999999999999999999999999 9999999999984

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=98.78  E-value=8.2e-09  Score=86.56  Aligned_cols=70  Identities=37%  Similarity=0.505  Sum_probs=66.7

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +.+++|.|+..++.+.++.|++.|++++..+..|.||||.|+..++.+++++|+++|++++.+|..|+|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~   71 (126)
T 1n0r_A            2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTP   71 (126)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcH
Confidence            3578999999999999999999999999999999999999999999999999999999999999999884

>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix}

Probab=98.78  E-value=1.1e-08  Score=87.14  Aligned_cols=100  Identities=17%  Similarity=0.171  Sum_probs=64.2

Q ss_pred             HHHHHHHHHHHHHHHhchheeeccC--CCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccch
Q 007323           76 WTKFILIWAVYSSIFTPVEFGFFRG--LSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFI  153 (608)
Q Consensus        76 w~~~~~~~~~~~~~~~p~~~~f~~~--~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f~  153 (608)
                      |+.++.++++.+++++-+.......  ....+..+|.++.++|++|+++|+..+..              .++|+++ -+
T Consensus        23 f~~~i~~lil~sv~~v~~et~~~i~~~~~~~~~~id~~~~~iF~~Ey~lRl~~a~~--------------k~~f~~~-~i   87 (147)
T 2kyh_A           23 VELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVKK-TL   87 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------------HHHHHHH-ST
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCc--------------HHHHHHH-HH
Confidence            6666666666666555554332211  12246789999999999999999887632              2789998 69


Q ss_pred             hHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHH
Q 007323          154 IDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFF  193 (608)
Q Consensus       154 iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~  193 (608)
                      +|+++++|++..+...   ..++++|++|++|++|+.+..
T Consensus        88 iDllailP~~~~~~~~---~~lr~lRvlRllRv~Rllrl~  124 (147)
T 2kyh_A           88 YEIPALVPAGLLALIE---GHLAGLGLFRLVRLLRFLRIL  124 (147)
T ss_dssp             TTHHHHCCHHHHHHHH---HHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998665431   224444444444444444433

>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1

Probab=98.78  E-value=3.3e-09  Score=89.24  Aligned_cols=109  Identities=17%  Similarity=0.196  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHHHHHHhchheeec--cCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccc
Q 007323           75 AWTKFILIWAVYSSIFTPVEFGFF--RGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSF  152 (608)
Q Consensus        75 ~w~~~~~~~~~~~~~~~p~~~~f~--~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f  152 (608)
                      .++.+++++++.+.+..-+.....  ......+..+|.++.++|++|+++|+.++..              .++|++ |-
T Consensus         7 ~f~~~i~~lIlls~~~~~~et~~~~~~~~~~~l~~~d~~~~~iFt~E~~lRl~~~~~--------------~~~y~~-~n   71 (132)
T 1ors_C            7 LVELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD--------------PAGYVK-KT   71 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS--------------TTTTTT-TC
T ss_pred             HHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------------HHHHHH-HH
Confidence            456666666666655555433211  1112346789999999999999999887521              178999 77


Q ss_pred             hhHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          153 IIDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEK  198 (608)
Q Consensus       153 ~iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~  198 (608)
                      ++|+++++|++......+....++.+|++|++|++|+.++...++.
T Consensus        72 iiDllailp~~~~~~~~~~l~~lr~lRllRv~Rvlkl~r~~~~l~~  117 (132)
T 1ors_C           72 LYEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSK  117 (132)
T ss_dssp             GGGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            9999999999866544111223455666666777777666665544

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=98.77  E-value=1e-08  Score=99.22  Aligned_cols=75  Identities=23%  Similarity=0.237  Sum_probs=70.2

Q ss_pred             chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCC--------------CCchHHhHHHhcCcHHHHHHHHh---cCC
Q 007323          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDY--------------DGRSPLHLAASRGYEEIMTFLIQ---KGV  596 (608)
Q Consensus       534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~--------------~g~tpL~~A~~~~~~~~v~~Ll~---~ga  596 (608)
                      ..+....+|+|.|+..++.+.++.|+++|++++..+.              .|.||||.|+..|+.+++++|++   +|+
T Consensus        96 ~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga  175 (273)
T 2pnn_A           96 DSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA  175 (273)
T ss_dssp             STTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC
T ss_pred             cccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC
Confidence            3456788999999999999999999999999999987              79999999999999999999999   999


Q ss_pred             CCCCcCCCCCCC
Q 007323          597 DINLKGNSIMQI  608 (608)
Q Consensus       597 ~~~~~~~~g~T~  608 (608)
                      ++|.+|.+|+|+
T Consensus       176 d~~~~d~~g~tp  187 (273)
T 2pnn_A          176 DISARDSVGNTV  187 (273)
T ss_dssp             CTTCCCTTSCCH
T ss_pred             CceeeCCCCCcH
Confidence            999999999984

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.76  E-value=5.2e-09  Score=97.82  Aligned_cols=72  Identities=19%  Similarity=0.260  Sum_probs=68.0

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhc-CCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK-GVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~-ga~~~~~~~~g~T~  608 (608)
                      ....+++|.|+..++.+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++ |+++|.+|..|+|+
T Consensus        71 ~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tp  143 (222)
T 3ehr_A           71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTA  143 (222)
T ss_dssp             EEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCH
T ss_pred             cccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCH
Confidence            3456799999999999999999999999999999999999999999999999999998 99999999999984

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=98.76  E-value=9e-09  Score=100.94  Aligned_cols=77  Identities=26%  Similarity=0.371  Sum_probs=71.5

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||+|+..|+.+++++|+++|++++..|.+|.|+
T Consensus        66 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  142 (299)
T 1s70_B           66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP  142 (299)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            44556667899999999999999999999999999999999999999999999999999999999999999999884

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=98.76  E-value=5.9e-09  Score=100.49  Aligned_cols=77  Identities=29%  Similarity=0.461  Sum_probs=71.3

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+....+|++.++..+..+.++.|++.|++++..|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+|+
T Consensus       112 ~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~  188 (269)
T 4b93_B          112 AGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTA  188 (269)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBH
T ss_pred             cCccCCCCCCccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcH
Confidence            34445567789999999999999999999999999999999999999999999999999999999999999999984

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=98.76  E-value=8.6e-09  Score=97.86  Aligned_cols=72  Identities=22%  Similarity=0.315  Sum_probs=67.7

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC-CCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG-NSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~-~~g~T~  608 (608)
                      +....+++|.|+..++.+.++.|+. |++++..|..|+||||.|+..|+.+++++|+++|+++|.+| ..|+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~  114 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTA  114 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCH
Confidence            3567899999999999999999999 99999999999999999999999999999999999999998 789884

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=98.75  E-value=1.5e-08  Score=101.76  Aligned_cols=81  Identities=22%  Similarity=0.255  Sum_probs=68.1

Q ss_pred             ccccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          528 ITFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       528 ~~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      .....+..+..+.+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++..|..|+|
T Consensus        47 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t  126 (351)
T 3utm_A           47 LNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFT  126 (351)
T ss_dssp             TTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCC
Confidence            34445556677788899999889999999999999888888888899999999999999999999889999888888887


Q ss_pred             C
Q 007323          608 I  608 (608)
Q Consensus       608 ~  608 (608)
                      +
T Consensus       127 ~  127 (351)
T 3utm_A          127 P  127 (351)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=98.74  E-value=1.6e-08  Score=92.77  Aligned_cols=77  Identities=23%  Similarity=0.263  Sum_probs=70.7

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCchHHhHHHhcCc-----HHHHHHHHhcCCCCCCcCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGY-----EEIMTFLIQKGVDINLKGNSI  605 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~-----~~~v~~Ll~~ga~~~~~~~~g  605 (608)
                      .+..+....+|+|.|+..++.+.++.|++.| ++++..|..|.||||.|+..++     .+++++|+++|++++.+|..|
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g  178 (201)
T 3hra_A           99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSG  178 (201)
T ss_dssp             TTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTS
T ss_pred             cccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCC
Confidence            4455566788999999999999999999999 9999999999999999999887     999999999999999999999


Q ss_pred             CCC
Q 007323          606 MQI  608 (608)
Q Consensus       606 ~T~  608 (608)
                      +|+
T Consensus       179 ~t~  181 (201)
T 3hra_A          179 RTA  181 (201)
T ss_dssp             CCH
T ss_pred             CCH
Confidence            984

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=98.71  E-value=1.1e-08  Score=106.19  Aligned_cols=77  Identities=25%  Similarity=0.267  Sum_probs=71.9

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+..+.+|+|.|+..++.+.+++|+++|++++..|..|.||||.|+..|+.+++++|+++||+++.+|.+|+|+
T Consensus       304 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~  380 (437)
T 1n11_A          304 VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP  380 (437)
T ss_dssp             TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred             CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCH
Confidence            44555667899999999999999999999999999999999999999999999999999999999999999999984

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=98.71  E-value=2.1e-08  Score=97.70  Aligned_cols=76  Identities=24%  Similarity=0.277  Sum_probs=70.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..++.+.++.|++.|++++. +..|.||||.|+..|+.+++++|+++|+|++.+|.+|+|+
T Consensus       183 ~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~  258 (285)
T 3d9h_A          183 IDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRP  258 (285)
T ss_dssp             TTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            444556678999999999999999999999999995 8889999999999999999999999999999999999985

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=98.70  E-value=1.4e-08  Score=98.85  Aligned_cols=71  Identities=27%  Similarity=0.262  Sum_probs=34.4

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|
T Consensus        57 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t  127 (285)
T 3d9h_A           57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHT  127 (285)
T ss_dssp             CCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCC
T ss_pred             ccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence            33444444444444444444444444444444444444444444444444444444444444444444444

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.70  E-value=1.4e-08  Score=102.75  Aligned_cols=77  Identities=16%  Similarity=0.204  Sum_probs=66.4

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCC-----CCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGAD-----PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM  606 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~-----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  606 (608)
                      ++..+....+|+|.|+..++.+.++.|++.|++     ++..|..|+||||+|+..|+.+++++|+++|+|+|.+|..|+
T Consensus       166 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~  245 (364)
T 3ljn_A          166 PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHT  245 (364)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSC
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCC
Confidence            344556677889999999999999999998888     888888999999999999999999999999999999999988


Q ss_pred             CC
Q 007323          607 QI  608 (608)
Q Consensus       607 T~  608 (608)
                      |+
T Consensus       246 tp  247 (364)
T 3ljn_A          246 VP  247 (364)
T ss_dssp             CH
T ss_pred             CH
Confidence            84

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=98.70  E-value=2.7e-08  Score=92.87  Aligned_cols=77  Identities=25%  Similarity=0.219  Sum_probs=71.3

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        85 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  161 (223)
T 2f8y_A           85 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  161 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCH
T ss_pred             cccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCH
Confidence            34455667899999999999999999999999999999999999999999999999999999999999999999984

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=98.70  E-value=2.5e-08  Score=93.68  Aligned_cols=78  Identities=24%  Similarity=0.308  Sum_probs=61.0

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+....+|+|.|+..++.+.++.|+++|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus        65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~  142 (231)
T 3aji_A           65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA  142 (231)
T ss_dssp             CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            345555666778888888888888888888888888888888888888888888888888888888888888777763

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=98.69  E-value=1.1e-08  Score=97.70  Aligned_cols=77  Identities=25%  Similarity=0.219  Sum_probs=71.4

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+....+++|.|+..+..+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus       117 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tp  193 (253)
T 1yyh_A          117 LDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETP  193 (253)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCH
Confidence            34455667899999999999999999999999999999999999999999999999999999999999999999984

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=98.68  E-value=4.7e-08  Score=89.56  Aligned_cols=73  Identities=21%  Similarity=0.222  Sum_probs=38.8

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHH-HcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcC-CCCCCcCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGNSIMQ  607 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll-~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~T  607 (608)
                      .+....+|+|.|+..++.+.++.|+ ..+++++..|..|.||||.|+..|+.+++++|+++| ++++.+|..|+|
T Consensus        68 ~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t  142 (201)
T 3hra_A           68 QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYT  142 (201)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCC
Confidence            3334445555555555555555555 334455555555555555555555555555555555 555555555554

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=98.67  E-value=2.5e-08  Score=94.06  Aligned_cols=78  Identities=28%  Similarity=0.402  Sum_probs=61.1

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcC-CCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG-VDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~g~T~  608 (608)
                      .++..+....+|+|.|+..++.+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++| ++++..|..|+|+
T Consensus        36 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~  114 (237)
T 3b7b_A           36 NIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTP  114 (237)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCH
T ss_pred             CcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCH
Confidence            34445556677888888888888888888888888888888888888888888888888888877 7888888877773

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=98.66  E-value=1.8e-08  Score=100.21  Aligned_cols=77  Identities=17%  Similarity=0.106  Sum_probs=64.8

Q ss_pred             ccchhhhhhhhHhHHHh----cCCHHHHHHHHHcCC--------------------------------------------
Q 007323          532 ISKHEAELALKVNSAAY----HGDLYQLEGLIRAGA--------------------------------------------  563 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~----~~~~~~~~~Ll~~ga--------------------------------------------  563 (608)
                      ++..+..+.+|+|+|+.    .+..+.++.+++.++                                            
T Consensus       194 ~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~  273 (327)
T 1sw6_A          194 LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIA  273 (327)
T ss_dssp             GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHH
T ss_pred             ccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHH
Confidence            34455566778888887    778888887776532                                            


Q ss_pred             -CCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          564 -DPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       564 -~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                       +++..|..|+||||+|+..|+.+++++|+++|||++.+|.+|+|+
T Consensus       274 ~~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  319 (327)
T 1sw6_A          274 NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP  319 (327)
T ss_dssp             HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             hCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence             578889999999999999999999999999999999999999995

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=98.64  E-value=3.2e-08  Score=93.00  Aligned_cols=74  Identities=19%  Similarity=0.068  Sum_probs=68.5

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHH----HHHHhcCCCC------CCcCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIM----TFLIQKGVDI------NLKGNS  604 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~------~~~~~~  604 (608)
                      .+....+|+|.|+..++.+.++.|+++|++++..|..|+||||+|+..|+.+++    ++|+++|+++      +.+|..
T Consensus       117 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~  196 (232)
T 2rfa_A          117 LIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQ  196 (232)
T ss_dssp             SCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTT
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCC
Confidence            344678999999999999999999999999999999999999999999999988    9999999998      588999


Q ss_pred             CCCC
Q 007323          605 IMQI  608 (608)
Q Consensus       605 g~T~  608 (608)
                      |+|+
T Consensus       197 g~tp  200 (232)
T 2rfa_A          197 GLTP  200 (232)
T ss_dssp             SCCH
T ss_pred             CCCH
Confidence            9984

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=98.63  E-value=1.9e-08  Score=97.95  Aligned_cols=70  Identities=19%  Similarity=0.224  Sum_probs=62.6

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCC-CCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI-MQI  608 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g-~T~  608 (608)
                      +.+|+|.|+..++.+.++.|+++|++++..|..|+||||.|+..|+.+++++|+++|++++.+|..| .|+
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~  132 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTS  132 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCH
Confidence            5789999999999999999999999999999999999999999999999999999999999998888 563

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=98.63  E-value=4.6e-08  Score=92.40  Aligned_cols=80  Identities=16%  Similarity=0.156  Sum_probs=70.0

Q ss_pred             cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCC----CCCCcCCC
Q 007323          529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV----DINLKGNS  604 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga----~~~~~~~~  604 (608)
                      ...++..+....+|+|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|+    +++..|..
T Consensus        36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  115 (241)
T 1k1a_A           36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD  115 (241)
T ss_dssp             TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred             CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence            34456666778899999999999999999999999999999999999999999999999999999987    88888888


Q ss_pred             CCCC
Q 007323          605 IMQI  608 (608)
Q Consensus       605 g~T~  608 (608)
                      |+|+
T Consensus       116 g~t~  119 (241)
T 1k1a_A          116 GLTA  119 (241)
T ss_dssp             SCCH
T ss_pred             CCcH
Confidence            8874

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.62  E-value=2.9e-08  Score=100.72  Aligned_cols=74  Identities=22%  Similarity=0.339  Sum_probs=68.7

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+.+++|.|+..++.+.++.|++.| ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|+|+
T Consensus       275 ~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~  349 (373)
T 2fo1_E          275 EKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA  349 (373)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred             ccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCH
Confidence            3456678999999999999999999876 9999999999999999999999999999999999999999999984

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=98.62  E-value=1.5e-08  Score=96.85  Aligned_cols=70  Identities=20%  Similarity=0.162  Sum_probs=66.9

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHH---cCCCCCCCCCCCchHHhHHHh--cCcHH-------HHHHHHhcCCCC-------C
Q 007323          539 LALKVNSAAYHGDLYQLEGLIR---AGADPNRTDYDGRSPLHLAAS--RGYEE-------IMTFLIQKGVDI-------N  599 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~---~ga~~~~~d~~g~tpL~~A~~--~~~~~-------~v~~Ll~~ga~~-------~  599 (608)
                      +.+|+|.|+..++.+.++.|++   +|++++..|..|+||||+|+.  .++.+       ++++|+++|+++       +
T Consensus       136 g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~  215 (256)
T 2etb_A          136 GELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEE  215 (256)
T ss_dssp             CSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGG
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCccccccccc
Confidence            7899999999999999999999   999999999999999999998  78888       999999999999       8


Q ss_pred             CcCCCCCCC
Q 007323          600 LKGNSIMQI  608 (608)
Q Consensus       600 ~~~~~g~T~  608 (608)
                      .+|..|+|+
T Consensus       216 ~~d~~g~tp  224 (256)
T 2etb_A          216 ISNHQGLTP  224 (256)
T ss_dssp             CCCTTSCCH
T ss_pred             ccCCCCCCH
Confidence            999999984

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=98.61  E-value=3.2e-08  Score=96.32  Aligned_cols=66  Identities=9%  Similarity=0.081  Sum_probs=40.1

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCC-chHHhHHHhcCcHHHHHHHHhcCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDG-RSPLHLAASRGYEEIMTFLIQKGVDI  598 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g-~tpL~~A~~~~~~~~v~~Ll~~ga~~  598 (608)
                      +..+..+.+|+|.|+..++.+.++.|+++|++++..+..| .||||.|+..|+.+++++|+++|+++
T Consensus        89 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~  155 (285)
T 3kea_A           89 SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST  155 (285)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT
T ss_pred             CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc
Confidence            3344455566666666666666666666666666666655 46666666666666666666666555

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=98.60  E-value=4.3e-08  Score=101.80  Aligned_cols=78  Identities=21%  Similarity=0.236  Sum_probs=69.4

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+..+....+|+|.|+..++.+.+++|++.|++++..|..|.||||.|+..|+.+++++|+++|++++..|..|.|+
T Consensus        39 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~  116 (437)
T 1n11_A           39 SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP  116 (437)
T ss_dssp             CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcH
Confidence            445556667889999999999999999999999999999999999999999999999999999999999999999874

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=98.59  E-value=1.1e-07  Score=94.89  Aligned_cols=63  Identities=13%  Similarity=0.055  Sum_probs=30.9

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL  600 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  600 (608)
                      +..+..+.+|||+|+..++.++++.|+++|+++|..     +|||.|+..|+.++|++|+++||++|.
T Consensus       267 n~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~  329 (337)
T 4g8k_A          267 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDF  329 (337)
T ss_dssp             TCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC--
T ss_pred             cCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCC
Confidence            334444445555555555555555555555544432     255555555555555555555555544

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=98.58  E-value=3e-08  Score=95.03  Aligned_cols=72  Identities=21%  Similarity=0.155  Sum_probs=67.1

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHH---cCCCCCCCCCCCchHHhHHHhcCc---------HHHHHHHHhcCCCC------
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIR---AGADPNRTDYDGRSPLHLAASRGY---------EEIMTFLIQKGVDI------  598 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~---~ga~~~~~d~~g~tpL~~A~~~~~---------~~~v~~Ll~~ga~~------  598 (608)
                      ..+.+|+|.|+..++.+.++.|++   .|++++..|..|+||||+|+..++         .+++++|+++|+++      
T Consensus       138 ~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~  217 (260)
T 3jxi_A          138 YFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNL  217 (260)
T ss_dssp             CSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCG
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccch
Confidence            457899999999999999999999   999999999999999999998877         79999999999999      


Q ss_pred             -CCcCCCCCCC
Q 007323          599 -NLKGNSIMQI  608 (608)
Q Consensus       599 -~~~~~~g~T~  608 (608)
                       +.+|..|+|+
T Consensus       218 ~~~~d~~g~tp  228 (260)
T 3jxi_A          218 EALLNNDGLSP  228 (260)
T ss_dssp             GGCCCTTSCCH
T ss_pred             hhcccCCCCCH
Confidence             6799999984

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.57  E-value=1.4e-07  Score=91.45  Aligned_cols=73  Identities=26%  Similarity=0.291  Sum_probs=65.3

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +....+++|.|+..++.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++++.+|..|+|+
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  108 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTA  108 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCH
Confidence            4456789999999999999999999999999999999999999999999999999999999999999988874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=98.55  E-value=4.9e-08  Score=94.52  Aligned_cols=77  Identities=19%  Similarity=0.256  Sum_probs=66.5

Q ss_pred             ccchhhhhhhhHhHHH-----hcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCC
Q 007323          532 ISKHEAELALKVNSAA-----YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM  606 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa-----~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~  606 (608)
                      .+..+..+.+|++.++     ..+..+.++.++..|++.+..+..|+||||.|+..|+.+++++|+++|+|+|.+|.+|+
T Consensus       138 ~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~  217 (276)
T 4hbd_A          138 VDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGS  217 (276)
T ss_dssp             TTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred             CCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC
Confidence            3444556677888887     55777888888888888888888999999999999999999999999999999999999


Q ss_pred             CC
Q 007323          607 QI  608 (608)
Q Consensus       607 T~  608 (608)
                      |+
T Consensus       218 Tp  219 (276)
T 4hbd_A          218 TA  219 (276)
T ss_dssp             CH
T ss_pred             CH
Confidence            85

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=98.53  E-value=1.4e-07  Score=91.35  Aligned_cols=73  Identities=19%  Similarity=0.219  Sum_probs=61.2

Q ss_pred             ccccchhhhhhhhHhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcC
Q 007323          530 FHISKHEAELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG  602 (608)
Q Consensus       530 ~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  602 (608)
                      ..++..+..+.+|+|.|+..++.+.++.|++ .|++++..|..|.||||+|+..|+.+++++|+++||+++.+|
T Consensus       210 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d  283 (285)
T 1wdy_A          210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD  283 (285)
T ss_dssp             CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSS
T ss_pred             CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCccc
Confidence            3445556667788888888888888888888 788888888888889998888888888888888888888877

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=98.52  E-value=4.1e-08  Score=94.85  Aligned_cols=71  Identities=17%  Similarity=0.124  Sum_probs=66.7

Q ss_pred             hhhhhHhHHHhcCCHHHHHHHHH---cCCCCCCCCCCCchHHhHHHhcCc---------HHHHHHHHhcCCCCCC-----
Q 007323          538 ELALKVNSAAYHGDLYQLEGLIR---AGADPNRTDYDGRSPLHLAASRGY---------EEIMTFLIQKGVDINL-----  600 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~~~~~Ll~---~ga~~~~~d~~g~tpL~~A~~~~~---------~~~v~~Ll~~ga~~~~-----  600 (608)
                      ...+|+|.|+..++.+.+++|++   .|++++..|..|+||||+|+..|+         .+++++|+++|+++|.     
T Consensus       147 ~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~  226 (273)
T 2pnn_A          147 FGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLE  226 (273)
T ss_dssp             SCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGG
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccc
Confidence            57899999999999999999999   999999999999999999999888         8999999999999974     


Q ss_pred             --cCCCCCCC
Q 007323          601 --KGNSIMQI  608 (608)
Q Consensus       601 --~~~~g~T~  608 (608)
                        +|..|+|+
T Consensus       227 ~~~d~~g~Tp  236 (273)
T 2pnn_A          227 EITNRKGLTP  236 (273)
T ss_dssp             GCCCTTSCCH
T ss_pred             cccCCCCCCH
Confidence              89999984

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=98.51  E-value=1e-07  Score=96.31  Aligned_cols=75  Identities=15%  Similarity=0.148  Sum_probs=70.7

Q ss_pred             chhhhhhhhHhHHHhcC--CHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC-----CCCcCCCCC
Q 007323          534 KHEAELALKVNSAAYHG--DLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD-----INLKGNSIM  606 (608)
Q Consensus       534 ~~~~~~~~~L~~aa~~~--~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-----~~~~~~~g~  606 (608)
                      ..+....+++|.|+..+  +.+.++.|++.|++++..|..|.||||.|+..|+.+++++|+++|++     +|..|..|+
T Consensus       133 ~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          133 VKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             EEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             cCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            35566789999999999  99999999999999999999999999999999999999999999999     999999999


Q ss_pred             CC
Q 007323          607 QI  608 (608)
Q Consensus       607 T~  608 (608)
                      |+
T Consensus       213 t~  214 (364)
T 3ljn_A          213 SH  214 (364)
T ss_dssp             CT
T ss_pred             cH
Confidence            85

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=98.51  E-value=8.3e-08  Score=90.46  Aligned_cols=77  Identities=23%  Similarity=0.207  Sum_probs=68.8

Q ss_pred             ccchhh-hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCC--CcCCCCCCC
Q 007323          532 ISKHEA-ELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN--LKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~-~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~T~  608 (608)
                      ++..+. .+.+|+|.|+..++.+.+++|+++|++++..|..|.||||+|+..|+.+++++|+++||+..  .++.+|.|.
T Consensus       143 ~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~  222 (236)
T 1ikn_D          143 VNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES  222 (236)
T ss_dssp             TTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTC
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHH
Confidence            344444 67899999999999999999999999999999999999999999999999999999999876  677777763

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=98.50  E-value=7e-09  Score=103.51  Aligned_cols=54  Identities=24%  Similarity=0.391  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          267 ITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       267 ~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .+|+||+++|+||+||||+.|.|..+++++++++++|+.+++++++.+.+.+.+
T Consensus        47 ~~a~y~~~~t~tTvGyGd~~p~t~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~  100 (336)
T 1lnq_A           47 TVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFLIN  100 (336)
T ss_dssp             STTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTTTC--
T ss_pred             HHHHHHHHHHhhcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            389999999999999999999999999999999999999999999998877654

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=98.49  E-value=1.9e-07  Score=93.68  Aligned_cols=71  Identities=23%  Similarity=0.230  Sum_probs=66.6

Q ss_pred             hhhhhHhHHHhc-CCHHHHHHHHHcCCCCCCCC--CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          538 ELALKVNSAAYH-GDLYQLEGLIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       538 ~~~~~L~~aa~~-~~~~~~~~Ll~~ga~~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ...+++|.|+.. ++.+.++.|+.+|++++..+  ..|.||||.|+..|+.+++++|+++|+++|.+|..|+|+
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~Tp  271 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP  271 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            345789999999 99999999999999999988  889999999999999999999999999999999999984

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=98.48  E-value=4.8e-08  Score=97.14  Aligned_cols=79  Identities=14%  Similarity=0.057  Sum_probs=70.9

Q ss_pred             ccccc-hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCc---HHHHHHHHhcC-CCCCCcCCC
Q 007323          530 FHISK-HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGY---EEIMTFLIQKG-VDINLKGNS  604 (608)
Q Consensus       530 ~~i~~-~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~---~~~v~~Ll~~g-a~~~~~~~~  604 (608)
                      ..++. .+..+.+|||+|+..++.+.++.|+++|++++..|..|+||||+|+..|+   .++++.|++.+ ++++.+|..
T Consensus       121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~  200 (327)
T 1sw6_A          121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSM  200 (327)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTT
T ss_pred             CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCC
Confidence            44555 67788999999999999999999999999999999999999999999998   67888888876 889999999


Q ss_pred             CCCC
Q 007323          605 IMQI  608 (608)
Q Consensus       605 g~T~  608 (608)
                      |+|+
T Consensus       201 g~tp  204 (327)
T 1sw6_A          201 NRTI  204 (327)
T ss_dssp             CCCH
T ss_pred             CCCH
Confidence            9985

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=98.42  E-value=5.7e-07  Score=86.93  Aligned_cols=75  Identities=19%  Similarity=0.197  Sum_probs=66.6

Q ss_pred             chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCC------CCCCCCchHHhHHHhc---CcHHHHHHHHhcCCCCCCcCCC
Q 007323          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPN------RTDYDGRSPLHLAASR---GYEEIMTFLIQKGVDINLKGNS  604 (608)
Q Consensus       534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~------~~d~~g~tpL~~A~~~---~~~~~v~~Ll~~ga~~~~~~~~  604 (608)
                      ........+++.|+..++.+.+..++..|++++      ..|..|+||||.|+..   |+.+++++|+++|+++|.+|..
T Consensus       125 ~~~~~~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~  204 (278)
T 1dcq_A          125 ADTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGK  204 (278)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTT
T ss_pred             cccchhhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCC
Confidence            344556678999999999999999999999854      4578899999999999   8999999999999999999999


Q ss_pred             CCCC
Q 007323          605 IMQI  608 (608)
Q Consensus       605 g~T~  608 (608)
                      |+|+
T Consensus       205 g~Tp  208 (278)
T 1dcq_A          205 GSTA  208 (278)
T ss_dssp             CCCH
T ss_pred             CCCH
Confidence            9985

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.41  E-value=4.1e-07  Score=85.55  Aligned_cols=70  Identities=33%  Similarity=0.455  Sum_probs=58.7

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..++++.|+..++.+.++.|++.|++++..+..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~  145 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP  145 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcH
Confidence            5678888888888888888888888888888888888888888888888888888888888888888763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=98.40  E-value=1.8e-07  Score=94.78  Aligned_cols=78  Identities=22%  Similarity=0.236  Sum_probs=71.8

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcC---CCCCCcCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG---VDINLKGNSIMQ  607 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g---a~~~~~~~~g~T  607 (608)
                      .++..+..+.+|+|.|+..++.+.+++|+++|++++..|..|.||||.|+..|+.+++++|+++|   ++++..|..|+|
T Consensus       158 ~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t  237 (373)
T 2fo1_E          158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT  237 (373)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCC
T ss_pred             CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCC
Confidence            45556677889999999999999999999999999999999999999999999999999999988   899999999988


Q ss_pred             C
Q 007323          608 I  608 (608)
Q Consensus       608 ~  608 (608)
                      +
T Consensus       238 ~  238 (373)
T 2fo1_E          238 A  238 (373)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=98.34  E-value=2.8e-07  Score=90.21  Aligned_cols=67  Identities=18%  Similarity=0.143  Sum_probs=62.1

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDI  598 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  598 (608)
                      ++..+..+.+|||+|+..++.+.+++|++.|++++..|..|.||||+|+..|+.+++++|+++|++.
T Consensus       219 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          219 LDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGT  285 (301)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC
Confidence            4455677889999999999999999999999999999999999999999999999999999999873

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=98.34  E-value=6.4e-07  Score=84.24  Aligned_cols=77  Identities=19%  Similarity=0.201  Sum_probs=68.8

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+++|.|+..++.+.++.|++.|++++..+ ..|.||||.|+..|+.+++++|+++|++++.+|..|.|+
T Consensus        35 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~  112 (240)
T 3eu9_A           35 VRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSC  112 (240)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCH
Confidence            44455667889999999999999999999999988665 449999999999999999999999999999999999874

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=98.34  E-value=7.7e-07  Score=72.55  Aligned_cols=61  Identities=23%  Similarity=0.372  Sum_probs=56.1

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHH
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL  591 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~L  591 (608)
                      .++..+....+++|.|+..++.+.+++|+++|++++..|..|+||||+|+..|+.+++++|
T Consensus        49 ~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           49 DVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHHcCCHHHHHHh
Confidence            3455667788999999999999999999999999999999999999999999999999986

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=98.00  E-value=9.8e-07  Score=88.88  Aligned_cols=70  Identities=19%  Similarity=0.064  Sum_probs=53.4

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCC---CCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCC--cCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL--KGNSIMQ  607 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~---~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~--~~~~g~T  607 (608)
                      ....+|+|.|+..|+.+++++|+++|+++   +..+.+ .||||.|+..|+.+++++|+++|++++.  .|.+|+|
T Consensus       126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~T  200 (376)
T 2aja_A          126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY  200 (376)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCC
Confidence            34556899999999999999999988752   222222 8899999999999999999999988776  6655554

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=97.50  E-value=1.2e-05  Score=80.92  Aligned_cols=57  Identities=23%  Similarity=0.267  Sum_probs=43.0

Q ss_pred             hhhHhHHHhcCCHHHHHHHHHcCCCCCC--CCCCCchHHhHHH-hcCcHHHHHHHHhcCC
Q 007323          540 ALKVNSAAYHGDLYQLEGLIRAGADPNR--TDYDGRSPLHLAA-SRGYEEIMTFLIQKGV  596 (608)
Q Consensus       540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~--~d~~g~tpL~~A~-~~~~~~~v~~Ll~~ga  596 (608)
                      .+|+|.|+..|+.+++++|+++|++++.  .|..|.||||.|+ ..|+.+++++|+++|+
T Consensus       164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          164 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence            6777777777787888877777777665  6666777777777 7777777777776654

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=87.44  E-value=0.72  Score=51.34  Aligned_cols=56  Identities=16%  Similarity=0.249  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          264 KSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       264 ~~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .....++||++.++++.| ++..|.+...|++.++++++++++.+...+++++.+..
T Consensus       562 ~~~~~~~~~~~~~l~~~g-~~~~p~~~~~R~~~~~w~~~~lil~~~Yta~L~s~Lt~  617 (823)
T 3kg2_A          562 FGIFNSLWFSLGAFMQQG-ADISPRSLSGRIVGGVWWFFTLIIISSYTANLAAFLTV  617 (823)
T ss_dssp             HHHHHHHHHTTTTSCC-------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcC-CCcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            456689999999999999 88999999999999999999999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	608
d1q3ea_	193	b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus mu	6e-16
d1cx4a1	136	b.82.3.2 (A:130-265) Regulatory subunit of Protein	3e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	8e-10
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d1ne6a2	132	b.82.3.2 (A:245-376) Regulatory subunit of Protein	2e-14
d1ne6a1	136	b.82.3.2 (A:109-244) Regulatory subunit of Protein	3e-14
d1cx4a2	147	b.82.3.2 (A:266-412) Regulatory subunit of Protein	4e-14
d1wgpa_	137	b.82.3.2 (A:) Probable cyclic nucleotide-gated ion	3e-12
d1vp6a_	133	b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizo	1e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	5e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	0.002
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-11
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-06
d1o7fa2	155	b.82.3.2 (A:13-167) Regulatory domain of Epac2, do	7e-11
d2gaua2	142	b.82.3.2 (A:10-151) Transcriptional regulator PG03	9e-11
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-10
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-04
d1i5za2	132	b.82.3.2 (A:6-137) Catabolite gene activator prote	2e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	6e-10
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-05
d1lnqa2	80	f.14.1.1 (A:19-98) Potassium channel-related prote	8e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-10
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-06
d1o7fa3	124	b.82.3.2 (A:322-445) Regulatory domain of Epac2, d	8e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-09
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	1e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-08
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-04
d1zyba2	147	b.82.3.2 (A:1-147) Probable transcription regulato	4e-08
d2oz6a2	134	b.82.3.2 (A:9-142) Cyclic AMP receptor-like protei	5e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	6e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	7e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-07
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	6e-07
d1r3jc_	103	f.14.1.1 (C:) Potassium channel protein {Streptomy	5e-06
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	2e-05
d1xl4a2	116	f.14.1.1 (A:23-138) Inward rectifier potassium cha	1e-05
d1p7ba2	116	f.14.1.1 (A:36-151) Inward rectifier potassium cha	1e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	0.002
d1o5la1	129	b.82.3.2 (A:1-129) CRP-like transcriptional regula	8e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	1e-04

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Length = 193

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.3 bits (181), Expect = 6e-16
 Identities = 41/203 (20%), Positives = 88/203 (43%), Gaps = 12/203 (5%)

Query: 322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYESSYTEAS-VLQDIPISIRAKI 380
           S   ++++K   + +Y++ ++L  D R +I  +   +Y+    +   +L ++   +R +I
Sbjct: 2   SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEI 61

Query: 381 SQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLE 440
                   +  +PLF      F+  ++ +L  E F PG+ I+ +G +  ++YF+  G + 
Sbjct: 62  VNFNCRKLVASMPLFANADPNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVV- 120

Query: 441 EVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIY 500
                     +    L   S FGE+ +L    +  +V+    CRL  +   +F  +++ Y
Sbjct: 121 ----SVLTKGNKEMKLSDGSYFGEICLLTRGRRTASVRADTYCRLYSLSVDNFNEVLEEY 176

Query: 501 FCDGRKVLTNLLQGKESDLRLKQ 523
               R   T  +       RL +
Sbjct: 177 PMMRRAFETVAID------RLDR 193

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.6 bits (172), Expect = 3e-15
 Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 1/110 (0%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
            + + LFK    E ++Q++  + E+    GE ++++G+  D  Y +  G  +     +  
Sbjct: 18  CKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYVKCDGV 77

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIID 498
                +Y     SFGE++++ N P+  T+       L  +D+ +F  II 
Sbjct: 78  GRCVGNY-DNRGSFGELALMYNTPRAATITATSPGALWGLDRVTFRRIIV 126

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (181), Expect = 1e-14
 Identities = 19/59 (32%), Positives = 34/59 (57%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           A++ G L  ++ L++ GA PN ++    +PLH+AA  G+ E+  +L+Q    +N K   
Sbjct: 7   ASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKD 65

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.8 bits (141), Expect = 8e-10
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL---IQKGVDINLKG 602
           AA  G    +  L++ GA PN    DG +PL +A   GY  +   L     +   + +  
Sbjct: 337 AAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

Query: 603 NSIMQI 608
              M  
Sbjct: 397 KHRMSF 402

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 16/59 (27%), Positives = 28/59 (47%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           AA +G +   E L+   A PN    +G +PLH+A      +I+  L+ +G   +    +
Sbjct: 139 AAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWN 197

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 16/62 (25%), Positives = 28/62 (45%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSI 605
           AA  G     + L++  A  N    D ++PLH AA  G+  ++  L++   + NL   + 
Sbjct: 40  AARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAG 99

Query: 606 MQ 607
             
Sbjct: 100 HT 101

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 7e-08
 Identities = 18/56 (32%), Positives = 33/56 (58%)

Query: 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           ++G++  ++ L++  AD N     G SPLH AA +G+ +I+T L++ G   N   +
Sbjct: 306 HYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 361

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 1e-04
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 575 PLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           PLH+A+  G+  I+  L+Q+G   N+   
Sbjct: 3   PLHVASFMGHLPIVKNLLQRGASPNVSNV 31

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 17/54 (31%), Positives = 27/54 (50%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA  G    +  L+   A+ N  +  G +PLHL A  G+  +   LI+ GV ++
Sbjct: 238 AAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD 291

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-04
 Identities = 15/48 (31%), Positives = 28/48 (58%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           A +H +L  ++ L+  G  P+   ++G +PLH+AA +   E+   L+Q
Sbjct: 172 AVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 219

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 4e-04
 Identities = 15/58 (25%), Positives = 24/58 (41%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           AA  G +  +  L+   A        G +PLH+AA  G   +   L+++    N  G 
Sbjct: 106 AAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 163

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 68.7 bits (167), Expect = 2e-14
 Identities = 24/125 (19%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKL-EEVGIEE 446
           ++ KV + +         +   L    F  G+ I+ +G   D+ + +  G         E
Sbjct: 3   FLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSE 62

Query: 447 NGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK 506
           N     V  L P+  FGE+++L N P+  TV      + +++D+  F  ++       ++
Sbjct: 63  NEEFVEVGRLGPSDYFGEIALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKR 122

Query: 507 VLTNL 511
            +   
Sbjct: 123 NIQQY 127

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Length = 136

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 67.8 bits (165), Expect = 3e-14
 Identities = 25/109 (22%), Positives = 51/109 (46%), Gaps = 5/109 (4%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           IEK  LF        + I   +    F+ GE ++++G+  D  Y +  G+     ++   
Sbjct: 22  IEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGE-----MDVYV 76

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNII 497
             ++ + +    SFGE++++   P+  TV+     +L  ID+ S+  I+
Sbjct: 77  NNEWATSVGEGGSFGELALIYGTPRAATVKAKTNVKLWGIDRDSYRRIL 125

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.5 bits (164), Expect = 4e-14
 Identities = 21/132 (15%), Positives = 52/132 (39%), Gaps = 6/132 (4%)

Query: 388 YIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
           +IE +P  K        ++V  +  + +  GE I+ +G+  D  + V  G++      + 
Sbjct: 3   FIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKG 62

Query: 448 G------TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYF 501
                      ++       FGE++++ N P+  +       + L +D Q+F  ++    
Sbjct: 63  KSDIEENGAVEIARCLRGQYFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCM 122

Query: 502 CDGRKVLTNLLQ 513
              ++ +    +
Sbjct: 123 EIMKRNIATYEE 134

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 137

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 62.3 bits (150), Expect = 3e-12
 Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 10/122 (8%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           + +VPLF+      ++ I  RL    F     ++ +G+ V+++ F+  G+LE V  +   
Sbjct: 8   VRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGR 67

Query: 449 TEDYVSYLHPN-SSFGEVSILCNIPQP---------YTVQVCELCRLLRIDKQSFTNIID 498
           +  Y   L       G+  +   +             TV+         +       +  
Sbjct: 68  SGFYNRSLLKEGDFCGDELLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVAS 127

Query: 499 IY 500
            +
Sbjct: 128 QF 129

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Length = 133

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

 Score = 60.5 bits (146), Expect = 1e-11
 Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 7/125 (5%)

Query: 389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENG 448
           +  VPLF+      + +IV  L       G VI   G   D+++FV  G         + 
Sbjct: 13  VAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEG-------SVSV 65

Query: 449 TEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVL 508
                  L P + FGE++++   P+  TV       LL +    F  +            
Sbjct: 66  ATPNPVELGPGAFFGEMALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFR 125

Query: 509 TNLLQ 513
              L+
Sbjct: 126 KTALE 130

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.7 bits (151), Expect = 2e-11
 Identities = 12/44 (27%), Positives = 21/44 (47%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLK 601
           L +   + N TD DG++ L LA     ++I   L ++G   +  
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG 282

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-08
 Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 556 EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLI-QKGVDINLKGN 603
             L+  GAD N     G++PL LA  + +  ++  L+ Q+ ++IN   +
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 546 AAYHGDLYQLEGLIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           A  + D+  ++ L+  GA+ N + +  G +PLH A     E+I+  L++
Sbjct: 12  AVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDY----------DGRSPLHLAASRGYEEIMTFLIQK- 594
           AA +G +  L+ L + GA+ N               G + L  AA +G+ E++  L+ + 
Sbjct: 112 AAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM 171

Query: 595 GVDINLKGN 603
           G D+N   N
Sbjct: 172 GADVNACDN 180

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 5e-04
 Identities = 5/33 (15%), Positives = 14/33 (42%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           +    L  A      +++  L++ G ++N +  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE 36

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 0.002
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 546 AAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLA----ASRGYEEIMTFLIQKGVDINL 600
           AA  G +  L+ L+   GAD N  D  GR+ L  A         E I   L+  G D+N+
Sbjct: 155 AAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV 214

Query: 601 KGN 603
           +G 
Sbjct: 215 RGE 217

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 6e-11
 Identities = 18/56 (32%), Positives = 22/56 (39%)

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKG 602
                   LE L++AGADP    Y GR+PL  A  R    +   L   G      G
Sbjct: 200 VEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 9/34 (26%), Positives = 13/34 (38%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
                DG + LHLA    +E  + FL+       
Sbjct: 3   GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE 36

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 9e-06
 Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 3/48 (6%)

Query: 546 AAYHGDLYQLEGLIRAGADP---NRTDYDGRSPLHLAASRGYEEIMTF 590
           A  H     L+ L+   A     +  +  G++ LHLAA  G    +  
Sbjct: 16  AVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 155

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.7 bits (141), Expect = 7e-11
 Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 3/126 (2%)

Query: 377 RAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCL 436
           R+     +    ++ V  F+      + QI +  + E    G  +  +G++    Y V  
Sbjct: 14  RSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLA 73

Query: 437 GKLEEVGI--EENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFT 494
           G L+        +     +  L   ++FGE  IL N P+  T+   E   LLRI+++ F 
Sbjct: 74  GSLDVKVSETSSHQDAVTICTLGIGTAFGES-ILDNTPRHATIVTRESSELLRIEQEDFK 132

Query: 495 NIIDIY 500
            + + Y
Sbjct: 133 ALWEKY 138

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Length = 142

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

 Score = 57.9 bits (139), Expect = 9e-11
 Identities = 17/136 (12%), Positives = 42/136 (30%), Gaps = 6/136 (4%)

Query: 394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYV 453
           ++   + E    +   +          +  +G++ + L+++  GK++ +     G     
Sbjct: 8   VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHIS 67

Query: 454 SYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ 513
             + P   FG            T    E  ++L I  ++   ++       R  L  L +
Sbjct: 68  RIVKPGQFFGMRPYFAEETCSSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK 127

Query: 514 GKESDLRLKQLQSDIT 529
                  L   +    
Sbjct: 128 ------ELGYAERRTV 137

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 60.7 bits (146), Expect = 1e-10
 Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 7/126 (5%)

Query: 486 LRIDKQSFTNIIDIYFCDGRKV--LTNLLQGKESDLRLKQLQSDITFHISKHEAELALKV 543
           L +   S+   I I+    + +  +  LL    +       Q     H    ++E+   V
Sbjct: 37  LSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFV 96

Query: 544 NSAAYHGDLYQLE---GLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINL 600
             AA  G    L+    L+ +         +      LAA  G+  ++  L +      +
Sbjct: 97  --AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIM 154

Query: 601 KGNSIM 606
                 
Sbjct: 155 AMIQAE 160

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 42.2 bits (98), Expect = 1e-04
 Identities = 8/53 (15%), Positives = 12/53 (22%), Gaps = 5/53 (9%)

Query: 546 AAYHGDLYQLEGLIRAGADP-----NRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
                 L  +  L+                D    L LA   G +     L+ 
Sbjct: 286 RNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 11/118 (9%), Positives = 35/118 (29%), Gaps = 26/118 (22%)

Query: 512 LQGKESDLRLKQLQSDITFHISKHEAE--------------LALKVNSAAYHGDLYQL-- 555
           ++  E+D +L+ +   +  ++ +H                 + + +        + QL  
Sbjct: 7   IENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLC 66

Query: 556 -------EGLIRAGADPNRTDYDGRSPLHLAASRGYE---EIMTFLIQKGVDINLKGN 603
                      +  +D ++          +AA  G     + +  L+     + +   
Sbjct: 67  LYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQA 124

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 39.9 bits (92), Expect = 6e-04
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           AA +G L+ L  L              +      LAA  G+  ++  L +      
Sbjct: 133 AAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEA 188

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 132

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 20/131 (15%), Positives = 49/131 (37%), Gaps = 7/131 (5%)

Query: 399 SSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHP 458
           +   +   +   H   +     ++ +G   + LY++  G +  +  +E G E  +SYL+ 
Sbjct: 2   TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQ 61

Query: 459 NSSFGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKES 517
               GE+ +     +    V+    C +  I  + F  +I +      ++   + +    
Sbjct: 62  GDFIGELGLFEEGQERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR---- 117

Query: 518 DLRLKQLQSDI 528
             RL+     +
Sbjct: 118 --RLQVTSEKV 126

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 58.2 bits (139), Expect = 6e-10
 Identities = 11/48 (22%), Positives = 19/48 (39%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           AA  G +  +  LI+ GA     D    +   LA +  +  I+    +
Sbjct: 228 AAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.9 bits (120), Expect = 2e-07
 Identities = 14/43 (32%), Positives = 27/43 (62%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
           G++ ++ D DG++P+ LAA  G  E++ +LIQ+G  +     +
Sbjct: 211 GSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDAT 253

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 14/66 (21%), Positives = 18/66 (27%), Gaps = 9/66 (13%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL--------IQKGVD 597
               G     E + R   +        R+ LH  AS    E    L        I  G D
Sbjct: 8   TEAAGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGAD 66

Query: 598 INLKGN 603
           +N    
Sbjct: 67  VNAMDC 72

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Length = 80

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

 Score = 53.2 bits (128), Expect = 8e-10
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALI 318
           S+  S+Y + VT+ TVGYGD        M F +  +   +   A  +  +   +
Sbjct: 27  SWTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLEFL 80

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.1 bits (139), Expect = 9e-10
 Identities = 20/90 (22%), Positives = 30/90 (33%), Gaps = 3/90 (3%)

Query: 518 DLRLKQLQSDITFHISKHEAELALKVNSAAYHGDLYQLEGLI---RAGADPNRTDYDGRS 574
           D+ +  +       I     E   K N          LE L          N  D +G +
Sbjct: 202 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDT 261

Query: 575 PLHLAASRGYEEIMTFLIQKGVDINLKGNS 604
            L++AA  G   I+  L+  G D  +   S
Sbjct: 262 CLNIAARLGNISIVDALLDYGADPFIANKS 291

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.0 bits (136), Expect = 2e-09
 Identities = 17/109 (15%), Positives = 39/109 (35%), Gaps = 6/109 (5%)

Query: 503 DGRKVLTNLLQGKESDLRLKQLQSDITFHISKHEAELALKVNS---AAYHGDLYQL-EGL 558
           + +  L   LQ +     ++++ + +    S   +E           ++   L ++ +  
Sbjct: 34  EQKMKLEAFLQ-RLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAF 92

Query: 559 IRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIM 606
                + N   D  G +PLH   S    E++  L++ G +     N   
Sbjct: 93  PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGE 141

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 11/35 (31%), Positives = 18/35 (51%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAA 580
           AA  G++  ++ L+  GADP   +  G  P+   A
Sbjct: 266 AARLGNISIVDALLDYGADPFIANKSGLRPVDFGA 300

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 124

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.1 bits (124), Expect = 8e-09
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 6/114 (5%)

Query: 389 IEKVPLFKGCSSEFINQIVIRL-HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEEN 447
           +  +      S+    ++   L  E     G V+  +G      Y +     +       
Sbjct: 12  LLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIIL----KGSVNVVI 67

Query: 448 GTEDYVSYLHPNSSFGEVSILCNIPQPYTVQ-VCELCRLLRIDKQSFTNIIDIY 500
             +  V  LH    FG+++++ + P+  ++    + C  LR+DK+ F  I+   
Sbjct: 68  YGKGVVCTLHEGDDFGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDV 121

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 55.1 bits (131), Expect = 8e-09
 Identities = 21/56 (37%), Positives = 27/56 (48%)

Query: 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
             G    L+ LI+A  D N  DYDG +PLH AA  G EE    L++   D+     
Sbjct: 208 AKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNK 263

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 545 SAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQK 594
           +A   GD  ++  L+  GAD N  + DG + LH A      +++ FL++ 
Sbjct: 46  AACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN 95

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 6/55 (10%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL--IQKGVDI 598
           AA+ G       L+    D    +  G++   +A     E+I+ +L  +QK  ++
Sbjct: 239 AAHWGKEEACRILVENLCDMEAVNKVGQTAFDVAD----EDILGYLEELQKKQNL 289

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.0 bits (97), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 17/37 (45%)

Query: 567 RTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           +  +D  +    A S G  E +  L+++G DIN    
Sbjct: 35  KVKFDDGAVFLAACSSGDTEEVLRLLERGADINYANV 71

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 1e-08
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIM 588
           A+  G L  +  L+R+GAD +  +    +PL +A SR   +I+
Sbjct: 184 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-05
 Identities = 19/58 (32%), Positives = 31/58 (53%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A  +  L  ++ L++ GA+ N   Y G S LH A+ RG   ++  L++ G D +LK  
Sbjct: 151 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 208

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 571 DGRSPLHLAASRGYEEIMTFLI----QKGVDINLKGN 603
           DG +PLH+A  +G    +  L+    Q G ++++  N
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNN 38

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 8e-04
 Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 546 AAYHGDL----YQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           A   G+L      +    + G + +  +   ++PLHLA       ++  L+  G    
Sbjct: 10  AVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM 67

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Length = 147

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

 Score = 50.4 bits (119), Expect = 4e-08
 Identities = 26/144 (18%), Positives = 49/144 (34%), Gaps = 9/144 (6%)

Query: 388 YIEKVPLFKGCSSEFINQIV--IRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIE 445
            + ++PLF+G   E    I+  ++LH      GE I++ GN   QL F+  G++  V   
Sbjct: 7   TLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNA 66

Query: 446 ENGTEDYVSYLHPNSSFGEVS-ILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDG 504
           +      +  +         S    N     +         + I K    + +  Y    
Sbjct: 67  KENIYTVIEQIEAPYLIEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFR 126

Query: 505 RKVLTNLLQGKESDLRLKQLQSDI 528
              +  +        R + L S +
Sbjct: 127 LNYMNIVSN------RAQNLYSRL 144

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Length = 134

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 49.8 bits (118), Expect = 5e-08
 Identities = 19/132 (14%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNS 460
           + +++++   H   +     I+  G+  + L+F+  G +  +  +++G E  + YL+   
Sbjct: 3   KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGD 62

Query: 461 SFGEVSIL----CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKE 516
            FGE+ +         +   V+    C +  I    F  +          + + +     
Sbjct: 63  FFGELGLFEKEGSEQERSAWVRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD--- 119

Query: 517 SDLRLKQLQSDI 528
              RL++    +
Sbjct: 120 ---RLRKTTRKV 128

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 6e-08
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 559 IRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           ++ GAD NR  Y G SP  L   R    I   L Q  ++
Sbjct: 165 LKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 571 DGRSPLHLAASRGY----EEIMTFLIQKGVDINLKGN 603
           DG S LHLA          E++  +      +N + N
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN 37

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 0.003
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 4/49 (8%)

Query: 546 AAYHGD----LYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTF 590
           A  H +    +  +  +    A  N  +   ++PLHLA      EI   
Sbjct: 9   AIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEA 57

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.6 bits (119), Expect = 1e-07
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
           L+   A+   TD+  R P  +A+ R + +I+  L
Sbjct: 175 LLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.3 bits (108), Expect = 3e-06
 Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)

Query: 558 LIRAGADPN-RTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           L+  GA+ N   D  G + LHLAA     +    L+ 
Sbjct: 8   LLAQGAELNATMDKTGETSLHLAARFARADAAKRLLD 44

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 16/46 (34%), Positives = 26/46 (56%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           L+  GA  N  + +G +PLH AAS+   EI   L++ G + + K +
Sbjct: 89  LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 134

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 7e-07
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 541 LKVNSAAYHGDLYQL-EGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTF 590
           L V + AY G L +L E ++   +   RTD D R+ LH A S G+ EI+ F
Sbjct: 5   LMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEF 55

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 1e-06
 Identities = 8/46 (17%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 548 YHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
               + + + L+  GA     + + ++PL +A   G   I+  +++
Sbjct: 178 DEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE 222

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 12/57 (21%), Positives = 26/57 (45%)

Query: 547 AYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           A          L+  GA+P+  D+   + +H AA++G  +++  L+      N++  
Sbjct: 111 ASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDT 167

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 4e-07
 Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 3/40 (7%)

Query: 558 LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD 597
           + + GA+ +  D  G     +A +   E++  F +   VD
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.7 bits (114), Expect = 6e-07
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 546 AAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
           A    + ++++ L+ +  +   + D DGR PLH + S    EI +FL+ K 
Sbjct: 7   ACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Length = 103

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 43.4 bits (102), Expect = 5e-06
 Identities = 14/65 (21%), Positives = 28/65 (43%)

Query: 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVKG 321
              +Y  +++ SV T TTVGYGD++ V L      ++ +   +     +   +    V  
Sbjct: 37  QLITYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVGR 96

Query: 322 SKTEK 326
            +  +
Sbjct: 97  EQERR 101

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 6e-06
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 561 AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ 593
           A +D +R D  G +PL LA  RG ++++  L  
Sbjct: 122 AESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 7e-06
 Identities = 8/34 (23%), Positives = 12/34 (35%)

Query: 562 GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
            A     +  G +PL +A    +E     L Q  
Sbjct: 104 KASIEIANESGETPLDIAKRLKHEHCEELLTQAL 137

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 545 SAAYHGDLYQLEGLIRAGADPN------RTDYDGRSPLHLAA---SRGYEEIMTFLIQKG 595
            A    D++ L      G D               + LHLA     R    I+ FL+Q  
Sbjct: 12  EAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS 71

Query: 596 VDINLKGNSIMQ 607
            +++ +      
Sbjct: 72  GNLDKQTGKGST 83

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%)

Query: 262 FWKSYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320
              S+  + + SV TM T+GYG +  +       + +     M+  A     + A   +
Sbjct: 57  RPGSFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFTR 115

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Length = 116

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

 Score = 42.3 bits (99), Expect = 1e-05
 Identities = 14/56 (25%), Positives = 25/56 (44%)

Query: 265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK 320
            ++ + + SV T+ TVGYGD+H   +       + +   M   A   G + A   +
Sbjct: 61  GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFAR 116

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 4e-05
 Identities = 6/30 (20%), Positives = 13/30 (43%)

Query: 566 NRTDYDGRSPLHLAASRGYEEIMTFLIQKG 595
              ++ G +   LA   G  E+++ +   G
Sbjct: 127 GHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 9e-05
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 574 SPLHLAASRGYEEIMTFLIQKGVDINLKGN 603
           + L  AA+RG  E +T L+Q  V++N +  
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNG 32

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.8 bits (96), Expect = 5e-05
 Identities = 11/46 (23%), Positives = 20/46 (43%)

Query: 546 AAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL 591
           A  H     +E LI+ GAD +      ++   ++   G E++   L
Sbjct: 107 ATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 571 DGRSPLHLAASRGYEEIMTFLIQKGVDIN 599
           D    L  AA  G ++ +  L+  G    
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT 29

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 129

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 40.7 bits (94), Expect = 8e-05
 Identities = 20/129 (15%), Positives = 49/129 (37%), Gaps = 7/129 (5%)

Query: 403 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF 462
           + +++       F  GE++  + + ++ +  +  G L+   + ENG    +  + P    
Sbjct: 3   LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQII 62

Query: 463 GEVSILCNIP-QPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQGKESDLRL 521
               I  + P  P  V   E  ++L I K+ F +++          L ++ +        
Sbjct: 63  ASGFIFSSEPRFPVNVVAGENSKILSIPKEVFLDLLMKDRELLLFFLKDVSE------HF 116

Query: 522 KQLQSDITF 530
           + +   + F
Sbjct: 117 RVVSEKLFF 125

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 1e-04
 Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)

Query: 556 EGLIRAGADPN-RTDYDGRSPLHL--AASRGYEEIMTFLIQKGVDI 598
           + L+ +GA     T  D ++          GY +   FL      +
Sbjct: 84  KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM 129

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	608
d1q3ea_	193	HCN pacemaker channel {Mouse (Mus musculus) [TaxId	99.97
d1ne6a2	132	Regulatory subunit of Protein kinase A {Cow (Bos t	99.81
d1cx4a1	136	Regulatory subunit of Protein kinase A {Rat (Rattu	99.8
d1cx4a2	147	Regulatory subunit of Protein kinase A {Rat (Rattu	99.8
d1zyba2	147	Probable transcription regulator BT4300, N-termina	99.79
d1ne6a1	136	Regulatory subunit of Protein kinase A {Cow (Bos t	99.78
d1vp6a_	133	Putative ion channel CnbD {Mesorhizobium loti [Tax	99.77
d1o7fa2	155	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.76
d2gaua2	142	Transcriptional regulator PG0396, N-terminal domai	99.75
d1wgpa_	137	Probable cyclic nucleotide-gated ion channel 6 {Th	99.75
d1o7fa3	124	Regulatory domain of Epac2, domains 1 and 3 {Mouse	99.73
d1i5za2	132	Catabolite gene activator protein, N-terminal doma	99.7
d2oz6a2	134	Cyclic AMP receptor-like protein Vfr {Pseudomonas	99.69
d3e5ua2	139	Chlorophenol reduction protein CprK {Desulfitobact	99.67
d1o5la1	129	CRP-like transcriptional regulator TM1171, N-termi	99.64
d1ft9a2	132	CO-sensing protein CooA, N-terminal domain {Rhodos	99.62
d1r3jc_	103	Potassium channel protein {Streptomyces coelicolor	99.61
d2zcwa2	112	Transcriptional regulator TTHA1359, N-terminal dom	99.56
d1xl4a2	116	Inward rectifier potassium channel kirbac3.1 {Magn	99.49
d1p7ba2	116	Inward rectifier potassium channel Kirbac1.1 {Burk	99.45
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.29
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.15
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1lnqa2	80	Potassium channel-related protein MthK {Archaeon M	99.09
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.08
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	98.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	98.89
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	98.86
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	98.86
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.85
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	98.82
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	98.81
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	98.79
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	98.75
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	98.75
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	98.74
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.73
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	98.71
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.69
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	98.67
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	98.66
d1orsc_	132	Potassium channel KVAP {Archaeon Aeropyrum pernix	98.65
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	98.64
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.62
d2h8pc1	57	Potassium channel protein {Streptomyces coelicolor	98.61
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	98.54
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	98.53
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	98.52
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	98.48
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	98.43
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	98.38
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	98.38
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	98.34
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.33
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	98.28
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	98.2
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	98.09
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	98.02
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	97.94
d2bgca2	131	Listeriolysin regulatory protein PrfA, N-terminal	95.19
d1yhfa1	112	Hypothetical protein SPy1581 {Streptococcus pyogen	86.68

>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.9e-30  Score=236.66  Aligned_cols=187  Identities=22%  Similarity=0.442  Sum_probs=174.0

Q ss_pred             chhHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHhc-cccHHHHHhhCCHHHHHHHHHHHhHhhhcccccccCCCH
Q 007323          322 SKTEKFRDKMTDLMKYINRNRLGRDIRDQIIGHLRLQYES-SYTEASVLQDIPISIRAKISQTLYLPYIEKVPLFKGCSS  400 (608)
Q Consensus       322 ~~~~~~~~~~~~~~~~m~~~~l~~~l~~rv~~y~~~~~~~-~~~~~~~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~  400 (608)
                      +.+++|+++++.+++||+.+++|++|+.||++|+++.|++ ..+++++++.||++|+.++..+.+.++++++|+|+++++
T Consensus         2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~~   81 (193)
T d1q3ea_           2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQGKMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANADP   81 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSCH
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhcccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhhH
Confidence            4578999999999999999999999999999999999975 456888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEe
Q 007323          401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVC  480 (608)
Q Consensus       401 ~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~  480 (608)
                      .++..++..+++..|.||++|+++||+++.+|||.+|.|++..  .++.   ...+++|++||+.+++.+.+++++++|.
T Consensus        82 ~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~--~~~~---~~~l~~G~~fGe~~~~~~~~~~~~~~a~  156 (193)
T d1q3ea_          82 NFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLT--KGNK---EMKLSDGSYFGEICLLTRGRRTASVRAD  156 (193)
T ss_dssp             HHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC---CCC---EEEECTTCEECHHHHHHCSBCSSEEEES
T ss_pred             HHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeec--CCcc---eeeeccceeeeeeeccCCCcccccceec
Confidence            9999999999999999999999999999999999999999875  2332   4578999999999999999999999999


Q ss_pred             ceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          481 ELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       481 ~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      ++|+++.+++++|.++++.+|++...+...+.+
T Consensus       157 ~~~~l~~l~~~~f~~ll~~~p~~~~~~~~~~~~  189 (193)
T d1q3ea_         157 TYCRLYSLSVDNFNEVLEEYPMMRRAFETVAID  189 (193)
T ss_dssp             SCEEEEEEEHHHHHHHHHHSGGGHHHHHHHHHH
T ss_pred             CceEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999999999999999999999888776654

>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.81  E-value=4.8e-20  Score=155.89  Aligned_cols=123  Identities=19%  Similarity=0.273  Sum_probs=114.4

Q ss_pred             hhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceee-eEEeCCCCeecch
Q 007323          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDY-VSYLHPNSSFGEV  465 (608)
Q Consensus       387 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~-~~~l~~G~~fGe~  465 (608)
                      ++|+++|+|++|+++++.+++..++++.|.+|++|+++||+++++|+|.+|.|+++..+.+|++.+ +..+++|++||+.
T Consensus         2 ~~L~~i~~f~~L~~~~~~~l~~~~~~~~~~~g~~I~~~Gd~~~~~yii~~G~v~~~~~~~~~~~~~~~~~~~~g~~fG~~   81 (132)
T d1ne6a2           2 EFLSKVSILESLDKWERLTVADALEPVQFEDGQKIVVQGEPGDEFFIILEGSAAVLQRRSENEEFVEVGRLGPSDYFGEI   81 (132)
T ss_dssp             HHHHTSGGGGGSCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECCEEEEEESSSSCCEEEEEEECTTCEECHH
T ss_pred             hhHhCCHhhhCCCHHHHHHHHHhCEEEEECCCCEEEEcCCcchHHHHHHhhhheeeccCCccccchhhhhccccceeeEe
Confidence            678999999999999999999999999999999999999999999999999999998888887654 7899999999999


Q ss_pred             hhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHH
Q 007323          466 SILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLT  509 (608)
Q Consensus       466 ~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~  509 (608)
                      +++.+.++.++++|.++|+++.+++++|.++++.+|+...+.++
T Consensus        82 ~~~~~~~~~~t~~a~~~~~~~~i~~~~~~~ll~~~p~~~~~~i~  125 (132)
T d1ne6a2          82 ALLMNRPRAATVVARGPLKCVKLDRPRFERVLGPCSDILKRNIQ  125 (132)
T ss_dssp             HHHHTSSCSSEEEESSCEEEEEEEHHHHHHHTGGGHHHHHHGGG
T ss_pred             eecCCCceeEEEEEcccEEEEEEEHHHHHHHHHHCHHHHHHHHH
Confidence            99999999999999999999999999999999999987555433

>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3.2e-19  Score=151.51  Aligned_cols=123  Identities=23%  Similarity=0.368  Sum_probs=114.3

Q ss_pred             HhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeec
Q 007323          384 LYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFG  463 (608)
Q Consensus       384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fG  463 (608)
                      ...+.|+++|+|++++++++..++..++.+.|.+|++|+++||+++.+|+|.+|.|+++. ..+|.+..+..+++|++||
T Consensus        13 ~l~~~l~~~~~F~~l~~~~~~~l~~~~~~~~~~~g~~I~~~G~~~~~~y~I~~G~v~v~~-~~~~~~~~~~~l~~g~~fg   91 (136)
T d1cx4a1          13 RLQEACKDILLFKNLDPEQMSQVLDAMFEKLVKEGEHVIDQGDDGDNFYVIDRGTFDIYV-KCDGVGRCVGNYDNRGSFG   91 (136)
T ss_dssp             HHHHHHTTCGGGTTCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEECEEEEEE-EETTEEEEEEEEESSCEEC
T ss_pred             HHHHHHhCCHhhhcCCHHHHHHHhcceEEEEECCCCEEEECCCcchhhhhhhhheeEEee-ccccceeeeeccCCccccc
Confidence            335789999999999999999999999999999999999999999999999999999976 4567777888999999999


Q ss_pred             chhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHH
Q 007323          464 EVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (608)
Q Consensus       464 e~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~i  507 (608)
                      +.+++.+.|+.++++|.++|.++.|++++|.+++++++...+++
T Consensus        92 ~~~l~~~~~~~~s~~a~~~~~~~~i~~~~f~~ll~~~~~~~r~~  135 (136)
T d1cx4a1          92 ELALMYNTPRAATITATSPGALWGLDRVTFRRIIVKNNAKKRKM  135 (136)
T ss_dssp             HHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHhCCCcceEEEEECCCEEEEEEeHHHHHHHHHhCHHHHHhc
Confidence            99999999999999999999999999999999999998877654

>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=3.9e-19  Score=153.38  Aligned_cols=127  Identities=17%  Similarity=0.289  Sum_probs=115.4

Q ss_pred             hhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEecc------CCceeeeEEeCCCC
Q 007323          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE------NGTEDYVSYLHPNS  460 (608)
Q Consensus       387 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~------~g~~~~~~~l~~G~  460 (608)
                      .+|+++|+|++++++++.+++..++.+.|.||++|+++||.++.+|+|.+|.|+++..+.      +++...+..+++|+
T Consensus         2 ~~l~~~p~f~~l~~~~l~~l~~~~~~~~~~~ge~i~~~G~~~~~~y~i~~G~v~v~~~~~~~~~~~~~~~~~i~~~~~g~   81 (147)
T d1cx4a2           2 SFIESLPFLKSLEVSERLKVVDVIGTKVYNDGEQIIAQGDSADSFFIVESGEVRITMKRKGKSDIEENGAVEIARCLRGQ   81 (147)
T ss_dssp             HHHHTCGGGTTSCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEEEEEEEEEEC--------CCEEEEEEECTTC
T ss_pred             hhHhcCHhhcCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCceeEEEecceEEEEEecCCCccccccceeeeeeccCCc
Confidence            578999999999999999999999999999999999999999999999999999987543      34556788999999


Q ss_pred             eecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          461 SFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       461 ~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +|||.+++.+.|+.++++|.++|+++.+++++|.+++.++|+...+.++.+.+
T Consensus        82 ~fGe~~~~~~~~~~~t~~a~~~~~~~~i~~~~f~~ll~~~~~i~~~~~~~~~~  134 (147)
T d1cx4a2          82 YFGELALVTNKPRAASAHAIGTVKCLAMDVQAFERLLGPCMEIMKRNIATYEE  134 (147)
T ss_dssp             EESCHHHHHTCCCSSEEEEEEEEEEEEEEHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             EeeehhhcCCCCceEEEEECCCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999887777666644

>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable transcription regulator BT4300, N-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.79  E-value=4.2e-19  Score=153.17  Aligned_cols=130  Identities=15%  Similarity=0.128  Sum_probs=120.7

Q ss_pred             HhHhhhcccccccCCCHHHHHHHHHHce--eeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe
Q 007323          384 LYLPYIEKVPLFKGCSSEFINQIVIRLH--EEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS  461 (608)
Q Consensus       384 ~~~~~l~~~~~f~~l~~~~l~~l~~~~~--~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~  461 (608)
                      ...+.|.++|+|++++++++.+++..++  .+.|.+|++|+++||+.+++|+|.+|.|+++..+.+|++.++..+.+|++
T Consensus         3 ~~~d~L~~~~lF~~l~~~~~~~ll~~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~v~~~~~~g~~~~~~~~~~g~~   82 (147)
T d1zyba2           3 TMFDTLLQLPLFQGLCHEDFTSILDKVKLHFIKHKAGETIIKSGNPCTQLCFLLKGEISIVTNAKENIYTVIEQIEAPYL   82 (147)
T ss_dssp             HHHTTGGGSGGGTTCCHHHHHHHHHTSCCEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECGGGSCEEEEEEESSEE
T ss_pred             hHHHHHhCCcccccCCHHHHHHHHhhCceEEEEECCCCEEEeccCCccEEEEEecceEEEEEEcCCCCEEEEEEcCCCCE
Confidence            3467899999999999999999998764  67899999999999999999999999999999999999999999999999


Q ss_pred             ecchhhhcCCCc-ccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          462 FGEVSILCNIPQ-PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       462 fGe~~~~~~~~~-~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      ||+.+++.+.++ ++++.|.++|+++.+|++.|.++++++|.+...+++.+..
T Consensus        83 fGe~~~~~~~~~~~~~v~a~~~~~vl~i~~~~~~~~~~~~p~~~~~~~~~ls~  135 (147)
T d1zyba2          83 IEPQSLFGMNTNYASSYVAHTEVHTVCISKAFVLSDLFRYDIFRLNYMNIVSN  135 (147)
T ss_dssp             ECGGGGSSSCCBCSSEEEESSCEEEEEEEHHHHHHTGGGSHHHHHHHHHHHHH
T ss_pred             eccchhhcccccccceeeecceeeeeehhHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            999999987775 7899999999999999999999999999999999888766

>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory subunit of Protein kinase A
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=6e-19  Score=149.30  Aligned_cols=120  Identities=23%  Similarity=0.350  Sum_probs=109.2

Q ss_pred             HHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCee
Q 007323          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSF  462 (608)
Q Consensus       383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~f  462 (608)
                      ....+.+++.++|++++++++.+++..++.+.|++|++|+++||+++.+|+|.+|.+++...   +  ..+..+++|++|
T Consensus        16 ~~l~~~l~~~~lF~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~yiI~~G~v~v~~~---~--~~~~~l~~G~~f   90 (136)
T d1ne6a1          16 AALAKAIEKNVLFSHLDDNERSDIFDAMFPVSFIAGETVIQQGDEGDNFYVIDQGEMDVYVN---N--EWATSVGEGGSF   90 (136)
T ss_dssp             HHHHHHHHHCGGGTSCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEEEET---T--EEEEEECTTCEE
T ss_pred             HHHHHHHhCCHhhhhCCHHHHHHHhcceEEEEECCCCEEEeCCCCcceeeeecCCceeeecc---c--cccceecccccc
Confidence            44467899999999999999999999999999999999999999999999999999998862   2  246789999999


Q ss_pred             cchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHH
Q 007323          463 GEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKV  507 (608)
Q Consensus       463 Ge~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~i  507 (608)
                      ||.+++.+.|+.++++|.++|.++.+++++|.++++++|...+++
T Consensus        91 Ge~~ll~~~~~~~tv~a~~~~~l~~i~~~~f~~ll~~~~~~~r~~  135 (136)
T d1ne6a1          91 GELALIYGTPRAATVKAKTNVKLWGIDRDSYRRILMGSTLRKRKM  135 (136)
T ss_dssp             CCHHHHHCCCCCSEEEESSCEEEEEEEHHHHHHHTHHHHHHHHHH
T ss_pred             ccHHHcCCCcceEEEEEccCEEEEEEEHHHHHHHHhhCHHHHHhh
Confidence            999999999999999999999999999999999999988665443

>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Putative ion channel CnbD
species: Mesorhizobium loti [TaxId: 381]

Probab=99.77  E-value=9.1e-19  Score=147.98  Aligned_cols=123  Identities=23%  Similarity=0.323  Sum_probs=113.9

Q ss_pred             hHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecc
Q 007323          385 YLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGE  464 (608)
Q Consensus       385 ~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe  464 (608)
                      ..++|+++|+|+.++++++..++..++.+.|+||++|+++|++++.+|+|.+|.|+++.  .++     ..+.+|++||+
T Consensus         9 ~~~~l~~~p~F~~l~~~~l~~l~~~~~~~~~~~g~~i~~~G~~~~~~y~I~~G~v~v~~--~~~-----~~l~~G~~~G~   81 (133)
T d1vp6a_           9 NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICRIGEPGDRMFFVVEGSVSVAT--PNP-----VELGPGAFFGE   81 (133)
T ss_dssp             HHHHHTTCGGGGGCCHHHHHHHHHHCEEEEECTTCEEECTTSCCCEEEEEEESCEEECS--SSC-----EEECTTCEECH
T ss_pred             HHHHHHCCCccccCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCccceeeeccccEEEE--eee-----eeeccCccccc
Confidence            34889999999999999999999999999999999999999999999999999999875  233     35899999999


Q ss_pred             hhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          465 VSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       465 ~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                      .+++.+.|+.++++|.++|+++.+++++|.+++.++|.+...+++.+.++
T Consensus        82 ~~~l~~~~~~~~~~a~~~~~i~~i~~~~~~~l~~~~p~~~~~~~~~~~~R  131 (133)
T d1vp6a_          82 MALISGEPRSATVSAATTVSLLSLHSADFQMLCSSSPEIAEIFRKTALER  131 (133)
T ss_dssp             HHHHHCCCCSSCEEESSSEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccccCCCcccceEEECCCEEEEEEeHHHHHHHHHhCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988887664

>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.7e-18  Score=150.48  Aligned_cols=137  Identities=23%  Similarity=0.306  Sum_probs=119.9

Q ss_pred             HHhhCCHHHHHHHHHHHhHhhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEecc-
Q 007323          368 VLQDIPISIRAKISQTLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEE-  446 (608)
Q Consensus       368 ~l~~lp~~Lr~~i~~~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~-  446 (608)
                      .|+.-|. -|.+...+...+.++++++|+.++++.+.+++..++.+.|++|++|+++||.++.+|+|.+|.|.++..+. 
T Consensus         6 ~L~k~p~-~Rt~~~~~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~gd~~~~~y~I~~G~v~v~~~~~~   84 (155)
T d1o7fa2           6 CLDKRPL-ERSSEDVDIIFTRLKGVKAFEKFHPNLLRQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLDVKVSETS   84 (155)
T ss_dssp             HHTSCST-TCCHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHCEEEEECTTCEEECTTSBCCEEEEEEESCEEEEECSSS
T ss_pred             HhcCChh-hCCHHHHHHHHHHHhCCHhHhcCCHHHHHHHHHhcEEEEECCCCEEEeCCCcceeeEEEeccchheeeeccc
Confidence            3444333 36666667778899999999999999999999999999999999999999999999999999999876443 


Q ss_pred             -CCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHH
Q 007323          447 -NGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRK  506 (608)
Q Consensus       447 -~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~  506 (608)
                       +|+...+..+++|++||+ +++.+.|+.++++|.++|+++.+++++|.++++++|++...
T Consensus        85 ~~~~~~~v~~l~~g~~fGe-~~l~~~~~~~tv~a~~~~~l~~i~~~~f~~il~~~~~~~~~  144 (155)
T d1o7fa2          85 SHQDAVTICTLGIGTAFGE-SILDNTPRHATIVTRESSELLRIEQEDFKALWEKYRQYMAG  144 (155)
T ss_dssp             CGGGCEEEEEECTTCEECG-GGGGTCBCSSEEEESSSEEEEEEEHHHHHHHHHHHGGGTTT
T ss_pred             ccccccccccccccccchh-hhhcCCCceEEEEECCCEEEEEEeHHHHHHHHHHCHHHHHH
Confidence             456667889999999998 78899999999999999999999999999999999986543

>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Transcriptional regulator PG0396, N-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=99.75  E-value=3.6e-18  Score=146.24  Aligned_cols=120  Identities=13%  Similarity=0.159  Sum_probs=111.5

Q ss_pred             cccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc
Q 007323          394 LFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ  473 (608)
Q Consensus       394 ~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~  473 (608)
                      +|+.+++++++.+...++++.|++|++|+.+|++.+.+|+|.+|.++++..+++|++.++..+++|++||+.+++.+.|+
T Consensus         8 lf~~l~~~~~~~l~~~~~~~~~~~g~~l~~~g~~~~~ly~v~~G~v~~~~~~~~g~~~~~~~~~~G~~~G~~~~~~~~~~   87 (142)
T d2gaua2           8 VWSLLNEEERELLDKEIQPFPCKKASTVFSEGDIPNNLFYLYEGKIKILREGVYGRFHISRIVKPGQFFGMRPYFAEETC   87 (142)
T ss_dssp             HHTTCCHHHHHHHHHHCEEEEECTTCEEECTTCCCCEEEEEEESCEEEEC-----CCCEEEEECTTCEESHHHHHHTSCC
T ss_pred             HHccCCHHHHHHHHhcCEEEEECCCCEEEeCCCccceEEEEEecceeeEeeccccceeeeecccccchhhhhhhhccCCc
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          474 PYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       474 ~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      .++++|.++|.++.+|.++|.+++.++|.+...++..+.+
T Consensus        88 ~~~~~a~~~s~v~~i~~~~~~~l~~~~~~~~~~~~~~l~~  127 (142)
T d2gaua2          88 SSTAIAVENSKVLAIPVEAIEALLKGNTSFCRYFLKALAK  127 (142)
T ss_dssp             SSEEEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             eeEEEecCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888866

>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Probable cyclic nucleotide-gated ion channel 6
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=2.2e-18  Score=145.94  Aligned_cols=117  Identities=17%  Similarity=0.267  Sum_probs=102.9

Q ss_pred             hhhcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCc-eeeeEEeCCCCeecch
Q 007323          387 PYIEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGT-EDYVSYLHPNSSFGEV  465 (608)
Q Consensus       387 ~~l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~-~~~~~~l~~G~~fGe~  465 (608)
                      ..|+++|+|++++++.+.+|+..++++.|.||++|+++||+++.+|||.+|.|+++..+.++. ......+++|++|||.
T Consensus         6 s~l~~vp~F~~l~~~~l~~l~~~~~~~~~~~ge~I~~~Gd~~~~ly~i~~G~v~~~~~~~~~~~~~~~~~l~~G~~fGE~   85 (137)
T d1wgpa_           6 SGVRRVPLFENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNRSLLKEGDFCGDE   85 (137)
T ss_dssp             CSCSSCSGGGSCCHHHHHHHHHHCBCCCBCTTEEEECTTSBCSEEEEEEECCCEEECCSSCSSSSSCEEECCTTCBSSTH
T ss_pred             HHHHCCHhHhCCCHHHHHHHHHhcEEEEECCCCEEEecccccceeehhccCceEEEEecCCCceeeeeeeccCCcEEcch
Confidence            468999999999999999999999999999999999999999999999999999887544433 3346788999999999


Q ss_pred             hhhc---------CCCcccEEEEeceeeeEEechhhHHHHHHHhhhc
Q 007323          466 SILC---------NIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCD  503 (608)
Q Consensus       466 ~~~~---------~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~  503 (608)
                      +++.         ..+++++++|+++|+++.|++++|.++++++++.
T Consensus        86 ~ll~~~~~~~~~~~~~r~~tv~a~t~~~l~~L~~~dl~~il~~~~r~  132 (137)
T d1wgpa_          86 LLTWALDPKSGSNLPSSTRTVKALTEVEAFALIADELKFVASQFRRS  132 (137)
T ss_dssp             HHHHHHCSSCCSSSCBCSSEEEESSCBEEEEEEHHHHHHHHHHHCCC
T ss_pred             hHhccCCCcccccccccCcEEEEeeeEEEEEEEHHHHHHHHHHhccc
Confidence            8863         2246689999999999999999999999988754

>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Regulatory domain of Epac2, domains 1 and 3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=3e-17  Score=136.65  Aligned_cols=116  Identities=21%  Similarity=0.346  Sum_probs=103.9

Q ss_pred             HHhHhhhcccccccCCCHHHHHHHHHHceeeee-cCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCe
Q 007323          383 TLYLPYIEKVPLFKGCSSEFINQIVIRLHEEFF-LPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSS  461 (608)
Q Consensus       383 ~~~~~~l~~~~~f~~l~~~~l~~l~~~~~~~~~-~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~  461 (608)
                      +...+.|+++|+|++++++.+++|+..+..+.+ ++|++|+++||+.+.+|+|.+|.|++...   + +.....+++|++
T Consensus         6 ~~i~~~L~~~~~F~~l~~~~l~~l~~~~~~~~~~~~ge~I~~~gd~~~~lyii~~G~v~~~~~---~-~~~~~~~~~G~~   81 (124)
T d1o7fa3           6 EIIYDELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSWYIILKGSVNVVIY---G-KGVVCTLHEGDD   81 (124)
T ss_dssp             HHHHHHHTTCGGGTTSCHHHHHHHHHHCEEEEECSTTCEEECTTSCCCEEEEEEESEEEEEET---T-TEEEEEEETTCE
T ss_pred             HHHHHHHhCCHhhhcCCHHHHHHHHhhCeEEEEcCCCCEEEECCCcCceEEEEEcceEEEEEe---e-eeecccccCCcc
Confidence            345688999999999999999999999987654 67999999999999999999999998762   2 235678899999


Q ss_pred             ecchhhhcCCCcccEEEEece-eeeEEechhhHHHHHHHhhh
Q 007323          462 FGEVSILCNIPQPYTVQVCEL-CRLLRIDKQSFTNIIDIYFC  502 (608)
Q Consensus       462 fGe~~~~~~~~~~~~~~a~~~-~~l~~l~~~~~~~ll~~~~~  502 (608)
                      ||+.+++.+.|+.++++|.++ |+++.+++++|.++++++|+
T Consensus        82 fGe~~ll~~~~r~~t~~a~~~~~~l~~i~~~~f~~il~~~~~  123 (124)
T d1o7fa3          82 FGKLALVNDAPRAASIVLREDNCHFLRVDKEDFNRILRDVEA  123 (124)
T ss_dssp             ECGGGGTCCSCCSSEEEESSSSEEEEEEEHHHHHHHHHHTTC
T ss_pred             hhhhHhhCCCceeeEEEEEeCcEEEEEEcHHHHHHHHhhccC
Confidence            999999999999999999986 89999999999999999885

>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Catabolite gene activator protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.70  E-value=8.6e-17  Score=135.74  Aligned_cols=115  Identities=16%  Similarity=0.297  Sum_probs=108.5

Q ss_pred             CHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcC-CCcccEE
Q 007323          399 SSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCN-IPQPYTV  477 (608)
Q Consensus       399 ~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~-~~~~~~~  477 (608)
                      +++.++.+...++.+.|++|++|+++||+.+.+|+|.+|.++++..+.+|++.++..+.+|++||+.+++.+ .++.+++
T Consensus         2 sd~~le~l~~~~~~~~~~~g~~i~~~g~~~~~iy~i~~G~v~~~~~~~~g~e~~l~~~~~G~~~G~~~~~~~~~~~~~~~   81 (132)
T d1i5za2           2 TDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEGQERSAWV   81 (132)
T ss_dssp             CCHHHHHHHTTSEEEEECTTCEEECTTSBCCEEEEEEECCEEEEEECTTCCEEEEEEECTTCEESCTTTTSSSCBCCSEE
T ss_pred             CHHHHHHHHHhCEEEEECcCCEEEcCCCCCCEEEEEEEccceeeeccccchhhhhhhhCcccccchHHHhcCCccceEEE
Confidence            578899999999999999999999999999999999999999999999999999999999999999998864 6789999


Q ss_pred             EEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          478 QVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       478 ~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +|.++|+++.+|.++|.++++++|.+...+++.+.+
T Consensus        82 ~a~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~l~~  117 (132)
T d1i5za2          82 RAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMAR  117 (132)
T ss_dssp             EESSCEEEEEEEHHHHHHHHHHCTHHHHHHHHHHHH
T ss_pred             EEccceEEEEEcHHHHHHHHhhCHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888766

>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Cyclic AMP receptor-like protein Vfr
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.69  E-value=1.5e-16  Score=134.40  Aligned_cols=113  Identities=15%  Similarity=0.282  Sum_probs=105.2

Q ss_pred             HHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcC----CCcccE
Q 007323          401 EFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCN----IPQPYT  476 (608)
Q Consensus       401 ~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~----~~~~~~  476 (608)
                      +.++.+...++.+.|++|++|+++||+.+.+|+|++|.|+++..+.+|++.++..+.||++||+.+++.+    .|++++
T Consensus         3 ~~le~l~~~~~~~~~~~g~~i~~~g~~~~~~y~i~~G~v~v~~~~~~g~~~~~~~~~~g~~~G~~~~~~~~~~~~~~~~~   82 (134)
T d2oz6a2           3 KHLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIIKGSVTILIEDDDGREMIIGYLNSGDFFGELGLFEKEGSEQERSAW   82 (134)
T ss_dssp             HHHHHHHHSSEEEEECTTCEEECTTSBCCEEEEEEESEEEEEEECTTSCEEEEEEEETTCEESCTTTCC-----CBCCSE
T ss_pred             HHHHHHHHhCEEEEECCCCEEEeCCCcCCEEEEEEEcccceeeeecccccceeeeccCCCccchHHHhcCccccccceeE
Confidence            5678899999999999999999999999999999999999999999999999999999999999998864    467889


Q ss_pred             EEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          477 VQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       477 ~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      ++|.++|+++.+|++.|.++++.+|++...+++.+..
T Consensus        83 ~~a~~~~~vl~i~~~~~~~~~~~~~~~~~~~~~~~~~  119 (134)
T d2oz6a2          83 VRAKVECEVAEISYAKFRELSQQDSEILYTLGSQMAD  119 (134)
T ss_dssp             EEESSCEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             EEECCCEEEEEEeHHHHHHHHHHCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888766

>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=99.67  E-value=1.5e-16  Score=135.27  Aligned_cols=123  Identities=16%  Similarity=0.111  Sum_probs=113.6

Q ss_pred             hcccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhh
Q 007323          389 IEKVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSIL  468 (608)
Q Consensus       389 l~~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~  468 (608)
                      ...+.++..++.+.+++++..++.+.|++|++|+++||+.+++|+|++|.++++..+.+|++.++..+++|++||+..  
T Consensus         3 ~~~~~p~~~~p~e~l~~l~~~~~~~~y~kg~~i~~~g~~~~~~y~v~~G~v~~~~~~~~g~~~~l~~~~~g~~~g~~~--   80 (139)
T d3e5ua2           3 CGAIIPDNFFPIEKLRNYTQMGLIRDFAKGSAVIMPGEEITSMIFLVEGKIKLDIIFEDGSEKLLYYAGGNSLIGKLY--   80 (139)
T ss_dssp             CCCSSSBSCSCCGGGGGGGGGSEEEEECTTCEEECTTCCCCSEEEEEESEEEEEEECTTSCEEEEEEEETTCEECCCS--
T ss_pred             hhhcCCCCCCCHHHHHHHHHhCEEEEECCCCEEEeCCCCCCEEEEEEeccceEEEeeccccccceeeccccceeehhh--
Confidence            445566788888999999999999999999999999999999999999999999999999999999999999999864  


Q ss_pred             cCCCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhcc
Q 007323          469 CNIPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQG  514 (608)
Q Consensus       469 ~~~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~~  514 (608)
                       ..++..++.|.++|+++.++++.|.++++++|++...+++.+.++
T Consensus        81 -~~~~~~~~~a~~~~~v~~i~~~~f~~l~~~~p~l~~~il~~~~~r  125 (139)
T d3e5ua2          81 -PTGNNIYATAMEPTRTCWFSEKSLRTVFRTDEDMIFEIFKNYLTK  125 (139)
T ss_dssp             -CCSCEEEEEESSCEEEEEECHHHHHHHHHHCTHHHHHHHHHHHHH
T ss_pred             -hhcccccccccccceEEEeeHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence             457788999999999999999999999999999999999988773

>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: CRP-like transcriptional regulator TM1171, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.64  E-value=3.9e-16  Score=131.03  Aligned_cols=111  Identities=17%  Similarity=0.239  Sum_probs=104.0

Q ss_pred             HHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc-ccEEEEec
Q 007323          403 INQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ-PYTVQVCE  481 (608)
Q Consensus       403 l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~-~~~~~a~~  481 (608)
                      +++++...+.+.|++|++|+++||+.+++|+|.+|.++++..+.+|++..+..+++|++||+.+++.+.++ .++++|.+
T Consensus         3 l~~l~~~~~~~~~~kg~~l~~~g~~~~~~y~i~~G~v~~~~~~~~g~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~a~~   82 (129)
T d1o5la1           3 LKKLLPCGKVIVFRKGEIVKHQDDPIEDVLILLEGTLKTEHVSENGKTLEIDEIKPVQIIASGFIFSSEPRFPVNVVAGE   82 (129)
T ss_dssp             GGGGGGGSEEEEECTTCEEECTTCBCCEEEEEEESCEEEEEECTTSCEEEEEEECSSEESSGGGTTSSSCBCSSEEEESS
T ss_pred             HHHHHhCCEEEEECCCCEEEECCCcCcEEEEEeccccEEEEeecccccchhhhcccccccchHHHhccCCCccEEEEeec
Confidence            45678889999999999999999999999999999999999999999999999999999999999988775 68999999


Q ss_pred             eeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          482 LCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       482 ~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                      +|+++.+|++.|.++++++|.+...+++.+..
T Consensus        83 ~~~vl~i~~~~~~~~~~~~~~~~~~~~~~l~~  114 (129)
T d1o5la1          83 NSKILSIPKEVFLDLLMKDRELLLFFLKDVSE  114 (129)
T ss_dssp             SEEEEEEEHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             ccEEEEEcHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            99999999999999999999999999888765

>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: CO-sensing protein CooA, N-terminal domain
domain: CO-sensing protein CooA, N-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=99.62  E-value=3.5e-16  Score=131.48  Aligned_cols=115  Identities=12%  Similarity=0.081  Sum_probs=107.1

Q ss_pred             ccccccCCCHHHHHHHHHHceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcC
Q 007323          391 KVPLFKGCSSEFINQIVIRLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCN  470 (608)
Q Consensus       391 ~~~~f~~l~~~~l~~l~~~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~  470 (608)
                      +.++|+.|++++++.+...++.+.|++|++|+++|+.++++|+|.+|.++++..+ +|++.++..+++|++||+.     
T Consensus         3 r~~~~~~L~~~~~~~~~~~~~~~~~~kG~~i~~~g~~~~~ly~v~~G~v~~~~~~-~g~e~~l~~~~~g~~f~~~-----   76 (132)
T d1ft9a2           3 RFNIANVLLSPDGETFFRGFRSKIHAKGSLVCTGEGDENGVFVVVDGRLRVYLVG-EEREISLFYLTSGDMFCMH-----   76 (132)
T ss_dssp             CCCTHHHHTSTTTTTTTTTCEEEEECTTCEEECTTCCCCCEEEEEESEEEEEEEE-TTEEEEEEEEETTCEEESC-----
T ss_pred             CcChhHhCCHHHHHHHHHhCEEEEecCCcEEECCCCCCCEEEEEEeCeEeeeccc-cccceeecccccccccccc-----
Confidence            5788999999999999999999999999999999999999999999999998765 6888899999999999874     


Q ss_pred             CCcccEEEEeceeeeEEechhhHHHHHHHhhhcHHHHHHHHhc
Q 007323          471 IPQPYTVQVCELCRLLRIDKQSFTNIIDIYFCDGRKVLTNLLQ  513 (608)
Q Consensus       471 ~~~~~~~~a~~~~~l~~l~~~~~~~ll~~~~~~~~~il~~l~~  513 (608)
                        +.++++|+++|+++.++++.|.++++++|.+...+++.+..
T Consensus        77 --~~~~v~A~~~s~v~~i~~~~~~~ll~~~p~~~~~l~~~l~~  117 (132)
T d1ft9a2          77 --SGCLVEATERTEVRFADIRTFEQKLQTCPSMAWGLIAILGR  117 (132)
T ss_dssp             --SSCEEEESSCEEEEEECHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             --ccccceeccceeeeeehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              46799999999999999999999999999999999988876

>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=99.61  E-value=2.8e-15  Score=118.57  Aligned_cols=56  Identities=25%  Similarity=0.350  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIVK  320 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~~  320 (608)
                      .|.+|+||+++|+|||||||+.|.|..+|+++++++++|+.+++++++.+++.+.+
T Consensus        40 s~~~aly~~~vT~tTvGYGDi~P~t~~gr~~~~~~~~~Gi~~~~~~~~~i~~~~~~   95 (103)
T d1r3jc_          40 TYPRALWWSVETATTVGYGDLYPVTLWGRCVAVVVMVAGITSFGLVTAALATWFVG   95 (103)
T ss_dssp             SHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhhhheeeecccccCccccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47799999999999999999999999999999999999999999999999987754

>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel kirbac3.1
species: Magnetospirillum magnetotacticum [TaxId: 188]

Probab=99.49  E-value=5.5e-14  Score=114.08  Aligned_cols=55  Identities=22%  Similarity=0.282  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~  319 (608)
                      +|.+|+||+++||||+||||+.|.+..+++++++.+++|++++++++|.+.+.++
T Consensus        60 ~~~~a~yfs~~T~tTvGYGDi~P~t~~~r~~~~~~~~~G~~~~a~~~g~i~~~fs  114 (116)
T d1xl4a2          60 SFTDAFFFSVQTMATIGYGKLIPIGPLANTLVTLEALCGMLGLAVAASLIYARFT  114 (116)
T ss_dssp             CHHHHHHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHccCCCCccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999887664

>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Inward rectifier potassium channel Kirbac1.1
species: Burkholderia pseudomallei [TaxId: 28450]

Probab=99.45  E-value=5.8e-14  Score=113.84  Aligned_cols=55  Identities=25%  Similarity=0.351  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          265 SYITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTALIV  319 (608)
Q Consensus       265 ~Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~~~~  319 (608)
                      .|.+|+||+++|+||+||||++|.+..+++++++.+++|++++|+++|.+.+.++
T Consensus        61 ~~~~a~yfs~~T~tTvGYGDi~P~t~~~~~~~~~~~~~g~~~~a~~~g~i~~~~s  115 (116)
T d1p7ba2          61 GFVGAFFFSVETLATVGYGDMHPQTVYAHAIATLEIFVGMSGIALSTGLVFARFA  115 (116)
T ss_dssp             STHHHHHHHTTTTTTCCCSCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3679999999999999999999999999999999999999999999999887654

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=1e-12  Score=107.49  Aligned_cols=78  Identities=28%  Similarity=0.294  Sum_probs=73.0

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .++..+..+.+|+|.|+..+..+.++.++..|++++..|..|+||||.|+..|+.+++++|+++|||++.+|.+|+|+
T Consensus        27 d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~Gad~~~~d~~G~t~  104 (118)
T d1myoa_          27 DVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTA  104 (118)
T ss_dssp             CCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTCCCSSSSSSSTCCC
T ss_pred             ccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhhcccccceeeCCCCCCH
Confidence            345566678899999999999999999999999999999999999999999999999999999999999999999996

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=2.6e-11  Score=103.71  Aligned_cols=74  Identities=14%  Similarity=0.158  Sum_probs=67.0

Q ss_pred             hhhhhhhhHhHHHhc---CCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYH---GDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~---~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+..+.+++|+|+..   +..+.++.|+++|++++.+|..|+||||.|+..|+.+++++|+++|+|++.+|.+|+|+
T Consensus        41 ~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp  117 (154)
T d1dcqa1          41 GHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETP  117 (154)
T ss_dssp             CSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCccccccCCCCCCH
Confidence            345567899999864   57889999999999999999999999999999999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=3.9e-11  Score=99.77  Aligned_cols=77  Identities=25%  Similarity=0.307  Sum_probs=70.1

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC-CCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN-SIMQ  607 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~-~g~T  607 (608)
                      +++..+..+.+|+|+|+..++.+.++.+++.|++++..|.+|+||||+|+..|+.+++++|+++||+++..+. .|.|
T Consensus        26 d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~  103 (130)
T d1ycsb1          26 DPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQT  103 (130)
T ss_dssp             SCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCC
T ss_pred             CccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHHcCCCcccccCCCCCC
Confidence            3455667788999999999999999999999999999999999999999999999999999999999998875 4655

>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=99.09  E-value=2e-12  Score=96.40  Aligned_cols=51  Identities=25%  Similarity=0.384  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHhhccccCCcccCChhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          266 YITSMYASVVTMTTVGYGDVHAVNLREMVFIMIYVSFDMILGAYLIGNMTA  316 (608)
Q Consensus       266 Y~~s~y~~~~t~ttvGygdi~p~~~~e~~~~~~~~~~g~~~~a~~i~~i~~  316 (608)
                      |.+|+||+++|+||+||||+.|.|..+|+++++++++|+.++++.++.+++
T Consensus        28 ~~dalyf~~~T~tTiGyGD~~P~t~~~r~~~~~~~l~g~~~~~~~i~~i~~   78 (80)
T d1lnqa2          28 WTVSLYWTFVTIATVGYGDYSPSTPLGMYFTVTLIVLGIGTFAVAVERLLE   78 (80)
T ss_dssp             SSTTHHHHHHHHTTCCCSSCCCCCSSHHHHHTHHHHTTSTTTTTHHHHHTT
T ss_pred             HHHHHHHHhhheeeccCCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            348999999999999999999999999999999999999999999988764

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.08  E-value=5e-11  Score=97.21  Aligned_cols=69  Identities=38%  Similarity=0.497  Sum_probs=66.6

Q ss_pred             hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+|+.+|+..|+.+.++.|+++|++++..|..|+||||.|+..|+.+++++|+++|+|+|.+|..|+|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tp   71 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITP   71 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceeeecccccccc
Confidence            468999999999999999999999999999999999999999999999999999999999999999985

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=9.6e-11  Score=97.30  Aligned_cols=68  Identities=25%  Similarity=0.372  Sum_probs=65.1

Q ss_pred             hhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       541 ~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..++.|+..|+.+.++.|+++|+++|..|..|+||||.|+..|+.+++++|+++|+++|.+|.+|+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tp   70 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTP   70 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccccccccCccc
Confidence            35788999999999999999999999999999999999999999999999999999999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.94  E-value=5.7e-10  Score=106.76  Aligned_cols=75  Identities=32%  Similarity=0.350  Sum_probs=70.4

Q ss_pred             chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+....++++.++..+..+.++.|+..|++++..+..|+||||+|+..|+.++|++|+++|||+|.+|..|+|+
T Consensus       194 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~Ta  268 (291)
T d1s70b_         194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA  268 (291)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             cccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            344566789999999999999999999999999999999999999999999999999999999999999999996

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=7e-10  Score=111.63  Aligned_cols=68  Identities=28%  Similarity=0.482  Sum_probs=65.8

Q ss_pred             hhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       541 ~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ||||.||..|+.+.++.|+++|+++|..|..|+||||.|+..|+.+++++|+++||++|.+|.+|+|+
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~   69 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTP   69 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCH
Confidence            79999999999999999999999999999999999999999999999999999999999999999884

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=6.7e-10  Score=91.38  Aligned_cols=76  Identities=20%  Similarity=0.211  Sum_probs=66.4

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCc-hHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGR-SPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~-tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+++|.+ ..++.+.+++|+++|++++..+..|. ||||.|+..|+.+++++|+++|+|++.+|.+|+|+
T Consensus        29 ~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~  105 (125)
T d1bi7b_          29 PNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLP  105 (125)
T ss_dssp             TTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCH
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCH
Confidence            344555667788865 46899999999999999999988765 69999999999999999999999999999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.86  E-value=3e-10  Score=107.78  Aligned_cols=71  Identities=27%  Similarity=0.316  Sum_probs=65.2

Q ss_pred             hhhhhHhHHHhcCCHHHHHHH--------HHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          538 ELALKVNSAAYHGDLYQLEGL--------IRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~~~~~L--------l~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+.+|||+|+..|+.+.++.|        +.+|+++|.+|.+|+||||+|+..|+.+++++|+++|||++.+|.+|.|+
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            467999999999988877665        57799999999999999999999999999999999999999999999884

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.5e-09  Score=103.25  Aligned_cols=72  Identities=19%  Similarity=0.217  Sum_probs=65.7

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHH-cCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIR-AGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN  603 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~-~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  603 (608)
                      ++..+..+.+|+|.++..++.+.++.++. .|++++..|.+|.||||+|+..|+.+++++|+++|||+|++|.
T Consensus       212 ~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             SSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            34455667889999999999999999997 5899999999999999999999999999999999999999884

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=2.6e-09  Score=97.76  Aligned_cols=76  Identities=25%  Similarity=0.319  Sum_probs=70.6

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +..+....+++|.++..+..+..+.+...|.+++..|..|+||||.|+..|+.+++++|+++|||++.+|.+|+|+
T Consensus       130 ~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tp  205 (223)
T d1uoha_         130 DAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTP  205 (223)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             CCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            3445566788999999999999999999999999999999999999999999999999999999999999999985

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.81  E-value=1.4e-09  Score=101.71  Aligned_cols=73  Identities=19%  Similarity=0.128  Sum_probs=66.4

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCC---CCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGAD---PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~---~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +.++.+|+|.|+..++.+.++.|++.|++   ++..|..|.||||+|+..|+.+++++|+++||+++.+|.+|.|+
T Consensus         6 ~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           6 TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            45678999999999999999999999987   55677889999999999999999999999999999999999884

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=3.2e-09  Score=90.95  Aligned_cols=66  Identities=30%  Similarity=0.395  Sum_probs=58.1

Q ss_pred             hhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          541 LKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       541 ~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      .+||.|+..++.+.++.|+++|++++..|..|.||||.|+ .|+.+++++|+++|++++..+..|.|
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~~~~~~~~   68 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFA   68 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccccccccCcc
Confidence            5788899999999999999999999999999999999775 68899999999999999988888776

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=6e-09  Score=97.29  Aligned_cols=63  Identities=29%  Similarity=0.298  Sum_probs=47.5

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD  597 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  597 (608)
                      .+..+.+|+|.|+..++.+.++.|+++|++++.+|..|.||||+|+..++.+++++|+++||+
T Consensus       188 ~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         188 EPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC
T ss_pred             ccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence            344556777777777777777777777777777777777777777777777777777777775

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.75  E-value=6.5e-09  Score=93.77  Aligned_cols=75  Identities=17%  Similarity=0.106  Sum_probs=68.5

Q ss_pred             chhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          534 KHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       534 ~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+....++++.++..+....++.++..+.+++..|..|.||||.|+..|+.+++++|+++|||+|.+|..|+|+
T Consensus       118 ~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tp  192 (209)
T d1ot8a_         118 AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLP  192 (209)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCH
Confidence            344555678999999999999999999999999999999999999999999999999999999999999999985

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.5e-09  Score=86.23  Aligned_cols=67  Identities=25%  Similarity=0.438  Sum_probs=62.0

Q ss_pred             hhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          540 ALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       540 ~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ...||.|+..|+.+.++.|+++|++++..|..|.||+|.|+ .|+.+++++|+++|+++|.+|..|.|
T Consensus         4 ~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~   70 (125)
T d1bi7b_           4 ADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLT   70 (125)
T ss_dssp             TTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCC
T ss_pred             hhHHHHHHHCCCHHHHHHHHHcCCccccccccccccccccc-cccccccccccccccccccccccccc
Confidence            35789999999999999999999999999999999999775 79999999999999999999988764

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.73  E-value=7.5e-09  Score=94.87  Aligned_cols=76  Identities=24%  Similarity=0.290  Sum_probs=68.7

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHHHHHcC-CCCCCCCCCCchHHhHHHhcCcHHHHHHHHh-cCCCCCCcCCCCCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEGLIRAG-ADPNRTDYDGRSPLHLAASRGYEEIMTFLIQ-KGVDINLKGNSIMQI  608 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~g-a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-~ga~~~~~~~~g~T~  608 (608)
                      ...+....+++|.++..+..+.++.|+..| .+++..|.+|+||||.|+..|+.+++++|++ .|||++++|.+|+|+
T Consensus       132 ~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~  209 (229)
T d1ixva_         132 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKA  209 (229)
T ss_dssp             CCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCT
T ss_pred             cccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCH
Confidence            334556678999999999999999999987 7889999999999999999999999999996 599999999999996

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=5.1e-09  Score=105.16  Aligned_cols=72  Identities=26%  Similarity=0.272  Sum_probs=54.8

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....++++.++..+..+.++.+++.|++++.+|.+|.||||.|+..|+.++|++|+++|||+|++|.+|+|+
T Consensus       295 ~~~~t~L~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~  366 (408)
T d1n11a_         295 RMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTP  366 (408)
T ss_dssp             SSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCH
T ss_pred             ccccccchhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            344567777777777777777777777777777777778877777777777777777777777777777774

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.3e-08  Score=97.68  Aligned_cols=44  Identities=27%  Similarity=0.314  Sum_probs=39.8

Q ss_pred             CCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          565 PNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       565 ~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      +|.+|..|+||||+|+..|+.++|++|+++|||++++|.+|+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tp  295 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRP  295 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCG
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            45567789999999999999999999999999999999999995

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.8e-08  Score=85.62  Aligned_cols=67  Identities=18%  Similarity=0.187  Sum_probs=61.8

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVD  597 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  597 (608)
                      .++..+..+.+|+|+|+..++.+.++.|+++|++++..|..|.||||+|+..|+.+++++|++.++.
T Consensus        73 din~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~  139 (154)
T d1dcqa1          73 NLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG  139 (154)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             ChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence            3556677789999999999999999999999999999999999999999999999999999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=2.1e-08  Score=90.92  Aligned_cols=70  Identities=17%  Similarity=0.242  Sum_probs=64.5

Q ss_pred             hhhhhHhHHHhcCCHHHHHHHH----HcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          538 ELALKVNSAAYHGDLYQLEGLI----RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~~~~~Ll----~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ++.||||.|+..++.+.++.|+    +.|++++..|..|+||||.|+..|+.++++.|+++|++++..+..|.+
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~   75 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQT   75 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccc
Confidence            3678999999999999988876    489999999999999999999999999999999999999999888765

>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel KVAP
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.65  E-value=8.6e-09  Score=84.40  Aligned_cols=108  Identities=18%  Similarity=0.224  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHHHHhchheeec--cCCCcCeehHHHHHHHHHHHHHHhhceeeEEeCCCcEEeeccHHHHHHHhhccch
Q 007323           76 WTKFILIWAVYSSIFTPVEFGFF--RGLSKNLYVLDIVGQIAFLFDIVLQFCLAYRDSQTYRLICKRTPIALRYLRSSFI  153 (608)
Q Consensus        76 w~~~~~~~~~~~~~~~p~~~~f~--~~~~~~~~~~~~~~~~~f~~d~~~~f~t~~~~~~~~~~i~~~~~i~~~yl~~~f~  153 (608)
                      .+.++.++++.+.+++-++....  .+....+..+|.++.++|++|+++|++.+..            +  .+|.+ |-+
T Consensus         8 ~e~~i~~lillnvi~~~let~~~~~~~~~~~l~~~e~v~~~iF~~E~~lrl~~~~~------------~--~~~~~-~~~   72 (132)
T d1orsc_           8 VELGVSYAALLSVIVVVVEYTMQLSGEYLVRLYLVDLILVIILWADYAYRAYKSGD------------P--AGYVK-KTL   72 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS------------T--TTTTT-TCG
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhCCc------------c--ceeCC-cch
Confidence            56677777777777666544221  1122336789999999999999999876421            1  44554 458


Q ss_pred             hHhhhhccHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007323          154 IDLFSCMPWDLIYKASGRKEAVRYLLWIRLYRVRKVSQFFHKMEK  198 (608)
Q Consensus       154 iDl~s~lP~~~~~~~~~~~~~~~~l~l~rl~r~~r~~~~~~~~~~  198 (608)
                      +|+++++|++......+....++.+|++|++|++|+.++.++.+.
T Consensus        73 iDl~ai~p~~~~~~~~~~~~~lr~lR~~R~~R~lrl~~~~~~~~~  117 (132)
T d1orsc_          73 YEIPALVPAGLLALIEGHLAGLGLFRLVRLLRFLRILLIISRGSK  117 (132)
T ss_dssp             GGTGGGSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999877655555555677777777777777777766654

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.9e-08  Score=85.59  Aligned_cols=70  Identities=26%  Similarity=0.325  Sum_probs=62.7

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..++++.++.....+.++.+...|++.+..|..|+||||+|+..|+.+++++|+++|+|+|.+|.+|+|+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tp  136 (153)
T d1awcb_          67 DRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTA  136 (153)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccccccccccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCH
Confidence            3456777888888999999999999999999999999999999999999999999999999999999985

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=2.7e-08  Score=85.09  Aligned_cols=73  Identities=29%  Similarity=0.379  Sum_probs=62.4

Q ss_pred             hhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          535 HEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       535 ~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      .+.....+++.++..+..+..+.+++.|++++..|..|+||||+|+..|+.+++++|+ .|++++.+|.+|+|+
T Consensus        64 ~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~Tp  136 (156)
T d1bd8a_          64 QDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTP  136 (156)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCH
T ss_pred             cccccccccccccccccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCH
Confidence            3344567888889999999999999999999988888999999999999999998877 688999999999885

>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}

class: Membrane and cell surface proteins and peptides
fold: Voltage-gated potassium channels
superfamily: Voltage-gated potassium channels
family: Voltage-gated potassium channels
domain: Potassium channel protein
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.61  E-value=5e-08  Score=64.98  Aligned_cols=51  Identities=16%  Similarity=0.177  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCceecccccCCCCcccccccchHHHHHHHHHHHHHHhhcccc
Q 007323          208 RIVKLIAVELYCSHIAACIFYYLATTLPPEQEGYTWIGSLKMGDYSYADFREIGFWKSYITSMYASVVTMTTVGY  282 (608)
Q Consensus       208 ~~~~l~~~~~~~~h~~ac~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~Y~~s~y~~~~t~ttvGy  282 (608)
                      .+...++.+++++-+++++.|+++...+++                  ++      ....+|+||+++|||||||
T Consensus         7 ~~~~~~~~~~i~i~~~s~~~y~~E~~~~~~------------------~f------~sip~a~WWaivT~TTVGY   57 (57)
T d2h8pc1           7 AAGAATVLLVIVLLAGSYLAVLAERGAPGA------------------QL------ITYPRALWWACETATTVGY   57 (57)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTSTTC------------------CC------CSHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------------------cc------cccchhhhhheeeeecccC
Confidence            455555666666777899999988654332                  12      2345999999999999998

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=6.2e-08  Score=87.62  Aligned_cols=72  Identities=26%  Similarity=0.305  Sum_probs=67.8

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....++++.++..+.....+.++..|.+.+..|..|.||||.|+..|+.+++++|+++|||+|.+|.+|+|+
T Consensus       142 ~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~Tp  213 (228)
T d1k1aa_         142 KSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTP  213 (228)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCT
T ss_pred             cchhhHHHHHHHhhhhhhhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            445678899999999999999999999999999999999999999999999999999999999999999996

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=5.6e-08  Score=88.38  Aligned_cols=71  Identities=28%  Similarity=0.356  Sum_probs=63.6

Q ss_pred             hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ...++++.++..+..+.+..+...|+..+..+ ..|.||||.|+..|+.+++++|+++|||+|.+|.+|+|+
T Consensus       110 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tp  181 (221)
T d1iknd_         110 NGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP  181 (221)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCG
T ss_pred             ccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCH
Confidence            34678999999999999999999998888765 569999999999999999999999999999999999985

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.53  E-value=5.7e-08  Score=92.37  Aligned_cols=69  Identities=28%  Similarity=0.352  Sum_probs=64.9

Q ss_pred             hhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          539 LALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       539 ~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      ..++++.|+..|+.+.++.|+++|+++|..|.+|.||||+|+..|+.+++++|+++|++++..+..+.|
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~  108 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI  108 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccc
Confidence            457899999999999999999999999999999999999999999999999999999999988887776

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.7e-08  Score=87.99  Aligned_cols=77  Identities=17%  Similarity=0.189  Sum_probs=71.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ++..+....+|+|.|+..+..+.++.|+++|++++..+..|.||||.|+..++.+++++|..+|+++|.+|.+|+|+
T Consensus        96 ~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~Tp  172 (223)
T d1uoha_          96 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTP  172 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             eEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCce
Confidence            34556667889999999999999999999999999999999999999999999999999999999999999999985

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=7.5e-08  Score=87.93  Aligned_cols=63  Identities=27%  Similarity=0.448  Sum_probs=56.3

Q ss_pred             hhHhHHHhcCCHHHHHHHHHc-CCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC
Q 007323          541 LKVNSAAYHGDLYQLEGLIRA-GADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN  603 (608)
Q Consensus       541 ~~L~~aa~~~~~~~~~~Ll~~-ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~  603 (608)
                      +|+|.|+..++.+.++.|+.. +.+++.+|.+|+||||+|+..|+.+++++|+++|++++..+.
T Consensus         2 ~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~   65 (229)
T d1ixva_           2 YPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDY   65 (229)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGC
T ss_pred             HhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccc
Confidence            689999999999999888774 588889999999999999999999999999999999986543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=1.2e-08  Score=92.97  Aligned_cols=69  Identities=25%  Similarity=0.342  Sum_probs=51.4

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDIN  599 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~  599 (608)
                      .++..+..+.+|+|+|+..+..+++++|++.|++++..|..|.||||.++..++.++++.|++.+.+..
T Consensus        31 ~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~   99 (221)
T d1iknd_          31 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPH   99 (221)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTS
T ss_pred             CcccCCCCCCccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccc
Confidence            345566667777888777777777777777777777777777788887777777777777777765543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.38  E-value=1.9e-07  Score=79.20  Aligned_cols=60  Identities=18%  Similarity=0.243  Sum_probs=55.3

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHH
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL  591 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~L  591 (608)
                      .+..+..+.+|+|+|+..++.+.+++|++.|++++..|..|.||||+|+..|+.+++++|
T Consensus        93 ~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          93 VNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             cccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            344566778999999999999999999999999999999999999999999999999976

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.38  E-value=2e-07  Score=87.68  Aligned_cols=72  Identities=24%  Similarity=0.381  Sum_probs=53.8

Q ss_pred             hhhhhhHhHHHhcCCHHHHHHHH-HcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          537 AELALKVNSAAYHGDLYQLEGLI-RAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       537 ~~~~~~L~~aa~~~~~~~~~~Ll-~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ....++++.++..+..+....++ ..+.+.+..|..|+||||.|+..|+.+++++|+++|||+|++|.+|+|+
T Consensus       185 ~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~  257 (277)
T d2fo1e1         185 YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTA  257 (277)
T ss_dssp             CCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCH
T ss_pred             cCCCCccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCH
Confidence            34456777777777777776544 5567777777778888888888888888888888888888888888774

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.34  E-value=2.3e-07  Score=83.23  Aligned_cols=60  Identities=22%  Similarity=0.181  Sum_probs=55.2

Q ss_pred             ccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHH
Q 007323          532 ISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFL  591 (608)
Q Consensus       532 i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~L  591 (608)
                      .+..+..+.+|+|.|+..++.+.++.|+++|++++..|..|+||||+|+..|+.++|++|
T Consensus       149 ~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         149 RDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            344556678999999999999999999999999999999999999999999999999986

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.33  E-value=1.8e-08  Score=98.46  Aligned_cols=70  Identities=19%  Similarity=0.082  Sum_probs=53.4

Q ss_pred             cccccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC--CCCchHHhHHHhcCcHHHHHHHHhcCCCC
Q 007323          529 TFHISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTD--YDGRSPLHLAASRGYEEIMTFLIQKGVDI  598 (608)
Q Consensus       529 ~~~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d--~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~  598 (608)
                      ...++..+..+.+|+|.||..|+.+++++|++.|++++..+  .+|.||||.|+..|+.++|++|+++|++.
T Consensus       116 ~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~  187 (346)
T d2ajaa1         116 DEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE  187 (346)
T ss_dssp             CSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGG
T ss_pred             CCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcc
Confidence            34456667777888888888888888888888888877654  35788888888888888888888887765

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=9.8e-07  Score=74.93  Aligned_cols=77  Identities=25%  Similarity=0.369  Sum_probs=69.3

Q ss_pred             cccchhhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCCC
Q 007323          531 HISKHEAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       531 ~i~~~~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      ..+..+..+.+|+|.|+. +..+.++.|+..+++++..+..|.+|++.++..++.++++.++++|+++|.+|.+|+|+
T Consensus        28 ~~n~~d~~g~t~L~~A~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n~~~~~~~t~  104 (156)
T d1bd8a_          28 HPDALNRFGKTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALP  104 (156)
T ss_dssp             CTTCCCTTSCCHHHHSCT-TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCH
T ss_pred             CCCccCCCCCcccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCee
Confidence            445566777899998764 78899999999999999999999999999999999999999999999999999999884

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=98.20  E-value=5.4e-07  Score=87.71  Aligned_cols=75  Identities=15%  Similarity=0.062  Sum_probs=55.8

Q ss_pred             cchhhhhhhhHhHHHhcCCHHHHHH---HHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCC--CCCC
Q 007323          533 SKHEAELALKVNSAAYHGDLYQLEG---LIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGN--SIMQ  607 (608)
Q Consensus       533 ~~~~~~~~~~L~~aa~~~~~~~~~~---Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~--~g~T  607 (608)
                      ...+....++++.|+..|+.+.++.   |+..|+++|..|.+|+||||+|+..|+.++|++|+++|++++..+.  +|+|
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t  163 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYH  163 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCC
Confidence            3445567788888888888776655   6788888888888888888888888888888888888888887653  4554

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.4e-06  Score=79.27  Aligned_cols=70  Identities=26%  Similarity=0.335  Sum_probs=63.0

Q ss_pred             hhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCC-CCCchHHhHHHhcCcHHHHHHHHhcCCCCCCcCCCCCC
Q 007323          538 ELALKVNSAAYHGDLYQLEGLIRAGADPNRTD-YDGRSPLHLAASRGYEEIMTFLIQKGVDINLKGNSIMQ  607 (608)
Q Consensus       538 ~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d-~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~T  607 (608)
                      +..+.|+.|+..++.+.++.|+++|+++|..+ ..|+||||+|+..|+.+++++|++.|++.+..+..+.+
T Consensus         4 ~~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~   74 (285)
T d1wdya_           4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGAT   74 (285)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CCcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccch
Confidence            45678999999999999999999999998775 56999999999999999999999999999888776654

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.02  E-value=1.8e-06  Score=82.22  Aligned_cols=70  Identities=16%  Similarity=0.125  Sum_probs=56.6

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcH-------HHHHHHHhcCCCCCCcCCCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYE-------EIMTFLIQKGVDINLKGNSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~-------~~v~~Ll~~ga~~~~~~~~g~T~  608 (608)
                      |..+.+|||+|+..++.+.++.|+++|++++..|..|+||||.|+..++.       +++++|.   .+++.+|..|+|+
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~~~~~d~~g~t~  180 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PCLILEDSMNRTI  180 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GGGGEECTTCCCH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hhhhhcccccCCH
Confidence            66778999999999999999999999999999999999999999976652       3444443   4566778888874

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=5.4e-06  Score=70.02  Aligned_cols=73  Identities=27%  Similarity=0.354  Sum_probs=48.5

Q ss_pred             hhhhhhhHhHHHhcCCHHHHHHHHHcCCCCCCCCCCCchHHhHHHhcCcHHHHHHHHhcCC-CCCCcCCCCCCC
Q 007323          536 EAELALKVNSAAYHGDLYQLEGLIRAGADPNRTDYDGRSPLHLAASRGYEEIMTFLIQKGV-DINLKGNSIMQI  608 (608)
Q Consensus       536 ~~~~~~~L~~aa~~~~~~~~~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga-~~~~~~~~g~T~  608 (608)
                      +....++++.++..+..+....++..+.+.+..|..|.+|+|.|+..++.+++++|+++|+ +++.+|.+|+|+
T Consensus        63 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~Tp  136 (156)
T d1ihba_          63 DRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTA  136 (156)
T ss_dssp             CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCH
T ss_pred             cccCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCH
Confidence            3334455555666666666666666666666666777777777777777777777777664 677777777764

>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: Listeriolysin regulatory protein PrfA, N-terminal domain
domain: Listeriolysin regulatory protein PrfA, N-terminal domain
species: Bacteria (Listeria monocytogenes) [TaxId: 1639]

Probab=95.19  E-value=0.32  Score=34.57  Aligned_cols=102  Identities=16%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             HceeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCc--ccEEEEe-ceeee
Q 007323          409 RLHEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQ--PYTVQVC-ELCRL  485 (608)
Q Consensus       409 ~~~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~--~~~~~a~-~~~~l  485 (608)
                      .++++.+.+.|.|+.|=||.+...|+-+|..++...+++|.-.-+. .-.|.+.=...++.....  -+....+ +....
T Consensus        10 gikpk~f~kke~ifnqwdp~eycifl~dgiakltsiseng~imnlq-yykgafiimsg~idt~~~lgyynlevise~ata   88 (131)
T d2bgca2          10 GIKPKQFHKKELIFNQWDPQEYCIFLYDGITKLTSISENGTIMNLQ-YYKGAFVIMSGFIDTETSVGYYNLEVISEQATA   88 (131)
T ss_dssp             TCCCEEEETTCEEECTTCCCCEEEEEEESEEEEEEECTTSCEEEEE-EEESSEEEESBCTTTCCBSCCCEEEECSSEEEE
T ss_pred             CCChhhhchhheeecccCcceeEEeeecchHHhcccccCCcEEeee-eccccEEEEecccccCCccceeeeeeehhccee
Confidence            5789999999999999999999999999999999999998753333 345666544444432221  2445554 34678


Q ss_pred             EEechhhHHHHHHHhhhcHHHHHHHH
Q 007323          486 LRIDKQSFTNIIDIYFCDGRKVLTNL  511 (608)
Q Consensus       486 ~~l~~~~~~~ll~~~~~~~~~il~~l  511 (608)
                      +.+...++.+++...-...-.+++.+
T Consensus        89 yvikisdlk~lvs~dl~~~fyi~~tl  114 (131)
T d2bgca2          89 YVIKINELKELLSKNLTHFFYVFQTL  114 (131)
T ss_dssp             EEEEHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             eeEEHHHHHHHHHHhHHHHHHHHHHH
Confidence            88999999999887543333344444

>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]}

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: RmlC-like cupins
family: TM1287-like
domain: Hypothetical protein SPy1581
species: Streptococcus pyogenes [TaxId: 1314]

Probab=86.68  E-value=1.5  Score=32.87  Aligned_cols=67  Identities=12%  Similarity=0.014  Sum_probs=47.3

Q ss_pred             eeeeecCCCeEEccCCccCeEEEEEeeEEEEEEeccCCceeeeEEeCCCCeecchhhhcCCCcccEEEEeceeeeEEe
Q 007323          411 HEEFFLPGEVIMEKGNVVDQLYFVCLGKLEEVGIEENGTEDYVSYLHPNSSFGEVSILCNIPQPYTVQVCELCRLLRI  488 (608)
Q Consensus       411 ~~~~~~~g~~i~~~g~~~~~ly~i~~G~v~~~~~~~~g~~~~~~~l~~G~~fGe~~~~~~~~~~~~~~a~~~~~l~~l  488 (608)
                      ....+.||+.+-..--+.+.++++++|++.+..   +|++   ..+++|+++=-.     ......++|.+++.++.+
T Consensus        40 ~~~~~~~G~~~~~H~h~~~~~~~vl~G~~~~~~---~~~~---~~l~~Gd~~~ip-----~~~~H~~~a~~~~~~l~~  106 (112)
T d1yhfa1          40 TVFSLDKGQEIGRHSSPGDAMVTILSGLAEITI---DQET---YRVAEGQTIVMP-----AGIPHALYAVEAFQMLLV  106 (112)
T ss_dssp             EEEEECTTCEEEEECCSSEEEEEEEESEEEEEE---TTEE---EEEETTCEEEEC-----TTSCEEEEESSCEEEEEE
T ss_pred             EEEEECCCCCcceEECCCCEEEEEEeCEEEEEE---ccEE---EEecCCEEEEcC-----CCCeEEeEECCCcEEEEE
Confidence            445678898886665567789999999999875   4543   567899875432     233467888888776654