Citrus Sinensis ID: 007371

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600------
Protein Sequence
MAEVGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQIQHLFNEKGKTAEIGYIFSFTT
Secondary Structure (PSIPRED)
cccccEEHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEcccccHHHHHHHHccccEEEEccccccHHHHHHcccccEEEEcccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHcccccccEEccccccccEEEccccccccccccEEEccccccccEEccccccccHHHHcccccccEEEEEEcccccccccccccccccEEEEEcccccccccccccccccccEEEEcccccccccccccccHHcccccccEEEcccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHcccccccccccccccEEEcccccccccccccccccccccccEEEEcccccccHHHcccccccccccccccccccccEEEccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEccccccHHccHHHHHHHHHHHcccccccccccHHcHHHHHHHHHHHHHHHcccccccEEccHHHHHHHHHHHHHcccEEEEcccccccccHHHHHcccEEEEEccccHHHccccccccccEEEEEcccccccccHHHHHcccccEEEEccccccccccccHHHHHcccEEEcccccccccHHHHHHcccEEEEcccccHHHccHHHHHHHcccEEEccccccccEccHHHHHHHHHccEEEEccccccccccccccHHHHHHHHHcccccEEEEEEccHHcccccccHccHHHEEEEHcccEEccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHcHHHHcccccccccccccEEEEEccccHHHHHccccccccccHHHHHHHHccccccccccccccccccEEEEcccHHHHHHcccccccccccccccEEEEcccccccEcccHHHHHcHHcccEEEEcccHHHHHHEcccccccccccccccccccccEEEEccccccccccccccccccccccEEEEEcccccHccccccccccccccccccHHHHHccccHHcccccccccccccccEEEEEEEEEEcc
Coil and Loop (DISEMBL)
MAEVGLAAFSSIVAEELEldvvgipsgdvaekdrkddqRRCTIILTSRKQDLLRIDMScqknfpidalpRKEALQLFEKRMFNIPNVADLEKKMEETIrkdpiaisltyggiqvlperlqcpclellhtegdgsmqvsdhffkgteglkvLNFTrihfsslpsslgcLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLqlldlsncwlleviapnvISKLSQLEELymgnsfsgwekveggsnasLVELERLTKLATLEIEVadaeilppnfvsvELQRYRIrigdesedefdpllvkseaprLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHelddgegfprlkhlhvKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLshfprlkeiwhgqalpvsffNNLFDLVvddctnmssaipaNLLRCLNNLVYLEVRNCDSLEEVLHLEELINadkehigplfpklfklrltdlpklkrfCNFTRNiielpklryltiencpdmetfisnSTSVLHMTADNKEAQKLKSEKNLLVADQIQHLFNEKGKTAEIGYIFSFTT
Flexible Loop (DISEMBL)
MAEVGLAAFSSIVaeeleldvvgipsgdvaekdrkddqrrctiiltsrkqdllrIDMSCqknfpidalPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIevadaeilppnfvsvELQRYRIRigdesedefdplLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHivgsvrreegelrrwegnlnSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNftrniielpklryLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQIQHLfnekgktaeiGYIFSFTT
Low Complexity Region (SEG)
MAEVGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVrreegelrrwegNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQIQHLFNEKGKTAEIGYIFSFTT
Disordered region (IsUnstruct)
*****LAAFSSIVAEELELDVVGIP**************RCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDE***EFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLH***************NLLVADQIQHLFNEKGKTAEIGYIFSF**
Disordered Region (DISOPRED)
*AEVGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI*P*VISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLL*KSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNST****YE*MIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEE********IGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQIQHLFNEKGKTAEIGYIFSFT*
Disordered Region (DISEMBL)
MAEVGLAAFSSIVAEELELDVVGIPSGD*********QRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQIQHLFNEKGKTAEIGYIFSFTT
Disordered Region (DISPRO)
*AEVGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQIQHLFNEKGKTAEIGYIFSFTT
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAEVGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQIQHLFNEKGKTAEIGYIFSFTT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	606	2.2.26 [Sep-21-2011]
Q9T048	985	Disease resistance protei	yes	no	0.658	0.405	0.251	3e-12
Q42484	909	Disease resistance protei	no	no	0.584	0.389	0.245	3e-12
O81825	919	Probable disease resistan	no	no	0.635	0.418	0.247	5e-12
B3LWU3	641	Leucine-rich repeat prote	N/A	no	0.275	0.260	0.251	4e-06
B4N9T4	641	Leucine-rich repeat prote	N/A	no	0.321	0.304	0.25	5e-06
Q9LRR4	1054	Putative disease resistan	no	no	0.493	0.283	0.239	8e-06
Q9FRS6	1029	Leucine-rich repeat recep	no	no	0.226	0.133	0.356	8e-06
B5DX45	629	Leucine-rich repeat prote	yes	no	0.321	0.310	0.245	8e-06
Q9VEK6	641	Leucine-rich repeat prote	no	no	0.321	0.304	0.245	1e-05
B4IBI9	683	Leucine-rich repeat prote	N/A	no	0.321	0.285	0.240	2e-05

>sp|Q9T048|DRL27_ARATH Disease resistance protein At4g27190 OS=Arabidopsis thaliana GN=At4g27190 PE=2 SV=1

 Score = 74.3 bits (181), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 114/453 (25%), Positives = 207/453 (45%), Gaps = 54/453 (11%)

Query: 96  ETIRKDPIA-----ISLTYGGIQVLPERLQCPCLE--LLHTEGDGSM-QVSDHFFKGTEG 147
           + IR+D +A     +SL    ++ LP+ ++  C++  +L  +G+  + +V   F +    
Sbjct: 492 QDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPT 551

Query: 148 LKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYC-RLKDIAIVGQLKKLEILILARSTIKQ 205
           L++LN +     S PS SL  L +L +L L  C +L  +  +  L KLE+L L  + I +
Sbjct: 552 LRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILE 611

Query: 206 LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGS---NA 262
            P  + +L R + LDLS    LE I   V+S+LS LE L M +S   W  V+G +    A
Sbjct: 612 FPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRW-SVQGETQKGQA 670

Query: 263 SLVELERLTKLATLEIEVADAEIL--PPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAP 320
           ++ E+  L +L  L I +  +  L    N     L+++++ +G         L  + +  
Sbjct: 671 TVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSRY-----ILRTRHDKR 725

Query: 321 RLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHEL-DDGEGFPRLKHLHV 379
           RL     +  +++ Q + G   LL  T  L L   +G+++++ +L  D +GF  LK L +
Sbjct: 726 RLT----ISHLNVSQVSIG--WLLAYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSLTI 779

Query: 380 KSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGF---RDIIHLQLSHFPRLKE 436
           ++      I+ +          W   +++   K   +++      + +HL+        E
Sbjct: 780 ENV-----IINT--------NSWVEMVSTNTSKQSSDILDLLPNLEELHLRRVDLETFSE 826

Query: 437 IWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEE 496
           +     L +     L  + +  C  + + +       + NL  +E+  CDSL+  LH E 
Sbjct: 827 LQTHLGLKL---ETLKIIEITMCRKLRTLLDKRNFLTIPNLEEIEISYCDSLQN-LH-EA 881

Query: 497 LINADKEHIGPLFPKLFKLRLTDLPKLKRFCNF 529
           L+     +  P  P L  L+L +LP L   CN+
Sbjct: 882 LL-----YHQPFVPNLRVLKLRNLPNLVSICNW 909

Disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q42484|RPS2_ARATH Disease resistance protein RPS2 OS=Arabidopsis thaliana GN=RPS2 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 117/476 (24%), Positives = 182/476 (38%), Gaps = 122/476 (25%)

Query: 85  PNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQ-VSDHFFK 143
           P++   E    E  R+  + ISL    IQ LPE+L CP L  L  + + S++ +   FF 
Sbjct: 497 PSMGHTEAPKAENWRQ-ALVISLLDNRIQTLPEKLICPKLTTLMLQQNSSLKKIPTGFFM 555

Query: 144 GTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTI 203
               L+VL+ +    + +P S+  L+ L  L +                      + + I
Sbjct: 556 HMPVLRVLDLSFTSITEIPLSIKYLVELYHLSM----------------------SGTKI 593

Query: 204 KQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNAS 263
             LP E+G L +L+ LDL     L+ I  + I  LS+LE L +  S++GWE    G + +
Sbjct: 594 SVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEA 653

Query: 264 ----LVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEA 319
                 +LE L  L TL I V   E L   F    L ++   +  E  +E    L+    
Sbjct: 654 EELGFADLEYLENLTTLGITVLSLETLKTLFEFGALHKHIQHLHVEECNE----LLYFNL 709

Query: 320 PRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELD-DGEGFPRLKHLH 378
           P L              N G    L+R   L +++   ++ +V   D + +  P L+ L 
Sbjct: 710 PSLT-------------NHGRN--LRR---LSIKSCHDLEYLVTPADFENDWLPSLEVLT 751

Query: 379 VKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIW 438
           + S   +  + G                NS  Q C       R+I  + +SH  +LK + 
Sbjct: 752 LHSLHNLTRVWG----------------NSVSQDC------LRNIRCINISHCNKLKNVS 789

Query: 439 HGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELI 498
             Q LP                                L  +E+ +C  +EE++      
Sbjct: 790 WVQKLP-------------------------------KLEVIELFDCREIEELI------ 812

Query: 499 NADKEHIGP------LFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCP 548
               EH  P      LFP L  LR  DLP+L    +   +     K+  L I NCP
Sbjct: 813 ---SEHESPSVEDPTLFPSLKTLRTRDLPELN---SILPSRFSFQKVETLVITNCP 862

Disease resistance (R) protein that specifically recognizes the AvrRpt2 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is degraded by AvrRpt2.

Arabidopsis thaliana (taxid: 3702)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 109/441 (24%), Positives = 183/441 (41%), Gaps = 56/441 (12%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCR-LKDIAIVGQLKKLE 194
           +V + F +    L++L+ + +   +LP S   L +L++L L  C+ L+++  +  L KL+
Sbjct: 508 EVPNGFLQAFPNLRILDLSGVRIRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQ 567

Query: 195 ILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW- 253
            L L  S I++LP  +  L+ L+ + +SN + L+ I    I +LS LE L M  S   W 
Sbjct: 568 FLDLHESAIRELPRGLEALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSWG 627

Query: 254 ---EKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEF 310
              E+ EG   A+L E+  L  L  L I++ D       F S+  +  + +        F
Sbjct: 628 IKGEEREG--QATLDEVTCLPHLQFLAIKLLDVLSFSYEFDSLTKRLTKFQF------LF 679

Query: 311 DPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHEL--DDG 368
            P  ++S +P       L    +   N     LLQ    L L   EG+  +   L     
Sbjct: 680 SP--IRSVSPPGTGEGCLAISDVNVSNASIGWLLQHVTSLDLNYCEGLNGMFENLVTKSK 737

Query: 369 EGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQL 428
             F  +K L +       H   S+    G               C  ++  F ++  L L
Sbjct: 738 SSFVAMKALSI-------HYFPSLSLASG---------------CESQLDLFPNLEELSL 775

Query: 429 SHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLR-CLNNLVYLEVRNCDS 487
            +   L+ I             L  L V  C  +       +L   L NL  ++V +C  
Sbjct: 776 DNV-NLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQILAGTLPNLQEIKVVSC-- 832

Query: 488 LEEVLHLEELINADKEHIG----PLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLT 543
               L LEEL N     +      L PKL  ++L  LP+L+  CN   + + L  L +L 
Sbjct: 833 ----LRLEELFNFSSVPVDFCAESLLPKLTVIKLKYLPQLRSLCN---DRVVLESLEHLE 885

Query: 544 IENCPDMET--FISNSTSVLH 562
           +E+C  ++   F+  +T +++
Sbjct: 886 VESCESLKNLPFVPGNTGMIN 906

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|B3LWU3|SUR8_DROAN Leucine-rich repeat protein soc-2 homolog OS=Drosophila ananassae GN=Sur-8 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 46/183 (25%), Positives = 85/183 (46%), Gaps = 16/183 (8%)

Query: 73  ALQLFEKRMFNIPN-VADLEKKMEETIRKDPIAISLTYGGIQVLPERLQ-CPCLELLHTE 130
           AL L    + +IP+ + +L         K  + + + Y  +  +P  L+ C C++  + E
Sbjct: 325 ALDLQHNELLDIPDSIGNL---------KSLVRLGMRYNRLTSVPATLKNCKCMDEFNVE 375

Query: 131 GDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGC-LINLQTLCLDYCRLKDI--AIV 187
           G+G  Q+ D       GL  +  +R  F+S P+       N+ ++ L++ R+  I   I 
Sbjct: 376 GNGITQLPDGMLASLSGLTTITLSRNQFTSYPTGGPAQFTNVYSINLEHNRIDKIPYGIF 435

Query: 188 GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG 247
            + K L  L +  + +  LPL+IG    +  L+L+   L ++  P+ I  L  LE L + 
Sbjct: 436 SRAKGLTKLNMKENMLTALPLDIGTWVNMVELNLATNALQKL--PDDIMNLQNLEILILS 493

Query: 248 NSF 250
           N+ 
Sbjct: 494 NNM 496

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila ananassae (taxid: 7217)

>sp|B4N9T4|SUR8_DROWI Leucine-rich repeat protein soc-2 homolog OS=Drosophila willistoni GN=Sur-8 PE=3 SV=1

 Score = 53.5 bits (127), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 25/220 (11%)

Query: 73  ALQLFEKRMFNIPN-VADLEKKMEETIRKDPIAISLTYGGIQVLPERLQ-CPCLELLHTE 130
           AL L    + +IP+ + +L         K  + + L Y  +  +P  L+ C  ++  + E
Sbjct: 325 ALDLQHNELLDIPDSIGNL---------KSLVRLGLRYNRLTSVPASLKNCKSMDEFNVE 375

Query: 131 GDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDI--AIV 187
           G+G  Q+ D       GL ++  +R  F+S P+       N+  + L++ R+  I   I 
Sbjct: 376 GNGITQLPDGMLASLNGLTIITLSRNQFTSYPTGGPAQFTNVYNINLEHNRIDKIPYGIF 435

Query: 188 GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG 247
            + K L  L +  + +  LPL+IG    +  L+L+   L ++  P+ I  L  LE L + 
Sbjct: 436 SRAKGLTKLNMKENMLTALPLDIGTWVNMVELNLATNALQKL--PDDIMNLQNLEILILS 493

Query: 248 NSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILP 287
           N+    +K+          +  L KL  L++E    E+LP
Sbjct: 494 NNM--LKKIPN-------TIGNLRKLRILDLEENRIEVLP 524

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila willistoni (taxid: 7260)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 88/367 (23%), Positives = 144/367 (39%), Gaps = 68/367 (18%)

Query: 141 FFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC-RLKDIAI-VGQLKKLEILIL 198
           FFK     + L+ +R     LP SL  + NLQTL L YC  LK++   +  L  L  L L
Sbjct: 597 FFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDL 656

Query: 199 ARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG 258
             + ++Q+P   G+L  LQ L     + +     + IS+L  L +L+             
Sbjct: 657 IGTKLRQMPRRFGRLKSLQTL---TTFFVSASDGSRISELGGLHDLH------------- 700

Query: 259 GSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQR---YRIRIG-DESEDEFDPLL 314
                +VEL+R+       ++VADA     N  S +  R   +  R G   SE+  +P  
Sbjct: 701 -GKLKIVELQRV-------VDVADAA--EANLNSKKHLREIDFVWRTGSSSSENNTNPHR 750

Query: 315 VKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGL----WLETLEGVQSVVHELDDGEG 370
            ++EA     L+    +         K+ ++R +G     WL      + V   L + + 
Sbjct: 751 TQNEAEVFEKLRPHRHIE--------KLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQY 802

Query: 371 FPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCY--------EEMIGFRD 422
              L  L    C + LHI G V             L S  +K Y        ++   FR 
Sbjct: 803 CTSLPSLGQLPCLKELHISGMV------------GLQSIGRKFYFSDQQLRDQDQQPFRS 850

Query: 423 IIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEV 482
           +  L+  + P  +E    +      F +L  L +  C  ++  +P      L +L+ L +
Sbjct: 851 LETLRFDNLPDWQEWLDVRVTRGDLFPSLKKLFILRCPELTGTLPT----FLPSLISLHI 906

Query: 483 RNCDSLE 489
             C  L+
Sbjct: 907 YKCGLLD 913

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRS6|PXL1_ARATH Leucine-rich repeat receptor-like protein kinase PXL1 OS=Arabidopsis thaliana GN=PXL1 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 75/143 (52%), Gaps = 6/143 (4%)

Query: 148 LKVLNFTRIHF-SSLPSSLGCLINLQTLCLDYCRL--KDIAIVGQLKKLEILILARST-I 203
           L+VL+F   +F  S+PSS   L NL+ L L       K   ++G+L  LE +IL  +  +
Sbjct: 175 LEVLDFRGGYFEGSVPSSFKNLKNLKFLGLSGNNFGGKVPKVIGELSSLETIILGYNGFM 234

Query: 204 KQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNA 262
            ++P E G+LTRLQ LDL+   L   I P+ + +L QL  +Y+  N  +G    E G   
Sbjct: 235 GEIPEEFGKLTRLQYLDLAVGNLTGQI-PSSLGQLKQLTTVYLYQNRLTGKLPRELGGMT 293

Query: 263 SLVELERLTKLATLEIEVADAEI 285
           SLV L+      T EI +   E+
Sbjct: 294 SLVFLDLSDNQITGEIPMEVGEL 316

Involved in the regulation of procambium maintenance and polarity during vascular-tissue development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|B5DX45|SUR8_DROPS Leucine-rich repeat protein soc-2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=Sur-8 PE=3 SV=1

 Score = 52.8 bits (125), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 25/220 (11%)

Query: 73  ALQLFEKRMFNIPN-VADLEKKMEETIRKDPIAISLTYGGIQVLPERLQ-CPCLELLHTE 130
           AL L    + +IP+ + +L         K  + + L Y  +  +P  L+ C  ++  + E
Sbjct: 313 ALDLQHNELLDIPDSIGNL---------KSLVRLGLRYNRLSSVPATLKNCKSMDEFNVE 363

Query: 131 GDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDI--AIV 187
           G+G  Q+ D       GL  +  +R  F+S P+       N+ ++ L++ R+  I   I 
Sbjct: 364 GNGMTQLPDGMLASLSGLTTITLSRNQFTSYPTGGPAQFTNVYSINLEHNRIDKIPYGIF 423

Query: 188 GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG 247
            + K L  L +  + +  LPL+IG    +  L+L+   L ++  P+ I  L  LE L + 
Sbjct: 424 SRAKGLTKLNMKENMLTALPLDIGTWVNMVELNLATNALQKL--PDDIMNLQNLEILILS 481

Query: 248 NSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILP 287
           N+    +K+          +  + KL  L++E    E+LP
Sbjct: 482 NNM--LKKIPN-------TIGNMRKLRILDLEENRIEVLP 512

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q9VEK6|SUR8_DROME Leucine-rich repeat protein soc-2 homolog OS=Drosophila melanogaster GN=Sur-8 PE=2 SV=3

 Score = 52.4 bits (124), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/220 (24%), Positives = 99/220 (45%), Gaps = 25/220 (11%)

Query: 73  ALQLFEKRMFNIPN-VADLEKKMEETIRKDPIAISLTYGGIQVLPERLQ-CPCLELLHTE 130
           AL L    + +IP+ + +L         K  + + + Y  +  +P  L+ C  ++  + E
Sbjct: 325 ALDLQHNELLDIPDSIGNL---------KSLVRLGMRYNRLSSVPATLKNCKSMDEFNVE 375

Query: 131 GDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGC-LINLQTLCLDYCRLKDI--AIV 187
           G+G  Q+ D       GL  +  +R  F+S P+       N+ ++ L++ R+  I   I 
Sbjct: 376 GNGITQLPDGMLASLSGLTTITLSRNQFASYPTGGPAQFTNVYSINLEHNRIDKIPYGIF 435

Query: 188 GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG 247
            + K L  L +  + +  LPL+IG    +  L+L+   L ++  P+ I  L  LE L + 
Sbjct: 436 SRAKGLTKLNMKENMLTALPLDIGTWVNMVELNLATNALQKL--PDDIMNLQNLEILILS 493

Query: 248 NSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILP 287
           N+    +K+          +  L KL  L++E    E+LP
Sbjct: 494 NNM--LKKIPN-------TIGNLRKLRILDLEENRIEVLP 524

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila melanogaster (taxid: 7227)

>sp|B4IBI9|SUR8_DROSE Leucine-rich repeat protein soc-2 homolog OS=Drosophila sechellia GN=Sur-8 PE=3 SV=1

 Score = 51.6 bits (122), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 53/220 (24%), Positives = 99/220 (45%), Gaps = 25/220 (11%)

Query: 73  ALQLFEKRMFNIPN-VADLEKKMEETIRKDPIAISLTYGGIQVLPERLQ-CPCLELLHTE 130
           AL L    + +IP+ + +L         K  + + + Y  +  +P  L+ C  ++  + E
Sbjct: 328 ALDLQHNELLDIPDSIGNL---------KSLVRLGMRYNRLSSVPATLKNCKSMDEFNVE 378

Query: 131 GDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGC-LINLQTLCLDYCRLKDI--AIV 187
           G+G  Q+ D       GL  +  +R  F+S P+       N+ ++ L++ R+  I   I 
Sbjct: 379 GNGITQLPDGMLASLSGLTTITLSRNQFASYPTGGPAQFTNVYSINLEHNRIDKIPYGIF 438

Query: 188 GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG 247
            + K L  L +  + +  LPL+IG    +  L+L+   L ++  P+ I  L  LE L + 
Sbjct: 439 SRAKGLTKLNMKENMLTALPLDIGTWVNMVELNLATNALQKL--PDDIMNLQNLEILILS 496

Query: 248 NSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILP 287
           N+    +K+          +  L +L  L++E    E+LP
Sbjct: 497 NNM--LKKIPN-------TIGNLRRLRILDLEENRIEVLP 527

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Drosophila sechellia (taxid: 7238)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	606
224111296	1315	cc-nbs-lrr resistance protein [Populus t	0.655	0.301	0.404	7e-65
255542484	2460	phosphoprotein phosphatase, putative [Ri	0.691	0.170	0.392	3e-64
255563252	1603	Disease resistance protein RPS5, putativ	0.762	0.288	0.376	7e-64
359488101	1677	PREDICTED: disease resistance protein At	0.648	0.234	0.414	9e-62
147865073	1694	hypothetical protein VITISV_021876 [Viti	0.648	0.231	0.414	6e-61
147844589	1849	hypothetical protein VITISV_039838 [Viti	0.679	0.222	0.371	1e-60
302143590	948	unnamed protein product [Vitis vinifera]	0.648	0.414	0.407	2e-60
224125154	949	cc-nbs-lrr resistance protein [Populus t	0.655	0.418	0.380	3e-60
359488108	1436	PREDICTED: disease resistance protein At	0.648	0.273	0.405	5e-60
255574526	1232	Disease resistance protein RFL1, putativ	0.785	0.386	0.375	7e-60

>gi|224111296|ref|XP_002332952.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834264|gb|EEE72741.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  254 bits (650), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 178/440 (40%), Positives = 256/440 (58%), Gaps = 43/440 (9%)

Query: 104 AISLTYGGIQVLPERLQCPCL-ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP 162
           AISL +  I  LP  L+CP L   L    D S+Q+ D FF+  + LK+L+ T ++ S LP
Sbjct: 499 AISLPFRKIPDLPAILECPNLNSFLLLNKDPSLQIPDSFFREMKELKILDLTEVNLSPLP 558

Query: 163 SSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLS 222
           SSL  L NLQTLCLD+C L+DI+I+G+L KL++L L  S I +LP EIG++TRLQLLDLS
Sbjct: 559 SSLQFLENLQTLCLDHCVLEDISIIGELNKLKVLSLMSSNIVRLPREIGKVTRLQLLDLS 618

Query: 223 NCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGS----NASLVELERLTKLATLEI 278
           NC  LEVI+PN +S L++LE+LYMGNSF  WE  EG S    NA L EL+ L+ L+TL +
Sbjct: 619 NCERLEVISPNALSSLTRLEDLYMGNSFVKWE-TEGSSSQRNNACLSELKHLSNLSTLHM 677

Query: 279 EVADAEILPPNFVSV--ELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQE 336
           ++ DA+ +P +  S    L+R+RI IGD  +       VK    R + LK     +++Q 
Sbjct: 678 QITDADNMPKDLFSSFQNLERFRIFIGDGWD-----WSVKDATSRTLKLK---LNTVIQL 729

Query: 337 NDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREE 396
            +G   LL+ TE L L+ L GV+S++++L DGEGFP+L+HLHV++C  + +I+ S+R   
Sbjct: 730 EEGVNTLLKITEELHLQELNGVKSILNDL-DGEGFPQLRHLHVQNCPGVQYIINSIR--- 785

Query: 397 GELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVV 456
                                  F ++  L L +   L++I HGQ +  S   NL  L V
Sbjct: 786 -----------------MGPRTAFLNLDSLFLENLDNLEKICHGQLMAES-LGNLRILKV 827

Query: 457 DDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLE-ELINADKEHIGPLFPKLFKL 515
           + C  + +    ++ R L  L  + + +C  +EEV+  E E   AD E I   F +L +L
Sbjct: 828 ESCHRLKNLFSVSMARRLVRLEEITIIDCKIMEEVVAEESENDAADGEPIIE-FTQLRRL 886

Query: 516 RLTDLPKLKRFCNFTRNIIE 535
            L  LP+   F +F  N+ E
Sbjct: 887 TLQCLPQ---FTSFHSNVEE 903

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542484|ref|XP_002512305.1| phosphoprotein phosphatase, putative [Ricinus communis] gi|223548266|gb|EEF49757.1| phosphoprotein phosphatase, putative [Ricinus communis]

 Score =  253 bits (645), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 179/456 (39%), Positives = 263/456 (57%), Gaps = 37/456 (8%)

Query: 78  EKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLE-LLHTEGDGSMQ 136
           +  +F +   + LE+  E+ I +   AISL    I  LPE  +CP L+  L    D S++
Sbjct: 430 DHHVFAVACDSGLEEWPEKDILEQFTAISLPDCKIPKLPEVFECPDLQSFLLYNKDSSLK 489

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEIL 196
           + D+FF   + LK+++ + +H S +P SL CL NLQTLCLD C L+DIA +G+LKKL++L
Sbjct: 490 IPDNFFSRMKKLKLMDLSNVHLSPMPLSLQCLENLQTLCLDRCTLEDIAAIGELKKLQVL 549

Query: 197 ILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV 256
               ST+ QLP E+G+LTRLQLLDLS C  LEVI   V+S L++LEELYMGNSF  WE  
Sbjct: 550 SFIGSTMVQLPREVGKLTRLQLLDLSRCQKLEVIPKGVLSCLTKLEELYMGNSFVQWESE 609

Query: 257 EGG---SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPL 313
           E     +NASL EL+ L  L TLE+ + +AEILP +  S +L  Y++ IG+E        
Sbjct: 610 EHDGDRNNASLDELKLLPNLVTLELHIINAEILPRDVFSEKLDLYKVFIGEEWS-----W 664

Query: 314 LVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPR 373
             K EA R + LK    + I    +  K+LL  TE L+L+ LEGV++V++EL DG+GFP+
Sbjct: 665 FGKYEASRTLKLKLNSSIEI----EKVKVLLMTTEDLYLDELEGVRNVLYEL-DGQGFPQ 719

Query: 374 LKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPR 433
           LKHLH+++ SEI +IV  +           GN            I F  +  L + +   
Sbjct: 720 LKHLHIQNSSEIQYIVDCLSM---------GN----------HYIAFPRLESLLVDNLNN 760

Query: 434 LKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLH 493
           L +I +GQ +  S F+ L  L V+ C  + +    ++ R L  L  ++V +C+ +EE++ 
Sbjct: 761 LGQICYGQLMSGS-FSKLRKLKVEHCNALKNLFYFSMFRGLVQLEEIDVSSCNIMEEIVV 819

Query: 494 LEELINADK-EHIGPLFPKLFKLRLTDLPKLKRFCN 528
            E   ++ + E I P+  +L  L L  LP+   FC+
Sbjct: 820 EEIEDDSGRDEIIKPI--RLRTLTLEYLPRFTSFCS 853

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563252|ref|XP_002522629.1| Disease resistance protein RPS5, putative [Ricinus communis] gi|223538105|gb|EEF39716.1| Disease resistance protein RPS5, putative [Ricinus communis]

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 188/499 (37%), Positives = 272/499 (54%), Gaps = 37/499 (7%)

Query: 36  DDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEK--RMFNIPNVADLEKK 93
           D + R   +++  K   L +D   +    I  + R  A+ +  +   +F + N A L++ 
Sbjct: 437 DARNRVHKLISDLKAACLLLDSDIKGRVKIHDVVRDVAISIASRMQHLFTVRNGALLKEW 496

Query: 94  MEETIRKDPIAISLTYGGIQVLPERLQCPCLEL--LHTEGDGSMQVSDHFFKGTEGLKVL 151
             + + K    ISL Y  I  LPE L+CP LEL  L T+ D S++V D  F+ T+ L+VL
Sbjct: 497 PNKDVCKSCTRISLPYNDIHGLPEVLECPELELFLLFTQ-DISLKVPDLCFELTKNLRVL 555

Query: 152 NFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIG 211
           NFT +HFSSLP SLG L NL TLCLD+C L+D+AI+G+L  L IL    S I +LP EI 
Sbjct: 556 NFTGMHFSSLPPSLGFLKNLFTLCLDWCALRDVAIIGELTGLTILSFKHSDIVELPREIR 615

Query: 212 QLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW--EKVEGGSNASLVELER 269
           QLT+L+ LDLS+C  L+VI   +IS+L+QLEELYM NSF  W  + +    NASL ELE 
Sbjct: 616 QLTKLKFLDLSHCLKLKVIPAKIISELTQLEELYMNNSFDLWDVQGINNQRNASLAELEC 675

Query: 270 LTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLE 329
           L  L TLEI V DA+ILP +    +L+R+RI IGD      D         R + LK L 
Sbjct: 676 LPYLTTLEICVLDAKILPKDLFFRKLERFRIFIGDVWSGTGD-----YGTSRTLKLK-LN 729

Query: 330 KVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIV 389
             SI  E+ G  +LL+ TE L+L  ++G++SV+++L D +GF +LKHL V++  EI +I+
Sbjct: 730 TSSIHLEH-GLSILLEVTEDLYLAEVKGIKSVLYDL-DSQGFTQLKHLDVQNDPEIQYII 787

Query: 390 GSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFN 449
              RR                         F  +  L L +   L++I  G+ L    F+
Sbjct: 788 DPNRRSPCN--------------------AFPILESLYLDNLMSLEKICCGK-LTTGSFS 826

Query: 450 NLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLF 509
            L  L V  C  + +    +++RCL  L  ++V +C +LEE++      + D ++     
Sbjct: 827 KLRSLTVVKCDRLKNLFSFSMMRCLLQLQQMKVVDCANLEEIVACGSE-DTDNDYEAVKL 885

Query: 510 PKLFKLRLTDLPKLKRFCN 528
            +L  L L  LP  K FC+
Sbjct: 886 TQLCSLTLKRLPMFKSFCS 904

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488101|ref|XP_002263761.2| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  244 bits (623), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 178/429 (41%), Positives = 243/429 (56%), Gaps = 36/429 (8%)

Query: 104 AISLTYGGIQVLPERLQCPCLELL---HTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS 160
           ++SL    I+ LPE L CP LEL        + ++Q+ + FF+  + LKVL+ +R+   S
Sbjct: 507 SVSLHDCDIRELPEGLVCPKLELFGCYDVNTNLAVQIPNKFFEEMKQLKVLDLSRMQLPS 566

Query: 161 LPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLD 220
           LP SL CL NL+TLCL+ C++ DI I+ +LKKLEIL L  S ++QLP EI QLT L+LLD
Sbjct: 567 LPLSLHCLTNLRTLCLNGCKVGDIVIIAKLKKLEILSLIDSDMEQLPREIAQLTHLRLLD 626

Query: 221 LSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEV 280
           LS    L+VI   VIS LSQLE L M NSF+ WE  EG SNA L EL+ L+ L +L+I++
Sbjct: 627 LSGSSKLKVIPSGVISSLSQLENLCMANSFTQWEG-EGKSNACLAELKHLSHLTSLDIQI 685

Query: 281 ADAEILPPNFVSVELQRYRIRIGD-ESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG 339
            DA++LP + V   L RYRI +GD  S  E        E  + + L  L+  + L   DG
Sbjct: 686 RDAKLLPKDIVFDNLVRYRIFVGDVWSWREI------FETNKTLKLNKLD--TSLHLVDG 737

Query: 340 TKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGEL 399
              LL+RTE L L  L G  +V+ +L DGEGF +LKHL+V+S  EI +IV S+     +L
Sbjct: 738 IIKLLKRTEDLHLHELCGGTNVLSKL-DGEGFLKLKHLNVESSPEIQYIVNSM-----DL 791

Query: 400 RRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDC 459
               G               F  +  L L+    L+E+  GQ  P   F  L  + V DC
Sbjct: 792 TPSHG--------------AFPVMETLSLNQLINLQEVCRGQ-FPAGSFGCLRKVEVKDC 836

Query: 460 TNMSSAIPANLLRCLNNLVYLEVRNCDSL-EEVLHLEELINADKEHIGPLFPKLFKLRLT 518
             +      ++ RCL+ LV ++V  C+S+ E V    + I  D  ++ PLFP+L  L L 
Sbjct: 837 DGLKFLFSLSVARCLSRLVEIKVTRCESMVEMVSQGRKEIKEDTVNV-PLFPELRHLTLQ 895

Query: 519 DLPKLKRFC 527
           DLPKL  FC
Sbjct: 896 DLPKLSNFC 904

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865073|emb|CAN83232.1| hypothetical protein VITISV_021876 [Vitis vinifera]

 Score =  241 bits (616), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 181/437 (41%), Positives = 252/437 (57%), Gaps = 44/437 (10%)

Query: 112 IQVLPERLQCPCLELLHT--EGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLI 169
           I  LPE L CP L+L     + + ++++ + FF+G + L+VL+FT++H  SLPSSL CL 
Sbjct: 514 IHELPEGLVCPKLKLFICCLKTNSAVKIPNTFFEGMKQLQVLDFTQMHLPSLPSSLQCLA 573

Query: 170 NLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEV 229
           NLQTL L  C+L DI I+ +LKKLEIL L  S I+QLP EI QLT L+LLDLS+   ++V
Sbjct: 574 NLQTLLLYGCKLGDIGIITELKKLEILSLIDSDIEQLPREIAQLTHLRLLDLSDSSTIKV 633

Query: 230 IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPN 289
           I   VIS LSQLE+L M NSF+ WE  EG SNA L EL+ L+ L +L+I++ DA++LP +
Sbjct: 634 IPSGVISSLSQLEDLCMENSFTQWEG-EGKSNACLAELKHLSHLTSLDIQIPDAKLLPKD 692

Query: 290 FVSVELQRYRIRIGDE--SEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRT 347
            V   L RYRI +GD    E+ +       +  R + LK  +  + L   DG   LL+ T
Sbjct: 693 VVFENLVRYRIFVGDVWIWEENY-------KTNRTLKLKKFD--TSLHLVDGISKLLKIT 743

Query: 348 EGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLN 407
           E L L  L G  +V+ +L DGEGF +LKHL+V+S  EI +IV S+     +L    G   
Sbjct: 744 EDLHLRELCGGTNVLSKL-DGEGFFKLKHLNVESSPEIQYIVNSL-----DLTSPHG--- 794

Query: 408 STIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPV-----SFFNNLFDLVVDDCTNM 462
                       F  +  L L+    L+E+ HGQ  PV       F  L  + V+DC  +
Sbjct: 795 -----------AFPVMETLSLNQLINLQEVCHGQ-FPVESSRKQSFGCLRKVEVEDCDGL 842

Query: 463 SSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLE-ELINADKEHIGPLFPKLFKLRLTDLP 521
                 ++ R L+ L  ++V  C S+ E++  E + I  D +++ PLFP+L  L L DLP
Sbjct: 843 KFLFSLSVARGLSQLEEIKVTRCKSMVEMVSQERKEIREDADNV-PLFPELRHLTLEDLP 901

Query: 522 KLKRFCNFTRNIIELPK 538
           KL  FC F  N + LPK
Sbjct: 902 KLSNFC-FEENPV-LPK 916

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147844589|emb|CAN80585.1| hypothetical protein VITISV_039838 [Vitis vinifera]

 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 173/466 (37%), Positives = 260/466 (55%), Gaps = 54/466 (11%)

Query: 115 LPERLQCPCLEL-LHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQT 173
           LP+ L CP L+  L    + S+ V + FF+G +GLKVL+ +R+HF++LPSSL  L NLQT
Sbjct: 458 LPKCLVCPQLKFCLLRRNNPSLNVPNTFFEGMKGLKVLDLSRMHFTTLPSSLDSLANLQT 517

Query: 174 LCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPN 233
           LCLD CRL DIA++G+L KL+IL L  STI+QLP E+ QLT L+LLDL++CW LEVI  N
Sbjct: 518 LCLDRCRLVDIALIGKLTKLQILSLKGSTIQQLPNEMVQLTNLRLLDLNHCWRLEVIPRN 577

Query: 234 VISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE--VADAEILPPNFV 291
           ++S LS+LE LYM +SF+ W  +EG SNA L EL  L++L  L+++  + + ++LP  + 
Sbjct: 578 ILSSLSRLECLYMKSSFTRW-AIEGESNACLSELNHLSRLTILDLDLHIPNIKLLPKEYT 636

Query: 292 SVE-LQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGL 350
            +E L RY I IGD             +  R + L  +++   L   DG   LL++TE L
Sbjct: 637 FLEKLTRYSIFIGDWGWSH-----KYCKTSRTLKLNEVDRS--LYVGDGIVKLLKKTEEL 689

Query: 351 WLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTI 410
            L  L G +S+ +ELD  EGF +LKHLHV +  EI +++ S  +                
Sbjct: 690 VLRKLIGTKSIPYELD--EGFCKLKHLHVSASPEIQYVIDSKDQR--------------- 732

Query: 411 QKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANL 470
               ++   F  +  L L     L+E+  G  +PV FF+NL  L V+ C  +      ++
Sbjct: 733 ---VQQHGAFPSLESLILDELINLEEVCCG-PIPVKFFDNLKTLDVEKCHGLKFLFLLSM 788

Query: 471 LRCLNNLVYLEVRNCDSLEEVLHLE---ELINAD--KEHIGPLFPKLFKLRLTDLPKLKR 525
            R L  L  +E+++C+ +++++  E   E+   D  + ++ P FPKL  L+L DLP+L  
Sbjct: 789 ARGLLQLEKIEIKSCNVIQQIVVCESESEIKEDDHVETNLQP-FPKLRSLKLEDLPELMN 847

Query: 526 FCNFTRNI--------------IELPKLRYLTIENCPDMETFISNS 557
           F  F   +              I +P  RY  +   P++E  +  S
Sbjct: 848 FGYFDSKLEMTSQGTCSQGNLDIHMPFFRY-KVSLSPNLEEIVLKS 892

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143590|emb|CBI22343.3| unnamed protein product [Vitis vinifera]

 Score =  239 bits (611), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 174/427 (40%), Positives = 240/427 (56%), Gaps = 34/427 (7%)

Query: 105 ISLTYGGIQVLPERLQCPCLELL---HTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL 161
           +SL    I  LPE L CP LEL        + ++Q+ ++FF+  + LKVL+ +R+   SL
Sbjct: 508 VSLHDCDIHELPEGLVCPKLELFGCYDVNTNSAVQIPNNFFEEMKQLKVLHLSRMQLPSL 567

Query: 162 PSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDL 221
           P SL CL NL+TLCLD C++ DI I+ +LKKLEIL L  S ++QLP EI QLT L++LDL
Sbjct: 568 PLSLQCLTNLRTLCLDGCKVGDIVIIAKLKKLEILSLMDSDMEQLPREIAQLTHLRMLDL 627

Query: 222 SNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA 281
           S    L+VI  +VIS LSQLE L M NSF+ WE  EG SNA L EL+ L+ L +L+I++ 
Sbjct: 628 SGSSKLKVIPSDVISSLSQLENLCMANSFTQWEG-EGKSNACLAELKHLSHLTSLDIQIP 686

Query: 282 DAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTK 341
           DA++LP + V   L RYRI +GD     +  +    EA   + L   +  + L   DG  
Sbjct: 687 DAKLLPKDIVFDTLVRYRIFVGDVW--SWGGIF---EANNTLKLNKFD--TSLHLVDGIS 739

Query: 342 MLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRR 401
            LL+RTE L L  L G   V+ +L+  EGF +LKHL+V+S  EI +I  S+         
Sbjct: 740 KLLKRTEDLHLRELCGFTHVLSKLNR-EGFLKLKHLNVESSPEIQYIANSM--------- 789

Query: 402 WEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTN 461
              +L ST          F  +  L L+    L+E+ HGQ  P   F  L  + V+DC  
Sbjct: 790 ---DLTSTHGV-------FPVMETLSLNQLINLQEVCHGQ-FPAGSFGCLRKVEVEDCDG 838

Query: 462 MSSAIPANLLRCLNNLVYLEVRNCDSL-EEVLHLEELINADKEHIGPLFPKLFKLRLTDL 520
           +      ++ R L+ LV ++V  C S+ E V    + I  D  ++ PLFP+L  L L DL
Sbjct: 839 LKFLFSLSVARGLSRLVEIKVTRCKSMVEMVSQGRKEIKEDTVNV-PLFPELRHLTLQDL 897

Query: 521 PKLKRFC 527
           PKL  FC
Sbjct: 898 PKLSNFC 904

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125154|ref|XP_002319513.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222857889|gb|EEE95436.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  239 bits (610), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 176/463 (38%), Positives = 255/463 (55%), Gaps = 66/463 (14%)

Query: 104 AISLTYGGIQVLPERLQCPCLE--LLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL 161
           AISL    I  LPE L  P  E  +L+ E D S+++ D  FKGT+ L++++ T +   +L
Sbjct: 503 AISLPRCKIPGLPEVLNFPKAESFILYNE-DPSLKIPDSLFKGTKTLQLVDMTAVQLPTL 561

Query: 162 PSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDL 221
           PSSL  L  LQTLCLD C LKDIA++G+LK L++L L  S I +LP EIGQLTRLQLLDL
Sbjct: 562 PSSLQFLEKLQTLCLDSCGLKDIAMIGELKMLKVLSLIDSNIVRLPREIGQLTRLQLLDL 621

Query: 222 SNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG----GSNASLVELERLTKLATLE 277
           SN   LE+I PNV+S L+QLE+LYM NSF  W ++EG     +NASL EL+ L  L+TL 
Sbjct: 622 SNNPRLEMIPPNVLSCLTQLEDLYMENSFLQW-RIEGLDSQRNNASLAELKYLPNLSTLH 680

Query: 278 IEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEN 337
           + + D  ILP +F S +L+R++I IG+  +        K E    M LK     + +Q  
Sbjct: 681 LHITDPMILPRDFFSKKLERFKILIGEGWD-----WSRKRETSTTMKLK---ISASIQSE 732

Query: 338 DGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEG 397
           +G ++LL+RTE L L+ L+GV+SV +EL DG+GFPRLKHLH+++  EI +IV S      
Sbjct: 733 EGIQLLLKRTEDLHLDGLKGVKSVSYEL-DGQGFPRLKHLHIQNSLEIRYIVDST----- 786

Query: 398 ELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVD 457
                               I F  +  L L +  +L++I + Q +  S F+NL  L V+
Sbjct: 787 ---------------MLSPSIAFPLLESLSLDNLNKLEKICNSQPVAES-FSNLRILKVE 830

Query: 458 DCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRL 517
            C  + +    ++ R L  L ++ + +C  +E ++  E    AD++              
Sbjct: 831 SCPMLKNLFSLHMERGLLQLEHISIIDCKIMEVIVAEESGGQADEDE------------- 877

Query: 518 TDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSV 560
                           I+L +LR LT+E  P+  +  S S + 
Sbjct: 878 ---------------AIKLTQLRTLTLEYLPEFTSVSSKSNAA 905

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488108|ref|XP_003633701.1| PREDICTED: disease resistance protein At4g27190-like [Vitis vinifera]

 Score =  238 bits (608), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 173/427 (40%), Positives = 238/427 (55%), Gaps = 34/427 (7%)

Query: 105 ISLTYGGIQVLPERLQCPCLELL---HTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL 161
           +SL    I+ LPE L CP LEL        + ++Q+ ++FF+  + LKVL+ +R+   SL
Sbjct: 512 VSLHDCDIRELPEGLACPKLELFGCYDVNTNSAVQIPNNFFEEMKQLKVLDLSRMQLPSL 571

Query: 162 PSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDL 221
           P S  C  NL+TLCLD C L +I I+ +LKKLEIL L  S I++LP EI QLT L+L DL
Sbjct: 572 PLSCHCRTNLRTLCLDGCNLGEIVIIAELKKLEILSLTYSDIEKLPREIAQLTHLRLFDL 631

Query: 222 SNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA 281
              + L+VI P+VIS LSQLE+L M NSF+ WE  EG SNA L EL+ L+ L +L+I++ 
Sbjct: 632 KGSYKLKVIPPDVISSLSQLEDLCMENSFTQWEG-EGKSNACLAELKHLSHLTSLDIQIP 690

Query: 282 DAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTK 341
           DA++LP + V   L RYRI +GD            SEA + + L   +  + L   DG  
Sbjct: 691 DAKLLPKDIVFDTLVRYRIFVGDVWS-----WGGISEANKTLQLNKFD--TSLHLVDGII 743

Query: 342 MLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRR 401
            LL+RTE L L  L G  +V+ +L DGEGF +LKHL+V+S  EI +IV S+     +L  
Sbjct: 744 KLLKRTEDLHLRELCGGTNVLSKL-DGEGFLKLKHLNVESSPEIQYIVNSM-----DLTP 797

Query: 402 WEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTN 461
             G               F  +  L L+    L+E+  GQ  P   F  L  + V+DC  
Sbjct: 798 SHG--------------AFPVMETLSLNQLINLQEVCRGQ-FPAGSFGCLRKVEVEDCDG 842

Query: 462 MSSAIPANLLRCLNNLVYLEVRNCDSL-EEVLHLEELINADKEHIGPLFPKLFKLRLTDL 520
           +      ++ R L+ L   +V  C S+ E V    + I  D  ++ PLFP+L  L L DL
Sbjct: 843 LKFLFSLSVARGLSRLEETKVTRCKSMVEMVSQGRKEIKEDAVNV-PLFPELRSLTLEDL 901

Query: 521 PKLKRFC 527
           PKL  FC
Sbjct: 902 PKLSNFC 908

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574526|ref|XP_002528174.1| Disease resistance protein RFL1, putative [Ricinus communis] gi|223532386|gb|EEF34181.1| Disease resistance protein RFL1, putative [Ricinus communis]

 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 198/527 (37%), Positives = 285/527 (54%), Gaps = 51/527 (9%)

Query: 38  QRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLF--EKRMFNIPNVADLEKKME 95
           +RR   +++  K   L +D        I  L +  A+ +   E+++F I N   LE   +
Sbjct: 427 RRRVHAMISELKSSCLLLDGEMNGFVKIHDLIQDFAVSIAYREQQVFTINNYIRLEVWPD 486

Query: 96  ETIRKDPIAISLTYGGIQVLPERLQCPCLE--LLHTEGDGSMQVSDHFFKGTEGLKVLNF 153
           E   K    ISL    +  LPE L+ P LE  LL TE + S+++   FF+G   LKVL+F
Sbjct: 487 EDALKSCTRISLPCLNVVKLPEVLESPNLEFLLLSTE-EPSLRIPGSFFQGIPILKVLDF 545

Query: 154 TRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQL 213
             + FSSLP SLGCL +L+TLCLD+C L DIAI+G+LKKLEIL  A S I +LP EIG+L
Sbjct: 546 CGMSFSSLPPSLGCLEHLRTLCLDHCLLHDIAIIGELKKLEILTFAHSDIVELPREIGEL 605

Query: 214 TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG---GSNASLVELERL 270
           +RL+LLDLS+C  L V   NV+S+L  LEELYM NSF  W K+EG    SNASL EL  L
Sbjct: 606 SRLKLLDLSHCSKLNVFPANVLSRLCLLEELYMANSFVRW-KIEGLMNQSNASLDELVLL 664

Query: 271 TKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEK 330
           + L +LEI++ DA ILP +  + +LQRY+I IGDE +          E  R++ LK    
Sbjct: 665 SHLTSLEIQILDARILPRDLFTKKLQRYKILIGDEWDWNG-----HDETSRVLKLK--LN 717

Query: 331 VSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVG 390
            SI  E +     L+ T+ L L    GV S+++ L + EGFP+LK L V++C EI  +V 
Sbjct: 718 TSIHSEYE-VNQFLEGTDDLSLADARGVNSILYNL-NSEGFPQLKRLIVQNCPEIHCLV- 774

Query: 391 SVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNN 450
                         N + ++       + F  +  L L +   L++  HG+ +  S F+ 
Sbjct: 775 --------------NASESVPT-----VAFPLLKSLLLENLMNLEKFCHGELVGGS-FSE 814

Query: 451 LFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFP 510
           L  + V  C  + + +  +++R L  L  +EV +C ++ E+   E   ++D E       
Sbjct: 815 LRSIKVRSCNELKNLLSFSMVRFLMQLQEMEVIDCRNVMEIFKYEG-ADSDIEDKAAALT 873

Query: 511 KLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNS 557
           +L  L L  LPKL  FC+     I+ P    LTI+  P +E  +S S
Sbjct: 874 RLRSLTLERLPKLNSFCS-----IKEP----LTID--PGLEEIVSES 909

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	606
TAIR|locus:2136447	985	AT4G27190 [Arabidopsis thalian	0.452	0.278	0.278	1.4e-17
TAIR|locus:2131689	919	AT4G27220 [Arabidopsis thalian	0.638	0.421	0.240	1.7e-12
DICTYBASE|DDB_G0282725	1775	vilD "villin-like protein D" [	0.437	0.149	0.268	2.4e-11
TAIR|locus:2005517	909	RPS2 "RESISTANT TO P. SYRINGAE	0.529	0.353	0.244	2.6e-08
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.206	0.090	0.338	1.9e-09
TAIR|locus:2008510	967	AT1G61190 "AT1G61190" [Arabido	0.272	0.170	0.286	2.2e-09
TAIR|locus:2205804	1556	AT1G27180 [Arabidopsis thalian	0.237	0.092	0.340	3.6e-09
ZFIN|ZDB-GENE-040718-372	238	lrrc57 "leucine rich repeat co	0.330	0.840	0.255	1.6e-07
TAIR|locus:2117149	1201	AT4G19050 [Arabidopsis thalian	0.323	0.163	0.248	1.6e-07
TAIR|locus:2132741	892	AT4G10780 [Arabidopsis thalian	0.227	0.154	0.273	2.5e-07

TAIR|locus:2136447 AT4G27190 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 1.4e-17, Sum P(3) = 1.4e-17
 Identities = 84/302 (27%), Positives = 150/302 (49%)

Query:    96 ETIRKDPIA-----ISLTYGGIQVLPERLQCPCLE--LLHTEGDGSM-QVSDHFFKGTEG 147
             + IR+D +A     +SL    ++ LP+ ++  C++  +L  +G+  + +V   F +    
Sbjct:   492 QDIRQDKLAPSLRRVSLMNNKLESLPDLVEEFCVKTSVLLLQGNFLLKEVPIGFLQAFPT 551

Query:   148 LKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYC-RLKDIAIVGQLKKLEILILARSTIKQ 205
             L++LN +     S PS SL  L +L +L L  C +L  +  +  L KLE+L L  + I +
Sbjct:   552 LRILNLSGTRIKSFPSCSLLRLFSLHSLFLRDCFKLVKLPSLETLAKLELLDLCGTHILE 611

Query:   206 LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSN---A 262
              P  + +L R + LDLS    LE I   V+S+LS LE L M +S   W  V+G +    A
Sbjct:   612 FPRGLEELKRFRHLDLSRTLHLESIPARVVSRLSSLETLDMTSSHYRWS-VQGETQKGQA 670

Query:   263 SLVELERLTKLATLEIEVADAEIL--PPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAP 320
             ++ E+  L +L  L I +  +  L    N     L+++++ +G         L  + +  
Sbjct:   671 TVEEIGCLQRLQVLSIRLHSSPFLLNKRNTWIKRLKKFQLVVGSRYI-----LRTRHDKR 725

Query:   321 RLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHEL-DDGEGFPRLKHLHV 379
             RL     +  +++ Q + G   LL  T  L L   +G+++++ +L  D +GF  LK L +
Sbjct:   726 RLT----ISHLNVSQVSIG--WLLAYTTSLALNHCQGIEAMMKKLVSDNKGFKNLKSLTI 779

Query:   380 KS 381
             ++
Sbjct:   780 EN 781

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2131689 AT4G27220 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.7e-12, Sum P(2) = 1.7e-12
 Identities = 102/424 (24%), Positives = 185/424 (43%)

Query:   105 ISLTYGGIQVLPERL--QCPCLELLHTEGDGSM-QVSDHFFKGTEGLKVLNFTRIHFSSL 161
             +SL    ++ LP  +      L LL  +G+  + +V + F +    L++L+ + +   +L
Sbjct:   475 VSLMANKLERLPNNVIEGVETLVLL-LQGNSHVKEVPNGFLQAFPNLRILDLSGVRIRTL 533

Query:   162 PSSLGCLINLQTLCLDYCR-LKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLD 220
             P S   L +L++L L  C+ L+++  +  L KL+ L L  S I++LP  +  L+ L+ + 
Sbjct:   534 PDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGLEALSSLRYIC 593

Query:   221 LSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW----EKVEGGSNASLVELERLTKLATL 276
             +SN + L+ I    I +LS LE L M  S   W    E+ EG   A+L E+  L  L  L
Sbjct:   594 VSNTYQLQSIPAGTILQLSSLEVLDMAGSAYSWGIKGEEREG--QATLDEVTCLPHLQFL 651

Query:   277 EIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQ- 335
              I++ D  +L  +F S E      R+  + +  F P  ++S +P     +G   +S +  
Sbjct:   652 AIKLLD--VL--SF-SYEFDSLTKRL-TKFQFLFSP--IRSVSPPGTG-EGCLAISDVNV 702

Query:   336 ENDGTKMLLQRTEGLWLETLEGVQSVVHEL--DDGEGFPRLKHLHVKSCSEILHIVGSVX 393
              N     LLQ    L L   EG+  +   L       F  +K L +     +    G   
Sbjct:   703 SNASIGWLLQHVTSLDLNYCEGLNGMFENLVTKSKSSFVAMKALSIHYFPSLSLASGCES 762

Query:   394 XXXXXXXXXXXNLNSTIQKCYEEMIGF-----RDIIHLQLSHFPRLKEIWHGQALPVSFF 448
                        +L++   +   E+ GF     + +  LQ+S   +LK ++  Q L     
Sbjct:   763 QLDLFPNLEELSLDNVNLESIGELNGFLGMRLQKLKLLQVSGCRQLKRLFSDQIL-AGTL 821

Query:   449 NNLFDLVVDDCTNMS-----SAIPANLLR--CLNNLVYLEVRNCDSLEEVLHLEELINAD 501
              NL ++ V  C  +      S++P +      L  L  ++++    L  + + + ++   
Sbjct:   822 PNLQEIKVVSCLRLEELFNFSSVPVDFCAESLLPKLTVIKLKYLPQLRSLCN-DRVVLES 880

Query:   502 KEHI 505
              EH+
Sbjct:   881 LEHL 884

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

DICTYBASE|DDB_G0282725 vilD "villin-like protein D" [Dictyostelium discoideum (taxid:44689)]

 Score = 195 (73.7 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 78/290 (26%), Positives = 135/290 (46%)

Query:   105 ISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS 163
             + ++Y  I ++ + L QC  LE L+   +    +   F    + LKVLN +    S LP+
Sbjct:    71 LDVSYNAISIISDDLYQCKLLEKLNLSFNQINNIQSSFIAQLKLLKVLNLSNNLLSQLPN 130

Query:   164 SLGCLINLQTLCLDYCRLKDIA-IVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLS 222
              +G L NL TL L + +L+ +   +G+L  L+ LI+  + ++ LP EIG+L  LQ LD +
Sbjct:   131 EIGFLNNLTTLNLSFNKLQQLPKTIGRLSSLQKLIINNNCLQLLPNEIGELLELQQLDCA 190

Query:   223 NCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVAD 282
                L   I P  I     L +LY+ N+    + +E      + EL  L KL  L +    
Sbjct:   191 ENELR--ILPTTIGNCKSLTKLYLDNN----DFLE-----MIPELGNLMKLKELNLRSNQ 239

Query:   283 AEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTK 341
                LP +F   + LQ   +   D+++ E     V ++ PRL+     +K  + +    T 
Sbjct:   240 LVDLPSSFSKLINLQILDL---DDNQWEHTDYTV-NDIPRLLQYLRSKKDVVNKSRKSTS 295

Query:   342 MLLQRTEGLWLETLEGVQSV-VHELDDGEGFP----RLKHLHVKSCSEIL 386
                +RT  L  + +E  + + ++ + D   F     + K L +K  + I+
Sbjct:   296 KEYRRT--LTRQKIEDKKRLSINNVFDNSSFQVVEYKKKLLQLKGLNRII 343

GO:0007010 "cytoskeleton organization" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

TAIR|locus:2005517 RPS2 "RESISTANT TO P. SYRINGAE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
 Identities = 85/347 (24%), Positives = 142/347 (40%)

Query:   171 LQTLCLDYCRLKDIAI-VGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEV 229
             L+ L L +  + +I + +  L +L  L ++ + I  LP E+G L +L+ LDL     L+ 
Sbjct:   560 LRVLDLSFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQT 619

Query:   230 IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNAS----LVELERLTKLATLEIEVADAEI 285
             I  + I  LS+LE L +  S++GWE    G + +      +LE L  L TL I V   E 
Sbjct:   620 IPRDAICWLSKLEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLET 679

Query:   286 LPPNFVSVELQRYRIRIGDESEDE---FD-PLLVK-SEAPRLMMLKGLEKVSIL-QENDG 339
             L   F    L ++   +  E  +E   F+ P L       R + +K    +  L    D 
Sbjct:   680 LKTLFEFGALHKHIQHLHVEECNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADF 739

Query:   340 TKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHI--VGSVXXXXX 397
                 L   E L L +L  +  V       +    ++ +++  C+++ ++  V  +     
Sbjct:   740 ENDWLPSLEVLTLHSLHNLTRVWGNSVSQDCLRNIRCINISHCNKLKNVSWVQKLPKLEV 799

Query:   398 XXXXXXXNLNSTIQK----CYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSF-FNNLF 452
                     +   I +      E+   F  +  L+    P L  I     LP  F F  + 
Sbjct:   800 IELFDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPELNSI-----LPSRFSFQKVE 854

Query:   453 DLVVDDCTNMSSAIPANLLRCLNNL--VYLEVRNCDSLEEVLHLEEL 497
              LV+ +C  +   +P    R   NL  VY E +   +LE+    EEL
Sbjct:   855 TLVITNCPRVKK-LPFQERRTQMNLPTVYCEEKWWKALEKDQPNEEL 900

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=ISS;TAS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
 Identities = 43/127 (33%), Positives = 63/127 (49%)

Query:   124 LELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD 183
             LE L   G   + V          LK L        +LP S+  L NL+ L L  C++++
Sbjct:   743 LEKLFLSGCSDLSVLPENIGAMTSLKELLLDGTAIKNLPESINRLQNLEILSLRGCKIQE 802

Query:   184 IAI-VGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE 242
             + + +G LK LE L L  + +K LP  IG L  LQ L L  C  L  I P+ I++L  L+
Sbjct:   803 LPLCIGTLKSLEKLYLDDTALKNLPSSIGDLKNLQDLHLVRCTSLSKI-PDSINELKSLK 861

Query:   243 ELYMGNS 249
             +L++  S
Sbjct:   862 KLFINGS 868

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2008510 AT1G61190 "AT1G61190" [Arabidopsis thaliana (taxid:3702)]

 Score = 106 (42.4 bits), Expect = 2.2e-09, Sum P(3) = 2.2e-09
 Identities = 51/178 (28%), Positives = 82/178 (46%)

Query:   105 ISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRI-HFSSLPS 163
             +SL    I+ +    +C  L  L  + +    +S  F +  + L VL+ +    F+ LP 
Sbjct:   520 MSLMMNEIEEITCESKCSELTTLFLQSNQLKNLSGEFIRYMQKLVVLDLSHNPDFNELPE 579

Query:   164 SLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSN 223
              +  L++LQ L L + R++ +  VG LK+L+ LI       +    I  ++RL    LS 
Sbjct:   580 QISGLVSLQYLDLSWTRIEQLP-VG-LKELKKLIFLNLCFTERLCSISGISRL----LSL 633

Query:   224 CWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELE-RLTKL-ATLEIE 279
              WL  +   NV    S L+EL    +       E   +A L+ L+ RL KL + L IE
Sbjct:   634 RWL-SLRESNVHGDASVLKELQQLENLQDLRITE---SAELISLDQRLAKLISVLRIE 687

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205804 AT1G27180 [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
 Identities = 50/147 (34%), Positives = 69/147 (46%)

Query:   123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCR-L 181
             CLE     G  ++ V          LK L       S+LP S+  L  L+ L L  CR +
Sbjct:   915 CLEKFFLSGCSNLSVLPENIGSMPCLKELLLDGTAISNLPYSIFRLQKLEKLSLMGCRSI 974

Query:   182 KDI-AIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQ 240
             +++ + VG L  LE L L  + ++ LP  IG L  LQ L L  C  L  I P  I+KL  
Sbjct:   975 EELPSCVGYLTSLEDLYLDDTALRNLPSSIGDLKNLQKLHLMRCTSLSTI-PETINKLMS 1033

Query:   241 LEELYMGNSFSGWEKVEGGSNASLVEL 267
             L+EL++  S      +E GS   L +L
Sbjct:  1034 LKELFINGSAVEELPIETGSLLCLTDL 1060

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

ZFIN|ZDB-GENE-040718-372 lrrc57 "leucine rich repeat containing 57" [Danio rerio (taxid:7955)]

 Score = 145 (56.1 bits), Expect = 1.6e-07, P = 1.6e-07
 Identities = 54/211 (25%), Positives = 102/211 (48%)

Query:    96 ETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTE-GDGSMQVSDHFFKGTEGLKVLNFT 154
             ET +K  +   LT  G+   PE LQ     L   +  +  ++    F    + LK    +
Sbjct:    11 ETSQKTGV-FQLTGKGLTEFPEDLQKLTANLRTVDLSNNKIEELPAFIGSFQHLKSFTIS 69

Query:   155 RIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILILARSTIKQLPLEIGQL 213
                 +SLP+ +G L  L+TL L+  +LK + + +GQLK L  L L+ +  K+ P  +G L
Sbjct:    70 CNKLTSLPNDIGKLKKLETLILNGNQLKQLPSSIGQLKSLRTLSLSGNQFKEFPSGLGTL 129

Query:   214 TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG-WEKVEGGSNASLVELER-LT 271
              +L +LDLS   +   + P  +++L  +E     N  S   ++V       ++ LE    
Sbjct:   130 RQLDVLDLSKNQIR--VVPAEVAELQAIEINLNQNQISSVTQEVSRTPRLKVLRLEENCL 187

Query:   272 KLATLEIEV-ADAEILPPNFVSVELQRYRIR 301
             +L+++ + +  D+++   + +SVE   + ++
Sbjct:   188 ELSSIPLSILTDSQV---SLLSVEGNLFEVK 215

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2117149 AT4G19050 [Arabidopsis thaliana (taxid:3702)]

 Score = 118 (46.6 bits), Expect = 1.6e-07, Sum P(2) = 1.6e-07
 Identities = 53/213 (24%), Positives = 100/213 (46%)

Query:    68 LPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELL 127
             L  K+ L++ +    ++P +AD    + + +  + + +      I+ LP   +   LE+ 
Sbjct:   675 LEEKKELRILDMSKTSLPELADT---IADVVNLNKLLLR-NCSLIEELPSIEKLTHLEVF 730

Query:   128 HTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC-RLKDIAI 186
                G   ++  +  F     L  +N +  + S LP  +  L NL+ L +  C +LK +  
Sbjct:   731 DVSGCIKLKNINGSFGEMSYLHEVNLSETNLSELPDKISELSNLKELIIRKCSKLKTLPN 790

Query:   187 VGQLKKLEILILARST-IKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELY 245
             + +L  LEI  ++  T ++ +      L+ L  ++LS   L E+  PN IS+LS L+EL 
Sbjct:   791 LEKLTNLEIFDVSGCTELETIEGSFENLSCLHKVNLSETNLGEL--PNKISELSNLKELI 848

Query:   246 MGNSFSGWEKVEGGSNASLVELERLTKLATLEI 278
             + N      K++     +L  LE+LT L   ++
Sbjct:   849 LRNC----SKLK-----ALPNLEKLTHLVIFDV 872

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2132741 AT4G10780 [Arabidopsis thaliana (taxid:3702)]

 Score = 95 (38.5 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
 Identities = 40/146 (27%), Positives = 71/146 (48%)

Query:   105 ISLTYGGIQVLPERLQCPCLELLHTEGDGSM-QVSDHFFKGTEGLKVLNFTRIH-FSSLP 162
             +SL   GI+ +    +CP L  L  + + S+  +S  FF+    L VL+ +  H    LP
Sbjct:   519 LSLMNNGIEEISGSPECPELTTLFLQENKSLVHISGEFFRHMRKLVVLDLSENHQLDGLP 578

Query:   163 SSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILI-LARSTIKQLP--LEIGQLTRLQLL 219
               +  L+ L+ L L +  ++ +     L+ L+ LI L    +++L     I +L+ L+ L
Sbjct:   579 EQISELVALRYLDLSHTNIEGLPAC--LQDLKTLIHLNLECMRRLGSIAGISKLSSLRTL 636

Query:   220 DLSNC-WLLEVIAPNVISKLSQLEEL 244
              L N   +L+V++   +  L  LE L
Sbjct:   637 GLRNSNIMLDVMSVKELHLLEHLEIL 662

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	606
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 37/105 (35%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 145 TEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILILARSTI 203
              LK L+ +     SLPS L  L NL+ L L +  L D+  ++  L  L  L L+ + I
Sbjct: 139 KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198

Query: 204 KQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
             LP EI  L+ L+ LDLSN  ++E+   + +S L  L  L + N
Sbjct: 199 SDLPPEIELLSALEELDLSNNSIIEL--LSSLSNLKNLSGLELSN 241

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 5e-04
 Identities = 35/123 (28%), Positives = 55/123 (44%), Gaps = 9/123 (7%)

Query: 129 TEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVG 188
           +  DGS  + +     +     L+       S  S L  L NL +L LD   + DI  + 
Sbjct: 81  SSLDGSENLLNLLPLPS-----LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI 135

Query: 189 QL--KKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM 246
            L    L+ L L+ + I+ LP  +  L  L+ LDLS   L ++  P ++S LS L  L +
Sbjct: 136 GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDL--PKLLSNLSNLNNLDL 193

Query: 247 GNS 249
             +
Sbjct: 194 SGN 196

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	606
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.97
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.86
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.85
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.77
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.63
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.57
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.56
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.55
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.46
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.29
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.23
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.98
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.96
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.93
KOG4341	483	consensus F-box protein containing LRR [General fu	98.89
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.84
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.82
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.8
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.76
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.68
PLN03150	623	hypothetical protein; Provisional	98.54
KOG4341	483	consensus F-box protein containing LRR [General fu	98.48
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.38
PLN03150	623	hypothetical protein; Provisional	98.37
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.32
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.3
PRK15386	426	type III secretion protein GogB; Provisional	98.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.25
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	98.22
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.16
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.12
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.1
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.98
PRK15386	426	type III secretion protein GogB; Provisional	97.97
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.94
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.85
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.85
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.79
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.75
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.58
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.34
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.33
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.12
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.97
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.9
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.83
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.59
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.56
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.53
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.35
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.27
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.83
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.55
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.16
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	95.15
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.14
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.19
smart00370	26	LRR Leucine-rich repeats, outliers.	88.94
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.94
KOG0473	326	consensus Leucine-rich repeat protein [Function un	88.7
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	86.64
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.09
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	82.27
smart00370	26	LRR Leucine-rich repeats, outliers.	82.27

>PLN03210 Resistant to P

Probab=100.00  E-value=3.3e-34  Score=329.70  Aligned_cols=471  Identities=19%  Similarity=0.241  Sum_probs=329.2

Q ss_pred             hhhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccCCCCChHhHHHHhhhhhcC
Q 007371            4 VGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFN   83 (606)
Q Consensus         4 ~~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~   83 (606)
                      ..+..+.||||+..+|+.+.....+        .+.||+||||||+.+| +..++....|+++.+++++||+||+++||.
T Consensus       296 krvLLVLDdv~~~~~l~~L~~~~~~--------~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~~l~~~ea~~LF~~~Af~  366 (1153)
T PLN03210        296 RKVLIFIDDLDDQDVLDALAGQTQW--------FGSGSRIIVITKDKHF-LRAHGIDHIYEVCLPSNELALEMFCRSAFK  366 (1153)
T ss_pred             CeEEEEEeCCCCHHHHHHHHhhCcc--------CCCCcEEEEEeCcHHH-HHhcCCCeEEEecCCCHHHHHHHHHHHhcC
Confidence            3455678999999999999887788        8899999999999999 566777789999999999999999999985


Q ss_pred             C--CChhhH-----------------------------------------------------------------------
Q 007371           84 I--PNVADL-----------------------------------------------------------------------   90 (606)
Q Consensus        84 ~--~~~~~l-----------------------------------------------------------------------   90 (606)
                      .  |... +                                                                       
T Consensus       367 ~~~~~~~-~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~i  445 (1153)
T PLN03210        367 KNSPPDG-FMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHI  445 (1153)
T ss_pred             CCCCcHH-HHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhhee
Confidence            3  2111 0                                                                       


Q ss_pred             -----------------------------------------HHHHhhhcc------------------------------
Q 007371           91 -----------------------------------------EKKMEETIR------------------------------   99 (606)
Q Consensus        91 -----------------------------------------~~~~~di~~------------------------------   99 (606)
                                                               ...|||+++                              
T Consensus       446 a~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl  525 (1153)
T PLN03210        446 ACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVL  525 (1153)
T ss_pred             hhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHH
Confidence                                                     113333333                              


Q ss_pred             ------CCCeEEEecCCCCcc--cCCc--ccccccceeeccccc-------ccccchhHhcCCCCCcEEEeeCCcCccCC
Q 007371          100 ------KDPIAISLTYGGIQV--LPER--LQCPCLELLHTEGDG-------SMQVSDHFFKGTEGLKVLNFTRIHFSSLP  162 (606)
Q Consensus       100 ------~~l~~L~l~~~~~~~--l~~~--~~l~~L~~L~~~~~~-------~~~~~~~~~~~l~~L~~L~l~~~~l~~lp  162 (606)
                            ..++.+.+....+..  +...  ..+++|+.|.++.+.       ...+|.++..-..+||.|++.++.+..+|
T Consensus       526 ~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP  605 (1153)
T PLN03210        526 EDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMP  605 (1153)
T ss_pred             HhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCC
Confidence                  112222222222211  1111  156778877765432       12355554322356888998888888888


Q ss_pred             ccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCC-cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCC
Q 007371          163 SSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARS-TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQ  240 (606)
Q Consensus       163 ~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~  240 (606)
                      ..+ ...+|+.|++.++.+.. +..+..+++|++|+++++ .+..+| .++.+++|++|++.+|.....+|.. ++++++
T Consensus       606 ~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~  682 (1153)
T PLN03210        606 SNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSS-IQYLNK  682 (1153)
T ss_pred             CcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchh-hhccCC
Confidence            877 56888889998888877 677788888999998887 466776 4778888999999888888888887 888888


Q ss_pred             CCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCC-CCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCC
Q 007371          241 LEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADA-EILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEA  319 (606)
Q Consensus       241 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  319 (606)
                      |+.|++++|......+        ..+ ++++|+.|++++|.. ..+|..  ..+|+.|++....  ...++..+ .+++
T Consensus       683 L~~L~L~~c~~L~~Lp--------~~i-~l~sL~~L~Lsgc~~L~~~p~~--~~nL~~L~L~~n~--i~~lP~~~-~l~~  748 (1153)
T PLN03210        683 LEDLDMSRCENLEILP--------TGI-NLKSLYRLNLSGCSRLKSFPDI--STNISWLDLDETA--IEEFPSNL-RLEN  748 (1153)
T ss_pred             CCEEeCCCCCCcCccC--------CcC-CCCCCCEEeCCCCCCccccccc--cCCcCeeecCCCc--cccccccc-cccc
Confidence            9999888875444333        222 677888888887653 444432  3577888774332  22333322 4667


Q ss_pred             CcEEEecCcccccc----cccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccc
Q 007371          320 PRLMMLKGLEKVSI----LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRRE  395 (606)
Q Consensus       320 L~~L~L~~~~~~~~----~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~  395 (606)
                      |+.|.+.++.....    .+.+......+++|+.|++++|.....+|..+.   ++++|+.|+|++|+.++.+..     
T Consensus       749 L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~---~L~~L~~L~Ls~C~~L~~LP~-----  820 (1153)
T PLN03210        749 LDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ---NLHKLEHLEIENCINLETLPT-----  820 (1153)
T ss_pred             cccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhh---CCCCCCEEECCCCCCcCeeCC-----
Confidence            77777766432110    111111222357899999999998888998776   899999999999998887621     


Q ss_pred             cccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcC
Q 007371          396 EGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLN  475 (606)
Q Consensus       396 ~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~  475 (606)
                          ...+++|+.                 |.+++|..+..++..       .++|+.|++.+ +.++.+ |. .+..++
T Consensus       821 ----~~~L~sL~~-----------------L~Ls~c~~L~~~p~~-------~~nL~~L~Ls~-n~i~~i-P~-si~~l~  869 (1153)
T PLN03210        821 ----GINLESLES-----------------LDLSGCSRLRTFPDI-------STNISDLNLSR-TGIEEV-PW-WIEKFS  869 (1153)
T ss_pred             ----CCCccccCE-----------------EECCCCCcccccccc-------ccccCEeECCC-CCCccC-hH-HHhcCC
Confidence                124667777                 999999988876532       36899999988 578877 54 367899


Q ss_pred             CCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccc----------cccccCCCcceEeec
Q 007371          476 NLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFT----------RNIIELPKLRYLTIE  545 (606)
Q Consensus       476 ~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~----------~~~~~~~~L~~L~i~  545 (606)
                      +|+.|++.+|++++.++.           ....+++|+.+++++|++|+.++...          .....+|+...+.+.
T Consensus       870 ~L~~L~L~~C~~L~~l~~-----------~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~  938 (1153)
T PLN03210        870 NLSFLDMNGCNNLQRVSL-----------NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFI  938 (1153)
T ss_pred             CCCEEECCCCCCcCccCc-----------ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccc
Confidence            999999999999988764           23468899999999999998765410          001234555667788


Q ss_pred             cCCCCc
Q 007371          546 NCPDME  551 (606)
Q Consensus       546 ~Cp~L~  551 (606)
                      +|.+|.
T Consensus       939 nC~~L~  944 (1153)
T PLN03210        939 NCFNLD  944 (1153)
T ss_pred             cccCCC
Confidence            888875

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=9.2e-31  Score=301.40  Aligned_cols=454  Identities=18%  Similarity=0.162  Sum_probs=266.7

Q ss_pred             CCCCChHhHHHHhhhhhc-CCCCh--hhHHHHHhhhccCCCeEEEecCCCCc-ccCCcccccccceeeccccccc-ccch
Q 007371           65 IDALPRKEALQLFEKRMF-NIPNV--ADLEKKMEETIRKDPIAISLTYGGIQ-VLPERLQCPCLELLHTEGDGSM-QVSD  139 (606)
Q Consensus        65 l~~L~~~~~~~Lf~~~~~-~~~~~--~~l~~~~~di~~~~l~~L~l~~~~~~-~l~~~~~l~~L~~L~~~~~~~~-~~~~  139 (606)
                      +..++..+.++|..+... ..|..  ..+         .++++|++++|.+. .+| ...+++|++|++++|.+. .+|.
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l---------~~L~~L~Ls~n~l~~~~p-~~~l~~L~~L~Ls~n~~~~~~p~  158 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTS---------SSLRYLNLSNNNFTGSIP-RGSIPNLETLDLSNNMLSGEIPN  158 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccC---------CCCCEEECcCCccccccC-ccccCCCCEEECcCCcccccCCh
Confidence            445566666666665432 33421  123         67888888888874 343 345778888888877765 4555


Q ss_pred             hHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCCC
Q 007371          140 HFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLTR  215 (606)
Q Consensus       140 ~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~  215 (606)
                      . +.++++|++|++++|.+.. +|..++++++|++|++++|.+..  |..++++++|++|++++|.+. .+|..++++++
T Consensus       159 ~-~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  237 (968)
T PLN00113        159 D-IGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS  237 (968)
T ss_pred             H-HhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence            5 4778888888888887765 78888888888888888888765  677888888888888888776 67778888888


Q ss_pred             CCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC-CCCccccc-c
Q 007371          216 LQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE-ILPPNFVS-V  293 (606)
Q Consensus       216 L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~  293 (606)
                      |++|++++|...+.+|.. ++++++|++|++++|.+....+        ..+.++++|++|++++|.+. .+|..+.. +
T Consensus       238 L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~~p--------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~  308 (968)
T PLN00113        238 LNHLDLVYNNLTGPIPSS-LGNLKNLQYLFLYQNKLSGPIP--------PSIFSLQKLISLDLSDNSLSGEIPELVIQLQ  308 (968)
T ss_pred             CCEEECcCceeccccChh-HhCCCCCCEEECcCCeeeccCc--------hhHhhccCcCEEECcCCeeccCCChhHcCCC
Confidence            888888887777777776 7888888888888877655443        56667777777777776653 45554433 6


Q ss_pred             CCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCccccccccc-------
Q 007371          294 ELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELD-------  366 (606)
Q Consensus       294 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-------  366 (606)
                      +|+.|++. ++......+..+..+++|+.|++++|.+.+.++  .+++. +++|+.|++++|.....+|..+.       
T Consensus       309 ~L~~L~l~-~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~-~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~  384 (968)
T PLN00113        309 NLEILHLF-SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIP--KNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFK  384 (968)
T ss_pred             CCcEEECC-CCccCCcCChhHhcCCCCCEEECcCCCCcCcCC--hHHhC-CCCCcEEECCCCeeEeeCChhHhCcCCCCE
Confidence            67776662 233333344455666666666666665543332  22222 25556666655544444443332       


Q ss_pred             --------------CCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh------hhhhhccccccc
Q 007371          367 --------------DGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC------YEEMIGFRDIIH  425 (606)
Q Consensus       367 --------------~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~------~~~~~~~~~L~~  425 (606)
                                    ..+.+++|+.|++.+|.--..+        +.....+++|+. .+..+      +.....+++|+.
T Consensus       385 L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  456 (968)
T PLN00113        385 LILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGEL--------PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQM  456 (968)
T ss_pred             EECcCCEecccCCHHHhCCCCCCEEECcCCEeeeEC--------ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcE
Confidence                          0114445555555544321111        000122333333 11111      112334555666


Q ss_pred             eeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCC
Q 007371          426 LQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHI  505 (606)
Q Consensus       426 L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~  505 (606)
                      |.+.+|.-...++..     ...++|+.|++++| ++....|. .+..+++|++|++++|.-...++           ..
T Consensus       457 L~L~~n~~~~~~p~~-----~~~~~L~~L~ls~n-~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p-----------~~  518 (968)
T PLN00113        457 LSLARNKFFGGLPDS-----FGSKRLENLDLSRN-QFSGAVPR-KLGSLSELMQLKLSENKLSGEIP-----------DE  518 (968)
T ss_pred             EECcCceeeeecCcc-----cccccceEEECcCC-ccCCccCh-hhhhhhccCEEECcCCcceeeCC-----------hH
Confidence            666665543333221     12356666777664 34433342 24566777777777665332332           12


Q ss_pred             CCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccccCCccccccccChhhhhhhccccceeeccc
Q 007371          506 GPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQ  584 (606)
Q Consensus       506 ~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~~~~~~~l~~~~~~~~~l~~l~~l~i~~~  584 (606)
                      +..+++|+.|+|++|.-...+|.   ....+++|+.|++++|.-...+|             ..+..+++|+.+.++++
T Consensus       519 ~~~l~~L~~L~Ls~N~l~~~~p~---~~~~l~~L~~L~Ls~N~l~~~~p-------------~~l~~l~~L~~l~ls~N  581 (968)
T PLN00113        519 LSSCKKLVSLDLSHNQLSGQIPA---SFSEMPVLSQLDLSQNQLSGEIP-------------KNLGNVESLVQVNISHN  581 (968)
T ss_pred             HcCccCCCEEECCCCcccccCCh---hHhCcccCCEEECCCCcccccCC-------------hhHhcCcccCEEeccCC
Confidence            34566677777766643333433   44556667777776665444444             23344556666666555

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.97  E-value=3.3e-30  Score=296.77  Aligned_cols=437  Identities=16%  Similarity=0.146  Sum_probs=311.0

Q ss_pred             CCCeEEEecCCCC-cccCCcc--cccccceeeccccccc-ccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEE
Q 007371          100 KDPIAISLTYGGI-QVLPERL--QCPCLELLHTEGDGSM-QVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTL  174 (606)
Q Consensus       100 ~~l~~L~l~~~~~-~~l~~~~--~l~~L~~L~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L  174 (606)
                      +.++.|++++|.+ +.+|...  .+++|++|++++|... .+|.   ..+++|++|++++|.+.. +|..++++.+|++|
T Consensus        93 ~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L  169 (968)
T PLN00113         93 PYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVL  169 (968)
T ss_pred             CCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEE
Confidence            7899999999998 4788765  7899999999888764 4554   468999999999999985 89999999999999


Q ss_pred             EeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCC
Q 007371          175 CLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFS  251 (606)
Q Consensus       175 ~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~  251 (606)
                      ++++|.+..  |..++++++|++|++++|.+. .+|..++++++|++|++++|...+.+|.. ++++++|++|++++|.+
T Consensus       170 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l  248 (968)
T PLN00113        170 DLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYE-IGGLTSLNHLDLVYNNL  248 (968)
T ss_pred             ECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChh-HhcCCCCCEEECcCcee
Confidence            999999876  789999999999999999887 68999999999999999999888889988 99999999999999988


Q ss_pred             CCccccCCCccchHhhccCCCCCEEEEeeCCCC-CCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcc
Q 007371          252 GWEKVEGGSNASLVELERLTKLATLEIEVADAE-ILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLE  329 (606)
Q Consensus       252 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~  329 (606)
                      ....+        ..++++++|++|++++|.+. .+|..+.. ++|+.|++. .+.....++..+..+++|+.|++++|.
T Consensus       249 ~~~~p--------~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        249 TGPIP--------SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS-DNSLSGEIPELVIQLQNLEILHLFSNN  319 (968)
T ss_pred             ccccC--------hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc-CCeeccCCChhHcCCCCCcEEECCCCc
Confidence            76555        78999999999999999874 56766654 899999994 333444566778899999999999988


Q ss_pred             cccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-
Q 007371          330 KVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-  408 (606)
Q Consensus       330 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-  408 (606)
                      +.+..+  .++. .+++|+.|++.+|.....+|..+.   .+++|+.|++++|..-..+...        ...+++|+. 
T Consensus       320 ~~~~~~--~~~~-~l~~L~~L~L~~n~l~~~~p~~l~---~~~~L~~L~Ls~n~l~~~~p~~--------~~~~~~L~~L  385 (968)
T PLN00113        320 FTGKIP--VALT-SLPRLQVLQLWSNKFSGEIPKNLG---KHNNLTVLDLSTNNLTGEIPEG--------LCSSGNLFKL  385 (968)
T ss_pred             cCCcCC--hhHh-cCCCCCEEECcCCCCcCcCChHHh---CCCCCcEEECCCCeeEeeCChh--------HhCcCCCCEE
Confidence            766543  3343 359999999999988778887776   8999999999988643332110        122344444 


Q ss_pred             hhh------hhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEE
Q 007371          409 TIQ------KCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEV  482 (606)
Q Consensus       409 ~i~------~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i  482 (606)
                      .+.      ..+..+..+++|+.|.+.++.-...++.    .+..+++|+.|+++++ .+...++. ....+++|++|++
T Consensus       386 ~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~----~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L  459 (968)
T PLN00113        386 ILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPS----EFTKLPLVYFLDISNN-NLQGRINS-RKWDMPSLQMLSL  459 (968)
T ss_pred             ECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECCh----hHhcCCCCCEEECcCC-cccCccCh-hhccCCCCcEEEC
Confidence            121      2234456677777788887754333332    2356778888888774 45555343 2456778888888


Q ss_pred             ecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccccC---Ccc
Q 007371          483 RNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISN---STS  559 (606)
Q Consensus       483 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~---~~~  559 (606)
                      ++|.-...++..            ...++|+.|++++|.--..++.   ....+++|+.|++++|.-...+|..   ...
T Consensus       460 ~~n~~~~~~p~~------------~~~~~L~~L~ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~  524 (968)
T PLN00113        460 ARNKFFGGLPDS------------FGSKRLENLDLSRNQFSGAVPR---KLGSLSELMQLKLSENKLSGEIPDELSSCKK  524 (968)
T ss_pred             cCceeeeecCcc------------cccccceEEECcCCccCCccCh---hhhhhhccCEEECcCCcceeeCChHHcCccC
Confidence            777644333321            1224455555554432222222   2333444455554444322222211   122


Q ss_pred             ccccccCh--------hhhhhhccccceeeccc
Q 007371          560 VLHMTADN--------KEAQKLKSEKNLLVADQ  584 (606)
Q Consensus       560 ~~~l~~~~--------~~~~~l~~l~~l~i~~~  584 (606)
                      ++.+++..        ..+..+++|+.|.++++
T Consensus       525 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N  557 (968)
T PLN00113        525 LVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN  557 (968)
T ss_pred             CCEEECCCCcccccCChhHhCcccCCEEECCCC
Confidence            22222222        23557788888888887

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.97  E-value=2.1e-31  Score=290.79  Aligned_cols=75  Identities=20%  Similarity=0.326  Sum_probs=67.9

Q ss_pred             chhhhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccCCCCChHhHHHHhhhhh
Q 007371            2 AEVGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRM   81 (606)
Q Consensus         2 ~~~~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~   81 (606)
                      +...+..+.||||+..+|+.++.|++.        ..+||||++|||+++|+..+|++..++++++|+.+|||+||+++|
T Consensus       259 ~~krfllvLDDIW~~~dw~~I~~~~p~--------~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v  330 (889)
T KOG4658|consen  259 EGKRFLLVLDDIWEEVDWDKIGVPFPS--------RENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKV  330 (889)
T ss_pred             ccCceEEEEecccccccHHhcCCCCCC--------ccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhh
Confidence            345567789999999999999999999        889999999999999954449999999999999999999999999


Q ss_pred             cCC
Q 007371           82 FNI   84 (606)
Q Consensus        82 ~~~   84 (606)
                      |..
T Consensus       331 ~~~  333 (889)
T KOG4658|consen  331 GPN  333 (889)
T ss_pred             ccc
Confidence            865

>PLN03210 Resistant to P

Probab=99.92  E-value=2.9e-24  Score=247.67  Aligned_cols=378  Identities=20%  Similarity=0.230  Sum_probs=262.1

Q ss_pred             ccchhHhcCCCCCcEEEeeCCcC------c-cCCccccCCC-CCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcc
Q 007371          136 QVSDHFFKGTEGLKVLNFTRIHF------S-SLPSSLGCLI-NLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQL  206 (606)
Q Consensus       136 ~~~~~~~~~l~~L~~L~l~~~~l------~-~lp~~~~~l~-~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~l  206 (606)
                      .+....|.++++|+.|.+..+..      . .+|..+..++ +||+|.+.++.+.. |..+ ...+|+.|++.++.+..+
T Consensus       548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L  626 (1153)
T PLN03210        548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL  626 (1153)
T ss_pred             eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence            35566789999999999976632      2 2777777765 69999999998888 6665 679999999999999999


Q ss_pred             cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC-CCCC
Q 007371          207 PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA-DAEI  285 (606)
Q Consensus       207 p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~  285 (606)
                      |.++..+++|+.|++++|..+..+|.  ++.+++|++|++++|......+        ..++++++|+.|++.+| .+..
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~L~~c~~L~~lp--------~si~~L~~L~~L~L~~c~~L~~  696 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLKLSDCSSLVELP--------SSIQYLNKLEDLDMSRCENLEI  696 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEEecCCCCccccc--------hhhhccCCCCEEeCCCCCCcCc
Confidence            99999999999999999888888886  8999999999999987655444        78899999999999975 4677


Q ss_pred             CCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccc
Q 007371          286 LPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHEL  365 (606)
Q Consensus       286 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  365 (606)
                      +|..+..++|+.|.+..+... ..++.   ...+|+.|++.++.+ ..+  |..+  .+++|++|.+.++.... ++..+
T Consensus       697 Lp~~i~l~sL~~L~Lsgc~~L-~~~p~---~~~nL~~L~L~~n~i-~~l--P~~~--~l~~L~~L~l~~~~~~~-l~~~~  766 (1153)
T PLN03210        697 LPTGINLKSLYRLNLSGCSRL-KSFPD---ISTNISWLDLDETAI-EEF--PSNL--RLENLDELILCEMKSEK-LWERV  766 (1153)
T ss_pred             cCCcCCCCCCCEEeCCCCCCc-ccccc---ccCCcCeeecCCCcc-ccc--cccc--cccccccccccccchhh-ccccc
Confidence            887766678888877443321 11221   235677777777654 222  2222  24677777776543211 11000


Q ss_pred             cC-----CCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccC
Q 007371          366 DD-----GEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHG  440 (606)
Q Consensus       366 ~~-----~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~  440 (606)
                      .+     ...+++|+.|++++|+.+..+..        ..+.+++|+.                 |.+.+|.+++.+|.+
T Consensus       767 ~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~--------si~~L~~L~~-----------------L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        767 QPLTPLMTMLSPSLTRLFLSDIPSLVELPS--------SIQNLHKLEH-----------------LEIENCINLETLPTG  821 (1153)
T ss_pred             cccchhhhhccccchheeCCCCCCccccCh--------hhhCCCCCCE-----------------EECCCCCCcCeeCCC
Confidence            00     11346777788877776655411        1234455555                 888888888777643


Q ss_pred             CCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccc
Q 007371          441 QALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDL  520 (606)
Q Consensus       441 ~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c  520 (606)
                      .     .+++|+.|++++|.+++.+ |.    ..++|++|++++. .++.+|.           .+..+++|+.|++.+|
T Consensus       822 ~-----~L~sL~~L~Ls~c~~L~~~-p~----~~~nL~~L~Ls~n-~i~~iP~-----------si~~l~~L~~L~L~~C  879 (1153)
T PLN03210        822 I-----NLESLESLDLSGCSRLRTF-PD----ISTNISDLNLSRT-GIEEVPW-----------WIEKFSNLSFLDMNGC  879 (1153)
T ss_pred             C-----CccccCEEECCCCCccccc-cc----cccccCEeECCCC-CCccChH-----------HHhcCCCCCEEECCCC
Confidence            2     5678888888888887776 31    2367888888764 4555543           4567999999999999


Q ss_pred             cccccccccccccccCCCcceEeeccCCCCcccccCCccccccccChhhhhhhccccceeeccc
Q 007371          521 PKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQ  584 (606)
Q Consensus       521 ~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~~~~~~~l~~~~~~~~~l~~l~~l~i~~~  584 (606)
                      ++|+.++.   ....+++|+.+.+.+|++|+.++..........+.......+.+...+...+|
T Consensus       880 ~~L~~l~~---~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC  940 (1153)
T PLN03210        880 NNLQRVSL---NISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINC  940 (1153)
T ss_pred             CCcCccCc---ccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccc
Confidence            99999977   56778999999999999999876432221111222222233444455566677

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=2.9e-26  Score=227.24  Aligned_cols=262  Identities=18%  Similarity=0.171  Sum_probs=194.2

Q ss_pred             CCCeEEEecCCCC--cccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGI--QVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~--~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l  176 (606)
                      +-+|-+++++|.+  ..+|... .++.++-|.+.......+|+++ +.+.+|..|.+.+|++..+...+..++.||.+.+
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL-~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~   85 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEEL-SRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIV   85 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHH-HHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhh
Confidence            4567788888888  5788877 7888888888888888899887 7888999999999988888888888899999999


Q ss_pred             eCCCCCC---CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371          177 DYCRLKD---IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       177 ~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      ..|++..   |..|.++..|.+||+++|++++.|..+..-+++-.|++++| .+..+|..++.+++.|-.|++++|.+..
T Consensus        86 R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N-~IetIPn~lfinLtDLLfLDLS~NrLe~  164 (1255)
T KOG0444|consen   86 RDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYN-NIETIPNSLFINLTDLLFLDLSNNRLEM  164 (1255)
T ss_pred             hccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccC-ccccCCchHHHhhHhHhhhccccchhhh
Confidence            9888655   78888999999999999999999998888889999999885 4788888878889999999999988877


Q ss_pred             ccccCCCccchHhhccCCCCCEEEEeeCCCC-----CCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCc
Q 007371          254 EKVEGGSNASLVELERLTKLATLEIEVADAE-----ILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGL  328 (606)
Q Consensus       254 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~  328 (606)
                      .+         ..++.+.+|++|.+++|.+.     ++|+   .+.|+.|+++..+.....+|.++..+.+|+.++++.|
T Consensus       165 LP---------PQ~RRL~~LqtL~Ls~NPL~hfQLrQLPs---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  165 LP---------PQIRRLSMLQTLKLSNNPLNHFQLRQLPS---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             cC---------HHHHHHhhhhhhhcCCChhhHHHHhcCcc---chhhhhhhcccccchhhcCCCchhhhhhhhhcccccc
Confidence            76         56888889999999888764     3332   2567777776666666666777777777777777764


Q ss_pred             ccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          329 EKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       329 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      ... .  .|+-+-. +++|+.|+|++|.. +.+....   +...+|+.|+++++.
T Consensus       233 ~Lp-~--vPecly~-l~~LrrLNLS~N~i-teL~~~~---~~W~~lEtLNlSrNQ  279 (1255)
T KOG0444|consen  233 NLP-I--VPECLYK-LRNLRRLNLSGNKI-TELNMTE---GEWENLETLNLSRNQ  279 (1255)
T ss_pred             CCC-c--chHHHhh-hhhhheeccCcCce-eeeeccH---HHHhhhhhhccccch
Confidence            431 1  1222222 25666666666432 2222111   244566666666553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=1.2e-23  Score=207.43  Aligned_cols=346  Identities=15%  Similarity=0.137  Sum_probs=200.0

Q ss_pred             CCeEEEecCCCCcccCCc--ccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEee
Q 007371          101 DPIAISLTYGGIQVLPER--LQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLD  177 (606)
Q Consensus       101 ~l~~L~l~~~~~~~l~~~--~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~  177 (606)
                      ..+.|++++|.+..+.-.  .++++|+.+.+.+|....+|... ....+|+.|+|.+|.|+++ ...+..++.||.|+++
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            345666666666444322  36666666666666666666643 3445566666666666652 3355566666667776


Q ss_pred             CCCCCC-C-cccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371          178 YCRLKD-I-AIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE  254 (606)
Q Consensus       178 ~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~  254 (606)
                      .|.|+. + +.+..-.++++|++++|.|+.+- ..+..+.+|-.|.++.|. +..+|...+++|++|+.|++..|.+...
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchhhhhhccccceeee
Confidence            666666 2 55555566667777776666553 235556666666666643 5566666566677777777766665544


Q ss_pred             cccCCCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccc
Q 007371          255 KVEGGSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVS  332 (606)
Q Consensus       255 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~  332 (606)
                      ..        ..+..+++|+.|.+..|++..+..++.  ..+++.|++...... ..-...+-.+..|+.|+|+.|.+ .
T Consensus       237 e~--------ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI-~  306 (873)
T KOG4194|consen  237 EG--------LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAI-Q  306 (873)
T ss_pred             hh--------hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhh-hhhcccccccchhhhhccchhhh-h
Confidence            22        456666667777777666666655543  366666666332211 11112234556666777777665 3


Q ss_pred             ccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhh
Q 007371          333 ILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQK  412 (606)
Q Consensus       333 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~  412 (606)
                      .+....|-  ..++|+.|+|++|....--+..|.   .+..|++|.++++. +..+.+.     .  ...+.+|++    
T Consensus       307 rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~---~L~~Le~LnLs~Ns-i~~l~e~-----a--f~~lssL~~----  369 (873)
T KOG4194|consen  307 RIHIDSWS--FTQKLKELDLSSNRITRLDEGSFR---VLSQLEELNLSHNS-IDHLAEG-----A--FVGLSSLHK----  369 (873)
T ss_pred             eeecchhh--hcccceeEeccccccccCChhHHH---HHHHhhhhcccccc-hHHHHhh-----H--HHHhhhhhh----
Confidence            33332221  236677777776544333333333   56667777776653 3332110     0  223444444    


Q ss_pred             hhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceee
Q 007371          413 CYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVL  492 (606)
Q Consensus       413 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~  492 (606)
                                   |++.+-.--..+... +.++..+++|+.|.+.+ ++++++ +..-+..+++||+|++.+.. +.++.
T Consensus       370 -------------LdLr~N~ls~~IEDa-a~~f~gl~~LrkL~l~g-Nqlk~I-~krAfsgl~~LE~LdL~~Na-iaSIq  432 (873)
T KOG4194|consen  370 -------------LDLRSNELSWCIEDA-AVAFNGLPSLRKLRLTG-NQLKSI-PKRAFSGLEALEHLDLGDNA-IASIQ  432 (873)
T ss_pred             -------------hcCcCCeEEEEEecc-hhhhccchhhhheeecC-ceeeec-chhhhccCcccceecCCCCc-ceeec
Confidence                         777653211112222 24456688999999988 789988 54556788999999998744 55553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.88  E-value=3.8e-23  Score=203.94  Aligned_cols=372  Identities=18%  Similarity=0.190  Sum_probs=259.5

Q ss_pred             CeEEEecCCCCcccCCcc----cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371          102 PIAISLTYGGIQVLPERL----QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD  177 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~----~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~  177 (606)
                      .+.|+.+.+++..+....    --+.-++|++++|.+.++....|.++++|+.+++..|.++.+|...+...||+.|++.
T Consensus        54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~  133 (873)
T KOG4194|consen   54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR  133 (873)
T ss_pred             ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee
Confidence            466788887775542211    2235678999999999998888899999999999999999999988888999999999


Q ss_pred             CCCCCC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371          178 YCRLKD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE  254 (606)
Q Consensus       178 ~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~  254 (606)
                      +|.|+.  -+.+..++.||.||++.|.|+.+|. ++..=.++++|++++|. ++.+..+.+..+.+|-+|.++.|.+...
T Consensus       134 ~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~-It~l~~~~F~~lnsL~tlkLsrNrittL  212 (873)
T KOG4194|consen  134 HNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR-ITTLETGHFDSLNSLLTLKLSRNRITTL  212 (873)
T ss_pred             ccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc-ccccccccccccchheeeecccCccccc
Confidence            999988  4788899999999999999998874 45556789999999965 4555555588899999999999999998


Q ss_pred             cccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371          255 KVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL  334 (606)
Q Consensus       255 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~  334 (606)
                      ++        ..++++++|+.|++..|.+..+...                       .+..+++|+.|.|..|.+... 
T Consensus       213 p~--------r~Fk~L~~L~~LdLnrN~irive~l-----------------------tFqgL~Sl~nlklqrN~I~kL-  260 (873)
T KOG4194|consen  213 PQ--------RSFKRLPKLESLDLNRNRIRIVEGL-----------------------TFQGLPSLQNLKLQRNDISKL-  260 (873)
T ss_pred             CH--------HHhhhcchhhhhhccccceeeehhh-----------------------hhcCchhhhhhhhhhcCcccc-
Confidence            87        8899999999999998887643211                       123344455555555443211 


Q ss_pred             ccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhh
Q 007371          335 QENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCY  414 (606)
Q Consensus       335 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~  414 (606)
                        .++..-.+.++++|+|+.|.....--.++.   +++.|+.|+++.+. ++.+..+.       +...++|+.      
T Consensus       261 --~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf---gLt~L~~L~lS~Na-I~rih~d~-------WsftqkL~~------  321 (873)
T KOG4194|consen  261 --DDGAFYGLEKMEHLNLETNRLQAVNEGWLF---GLTSLEQLDLSYNA-IQRIHIDS-------WSFTQKLKE------  321 (873)
T ss_pred             --cCcceeeecccceeecccchhhhhhccccc---ccchhhhhccchhh-hheeecch-------hhhccccee------
Confidence              222222346677777776654443334455   77777777777763 44443221       344566666      


Q ss_pred             hhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeecc
Q 007371          415 EEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHL  494 (606)
Q Consensus       415 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~  494 (606)
                                 |+++. ..+..++.+.   +..+..|++|.+++ +.+.++ ...-+..+.+|++|++++.. +.-.+..
T Consensus       322 -----------LdLs~-N~i~~l~~~s---f~~L~~Le~LnLs~-Nsi~~l-~e~af~~lssL~~LdLr~N~-ls~~IED  383 (873)
T KOG4194|consen  322 -----------LDLSS-NRITRLDEGS---FRVLSQLEELNLSH-NSIDHL-AEGAFVGLSSLHKLDLRSNE-LSWCIED  383 (873)
T ss_pred             -----------Eeccc-cccccCChhH---HHHHHHhhhhcccc-cchHHH-HhhHHHHhhhhhhhcCcCCe-EEEEEec
Confidence                       77764 3444444333   45667788888877 677777 44455677888888887643 3222211


Q ss_pred             ccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371          495 EELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI  554 (606)
Q Consensus       495 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~  554 (606)
                      .       ......+|+|++|.+.+. +|++++.  .....+++|+.|++.+-+ +.++.
T Consensus       384 a-------a~~f~gl~~LrkL~l~gN-qlk~I~k--rAfsgl~~LE~LdL~~Na-iaSIq  432 (873)
T KOG4194|consen  384 A-------AVAFNGLPSLRKLRLTGN-QLKSIPK--RAFSGLEALEHLDLGDNA-IASIQ  432 (873)
T ss_pred             c-------hhhhccchhhhheeecCc-eeeecch--hhhccCcccceecCCCCc-ceeec
Confidence            1       223455788888888775 7888776  445557778888776643 55554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.86  E-value=7.1e-24  Score=210.45  Aligned_cols=254  Identities=21%  Similarity=0.262  Sum_probs=160.3

Q ss_pred             hHHHHHhhhcc-CCCeEEEecCCCCcccCCcc-cccccceeecccccc--cccchhHhcCCCCCcEEEeeCCcCccCCcc
Q 007371           89 DLEKKMEETIR-KDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGS--MQVSDHFFKGTEGLKVLNFTRIHFSSLPSS  164 (606)
Q Consensus        89 ~l~~~~~di~~-~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~  164 (606)
                      .+.++..++.+ .++.||+++.|.+..+.... .++.||++....|..  ..+|.++| .++.|.+|||++|++.+.|..
T Consensus        43 ~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~  121 (1255)
T KOG0444|consen   43 KLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTN  121 (1255)
T ss_pred             hhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchh
Confidence            33444444444 66777777777765555444 667777777655543  34666664 477777777777777777777


Q ss_pred             ccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCC
Q 007371          165 LGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE  242 (606)
Q Consensus       165 ~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~  242 (606)
                      +.+-+++-+|++++|+|.. | +.+.++..|-+||+++|++..+|+.+..|..|++|.+++|...-. --..+..+++|+
T Consensus       122 LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hf-QLrQLPsmtsL~  200 (1255)
T KOG0444|consen  122 LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHF-QLRQLPSMTSLS  200 (1255)
T ss_pred             hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHH-HHhcCccchhhh
Confidence            7777777777777777666 5 445567777777777777777777777777777777777543211 111144556666


Q ss_pred             EEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcE
Q 007371          243 ELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRL  322 (606)
Q Consensus       243 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  322 (606)
                      +|.+++.+.+-.       .++..+..+.+|+.++++.|++..+|..                        +-.+++|+.
T Consensus       201 vLhms~TqRTl~-------N~Ptsld~l~NL~dvDlS~N~Lp~vPec------------------------ly~l~~Lrr  249 (1255)
T KOG0444|consen  201 VLHMSNTQRTLD-------NIPTSLDDLHNLRDVDLSENNLPIVPEC------------------------LYKLRNLRR  249 (1255)
T ss_pred             hhhcccccchhh-------cCCCchhhhhhhhhccccccCCCcchHH------------------------Hhhhhhhhe
Confidence            666666543221       1225566666777777777666655543                        456677788


Q ss_pred             EEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          323 MMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       323 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      |+|++|.+.. +...  .+.+ .+|++|+++.| .++.+|..+-   .+++|+.|.+.+++
T Consensus       250 LNLS~N~ite-L~~~--~~~W-~~lEtLNlSrN-QLt~LP~avc---KL~kL~kLy~n~Nk  302 (1255)
T KOG0444|consen  250 LNLSGNKITE-LNMT--EGEW-ENLETLNLSRN-QLTVLPDAVC---KLTKLTKLYANNNK  302 (1255)
T ss_pred             eccCcCceee-eecc--HHHH-hhhhhhccccc-hhccchHHHh---hhHHHHHHHhccCc
Confidence            8888876633 2221  2222 78999999986 4556776555   78888888887764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.86  E-value=1.4e-24  Score=205.11  Aligned_cols=259  Identities=24%  Similarity=0.300  Sum_probs=178.4

Q ss_pred             CeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCC
Q 007371          102 PIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  180 (606)
                      +..+.++.|.+..+.+.. ++..+.+|....|....+|..+ .++..++.++.++|++..+|..++.+..|+.++.+.+.
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~  125 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE  125 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccc
Confidence            455666667665555555 6667777777777777777766 56777777777777777777777777777777777777


Q ss_pred             CCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          181 LKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       181 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      +.. |+.++.+..|..++..+|++.++|++++++.+|..|++.+|. ...+|+..+. ++.|++|+...|.....+    
T Consensus       126 ~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~-m~~L~~ld~~~N~L~tlP----  199 (565)
T KOG0472|consen  126 LKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIA-MKRLKHLDCNSNLLETLP----  199 (565)
T ss_pred             eeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHH-HHHHHhcccchhhhhcCC----
Confidence            666 677777777777777777777777777777777777777744 4455555333 777777777666665554    


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCc-ccCCCCCcEEEecCcccccccccch
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPL-LVKSEAPRLMMLKGLEKVSILQEND  338 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~L~~L~L~~~~~~~~~~~~~  338 (606)
                           .+++.+.+|..|++..|++..+|..-++..|..|++  +.+.....+.+ ..+++++..|++.+|+. +  ..|+
T Consensus       200 -----~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~--g~N~i~~lpae~~~~L~~l~vLDLRdNkl-k--e~Pd  269 (565)
T KOG0472|consen  200 -----PELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHV--GENQIEMLPAEHLKHLNSLLVLDLRDNKL-K--EVPD  269 (565)
T ss_pred             -----hhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHh--cccHHHhhHHHHhcccccceeeecccccc-c--cCch
Confidence                 567777777777777777777774444466666655  44444444444 34788888899988765 2  2355


Q ss_pred             hHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          339 GTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       339 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      .+.. +.+|++|+++++ .++.+|..++   ++ .|+.|.+.|+|
T Consensus       270 e~cl-LrsL~rLDlSNN-~is~Lp~sLg---nl-hL~~L~leGNP  308 (565)
T KOG0472|consen  270 EICL-LRSLERLDLSNN-DISSLPYSLG---NL-HLKFLALEGNP  308 (565)
T ss_pred             HHHH-hhhhhhhcccCC-ccccCCcccc---cc-eeeehhhcCCc
Confidence            5554 488999999986 4556676665   88 89999999887

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.85  E-value=7.4e-25  Score=206.86  Aligned_cols=222  Identities=20%  Similarity=0.271  Sum_probs=106.0

Q ss_pred             CeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCC
Q 007371          102 PIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  180 (606)
                      +..+.++.|.+.++|..+ .+..+..++.+.|....+|+.+ ..+..|+.|++++|.+..+|++++.+..|..++..+|.
T Consensus        70 l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i-~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~  148 (565)
T KOG0472|consen   70 LTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQI-GSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQ  148 (565)
T ss_pred             eeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHH-hhhhhhhhhhccccceeecCchHHHHhhhhhhhccccc
Confidence            444444444444444433 4444444444444444444444 33444444444444444444444444444444444444


Q ss_pred             CCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          181 LKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       181 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      +.. |+.++.+.+|-.+++.+|.++++|+..-+++.|++|+... +..+.+|++ ++.+.+|..|++..|.+...+ .++
T Consensus       149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~-lg~l~~L~~LyL~~Nki~~lP-ef~  225 (565)
T KOG0472|consen  149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPE-LGGLESLELLYLRRNKIRFLP-EFP  225 (565)
T ss_pred             cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChh-hcchhhhHHHHhhhcccccCC-CCC
Confidence            444 4444444444444444444444444433344444444433 233444444 444444444444444443333 121


Q ss_pred             Cccc---------------hHhhccCCCCCEEEEeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEE
Q 007371          260 SNAS---------------LVELERLTKLATLEIEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLM  323 (606)
Q Consensus       260 ~~~~---------------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L  323 (606)
                      ....               .+.++++++|..|++..|+++.+|..++. ++|++|++  +++.....+..++++ +|+.|
T Consensus       226 gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl--SNN~is~Lp~sLgnl-hL~~L  302 (565)
T KOG0472|consen  226 GCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL--SNNDISSLPYSLGNL-HLKFL  302 (565)
T ss_pred             ccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc--cCCccccCCcccccc-eeeeh
Confidence            1110               02234566666666666666666666554 55666665  334444555566666 66666


Q ss_pred             EecCccc
Q 007371          324 MLKGLEK  330 (606)
Q Consensus       324 ~L~~~~~  330 (606)
                      -+.||..
T Consensus       303 ~leGNPl  309 (565)
T KOG0472|consen  303 ALEGNPL  309 (565)
T ss_pred             hhcCCch
Confidence            6666543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=6.7e-21  Score=198.05  Aligned_cols=344  Identities=18%  Similarity=0.174  Sum_probs=217.8

Q ss_pred             CCeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          101 DPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       101 ~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      +++.|++++|.+..+|..+ .+.+|+.|.++.|.+..+|.+. .++++|++|.|.+|.+..+|.++..+++|++|++++|
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN  124 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence            3899999999999999887 8899999999999999999776 8899999999999999999999999999999999999


Q ss_pred             CCCC-CcccCCCCCCCEeeecCC-cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371          180 RLKD-IAIVGQLKKLEILILARS-TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE  257 (606)
Q Consensus       180 ~~~~-~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~  257 (606)
                      .+.. |..+..+..+..++.++| .+..++..-     .+++++..+...+.++.+ +..++.  .|++..|.+. .   
T Consensus       125 ~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~-----ik~~~l~~n~l~~~~~~~-i~~l~~--~ldLr~N~~~-~---  192 (1081)
T KOG0618|consen  125 HFGPIPLVIEVLTAEEELAASNNEKIQRLGQTS-----IKKLDLRLNVLGGSFLID-IYNLTH--QLDLRYNEME-V---  192 (1081)
T ss_pred             ccCCCchhHHhhhHHHHHhhhcchhhhhhcccc-----chhhhhhhhhcccchhcc-hhhhhe--eeecccchhh-h---
Confidence            9888 888888888888888887 333333221     444455444444444444 444444  4555555443 1   


Q ss_pred             CCCccchHhhccC--------------------CCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCC
Q 007371          258 GGSNASLVELERL--------------------TKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKS  317 (606)
Q Consensus       258 ~~~~~~~~~l~~l--------------------~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  317 (606)
                             ..+..+                    ++|+.|+...|.+..+-......+|+.+++.....  ...+..+..+
T Consensus       193 -------~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--~~lp~wi~~~  263 (1081)
T KOG0618|consen  193 -------LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--SNLPEWIGAC  263 (1081)
T ss_pred             -------hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh--hcchHHHHhc
Confidence                   112222                    23444444444444333333336777777643322  2233556778


Q ss_pred             CCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccc
Q 007371          318 EAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEG  397 (606)
Q Consensus       318 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  397 (606)
                      .+|+.++...|.+   ...|..+... .+|+.|.+..| .++.+|....   ++.+|++|++..+. +..+..       
T Consensus       264 ~nle~l~~n~N~l---~~lp~ri~~~-~~L~~l~~~~n-el~yip~~le---~~~sL~tLdL~~N~-L~~lp~-------  327 (1081)
T KOG0618|consen  264 ANLEALNANHNRL---VALPLRISRI-TSLVSLSAAYN-ELEYIPPFLE---GLKSLRTLDLQSNN-LPSLPD-------  327 (1081)
T ss_pred             ccceEecccchhH---HhhHHHHhhh-hhHHHHHhhhh-hhhhCCCccc---ccceeeeeeehhcc-ccccch-------
Confidence            8888888888766   2223333332 67788887775 4555666544   78899999998774 332210       


Q ss_pred             cccccccccchh---hhhhhhh--------hhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCccccc
Q 007371          398 ELRRWEGNLNST---IQKCYEE--------MIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAI  466 (606)
Q Consensus       398 ~~~~~~~~L~~~---i~~~~~~--------~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~  466 (606)
                         ..|..+...   +......        -...+.|+.|.+.+-.--...+    +.+..+.+||.|++++ ++|.++ 
T Consensus       328 ---~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~----p~l~~~~hLKVLhLsy-NrL~~f-  398 (1081)
T KOG0618|consen  328 ---NFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCF----PVLVNFKHLKVLHLSY-NRLNSF-  398 (1081)
T ss_pred             ---HHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccch----hhhccccceeeeeecc-cccccC-
Confidence               001111100   0000000        0112334445554422111111    4456788899999988 788887 


Q ss_pred             chhHHhhcCCCcEEEEecCCCcceee
Q 007371          467 PANLLRCLNNLVYLEVRNCDSLEEVL  492 (606)
Q Consensus       467 ~~~~~~~l~~L~~L~i~~c~~l~~l~  492 (606)
                      |...+.+++.|++|++++ +.|+.++
T Consensus       399 pas~~~kle~LeeL~LSG-NkL~~Lp  423 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSG-NKLTTLP  423 (1081)
T ss_pred             CHHHHhchHHhHHHhccc-chhhhhh
Confidence            777788888888888888 4466665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.77  E-value=1.6e-20  Score=195.33  Aligned_cols=384  Identities=20%  Similarity=0.221  Sum_probs=185.3

Q ss_pred             EecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-
Q 007371          106 SLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-  183 (606)
Q Consensus       106 ~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-  183 (606)
                      +.+...+..+|..+ .-..+..|++..|.....|-++..+.-+|+.|+++.|.+..+|..+..+.+|+.|+++.|.+.. 
T Consensus         4 d~s~~~l~~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~v   83 (1081)
T KOG0618|consen    4 DASDEQLELIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSV   83 (1081)
T ss_pred             ccccccCcccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhC
Confidence            34444444444443 2233555555555554444444444444666666666555555555555666666666655555 


Q ss_pred             CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCC--------------
Q 007371          184 IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS--------------  249 (606)
Q Consensus       184 ~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~--------------  249 (606)
                      |.+.+++.+|++|+|.+|.+..+|.++..+++|+.|++++|. .+.+|.- +..++.+..+..++|              
T Consensus        84 p~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~-f~~~Pl~-i~~lt~~~~~~~s~N~~~~~lg~~~ik~~  161 (1081)
T KOG0618|consen   84 PSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH-FGPIPLV-IEVLTAEEELAASNNEKIQRLGQTSIKKL  161 (1081)
T ss_pred             chhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc-cCCCchh-HHhhhHHHHHhhhcchhhhhhccccchhh
Confidence            555555666666666655555566566666666666665543 3344443 444554444444444              


Q ss_pred             -----CCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEE
Q 007371          250 -----FSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMM  324 (606)
Q Consensus       250 -----~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~  324 (606)
                           .+....        +.++..+++  .|++..|.+. .-......+|+.+.........     ....-++++.|.
T Consensus       162 ~l~~n~l~~~~--------~~~i~~l~~--~ldLr~N~~~-~~dls~~~~l~~l~c~rn~ls~-----l~~~g~~l~~L~  225 (1081)
T KOG0618|consen  162 DLRLNVLGGSF--------LIDIYNLTH--QLDLRYNEME-VLDLSNLANLEVLHCERNQLSE-----LEISGPSLTALY  225 (1081)
T ss_pred             hhhhhhcccch--------hcchhhhhe--eeecccchhh-hhhhhhccchhhhhhhhcccce-----EEecCcchheee
Confidence                 332222        133444433  4566655554 1111111233333221000000     001123344444


Q ss_pred             ecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEecccccccccccccccc
Q 007371          325 LKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEG  404 (606)
Q Consensus       325 L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~  404 (606)
                      ...|........|     ...+|++++++.+ ....+|.|+.   .+.+|+.+.+.++.                     
T Consensus       226 a~~n~l~~~~~~p-----~p~nl~~~dis~n-~l~~lp~wi~---~~~nle~l~~n~N~---------------------  275 (1081)
T KOG0618|consen  226 ADHNPLTTLDVHP-----VPLNLQYLDISHN-NLSNLPEWIG---ACANLEALNANHNR---------------------  275 (1081)
T ss_pred             eccCcceeecccc-----ccccceeeecchh-hhhcchHHHH---hcccceEecccchh---------------------
Confidence            4444333222111     1134455555442 2333444333   44445544444433                     


Q ss_pred             ccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCC-CcEEEEe
Q 007371          405 NLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNN-LVYLEVR  483 (606)
Q Consensus       405 ~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~-L~~L~i~  483 (606)
                           +..-+..+....+|+.|.+..+ .++.++..    .+.+.+|++|++.. ++|.++ |..++.-+.. |+.|.++
T Consensus       276 -----l~~lp~ri~~~~~L~~l~~~~n-el~yip~~----le~~~sL~tLdL~~-N~L~~l-p~~~l~v~~~~l~~ln~s  343 (1081)
T KOG0618|consen  276 -----LVALPLRISRITSLVSLSAAYN-ELEYIPPF----LEGLKSLRTLDLQS-NNLPSL-PDNFLAVLNASLNTLNVS  343 (1081)
T ss_pred             -----HHhhHHHHhhhhhHHHHHhhhh-hhhhCCCc----ccccceeeeeeehh-cccccc-chHHHhhhhHHHHHHhhh
Confidence                 2333344444444444666554 45555422    24577888888877 677777 3333333222 4444443


Q ss_pred             cCCCcceeeccccccc--------------cccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCC
Q 007371          484 NCDSLEEVLHLEELIN--------------ADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPD  549 (606)
Q Consensus       484 ~c~~l~~l~~~~~~~~--------------~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~  549 (606)
                      . ..+...+..++...              +..-..+..+++||-|++++. .|.++|.  .....+..|+.|.++|- +
T Consensus       344 ~-n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpa--s~~~kle~LeeL~LSGN-k  418 (1081)
T KOG0618|consen  344 S-NKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPA--SKLRKLEELEELNLSGN-K  418 (1081)
T ss_pred             h-ccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCH--HHHhchHHhHHHhcccc-h
Confidence            2 22333332221110              111223556788888888775 6777765  45566777788877774 5


Q ss_pred             Ccccc
Q 007371          550 METFI  554 (606)
Q Consensus       550 L~~l~  554 (606)
                      |+.+|
T Consensus       419 L~~Lp  423 (1081)
T KOG0618|consen  419 LTTLP  423 (1081)
T ss_pred             hhhhh
Confidence            77776

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=3.1e-18  Score=143.80  Aligned_cols=164  Identities=26%  Similarity=0.339  Sum_probs=90.8

Q ss_pred             ccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCC
Q 007371          114 VLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKK  192 (606)
Q Consensus       114 ~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~  192 (606)
                      .++..+.+.++..|.+++|.+..+|..+ .++++|++|++.+|+++++|.+++.+++||.|++.-|++.. |..++.++-
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~  103 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPA  103 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCch
Confidence            3344444555555555555555555554 45555555555555555555555555555555555555544 555555555


Q ss_pred             CCEeeecCCcCC--cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccC
Q 007371          193 LEILILARSTIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERL  270 (606)
Q Consensus       193 L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l  270 (606)
                      |++||+.+|++.  .+|..+..++-|+.|++++|. .+.+|.. ++++++||.|.+..|.+...+         .+++.+
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~d-vg~lt~lqil~lrdndll~lp---------keig~l  172 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPD-VGKLTNLQILSLRDNDLLSLP---------KEIGDL  172 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChh-hhhhcceeEEeeccCchhhCc---------HHHHHH
Confidence            555555555444  455555555555555555532 3455555 555556665555555544443         455566


Q ss_pred             CCCCEEEEeeCCCCCCCcc
Q 007371          271 TKLATLEIEVADAEILPPN  289 (606)
Q Consensus       271 ~~L~~L~l~~~~~~~~~~~  289 (606)
                      +.|++|.|.+|++..+|+.
T Consensus       173 t~lrelhiqgnrl~vlppe  191 (264)
T KOG0617|consen  173 TRLRELHIQGNRLTVLPPE  191 (264)
T ss_pred             HHHHHHhcccceeeecChh
Confidence            6666666666665555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.63  E-value=5.2e-16  Score=170.54  Aligned_cols=262  Identities=19%  Similarity=0.199  Sum_probs=164.8

Q ss_pred             cccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCc--CccCCc-cccCCCCCcEEEeeCCC-CCC-Cccc
Q 007371          113 QVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIH--FSSLPS-SLGCLINLQTLCLDYCR-LKD-IAIV  187 (606)
Q Consensus       113 ~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--l~~lp~-~~~~l~~L~~L~l~~~~-~~~-~~~i  187 (606)
                      ...|........|...+.++....++..  .+.+.|+.|-+.+|.  +..++. .|..+++|++|++++|. +.. |..|
T Consensus       514 ~~~~~~~~~~~~rr~s~~~~~~~~~~~~--~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I  591 (889)
T KOG4658|consen  514 SEIPQVKSWNSVRRMSLMNNKIEHIAGS--SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI  591 (889)
T ss_pred             cccccccchhheeEEEEeccchhhccCC--CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH
Confidence            3455555566777777777766666654  345577787777775  444444 35668888888888775 455 7888


Q ss_pred             CCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhh
Q 007371          188 GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVEL  267 (606)
Q Consensus       188 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l  267 (606)
                      +.|.+||+|+++++.++.+|.++++|++|.+|++..+.....+|.. +..|++|++|.+......      .+...+.++
T Consensus       592 ~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i-~~~L~~Lr~L~l~~s~~~------~~~~~l~el  664 (889)
T KOG4658|consen  592 GELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGI-LLELQSLRVLRLPRSALS------NDKLLLKEL  664 (889)
T ss_pred             hhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccch-hhhcccccEEEeeccccc------cchhhHHhh
Confidence            8888888888888888888888888888888888876655555433 566888888877665411      122334566


Q ss_pred             ccCCCCCEEEEeeCCCCCCCccccccCCc----EEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccccc--chhHH
Q 007371          268 ERLTKLATLEIEVADAEILPPNFVSVELQ----RYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQE--NDGTK  341 (606)
Q Consensus       268 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~----~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~--~~~~~  341 (606)
                      .++.+|+.+.+.......+........|.    .+.+  ...........+..+.+|+.|.+.+|........  .....
T Consensus       665 ~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~--~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~  742 (889)
T KOG4658|consen  665 ENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI--EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIV  742 (889)
T ss_pred             hcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh--cccccceeecccccccCcceEEEEcCCCchhhcccccccch
Confidence            66666766666543331111111112222    2222  1122233445677788888888888776432221  11111


Q ss_pred             H-hhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEec
Q 007371          342 M-LLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIV  389 (606)
Q Consensus       342 ~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~  389 (606)
                      . .|+++..+.+.+|..........    -.|+|+.|.+..|+.++.+.
T Consensus       743 ~~~f~~l~~~~~~~~~~~r~l~~~~----f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  743 LLCFPNLSKVSILNCHMLRDLTWLL----FAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             hhhHHHHHHHHhhccccccccchhh----ccCcccEEEEecccccccCC
Confidence            1 25778888888887777654322    56899999999999887763

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.4e-17  Score=139.84  Aligned_cols=154  Identities=23%  Similarity=0.333  Sum_probs=144.0

Q ss_pred             CCCeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeC
Q 007371          100 KDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDY  178 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  178 (606)
                      ..+.+|.++.|.+..+|..+ .+.+|++|++.+|.+.++|.++ +.++.||.|++.-|.+..+|..|+.++.|++|++.+
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldlty  111 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTY  111 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhccc
Confidence            66789999999999998888 9999999999999999999998 899999999999999999999999999999999999


Q ss_pred             CCCCC---CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          179 CRLKD---IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       179 ~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      |.+..   |..+..+..|+.|+++.|.+.-+|..++++++|+.|.+.+|. +-.+|.+ ++.++.|++|++.+|.+...+
T Consensus       112 nnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdnd-ll~lpke-ig~lt~lrelhiqgnrl~vlp  189 (264)
T KOG0617|consen  112 NNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDND-LLSLPKE-IGDLTRLRELHIQGNRLTVLP  189 (264)
T ss_pred             cccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCc-hhhCcHH-HHHHHHHHHHhcccceeeecC
Confidence            99877   889999999999999999999999999999999999999965 5578988 999999999999999988777


Q ss_pred             c
Q 007371          256 V  256 (606)
Q Consensus       256 ~  256 (606)
                      +
T Consensus       190 p  190 (264)
T KOG0617|consen  190 P  190 (264)
T ss_pred             h
Confidence            4

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.57  E-value=9.8e-14  Score=149.53  Aligned_cols=247  Identities=17%  Similarity=0.130  Sum_probs=154.1

Q ss_pred             HHHHhhhccCCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCC
Q 007371           91 EKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLIN  170 (606)
Q Consensus        91 ~~~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~  170 (606)
                      -..|.+.....-..|+++.+.+..+|..+. ++|+.|.+.+|.+..+|.    .+++|++|++++|.++.+|..   .++
T Consensus       192 ~~r~~~Cl~~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~s  263 (788)
T PRK15387        192 VQKMRACLNNGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPVL---PPG  263 (788)
T ss_pred             HHHHHHHhcCCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCCCC----CCCCCcEEEecCCccCcccCc---ccc
Confidence            446666666777889999999988888653 478899988888888875    267899999999998888754   356


Q ss_pred             CcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhC------------
Q 007371          171 LQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISK------------  237 (606)
Q Consensus       171 L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~------------  237 (606)
                      |+.|++++|.++. |..   ..+|+.|++++|+++.+|..   +++|+.|++++|.. ..+|.. ...            
T Consensus       264 L~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L-~~Lp~l-p~~L~~L~Ls~N~L~  335 (788)
T PRK15387        264 LLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPAL-PSELCKLWAYNNQLT  335 (788)
T ss_pred             cceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcc-ccCCCC-cccccccccccCccc
Confidence            7777777777665 321   23455666666666655542   34566666665432 233321 100            


Q ss_pred             -----CCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCC
Q 007371          238 -----LSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDP  312 (606)
Q Consensus       238 -----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  312 (606)
                           ..+|++|++++|.+...+.            ...+|+.|+++.|.+..+|...  .+|+.|++..+. .. .++.
T Consensus       336 ~LP~lp~~Lq~LdLS~N~Ls~LP~------------lp~~L~~L~Ls~N~L~~LP~l~--~~L~~LdLs~N~-Lt-~LP~  399 (788)
T PRK15387        336 SLPTLPSGLQELSVSDNQLASLPT------------LPSELYKLWAYNNRLTSLPALP--SGLKELIVSGNR-LT-SLPV  399 (788)
T ss_pred             cccccccccceEecCCCccCCCCC------------CCcccceehhhccccccCcccc--cccceEEecCCc-cc-CCCC
Confidence                 1245666666665544331            0134555666666666555432  457777763322 11 2221


Q ss_pred             cccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          313 LLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       313 ~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                         ..++|+.|++++|.+.. ++.      .+.+|+.|++.+|. ++.+|..+.   .+++|+.|++++|+
T Consensus       400 ---l~s~L~~LdLS~N~Lss-IP~------l~~~L~~L~Ls~Nq-Lt~LP~sl~---~L~~L~~LdLs~N~  456 (788)
T PRK15387        400 ---LPSELKELMVSGNRLTS-LPM------LPSGLLSLSVYRNQ-LTRLPESLI---HLSSETTVNLEGNP  456 (788)
T ss_pred             ---cccCCCEEEccCCcCCC-CCc------chhhhhhhhhccCc-ccccChHHh---hccCCCeEECCCCC
Confidence               13567788888877643 321      12567788888754 456777665   78888889988886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.56  E-value=5.9e-14  Score=152.14  Aligned_cols=276  Identities=14%  Similarity=0.153  Sum_probs=203.8

Q ss_pred             HhHHHHhhhhhcC--CCChhhHHHHHhhhccCCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCC
Q 007371           71 KEALQLFEKRMFN--IPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGL  148 (606)
Q Consensus        71 ~~~~~Lf~~~~~~--~~~~~~l~~~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L  148 (606)
                      ..+|+=..+.+..  .+...+.-..|.+....+...|+++++.+..+|..+ .++++.|++++|.+..+|..++   .+|
T Consensus       147 ~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsLP~~l~---~nL  222 (754)
T PRK15370        147 ELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSLPENLQ---GNI  222 (754)
T ss_pred             HHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcCChhhc---cCC
Confidence            3455544443322  233334444567777788899999999998888754 2579999999999999998763   589


Q ss_pred             cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCccc
Q 007371          149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLL  227 (606)
Q Consensus       149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~  227 (606)
                      ++|++++|.++.+|..+.  .+|+.|++++|.+.. |..+.  .+|++|++++|+++.+|..+.  .+|+.|++++|. +
T Consensus       223 ~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~-L  295 (754)
T PRK15370        223 KTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNS-I  295 (754)
T ss_pred             CEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCc-c
Confidence            999999999999987664  479999999999888 66554  589999999999999998764  589999999975 4


Q ss_pred             ccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCC
Q 007371          228 EVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESE  307 (606)
Q Consensus       228 ~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  307 (606)
                      ..+|.. +.  ++|+.|++++|.+...+.         .+  .++|+.|++.+|.+..+|..+. ++|+.|++..+.. .
T Consensus       296 t~LP~~-lp--~sL~~L~Ls~N~Lt~LP~---------~l--~~sL~~L~Ls~N~Lt~LP~~l~-~sL~~L~Ls~N~L-~  359 (754)
T PRK15370        296 RTLPAH-LP--SGITHLNVQSNSLTALPE---------TL--PPGLKTLEAGENALTSLPASLP-PELQVLDVSKNQI-T  359 (754)
T ss_pred             ccCccc-ch--hhHHHHHhcCCccccCCc---------cc--cccceeccccCCccccCChhhc-CcccEEECCCCCC-C
Confidence            567754 33  478999999998876542         12  2589999999999988887654 7899999854432 2


Q ss_pred             CCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccC-CCCCCCCcEEEeecCC
Q 007371          308 DEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD-GEGFPRLKHLHVKSCS  383 (606)
Q Consensus       308 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-~~~l~~L~~L~l~~c~  383 (606)
                       .++..+  .+.|+.|++++|.+. .+  |..+.   ..|+.|++++|. +..+|..+.. .+.++++..|.+.+++
T Consensus       360 -~LP~~l--p~~L~~LdLs~N~Lt-~L--P~~l~---~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        360 -VLPETL--PPTITTLDVSRNALT-NL--PENLP---AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             -cCChhh--cCCcCEEECCCCcCC-CC--CHhHH---HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence             233333  368999999998774 33  33332   578999999975 4466654431 2346889999999887

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.55  E-value=7.3e-14  Score=150.50  Aligned_cols=253  Identities=19%  Similarity=0.148  Sum_probs=122.1

Q ss_pred             CcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcc
Q 007371          148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWL  226 (606)
Q Consensus       148 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~  226 (606)
                      -.+|+++.+.++.+|..+.  .+|+.|++.+|.++. |.   .+++|++|++++|+++.+|..   .++|+.|++++|. 
T Consensus       203 ~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-  273 (788)
T PRK15387        203 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-  273 (788)
T ss_pred             CcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCcccCc---ccccceeeccCCc-
Confidence            3455555555555555443  245555555555554 32   134555555555555555532   2345555555543 


Q ss_pred             cccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCC
Q 007371          227 LEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDES  306 (606)
Q Consensus       227 ~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  306 (606)
                      +..+|..    .++|+.|++++|.+...+.            ..++|+.|++++|.+..+|..  ...|+.|.+..+. .
T Consensus       274 L~~Lp~l----p~~L~~L~Ls~N~Lt~LP~------------~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~-L  334 (788)
T PRK15387        274 LTHLPAL----PSGLCKLWIFGNQLTSLPV------------LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQ-L  334 (788)
T ss_pred             hhhhhhc----hhhcCEEECcCCccccccc------------cccccceeECCCCccccCCCC--cccccccccccCc-c
Confidence            2233321    1345555555555443321            123455555555555544431  1234444432111 1


Q ss_pred             CCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCce
Q 007371          307 EDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEIL  386 (606)
Q Consensus       307 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~  386 (606)
                      . .++.   ...+|+.|+|++|.+.. ++.      ..++|+.|++.+|. +..+|.      ..++|+.|+++++. ++
T Consensus       335 ~-~LP~---lp~~Lq~LdLS~N~Ls~-LP~------lp~~L~~L~Ls~N~-L~~LP~------l~~~L~~LdLs~N~-Lt  395 (788)
T PRK15387        335 T-SLPT---LPSGLQELSVSDNQLAS-LPT------LPSELYKLWAYNNR-LTSLPA------LPSGLKELIVSGNR-LT  395 (788)
T ss_pred             c-cccc---cccccceEecCCCccCC-CCC------CCcccceehhhccc-cccCcc------cccccceEEecCCc-cc
Confidence            1 1111   11356666666665532 221      12566667666653 334443      22467777776663 33


Q ss_pred             EeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCccccc
Q 007371          387 HIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAI  466 (606)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~  466 (606)
                      .+           +..+++|+.                 |++++. .+..+|..       +.+|+.|++++ ++++.+ 
T Consensus       396 ~L-----------P~l~s~L~~-----------------LdLS~N-~LssIP~l-------~~~L~~L~Ls~-NqLt~L-  437 (788)
T PRK15387        396 SL-----------PVLPSELKE-----------------LMVSGN-RLTSLPML-------PSGLLSLSVYR-NQLTRL-  437 (788)
T ss_pred             CC-----------CCcccCCCE-----------------EEccCC-cCCCCCcc-------hhhhhhhhhcc-Cccccc-
Confidence            22           222344555                 666664 24444321       24566677766 456666 


Q ss_pred             chhHHhhcCCCcEEEEecCC
Q 007371          467 PANLLRCLNNLVYLEVRNCD  486 (606)
Q Consensus       467 ~~~~~~~l~~L~~L~i~~c~  486 (606)
                      |.. +.++++|+.|++++++
T Consensus       438 P~s-l~~L~~L~~LdLs~N~  456 (788)
T PRK15387        438 PES-LIHLSSETTVNLEGNP  456 (788)
T ss_pred             ChH-HhhccCCCeEECCCCC
Confidence            433 3566777777776654

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.46  E-value=1.8e-13  Score=148.39  Aligned_cols=225  Identities=16%  Similarity=0.194  Sum_probs=162.3

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      +.++.|++++|.+..+|.... .+|++|++++|.+..+|..+   ..+|+.|++++|.+..+|..+.  .+|++|++++|
T Consensus       199 ~~L~~L~Ls~N~LtsLP~~l~-~nL~~L~Ls~N~LtsLP~~l---~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N  272 (754)
T PRK15370        199 EQITTLILDNNELKSLPENLQ-GNIKTLYANSNQLTSIPATL---PDTIQEMELSINRITELPERLP--SALQSLDLFHN  272 (754)
T ss_pred             cCCcEEEecCCCCCcCChhhc-cCCCEEECCCCccccCChhh---hccccEEECcCCccCcCChhHh--CCCCEEECcCC
Confidence            568899999999988887553 58999999999888888765   3478999999999988887764  47999999999


Q ss_pred             CCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371          180 RLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG  258 (606)
Q Consensus       180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~  258 (606)
                      .++. |..+.  .+|++|++++|+++.+|..+.  .+|++|++++|.. ..+|.. +  .++|+.|++++|.+...+   
T Consensus       273 ~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~L-t~LP~~-l--~~sL~~L~Ls~N~Lt~LP---  341 (754)
T PRK15370        273 KISCLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSL-TALPET-L--PPGLKTLEAGENALTSLP---  341 (754)
T ss_pred             ccCccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCCcc-ccCCcc-c--cccceeccccCCccccCC---
Confidence            8887 65554  489999999999988886553  4788888888654 456654 2  267888888888776544   


Q ss_pred             CCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccch
Q 007371          259 GSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEND  338 (606)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~  338 (606)
                            ..+.  ++|+.|++++|.+..+|..+ .+.|+.|++..+...  .++..+.  ..|+.|++++|.+. .+  |.
T Consensus       342 ------~~l~--~sL~~L~Ls~N~L~~LP~~l-p~~L~~LdLs~N~Lt--~LP~~l~--~sL~~LdLs~N~L~-~L--P~  405 (754)
T PRK15370        342 ------ASLP--PELQVLDVSKNQITVLPETL-PPTITTLDVSRNALT--NLPENLP--AALQIMQASRNNLV-RL--PE  405 (754)
T ss_pred             ------hhhc--CcccEEECCCCCCCcCChhh-cCCcCEEECCCCcCC--CCCHhHH--HHHHHHhhccCCcc-cC--ch
Confidence                  2222  57888888888888777654 367888888443321  3333332  36888888887764 32  22


Q ss_pred             hHHH---hhccccceecccccC
Q 007371          339 GTKM---LLQRTEGLWLETLEG  357 (606)
Q Consensus       339 ~~~~---~l~~L~~L~l~~~~~  357 (606)
                      .+..   .++++..|++.+|..
T Consensus       406 sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        406 SLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             hHHHHhhcCCCccEEEeeCCCc
Confidence            2322   236777888887754

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.44  E-value=1.6e-14  Score=137.37  Aligned_cols=226  Identities=17%  Similarity=0.161  Sum_probs=142.3

Q ss_pred             CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeC-CcCccCCc-cccCCCCCcEEE
Q 007371          100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTR-IHFSSLPS-SLGCLINLQTLC  175 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp~-~~~~l~~L~~L~  175 (606)
                      +....+.+..|.++.+|...  .+++||.|++++|.+..|.+..|..++.|..|-+.+ |.|+++|+ .|++|..|+.|.
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl  146 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL  146 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence            44567777788887777765  677888888888887777777777777777776666 67777665 567777777777


Q ss_pred             eeCCCCCC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCc---------------------------
Q 007371          176 LDYCRLKD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCW---------------------------  225 (606)
Q Consensus       176 l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~---------------------------  225 (606)
                      +.-|.+.-  ...+..+++|..|.+..|.+..++. .+..+..++++++..|.                           
T Consensus       147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            77776655  3666777777777777776666655 45555555555443321                           


Q ss_pred             ----------------------------------ccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCC
Q 007371          226 ----------------------------------LLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLT  271 (606)
Q Consensus       226 ----------------------------------~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~  271 (606)
                                                        .....|...+++|++|++|++++|.+..+..        ..+..+.
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~--------~aFe~~a  298 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIED--------GAFEGAA  298 (498)
T ss_pred             chHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhh--------hhhcchh
Confidence                                              1112233345666666666666666655544        5555666


Q ss_pred             CCCEEEEeeCCCCCCCccccc--cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371          272 KLATLEIEVADAEILPPNFVS--VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL  334 (606)
Q Consensus       272 ~L~~L~l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~  334 (606)
                      ++++|.+..|+++.+...+..  ..|+.|++ .++......+..+.....|..++|-.|.+...-
T Consensus       299 ~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L-~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC  362 (498)
T KOG4237|consen  299 ELQELYLTRNKLEFVSSGMFQGLSGLKTLSL-YDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNC  362 (498)
T ss_pred             hhhhhhcCcchHHHHHHHhhhccccceeeee-cCCeeEEEecccccccceeeeeehccCcccCcc
Confidence            666666666666555544432  56666666 334444444455556666666666666554443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.29  E-value=5.2e-13  Score=134.20  Aligned_cols=136  Identities=24%  Similarity=0.237  Sum_probs=59.8

Q ss_pred             cCCCCCcEEEeeCCcCcc-CCccccCCCC---CcEEEeeCCCCCC------CcccCCC-CCCCEeeecCCcCC-----cc
Q 007371          143 KGTEGLKVLNFTRIHFSS-LPSSLGCLIN---LQTLCLDYCRLKD------IAIVGQL-KKLEILILARSTIK-----QL  206 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~-lp~~~~~l~~---L~~L~l~~~~~~~------~~~i~~l-~~L~~L~l~~~~l~-----~l  206 (606)
                      ..+++|+.|++++|.+.. .+..+..+.+   |++|++++|.+.+      ...+..+ ++|+.|++++|.++     .+
T Consensus        78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~  157 (319)
T cd00116          78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEAL  157 (319)
T ss_pred             HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence            445555555555555542 2222322222   5555555555442      1233344 55555555555544     22


Q ss_pred             cccccCCCCCCEEecCCCcccc----cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCC
Q 007371          207 PLEIGQLTRLQLLDLSNCWLLE----VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVAD  282 (606)
Q Consensus       207 p~~i~~L~~L~~L~l~~~~~~~----~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  282 (606)
                      +..+..+++|++|++++|...+    .++.. +..+++|++|++++|.+.....    ......+..+++|++|++++|.
T Consensus       158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~-l~~~~~L~~L~L~~n~i~~~~~----~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         158 AKALRANRDLKELNLANNGIGDAGIRALAEG-LKANCNLEVLDLNNNGLTDEGA----SALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             HHHHHhCCCcCEEECcCCCCchHHHHHHHHH-HHhCCCCCEEeccCCccChHHH----HHHHHHhcccCCCCEEecCCCc
Confidence            3334444555555555544332    11222 3334455555555554432110    1112333444555555555544


Q ss_pred             C
Q 007371          283 A  283 (606)
Q Consensus       283 ~  283 (606)
                      +
T Consensus       233 l  233 (319)
T cd00116         233 L  233 (319)
T ss_pred             C
Confidence            3

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.23  E-value=3.1e-12  Score=128.52  Aligned_cols=254  Identities=18%  Similarity=0.105  Sum_probs=145.5

Q ss_pred             cccccceeeccccccc-----ccchhHhcCCCCCcEEEeeCCcCcc-------CCccccCCCCCcEEEeeCCCCCC--Cc
Q 007371          120 QCPCLELLHTEGDGSM-----QVSDHFFKGTEGLKVLNFTRIHFSS-------LPSSLGCLINLQTLCLDYCRLKD--IA  185 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~-----~~~~~~~~~l~~L~~L~l~~~~l~~-------lp~~~~~l~~L~~L~l~~~~~~~--~~  185 (606)
                      .+.+|+.+.+.++.+.     .++.. +...+.++.++++++.+..       ++..+..+.+|++|++++|.+..  +.
T Consensus        21 ~l~~L~~l~l~~~~l~~~~~~~i~~~-l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~   99 (319)
T cd00116          21 KLLCLQVLRLEGNTLGEEAAKALASA-LRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCG   99 (319)
T ss_pred             HHhhccEEeecCCCCcHHHHHHHHHH-HhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHH
Confidence            4445666666665542     23332 3456667777777776552       33456667788888888887764  33


Q ss_pred             ccCCCC---CCCEeeecCCcCC-----cccccccCC-CCCCEEecCCCcccc----cccHHHhhCCCCCCEEEccCCCCC
Q 007371          186 IVGQLK---KLEILILARSTIK-----QLPLEIGQL-TRLQLLDLSNCWLLE----VIAPNVISKLSQLEELYMGNSFSG  252 (606)
Q Consensus       186 ~i~~l~---~L~~L~l~~~~l~-----~lp~~i~~L-~~L~~L~l~~~~~~~----~~p~~~i~~l~~L~~L~l~~~~~~  252 (606)
                      .+..+.   +|++|++++|.+.     .+...+..+ ++|+.|++++|...+    .++.. +..+++|++|++++|.+.
T Consensus       100 ~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         100 VLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA-LRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH-HHhCCCcCEEECcCCCCc
Confidence            343333   4888888888765     233445566 788888888876552    22223 566677888888887665


Q ss_pred             CccccCCCccchHhhccCCCCCEEEEeeCCCCCCC-----cccc-ccCCcEEEEEeCCCCCCCCCCccc----CCCCCcE
Q 007371          253 WEKVEGGSNASLVELERLTKLATLEIEVADAEILP-----PNFV-SVELQRYRIRIGDESEDEFDPLLV----KSEAPRL  322 (606)
Q Consensus       253 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-----~~~~-~~~L~~L~l~~~~~~~~~~~~~l~----~~~~L~~  322 (606)
                      ....    ......+..+++|++|++++|.+....     ..+. .++|+.|++..+............    ..+.|+.
T Consensus       179 ~~~~----~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~  254 (319)
T cd00116         179 DAGI----RALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT  254 (319)
T ss_pred             hHHH----HHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence            3211    112244566678888888877764221     1121 267888877443322111111011    2367888


Q ss_pred             EEecCccccc--ccccchhHHHhhccccceecccccCccc----ccccccCCCCC-CCCcEEEeecCC
Q 007371          323 MMLKGLEKVS--ILQENDGTKMLLQRTEGLWLETLEGVQS----VVHELDDGEGF-PRLKHLHVKSCS  383 (606)
Q Consensus       323 L~L~~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~l-~~L~~L~l~~c~  383 (606)
                      |++.+|.+..  .......+. .+++|+++++++|.....    +...+.   .+ +.|++|++.+.+
T Consensus       255 L~l~~n~i~~~~~~~l~~~~~-~~~~L~~l~l~~N~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  318 (319)
T cd00116         255 LSLSCNDITDDGAKDLAEVLA-EKESLLELDLRGNKFGEEGAQLLAESLL---EPGNELESLWVKDDS  318 (319)
T ss_pred             EEccCCCCCcHHHHHHHHHHh-cCCCccEEECCCCCCcHHHHHHHHHHHh---hcCCchhhcccCCCC
Confidence            8888876641  111111122 236788888888765433    333332   45 688888887654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.21  E-value=1.2e-12  Score=124.79  Aligned_cols=144  Identities=19%  Similarity=0.268  Sum_probs=116.5

Q ss_pred             EEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeC-CCCC
Q 007371          105 ISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDY-CRLK  182 (606)
Q Consensus       105 L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~-~~~~  182 (606)
                      .+-++-++..+|..... .-..+.+..|.+..+|+..|+.+++||.|||++|.|+. -|+.|..+..|-.|-+.+ |+|+
T Consensus        51 VdCr~~GL~eVP~~LP~-~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~  129 (498)
T KOG4237|consen   51 VDCRGKGLTEVPANLPP-ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT  129 (498)
T ss_pred             EEccCCCcccCcccCCC-cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh
Confidence            34444555666653311 33456699999999999999999999999999999999 788999999988888777 7899


Q ss_pred             C-C-cccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCC
Q 007371          183 D-I-AIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSF  250 (606)
Q Consensus       183 ~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~  250 (606)
                      + | ..|++|..|+.|.+.-|++..++ ..+..+++|+.|.+.+| ....++.+.+..+..++++.+..+.
T Consensus       130 ~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn-~~q~i~~~tf~~l~~i~tlhlA~np  199 (498)
T KOG4237|consen  130 DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDN-KIQSICKGTFQGLAAIKTLHLAQNP  199 (498)
T ss_pred             hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccch-hhhhhccccccchhccchHhhhcCc
Confidence            9 5 78999999999999988888554 56889999999999984 4677777557888888988877665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=1.4e-12  Score=129.95  Aligned_cols=179  Identities=23%  Similarity=0.317  Sum_probs=160.8

Q ss_pred             CCCeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeC
Q 007371          100 KDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDY  178 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  178 (606)
                      ......+++.|.+..+|... .+..|..+.++.|.+..+|..+ .++..|.+|+|+.|+++.+|..++.|+ |+.|.+++
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN  152 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN  152 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec
Confidence            44567788999999999887 8889999999999999999887 789999999999999999999988776 99999999


Q ss_pred             CCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371          179 CRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE  257 (606)
Q Consensus       179 ~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~  257 (606)
                      |+++. |..++.+.+|..||.+.|.+..+|..++.+.+|+.|++..|. ...+|.+ +..| .|..|+++.|.+...+  
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~lp~E-l~~L-pLi~lDfScNkis~iP--  227 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDLPEE-LCSL-PLIRLDFSCNKISYLP--  227 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhCCHH-HhCC-ceeeeecccCceeecc--
Confidence            99998 999999999999999999999999999999999999999855 5678887 6755 5999999999988776  


Q ss_pred             CCCccchHhhccCCCCCEEEEeeCCCCCCCccccc
Q 007371          258 GGSNASLVELERLTKLATLEIEVADAEILPPNFVS  292 (606)
Q Consensus       258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~  292 (606)
                             ..+.+|++|++|.+.+|.+..-|+.++.
T Consensus       228 -------v~fr~m~~Lq~l~LenNPLqSPPAqIC~  255 (722)
T KOG0532|consen  228 -------VDFRKMRHLQVLQLENNPLQSPPAQICE  255 (722)
T ss_pred             -------hhhhhhhhheeeeeccCCCCCChHHHHh
Confidence                   7899999999999999999998888866

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.6e-10  Score=102.27  Aligned_cols=128  Identities=26%  Similarity=0.305  Sum_probs=33.3

Q ss_pred             CCCCCcEEEeeCCcCccCCcccc-CCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccc-cCCCCCCEEec
Q 007371          144 GTEGLKVLNFTRIHFSSLPSSLG-CLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEI-GQLTRLQLLDL  221 (606)
Q Consensus       144 ~l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l  221 (606)
                      +..+++.|+|++|.|+.+. .++ .+.+|+.|++++|.++..+.+..+++|++|++++|.++.++..+ ..+++|++|++
T Consensus        17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             --------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence            3444555555555555442 233 34555555555555555444555555555555555555554333 23555555555


Q ss_pred             CCCccc--ccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371          222 SNCWLL--EVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       222 ~~~~~~--~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      ++|...  +.+-.  +..+++|++|++.+|++....     ......+..+++|+.||-.
T Consensus        96 ~~N~I~~l~~l~~--L~~l~~L~~L~L~~NPv~~~~-----~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SNNKISDLNELEP--LSSLPKLRVLSLEGNPVCEKK-----NYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TTS---SCCCCGG--GGG-TT--EEE-TT-GGGGST-----THHHHHHHH-TT-SEETTE
T ss_pred             cCCcCCChHHhHH--HHcCCCcceeeccCCcccchh-----hHHHHHHHHcChhheeCCE
Confidence            554321  11111  455555555555555443221     1223344555555555543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.98  E-value=2.4e-11  Score=121.23  Aligned_cols=183  Identities=20%  Similarity=0.243  Sum_probs=155.6

Q ss_pred             EEEecCCCCcccCCcc---cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCC
Q 007371          104 AISLTYGGIQVLPERL---QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       104 ~L~l~~~~~~~l~~~~---~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~  180 (606)
                      .|.|++-.++.+|...   .+..-...+++.|.+..+|..+ ..+-.|..+.+.+|.+..+|..++++..|.+|+++.|+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence            4566666666666544   3444455668999999999886 67888999999999999999999999999999999999


Q ss_pred             CCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          181 LKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       181 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      ++. |..++.|+ |+.|-+++|+++.+|..++.+..|.+|+.+.|. ...+|.. ++.+.+|+.|.+..|+....+    
T Consensus       133 lS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsq-l~~l~slr~l~vrRn~l~~lp----  205 (722)
T KOG0532|consen  133 LSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQ-LGYLTSLRDLNVRRNHLEDLP----  205 (722)
T ss_pred             hhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHH-hhhHHHHHHHHHhhhhhhhCC----
Confidence            998 88888775 999999999999999999999999999999865 6678877 999999999999999887776    


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCccccc-cCCcEEEE
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPNFVS-VELQRYRI  300 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l  300 (606)
                           .++..| .|.+|++++|++..+|..+.. ++|+.|.+
T Consensus       206 -----~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  206 -----EELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             -----HHHhCC-ceeeeecccCceeecchhhhhhhhheeeee
Confidence                 677755 589999999999999988754 77777776

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.96  E-value=4e-10  Score=99.77  Aligned_cols=137  Identities=24%  Similarity=0.238  Sum_probs=43.2

Q ss_pred             CCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCC-ccc
Q 007371          109 YGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIV  187 (606)
Q Consensus       109 ~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~i  187 (606)
                      .+.+..++...+..+++.|++.++.+..+.. +-..+.+|++|++++|.++.++ .+..+++|++|++++|.++.. +.+
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l   83 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGL   83 (175)
T ss_dssp             ------------------------------S---TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHH
T ss_pred             ccccccccccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccch
Confidence            3444455555555566777777776666543 2124667777777777777664 466677777777777777763 333


Q ss_pred             -CCCCCCCEeeecCCcCCccc--ccccCCCCCCEEecCCCcccccc--cHHHhhCCCCCCEEEcc
Q 007371          188 -GQLKKLEILILARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVI--APNVISKLSQLEELYMG  247 (606)
Q Consensus       188 -~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~--p~~~i~~l~~L~~L~l~  247 (606)
                       ..+++|++|++++|+|..+-  ..+..+++|++|++.+|.....-  -.-++..+++|+.||-.
T Consensus        84 ~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   84 DKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             HHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             HHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence             35677777777777666432  34566777777777776544321  12347788888888643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=4.3e-10  Score=109.03  Aligned_cols=159  Identities=17%  Similarity=0.149  Sum_probs=92.6

Q ss_pred             cccccceeecccccccccch-hHhcCCCCCcEEEeeCCcCcc---CCccccCCCCCcEEEeeCCCCCCC---cccCCCCC
Q 007371          120 QCPCLELLHTEGDGSMQVSD-HFFKGTEGLKVLNFTRIHFSS---LPSSLGCLINLQTLCLDYCRLKDI---AIVGQLKK  192 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~---lp~~~~~l~~L~~L~l~~~~~~~~---~~i~~l~~  192 (606)
                      ++++||...+.++.....+. +....+++++.||+++|-+..   +-.....+++|+.|+++.|++..|   ..-..+.+
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            45556666666655554442 233566777777777765544   223345667777777777765442   12235666


Q ss_pred             CCEeeecCCcCC--cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccC
Q 007371          193 LEILILARSTIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERL  270 (606)
Q Consensus       193 L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l  270 (606)
                      |..|.++.|+++  .+-.....+++|..|++.+|......... ..-+..|+.|++++|.+......       ..++.+
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~-~~i~~~L~~LdLs~N~li~~~~~-------~~~~~l  270 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS-TKILQTLQELDLSNNNLIDFDQG-------YKVGTL  270 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch-hhhhhHHhhccccCCcccccccc-------cccccc
Confidence            777777777665  33334455677777777776322211111 34556677777777766555432       566777


Q ss_pred             CCCCEEEEeeCCCCCC
Q 007371          271 TKLATLEIEVADAEIL  286 (606)
Q Consensus       271 ~~L~~L~l~~~~~~~~  286 (606)
                      +.|+.|+++.+++.++
T Consensus       271 ~~L~~Lnls~tgi~si  286 (505)
T KOG3207|consen  271 PGLNQLNLSSTGIASI  286 (505)
T ss_pred             cchhhhhccccCcchh
Confidence            7777777777776543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.89  E-value=5.9e-11  Score=114.30  Aligned_cols=292  Identities=15%  Similarity=0.068  Sum_probs=141.8

Q ss_pred             CcEEEeeCCCCCC--C--cccCCCCCCCEeeecCC-cCC--cccccccCCCCCCEEecCCCcccccccH-HHhhCCCCCC
Q 007371          171 LQTLCLDYCRLKD--I--AIVGQLKKLEILILARS-TIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAP-NVISKLSQLE  242 (606)
Q Consensus       171 L~~L~l~~~~~~~--~--~~i~~l~~L~~L~l~~~-~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~  242 (606)
                      |+.|.++++.-..  +  ....+++++++|++.+| +++  .+-.--..+++|++|++..|.......- .....+++|+
T Consensus       140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~  219 (483)
T KOG4341|consen  140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLK  219 (483)
T ss_pred             cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHH
Confidence            5566666665222  1  33446677777777777 344  1222234677888888877665443322 2345788888


Q ss_pred             EEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcE
Q 007371          243 ELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRL  322 (606)
Q Consensus       243 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  322 (606)
                      ++++++|.....      ..+-.-.+..++++++...++.-.......                     ..-..+..+.+
T Consensus       220 ~lNlSwc~qi~~------~gv~~~~rG~~~l~~~~~kGC~e~~le~l~---------------------~~~~~~~~i~~  272 (483)
T KOG4341|consen  220 YLNLSWCPQISG------NGVQALQRGCKELEKLSLKGCLELELEALL---------------------KAAAYCLEILK  272 (483)
T ss_pred             HhhhccCchhhc------CcchHHhccchhhhhhhhcccccccHHHHH---------------------HHhccChHhhc
Confidence            888888843211      112233444445555544443221111000                     00011222333


Q ss_pred             EEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEecccccccccccccc
Q 007371          323 MMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRW  402 (606)
Q Consensus       323 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  402 (606)
                      +++..|...+... -+.+...+..|+.|..++|...++.+-+-- ..+.++|+.|.+.+|..+.....      ..+...
T Consensus       273 lnl~~c~~lTD~~-~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL-g~~~~~L~~l~l~~c~~fsd~~f------t~l~rn  344 (483)
T KOG4341|consen  273 LNLQHCNQLTDED-LWLIACGCHALQVLCYSSCTDITDEVLWAL-GQHCHNLQVLELSGCQQFSDRGF------TMLGRN  344 (483)
T ss_pred             cchhhhccccchH-HHHHhhhhhHhhhhcccCCCCCchHHHHHH-hcCCCceEEEeccccchhhhhhh------hhhhcC
Confidence            3333332222221 122333456778888888777665443221 34668888888888876554310      111344


Q ss_pred             ccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccc---hhHHhhcCCCcE
Q 007371          403 EGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIP---ANLLRCLNNLVY  479 (606)
Q Consensus       403 ~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~---~~~~~~l~~L~~  479 (606)
                      .+.|+.                 +.+.+|....+-...  ....+.+.|+.|.+++|..+++..-   .....++..|+.
T Consensus       345 ~~~Le~-----------------l~~e~~~~~~d~tL~--sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~  405 (483)
T KOG4341|consen  345 CPHLER-----------------LDLEECGLITDGTLA--SLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEV  405 (483)
T ss_pred             Chhhhh-----------------hcccccceehhhhHh--hhccCCchhccCChhhhhhhhhhhhhhhhhccccccccce
Confidence            555555                 555555433221000  1123456666666666665555310   011123455666


Q ss_pred             EEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccc
Q 007371          480 LEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRF  526 (606)
Q Consensus       480 L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  526 (606)
                      +.+.+|+.+++-...          .+..+++|+.+++.+|.....-
T Consensus       406 lEL~n~p~i~d~~Le----------~l~~c~~Leri~l~~~q~vtk~  442 (483)
T KOG4341|consen  406 LELDNCPLITDATLE----------HLSICRNLERIELIDCQDVTKE  442 (483)
T ss_pred             eeecCCCCchHHHHH----------HHhhCcccceeeeechhhhhhh
Confidence            666666655442211          2234556666666666555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.84  E-value=2.8e-09  Score=110.33  Aligned_cols=184  Identities=25%  Similarity=0.313  Sum_probs=99.8

Q ss_pred             EEecCCCC-cccCCcccccccceeecccccccccchhHhcCCC-CCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCC
Q 007371          105 ISLTYGGI-QVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTE-GLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLK  182 (606)
Q Consensus       105 L~l~~~~~-~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~  182 (606)
                      +....+.+ .........+.++.|.+.++...+++... ..+. +|+.|++++|.+..+|..++.+++|+.|++++|.+.
T Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeccccccccCchhhhcccceeEEecCCcccccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            44444444 33333334455666666666666665543 3332 566666666666666555666666666666666666


Q ss_pred             C-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCc
Q 007371          183 D-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSN  261 (606)
Q Consensus       183 ~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~  261 (606)
                      + +...+.+.+|+.|+++++.+..+|..+..+..|++|.+.+|... ..+.. +.++.++..+.+.++.+...+      
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~-~~~~~~l~~l~l~~n~~~~~~------  248 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSS-LSNLKNLSGLELSNNKLEDLP------  248 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchh-hhhcccccccccCCceeeecc------
Confidence            5 44444666666666666666666655555555666666654322 22222 555566666655555443321      


Q ss_pred             cchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEE
Q 007371          262 ASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRI  300 (606)
Q Consensus       262 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  300 (606)
                         ..++.+++++.|+++.|.+..++......+++.|++
T Consensus       249 ---~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~  284 (394)
T COG4886         249 ---ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDL  284 (394)
T ss_pred             ---chhccccccceeccccccccccccccccCccCEEec
Confidence               445555556666666666655555222255555555

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.82  E-value=2.7e-09  Score=110.47  Aligned_cols=190  Identities=24%  Similarity=0.236  Sum_probs=116.0

Q ss_pred             eeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCC-CCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcC
Q 007371          126 LLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLI-NLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTI  203 (606)
Q Consensus       126 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l  203 (606)
                      .+....+........+ ..+..+..|++.++.+.++|.....+. +|+.|+++++.+.. |..++.+++|+.|++++|++
T Consensus        97 ~l~~~~~~~~~~~~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh
Confidence            3455555442233332 345667777777777777777666664 77777777777766 46677777777777777777


Q ss_pred             CcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCC
Q 007371          204 KQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADA  283 (606)
Q Consensus       204 ~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  283 (606)
                      ..+|...+.+++|+.|++++|. ...+|.. ++.+..|++|.+++|.....+         ..++++.++..+.+..+..
T Consensus       176 ~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~-~~~~~~L~~l~~~~N~~~~~~---------~~~~~~~~l~~l~l~~n~~  244 (394)
T COG4886         176 SDLPKLLSNLSNLNNLDLSGNK-ISDLPPE-IELLSALEELDLSNNSIIELL---------SSLSNLKNLSGLELSNNKL  244 (394)
T ss_pred             hhhhhhhhhhhhhhheeccCCc-cccCchh-hhhhhhhhhhhhcCCcceecc---------hhhhhcccccccccCCcee
Confidence            7777666677777777777743 5566654 455556777777776422222         4566666666666666666


Q ss_pred             CCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccc
Q 007371          284 EILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEK  330 (606)
Q Consensus       284 ~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  330 (606)
                      ..++..+.. ..++.|++........   ..+.....++.|+++++..
T Consensus       245 ~~~~~~~~~l~~l~~L~~s~n~i~~i---~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         245 EDLPESIGNLSNLETLDLSNNQISSI---SSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             eeccchhccccccceecccccccccc---ccccccCccCEEeccCccc
Confidence            554444433 4566666633222222   1156666777777777554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=8e-10  Score=107.21  Aligned_cols=208  Identities=17%  Similarity=0.126  Sum_probs=130.7

Q ss_pred             cCCCCCcEEEeeCCcCccCC--ccccCCCCCcEEEeeCCCCCC----CcccCCCCCCCEeeecCCcCCccccc--ccCCC
Q 007371          143 KGTEGLKVLNFTRIHFSSLP--SSLGCLINLQTLCLDYCRLKD----IAIVGQLKKLEILILARSTIKQLPLE--IGQLT  214 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~----~~~i~~l~~L~~L~l~~~~l~~lp~~--i~~L~  214 (606)
                      +++++|+...+.++.+...+  .....|++++.|++++|-+..    ......|++|+.|+++.|.+...-.+  -..+.
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            67889999999988877766  367889999999999987766    25667889999999998876633221  22567


Q ss_pred             CCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccC
Q 007371          215 RLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVE  294 (606)
Q Consensus       215 ~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  294 (606)
                      .|+.|.+++|.....--..++..+++|+.|++..|.......        ..-..+..|++|++++|.+-.++..     
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~--------~~~~i~~~L~~LdLs~N~li~~~~~-----  264 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKA--------TSTKILQTLQELDLSNNNLIDFDQG-----  264 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceec--------chhhhhhHHhhccccCCcccccccc-----
Confidence            788888888876654444546777888888888774222111        2334455677778877766544422     


Q ss_pred             CcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchh----HHHhhccccceecccccCcccccccccCCCC
Q 007371          295 LQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG----TKMLLQRTEGLWLETLEGVQSVVHELDDGEG  370 (606)
Q Consensus       295 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~  370 (606)
                                       ...+.++.|+.|+++.+... ++..|+.    ....|++|++|.+..|.. .+++. +..+..
T Consensus       265 -----------------~~~~~l~~L~~Lnls~tgi~-si~~~d~~s~~kt~~f~kL~~L~i~~N~I-~~w~s-l~~l~~  324 (505)
T KOG3207|consen  265 -----------------YKVGTLPGLNQLNLSSTGIA-SIAEPDVESLDKTHTFPKLEYLNISENNI-RDWRS-LNHLRT  324 (505)
T ss_pred             -----------------cccccccchhhhhccccCcc-hhcCCCccchhhhcccccceeeecccCcc-ccccc-cchhhc
Confidence                             22355566666666665542 2222221    113467788888777654 12221 111335


Q ss_pred             CCCCcEEEeecCC
Q 007371          371 FPRLKHLHVKSCS  383 (606)
Q Consensus       371 l~~L~~L~l~~c~  383 (606)
                      +++|+.|.+..++
T Consensus       325 l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  325 LENLKHLRITLNY  337 (505)
T ss_pred             cchhhhhhccccc
Confidence            6677777665443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.76  E-value=8.8e-10  Score=101.63  Aligned_cols=136  Identities=17%  Similarity=0.149  Sum_probs=113.6

Q ss_pred             CCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCC
Q 007371          144 GTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSN  223 (606)
Q Consensus       144 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~  223 (606)
                      ..+.|..+|+++|.|+.+-.++.-.+.+|.|++++|.+..+..+..+++|+.||+++|.++++-.+=.+|-+.+.|.+.+
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            35678899999999999888888889999999999998887778999999999999998887766666888999999998


Q ss_pred             CcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371          224 CWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPN  289 (606)
Q Consensus       224 ~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  289 (606)
                      | .++.+..  ++++-+|..|++++|.+.....       ...+++++-|+.+.+.+|.+..++..
T Consensus       362 N-~iE~LSG--L~KLYSLvnLDl~~N~Ie~lde-------V~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  362 N-KIETLSG--LRKLYSLVNLDLSSNQIEELDE-------VNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             h-hHhhhhh--hHhhhhheeccccccchhhHHH-------hcccccccHHHHHhhcCCCccccchH
Confidence            5 4566554  7889999999999998765432       37789999999999999988766654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.68  E-value=1.8e-09  Score=99.59  Aligned_cols=128  Identities=26%  Similarity=0.228  Sum_probs=59.6

Q ss_pred             ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCC-cccCCCCCCCEeeecCC
Q 007371          123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILILARS  201 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~~i~~l~~L~~L~l~~~  201 (606)
                      .|+.+++++|.+..+.+++ .-.+.+|+|++++|.+..+-. +..+++|+.|++++|.++.. .-=.++-|.++|.+++|
T Consensus       285 ~LtelDLS~N~I~~iDESv-KL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESV-KLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hhhhccccccchhhhhhhh-hhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh
Confidence            4445555555555554443 444555555555555544322 44455555555555544441 11123344445555555


Q ss_pred             cCCcccccccCCCCCCEEecCCCccccccc-HHHhhCCCCCCEEEccCCCCCCc
Q 007371          202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIA-PNVISKLSQLEELYMGNSFSGWE  254 (606)
Q Consensus       202 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~~i~~l~~L~~L~l~~~~~~~~  254 (606)
                      .+..+ .++++|.+|..|++++|+. +.+. ...||+++.|+++.+.+|.+...
T Consensus       363 ~iE~L-SGL~KLYSLvnLDl~~N~I-e~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  363 KIETL-SGLRKLYSLVNLDLSSNQI-EELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hHhhh-hhhHhhhhheeccccccch-hhHHHhcccccccHHHHHhhcCCCcccc
Confidence            44444 3445555555555555432 1111 11155555555555555554443

>PLN03150 hypothetical protein; Provisional

Probab=98.54  E-value=1.9e-07  Score=101.32  Aligned_cols=105  Identities=21%  Similarity=0.274  Sum_probs=79.6

Q ss_pred             CCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEc
Q 007371          170 NLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM  246 (606)
Q Consensus       170 ~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l  246 (606)
                      .++.|+++++.+.+  |..++++++|+.|++++|.+. .+|..++.+++|+.|++++|...+.+|.. ++++++|++|++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~-l~~L~~L~~L~L  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES-LGQLTSLRILNL  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchH-HhcCCCCCEEEC
Confidence            36778888888776  677888888888888888877 67778888888888888888777788877 788888888888


Q ss_pred             cCCCCCCccccCCCccchHhhccC-CCCCEEEEeeCCC
Q 007371          247 GNSFSGWEKVEGGSNASLVELERL-TKLATLEIEVADA  283 (606)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~  283 (606)
                      ++|.+.+..+        ..++.+ .++..+++.+|..
T Consensus       498 s~N~l~g~iP--------~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        498 NGNSLSGRVP--------AALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             cCCcccccCC--------hHHhhccccCceEEecCCcc
Confidence            8887766555        455443 3566777776653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.48  E-value=7.7e-09  Score=100.00  Aligned_cols=220  Identities=20%  Similarity=0.220  Sum_probs=133.3

Q ss_pred             ccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccc
Q 007371          314 LVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVR  393 (606)
Q Consensus       314 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~  393 (606)
                      ...+++++.|.+.+|.+.+.... ..+...+++|++|++..|..+++..-... ..++++|++|.+++|+.+..-  +..
T Consensus       160 ~~~CpnIehL~l~gc~~iTd~s~-~sla~~C~~l~~l~L~~c~~iT~~~Lk~l-a~gC~kL~~lNlSwc~qi~~~--gv~  235 (483)
T KOG4341|consen  160 ASNCPNIEHLALYGCKKITDSSL-LSLARYCRKLRHLNLHSCSSITDVSLKYL-AEGCRKLKYLNLSWCPQISGN--GVQ  235 (483)
T ss_pred             hhhCCchhhhhhhcceeccHHHH-HHHHHhcchhhhhhhcccchhHHHHHHHH-HHhhhhHHHhhhccCchhhcC--cch
Confidence            46788888888888775444332 34566788999999999888887543322 458999999999999987651  100


Q ss_pred             cccccccccccccch-hhhhhhhh----h----hccccccceeccccccccccccCCCCCccccCCccEEEeccCCCccc
Q 007371          394 REEGELRRWEGNLNS-TIQKCYEE----M----IGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSS  464 (606)
Q Consensus       394 ~~~~~~~~~~~~L~~-~i~~~~~~----~----~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~  464 (606)
                      ..    ......+++ ..+.|-+.    +    .....+..+++.+|..+.+...-.  .......|+.|..++|..+.+
T Consensus       236 ~~----~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~--i~~~c~~lq~l~~s~~t~~~d  309 (483)
T KOG4341|consen  236 AL----QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL--IACGCHALQVLCYSSCTDITD  309 (483)
T ss_pred             HH----hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH--HhhhhhHhhhhcccCCCCCch
Confidence            00    222333444 22333211    0    112334556666666555432100  012346778888888888777


Q ss_pred             ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEee
Q 007371          465 AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTI  544 (606)
Q Consensus       465 l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i  544 (606)
                      ..-..+.++.++|+.|.+..|.++.+.....         -..+.+.|+.+++.+|--..+-.. -.....+|.|+.+.+
T Consensus       310 ~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~---------l~rn~~~Le~l~~e~~~~~~d~tL-~sls~~C~~lr~lsl  379 (483)
T KOG4341|consen  310 EVLWALGQHCHNLQVLELSGCQQFSDRGFTM---------LGRNCPHLERLDLEECGLITDGTL-ASLSRNCPRLRVLSL  379 (483)
T ss_pred             HHHHHHhcCCCceEEEeccccchhhhhhhhh---------hhcCChhhhhhcccccceehhhhH-hhhccCCchhccCCh
Confidence            6445566778888888888888776654322         124677888888888755443311 112345777888888


Q ss_pred             ccCCCCccc
Q 007371          545 ENCPDMETF  553 (606)
Q Consensus       545 ~~Cp~L~~l  553 (606)
                      +.|...+..
T Consensus       380 shce~itD~  388 (483)
T KOG4341|consen  380 SHCELITDE  388 (483)
T ss_pred             hhhhhhhhh
Confidence            877655543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.38  E-value=3.5e-07  Score=66.31  Aligned_cols=55  Identities=27%  Similarity=0.377  Sum_probs=23.9

Q ss_pred             CCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371          147 GLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARS  201 (606)
Q Consensus       147 ~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~  201 (606)
                      +|++|++++|.++.+|. .|.++++|++|++++|.+..  +..+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            34444444444444332 33444444444444444433  234444444444444444

...

>PLN03150 hypothetical protein; Provisional

Probab=98.37  E-value=9.9e-07  Score=95.87  Aligned_cols=100  Identities=20%  Similarity=0.264  Sum_probs=83.2

Q ss_pred             CCCEeeecCCcCC-cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccC
Q 007371          192 KLEILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERL  270 (606)
Q Consensus       192 ~L~~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l  270 (606)
                      .++.|+++++.+. .+|..++++++|+.|++++|...+.+|.. ++.+++|+.|++++|.+.+..+        ..++++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~-~~~l~~L~~LdLs~N~lsg~iP--------~~l~~L  489 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPS-LGSITSLEVLDLSYNSFNGSIP--------ESLGQL  489 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChH-HhCCCCCCEEECCCCCCCCCCc--------hHHhcC
Confidence            4788899999887 78888999999999999998888889987 8999999999999998887665        788999


Q ss_pred             CCCCEEEEeeCCCC-CCCccccc--cCCcEEEE
Q 007371          271 TKLATLEIEVADAE-ILPPNFVS--VELQRYRI  300 (606)
Q Consensus       271 ~~L~~L~l~~~~~~-~~~~~~~~--~~L~~L~l  300 (606)
                      ++|+.|++++|.+. .+|..+..  .++..+++
T Consensus       490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            99999999998874 67776543  35556665

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.36  E-value=3.2e-07  Score=66.53  Aligned_cols=60  Identities=25%  Similarity=0.383  Sum_probs=50.6

Q ss_pred             cccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCC
Q 007371          122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~  181 (606)
                      ++|++|++++|.+..++.+.|..+++|++|++++|.++.++ ..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            46788888888888888888889999999999999988854 5778999999999998864

...

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.32  E-value=9.2e-08  Score=90.67  Aligned_cols=188  Identities=16%  Similarity=0.161  Sum_probs=134.1

Q ss_pred             HHhhhcc-CCCeEEEecCCCCc--ccCC---cc-cccccceeecccccccccchhH-------------hcCCCCCcEEE
Q 007371           93 KMEETIR-KDPIAISLTYGGIQ--VLPE---RL-QCPCLELLHTEGDGSMQVSDHF-------------FKGTEGLKVLN  152 (606)
Q Consensus        93 ~~~di~~-~~l~~L~l~~~~~~--~l~~---~~-~l~~L~~L~~~~~~~~~~~~~~-------------~~~l~~L~~L~  152 (606)
                      ...-++. ++++.++||.|.++  .++.   .+ .+..|+.|.+.+|.++......             ...-+.||++.
T Consensus        84 l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i  163 (382)
T KOG1909|consen   84 LSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFI  163 (382)
T ss_pred             HHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEE
Confidence            3333333 58999999999982  2222   22 6889999999999876543322             24567899999


Q ss_pred             eeCCcCcc-----CCccccCCCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcCC-----cccccccCCCCC
Q 007371          153 FTRIHFSS-----LPSSLGCLINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTIK-----QLPLEIGQLTRL  216 (606)
Q Consensus       153 l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L  216 (606)
                      ...|.+..     +...+...+.|+.+.+..|.|..  .    ..+..+++|++||+..|.++     .+-..+..+++|
T Consensus       164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L  243 (382)
T KOG1909|consen  164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHL  243 (382)
T ss_pred             eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchh
Confidence            99998765     33456777899999999998765  2    56789999999999999766     344556678899


Q ss_pred             CEEecCCCccccc----ccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          217 QLLDLSNCWLLEV----IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       217 ~~L~l~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      +.|++++|.....    +....-...++|++|.+.+|.+.....    ......+...+.|++|++.+|.+.
T Consensus       244 ~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~----~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  244 RELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAA----LALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             eeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHH----HHHHHHHhcchhhHHhcCCccccc
Confidence            9999999865432    223323457899999999987654321    223345566889999999998873

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.32  E-value=9e-09  Score=105.94  Aligned_cols=129  Identities=24%  Similarity=0.238  Sum_probs=96.4

Q ss_pred             CCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCC
Q 007371          145 TEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSN  223 (606)
Q Consensus       145 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~  223 (606)
                      ...|.+.++++|.+..+-.++.-+++|+.|+|++|++.+...+..+++|.+||+++|.+..+|.- ...+ +|+.|.+++
T Consensus       163 Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn  241 (1096)
T KOG1859|consen  163 WNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN  241 (1096)
T ss_pred             hhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhh-hheeeeecc
Confidence            34567778888888777777778888999999999888877888889999999999988888752 3333 388888888


Q ss_pred             CcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          224 CWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       224 ~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      |. +..+-.  |.+|++|+.|++++|-+.....       +.-+..+..|+.|.+.+|.+-
T Consensus       242 N~-l~tL~g--ie~LksL~~LDlsyNll~~hse-------L~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  242 NA-LTTLRG--IENLKSLYGLDLSYNLLSEHSE-------LEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cH-HHhhhh--HHhhhhhhccchhHhhhhcchh-------hhHHHHHHHHHHHhhcCCccc
Confidence            65 444443  7888899999988887654432       355666677888888887653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=2.5e-08  Score=92.24  Aligned_cols=66  Identities=14%  Similarity=0.025  Sum_probs=44.6

Q ss_pred             ccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          314 LVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       314 l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      ...|+++..|+|++|..... ..-. ...-|+.|++|.++.|..+.  |..+-.++..|+|.+|++.+|-
T Consensus       309 ~~rcp~l~~LDLSD~v~l~~-~~~~-~~~kf~~L~~lSlsRCY~i~--p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  309 VRRCPNLVHLDLSDSVMLKN-DCFQ-EFFKFNYLQHLSLSRCYDII--PETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HHhCCceeeeccccccccCc-hHHH-HHHhcchheeeehhhhcCCC--hHHeeeeccCcceEEEEecccc
Confidence            35688888888888655433 1111 12236889999999887653  3333336689999999999885

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.30  E-value=2e-06  Score=85.79  Aligned_cols=134  Identities=16%  Similarity=0.270  Sum_probs=78.9

Q ss_pred             hccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEecccccccccccccc-ccccchhhhhhhhhhhcccc
Q 007371          344 LQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRW-EGNLNSTIQKCYEEMIGFRD  422 (606)
Q Consensus       344 l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~-~~~L~~~i~~~~~~~~~~~~  422 (606)
                      +++++.|++++| .++.+|. +.     ++|++|.+++|..++.+           ++. .++|+.              
T Consensus        51 ~~~l~~L~Is~c-~L~sLP~-LP-----~sLtsL~Lsnc~nLtsL-----------P~~LP~nLe~--------------   98 (426)
T PRK15386         51 ARASGRLYIKDC-DIESLPV-LP-----NELTEITIENCNNLTTL-----------PGSIPEGLEK--------------   98 (426)
T ss_pred             hcCCCEEEeCCC-CCcccCC-CC-----CCCcEEEccCCCCcccC-----------Cchhhhhhhh--------------
Confidence            377888888887 6666663 32     46888888888877655           222 246666              


Q ss_pred             ccceeccccccccccccCCCCCccccCCccEEEecc--CCCcccccchhHHhhcCCCcEEEEecCCCcceeecccccccc
Q 007371          423 IIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDD--CTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINA  500 (606)
Q Consensus       423 L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~--C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~  500 (606)
                         |.+.+|.++..+|          ++|+.|.+..  |..+..+ |       ++|++|.+.++........       
T Consensus        99 ---L~Ls~Cs~L~sLP----------~sLe~L~L~~n~~~~L~~L-P-------ssLk~L~I~~~n~~~~~~l-------  150 (426)
T PRK15386         99 ---LTVCHCPEISGLP----------ESVRSLEIKGSATDSIKNV-P-------NGLTSLSINSYNPENQARI-------  150 (426)
T ss_pred             ---eEccCcccccccc----------cccceEEeCCCCCcccccC-c-------chHhheecccccccccccc-------
Confidence               8888887766543          3566666653  3334444 2       3566777654321111100       


Q ss_pred             ccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccC
Q 007371          501 DKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENC  547 (606)
Q Consensus       501 ~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~C  547 (606)
                          .....++|+.|.+.+|..+. +|.     ..+.+|+.|.+..+
T Consensus       151 ----p~~LPsSLk~L~Is~c~~i~-LP~-----~LP~SLk~L~ls~n  187 (426)
T PRK15386        151 ----DNLISPSLKTLSLTGCSNII-LPE-----KLPESLQSITLHIE  187 (426)
T ss_pred             ----ccccCCcccEEEecCCCccc-Ccc-----cccccCcEEEeccc
Confidence                00123678888888887553 222     12468888888665

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=1.6e-08  Score=93.44  Aligned_cols=89  Identities=20%  Similarity=0.166  Sum_probs=54.9

Q ss_pred             CCccEEEeccCCCcccc-cchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecccccccccc
Q 007371          449 NNLFDLVVDDCTNMSSA-IPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFC  527 (606)
Q Consensus       449 ~~L~~L~i~~C~~L~~l-~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~  527 (606)
                      ++|+.|+|++|.+--.. -...+...+|+|.+|++++|..++.--.          ..+..|+.|++|.++.|=.+----
T Consensus       286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~----------~~~~kf~~L~~lSlsRCY~i~p~~  355 (419)
T KOG2120|consen  286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF----------QEFFKFNYLQHLSLSRCYDIIPET  355 (419)
T ss_pred             hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH----------HHHHhcchheeeehhhhcCCChHH
Confidence            56777777777532111 1123456788888888888887765111          124568888888888885432110


Q ss_pred             ccccccccCCCcceEeeccCCC
Q 007371          528 NFTRNIIELPKLRYLTIENCPD  549 (606)
Q Consensus       528 ~~~~~~~~~~~L~~L~i~~Cp~  549 (606)
                        -......|+|.+|++.||-.
T Consensus       356 --~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  356 --LLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             --eeeeccCcceEEEEeccccC
Confidence              02355678888888888853

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.25  E-value=2e-07  Score=96.66  Aligned_cols=81  Identities=26%  Similarity=0.381  Sum_probs=36.7

Q ss_pred             cCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecC
Q 007371          143 KGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLS  222 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~  222 (606)
                      ..+++|.+|++.+|.+..+...+..+.+|++|++++|.|+....+..+..|+.|++++|.++.+. ++..+++|+.++++
T Consensus        92 ~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   92 SKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDIS-GLESLKSLKLLDLS  170 (414)
T ss_pred             ccccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhcc-CCccchhhhcccCC
Confidence            33444444444444444443334444444444444444444444444444444444444444332 23334444444444


Q ss_pred             CC
Q 007371          223 NC  224 (606)
Q Consensus       223 ~~  224 (606)
                      +|
T Consensus       171 ~n  172 (414)
T KOG0531|consen  171 YN  172 (414)
T ss_pred             cc
Confidence            43

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=98.22  E-value=8.5e-08  Score=94.66  Aligned_cols=71  Identities=23%  Similarity=0.257  Sum_probs=51.4

Q ss_pred             hhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCc-cccccCCCCChHhHHHHhhhhhcC
Q 007371            5 GLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSC-QKNFPIDALPRKEALQLFEKRMFN   83 (606)
Q Consensus         5 ~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~-~~~~~l~~L~~~~~~~Lf~~~~~~   83 (606)
                      ....+.||||+..+|+.+..+++.        +..||+||||||+..| +..+.. ...+++++|+.+++++||.+.++.
T Consensus       102 ~~LlVlDdv~~~~~~~~l~~~~~~--------~~~~~kilvTTR~~~v-~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~  172 (287)
T PF00931_consen  102 RCLLVLDDVWDEEDLEELREPLPS--------FSSGSKILVTTRDRSV-AGSLGGTDKVIELEPLSEEEALELFKKRAGR  172 (287)
T ss_dssp             SEEEEEEEE-SHHHH-------HC--------HHSS-EEEEEESCGGG-GTTHHSCEEEEECSS--HHHHHHHHHHHHTS
T ss_pred             cceeeeeeeccccccccccccccc--------cccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            556788999999999999988887        7789999999999999 455443 788999999999999999999874


Q ss_pred             C
Q 007371           84 I   84 (606)
Q Consensus        84 ~   84 (606)
                      .
T Consensus       173 ~  173 (287)
T PF00931_consen  173 K  173 (287)
T ss_dssp             H
T ss_pred             c
Confidence            3

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.16  E-value=7.1e-07  Score=96.66  Aligned_cols=147  Identities=20%  Similarity=0.223  Sum_probs=104.7

Q ss_pred             CCCeEEEecCCCC--cccCCcc--cccccceeeccccccccc-chhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEE
Q 007371          100 KDPIAISLTYGGI--QVLPERL--QCPCLELLHTEGDGSMQV-SDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTL  174 (606)
Q Consensus       100 ~~l~~L~l~~~~~--~~l~~~~--~l~~L~~L~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L  174 (606)
                      .++++|++++...  ...+...  .+|.|++|.+.+-....- -..++.++++|+.||+++++++.+ ..+++|++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            8899999998665  3333333  789999999776543211 234467899999999999999888 678999999999


Q ss_pred             EeeCCCCCC---CcccCCCCCCCEeeecCCcCCcccc-------cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEE
Q 007371          175 CLDYCRLKD---IAIVGQLKKLEILILARSTIKQLPL-------EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEEL  244 (606)
Q Consensus       175 ~l~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~-------~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L  244 (606)
                      .+.+-.+..   ...+.+|++|++||+|......-+.       .-..|++||.||.++....+.+-+..+..-++|+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            998887765   4778889999999999874443221       123488888888887555555544445555566655


Q ss_pred             Ecc
Q 007371          245 YMG  247 (606)
Q Consensus       245 ~l~  247 (606)
                      .+-
T Consensus       281 ~~~  283 (699)
T KOG3665|consen  281 AAL  283 (699)
T ss_pred             hhh
Confidence            433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.12  E-value=1.9e-07  Score=88.58  Aligned_cols=149  Identities=17%  Similarity=0.045  Sum_probs=70.9

Q ss_pred             cCCCCCCEEecCCCccccccc----HHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCC
Q 007371          211 GQLTRLQLLDLSNCWLLEVIA----PNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEIL  286 (606)
Q Consensus       211 ~~L~~L~~L~l~~~~~~~~~p----~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  286 (606)
                      .+-++||++....|. ++.-+    ...+...+.|+.+.+..|.+....    .......+..+++|+.|++..|-++.-
T Consensus       154 ~~~~~Lrv~i~~rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~~eG----~~al~eal~~~~~LevLdl~DNtft~e  228 (382)
T KOG1909|consen  154 ASKPKLRVFICGRNR-LENGGATALAEAFQSHPTLEEVRLSQNGIRPEG----VTALAEALEHCPHLEVLDLRDNTFTLE  228 (382)
T ss_pred             CCCcceEEEEeeccc-cccccHHHHHHHHHhccccceEEEecccccCch----hHHHHHHHHhCCcceeeecccchhhhH
Confidence            344556666555533 22211    112445556666666655443221    123345566666666666666654311


Q ss_pred             CccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccc--ccccchhHHHhhccccceecccccCccccccc
Q 007371          287 PPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVS--ILQENDGTKMLLQRTEGLWLETLEGVQSVVHE  364 (606)
Q Consensus       287 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  364 (606)
                      ....                   +...++.+++|+.+++++|....  .......+....|+|+.|.+.+|....+-...
T Consensus       229 gs~~-------------------LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~  289 (382)
T KOG1909|consen  229 GSVA-------------------LAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA  289 (382)
T ss_pred             HHHH-------------------HHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH
Confidence            1100                   00112233344555555543322  22223333344577777877777654432111


Q ss_pred             cc-CCCCCCCCcEEEeecCC
Q 007371          365 LD-DGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       365 l~-~~~~l~~L~~L~l~~c~  383 (606)
                      +. +....|.|+.|.+.+|.
T Consensus       290 la~~~~ek~dL~kLnLngN~  309 (382)
T KOG1909|consen  290 LAACMAEKPDLEKLNLNGNR  309 (382)
T ss_pred             HHHHHhcchhhHHhcCCccc
Confidence            10 12357888888888886

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.10  E-value=2.7e-07  Score=95.74  Aligned_cols=173  Identities=21%  Similarity=0.196  Sum_probs=119.6

Q ss_pred             CCCeEEEecCCCCcccCC-cccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeC
Q 007371          100 KDPIAISLTYGGIQVLPE-RLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDY  178 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~  178 (606)
                      ..+..+++..|.+..+.. ...+.++..|++.+|.+..+...+ ..+.+|++|++++|.|+.+. .+..+..|+.|++.+
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~  149 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG  149 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccch-hhhhcchheecccccccccc-chhhccchhhheecc
Confidence            445556677777766444 337788888888888887776643 67899999999999988863 467788899999999


Q ss_pred             CCCCCCcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371          179 CRLKDIAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE  257 (606)
Q Consensus       179 ~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~  257 (606)
                      |.++.+..+..+.+|+.+++++|.+..+... ...+.+++.+.+.+|... .+..  +..+..+..+++..+.+...   
T Consensus       150 N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~--~~~~~~l~~~~l~~n~i~~~---  223 (414)
T KOG0531|consen  150 NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEG--LDLLKKLVLLSLLDNKISKL---  223 (414)
T ss_pred             CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccc--hHHHHHHHHhhcccccceec---
Confidence            9988877777799999999999988877553 578888888888885432 2221  33444444445555554332   


Q ss_pred             CCCccchHhhccCC--CCCEEEEeeCCCCCCC
Q 007371          258 GGSNASLVELERLT--KLATLEIEVADAEILP  287 (606)
Q Consensus       258 ~~~~~~~~~l~~l~--~L~~L~l~~~~~~~~~  287 (606)
                             ..+..+.  +|+.+++.++++..++
T Consensus       224 -------~~l~~~~~~~L~~l~l~~n~i~~~~  248 (414)
T KOG0531|consen  224 -------EGLNELVMLHLRELYLSGNRISRSP  248 (414)
T ss_pred             -------cCcccchhHHHHHHhcccCcccccc
Confidence                   2222222  2777777777776553

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.98  E-value=2.5e-06  Score=92.46  Aligned_cols=137  Identities=19%  Similarity=0.205  Sum_probs=90.1

Q ss_pred             CCCCcEEEeeCCcC-cc-CCcccc-CCCCCcEEEeeCCCCCC---CcccCCCCCCCEeeecCCcCCcccccccCCCCCCE
Q 007371          145 TEGLKVLNFTRIHF-SS-LPSSLG-CLINLQTLCLDYCRLKD---IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQL  218 (606)
Q Consensus       145 l~~L~~L~l~~~~l-~~-lp~~~~-~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~  218 (606)
                      -.+|+.|+++|... .. .|..++ .++.|+.|.+.+-.+..   -....+++||+.||+++++++.+ .++++|++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence            45678888888643 22 555554 46788888888876544   24455788888888888888877 78888888888


Q ss_pred             EecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          219 LDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       219 L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      |.+.+-.....-.-..+-+|++|+.||+|.........  -....++.-..+++||.|+.+++.+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~--ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTK--IIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchH--HHHHHHHhcccCccccEEecCCcchh
Confidence            88876443321111127788888888888765443321  11122334455788888888876653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=1.8e-05  Score=79.11  Aligned_cols=61  Identities=18%  Similarity=0.266  Sum_probs=40.2

Q ss_pred             CCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEe
Q 007371          316 KSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHI  388 (606)
Q Consensus       316 ~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~  388 (606)
                      .+.+++.|++++|.+ ..++.      ..++|++|.+.+|..++.+|..+.     ++|++|.+++|..+..+
T Consensus        50 ~~~~l~~L~Is~c~L-~sLP~------LP~sLtsL~Lsnc~nLtsLP~~LP-----~nLe~L~Ls~Cs~L~sL  110 (426)
T PRK15386         50 EARASGRLYIKDCDI-ESLPV------LPNELTEITIENCNNLTTLPGSIP-----EGLEKLTVCHCPEISGL  110 (426)
T ss_pred             HhcCCCEEEeCCCCC-cccCC------CCCCCcEEEccCCCCcccCCchhh-----hhhhheEccCccccccc
Confidence            356677777777643 33321      235788888888888777775442     58888888888766543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.94  E-value=8.9e-06  Score=53.92  Aligned_cols=36  Identities=31%  Similarity=0.453  Sum_probs=15.9

Q ss_pred             CCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCC
Q 007371          147 GLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLK  182 (606)
Q Consensus       147 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~  182 (606)
                      +|++|++++|.++++|..+++|++|++|++++|.++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            344455555544444444444444444444444433

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.85  E-value=3.6e-07  Score=94.46  Aligned_cols=123  Identities=24%  Similarity=0.254  Sum_probs=90.7

Q ss_pred             eecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCCcCC
Q 007371          127 LHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARSTIK  204 (606)
Q Consensus       127 L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~  204 (606)
                      .++++|....+..++ .-++.|+.|+|++|++++.- .+..|.+|++||+++|.+.. | -....+. |+.|++++|.++
T Consensus       169 a~fsyN~L~~mD~SL-qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~  245 (1096)
T KOG1859|consen  169 ASFSYNRLVLMDESL-QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALT  245 (1096)
T ss_pred             hhcchhhHHhHHHHH-HHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHHH
Confidence            334444444444443 56788999999999998864 67889999999999999887 4 2223333 999999999888


Q ss_pred             cccccccCCCCCCEEecCCCcccc--cccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          205 QLPLEIGQLTRLQLLDLSNCWLLE--VIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       205 ~lp~~i~~L~~L~~L~l~~~~~~~--~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      .+ .+|.+|.+|+.|++++|-..+  .+.+  ++.|..|+.|++.+|.+-..+
T Consensus       246 tL-~gie~LksL~~LDlsyNll~~hseL~p--LwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  246 TL-RGIENLKSLYGLDLSYNLLSEHSELEP--LWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hh-hhHHhhhhhhccchhHhhhhcchhhhH--HHHHHHHHHHhhcCCccccCH
Confidence            87 578999999999999864433  2222  678888999999998765443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.85  E-value=2.3e-05  Score=51.98  Aligned_cols=33  Identities=42%  Similarity=0.578  Sum_probs=16.9

Q ss_pred             CCCEeeecCCcCCcccccccCCCCCCEEecCCC
Q 007371          192 KLEILILARSTIKQLPLEIGQLTRLQLLDLSNC  224 (606)
Q Consensus       192 ~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~  224 (606)
                      +|++|++++|+++.+|+.+++|++|++|++++|
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence            455555555555555555555555555555554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=4.1e-06  Score=77.84  Aligned_cols=84  Identities=25%  Similarity=0.269  Sum_probs=58.9

Q ss_pred             hcCCCCCcEEEeeCCcCcc---CCccccCCCCCcEEEeeCCCCCC-Cccc-CCCCCCCEeeecCCcCC--cccccccCCC
Q 007371          142 FKGTEGLKVLNFTRIHFSS---LPSSLGCLINLQTLCLDYCRLKD-IAIV-GQLKKLEILILARSTIK--QLPLEIGQLT  214 (606)
Q Consensus       142 ~~~l~~L~~L~l~~~~l~~---lp~~~~~l~~L~~L~l~~~~~~~-~~~i-~~l~~L~~L~l~~~~l~--~lp~~i~~L~  214 (606)
                      .+...+++.+||.+|.|++   +...+.++++|++|+++.|++.. +.+. ..+.+|++|-+.++.+.  .....+..++
T Consensus        67 ~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP  146 (418)
T KOG2982|consen   67 GSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP  146 (418)
T ss_pred             HHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence            4567788888888888776   33445778888888888888766 4444 46678888888877544  4445566677


Q ss_pred             CCCEEecCCCc
Q 007371          215 RLQLLDLSNCW  225 (606)
Q Consensus       215 ~L~~L~l~~~~  225 (606)
                      +++.|+++.|+
T Consensus       147 ~vtelHmS~N~  157 (418)
T KOG2982|consen  147 KVTELHMSDNS  157 (418)
T ss_pred             hhhhhhhccch
Confidence            77777776653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.75  E-value=1.9e-06  Score=70.75  Aligned_cols=83  Identities=18%  Similarity=0.279  Sum_probs=43.4

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTI  203 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l  203 (606)
                      ...++++|.+.++|..+-.+++....|++++|.++++|..+..++.||.|+++.|.+.. |..+..|.+|-+|+..++.+
T Consensus        56 ~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~  135 (177)
T KOG4579|consen   56 TKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENAR  135 (177)
T ss_pred             EEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCcc
Confidence            33344444444555444444445555555555555555555555555555555555544 54455555555555555544


Q ss_pred             Cccc
Q 007371          204 KQLP  207 (606)
Q Consensus       204 ~~lp  207 (606)
                      ..+|
T Consensus       136 ~eid  139 (177)
T KOG4579|consen  136 AEID  139 (177)
T ss_pred             ccCc
Confidence            4444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.60  E-value=8.4e-05  Score=65.56  Aligned_cols=80  Identities=21%  Similarity=0.124  Sum_probs=35.3

Q ss_pred             CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC--ccccCCCCCcEEEeeCC
Q 007371          102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP--SSLGCLINLQTLCLDYC  179 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~  179 (606)
                      ...++++.|.+..++....++.|.+|.+++|.+..+.+.+-.-+++|..|.+.+|++..+-  ..+..++.|++|.+-+|
T Consensus        44 ~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~N  123 (233)
T KOG1644|consen   44 FDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGN  123 (233)
T ss_pred             cceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCC
Confidence            3344455555544444334444455555555444444444333444455555554443321  12233444444444444


Q ss_pred             CC
Q 007371          180 RL  181 (606)
Q Consensus       180 ~~  181 (606)
                      .+
T Consensus       124 pv  125 (233)
T KOG1644|consen  124 PV  125 (233)
T ss_pred             ch
Confidence            43

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=2.2e-05  Score=73.20  Aligned_cols=43  Identities=23%  Similarity=0.230  Sum_probs=21.1

Q ss_pred             cCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCccee
Q 007371          448 FNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEV  491 (606)
Q Consensus       448 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l  491 (606)
                      +|.+--|.+.. .++.++....-+..+|+|..|.+.+.|-...+
T Consensus       223 ~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  223 FPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             CCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            34444444443 34444433334455666666666665544433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.34  E-value=0.00037  Score=61.59  Aligned_cols=99  Identities=18%  Similarity=0.275  Sum_probs=57.7

Q ss_pred             ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccC-CCCCcEEEeeCCCCCC---CcccCCCCCCCEeee
Q 007371          123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGC-LINLQTLCLDYCRLKD---IAIVGQLKKLEILIL  198 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~-l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l  198 (606)
                      ....+++.+|.+..++.  |..++.|..|.+..|.|+.+-..+.. +++|..|.+.+|++..   ...+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            44455566666655554  56667777777777777665444433 3456777777666544   455556666666666


Q ss_pred             cCCcCCccc----ccccCCCCCCEEecCC
Q 007371          199 ARSTIKQLP----LEIGQLTRLQLLDLSN  223 (606)
Q Consensus       199 ~~~~l~~lp----~~i~~L~~L~~L~l~~  223 (606)
                      -+|.++.-.    ..+.++++|+.|++..
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            666555332    1345555566655544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.33  E-value=2.8e-05  Score=64.05  Aligned_cols=83  Identities=19%  Similarity=0.277  Sum_probs=76.0

Q ss_pred             CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371          100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD  177 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~  177 (606)
                      ..+...++++|.++++|...  ..+.+++|++.+|.+.++|.+ +..++.||.|+++.|.+...|..+..+.++-+|+..
T Consensus        53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~  131 (177)
T KOG4579|consen   53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP  131 (177)
T ss_pred             ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence            66888999999999999876  677999999999999999999 588999999999999999999999999999999999


Q ss_pred             CCCCCC
Q 007371          178 YCRLKD  183 (606)
Q Consensus       178 ~~~~~~  183 (606)
                      ++....
T Consensus       132 ~na~~e  137 (177)
T KOG4579|consen  132 ENARAE  137 (177)
T ss_pred             CCcccc
Confidence            987665

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.12  E-value=0.00011  Score=78.39  Aligned_cols=37  Identities=27%  Similarity=0.465  Sum_probs=17.7

Q ss_pred             ccceEeeccccccccccccccccccCCCcc-eEeeccCCCC
Q 007371          511 KLFKLRLTDLPKLKRFCNFTRNIIELPKLR-YLTIENCPDM  550 (606)
Q Consensus       511 ~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~-~L~i~~Cp~L  550 (606)
                      .+..+.+.+|++++.+..  .... ..... .+.+.+||.|
T Consensus       352 ~~~~~~~~~~~~l~~~~l--~~~~-~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  352 DLAELILRSCPKLTDLSL--SYCG-ISDLGLELSLRGCPNL  389 (482)
T ss_pred             hHhHHHHhcCCCcchhhh--hhhh-ccCcchHHHhcCCccc
Confidence            455555666666655533  1111 22222 3555666666

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.97  E-value=4.6e-05  Score=70.40  Aligned_cols=100  Identities=24%  Similarity=0.199  Sum_probs=52.1

Q ss_pred             ccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecC
Q 007371          121 CPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILAR  200 (606)
Q Consensus       121 l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~  200 (606)
                      +.+++.|++.++.+.++.-  ..+++.|++|.|+-|.|+.+                       ..+.++++|+.|+|..
T Consensus        18 l~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL-----------------------~pl~rCtrLkElYLRk   72 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSL-----------------------APLQRCTRLKELYLRK   72 (388)
T ss_pred             HHHhhhhcccCCCccHHHH--HHhcccceeEEeeccccccc-----------------------hhHHHHHHHHHHHHHh
Confidence            3455556666665555532  45566666666666655553                       3334444444444444


Q ss_pred             CcCCccc--ccccCCCCCCEEecCCCcccccccH----HHhhCCCCCCEEE
Q 007371          201 STIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAP----NVISKLSQLEELY  245 (606)
Q Consensus       201 ~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~----~~i~~l~~L~~L~  245 (606)
                      |.|..+-  ..+.++++|+.|.+..|...+.-+.    .++.-|++|++|+
T Consensus        73 N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   73 NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            4444332  2345566666666666554444332    2355666666665

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.90  E-value=5.1e-05  Score=70.11  Aligned_cols=107  Identities=27%  Similarity=0.306  Sum_probs=79.9

Q ss_pred             CCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCccccccc-HHHhhCCCCCCEEEc
Q 007371          168 LINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIA-PNVISKLSQLEELYM  246 (606)
Q Consensus       168 l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p-~~~i~~l~~L~~L~l  246 (606)
                      +.+.+.|+..||.+.++....+|+.|++|.|+-|+|+.+ ..+..+++|++|++..|. +..+. -..+.++++|+.|.+
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhh
Confidence            556788899999998888888999999999999999988 457899999999999864 33333 234788999999998


Q ss_pred             cCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371          247 GNSFSGWEKVEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      ..|.=.+...   .......++-|++|++|+=.
T Consensus        96 ~ENPCc~~ag---~nYR~~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen   96 DENPCCGEAG---QNYRRKVLRVLPNLKKLDNV  125 (388)
T ss_pred             ccCCcccccc---hhHHHHHHHHcccchhccCc
Confidence            8875433222   12233556777788877643

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.83  E-value=0.00015  Score=77.22  Aligned_cols=175  Identities=20%  Similarity=0.208  Sum_probs=112.5

Q ss_pred             hhccccceecccccCccc--ccccccCCCCCCCCcEEEeecC-CCceEeccccccccccccccccccchhhhhhhhhhhc
Q 007371          343 LLQRTEGLWLETLEGVQS--VVHELDDGEGFPRLKHLHVKSC-SEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIG  419 (606)
Q Consensus       343 ~l~~L~~L~l~~~~~~~~--~~~~l~~~~~l~~L~~L~l~~c-~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~  419 (606)
                      ..++|+.|.+.+|.....  +....   ...++|+.|++.+| ..........    .......++|+.           
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~----~~~~~~~~~L~~-----------  247 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALA---LKCPNLEELDLSGCCLLITLSPLLL----LLLLSICRKLKS-----------  247 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHH---hhCchhheecccCcccccccchhHh----hhhhhhcCCcCc-----------
Confidence            368999999999988876  32323   37899999999984 3222211000    000223345555           


Q ss_pred             cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccc
Q 007371          420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELIN  499 (606)
Q Consensus       420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~  499 (606)
                            |.+..|..+.+.....  -...+++|+.|.+.+|..+++..-......+++|++|+++.|..+.+-...     
T Consensus       248 ------l~l~~~~~isd~~l~~--l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~-----  314 (482)
T KOG1947|consen  248 ------LDLSGCGLVTDIGLSA--LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLE-----  314 (482)
T ss_pred             ------cchhhhhccCchhHHH--HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHH-----
Confidence                  9888887655432211  112368999999999998887755667788999999999999987442111     


Q ss_pred             cccCCCCCCCCccceEeecccc---ccccccccccccccC--CCcceEeeccCCCCcccc
Q 007371          500 ADKEHIGPLFPKLFKLRLTDLP---KLKRFCNFTRNIIEL--PKLRYLTIENCPDMETFI  554 (606)
Q Consensus       500 ~~~~~~~~~~~~L~~L~l~~c~---~L~~l~~~~~~~~~~--~~L~~L~i~~Cp~L~~l~  554 (606)
                          .....+|+|+.|.+..++   .++....  ......  -.+..+.+.+||+++.+-
T Consensus       315 ----~~~~~c~~l~~l~~~~~~~c~~l~~~~l--~~~~~~~~d~~~~~~~~~~~~l~~~~  368 (482)
T KOG1947|consen  315 ----ALLKNCPNLRELKLLSLNGCPSLTDLSL--SGLLTLTSDDLAELILRSCPKLTDLS  368 (482)
T ss_pred             ----HHHHhCcchhhhhhhhcCCCccHHHHHH--HHhhccCchhHhHHHHhcCCCcchhh
Confidence                113357777776665554   4666543  112222  278889999999998864

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.59  E-value=0.0035  Score=58.12  Aligned_cols=37  Identities=11%  Similarity=0.154  Sum_probs=24.3

Q ss_pred             cCCCCCcEEEeeCCcCcc-----CCccccCCCCCcEEEeeCC
Q 007371          143 KGTEGLKVLNFTRIHFSS-----LPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~  179 (606)
                      ..+..+..++|++|.|..     +...+.+-.+|+..+++.-
T Consensus        27 ~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~   68 (388)
T COG5238          27 EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA   68 (388)
T ss_pred             HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh
Confidence            347777888888887753     4445556666777666654

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.56  E-value=0.0011  Score=61.24  Aligned_cols=120  Identities=18%  Similarity=0.107  Sum_probs=54.7

Q ss_pred             CCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcC---C-ccc-------ccccCCCCCCEEecCCCcccccc
Q 007371          168 LINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTI---K-QLP-------LEIGQLTRLQLLDLSNCWLLEVI  230 (606)
Q Consensus       168 l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l---~-~lp-------~~i~~L~~L~~L~l~~~~~~~~~  230 (606)
                      +..+..+++++|.|..  .    ..|.+-.+|+..+++.-..   . .+|       +.+-++++|+..++++|.+....
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~  108 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEF  108 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCccc
Confidence            4445555555555443  1    3344445555555543211   1 222       22345555555555555544444


Q ss_pred             cHH---HhhCCCCCCEEEccCCCCCCccccCCCc------cchHhhccCCCCCEEEEeeCCCCCCCc
Q 007371          231 APN---VISKLSQLEELYMGNSFSGWEKVEGGSN------ASLVELERLTKLATLEIEVADAEILPP  288 (606)
Q Consensus       231 p~~---~i~~l~~L~~L~l~~~~~~~~~~~~~~~------~~~~~l~~l~~L~~L~l~~~~~~~~~~  288 (606)
                      |+.   .|.+-+.|.+|.+++|.......+ ..+      +......+-+.|+...+..|++...+.
T Consensus       109 ~e~L~d~is~~t~l~HL~l~NnGlGp~aG~-rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~  174 (388)
T COG5238         109 PEELGDLISSSTDLVHLKLNNNGLGPIAGG-RIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSK  174 (388)
T ss_pred             chHHHHHHhcCCCceeEEeecCCCCccchh-HHHHHHHHHHHHhhhccCCCceEEEeccchhccCcH
Confidence            332   234445566666555544322110 000      111233455666666666666655443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.53  E-value=0.00092  Score=61.77  Aligned_cols=104  Identities=24%  Similarity=0.302  Sum_probs=54.6

Q ss_pred             CCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC--CCCC--CcccCCCCCCCEeeecCCcCCcc--cccccCCCCCCE
Q 007371          145 TEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC--RLKD--IAIVGQLKKLEILILARSTIKQL--PLEIGQLTRLQL  218 (606)
Q Consensus       145 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~--~~~~--~~~i~~l~~L~~L~l~~~~l~~l--p~~i~~L~~L~~  218 (606)
                      +..|..|++.+..++.+ ..+-.|++|++|.++.|  .+..  +....++++|++|++++|+++.+  -..+..+.+|..
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~  120 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS  120 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence            34444444444433332 12334566666666666  3333  23334457777777777765521  123456666777


Q ss_pred             EecCCCccccc--ccHHHhhCCCCCCEEEccCC
Q 007371          219 LDLSNCWLLEV--IAPNVISKLSQLEELYMGNS  249 (606)
Q Consensus       219 L~l~~~~~~~~--~p~~~i~~l~~L~~L~l~~~  249 (606)
                      |++.+|.....  --..++.-+++|.+|+-...
T Consensus       121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            77777654331  11233566778887765443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.00059  Score=60.44  Aligned_cols=90  Identities=21%  Similarity=0.320  Sum_probs=64.7

Q ss_pred             ccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccc
Q 007371          451 LFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFT  530 (606)
Q Consensus       451 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~  530 (606)
                      ++.++-++| .+... ....+.++++++.|.+.+|..+.++.-..         ..+.+|+|+.|+|++||++++-..  
T Consensus       103 IeaVDAsds-~I~~e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~---------l~~~~~~L~~L~lsgC~rIT~~GL--  169 (221)
T KOG3864|consen  103 IEAVDASDS-SIMYE-GLEHLRDLRSIKSLSLANCKYFDDWCLER---------LGGLAPSLQDLDLSGCPRITDGGL--  169 (221)
T ss_pred             EEEEecCCc-hHHHH-HHHHHhccchhhhheeccccchhhHHHHH---------hcccccchheeeccCCCeechhHH--
Confidence            455666664 34444 33446778889999999999888754321         123689999999999999988754  


Q ss_pred             cccccCCCcceEeeccCCCCccc
Q 007371          531 RNIIELPKLRYLTIENCPDMETF  553 (606)
Q Consensus       531 ~~~~~~~~L~~L~i~~Cp~L~~l  553 (606)
                      .++..+++|+.|.|.+.|....+
T Consensus       170 ~~L~~lknLr~L~l~~l~~v~~~  192 (221)
T KOG3864|consen  170 ACLLKLKNLRRLHLYDLPYVANL  192 (221)
T ss_pred             HHHHHhhhhHHHHhcCchhhhch
Confidence            56778899999999888765544

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.27  E-value=0.0011  Score=58.72  Aligned_cols=67  Identities=21%  Similarity=0.270  Sum_probs=49.8

Q ss_pred             cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcc
Q 007371          420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLE  489 (606)
Q Consensus       420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~  489 (606)
                      +++++.|.+.+|..+.+|..+. .. +-.++|+.|+|++|+++++- ...++.++++|+.|.+.+.+.+.
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~-l~-~~~~~L~~L~lsgC~rIT~~-GL~~L~~lknLr~L~l~~l~~v~  190 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLER-LG-GLAPSLQDLDLSGCPRITDG-GLACLLKLKNLRRLHLYDLPYVA  190 (221)
T ss_pred             cchhhhheeccccchhhHHHHH-hc-ccccchheeeccCCCeechh-HHHHHHHhhhhHHHHhcCchhhh
Confidence            4445558999999988886555 22 25688999999999999887 55567788888888888765443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.25  E-value=0.0039  Score=57.76  Aligned_cols=115  Identities=22%  Similarity=0.220  Sum_probs=71.5

Q ss_pred             cCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCC--cCC-cccccccCCCCCCEEecCCCcc--cccccHHHhhCCCC
Q 007371          166 GCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARS--TIK-QLPLEIGQLTRLQLLDLSNCWL--LEVIAPNVISKLSQ  240 (606)
Q Consensus       166 ~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~--~l~-~lp~~i~~L~~L~~L~l~~~~~--~~~~p~~~i~~l~~  240 (606)
                      ..+..|+.|++.++.++....+-.|++|++|+++.|  ++. .++.-..++++|++|++++|+.  +.++++  +..+.+
T Consensus        40 d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcc
Confidence            345566666676666666666677788888888888  444 5555556678888888888753  345554  577777


Q ss_pred             CCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCC
Q 007371          241 LEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILP  287 (606)
Q Consensus       241 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  287 (606)
                      |..|++.+|......     ...-..+.-+++|+.|+-........|
T Consensus       118 L~~Ldl~n~~~~~l~-----dyre~vf~ll~~L~~LD~~dv~~~Ea~  159 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLD-----DYREKVFLLLPSLKYLDGCDVDGEEAP  159 (260)
T ss_pred             hhhhhcccCCccccc-----cHHHHHHHHhhhhccccccccCCcccc
Confidence            778887777654421     112234455566666665544443333

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.83  E-value=0.0042  Score=34.10  Aligned_cols=21  Identities=24%  Similarity=0.431  Sum_probs=14.4

Q ss_pred             CCCEeeecCCcCCcccccccC
Q 007371          192 KLEILILARSTIKQLPLEIGQ  212 (606)
Q Consensus       192 ~L~~L~l~~~~l~~lp~~i~~  212 (606)
                      +|++||+++|+++.+|.++++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.55  E-value=0.044  Score=46.30  Aligned_cols=101  Identities=16%  Similarity=0.265  Sum_probs=32.4

Q ss_pred             HhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCC
Q 007371          141 FFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRL  216 (606)
Q Consensus       141 ~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L  216 (606)
                      .|.++.+|+.+.+.. .+..++. .|.++.+|+.+.+..+ +..  -..+..+.+|+.+.+.. .+..++. .+..+++|
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            344444444444432 2333222 2334444444444432 222  13344444444444433 2333322 22334555


Q ss_pred             CEEecCCCcccccccHHHhhCCCCCCEEEcc
Q 007371          217 QLLDLSNCWLLEVIAPNVISKLSQLEELYMG  247 (606)
Q Consensus       217 ~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~  247 (606)
                      +.+.+..+  ...++...+.+. +|+.+.+.
T Consensus        84 ~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPSN--ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             CEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred             cccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence            55554331  223333334444 55555544

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.16  E-value=0.0088  Score=32.81  Aligned_cols=21  Identities=29%  Similarity=0.520  Sum_probs=14.6

Q ss_pred             CCcEEEeeCCcCccCCccccC
Q 007371          147 GLKVLNFTRIHFSSLPSSLGC  167 (606)
Q Consensus       147 ~L~~L~l~~~~l~~lp~~~~~  167 (606)
                      +|++|++++|.++.+|..|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            467777777777777766554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=95.15  E-value=0.086  Score=44.51  Aligned_cols=115  Identities=16%  Similarity=0.288  Sum_probs=60.0

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEe
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEIL  196 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L  196 (606)
                      .+.+|+.+.+.. ....+....|..+..|+.+.+..+ +..++. .+.++..++.+.+.. .+..  ...+..+.+|+.+
T Consensus        10 ~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   10 NCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             T-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            566788888764 466777777888888999988774 666444 567777888888865 3333  3567778888888


Q ss_pred             eecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCC
Q 007371          197 ILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL  241 (606)
Q Consensus       197 ~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L  241 (606)
                      ++..+ +..++. .+.+. +|+.+.+..  ....++...+.++++|
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~--~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS--NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT--B-SS----GGG-----
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC--CccEECCccccccccC
Confidence            88764 655554 34555 888887765  3445555556666555

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.14  E-value=0.037  Score=28.09  Aligned_cols=16  Identities=31%  Similarity=0.534  Sum_probs=7.8

Q ss_pred             CCCEeeecCCcCCccc
Q 007371          192 KLEILILARSTIKQLP  207 (606)
Q Consensus       192 ~L~~L~l~~~~l~~lp  207 (606)
                      +|++|++++|+++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            5666666666666554

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.19  E-value=0.06  Score=27.31  Aligned_cols=16  Identities=25%  Similarity=0.403  Sum_probs=6.3

Q ss_pred             CcceEeeccCCCCcccc
Q 007371          538 KLRYLTIENCPDMETFI  554 (606)
Q Consensus       538 ~L~~L~i~~Cp~L~~l~  554 (606)
                      +|+.|++++|. |+++|
T Consensus         2 ~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             T-SEEEETSS---SSE-
T ss_pred             ccCEEECCCCC-CCCCc
Confidence            45555555554 54443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.94  E-value=0.3  Score=27.85  Aligned_cols=21  Identities=29%  Similarity=0.369  Sum_probs=14.3

Q ss_pred             CCCCCEeeecCCcCCcccccc
Q 007371          190 LKKLEILILARSTIKQLPLEI  210 (606)
Q Consensus       190 l~~L~~L~l~~~~l~~lp~~i  210 (606)
                      +.+|++|++++|+++.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777776653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.94  E-value=0.3  Score=27.85  Aligned_cols=21  Identities=29%  Similarity=0.369  Sum_probs=14.3

Q ss_pred             CCCCCEeeecCCcCCcccccc
Q 007371          190 LKKLEILILARSTIKQLPLEI  210 (606)
Q Consensus       190 l~~L~~L~l~~~~l~~lp~~i  210 (606)
                      +.+|++|++++|+++.+|.++
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            356777777777777776653

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=88.70  E-value=0.011  Score=53.77  Aligned_cols=82  Identities=13%  Similarity=0.062  Sum_probs=48.5

Q ss_pred             cCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEec
Q 007371          143 KGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDL  221 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l  221 (606)
                      ..++...+||++.|.+..+-..++-+..|..|+++.+.+.. |..++.+..++.+++..|+.+..|.+.++++.++.++.
T Consensus        39 ~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            34555666666666555555555555556666666555555 55556666666666666666666666666666666655


Q ss_pred             CCC
Q 007371          222 SNC  224 (606)
Q Consensus       222 ~~~  224 (606)
                      .++
T Consensus       119 k~~  121 (326)
T KOG0473|consen  119 KKT  121 (326)
T ss_pred             ccC
Confidence            554

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=86.64  E-value=0.39  Score=27.47  Aligned_cols=16  Identities=25%  Similarity=0.453  Sum_probs=8.2

Q ss_pred             CccceEeecccccccc
Q 007371          510 PKLFKLRLTDLPKLKR  525 (606)
Q Consensus       510 ~~L~~L~l~~c~~L~~  525 (606)
                      |+|++|+|++|+++++
T Consensus         2 ~~L~~L~l~~C~~itD   17 (26)
T smart00367        2 PNLRELDLSGCTNITD   17 (26)
T ss_pred             CCCCEeCCCCCCCcCH
Confidence            4455555555555444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.09  E-value=0.026  Score=51.29  Aligned_cols=83  Identities=7%  Similarity=0.000  Sum_probs=47.0

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeee
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILIL  198 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l  198 (606)
                      .......|+++.+....+... |+.+..|..|+++.|.+..+|..++.+..++.+++..|..+. |.+.+..+++++++.
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            334444455444444333333 245555666666666666666666666666666666666555 666666666666666


Q ss_pred             cCCcC
Q 007371          199 ARSTI  203 (606)
Q Consensus       199 ~~~~l  203 (606)
                      .++.+
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            66543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=82.27  E-value=0.99  Score=25.66  Aligned_cols=19  Identities=32%  Similarity=0.560  Sum_probs=12.4

Q ss_pred             CCCcEEEeeCCcCccCCcc
Q 007371          146 EGLKVLNFTRIHFSSLPSS  164 (606)
Q Consensus       146 ~~L~~L~l~~~~l~~lp~~  164 (606)
                      .+|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566777777777666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=82.27  E-value=0.99  Score=25.66  Aligned_cols=19  Identities=32%  Similarity=0.560  Sum_probs=12.4

Q ss_pred             CCCcEEEeeCCcCccCCcc
Q 007371          146 EGLKVLNFTRIHFSSLPSS  164 (606)
Q Consensus       146 ~~L~~L~l~~~~l~~lp~~  164 (606)
                      .+|++|++++|.++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566777777777666654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	606
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-12
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-10
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-11
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-08
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-12
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-10
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-11
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-10
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-09
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-09
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-08
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-09
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-10
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-09
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-06
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-09
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-06
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-08
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-07
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	5e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-04
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 82.3 bits (204), Expect = 3e-17
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 9/113 (7%)

Query: 146 EGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILILARSTIK 204
            G   L    +     P     L +LQ + +D   L ++   + Q   LE L LAR+ ++
Sbjct: 81  PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR 140

Query: 205 QLPLEIGQLTRLQLLDLSNCWLLEVI--------APNVISKLSQLEELYMGNS 249
            LP  I  L RL+ L +  C  L  +        A      L  L+ L +  +
Sbjct: 141 ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 5e-16
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC-RLKDI-AIVGQLKKLEILILA-RSTIK 204
           LK L       S+L  ++  L  L+ L L  C  L++   I G    L+ LIL   S + 
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL 267

Query: 205 QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG 252
            LPL+I +LT+L+ LDL  C  L  + P++I++L     + +      
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRL-PSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.1 bits (193), Expect = 8e-16
 Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 12/112 (10%)

Query: 148 LKVLNFTRI-HFSSLPSSLG---------CLINLQTLCLDYCRLKDI-AIVGQLKKLEIL 196
           L+ L+       + LP  L           L+NLQ+L L++  ++ + A +  L+ L+ L
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSL 211

Query: 197 ILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            +  S +  L   I  L +L+ LDL  C  L    P +    + L+ L + +
Sbjct: 212 KIRNSPLSALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKD 262

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 77.3 bits (191), Expect = 1e-15
 Identities = 28/148 (18%), Positives = 54/148 (36%), Gaps = 8/148 (5%)

Query: 148 LKVLNFTRIHFSSLPSSLGCL--INLQTLCLDYCRLKDI-AIVGQLKKLEILILARSTIK 204
            ++   T     +    L          L L    L        +L  L+ + +  + + 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 205 QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV--EGGSNA 262
           +LP  + Q   L+ L L+   L  +  P  I+ L++L EL +  +     ++     S  
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLRAL--PASIASLNRLRELSI-RACPELTELPEPLASTD 174

Query: 263 SLVELERLTKLATLEIEVADAEILPPNF 290
           +  E + L  L +L +E      LP + 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASI 202

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 148 LKVLNFTRI-HFSSLPSSLGCLINLQTLCLDYC-RLKDI-AIVGQLKKLEILILAR-STI 203
           L+ L+        + P   G    L+ L L  C  L  +   + +L +LE L L     +
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 204 KQLPLEIGQLTRLQLLDLSNCWLLE 228
            +LP  I QL    ++ +      +
Sbjct: 291 SRLPSLIAQLPANCIILVPPHLQAQ 315

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 148 LKVLNFTRI-HFSSLPSSLGCLINLQTLCLDYC-RLKDI-AIVGQLKKLEILILARSTIK 204
           LK L      +  +LP  +  L  L+ L L  C  L  + +++ QL    I+++      
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

Query: 205 QLP 207
           QL 
Sbjct: 315 QLD 317

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 80.3 bits (197), Expect = 8e-16
 Identities = 113/679 (16%), Positives = 214/679 (31%), Gaps = 237/679 (34%)

Query: 11  SIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLR--IDMSCQKNF----- 63
           SI+++E E+D +      +  KD      R    L S+++++++  ++   + N+     
Sbjct: 44  SILSKE-EIDHI------IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96

Query: 64  PIDALPRKEAL--QLFEK---RMFNIP------NVADLEKKMEETIRK-----DPIAISL 107
           PI    R+ ++  +++ +   R++N        NV+ L+  ++  +R+      P    L
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK--LRQALLELRPAKNVL 154

Query: 108 TYG----GIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKV--LNFTRIHFSSL 161
             G    G   +        L++             +  +     K+  LN    +    
Sbjct: 155 IDGVLGSGKTWV-------ALDVC----------LSYKVQCKMDFKIFWLNLKNCN---- 193

Query: 162 PSSLGCLINLQTLCL----DYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQ 217
            S    L  LQ L      ++    D +   +L+   I    R  +K  P E        
Sbjct: 194 -SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC------ 246

Query: 218 LLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE 277
           LL L N    +                   N+F+   K+       L+     T   T  
Sbjct: 247 LLVLLNVQNAKAW-----------------NAFNLSCKI-------LL-----T---TRF 274

Query: 278 IEVADAEILPPNFVSVELQRYRIRIGDES----EDEFDPLLVK------SEAPRLMMLKG 327
            +V D       F+S       I +   S     DE   LL+K       + PR ++   
Sbjct: 275 KQVTD-------FLSAA-TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326

Query: 328 LEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILH 387
             ++SI+ E       ++      L T +  + V  +        +L  + ++S   +L 
Sbjct: 327 PRRLSIIAE------SIRD----GLATWDNWKHVNCD--------KLTTI-IESSLNVL- 366

Query: 388 IVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFP--RLKEIWHGQALPV 445
                  E  E R           K ++ +  F    H+     P   L  IW       
Sbjct: 367 -------EPAEYR-----------KMFDRLSVFPPSAHI-----PTILLSLIWFDVIKSD 403

Query: 446 SFFNNLFDLVVDDCTNMSSAI--PANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADK- 502
                   +VV+     S     P      + ++ YLE++     E  LH   +++    
Sbjct: 404 V------MVVVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALH-RSIVDHYNI 455

Query: 503 -------------------EHIG------------PLFPKLF--------KLRLTDLPKL 523
                               HIG             LF  +F        K+R       
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTA-- 513

Query: 524 KRFCNFTRNIIE-LPKLR----YLTIENCP-------DMETFISNSTSVLHMTADNKEAQ 571
               N + +I+  L +L+    Y+  +N P        +  F+      L  +      +
Sbjct: 514 ---WNASGSILNTLQQLKFYKPYIC-DNDPKYERLVNAILDFLPKIEENLICSKYTDLLR 569

Query: 572 -KLKSEKNLLVAD---QIQ 586
             L +E   +  +   Q+Q
Sbjct: 570 IALMAEDEAIFEEAHKQVQ 588

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.8 bits (179), Expect = 1e-13
 Identities = 16/132 (12%), Positives = 44/132 (33%), Gaps = 5/132 (3%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
              +     + + +  ++  L  L+   +         I    +        +       
Sbjct: 185 DTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT--ED 242

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVE 266
           L+   L  L  +++ NC  L  + P  +  L +++ + +  N     E+++     +L +
Sbjct: 243 LKWDNLKDLTDVEVYNCPNLTKL-PTFLKALPEMQLINVACNRGISGEQLKDDWQ-ALAD 300

Query: 267 LERLTKLATLEI 278
                K+  + I
Sbjct: 301 APVGEKIQIIYI 312

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 69.3 bits (170), Expect = 1e-12
 Identities = 22/140 (15%), Positives = 46/140 (32%), Gaps = 15/140 (10%)

Query: 148 LKVLNFTRIHFSSLPSSL-GCLINLQTLCLDYCRLKDIAI---VGQLKKLEILILAR--- 200
           L  LN      + +P++  G    ++ L   + +LK I        +  +  +  +    
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 201 -----STIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWE 254
                     L     +   +  ++LSN  + +     + S  S L  + + GN  +   
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFP-KELFSTGSPLSSINLMGNMLTEIP 473

Query: 255 K-VEGGSNASLVELERLTKL 273
           K      N +      LT +
Sbjct: 474 KNSLKDENENFKNTYLLTSI 493

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 65.1 bits (159), Expect = 4e-11
 Identities = 21/134 (15%), Positives = 47/134 (35%), Gaps = 15/134 (11%)

Query: 148 LKVLNFTRIHFSSLP---------SSLGCLINLQTLCLDYCRLKDIAI---VGQLKKLEI 195
           ++++N       S           +       +Q + + Y  LK   +   + ++KKL +
Sbjct: 275 MQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGM 334

Query: 196 LILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGW- 253
           L    + ++      G   +L  L+L+   + E+   N      Q+E L    N      
Sbjct: 335 LECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIP-ANFCGFTEQVENLSFAHNKLKYIP 393

Query: 254 EKVEGGSNASLVEL 267
              +  S + +  +
Sbjct: 394 NIFDAKSVSVMSAI 407

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 11/107 (10%)

Query: 157 HFSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILA--------RSTIKQL 206
           +F  L  +    IN+ ++ L   ++      +      L  + L         ++++K  
Sbjct: 421 NFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE 480

Query: 207 PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
                    L  +DL    L ++      + L  L  + +  NSFS 
Sbjct: 481 NENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK 527

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.8 bits (153), Expect = 2e-10
 Identities = 15/100 (15%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 158 FSSLPSSLGCLINLQTLCLDYCRLKDI---AIVGQLKKLEILILARSTIKQLPLEIGQLT 214
                 +      L ++ L + +L  +        L  L  + L+ ++  + P +    +
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536

Query: 215 RLQLLDLSNCW------LLEVIAPNVISKLSQLEELYMGN 248
            L+   + N         L    P  I+    L +L +G+
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREW-PEGITLCPSLTQLQIGS 575

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.4 bits (152), Expect = 3e-10
 Identities = 21/145 (14%), Positives = 46/145 (31%), Gaps = 23/145 (15%)

Query: 145 TEGLKVLNFTRIH-FSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILAR- 200
            E  +  N      + +       L +L  + +  C         +  L +++++ +A  
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN 283

Query: 201 --STIKQLPL------EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFS 251
              + +QL        +     ++Q++ +    L        + K+ +L  L    N   
Sbjct: 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLE 343

Query: 252 GWEKVEGGSNASLVELERLTKLATL 276
           G           L       KLA+L
Sbjct: 344 G----------KLPAFGSEIKLASL 358

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 62.0 bits (151), Expect = 3e-10
 Identities = 23/136 (16%), Positives = 52/136 (38%), Gaps = 11/136 (8%)

Query: 148 LKVLNFTRIHFSSL--PSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTI 203
           ++++     +  +    +SL  +  L  L   Y +L+    A  G   KL  L LA + I
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-GSEIKLASLNLAYNQI 365

Query: 204 KQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSN 261
            ++P    G   +++ L  ++  L  +        +S +  +    N       V+G + 
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGS---VDGKNF 422

Query: 262 ASL-VELERLTKLATL 276
             L     +   ++++
Sbjct: 423 DPLDPTPFKGINVSSI 438

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 3e-07
 Identities = 18/153 (11%), Positives = 44/153 (28%), Gaps = 25/153 (16%)

Query: 148 LKVLN-----FTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILAR-- 200
           L+VL               P  +   ++ +         +    V    + +   L +  
Sbjct: 107 LEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQK-TFVDYDPREDFSDLIKDC 165

Query: 201 ----STIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEK 255
                  K +        +   +   +  +  V     + +L++L + YM  + F     
Sbjct: 166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITFV--SKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 256 VEGGSNASL----------VELERLTKLATLEI 278
            E   N +           ++ + L  L  +E+
Sbjct: 224 CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 8/140 (5%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVG---QLKK 192
                   GT  LK L+ +     ++ S+   L  L+ L   +  LK ++       L+ 
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 127

Query: 193 LEILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSF 250
           L  L ++ +  +     I   L+ L++L ++     E   P++ ++L  L  L +     
Sbjct: 128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 251 SGWEKVEGGSNASLVELERL 270
               ++   +  SL  L+ L
Sbjct: 188 E---QLSPTAFNSLSSLQVL 204

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 58.1 bits (141), Expect = 2e-09
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 147 GLKVLNFTRIHFSSLPSS-LGCLINLQTLCLDYCRLKDIAIVGQ----LKKLEILILARS 201
               L        SLP      L  L  L L    L       Q       L+ L L+ +
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            +  +      L +L+ LD  +  L ++   +V   L  L  L + +
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 11/136 (8%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSS--LGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILI 197
           F G E L+ L+F   +   +        L NL  L + +   +     I   L  LE+L 
Sbjct: 97  FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 156

Query: 198 LAR-STIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWE 254
           +A  S  +    +I  +L  L  LDLS C  LE ++P   + LS L+ L M  N+F    
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFF--- 212

Query: 255 KVEGGSNASLVELERL 270
            ++      L  L+ L
Sbjct: 213 SLDTFPYKCLNSLQVL 228

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 21/113 (18%), Positives = 44/113 (38%), Gaps = 6/113 (5%)

Query: 141 FFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIAIVG---QLKKLEIL 196
            F     L  L+ +  H     +     L +L+ L +     ++  +     +L+ L  L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 197 ILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            L++  ++QL       L+ LQ+L++S+      +       L+ L+ L    
Sbjct: 181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSL 232

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.1 bits (167), Expect = 3e-12
 Identities = 26/121 (21%), Positives = 49/121 (40%), Gaps = 9/121 (7%)

Query: 136 QVSDHFFKGTEGLKVLNF--TRIHFSSLPSSLGCLINLQTLCLDYCRLKDIA--IVGQLK 191
            +    FK    L++L+   TR+      S    L  L+ L L +  L   +  +   L 
Sbjct: 390 SLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLP 449

Query: 192 KLEILILARSTIKQLPLE----IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG 247
            L+ L L  +   +  ++    +  L RL++L LS C  L  I  +  + L  +  + + 
Sbjct: 450 ALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLS 508

Query: 248 N 248
           +
Sbjct: 509 H 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.3 bits (157), Expect = 6e-11
 Identities = 19/104 (18%), Positives = 43/104 (41%), Gaps = 3/104 (2%)

Query: 148 LKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILILARSTIKQ 205
           ++ +N  + +F ++  ++  C   LQ L L    L ++ + +  L  L+ L+L+ +  + 
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFEN 315

Query: 206 LP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           L  +       L  L +        +    +  L  L EL + +
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.6 bits (145), Expect = 2e-09
 Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 7/120 (5%)

Query: 136 QVSDHFFKGTEGLKVLNFTR--IHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQ---- 189
            +          L  L+              L  L NL+ L L +  ++           
Sbjct: 315 NLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

Query: 190 LKKLEILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           L  L+ L L+ +    L  E   +  +L+LLDL+   L    A +    L  L+ L + +
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-09
 Identities = 26/137 (18%), Positives = 46/137 (33%), Gaps = 12/137 (8%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILIL 198
           F     L  L+ TR     +   +      L TL L    L  +A   +   K L+ L  
Sbjct: 53  FSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112

Query: 199 ARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKV 256
            ++ I  +  + +     L+ L L +   +  I         +L+ L    N+     K 
Sbjct: 113 IQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAIHYLSK- 170

Query: 257 EGGSNASLVELERLTKL 273
                  +  L++ T L
Sbjct: 171 -----EDMSSLQQATNL 182

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 58.9 bits (143), Expect = 3e-09
 Identities = 23/114 (20%), Positives = 41/114 (35%), Gaps = 5/114 (4%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDI--AIVGQLKK 192
            + +  F+    L  L  T      +   +L     L+ L      +  I    +   K 
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 193 LEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELY 245
           LE L L  + I  + L +     +L++LD  N   +  ++   +S L Q   L 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQATNLS 183

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSL----PSSLGCLINLQTLCLDYCRLKDIA--IVGQL 190
            S+  F G   L+ LN    HF        +SL  L  L+ L L +C L  I       L
Sbjct: 440 SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSL 499

Query: 191 KKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNS 249
           K +  + L+ + +    +E     +   L+L++   + +I P+++  LSQ   + +  N 
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIYLNLASN-HISIILPSLLPILSQQRTINLRQNP 558

Query: 250 FSG 252
              
Sbjct: 559 LDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 29/142 (20%), Positives = 55/142 (38%), Gaps = 8/142 (5%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKDIA--IVGQLKK 192
            +++    G + LK L F +   SS+    L     L++L L    +  I        +K
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 193 LEILILARSTIKQLPLE-IGQLTRLQL--LDLSNCWLLEVIAPNVISKLSQLEELYMGNS 249
           L++L    + I  L  E +  L +     L+L+    +  I P      +  + L  G +
Sbjct: 155 LKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-DIAGIEPG-AFDSAVFQSLNFGGT 212

Query: 250 FSGWEKVEGGSNASLVELERLT 271
            +     +G  N+++  L   T
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGT 234

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.1 bits (167), Expect = 4e-12
 Identities = 22/116 (18%), Positives = 47/116 (40%), Gaps = 5/116 (4%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI---AIVGQLKKLEILIL 198
             GT  LK L+ +     ++ S+   L  L+ L   +  LK +   ++   L+ L  L +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 199 ARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
           + +  +         L+ L++L ++     E   P++ ++L  L  L +       
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 484

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 1e-11
 Identities = 69/461 (14%), Positives = 136/461 (29%), Gaps = 71/461 (15%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKDIA--IVGQLKK 192
            +  + F     L+VL+ +R    ++   +   L +L TL L    ++ +A      L  
Sbjct: 42  HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101

Query: 193 LEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSF 250
           L+ L+   + +  L    IG L  L+ L++++  +     P   S L+ LE L +  N  
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 251 SGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPP----------NFVSVELQR--- 297
                 +      +  L     L+   +                    NF S+ + +   
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 298 ---YRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLW--- 351
                + +      EF       E      L+GL  ++I  E     +     + +    
Sbjct: 222 QGLAGLEVHRLVLGEFR-NEGNLEKFDKSALEGLCNLTIE-EFRLAYLDYYLDDIIDLFN 279

Query: 352 ----LETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLN 407
               + +   V   +  + D       +HL + +C           +    L        
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCK-FGQFPTLKLKSLKRLTFTSNKGG 338

Query: 408 STIQKCYEEM----------IGFRDIIHLQLSHFPRLKEIW----HGQALPVSFFN--NL 451
           +   +               + F+            LK +         +  +F     L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398

Query: 452 FDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPK 511
             L      N+      ++   L NL+YL++ +        H     N        L   
Sbjct: 399 EHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-------HTRVAFN---GIFNGL-SS 446

Query: 512 LFKLRLTDLPKLKRFCNFTRNIIE-----LPKLRYLTIENC 547
           L  L++          +F  N +      L  L +L +  C
Sbjct: 447 LEVLKMAG-------NSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 61.2 bits (149), Expect = 5e-10
 Identities = 32/168 (19%), Positives = 53/168 (31%), Gaps = 9/168 (5%)

Query: 105 ISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSS 164
            SL    I+ + +       + L        Q      K    LK L FT     +  S 
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSE 343

Query: 165 LGCLINLQTLCLDYCRLKDIAIV----GQLKKLEILILARSTIKQLPLEIGQLTRLQLLD 220
           +  L +L+ L L    L               L+ L L+ + +  +      L +L+ LD
Sbjct: 344 VD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 221 LSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVEL 267
             +  L ++   +V   L  L  L +                +SL  L
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 30/120 (25%), Positives = 46/120 (38%), Gaps = 6/120 (5%)

Query: 139 DHFFKGTEGLKVLNFTRIHFSS--LPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLE 194
           +  F G   L+VL      F    LP     L NL  L L  C+L+ +       L  L+
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 195 ILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
           +L ++ +    L       L  LQ+LD S   ++      +    S L  L +  N F+ 
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 25/158 (15%), Positives = 39/158 (24%), Gaps = 29/158 (18%)

Query: 124 LELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-------PSSLGCLINLQTLCL 176
             L+  E      +        EGL  L       + L            CL N+ +  L
Sbjct: 230 HRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSL 289

Query: 177 DYCRLKDIAIVGQLKKLEILILARSTIKQLP--------------------LEIGQLTRL 216
               ++ +         + L L      Q P                         L  L
Sbjct: 290 VSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349

Query: 217 QLLDLSNCWL-LEVIAPNVISKLSQLEELYM-GNSFSG 252
           + LDLS   L  +          + L+ L +  N    
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 67.7 bits (166), Expect = 4e-12
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           +  L   R+   S+   +  L NL  +     +L DI  +  L KL  +++  + I  + 
Sbjct: 48  VTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT 106

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVE 266
             +  LT L  L L N  + ++     +  L+ L  L +  N+ S            +  
Sbjct: 107 -PLANLTNLTGLTLFNNQITDIDP---LKNLTNLNRLELSSNTIS-----------DISA 151

Query: 267 LERLTKLATLEI 278
           L  LT L  L  
Sbjct: 152 LSGLTSLQQLSF 163

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.1 bits (162), Expect = 1e-11
 Identities = 31/150 (20%), Positives = 56/150 (37%), Gaps = 17/150 (11%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARS 201
                 L  L+      S+L   L  L  L  L L   ++ +I+ +  L  L  L L  +
Sbjct: 239 LASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNEN 297

Query: 202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGS 260
            ++ +   I  L  L  L L    + ++     +S L++L+ L+   N  S    +   +
Sbjct: 298 QLEDIS-PISNLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDVSSLANLT 353

Query: 261 N-----------ASLVELERLTKLATLEIE 279
           N           + L  L  LT++  L + 
Sbjct: 354 NINWLSAGHNQISDLTPLANLTRITQLGLN 383

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 64.6 bits (158), Expect = 4e-11
 Identities = 37/143 (25%), Positives = 55/143 (38%), Gaps = 17/143 (11%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L+ L  T    S +   LG L NL  L L+  +LKDI  +  L  L  L LA + I  L 
Sbjct: 201 LESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA 259

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSN----- 261
             +  LT+L  L L    +  +     ++ L+ L  L +  N       +    N     
Sbjct: 260 -PLSGLTKLTELKLGANQISNISP---LAGLTALTNLELNENQLEDISPISNLKNLTYLT 315

Query: 262 ------ASLVELERLTKLATLEI 278
                 + +  +  LTKL  L  
Sbjct: 316 LYFNNISDISPVSSLTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 24/132 (18%), Positives = 50/132 (37%), Gaps = 17/132 (12%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
                  + + +   S    L  + TL  D   +K I  V  L  L  +  + + +  + 
Sbjct: 26  KMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVE 266
             +  LT+L  + ++N  + ++     ++ L+ L  L +  N  +            +  
Sbjct: 85  -PLKNLTKLVDILMNNNQIADITP---LANLTNLTGLTLFNNQIT-----------DIDP 129

Query: 267 LERLTKLATLEI 278
           L+ LT L  LE+
Sbjct: 130 LKNLTNLNRLEL 141

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 61.5 bits (150), Expect = 3e-10
 Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 16/130 (12%)

Query: 162 PSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDL 221
              L  L  L+ L +   ++ DI+++ +L  LE LI   + I  +   +G LT L  L L
Sbjct: 170 LKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDIT-PLGILTNLDELSL 228

Query: 222 SNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEG---------GSN--ASLVELER 269
           +     ++     ++ L+ L +L +  N  S    + G         G+N  +++  L  
Sbjct: 229 NGN---QLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAG 285

Query: 270 LTKLATLEIE 279
           LT L  LE+ 
Sbjct: 286 LTALTNLELN 295

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 60.0 bits (146), Expect = 9e-10
 Identities = 35/133 (26%), Positives = 51/133 (38%), Gaps = 18/133 (13%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  L       + +   L  L NL  L L    + DI+ +  L  L+ L          P
Sbjct: 114 LTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKP 172

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG-NSFSGWEKVEGGSNASLVE 266
           L    LT L+ LD+S+    +V   +V++KL+ LE L    N  S            +  
Sbjct: 173 L--ANLTTLERLDISSN---KVSDISVLAKLTNLESLIATNNQIS-----------DITP 216

Query: 267 LERLTKLATLEIE 279
           L  LT L  L + 
Sbjct: 217 LGILTNLDELSLN 229

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 21/140 (15%), Positives = 53/140 (37%), Gaps = 6/140 (4%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  L         +   +  L NL  L L +  + DI+ V  L KL+ L    + +  + 
Sbjct: 289 LTNLELNENQLEDISP-ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVS 347

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVE 266
             +  LT +  L   +  + ++     ++ L+++ +L +   +++        + +    
Sbjct: 348 -SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQAWTNAPVNYKANVSIPNT 403

Query: 267 LERLTKLATLEIEVADAEIL 286
           ++ +T        ++D    
Sbjct: 404 VKNVTGALIAPATISDGGSY 423

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 55.7 bits (135), Expect = 2e-08
 Identities = 22/117 (18%), Positives = 40/117 (34%), Gaps = 16/117 (13%)

Query: 163 SSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLS 222
            +   L       L    + D      L ++  L   R  IK +   +  L  L  ++ S
Sbjct: 18  FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFS 76

Query: 223 NCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVELERLTKLATLEI 278
           N  L ++     +  L++L ++ M  N  +            +  L  LT L  L +
Sbjct: 77  NNQLTDITP---LKNLTKLVDILMNNNQIA-----------DITPLANLTNLTGLTL 119

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 51.5 bits (124), Expect = 5e-07
 Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 3/98 (3%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L+ L F     S + S L  L N+  L   + ++ D+  +  L ++  L L        P
Sbjct: 333 LQRLFFYNNKVSDVSS-LANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAP 391

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELY 245
           +       +     +    L  IAP  IS      E  
Sbjct: 392 VNYKANVSIPNTVKNVTGAL--IAPATISDGGSYTEPD 427

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 66.8 bits (164), Expect = 5e-12
 Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 29/229 (12%)

Query: 63  FPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCP 122
           FP   L       L +  + ++    +LE      I K    + +    +  +       
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQEELES-----ITK----LVVAGEKVASIQGIEYLT 66

Query: 123 CLELLHTEGDGSMQVSD-HFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRL 181
            LE L+  G    Q++D         L  L       + + + L  L NL+ L L+   +
Sbjct: 67  NLEYLNLNG---NQITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNI 122

Query: 182 KDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL 241
            DI+ +  L K+  L L  +        +  +T L  L ++   + +V     I+ L+ L
Sbjct: 123 SDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP---IANLTDL 179

Query: 242 EELYMG-NSFSGWEKVEG---------GSN--ASLVELERLTKLATLEI 278
             L +  N       +             N    +  +  +T+L +L+I
Sbjct: 180 YSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKI 228

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 61.0 bits (149), Expect = 3e-10
 Identities = 22/126 (17%), Positives = 55/126 (43%), Gaps = 10/126 (7%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L          + +   +  +  L +L +   ++ D++ +  L +L  L +  + I  + 
Sbjct: 201 LHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDIN 259

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVEL 267
             +  LT+L++L++ +  + ++     ++ LSQL  L++ N+     ++       +  L
Sbjct: 260 -AVKDLTKLKMLNVGSNQISDISV---LNNLSQLNSLFLNNN-----QLGNEDMEVIGGL 310

Query: 268 ERLTKL 273
             LT L
Sbjct: 311 TNLTTL 316

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 5/102 (4%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  L       S + + +  L  L+ L +   ++ DI+++  L +L  L L  + +    
Sbjct: 245 LTWLEIGTNQISDINA-VKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNED 303

Query: 208 LE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           +E IG LT L  L LS   + ++     ++ LS+++     N
Sbjct: 304 MEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 55.2 bits (134), Expect = 2e-08
 Identities = 21/101 (20%), Positives = 42/101 (41%), Gaps = 5/101 (4%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  L+        + S L  L +L        ++ DI  V  + +L  L +  + I  L 
Sbjct: 179 LYSLSLNYNQIEDI-SPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLS 237

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
             +  L++L  L++     +  I    +  L++L+ L +G+
Sbjct: 238 -PLANLSQLTWLEIGTN-QISDINA--VKDLTKLKMLNVGS 274

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 2e-06
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 16/109 (14%)

Query: 171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI 230
             TL      +  I     L +    +L ++++  +     +L  +  L ++   +  + 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVV-TQEELESITKLVVAGEKVASIQ 60

Query: 231 APNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVELERLTKLATLEI 278
               I  L+ LE L + GN  +            +  L  L KL  L I
Sbjct: 61  G---IEYLTNLEYLNLNGNQIT-----------DISPLSNLVKLTNLYI 95

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 74/444 (16%), Positives = 134/444 (30%), Gaps = 77/444 (17%)

Query: 136 QVSDHFFKGTEGLKVLNFT--RIHFSSLPSSLGCLINLQTLCLDYCRLKDIA--IVGQLK 191
            V+   F   E L++L         +    +   L NL+ L L   ++  +       L 
Sbjct: 38  TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97

Query: 192 KLEILILARSTIKQLPLE---IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-G 247
            L  L L    +    L+      L  L  LDLS   +  +       KL+ L+ +    
Sbjct: 98  HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSS 157

Query: 248 NSFSGWEK--VEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRI---RI 302
           N      +  +E     +L     L   +       D       F ++ L+   +     
Sbjct: 158 NQIFLVCEHELEPLQGKTLSFF-SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGW 216

Query: 303 GDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVV 362
             +    F   + KS+A  L++   +        ++          GL   ++       
Sbjct: 217 TVDITGNFSNAISKSQAFSLILAHHIMGAG-FGFHNIKDPDQNTFAGLARSSVR------ 269

Query: 363 HELD---------DGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKC 413
             LD         +   F  LK L      ++L++                N  + I   
Sbjct: 270 -HLDLSHGFVFSLNSRVFETLKDL------KVLNL--------------AYNKINKIAD- 307

Query: 414 YEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMS-SAIPANLLR 472
            E   G  ++  L LS+   L E+        S F  L  +   D      + I     +
Sbjct: 308 -EAFYGLDNLQVLNLSYN-LLGEL------YSSNFYGLPKVAYIDLQKNHIAIIQDQTFK 359

Query: 473 CLNNLVYL--------EVRNCDSLEEV-LHLEELINADKEHIGPLFPKLFKLRLTDLPKL 523
            L  L  L         +    S+ ++ L   +L+   K ++      L + RL +L  L
Sbjct: 360 FLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419

Query: 524 KRFCNFTRNIIELPKLRYLTIENC 547
                       +P L+ L +   
Sbjct: 420 YFLLR-------VPHLQILILNQN 436

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 148 LKVLNFTRIHFSSLP--SSLGCLINLQTLCLDYCRLKDI---AIVGQLKKLEILILARST 202
             +++ +     +L     L  + +LQ L L+  R           +   LE L L  + 
Sbjct: 403 ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENM 462

Query: 203 IKQLPLE------IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           ++              L+ LQ+L L++   L  + P V S L+ L  L + +
Sbjct: 463 LQLAWETELCWDVFEGLSHLQVLYLNHN-YLNSLPPGVFSHLTALRGLSLNS 513

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.8 bits (132), Expect = 7e-08
 Identities = 25/158 (15%), Positives = 54/158 (34%), Gaps = 20/158 (12%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIAIVGQLKKL- 193
           ++    F G   +  ++  + H + +   +   L  LQTL L    L  I  +  +  + 
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIF 387

Query: 194 ----------------EILILARSTIKQLPLE--IGQLTRLQLLDLSNCWLLEVIAPNVI 235
                            ++ L+ + ++ L +   + ++  LQ+L L+             
Sbjct: 388 LSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447

Query: 236 SKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKL 273
           S+   LE+L++G +                 L  L  L
Sbjct: 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVL 485

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 54.0 bits (130), Expect = 1e-07
 Identities = 59/409 (14%), Positives = 135/409 (33%), Gaps = 77/409 (18%)

Query: 149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIKQL 206
           ++  +   + + +P  L      + L L +  ++ +  +    L++L++L L        
Sbjct: 7   RIAFYRFCNLTQVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT 63

Query: 207 --PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASL 264
                   L  L++LDL +   +  + P+    L  L EL +         ++ G   +L
Sbjct: 64  IDKEAFRNLPNLRILDLGSS-KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 265 VELERLT----KLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAP 320
             L RL     ++ +L +  +  ++   +  S++    +I +  E               
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKL--NSLKSIDFSSNQIFLVCEH-------------- 166

Query: 321 RLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVK 380
               L+ L+  ++   +     L  R    W + +   +++            L+ L V 
Sbjct: 167 ---ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM-----------VLEILDVS 212

Query: 381 SCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHG 440
                + I G+      + + +   L   I        GF +I     + F  L      
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG---FGFHNIKDPDQNTFAGLARS-SV 268

Query: 441 QALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINA 500
           + L +S    +F             + + +   L +L  L +           + ++ + 
Sbjct: 269 RHLDLS-HGFVFS------------LNSRVFETLKDLKVLNLAYN-------KINKIAD- 307

Query: 501 DKEHIGPLFPKLFKLRLTDL--PKLKRFCNFTRNIIELPKLRYLTIENC 547
                   F  L  L++ +L    L    +       LPK+ Y+ ++  
Sbjct: 308 ------EAFYGLDNLQVLNLSYNLLGELYSSN--FYGLPKVAYIDLQKN 348

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 26/125 (20%), Positives = 45/125 (36%), Gaps = 14/125 (11%)

Query: 138 SDHFFKGTEGLKVLNFTRIHFSSLPSSLGC--LINLQTLCLDYCRLKDIAIVG------- 188
             +F      L++L   +  FSS           +L+ L L    L+             
Sbjct: 418 ILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477

Query: 189 QLKKLEILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM- 246
            L  L++L L  + +  LP  +   LT L+ L L++  L  +   +     + LE L + 
Sbjct: 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVL---SHNDLPANLEILDIS 534

Query: 247 GNSFS 251
            N   
Sbjct: 535 RNQLL 539

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 35/169 (20%), Positives = 67/169 (39%), Gaps = 22/169 (13%)

Query: 105 ISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP 162
           + L++G +  L  R+      L++L+   +   +++D  F G + L+VLN +      L 
Sbjct: 271 LDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330

Query: 163 S-SLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILILARSTIKQLP---------LEI 210
           S +   L  +  + L    +  I       L+KL+ L L  + +  +          L  
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390

Query: 211 GQLTRL-------QLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFS 251
            +L  L        L+ LS   L  +     + ++  L+ L +  N FS
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 28/162 (17%), Positives = 58/162 (35%), Gaps = 17/162 (10%)

Query: 105 ISLTYGGIQVLPERL--QCPCLELLHTEGDG--SMQVSDHFFKGTEGLKVLNFTRIHFSS 160
           + L    I  L          L  L     G     + D +F+  + L  L+ ++    S
Sbjct: 78  LDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRS 137

Query: 161 LP--SSLGCLINLQTLCLDYCRLKDI---AIVG-QLKKLEILILARSTIKQLP------- 207
           L    S G L +L+++     ++  +    +   Q K L    LA +++           
Sbjct: 138 LYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKC 197

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS 249
           +   +   L++LD+S       I  N  + +S+ +   +  +
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA 239

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.9 bits (161), Expect = 2e-11
 Identities = 23/111 (20%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVG---QLKKLEILIL 198
             GT  LK L+ +     ++ S+   L  L+ L   +  LK ++       L+ L  L +
Sbjct: 369 DFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428

Query: 199 ARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           + +  +     I   L+ L++L ++     E   P++ ++L  L  L +  
Sbjct: 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.6 bits (155), Expect = 1e-10
 Identities = 29/147 (19%), Positives = 50/147 (34%), Gaps = 8/147 (5%)

Query: 106 SLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSL 165
           SL    I+ + +       + L        Q      K    LK L FT     +  S +
Sbjct: 288 SLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKGGNAFSEV 344

Query: 166 GCLINLQTLCLDYCRLKDIAIV----GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDL 221
             L +L+ L L    L               L+ L L+ + +  +      L +L+ LD 
Sbjct: 345 D-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 222 SNCWLLEVIAPNVISKLSQLEELYMGN 248
            +  L ++   +V   L  L  L + +
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISH 430

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 1e-09
 Identities = 29/105 (27%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 148 LKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIK 204
            K L+ +      L S S      LQ L L  C ++ I       L  L  LIL  + I+
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 205 QLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            L L     L+ LQ L       L  +    I  L  L+EL + +
Sbjct: 90  SLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAH 133

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.6 bits (142), Expect = 3e-09
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 142 FKGTEGLKVLNFTRIHFSSLP--SSLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILI 197
           F G E L+ L+F   +   +   S    L NL  L + +   +     I   L  LE+L 
Sbjct: 392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLK 451

Query: 198 LARSTIKQ--LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           +A ++ ++  LP    +L  L  LDLS C  LE ++P   + LS L+ L M +
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMAS 503

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 21/113 (18%), Positives = 51/113 (45%), Gaps = 6/113 (5%)

Query: 141 FFKGTEGLKVLNFTRIHFSSLPSS-LGCLINLQTLCLDYCRLKDI---AIVGQLKKLEIL 196
            F     L  L+ +  H     +     L +L+ L +     ++     I  +L+ L  L
Sbjct: 416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 475

Query: 197 ILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            L++  ++QL       L+ LQ+L++++   L+ +   +  +L+ L+++++  
Sbjct: 476 DLSQCQLEQLSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.1 bits (133), Expect = 5e-08
 Identities = 80/478 (16%), Positives = 152/478 (31%), Gaps = 63/478 (13%)

Query: 105 ISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLN--FTRIHFSS 160
           + LT   IQ L          L+ L         + +      + LK LN     I    
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140

Query: 161 LPSSLGCLINLQTLCLDYCRLK-----DIAIVGQLKKLEI-LILARSTIKQLPLEIGQLT 214
           LP     L NL+ L L   +++     D+ ++ Q+  L + L L+ + +  +     +  
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 215 RLQLLDLSNCWLLEVIAPNVISKLSQLEELY-MGNSFSGWEKVEGGSNASLVELERLTKL 273
           RL  L L N +    +    I  L+ LE    +   F     +E    ++L   E L  L
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSAL---EGLCNL 257

Query: 274 ATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI 333
              E  +A  +    + + +      +          + +    +       + LE +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERV---KDFSYNFGWQHLE-LVN 313

Query: 334 LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVR 393
            +      + L+  + L   + +G              P L+ L +      L   G   
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKG-----GNAFSEVDLPSLEFLDLSRNG--LSFKGCCS 366

Query: 394 REEGELRR-WEGNLNST-IQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNL 451
           + +         +L+   +       +G   + HL   H   LK++        S F +L
Sbjct: 367 QSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQH-SNLKQMS-----EFSVFLSL 420

Query: 452 FDLVV-DDCTNMSSAIPANLLRCLNNLVYLEVRNC--------DSLEEVLHLEELI---N 499
            +L+  D     +      +   L++L  L++           D   E+ +L  L     
Sbjct: 421 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

Query: 500 ADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIE---------LPKLRYLTIENCP 548
                +  L P  F      L  L+   N   N ++         L  L+ + +   P
Sbjct: 481 ----QLEQLSPTAFN----SLSSLQVL-NMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 66.5 bits (163), Expect = 2e-11
 Identities = 30/118 (25%), Positives = 51/118 (43%), Gaps = 8/118 (6%)

Query: 158 FSSLPSSLGCLINLQTLCLDYCRLK-DIAIVGQLKKLEILILARSTIK-QLP--LEIGQL 213
           FS++ SSL  L  L++L L    +   ++       L  L L+R+++   +     +G  
Sbjct: 66  FSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 214 TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG---WEKVEGGSNASLVEL 267
           + L+ L++S+  L      +   KL+ LE L +  NS SG      V       L  L
Sbjct: 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 64.9 bits (159), Expect = 4e-11
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 148 LKVLNFTRIHFS-SLPSSLGCLINLQTLCLDYCRLK-DI--AIVGQLKKLEILILARSTI 203
           LK+LN +   F   +P     L +LQ L L   +   +I   + G    L  L L+ +  
Sbjct: 249 LKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306

Query: 204 K-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG-NSFSG 252
              +P   G  + L+ L LS+      +  + + K+  L+ L +  N FSG
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.4 bits (142), Expect = 5e-09
 Identities = 26/124 (20%), Positives = 49/124 (39%), Gaps = 8/124 (6%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFS-SLPSSLG--CLINLQTLCLDYCRLKDI--AIVGQL 190
           ++ +     +  L  L+ +  +FS  +  +L       LQ L L            +   
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNC 417

Query: 191 KKLEILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GN 248
            +L  L L+ + +   +P  +G L++L+ L L    L   I P  +  +  LE L +  N
Sbjct: 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLETLILDFN 476

Query: 249 SFSG 252
             +G
Sbjct: 477 DLTG 480

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.5 bits (137), Expect = 2e-08
 Identities = 25/109 (22%), Positives = 45/109 (41%), Gaps = 9/109 (8%)

Query: 148 LKVLNFTRIHFS-SLPSSLGCLINLQTLCLDYCRLK-DIAIVGQLKKLEILILARSTIK- 204
           LK L  +    S  +   +   +NL+ L +        I  +G    L+ L ++ + +  
Sbjct: 180 LKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG 237

Query: 205 QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
                I   T L+LL++S+   +  I P     L  L+ L +  N F+G
Sbjct: 238 DFSRAISTCTELKLLNISSNQFVGPIPP---LPLKSLQYLSLAENKFTG 283

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.1 bits (131), Expect = 9e-08
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 24/142 (16%)

Query: 148 LKVLNFTRIHFS-SLPS--SLGCLINLQTLCLDYCRLK---DIAIVGQLKKLEILILARS 201
           L  L+ +R   S  + +  SLG    L+ L +    L     ++   +L  LE+L L+ +
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161

Query: 202 TI-KQLPLEI---GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKV 256
           +I     +          L+ L +S   +   +    +S+   LE L +  N+FS     
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDV-D--VSRCVNLEFLDVSSNNFST---- 214

Query: 257 EGGSNASLVELERLTKLATLEI 278
                  +  L   + L  L+I
Sbjct: 215 ------GIPFLGDCSALQHLDI 230

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 3e-07
 Identities = 31/124 (25%), Positives = 48/124 (38%), Gaps = 8/124 (6%)

Query: 148 LKVLNFTRIHFS-SLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIK 204
           L+ L       +  +PS L    NL  + L   RL       +G+L+ L IL L+ ++  
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527

Query: 205 -QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNAS 263
             +P E+G    L  LDL+       I P  + K S        N  +G   V   ++  
Sbjct: 528 GNIPAELGDCRSLIWLDLNTNLFNGTI-PAAMFKQSGKI---AANFIAGKRYVYIKNDGM 583

Query: 264 LVEL 267
             E 
Sbjct: 584 KKEC 587

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 7e-06
 Identities = 30/113 (26%), Positives = 49/113 (43%), Gaps = 9/113 (7%)

Query: 148 LKVLNFTRIHFS-SLPSSL-GCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTI 203
           L+ L+     F+  +P  L G    L  L L             G    LE L L+ +  
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 204 K-QLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLS-QLEELYMG-NSFSG 252
             +LP++ + ++  L++LDLS       + P  ++ LS  L  L +  N+FSG
Sbjct: 331 SGELPMDTLLKMRGLKVLDLSFNEFSGEL-PESLTNLSASLLTLDLSSNNFSG 382

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 8e-05
 Identities = 18/107 (16%), Positives = 34/107 (31%), Gaps = 6/107 (5%)

Query: 151 LNFTRIHFS-SLPSSLGCLINLQTLCLDYCRLK--DIAIVGQLKKLEILILARSTIK-QL 206
                + F       L  L       +                  +  L ++ + +   +
Sbjct: 589 GAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYI 648

Query: 207 PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
           P EIG +  L +L+L +  +   I P+ +  L  L  L +  N   G
Sbjct: 649 PKEIGSMPYLFILNLGHNDISGSI-PDEVGDLRGLNILDLSSNKLDG 694

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.1 bits (161), Expect = 2e-11
 Identities = 18/130 (13%), Positives = 46/130 (35%), Gaps = 5/130 (3%)

Query: 148 LKVLNFTRIHFSSLPSS--LGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQ 205
           +++      +    P+S  L  ++ L  L   + +++ +   G   KL  L L  + I++
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEE 609

Query: 206 LPLEIGQLTR-LQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNAS 263
           +P +    T  ++ L  S+  L  +        +  +  +    N     E      +  
Sbjct: 610 IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMD 668

Query: 264 LVELERLTKL 273
             +    + +
Sbjct: 669 DYKGINASTV 678

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 65.3 bits (159), Expect = 4e-11
 Identities = 16/138 (11%), Positives = 39/138 (28%), Gaps = 13/138 (9%)

Query: 148 LKVLNFTRIHFSSLPSSLG-CLINLQTLCLDYCRLKDI---AIVGQLKKLEILILARSTI 203
           L  L         +P         ++ L   + +LK I        +  +  +  + + I
Sbjct: 597 LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKI 656

Query: 204 KQLPLEIG------QLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG-WEK 255
                 I       +      + LS    ++     + +  S +  + +  N  +   E 
Sbjct: 657 GSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPEN 715

Query: 256 VEGGSNASLVELERLTKL 273
                + +      LT +
Sbjct: 716 SLKPKDGNYKNTYLLTTI 733

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 17/126 (13%), Positives = 38/126 (30%), Gaps = 16/126 (12%)

Query: 139 DHFFKGTEGLKVLN-----FTRIH---FSSLPSSLGCLINLQTLCLDYCRLKDI---AIV 187
              F     +  +       T I          +      L T+ L + +L  +      
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 188 GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEV-----IAPNVISKLSQLE 242
             L  L  + ++ +     P +    ++L+   + +    E        P  I+    L 
Sbjct: 750 TTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLI 809

Query: 243 ELYMGN 248
           +L +G+
Sbjct: 810 QLQIGS 815

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 32/235 (13%), Positives = 71/235 (30%), Gaps = 39/235 (16%)

Query: 62  NFPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERL-Q 120
              +D   R     L +  +   P +  ++K  +  I      I      I  + + + +
Sbjct: 389 KMFLDYDQRLNLSDLLQDAINRNPEMKPIKK--DSRISLKDTQIGNLTNRITFISKAIQR 446

Query: 121 CPCLELLHTEGDGSMQVSDHFFKG----TEGLKVLNFTRIHFSSLPSSLGCLINLQTLCL 176
              L++++         ++  F       +     +     + +   S   L +L  + L
Sbjct: 447 LTKLQIIY--------FANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL 498

Query: 177 DYCRLKDI--AIVGQLKKLEILILAR----------STIKQLPLEIGQLTRLQLLDLSNC 224
             C         +  L +L+ L +A           +   +L  +     ++Q+  +   
Sbjct: 499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN 558

Query: 225 WLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVELERLTKLATLEI 278
            L E  A   + K+ +L  L    N               L       KL  L++
Sbjct: 559 NLEEFPASASLQKMVKLGLLDCVHNKVR-----------HLEAFGTNVKLTDLKL 602

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 58.0 bits (140), Expect = 7e-09
 Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 14/127 (11%)

Query: 132 DGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGC--LINLQTLCLDYCRLKDI-AIVG 188
           + S++  D  +K T  L  ++      +SL        L  L  + + Y           
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL 773

Query: 189 QLKKLEILILARSTI-------KQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL 241
              +L+   +            +Q P  I     L  L + +  + +V          QL
Sbjct: 774 NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE----KLTPQL 829

Query: 242 EELYMGN 248
             L + +
Sbjct: 830 YILDIAD 836

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 54.5 bits (131), Expect = 8e-08
 Identities = 14/110 (12%), Positives = 42/110 (38%), Gaps = 10/110 (9%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI--------AIVGQLKKLEILILA 199
           L  ++ +   FSS P+       L+   + + R  +           +     L  L + 
Sbjct: 755 LSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

Query: 200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS 249
            + I+++  ++    +L +LD+++   + +   +V   +     + + + 
Sbjct: 815 SNDIRKVDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.8 bits (111), Expect = 2e-05
 Identities = 20/129 (15%), Positives = 35/129 (27%), Gaps = 25/129 (19%)

Query: 145 TEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARST-- 202
           T  +      RI        L     L    L    +     +  +KK   + L  +   
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 203 -----IKQLPLEIGQLTRLQLLDLSNCWLLEVIA------------------PNVISKLS 239
                I  +   I +LT+LQ++  +N                              S L 
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLK 491

Query: 240 QLEELYMGN 248
            L ++ + N
Sbjct: 492 DLTDVELYN 500

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 20/129 (15%), Positives = 39/129 (30%), Gaps = 19/129 (14%)

Query: 159 SSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIKQL--PLEIGQLT 214
             +P ++G L  L+ L                +    ++    +  I+     + +    
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 215 RLQLLDLSNCWLLEV-----IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELER 269
           RL L DL    +        I  +    L   +   + N  +   K           ++R
Sbjct: 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK----------AIQR 446

Query: 270 LTKLATLEI 278
           LTKL  +  
Sbjct: 447 LTKLQIIYF 455

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 62.3 bits (152), Expect = 2e-11
 Identities = 24/134 (17%), Positives = 54/134 (40%), Gaps = 12/134 (8%)

Query: 146 EGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQ 205
             L  +    I+ + L + +    N++ L ++     +   +  L  LE L +    +  
Sbjct: 44  NSLTYITLANINVTDL-TGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTS 102

Query: 206 LPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASL 264
             +  +  LT L LLD+S+    +      I+ L ++  + +  +         G+   +
Sbjct: 103 DKIPNLSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYN---------GAITDI 152

Query: 265 VELERLTKLATLEI 278
           + L+ L +L +L I
Sbjct: 153 MPLKTLPELKSLNI 166

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 18/111 (16%), Positives = 44/111 (39%), Gaps = 10/111 (9%)

Query: 168 LINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLL 227
           + +L  + L    + D+  +     ++ L +           I  L+ L+ L +    + 
Sbjct: 43  MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVT 101

Query: 228 EVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEI 278
               PN +S L+ L  L + +S           ++ L ++  L K+ ++++
Sbjct: 102 SDKIPN-LSGLTSLTLLDISHS--------AHDDSILTKINTLPKVNSIDL 143

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 18/104 (17%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 148 LKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKDIAI--VGQLKKLEILILARSTIK 204
           L+ L       +S    +L  L +L  L + +    D  +  +  L K+  + L+ +   
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 205 QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
              + +  L  L+ L++    + +      I    +L +LY  +
Sbjct: 150 TDIMPLKTLPELKSLNIQFDGVHDYRG---IEDFPKLNQLYAFS 190

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 3e-11
 Identities = 18/115 (15%), Positives = 37/115 (32%), Gaps = 4/115 (3%)

Query: 136 QVSDHFFKGTEGLKVLNFT--RIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKL 193
            + D        ++ L+     I   +          L+ L L Y  + D+       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 194 EILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           + L L+ + +  +  E      +  + L N  L+ +     +     LE   +  
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 14/108 (12%), Positives = 34/108 (31%), Gaps = 2/108 (1%)

Query: 139 DHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILI 197
                 ++ L+ LN        +   +     L+TL L   +L  +         +  + 
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS 220

Query: 198 LARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELY 245
           L  + +  +   +     L+  DL           +  SK  +++ + 
Sbjct: 221 LRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVA 268

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 14/144 (9%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKDIAIVGQLKKLE 194
           Q      +    +K L+ +    S +  + L     L+ L L    L +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 195 ILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGW 253
            L L  + +++L         ++ L  +N  +  V      S+    + +Y+  N  +  
Sbjct: 84  TLDLNNNYVQELL----VGPSIETLHAANNNISRVSC----SRGQGKKNIYLANNKITML 135

Query: 254 EKVEGGSNASLVELE----RLTKL 273
             ++ G  + +  L+     +  +
Sbjct: 136 RDLDEGCRSRVQYLDLKLNEIDTV 159

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 23/122 (18%), Positives = 45/122 (36%), Gaps = 19/122 (15%)

Query: 160 SLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIKQLPLE-IGQLTRL 216
           ++          +   +    LK    ++      ++ L L+ + + Q+    +   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 217 QLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATL 276
           +LL+LS+  L E +    +  LS L  L + N            N  + EL     + TL
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNN------------N-YVQELLVGPSIETL 104

Query: 277 EI 278
             
Sbjct: 105 HA 106

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 1/77 (1%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILILARSTIKQL 206
           LK L+ +    + +         +  + L   +L  I   +   + LE   L  +     
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCG 252

Query: 207 PLEIGQLTRLQLLDLSN 223
            L        ++  ++ 
Sbjct: 253 TLRDFFSKNQRVQTVAK 269

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 64.4 bits (157), Expect = 5e-11
 Identities = 30/142 (21%), Positives = 53/142 (37%), Gaps = 9/142 (6%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKDI--AIVGQLKK 192
            +     +    L+VL       +++   +   L +L+ L L    L  +  +  G L  
Sbjct: 40  YIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSS 99

Query: 193 LEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNS 249
           L+ L L  +  + L +      LT LQ L + N      I     + L+ L EL +   S
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 250 FSGWEKVEGGSNASLVELERLT 271
                  +  S  S+ ++  LT
Sbjct: 160 LR---NYQSQSLKSIRDIHHLT 178

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 6e-09
 Identities = 21/140 (15%), Positives = 49/140 (35%), Gaps = 11/140 (7%)

Query: 118 RLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLG-CLINLQTLCL 176
           +++   +  LH             +   E +K +         +P S    L +L+ L L
Sbjct: 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDL 341

Query: 177 DYCRLKDIAI-----VGQLKKLEILILARSTIKQLPLEIG---QLTRLQLLDLSNCWLLE 228
               + +  +      G    L+ L+L+++ ++ +         L  L  LD+S      
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP 401

Query: 229 VIAPNVISKLSQLEELYMGN 248
           +  P+      ++  L + +
Sbjct: 402 M--PDSCQWPEKMRFLNLSS 419

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 21/134 (15%), Positives = 52/134 (38%), Gaps = 21/134 (15%)

Query: 134 SMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKL 193
           SMQ +       + L  L+ +R  F  +P S      ++ L L    ++ +      + L
Sbjct: 375 SMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVK-TCIPQTL 433

Query: 194 EILILARSTIKQLPLEIGQLTRLQL-------------------LDLSNCWLLEVIAPNV 234
           E+L ++ + +    L + +L  L +                   + +S    L+ +   +
Sbjct: 434 EVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRN-QLKSVPDGI 492

Query: 235 ISKLSQLEELYMGN 248
             +L+ L+++++  
Sbjct: 493 FDRLTSLQKIWLHT 506

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.6 bits (158), Expect = 5e-11
 Identities = 33/150 (22%), Positives = 63/150 (42%), Gaps = 19/150 (12%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSL---PSSLGCLINLQTLCLDYCRLKDI--AIVGQL 190
           Q++ + F     L+ L   R+   ++   PS    L NL  L L    + +I   ++  L
Sbjct: 444 QLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL 503

Query: 191 KKLEILILARSTIKQL---------PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL 241
           +KLEIL L  + + +L            +  L+ L +L+L +    + I   V   L +L
Sbjct: 504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFEL 562

Query: 242 EELYM-GNSFSGWEKVEGGSNASLVELERL 270
           + + +  N+ +    +      + V L+ L
Sbjct: 563 KIIDLGLNNLNT---LPASVFNNQVSLKSL 589

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 64.3 bits (157), Expect = 7e-11
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 10/143 (6%)

Query: 142 FKGTEGLKVLNFT--RIHFSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILI 197
           F     L+VL+     I           L N+  + L Y +   +       +  L+ L+
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM 460

Query: 198 LAR---STIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGW 253
           L R     +   P     L  L +LDLSN   +  I  +++  L +LE L +  N+ +  
Sbjct: 461 LRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 254 EKVEGGSNASLVELERLTKLATL 276
            K        +  L+ L+ L  L
Sbjct: 520 WK-HANPGGPIYFLKGLSHLHIL 541

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 3e-10
 Identities = 27/128 (21%), Positives = 50/128 (39%), Gaps = 9/128 (7%)

Query: 148 LKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIK 204
           + VLN T      L  ++      L +L + +  +  +   +  +L  L++L L  + + 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 205 QLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG-NSFSGWEKVEGGSNA 262
           QL  +     T L  L L +  + ++   N   K   L  L +  N  S     + G+  
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIK-NNPFVKQKNLITLDLSHNGLSS---TKLGTQV 142

Query: 263 SLVELERL 270
            L  L+ L
Sbjct: 143 QLENLQEL 150

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 58.5 bits (142), Expect = 4e-09
 Identities = 26/127 (20%), Positives = 55/127 (43%), Gaps = 10/127 (7%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIKQ 205
            +V + + +  + +P  L    N+  L L + +L+ +  A   +  +L  L +  +TI +
Sbjct: 6   HEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 206 L-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNAS 263
           L P    +L  L++L+L +   L  ++    +  + L EL++  NS      ++      
Sbjct: 64  LEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELHLMSNSIQK---IKNNPFVK 119

Query: 264 LVELERL 270
              L  L
Sbjct: 120 QKNLITL 126

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 57.7 bits (140), Expect = 8e-09
 Identities = 28/129 (21%), Positives = 49/129 (37%), Gaps = 13/129 (10%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSL---------PSSLGCLINLQTLCLDYCRLKDI--A 185
           ++D   +G E L++L+    + + L            L  L +L  L L+     +I   
Sbjct: 495 INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVE 554

Query: 186 IVGQLKKLEILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEEL 244
           +   L +L+I+ L  + +  LP  +      L+ L+L    +  V           L EL
Sbjct: 555 VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL 614

Query: 245 YM-GNSFSG 252
            M  N F  
Sbjct: 615 DMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 25/125 (20%), Positives = 49/125 (39%), Gaps = 9/125 (7%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKDIA----IVGQLK 191
           + ++ F   + L  L+ +    SS    +   L NLQ L L   +++ +      +    
Sbjct: 112 IKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 192 KLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVIS--KLSQLEELYM-G 247
            L+ L L+ + IK+  P     + RL  L L+N  L   +   +      + +  L +  
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 248 NSFSG 252
           +  S 
Sbjct: 232 SQLST 236

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.4 bits (134), Expect = 4e-08
 Identities = 31/144 (21%), Positives = 59/144 (40%), Gaps = 12/144 (8%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGC-LINLQTLCLDYCRLKDIAIVGQ----- 189
           ++ D  F+  + L+ LN        + S++   LINL+ L L         +  +     
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL 378

Query: 190 -LKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM- 246
               L IL L ++ I ++  +    L  L++LDL    + + +       L  + E+Y+ 
Sbjct: 379 AHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLS 438

Query: 247 GNSFSGWEKVEGGSNASLVELERL 270
            N +     +   S A +  L+RL
Sbjct: 439 YNKYLQ---LTRNSFALVPSLQRL 459

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.0 bits (133), Expect = 5e-08
 Identities = 27/134 (20%), Positives = 47/134 (35%), Gaps = 14/134 (10%)

Query: 148 LKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRL-----KDIAIVGQLKKLEILILARS 201
           LK L  +        P     +  L  L L+  +L     + + +      +  L L+ S
Sbjct: 173 LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS 232

Query: 202 TIKQLPLEIG---QLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVE 257
            +           + T L +LDLS    L V+  +  + L QLE  ++  N+      + 
Sbjct: 233 QLSTTSNTTFLGLKWTNLTMLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQH---LF 288

Query: 258 GGSNASLVELERLT 271
             S   L  +  L 
Sbjct: 289 SHSLHGLFNVRYLN 302

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.6 bits (132), Expect = 7e-08
 Identities = 29/154 (18%), Positives = 52/154 (33%), Gaps = 20/154 (12%)

Query: 134 SMQVSDHFFKGTEG--LKVLNFTRIHFSSLPSSLG---CLINLQTLCLDYCRLKDI--AI 186
              +++          ++ L+ +    S+  ++        NL  L L Y  L  +    
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 187 VGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWL--------LEVIAPNVISK 237
              L +LE   L  + I+ L    +  L  ++ L+L   +         L  I       
Sbjct: 268 FAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327

Query: 238 LSQLEELYM-GNSFSGWEKVEGGSNASLVELERL 270
           L  LE L M  N   G   ++      L+ L+ L
Sbjct: 328 LKCLEHLNMEDNDIPG---IKSNMFTGLINLKYL 358

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.8 bits (122), Expect = 1e-06
 Identities = 18/106 (16%), Positives = 41/106 (38%), Gaps = 7/106 (6%)

Query: 167 CLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCW 225
           C ++ +     + +L  +        + +L L  + +++L      + ++L  LD+    
Sbjct: 2   CTVSHEVADCSHLKLTQV-PDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFN- 59

Query: 226 LLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVELERL 270
            +  + P +  KL  L+ L +  N  S    +   + A    L  L
Sbjct: 60  TISKLEPELCQKLPMLKVLNLQHNELSQ---LSDKTFAFCTNLTEL 102

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.5 bits (155), Expect = 1e-10
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 7/121 (5%)

Query: 137 VSDHFFKGTEGLKVLNFT--RIHFSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKK 192
             D  F G   L  L         ++L +      NL  L L  C+L+ I   +   L +
Sbjct: 439 DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHR 498

Query: 193 LEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSF 250
           L++L ++ + +  L      QL  L  LD S    +E     +      L    +  NS 
Sbjct: 499 LQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIETSKGILQHFPKSLAFFNLTNNSV 557

Query: 251 S 251
           +
Sbjct: 558 A 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.1 bits (154), Expect = 1e-10
 Identities = 38/142 (26%), Positives = 55/142 (38%), Gaps = 11/142 (7%)

Query: 136 QVSDHFFKGTEGLKVLNF--TRIHFSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLK 191
            +    F G E L+ L+F  + +   +  S+   L  L  L + Y   K     I   L 
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 192 KLEILILARSTIKQLPLE--IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GN 248
            L  L +A ++ K   L       T L  LDLS C  LE I+  V   L +L+ L M  N
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHN 507

Query: 249 SFSGWEKVEGGSNASLVELERL 270
           +      ++      L  L  L
Sbjct: 508 NLLF---LDSSHYNQLYSLSTL 526

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 2e-10
 Identities = 26/128 (20%), Positives = 47/128 (36%), Gaps = 8/128 (6%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIA---IVGQLKKLEILILARSTIK 204
           L+ L+ +      + ++   L  LQ L   +  LK +        L+KL  L ++ +  K
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 205 QLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNA 262
                I   LT L  L ++     +    NV +  + L  L +          +  G   
Sbjct: 438 IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQ---ISWGVFD 494

Query: 263 SLVELERL 270
           +L  L+ L
Sbjct: 495 TLHRLQLL 502

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 27/111 (24%), Positives = 40/111 (36%), Gaps = 8/111 (7%)

Query: 148 LKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKDI---AIVGQLKKLEILILARSTI 203
            K ++ +      L   S      LQ L L  C ++ I   A  G L  L  LIL  + I
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHG-LHHLSNLILTGNPI 92

Query: 204 KQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
           +         LT L+ L       L  +    I +L  L++L +  N    
Sbjct: 93  QSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHS 142

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 1e-08
 Identities = 28/146 (19%), Positives = 50/146 (34%), Gaps = 9/146 (6%)

Query: 137 VSDHFFKGTEGLKVLN--FTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKK 192
           +          LK LN     IH   LP+    L NL  + L Y  ++ I    +  L++
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 193 L----EILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-G 247
                  L ++ + I  +  +  Q  +L  L L   +    I    +  L+ L    +  
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 248 NSFSGWEKVEGGSNASLVELERLTKL 273
             F     +E    + +  L  +T  
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTID 264

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILAR- 200
                  + L+  R      P+    L  L++L L   +         L  L  L L+R 
Sbjct: 303 VPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRN 360

Query: 201 --STIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
             S              L+ LDLS    + +        L +L+ L   +
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM--SANFMGLEELQHLDFQH 408

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 52.7 bits (127), Expect = 2e-07
 Identities = 34/141 (24%), Positives = 53/141 (37%), Gaps = 10/141 (7%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKDI--AIVGQLKK 192
            + D  + G   L  L  T     S  P S   L +L+ L     +L  +    +GQL  
Sbjct: 70  TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129

Query: 193 LEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL----EELYM 246
           L+ L +A + I    L      LT L  +DLS    ++ I  N +  L +       L M
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN-YIQTITVNDLQFLRENPQVNLSLDM 188

Query: 247 GNSFSGWEKVEGGSNASLVEL 267
             +   + + +      L EL
Sbjct: 189 SLNPIDFIQDQAFQGIKLHEL 209

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 9/120 (7%)

Query: 137 VSDHFFKGTEGLKVLNFTRIH---FSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKL 193
                 +G   + +  F   +   FS       CL N+  + L    +K +  V +  K 
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKW 309

Query: 194 EILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
           + L + R  +KQ P     L  L+ L L+               L  L  L +  N+ S 
Sbjct: 310 QSLSIIRCQLKQFP--TLDLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSRNALSF 364

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 5/104 (4%)

Query: 147 GLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILILARSTIK 204
            L +L     + +     L     L  + L Y  L+ I      ++++LE L ++ + + 
Sbjct: 233 ELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV 291

Query: 205 QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            L L    +  L++LDLS+  LL V       +  +LE LY+ +
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDH 333

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 59.2 bits (143), Expect = 3e-09
 Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIA--IVGQLKK 192
           ++          +++LN   +    + + +      +Q L + +  ++ +   +   +  
Sbjct: 65  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 124

Query: 193 LEILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           L +L+L R+ +  LP  I     +L  L +SN   LE I  +     + L+ L + +
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS 180

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 148 LKVLNFTRIHFSSLPSS-LGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILILARSTIK 204
            K++ F       LP++ L     ++ L L+  ++++I          ++ L +  + I+
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 205 QLPLEIGQ-LTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNA 262
            LP  + Q +  L +L L    L   +   +     +L  L M  N+     ++E  +  
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDL-SSLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQ 168

Query: 263 SLVELERL 270
           +   L+ L
Sbjct: 169 ATTSLQNL 176

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.9 bits (124), Expect = 4e-07
 Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 19/150 (12%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPSSL-GCLINLQTLCLDYCRLKDI--AIVGQLKK 192
            +  H F+    L VL   R   SSLP  +      L TL +    L+ I          
Sbjct: 113 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 172

Query: 193 LEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFS 251
           L+ L L+ + +  + L    +  L   ++S   L      + ++    +EEL    NS +
Sbjct: 173 LQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN 224

Query: 252 GWEKVEGGSNASLVELE----RLTKLATLE 277
               V G  N  L  L+     LT  A L 
Sbjct: 225 ---VVRGPVNVELTILKLQHNNLTDTAWLL 251

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 18/107 (16%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 168 LINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIKQLPLEI-GQLTRLQLLDLSNC 224
           L N + +      ++ +  A++   +++E+L L    I+++          +Q L +   
Sbjct: 50  LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN 109

Query: 225 WLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVELERL 270
             +  + P+V   +  L  L +  N  S    +  G   +  +L  L
Sbjct: 110 -AIRYLPPHVFQNVPLLTVLVLERNDLS---SLPRGIFHNTPKLTTL 152

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 30/139 (21%), Positives = 54/139 (38%), Gaps = 8/139 (5%)

Query: 137 VSDHFFKGTEGLKVLNFTRI-HFSSLPS-SLGCLINLQTLCLDYCRLKDIAIVGQLKKLE 194
           +  + F     L  L+   +     +   +   L NL+ L L  C +KD+  +  L  LE
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLE 221

Query: 195 ILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
            L ++ +   ++       L+ L+ L + N   + +I  N    L+ L EL +  N+ S 
Sbjct: 222 ELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHNNLS- 279

Query: 253 WEKVEGGSNASLVELERLT 271
              +       L  L  L 
Sbjct: 280 --SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.1 bits (146), Expect = 9e-10
 Identities = 35/143 (24%), Positives = 51/143 (35%), Gaps = 18/143 (12%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDI---AIVGQLKKLEILI 197
           F+    L+VL   R     +   +   L +L TL L    L  I   A    L KL  L 
Sbjct: 95  FRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEY-LSKLRELW 153

Query: 198 LARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEK 255
           L  + I+ +P     ++  L  LDL     LE I+      L  L+ L +   +      
Sbjct: 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK---- 209

Query: 256 VEGGSNASLVELERLTKLATLEI 278
                   +  L  L  L  LE+
Sbjct: 210 -------DMPNLTPLVGLEELEM 225

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 2/102 (1%)

Query: 148 LKVLNFTRIHFSSLPSS-LGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQL 206
             +L+ +     +   + L     L  L LD   L  + + G L  L  L L+ + ++ L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 207 PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           PL    L  L +LD+S    L  +    +  L +L+ELY+  
Sbjct: 93  PLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKG 133

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILILA 199
                 L  L+ +     SLP     L  L  L + + RL  +    +  L +L+ L L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLK 132

Query: 200 RSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            + +K LP  +     +L+ L L+N   L  +   +++ L  L+ L +  
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQE 181

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 61.8 bits (150), Expect = 3e-10
 Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 10/182 (5%)

Query: 136 QVSDHFFKGTEGLKVLNFT--RIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKL 193
            + D        ++ L+     I   +          L+ L L Y  + D+       KL
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKL 193

Query: 194 EILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
           + L L+ + +  +  E      +  + L N  L+ +     +     LE   + GN F  
Sbjct: 194 KTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLI--EKALRFSQNLEHFDLRGNGFHC 251

Query: 253 WEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDP 312
                G       + +R+  +A   ++    +      V            D      D 
Sbjct: 252 -----GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADR 306

Query: 313 LL 314
           L+
Sbjct: 307 LI 308

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 18/131 (13%), Positives = 43/131 (32%), Gaps = 19/131 (14%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLE 194
           Q      +    +K L+ +    S +  + L     L+ L L    L +   +  L  L 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 195 ILILARSTIKQLP-----------------LEIGQLTRLQLLDLSNCWLLEVIAPNVISK 237
            L L  + +++L                  +   +    + + L+N   + ++       
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGC 142

Query: 238 LSQLEELYMGN 248
            S+++ L +  
Sbjct: 143 RSRVQYLDLKL 153

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 23/120 (19%), Positives = 46/120 (38%), Gaps = 19/120 (15%)

Query: 160 SLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIKQL-PLEIGQLTRL 216
           ++          +   +    LK    ++      ++ L L+ + + Q+   ++   T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 217 QLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATL 276
           +LL+LS+  L E +    +  LS L  L + N            N  + EL     + TL
Sbjct: 61  ELLNLSSNVLYETLD---LESLSTLRTLDLNN------------N-YVQELLVGPSIETL 104

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 8/139 (5%)

Query: 137 VSDHFFKGTEGLKVLNFTRI-HFSSLPS-SLGCLINLQTLCLDYCRLKDIAIVGQLKKLE 194
           +  + F     L+ L+   +   S +   +   L NL+ L L  C L++I  +  L KL+
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLD 210

Query: 195 ILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
            L L+ + +  +       L  LQ L +     ++VI  N    L  L E+ +  N+ + 
Sbjct: 211 ELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNNLT- 268

Query: 253 WEKVEGGSNASLVELERLT 271
              +       L  LER+ 
Sbjct: 269 --LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 61.3 bits (149), Expect = 3e-10
 Identities = 37/142 (26%), Positives = 56/142 (39%), Gaps = 16/142 (11%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILIL 198
           FK    L++L  +R H  ++   +   L NL TL L   RL  I       L KL+ L L
Sbjct: 84  FKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143

Query: 199 ARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKV 256
             + I+ +P     ++  L+ LDL     L  I+      LS L  L +   +       
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR----- 198

Query: 257 EGGSNASLVELERLTKLATLEI 278
                  +  L  L KL  L++
Sbjct: 199 ------EIPNLTPLIKLDELDL 214

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.0 bits (150), Expect = 3e-10
 Identities = 39/134 (29%), Positives = 59/134 (44%), Gaps = 19/134 (14%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           +  +        S+   +  L N+  L L+  +L DI  +  LK L  L L  + IK L 
Sbjct: 45  IDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLS 103

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSN--ASLV 265
             +  L +L+ L L +  + ++   N +  L QLE LY+GN            N    + 
Sbjct: 104 -SLKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGN------------NKITDIT 147

Query: 266 ELERLTKLATLEIE 279
            L RLTKL TL +E
Sbjct: 148 VLSRLTKLDTLSLE 161

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 2e-08
 Identities = 31/126 (24%), Positives = 57/126 (45%), Gaps = 7/126 (5%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           LK L+      S + + L  L  L++L L   ++ DI ++ +L KL+ L L  + I  + 
Sbjct: 111 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 169

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVEL 267
             +  LT+LQ L LS   + ++     ++ L  L+ L + +     + +   SN  LV  
Sbjct: 170 -PLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFSQECLNKPINHQSN--LVVP 223

Query: 268 ERLTKL 273
             +   
Sbjct: 224 NTVKNT 229

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 20/117 (17%), Positives = 48/117 (41%), Gaps = 5/117 (4%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIA--IVGQLKK 192
           ++          +++LN   +    + + +      +Q L + +  ++ +   +   +  
Sbjct: 59  KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPL 118

Query: 193 LEILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           L +L+L R+ +  LP  I     +L  L +SN   LE I  +     + L+ L + +
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQLSS 174

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.0 bits (138), Expect = 8e-09
 Identities = 24/128 (18%), Positives = 52/128 (40%), Gaps = 9/128 (7%)

Query: 148 LKVLNFTRIHFSSLPSS-LGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIK 204
            K++ F       LP++ L     ++ L L+  ++++I          ++ L +  + I+
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 205 QLPLEIGQ-LTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNA 262
            LP  + Q +  L +L L     L  +   +     +L  L M  N+     ++E  +  
Sbjct: 107 YLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLE---RIEDDTFQ 162

Query: 263 SLVELERL 270
           +   L+ L
Sbjct: 163 ATTSLQNL 170

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 1e-08
 Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 20/130 (15%)

Query: 136 QVSDHFFKGTEGLKVLN-----FTRIHFSSLPS------------SLGCLINLQTLCLDY 178
           ++ D  F+ T  L+ L       T +  S +PS            +L   I ++ L   +
Sbjct: 155 RIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH 214

Query: 179 CRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKL 238
             +  +       +L IL L  + +      +     L  +DLS    LE I  +   K+
Sbjct: 215 NSINVVR-GPVNVELTILKLQHNNLTDTA-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKM 271

Query: 239 SQLEELYMGN 248
            +LE LY+ N
Sbjct: 272 QRLERLYISN 281

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 54.7 bits (132), Expect = 4e-08
 Identities = 16/102 (15%), Positives = 36/102 (35%), Gaps = 3/102 (2%)

Query: 142 FKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILILA 199
                GL  ++ +      +       +  L+ L +   RL  +      +  L++L L+
Sbjct: 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLS 303

Query: 200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL 241
            + +  +     Q  RL+ L L +   +  +  +    L  L
Sbjct: 304 HNHLLHVERNQPQFDRLENLYLDHNS-IVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 52.0 bits (125), Expect = 3e-07
 Identities = 36/150 (24%), Positives = 55/150 (36%), Gaps = 19/150 (12%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPSSL-GCLINLQTLCLDYCRLKDI--AIVGQLKK 192
            +  H F+    L VL   R   SSLP  +      L TL +    L+ I          
Sbjct: 107 YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166

Query: 193 LEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFS 251
           L+ L L+ + +  + L    +  L   ++S   L      + ++    +EEL    NS +
Sbjct: 167 LQNLQLSSNRLTHVDL--SLIPSLFHANVSYNLL------STLAIPIAVEELDASHNSIN 218

Query: 252 GWEKVEGGSNASLVELE----RLTKLATLE 277
               V G  N  L  L+     LT  A L 
Sbjct: 219 ---VVRGPVNVELTILKLQHNNLTDTAWLL 245

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 17/108 (15%), Positives = 44/108 (40%), Gaps = 5/108 (4%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARS 201
                 ++ L+ +    + +   +   + L  L L +  L D A +     L  + L+ +
Sbjct: 201 LAIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYN 258

Query: 202 TIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            ++++      ++ RL+ L +SN  L+ +        +  L+ L + +
Sbjct: 259 ELEKIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSH 304

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEI 195
           +  H F   + L+ L  +     +L      +  L+ L L +  L  +     Q  +LE 
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 322

Query: 196 LILARSTIKQLPLEIGQLTRLQLLDLSN 223
           L L  ++I  L   +     L+ L LS+
Sbjct: 323 LYLDHNSIVTLK--LSTHHTLKNLTLSH 348

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 20/117 (17%), Positives = 46/117 (39%), Gaps = 8/117 (6%)

Query: 158 FSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQ--LKKLEILILARSTIKQLPLEI-GQLT 214
           +  + S+L        + +D              L   +I+    ST+++LP  +     
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 215 RLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVELERL 270
           +++LL+L++   +E I     +    +++LYM  N+      +      ++  L  L
Sbjct: 70  QVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNAIR---YLPPHVFQNVPLLTVL 122

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 37/181 (20%), Positives = 61/181 (33%), Gaps = 17/181 (9%)

Query: 105 ISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP 162
           + L    I+ L +      P LE L    +    V    F     L+ L         +P
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP 96

Query: 163 S-SLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILILARSTIKQLPLEI-GQLTRLQL 218
                 L NL  L +   ++  +   +   L  L+ L +  + +  +       L  L+ 
Sbjct: 97  LGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ 156

Query: 219 LDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVELERLTKLATLE 277
           L L  C  L  I    +S L  L  L +   + +    +   S       +RL +L  LE
Sbjct: 157 LTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNIN---AIRDYS------FKRLYRLKVLE 206

Query: 278 I 278
           I
Sbjct: 207 I 207

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 5e-09
 Identities = 33/140 (23%), Positives = 57/140 (40%), Gaps = 9/140 (6%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIAIV--GQLKK 192
            + D+ F+    LK L         +   +   L +L+ L L+ C L  I       L  
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 193 LEILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG-NSF 250
           L +L L    I  +      +L RL++L++S+   L+ + PN +  L+ L  L +   + 
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN-LTSLSITHCNL 236

Query: 251 SGWEKVEGGSNASLVELERL 270
           +    V   +   LV L  L
Sbjct: 237 T---AVPYLAVRHLVYLRFL 253

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 26/129 (20%), Positives = 52/129 (40%), Gaps = 9/129 (6%)

Query: 148 LKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILILARSTIK 204
            ++L+  +    +L         +L+ L L+   +  +       L  L  L L  + +K
Sbjct: 34  TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK 93

Query: 205 QLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNA 262
            +PL +   L+ L  LD+S    + ++   +   L  L+ L +  N       +   + +
Sbjct: 94  LIPLGVFTGLSNLTKLDISEN-KIVILLDYMFQDLYNLKSLEVGDNDLV---YISHRAFS 149

Query: 263 SLVELERLT 271
            L  LE+LT
Sbjct: 150 GLNSLEQLT 158

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.1 bits (133), Expect = 4e-08
 Identities = 27/140 (19%), Positives = 53/140 (37%), Gaps = 9/140 (6%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDI--AIVGQLKK 192
            +         GL VL    ++ +++   S   L  L+ L + +    D           
Sbjct: 166 SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 193 LEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSF 250
           L  L +    +  +P   +  L  L+ L+LS    +  I  +++ +L +L+E+ + G   
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQL 284

Query: 251 SGWEKVEGGSNASLVELERL 270
           +    VE  +   L  L  L
Sbjct: 285 A---VVEPYAFRGLNYLRVL 301

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 30/133 (22%), Positives = 55/133 (41%), Gaps = 19/133 (14%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  L       + L + L  L  +  L L    LK+++ +  L+ ++ L L  + I  + 
Sbjct: 65  LIGLELKDNQITDL-APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVT 123

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSN--ASLV 265
             +  L+ LQ+L L    +  +     ++ L+ L+ L +GN               + L 
Sbjct: 124 -PLAGLSNLQVLYLDLNQITNISP---LAGLTNLQYLSIGN------------AQVSDLT 167

Query: 266 ELERLTKLATLEI 278
            L  L+KL TL+ 
Sbjct: 168 PLANLSKLTTLKA 180

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 54.7 bits (132), Expect = 3e-08
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 163 SSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLS 222
           S L  L NLQ L +   ++ D+  +  L KL  L    + I  +   +  L  L  + L 
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLK 203

Query: 223 NCWLLEVIAPNVISKLSQLEELYMGN 248
           N  + +V     ++  S L  + + N
Sbjct: 204 NNQISDVSP---LANTSNLFIVTLTN 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 57.8 bits (140), Expect = 3e-09
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 19/134 (14%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  L         L SSL  L  L++L L++  + DI  +  L +LE L L  + I  + 
Sbjct: 92  LGWLFLDENKVKDL-SSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDIT 150

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSN--ASLV 265
             + +LT+L  L L +  + ++     ++ L++L+ LY+              N  + L 
Sbjct: 151 -VLSRLTKLDTLSLEDNQISDI---VPLAGLTKLQNLYLSK------------NHISDLR 194

Query: 266 ELERLTKLATLEIE 279
            L  L  L  LE+ 
Sbjct: 195 ALAGLKNLDVLELF 208

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 17/146 (11%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           LK L+      S + + L  L  L++L L   ++ DI ++ +L KL+ L L  + I  + 
Sbjct: 114 LKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV 172

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVEL 267
             +  LT+LQ L LS   + ++     ++ L  L+ L + +                  +
Sbjct: 173 -PLAGLTKLQNLYLSKNHISDL---RALAGLKNLDVLELFS-----------QECLNKPI 217

Query: 268 ERLTKLATL-EIEVADAEILPPNFVS 292
              + L     ++  D  ++ P  +S
Sbjct: 218 NHQSNLVVPNTVKNTDGSLVTPEIIS 243

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.6 bits (98), Expect = 4e-04
 Identities = 21/98 (21%), Positives = 36/98 (36%), Gaps = 5/98 (5%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  L+      S +   L  L  LQ L L    + D+  +  LK L++L L        P
Sbjct: 158 LDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKP 216

Query: 208 LE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEEL 244
           +     L     +  ++     ++ P +IS     E+ 
Sbjct: 217 INHQSNLVVPNTVKNTDG---SLVTPEIISDDGDYEKP 251

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 33/111 (29%), Positives = 53/111 (47%), Gaps = 5/111 (4%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSSL-GCLINLQTLCLDYCRLKDI--AIVGQLKKLEILIL 198
           F     L++L        +LP+ +   L NL+TL +   +L+ +   +  QL  L  L L
Sbjct: 57  FHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL 116

Query: 199 ARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            R+ +K LP  +   LT+L  L L     L+ +   V  KL+ L+EL + N
Sbjct: 117 DRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYN 166

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.5 bits (142), Expect = 3e-09
 Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 9/107 (8%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARS 201
            + +  LK+++        LP       +L+ +     +L+++  +  L  L  +    +
Sbjct: 149 LQNSSFLKIIDVDNNSLKKLPDLPP---SLEFIAAGNNQLEELPELQNLPFLTAIYADNN 205

Query: 202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           ++K+LP     L     +   N  L E      +  L  L  +Y  N
Sbjct: 206 SLKKLPDLPLSLES---IVAGNNILEE---LPELQNLPFLTTIYADN 246

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 18/102 (17%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  +         LP       +L+++      L+++  +  L  L  +    + +K LP
Sbjct: 197 LTAIYADNNSLKKLPDLPL---SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 253

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS 249
                L  L + D     L     P +   L+ L+      S
Sbjct: 254 DLPPSLEALNVRDNYLTDL-----PELPQSLTFLDVSENIFS 290

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L V N      S LP        L+ L +   +L+ +  +     L+I+ +  +++K+LP
Sbjct: 116 LLVDNNNLKALSDLPP------LLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP 169

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
                L     +   N   LE +    +  L  L  +Y  N
Sbjct: 170 DLPPSLEF---IAAGNN-QLEELPE--LQNLPFLTAIYADN 204

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 5e-06
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 146 EGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQ 205
             L  LN +     SL        +L+ L +   +L ++       +LE LI + + + +
Sbjct: 297 PNLYYLNASSNEIRSLCDLPP---SLEELNVSNNKLIELP--ALPPRLERLIASFNHLAE 351

Query: 206 LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE 242
           +P     L +   L +    L E   P++   +  L 
Sbjct: 352 VPELPQNLKQ---LHVEYNPLREF--PDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 45.0 bits (107), Expect = 6e-05
 Identities = 17/118 (14%), Positives = 40/118 (33%), Gaps = 24/118 (20%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLK--------------- 191
           L+ L  +  H + +P       NL+ L ++Y  L++   I   ++               
Sbjct: 339 LERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELP 395

Query: 192 -KLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
             L+ L +  + +++ P     +  L++         E           +LE+    +
Sbjct: 396 QNLKQLHVETNPLREFPDIPESVEDLRMNSERVVDPYEFA----HETTDKLEDDVFEH 449

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 24/111 (21%)

Query: 170 NLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEV 229
               L L+   L  +        LE L+ + +++ +LP     L  L + + +       
Sbjct: 72  QAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNL------ 123

Query: 230 IAPNVISKL-SQLEELYM-GNSFSGWEKVEGGSNASLVELERLTKLATLEI 278
                +S L   LE L +  N               L EL+  + L  +++
Sbjct: 124 ---KALSDLPPLLEYLGVSNNQLE-----------KLPELQNSSFLKIIDV 160

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 57.4 bits (139), Expect = 4e-09
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 9/142 (6%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDI--AIVGQLKK 192
            +S+   +    L+ L  T    +++   S   L +L+ L L Y  L ++  +    L  
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSS 125

Query: 193 LEILILARSTIKQLPLEI--GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNS 249
           L  L L  +  K L        LT+LQ+L + N      I     + L+ LEEL +  + 
Sbjct: 126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 250 FSGWEKVEGGSNASLVELERLT 271
                  E  S  S+  +  L 
Sbjct: 186 LQ---SYEPKSLKSIQNVSHLI 204

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 3e-06
 Identities = 14/123 (11%), Positives = 40/123 (32%), Gaps = 12/123 (9%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIAIV-------- 187
                 K  + +  L         L    +    +++ L L    L              
Sbjct: 189 YEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETN 248

Query: 188 --GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELY 245
              +      + +   ++ Q+   + Q++ L  L+ S    L+ +   +  +L+ L++++
Sbjct: 249 SLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIW 307

Query: 246 MGN 248
           +  
Sbjct: 308 LHT 310

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 4/111 (3%)

Query: 142 FKGTEGLKVLNFTRIHFSSLPSSL-GCLINLQTLCLDYCRLKDIA--IVGQLKKLEILIL 198
           F     L+VL+ +R    ++       L +L TL L    ++ +A      L  L+ L+ 
Sbjct: 48  FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107

Query: 199 ARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
             + +  L     G L  L+ L++++  +     P   S L+ LE L + +
Sbjct: 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSS 158

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.5 bits (137), Expect = 5e-09
 Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 5/116 (4%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIA--IVGQLKKL 193
           V    F G   L  L+  R     L       L  LQ L L    L+ +       L  L
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNL 155

Query: 194 EILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
             L L  + I  +P      L  L  L L    +   + P+    L +L  LY+  
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRV-AHVHPHAFRDLGRLMTLYLFA 210

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 9/118 (7%)

Query: 157 HFSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIKQLPLEI-GQL 213
              ++P  +      Q + L   R+  +  A     + L IL L  + + ++       L
Sbjct: 22  GLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGL 79

Query: 214 TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSNASLVELERL 270
             L+ LDLS+   L  + P     L +L  L++         ++  G    L  L+ L
Sbjct: 80  ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ---ELGPGLFRGLAALQYL 134

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 27/144 (18%), Positives = 56/144 (38%), Gaps = 21/144 (14%)

Query: 146 EGLKVLNFTRIHFSSLPSSLGC---------LINLQTLCLDYCRLKDIAIVGQLKKLEIL 196
             LK ++  R  +     S              +++ L L +  L  +  + QL  +  L
Sbjct: 409 STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHL 468

Query: 197 ILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG-NSFSGWEK 255
            L+ + ++ LP  +  L  L++L  S+   LE +    ++ L +L+EL +  N       
Sbjct: 469 DLSHNRLRALPPALAALRCLEVLQASDN-ALENVDG--VANLPRLQELLLCNNRLQQSAA 525

Query: 256 VEGGSNASLVELERLTKLATLEIE 279
           ++         L    +L  L ++
Sbjct: 526 IQ--------PLVSCPRLVLLNLQ 541

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 57.8 bits (139), Expect = 6e-09
 Identities = 22/101 (21%), Positives = 42/101 (41%), Gaps = 4/101 (3%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           +  L+ +     +LP +L  L  L+ L      L+++  V  L +L+ L+L  + ++Q  
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 208 --LEIGQLTRLQLLDLSN--CWLLEVIAPNVISKLSQLEEL 244
               +    RL LL+L        E I   +   L  +  +
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.0 bits (129), Expect = 1e-07
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 4/102 (3%)

Query: 149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEILILARSTIKQLP 207
           +VL+      + L   L  L+ +  L L + RL+ +   +  L+ LE+L  + + ++ + 
Sbjct: 444 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD 502

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GN 248
             +  L RLQ L L N  L +  A   +    +L  L + GN
Sbjct: 503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN 543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 56.8 bits (138), Expect = 7e-09
 Identities = 24/101 (23%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 161 LPSSLGCLINLQTLCLDYCRLK-DIAI---VGQLKKLEILILARSTIKQL----PLEIGQ 212
           L  +      +  L L    L     I   +  L  L  L +    I  L    P  I +
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI--GGINNLVGPIPPAIAK 99

Query: 213 LTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
           LT+L  L +++  +   I P+ +S++  L  L    N+ SG
Sbjct: 100 LTQLHYLYITHTNVSGAI-PDFLSQIKTLVTLDFSYNALSG 139

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 53.7 bits (130), Expect = 6e-08
 Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 148 LKVLNFTRI-HFS-SLPSSLGCLINLQTLCLDYCRLK-DI-AIVGQLKKLEILILARSTI 203
           L  L    I +    +P ++  L  L  L + +  +   I   + Q+K L  L  + + +
Sbjct: 78  LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNAL 137

Query: 204 K-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL-EELYMG-NSFSG 252
              LP  I  L  L  +      +   I P+     S+L   + +  N  +G
Sbjct: 138 SGTLPPSISSLPNLVGITFDGNRISGAI-PDSYGSFSKLFTSMTISRNRLTG 188

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 2e-06
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 151 LNFTRIHFS------SLPSSLGCLINLQTLCLDYCRLK-DIAIVGQLKKLEILILARSTI 203
           LN   +  S            G   N Q + L    L  D+  VG  K L  L L  + I
Sbjct: 197 LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

Query: 204 K-QLPLEIGQLTRLQLLDLSN 223
              LP  + QL  L  L++S 
Sbjct: 257 YGTLPQGLTQLKFLHSLNVSF 277

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 23/111 (20%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 148 LKVLNFTRIHFS-SLPSSLGCLINLQT-LCLDYCRLK-DI-AIVGQLKKLEILILARSTI 203
           L  + F     S ++P S G    L T + +   RL   I      L  L  + L+R+ +
Sbjct: 151 LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209

Query: 204 K-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
           +    +  G     Q + L+   L   +    +     L  L +  N   G
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDL-GK-VGLSKNLNGLDLRNNRIYG 258

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.2 bits (138), Expect = 9e-09
 Identities = 47/348 (13%), Positives = 114/348 (32%), Gaps = 24/348 (6%)

Query: 148 LKVLNFTRIHFSSLPSS-LGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARSTIK 204
             +LN ++ + S L +S +  L  L+ L + + R++ +  ++    ++LE L L+ + + 
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV 82

Query: 205 QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASL 264
           ++         L+ LDLS      +        +SQL+ L +  +      +E  S   +
Sbjct: 83  KIS--CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-----HLEKSSVLPI 135

Query: 265 VELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMM 324
             L     L  L     + +  P        +   I       ++    ++      +  
Sbjct: 136 AHLNISKVLLVLGETYGE-KEDPEGLQDFNTESLHIV---FPTNKEFHFILDVSVKTVAN 191

Query: 325 LKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSE 384
           L+      +L++N  +  L    +      L  +     E      F R+  L   +   
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW-NSFIRILQLVWHTTVW 250

Query: 385 ILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKE-------I 437
              I     + + + R ++ +  S ++      +        Q   +            +
Sbjct: 251 YFSISNVKLQGQLDFRDFDYSGTS-LKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTV 309

Query: 438 WHGQALPVSFFNNLFDLVVDDCTNMS-SAIPANLLRCLNNLVYLEVRN 484
              + + +   + +   +  D +N   +         L  L  L ++ 
Sbjct: 310 SGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQM 357

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 54.5 bits (131), Expect = 6e-08
 Identities = 27/131 (20%), Positives = 43/131 (32%), Gaps = 6/131 (4%)

Query: 124 LELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLK 182
           L +     D       + ++    + + NFT      +       +     L      L 
Sbjct: 278 LSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLT 337

Query: 183 DIA--IVGQLKKLEILILARSTIKQLPLEIG---QLTRLQLLDLSNCWLLEVIAPNVISK 237
           D      G L +LE LIL  + +K+L        Q+  LQ LD+S   +         S 
Sbjct: 338 DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW 397

Query: 238 LSQLEELYMGN 248
              L  L M +
Sbjct: 398 TKSLLSLNMSS 408

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 1e-05
 Identities = 16/98 (16%), Positives = 45/98 (45%), Gaps = 1/98 (1%)

Query: 151 LNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEI 210
           ++   + +           +L +L +    L D        ++++L L  + IK +P ++
Sbjct: 381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQV 440

Query: 211 GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            +L  LQ L++++  L   +   +  +L+ L+++++  
Sbjct: 441 VKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHT 477

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 54.8 bits (132), Expect = 4e-08
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 10/132 (7%)

Query: 148 LKVLNFTRIHFSSLPS--SLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILILARSTI 203
             +L+ +  + S L +  +   L NL +L L +  L  I+      +  L  L L+ + +
Sbjct: 41  TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100

Query: 204 KQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSGWEKVEGGSN 261
             L   +   L  L++L L N   + V+  N    ++QL++LY+  N  S   +      
Sbjct: 101 HTLDEFLFSDLQALEVLLLYNN-HIVVVDRNAFEDMAQLQKLYLSQNQIS---RFPVELI 156

Query: 262 ASLVELERLTKL 273
               +L +L  L
Sbjct: 157 KDGNKLPKLMLL 168

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 20/134 (14%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           ++  N    +  SL + +    NL+ L L + ++ D++ +  L KLE L + R+ +K   
Sbjct: 43  VQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKN-- 99

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNA--SLV 265
           L       L  L L N  L +    + +  L  LE L + N            N   S+V
Sbjct: 100 LNGIPSACLSRLFLDNNELRDT---DSLIHLKNLEILSIRN------------NKLKSIV 144

Query: 266 ELERLTKLATLEIE 279
            L  L+KL  L++ 
Sbjct: 145 MLGFLSKLEVLDLH 158

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 26/120 (21%), Positives = 45/120 (37%), Gaps = 12/120 (10%)

Query: 163 SSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLS 222
                L N     L    + D+    +L  ++      S I+ L   +   T L+ L LS
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLS 71

Query: 223 NCWLLEVIAPNVISKLSQLEELYMG-NSFSGWEKVEGGSNASLVELE----RLTKLATLE 277
           +   +  ++P  +  L++LEEL +  N       + G  +A L  L      L    +L 
Sbjct: 72  HN-QISDLSP--LKDLTKLEELSVNRNRLK---NLNGIPSACLSRLFLDNNELRDTDSLI 125

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 46/232 (19%), Positives = 89/232 (38%), Gaps = 31/232 (13%)

Query: 63  FPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCP 122
           FP   L       L ++ + ++ +  +L   ++          +     IQ L       
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKEL-SGVQN--------FNGDNSNIQSLAGMQFFT 63

Query: 123 CLELLHTEGDGSMQVSD-HFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRL 181
            L+ LH   +   Q+SD    K    L+ L+  R    +L + +     L  L LD   L
Sbjct: 64  NLKELHLSHN---QISDLSPLKDLTKLEELSVNRNRLKNL-NGIPSA-CLSRLFLDNNEL 118

Query: 182 KDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL 241
           +D   +  LK LEIL +  + +K +   +G L++L++LDL    +        +++L ++
Sbjct: 119 RDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT---GGLTRLKKV 174

Query: 242 EELYM-GNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVS 292
             + + G             N  +     L    T++    D   + P ++S
Sbjct: 175 NWIDLTGQKC---------VNEPVKYQPELYITNTVKDP--DGRWISPYYIS 215

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L++L+       S+   LG L  L+ L L    + +   + +LKK+  + L        P
Sbjct: 130 LEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEP 188

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELY 245
           ++      L + +         I+P  IS      +  
Sbjct: 189 VKY--QPELYITNTVKDPDGRWISPYYISNGGSYVDGC 224

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 8/101 (7%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  L+      + +   +  L  L  L      +  + +  Q   L  L    + +  L 
Sbjct: 44  LTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTLDL-SQNTNLTYLACDSNKLTNLD 101

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
             +  LT+L  L+     L ++     +S+   L  L    
Sbjct: 102 --VTPLTKLTYLNCDTNKLTKL----DVSQNPLLTYLNCAR 136

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 168 LINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLL 227
           L  L +L      + D+  + +L  L  LI   + I  L L   Q T L  L   +  L 
Sbjct: 41  LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLDL--SQNTNLTYLACDSNKLT 98

Query: 228 EVIAPNVISKLSQLEELYMGN 248
            +     ++ L++L  L    
Sbjct: 99  NLD----VTPLTKLTYLNCDT 115

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 48.1 bits (115), Expect = 5e-06
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 8/113 (7%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEI 195
           +++         L  LN  R   + +   +     L  L     +      V    +L  
Sbjct: 117 KLTKLDVSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTT 174

Query: 196 LILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           L  + + I +L   + Q   L  L+     + ++     +++  QL  L   +
Sbjct: 175 LDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSS 221

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 10/102 (9%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L   + +    + L  S   L  L TL      L +I +     +L          +++ 
Sbjct: 235 LTYFDCSVNPLTELDVST--LSKLTTLHCIQTDLLEIDL-THNTQLIYFQA--EGCRKIK 289

Query: 208 -LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            L++   T+L LLD     + E+     +S+  +L  LY+ N
Sbjct: 290 ELDVTHNTQLYLLDCQAAGITEL----DLSQNPKLVYLYLNN 327

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.8 bits (114), Expect = 7e-06
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           L  L+       +    +     L TL   + ++ ++ +  Q K L  L    + I +L 
Sbjct: 150 LTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELDV-SQNKLLNRLNCDTNNITKLD 207

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           L   Q  +L  LD S+  L E+     ++ L+QL       
Sbjct: 208 L--NQNIQLTFLDCSSNKLTEID----VTPLTQLTYFDCSV 242

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.6 bits (126), Expect = 3e-07
 Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 9/143 (6%)

Query: 146 EGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQ 205
            GLK L  +    +SLP        L+ L +   RL  +        L  L + R+ + +
Sbjct: 221 SGLKELIVSGNRLTSLPVLPS---ELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTR 275

Query: 206 LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG--SNAS 263
           LP  +  L+    ++L    L E        +       Y G                 +
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSER--TLQALREITSAPGYSGPIIRFDMAGASAPRETRA 333

Query: 264 LVELERLTKLATLEIEVADAEIL 286
           L        +   E E A A+  
Sbjct: 334 LHLAAADWLVPAREGEPAPADRW 356

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 147 GLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQL 206
           G  VLN      ++LP  L    ++ TL +    L  +       +L  L ++ + +  L
Sbjct: 41  GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSL 96

Query: 207 PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           P+    L  L +       L  +         S L +L++  
Sbjct: 97  PVLPPGLLELSIFSNPLTHLPAL--------PSGLCKLWIFG 130

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 2e-06
 Identities = 25/124 (20%), Positives = 44/124 (35%), Gaps = 25/124 (20%)

Query: 146 EGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQ 205
            GL+ L+ +    +SLP+       L  L     RL  +        L+ LI++ + +  
Sbjct: 181 SGLQELSVSDNQLASLPTLPS---ELYKLWAYNNRLTSLP--ALPSGLKELIVSGNRLTS 235

Query: 206 LPLEIGQLTRLQL-----------------LDLSNCWLLEVIAPNVISKLSQLEELYM-G 247
           LP+   +L  L +                 L +    L  +  P  +  LS    + + G
Sbjct: 236 LPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRL--PESLIHLSSETTVNLEG 293

Query: 248 NSFS 251
           N  S
Sbjct: 294 NPLS 297

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 29/121 (23%)

Query: 146 EGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLEI--------- 195
            GL  L       +SLP        LQ L +   +L  + A+  +L KL           
Sbjct: 121 SGLCKLWIFGNQLTSLPVLPP---GLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP 177

Query: 196 --------LILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG 247
                   L ++ + +  LP    +L +L   +     L  +         S L+EL + 
Sbjct: 178 MLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALP--------SGLKELIVS 229

Query: 248 N 248
            
Sbjct: 230 G 230

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 34/130 (26%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI---------------AIVGQLKK 192
           L+ L  +    +SLP     L+ L         L  +               ++      
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPG 142

Query: 193 LEILILARSTIKQLPLEIGQLTRLQL-----------------LDLSNCWLLEVIAPNVI 235
           L+ L ++ + +  LP    +L +L                   L +S+  L  +  P + 
Sbjct: 143 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL--PTLP 200

Query: 236 SKLSQLEELY 245
           S+L +L    
Sbjct: 201 SELYKLWAYN 210

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 24/140 (17%), Positives = 41/140 (29%), Gaps = 9/140 (6%)

Query: 121 CPCLELLHTEGDGSMQVSD----HFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCL 176
              LE+L+       ++S        +    L  +         L        NL+  C 
Sbjct: 191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCG 250

Query: 177 DYCRLKDIAI-----VGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIA 231
                          +   +KL  L L+     ++P+      +++ LDL    L     
Sbjct: 251 GSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 232 PNVISKLSQLEELYMGNSFS 251
             +I K   LE L   N   
Sbjct: 311 CTLIQKCPNLEVLETRNVIG 330

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 62/467 (13%), Positives = 143/467 (30%), Gaps = 92/467 (19%)

Query: 120 QCPCLELLHTEG-----DGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTL 174
               L+ +H            +++       E LK+   +      L S +     ++TL
Sbjct: 110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTL 169

Query: 175 CLDYCRLKDI------AIVGQLKKLEILILARSTIKQLPLE-----IGQLTRLQLLDLSN 223
            ++     +        +      LE+L    +   ++  +           L  + + +
Sbjct: 170 LMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD 229

Query: 224 CWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADA 283
             +LE++        + LEE   G+        E   N  LV   +L +L    +     
Sbjct: 230 FEILELVG--FFKAAANLEEFCGGSLNEDIGMPEKYMN--LVFPRKLCRLGLSYM--GPN 283

Query: 284 EILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMML--------KGLEKVSILQ 335
           E+      + ++++  +       ++   L+   + P L +L        +GLE ++   
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLI--QKCPNLEVLETRNVIGDRGLEVLAQYC 341

Query: 336 EN------DGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEI---- 385
           +       +         +   L +  G+ ++       +G   L+++ V   S+I    
Sbjct: 342 KQLKRLRIERGADEQGMEDEEGLVSQRGLIAL------AQGCQELEYMAV-YVSDITNES 394

Query: 386 LHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPV 445
           L  +G+  +   + R    +    I       +   + +   L    +L+          
Sbjct: 395 LESIGTYLKNLCDFRLVLLDREERI-----TDLPLDNGVRSLLIGCKKLRRF-------- 441

Query: 446 SFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHI 505
                           ++    + + +   N+ ++ +      +E L             
Sbjct: 442 --------AFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGL----------MEF 483

Query: 506 GPLFPKLFKLRLTDLPKLKRFCNFTRNIIE-----LPKLRYLTIENC 547
               P L KL +         C F+   I      LP LRYL ++  
Sbjct: 484 SRGCPNLQKLEMRG-------CCFSERAIAAAVTKLPSLRYLWVQGY 523

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 30/130 (23%), Positives = 55/130 (42%), Gaps = 12/130 (9%)

Query: 151 LNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEI 210
           L+        + ++L  L   + L L    ++ I+ +  ++ L IL L R+ IK++    
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLD 89

Query: 211 GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMG-NSFSGWEKVEGGSNASLVELER 269
                L+ L +S    +  ++   I KL  L  LYM  N  + W +++        +L  
Sbjct: 90  AVADTLEELWISYN-QIASLSG--IEKLVNLRVLYMSNNKITNWGEID--------KLAA 138

Query: 270 LTKLATLEIE 279
           L KL  L + 
Sbjct: 139 LDKLEDLLLA 148

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 56/398 (14%), Positives = 121/398 (30%), Gaps = 27/398 (6%)

Query: 99  RKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKG-TEGLKVLNFTRIH 157
            + PI  S  +     L      P    L +  D S +   H  K      K L+ ++  
Sbjct: 4   DRKPIVGSFHFVCALALIVGSMTPFSNELESMVDYSNRNLTHVPKDLPPRTKALSLSQNS 63

Query: 158 FSSLPSS-LGCLINLQTLCLDYCRLKDIAIV--GQLKKLEILILARSTIKQLPLEIGQLT 214
            S L    +  L  L+ L L + R++ +        + LE L ++ + ++ +      + 
Sbjct: 64  ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS--CCPMA 121

Query: 215 RLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLA 274
            L+ LDLS      +        L++L  L +    + + +++    A L     L  L 
Sbjct: 122 SLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA--AKFRQLDLLPVAHLHLSCILLDLV 179

Query: 275 TLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL 334
           +  I+  + E L             + +       F   +  S      +     K++  
Sbjct: 180 SYHIKGGETESLQ------IPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDE 233

Query: 335 QENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRR 394
                   L + T G  L  +             + F       V+     L+I      
Sbjct: 234 NCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY----LNIYNLTIT 289

Query: 395 EEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKE-------IWHGQALPVSF 447
           E  +   +     + ++    E +  +  +  + + +    E       I     + +  
Sbjct: 290 ERIDREEF-TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 448 FNNLFDL-VVDDCTNMSSAIPANLLRCLNNLVYLEVRN 484
             +      ++   N+ +         L  L  L ++ 
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQR 386

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 28/145 (19%), Positives = 53/145 (36%), Gaps = 7/145 (4%)

Query: 110 GGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTE--GLKVLNFTRIHFSSLPSSL-G 166
            G ++    L                   +  FKG E  G+K  + ++    +L  S+  
Sbjct: 237 AGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS 296

Query: 167 CLINLQTLCLDYCRLKDIA--IVGQLKKLEILILARSTIKQLPLEI-GQLTRLQLLDLSN 223
              +L+ L L    +  I       L  L  L L+++ +  +   +   L +L++LDLS 
Sbjct: 297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSY 356

Query: 224 CWLLEVIAPNVISKLSQLEELYMGN 248
              +  +       L  L+EL +  
Sbjct: 357 N-HIRALGDQSFLGLPNLKELALDT 380

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 7/114 (6%)

Query: 142 FKGTEGLKVLNFT--RIHFSSLPSSLGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILI 197
           F   + L+ L             ++   L +L  L LDY +   +       L  LE+L 
Sbjct: 50  FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT 109

Query: 198 LARSTIKQLPLEIG---QLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           L +  +    L       LT L++L L +  + ++   +    + +   L +  
Sbjct: 110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 9/107 (8%)

Query: 147 GLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI---AIVGQLKKLEILILARS-T 202
             +    T      +PS      + QTL L    L+ I   A    L  +  + ++   T
Sbjct: 12  QEEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAFSN-LPNISRIYVSIDVT 67

Query: 203 IKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           ++QL       L+++  +++ N   L  I P+ + +L  L+ L + N
Sbjct: 68  LQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 33/114 (28%), Gaps = 7/114 (6%)

Query: 142 FKGTEGLKVLNFTRIHFSSLP--SSLGCLINLQTLCL-DYCRLKDI---AIVGQLKKLEI 195
            K    LK L          P  + +        L + D   +  I   A  G   +   
Sbjct: 101 LKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLT 160

Query: 196 LILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKL-SQLEELYMGN 248
           L L  +    +       T+L  + L+    L VI  +    + S    L +  
Sbjct: 161 LKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ 214

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 22/115 (19%), Positives = 47/115 (40%), Gaps = 4/115 (3%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEI 195
           + D  FK  + L  L       S + P +   L+ L+ L L   +LK++      K L+ 
Sbjct: 67  IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-EKMPKTLQE 125

Query: 196 LILARSTIKQLPLEI-GQLTRLQLLDLS-NCWLLEVIAPNVISKLSQLEELYMGN 248
           L +  + I ++   +   L ++ +++L  N      I       + +L  + + +
Sbjct: 126 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIAD 180

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 25/107 (23%), Positives = 45/107 (42%), Gaps = 8/107 (7%)

Query: 146 EGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKDI---AIVGQLKKLEILILARS 201
               +L+      + +       L NL TL L   ++  I   A    L KLE L L+++
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSKN 110

Query: 202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            +K+LP        LQ L +     +  +  +V + L+Q+  + +G 
Sbjct: 111 QLKELP--EKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGT 154

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 18/110 (16%), Positives = 41/110 (37%), Gaps = 8/110 (7%)

Query: 147 GLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILILARSTI 203
            L  L+      + + + SL  L NL  L L +  +  +    +     L  L L  + +
Sbjct: 193 SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 204 KQLPLEIGQLTRLQLLDLSNCWLLEV-----IAPNVISKLSQLEELYMGN 248
            ++P  +     +Q++ L N  +  +       P   +K +    + + +
Sbjct: 253 VKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 22/101 (21%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 150 VLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQL-PL 208
           VL+ +R +   L         L+ L      L  IA + +L KL+ L L+ + +     +
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEV 82

Query: 209 EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELY-MGN 248
              +   L  L+LS   + ++     + KL  L+ L     
Sbjct: 83  LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 47.9 bits (114), Expect = 5e-06
 Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 14/155 (9%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSLPSSLGC-LINLQTLCLDY-CRLKDI---AIVGQLK 191
           ++   F+    L+ L  +      LP       +    L +     +  I   + VG   
Sbjct: 95  INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSF 154

Query: 192 KLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN--- 248
           +  IL L ++ I+++       T+L  L+LS+   LE +  +V    S    L +     
Sbjct: 155 ESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI 214

Query: 249 ------SFSGWEKVEGGSNASLVELERLTKLATLE 277
                      +K+   S  +L +L  L KL  L 
Sbjct: 215 HSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALM 249

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.5 bits (108), Expect = 7e-06
 Identities = 24/100 (24%), Positives = 45/100 (45%), Gaps = 1/100 (1%)

Query: 150 VLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQL-PL 208
           VL+  + +   +       +NL+ L L    L  ++ + +L KL+ L L+ + I     +
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDM 89

Query: 209 EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
              +L  L  L+LS   L ++     + KL  L+ L + N
Sbjct: 90  LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI-AIVGQLKKLE----ILILARST 202
           L+VL+      + LP       +L+ L +    L+ + A+  +    E          + 
Sbjct: 162 LEVLSVRNNQLTFLPELPE---SLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218

Query: 203 IKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE 254
           I  +P  I  L     + L +   L       +S+ +   + +    +    
Sbjct: 219 ITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQQTAQPDYHGPRIYFSMS 269

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 47.3 bits (112), Expect = 1e-05
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           LK L+      + LP        L+ +  D  +L  +        LE+L +  + +  LP
Sbjct: 122 LKHLDVDNNQLTMLPELPA---LLEYINADNNQLTMLP--ELPTSLEVLSVRNNQLTFLP 176

Query: 208 LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG 252
                L     LD+S   L  +  P V  +    EE  +      
Sbjct: 177 ELPESLEA---LDVSTNLLESL--PAVPVRNHHSEETEIFFRCRE 216

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 12/127 (9%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRL------KDIAIVGQ 189
           +++       GLKVL+  + H  +     +     L TL L                  +
Sbjct: 140 LAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199

Query: 190 LKKLEILILARSTIKQLPLEIGQL----TRLQLLDLSNCWLLEVIAPNVISKLSQLEELY 245
              L++L L  + ++        L     +LQ LDLS+  L +          SQL  L 
Sbjct: 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 246 M-GNSFS 251
           +      
Sbjct: 260 LSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 29/113 (25%), Positives = 47/113 (41%), Gaps = 13/113 (11%)

Query: 148 LKVLNFTRIHFSSLP----SSLGCLINLQTLCLDYCRLKDIAIVGQ---LKKLEILILAR 200
           L+VL        +      +     + LQ L L +  L+D A         +L  L L+ 
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 201 STIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM-GNSFSG 252
           + +KQ+P  +    +L +LDLS   L    +P    +L Q+  L + GN F  
Sbjct: 263 TGLKQVPKGLPA--KLSVLDLSYNRLDRNPSP---DELPQVGNLSLKGNPFLD 310

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 21/106 (19%), Positives = 42/106 (39%), Gaps = 8/106 (7%)

Query: 147 GLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKDI---AIVGQLKKLEILILARST 202
              +L+      S L       L +L  L L   ++  I   A    L+KL+ L ++++ 
Sbjct: 55  DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSP-LRKLQKLYISKNH 113

Query: 203 IKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           + ++P      + L  L + +   +  +   V S L  +  + MG 
Sbjct: 114 LVEIPP--NLPSSLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMGG 156

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 5/115 (4%)

Query: 137 VSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIAIVGQLKKLEI 195
           +    FKG + L  L       S +   +   L  LQ L +    L +I        L  
Sbjct: 69  LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIP-PNLPSSLVE 127

Query: 196 LILARSTIKQLPLEI-GQLTRLQLLDLS-NCWLLEVIAPNVISKLSQLEELYMGN 248
           L +  + I+++P  +   L  +  +++  N        P     L  L  L +  
Sbjct: 128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLK-LNYLRISE 181

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 20/132 (15%), Positives = 48/132 (36%), Gaps = 10/132 (7%)

Query: 148 LKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIA--IVGQLKKLEILILARSTIK 204
           L  L+       ++    L     L  L L + +++ I    +  L  L  L L  + + 
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254

Query: 205 QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVIS------KLSQLEELYMGNSFSGWEKVEG 258
           ++P  +  L  LQ++ L     +  +  N         K +    + + N+   + +V+ 
Sbjct: 255 RVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQP 313

Query: 259 GSNASLVELERL 270
            +   + +   +
Sbjct: 314 ATFRCVTDRLAI 325

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 24/126 (19%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 151 LNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKDIAIVG---QLKKLEILILARSTIKQL 206
           L    I    +P  +      L+ + L   ++ ++A       L+ L  L+L  + I +L
Sbjct: 39  LEQNTI--KVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKITEL 95

Query: 207 PLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLV 265
           P  +   L  LQLL L+    +  +  +    L  L  L + ++    + +  G+ + L 
Sbjct: 96  PKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNK--LQTIAKGTFSPLR 152

Query: 266 ELERLT 271
            ++ + 
Sbjct: 153 AIQTMH 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 6/102 (5%)

Query: 151 LNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVG---QLKKLEILILARSTIKQLP 207
           LN               L  L+ +     ++ DI   G       +  ++L  + ++ + 
Sbjct: 39  LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSNRLENVQ 97

Query: 208 LEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            ++   L  L+ L L +   +  +  +    LS +  L + +
Sbjct: 98  HKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYD 138

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 68/479 (14%), Positives = 134/479 (27%), Gaps = 86/479 (17%)

Query: 114 VLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQT 173
           V P  +     ++   E  G    +D        L    +    +  + +       L+ 
Sbjct: 56  VSPATVIRRFPKVRSVELKGKPHFADF------NLVPDGWGGYVYPWIEAMSSSYTWLEE 109

Query: 174 LCLDYCRLKD---IAIVGQLKKLEILILARS---TIKQLPLEIGQLTRLQLLDLSNCWLL 227
           + L    + D     I    K  ++L+L+     +   L         L+ LDL    + 
Sbjct: 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVD 169

Query: 228 EVIAP---NVISKLSQLEELYMGNSFSGWEKVEGGSNASLVEL-ERLTKLATLEIE--VA 281
           +V      +     + L  L +    S        S ++L  L  R   L +L++   V 
Sbjct: 170 DVSGHWLSHFPDTYTSLVSLNISCLASEV------SFSALERLVTRCPNLKSLKLNRAVP 223

Query: 282 DAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTK 341
             ++      + +L+                  +         L+ L             
Sbjct: 224 LEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCL------------- 270

Query: 342 MLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS----EILHIVGSVRREEG 397
                  G W      + +V           RL  L++   +    +++ ++    +   
Sbjct: 271 ------SGFWDAVPAYLPAV------YSVCSRLTTLNLSYATVQSYDLVKLLCQCPK--- 315

Query: 398 ELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHG----QALPVSFFNNLFD 453
            L+R                   +D+  L++          +     Q L VS       
Sbjct: 316 -LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL-VSVSMGCPK 373

Query: 454 L--VVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPK 511
           L  V+  C  M++A    + R   N+    +   +         E ++     I      
Sbjct: 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD 433

Query: 512 LFKLRL----TD---------LPKLKR----FCNFTRNIIE-----LPKLRYLTIENCP 548
           L +L L    TD           K++     F   +   +         LR L I +CP
Sbjct: 434 LRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 32/117 (27%), Positives = 53/117 (45%), Gaps = 5/117 (4%)

Query: 136 QVSDHFFKGTEGLKVLNFTRIHFSSLPSSL-GCLINLQTLCLDYCRLKDI--AIVGQLKK 192
            +SD  F+G   L  LN       +L + +   L  L TL L   +L  +   +   L +
Sbjct: 49  TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQ 108

Query: 193 LEILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           L+ L L  + +K LP  +  +LT+L+ L L+   L + I      KL+ L+ L +  
Sbjct: 109 LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLST 164

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 8/108 (7%)

Query: 145 TEGLKVLNFTRIHFSSLPSS-LGCLINLQTLCLDYCRLKDI--AIVGQLKKLEILILARS 201
           TE L  L  T +  ++L  +    L  L  L LDY +L+ +   +   L +L  L LA +
Sbjct: 37  TEKLD-LQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93

Query: 202 TIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            +  LPL +   LT+L  L L     L+ +   V  +L++L+EL +  
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNT 140

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 17/84 (20%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 167 CLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQ-LTRLQLLDLSNCW 225
            L     +      ++ +     L++L+ L++  + I ++   + Q L  L  L L+N  
Sbjct: 40  TLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

Query: 226 LLEVIAPNVISKLSQLEELY-MGN 248
           L+E+   + ++ L  L  L  + N
Sbjct: 100 LVELGDLDPLASLKSLTYLCILRN 123

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 43.4 bits (102), Expect = 2e-04
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 31  EKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIPNVADL 90
           E  R   + R   ++T+R  ++        +   + +L   E     E     +P     
Sbjct: 256 ETIRWAQELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKE 315

Query: 91  EKKMEETIRK---DPIAISL 107
           E  + +TI     +P  + +
Sbjct: 316 EDVLNKTIELSSGNPATLMM 335

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.6 bits (97), Expect = 5e-04
 Identities = 25/107 (23%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 146 EGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCR-LKDI--AIVGQLKKLEILILARST 202
            G   L  TR         L    NL  L ++  + L+ +    +  L +L  L + +S 
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67

Query: 203 IKQLPLEIGQ-LTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN 248
           ++ +  +      RL  L+LS    LE ++   +  LS L+EL +  
Sbjct: 68  LRFVAPDAFHFTPRLSRLNLSFN-ALESLSWKTVQGLS-LQELVLSG 112

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 7e-04
 Identities = 15/89 (16%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 162 PSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILAR-STIKQLPLE-IGQLTRLQLL 219
           P +     +    C     L  +  +   + L  L +     ++ L L  +  L  L+ L
Sbjct: 2   PDACCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNL 61

Query: 220 DLSNCWLLEVIAPNVISKLSQLEELYMGN 248
            +     L  +AP+      +L  L +  
Sbjct: 62  TIVKS-GLRFVAPDAFHFTPRLSRLNLSF 89

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	606
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.98
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.97
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.96
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.94
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.94
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.94
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.93
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.93
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.92
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.92
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.92
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.92
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.89
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.89
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.86
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.86
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.86
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.84
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.84
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.84
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.84
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.83
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.82
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.8
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.8
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.79
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.79
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.78
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.78
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.78
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.77
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.76
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.75
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.75
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.74
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.74
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.73
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.73
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.67
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.67
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.65
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.64
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.64
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.63
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.63
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.62
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.62
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.62
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.6
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.6
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.6
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.59
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.58
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.58
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.57
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.57
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.56
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.56
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.5
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.5
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.48
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.42
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.41
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.4
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.4
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.39
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.38
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.35
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.35
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.34
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.34
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.33
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.27
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.23
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.21
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.14
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.11
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.07
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.87
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.79
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.76
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.54
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.5
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.42
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.32
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	98.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.02
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.93
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.87
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.85
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.77
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.2
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	96.75
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	96.7
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	95.11
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.31
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	93.99
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	92.85

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-30  Score=284.90  Aligned_cols=452  Identities=12%  Similarity=0.059  Sum_probs=265.3

Q ss_pred             CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l  176 (606)
                      ..+++|++++|.+..++. .. .+++|++|++++|.+..+....|.++++|++|++++|.+.. .|..++++++|++|++
T Consensus        33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  112 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF  112 (606)
T ss_dssp             TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred             CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence            468999999999977744 34 89999999999998888876667899999999999999988 5778999999999999


Q ss_pred             eCCCCCC--CcccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCC--EEEccCCCC
Q 007371          177 DYCRLKD--IAIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE--ELYMGNSFS  251 (606)
Q Consensus       177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~--~L~l~~~~~  251 (606)
                      ++|.++.  +..++++++|++|++++|.++.++ +.+..+++|++|++++|...+..|.. ++.+++|+  +|++++|.+
T Consensus       113 ~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          113 IQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED-MSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             TTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH-HHTTTTCCSEEEECTTCCC
T ss_pred             cccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh-hhhhcccceeEEecCCCcc
Confidence            9999888  578899999999999999988763 34445999999999997655444544 89999999  889998887


Q ss_pred             CCccccCCCc--------------------------------------------cchHhhccCCCCCEEEEeeCCCCCCC
Q 007371          252 GWEKVEGGSN--------------------------------------------ASLVELERLTKLATLEIEVADAEILP  287 (606)
Q Consensus       252 ~~~~~~~~~~--------------------------------------------~~~~~l~~l~~L~~L~l~~~~~~~~~  287 (606)
                      ....+..-..                                            ..+..+..+ +|+.|++.+|.+..++
T Consensus       192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~-~L~~L~l~~n~l~~~~  270 (606)
T 3t6q_A          192 AGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEM-SVESINLQKHYFFNIS  270 (606)
T ss_dssp             CEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGS-EEEEEECTTCCCSSCC
T ss_pred             CccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcC-ceeEEEeecCccCccC
Confidence            6554321100                                            000111111 4555555555555554


Q ss_pred             ccc-c-ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccc
Q 007371          288 PNF-V-SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHEL  365 (606)
Q Consensus       288 ~~~-~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  365 (606)
                      ... . .++|+.|++..+.  ...++..+..+++|+.|++++|.+.+..+  ..+. .+++|++|++++|.....++...
T Consensus       271 ~~~~~~l~~L~~L~l~~n~--l~~lp~~l~~l~~L~~L~l~~n~l~~~~~--~~~~-~l~~L~~L~l~~n~~~~~~~~~~  345 (606)
T 3t6q_A          271 SNTFHCFSGLQELDLTATH--LSELPSGLVGLSTLKKLVLSANKFENLCQ--ISAS-NFPSLTHLSIKGNTKRLELGTGC  345 (606)
T ss_dssp             TTTTTTCTTCSEEECTTSC--CSCCCSSCCSCTTCCEEECTTCCCSBGGG--GCGG-GCTTCSEEECCSCSSCCBCCSST
T ss_pred             HHHhccccCCCEEeccCCc--cCCCChhhcccccCCEEECccCCcCcCch--hhhh-ccCcCCEEECCCCCcccccchhh
Confidence            432 2 2566666653221  12344455566666666666655433221  1122 23566666666655443443321


Q ss_pred             cCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh------hhhhhccccccceeccccccccccc
Q 007371          366 DDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC------YEEMIGFRDIIHLQLSHFPRLKEIW  438 (606)
Q Consensus       366 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~------~~~~~~~~~L~~L~l~~~~~l~~~~  438 (606)
                        ++.+++|++|++++|.-- .+...     +.....+++|+. .+..+      +..+..+++|+.|++.++.-....+
T Consensus       346 --~~~l~~L~~L~l~~n~l~-~~~~~-----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          346 --LENLENLRELDLSHDDIE-TSDCC-----NLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             --TTTCTTCCEEECCSSCCC-EEEES-----TTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             --hhccCcCCEEECCCCccc-cccCc-----chhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence              225566666666655422 11100     000233444444 22222      1223344555557766654222111


Q ss_pred             cCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeec
Q 007371          439 HGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLT  518 (606)
Q Consensus       439 ~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~  518 (606)
                      .   ..+..+++|++|++++| .+....+ ..+..+++|++|++++|.--......        ...+..+++|+.|+++
T Consensus       418 ~---~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~--------~~~~~~l~~L~~L~Ls  484 (606)
T 3t6q_A          418 Q---SPFQNLHLLKVLNLSHS-LLDISSE-QLFDGLPALQHLNLQGNHFPKGNIQK--------TNSLQTLGRLEILVLS  484 (606)
T ss_dssp             C---CTTTTCTTCCEEECTTC-CCBTTCT-TTTTTCTTCCEEECTTCBCGGGEECS--------SCGGGGCTTCCEEECT
T ss_pred             c---hhhhCcccCCEEECCCC-ccCCcCH-HHHhCCCCCCEEECCCCCCCcccccc--------chhhccCCCccEEECC
Confidence            1   11355667777777764 4554433 23456677777777766522111100        1223456677777777


Q ss_pred             cccccccccccccccccCCCcceEeeccCCCCccccc-C---CccccccccC--------hhhhhhhccccceeeccc
Q 007371          519 DLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFIS-N---STSVLHMTAD--------NKEAQKLKSEKNLLVADQ  584 (606)
Q Consensus       519 ~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~-~---~~~~~~l~~~--------~~~~~~l~~l~~l~i~~~  584 (606)
                      +| +++.++.  .....+++|+.|++++|. +..++. .   ...+ .+++.        ...+..+++|+.+.++++
T Consensus       485 ~n-~l~~~~~--~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N  557 (606)
T 3t6q_A          485 FC-DLSSIDQ--HAFTSLKMMNHVDLSHNR-LTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN  557 (606)
T ss_dssp             TS-CCCEECT--TTTTTCTTCCEEECCSSC-CCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTC
T ss_pred             CC-ccCccCh--hhhccccCCCEEECCCCc-cCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCC
Confidence            66 4444432  244556677777776663 333321 1   1111 22221        123566778888877665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=5.8e-31  Score=287.38  Aligned_cols=432  Identities=17%  Similarity=0.173  Sum_probs=243.3

Q ss_pred             CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l  176 (606)
                      +.+++|++++|.+..++. .. ++++|++|++++|.+..++...|.++++|++|++++|.++.+ |..|+++++|++|++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  111 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA  111 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence            568888888888876665 23 788888888888887777666678888888888888888874 778888888888888


Q ss_pred             eCCCCCC--CcccCCCCCCCEeeecCCcCC--cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCC----EEEccC
Q 007371          177 DYCRLKD--IAIVGQLKKLEILILARSTIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE----ELYMGN  248 (606)
Q Consensus       177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~----~L~l~~  248 (606)
                      ++|.+..  +..++++++|++|++++|.++  .+|..++++++|++|++++|...+..|.. ++.+++|+    +|++++
T Consensus       112 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          112 VETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND-LQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             TTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT-THHHHHCTTCCCEEECTT
T ss_pred             cCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh-hhhhhccccccceeeccC
Confidence            8888777  367888888888888888877  46888888888888888887655444433 55555444    788888


Q ss_pred             CCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC--CCCccccc-cCCcEE---------------------------
Q 007371          249 SFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE--ILPPNFVS-VELQRY---------------------------  298 (606)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~-~~L~~L---------------------------  298 (606)
                      |.+...++        ..+ ...+|++|++++|...  .+|..+.. +.++.+                           
T Consensus       191 n~l~~~~~--------~~~-~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l  261 (606)
T 3vq2_A          191 NPIDFIQD--------QAF-QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV  261 (606)
T ss_dssp             CCCCEECT--------TTT-TTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGS
T ss_pred             CCcceeCc--------ccc-cCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhc
Confidence            87765553        222 2236777777766542  11111111 222222                           


Q ss_pred             -----EEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCC
Q 007371          299 -----RIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPR  373 (606)
Q Consensus       299 -----~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~  373 (606)
                           .+...+......+. +..+++|+.++++++... .++   ++.. +++|++|++.+|.. +.+|.    . .+++
T Consensus       262 ~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~---~l~~-~~~L~~L~l~~n~l-~~lp~----~-~l~~  329 (606)
T 3vq2_A          262 TIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE---DVPK-HFKWQSLSIIRCQL-KQFPT----L-DLPF  329 (606)
T ss_dssp             EEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC---CCCT-TCCCSEEEEESCCC-SSCCC----C-CCSS
T ss_pred             cHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh---hccc-cccCCEEEcccccC-ccccc----C-CCCc
Confidence                 22111222222222 455556666666665542 222   1211 35566666666544 44442    2 4556


Q ss_pred             CcEEEeecCCCceEeccccccccccccccccccch-hhhhh--------hhhhhccccccceeccccccccccccCCCCC
Q 007371          374 LKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC--------YEEMIGFRDIIHLQLSHFPRLKEIWHGQALP  444 (606)
Q Consensus       374 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~--------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  444 (606)
                      |++|++++|..+..+        +  ...+++|+. .+..+        +..+..+++|+.|++.++. +..++.    .
T Consensus       330 L~~L~l~~n~~~~~~--------~--~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~----~  394 (606)
T 3vq2_A          330 LKSLTLTMNKGSISF--------K--KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSA----N  394 (606)
T ss_dssp             CCEEEEESCSSCEEC--------C--CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECC----C
T ss_pred             cceeeccCCcCccch--------h--hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchh----h
Confidence            666666665444332        0  233444444 12111        3344455555557766654 333331    2


Q ss_pred             ccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccc
Q 007371          445 VSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLK  524 (606)
Q Consensus       445 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~  524 (606)
                      +..+++|+.|++++| ++....+...+..+++|++|++++|. +....          +..+..+++|++|++.+|.--.
T Consensus       395 ~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----------~~~~~~l~~L~~L~l~~n~l~~  462 (606)
T 3vq2_A          395 FMGLEELQHLDFQHS-TLKRVTEFSAFLSLEKLLYLDISYTN-TKIDF----------DGIFLGLTSLNTLKMAGNSFKD  462 (606)
T ss_dssp             CTTCTTCCEEECTTS-EEESTTTTTTTTTCTTCCEEECTTSC-CEECC----------TTTTTTCTTCCEEECTTCEEGG
T ss_pred             ccCCCCCCeeECCCC-ccCCccChhhhhccccCCEEECcCCC-CCccc----------hhhhcCCCCCCEEECCCCcCCC
Confidence            345566666666664 34444333334566666666666655 22211          1123345555555555542211


Q ss_pred             c-ccccccccccCCCcceEeeccCCCCccccc----CCccccccccCh--------hhhhhhccccceeeccc
Q 007371          525 R-FCNFTRNIIELPKLRYLTIENCPDMETFIS----NSTSVLHMTADN--------KEAQKLKSEKNLLVADQ  584 (606)
Q Consensus       525 ~-l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~----~~~~~~~l~~~~--------~~~~~l~~l~~l~i~~~  584 (606)
                      . ++   .....+++|+.|++++| +++.+++    ....++.+++..        ..+..+++|+.|.++++
T Consensus       463 ~~~~---~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N  531 (606)
T 3vq2_A          463 NTLS---NVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFN  531 (606)
T ss_dssp             GEEC---SCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTS
T ss_pred             cchH---HhhccCCCCCEEECCCC-cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCC
Confidence            1 22   13344455555555554 2333221    112233333222        24556788999999888

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.98  E-value=4e-31  Score=288.64  Aligned_cols=412  Identities=17%  Similarity=0.127  Sum_probs=266.8

Q ss_pred             CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l  176 (606)
                      +.+++|++++|.+..++. .. .+++|++|++++|.+..++...|.++++|++|++++|.+..++ ..++++++|++|++
T Consensus        56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  135 (606)
T 3vq2_A           56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV  135 (606)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred             ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence            889999999999977754 33 8999999999999998886666799999999999999999865 78999999999999


Q ss_pred             eCCCCCC---CcccCCCCCCCEeeecCCcCCccc-ccccCCCCCC----EEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371          177 DYCRLKD---IAIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQ----LLDLSNCWLLEVIAPNVISKLSQLEELYMGN  248 (606)
Q Consensus       177 ~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~----~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~  248 (606)
                      ++|.+..   |..++++++|++|++++|.++.++ ..++.+++|+    +|++++|.. ..++.. .....+|++|++++
T Consensus       136 ~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l-~~~~~~-~~~~~~L~~L~L~~  213 (606)
T 3vq2_A          136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI-DFIQDQ-AFQGIKLHELTLRG  213 (606)
T ss_dssp             CSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC-CEECTT-TTTTCEEEEEEEES
T ss_pred             CCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc-ceeCcc-cccCceeeeeeccC
Confidence            9999874   788999999999999999999764 4566655554    899999764 456655 34444899999888


Q ss_pred             CCCCCcc-------------------------------------------------ccCCCccchHhhccCCCCCEEEEe
Q 007371          249 SFSGWEK-------------------------------------------------VEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       249 ~~~~~~~-------------------------------------------------~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      |.+....                                                 ...........+..+++|+.|++.
T Consensus       214 n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~  293 (606)
T 3vq2_A          214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLA  293 (606)
T ss_dssp             CCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEE
T ss_pred             CccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEec
Confidence            8653100                                                 000001112225667778888888


Q ss_pred             eCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcc
Q 007371          280 VADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQ  359 (606)
Q Consensus       280 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (606)
                      ++.+..+|.....++|+.|++..+..  ..++ .+ .+++|+.|++++|........    . .+++|++|++++|....
T Consensus       294 ~~~~~~l~~l~~~~~L~~L~l~~n~l--~~lp-~~-~l~~L~~L~l~~n~~~~~~~~----~-~l~~L~~L~ls~n~l~~  364 (606)
T 3vq2_A          294 GVSIKYLEDVPKHFKWQSLSIIRCQL--KQFP-TL-DLPFLKSLTLTMNKGSISFKK----V-ALPSLSYLDLSRNALSF  364 (606)
T ss_dssp             SCCCCCCCCCCTTCCCSEEEEESCCC--SSCC-CC-CCSSCCEEEEESCSSCEECCC----C-CCTTCCEEECCSSCEEE
T ss_pred             CccchhhhhccccccCCEEEcccccC--cccc-cC-CCCccceeeccCCcCccchhh----c-cCCCCCEEECcCCccCC
Confidence            77777777222237778887754443  3333 33 677777777777644333311    1 24667777777654332


Q ss_pred             c--ccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhhh-------hhhhccccccceecc
Q 007371          360 S--VVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKCY-------EEMIGFRDIIHLQLS  429 (606)
Q Consensus       360 ~--~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~~-------~~~~~~~~L~~L~l~  429 (606)
                      .  ++..+.   .+++|++|++++|. +..+..        ....+++|+. .+..+.       ..+..+++|+.|++.
T Consensus       365 ~~~~~~~~~---~~~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  432 (606)
T 3vq2_A          365 SGCCSYSDL---GTNSLRHLDLSFNG-AIIMSA--------NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS  432 (606)
T ss_dssp             EEECCHHHH---CCSCCCEEECCSCS-EEEECC--------CCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECT
T ss_pred             Ccchhhhhc---cCCcccEeECCCCc-cccchh--------hccCCCCCCeeECCCCccCCccChhhhhccccCCEEECc
Confidence            2  133333   66677777777664 333310        0233445554 222221       133445556667777


Q ss_pred             ccccccccccCCCCCccccCCccEEEeccCCCccc-ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCC
Q 007371          430 HFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSS-AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPL  508 (606)
Q Consensus       430 ~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~  508 (606)
                      ++.-....+.    .++.+++|++|++++| .++. .+| ..+.++++|++|++++|. ++.++          +..+..
T Consensus       433 ~n~l~~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~----------~~~~~~  495 (606)
T 3vq2_A          433 YTNTKIDFDG----IFLGLTSLNTLKMAGN-SFKDNTLS-NVFANTTNLTFLDLSKCQ-LEQIS----------WGVFDT  495 (606)
T ss_dssp             TSCCEECCTT----TTTTCTTCCEEECTTC-EEGGGEEC-SCCTTCTTCCEEECTTSC-CCEEC----------TTTTTT
T ss_pred             CCCCCccchh----hhcCCCCCCEEECCCC-cCCCcchH-HhhccCCCCCEEECCCCc-CCccC----------hhhhcc
Confidence            7653332221    2356677777777775 3443 223 224567777777777764 44432          223456


Q ss_pred             CCccceEeeccccccccccccccccccCCCcceEeeccCCCCccccc
Q 007371          509 FPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFIS  555 (606)
Q Consensus       509 ~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~  555 (606)
                      +++|++|++++| +++.+.+  .....+++|+.|++++|. ++.+|.
T Consensus       496 l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~l~~N~-l~~~p~  538 (606)
T 3vq2_A          496 LHRLQLLNMSHN-NLLFLDS--SHYNQLYSLSTLDCSFNR-IETSKG  538 (606)
T ss_dssp             CTTCCEEECCSS-CCSCEEG--GGTTTCTTCCEEECTTSC-CCCEES
T ss_pred             cccCCEEECCCC-cCCCcCH--HHccCCCcCCEEECCCCc-CcccCH
Confidence            777777777777 4544422  355667777788877774 666664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.98  E-value=1.9e-31  Score=298.00  Aligned_cols=429  Identities=17%  Similarity=0.079  Sum_probs=269.8

Q ss_pred             CCCeEEEecCCCC-cccCC--cc-cccccceeeccccccc-ccchhHhcCCCCCcEEEeeCCcCcc-CCcc---ccCCCC
Q 007371          100 KDPIAISLTYGGI-QVLPE--RL-QCPCLELLHTEGDGSM-QVSDHFFKGTEGLKVLNFTRIHFSS-LPSS---LGCLIN  170 (606)
Q Consensus       100 ~~l~~L~l~~~~~-~~l~~--~~-~l~~L~~L~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~---~~~l~~  170 (606)
                      .++++|++++|.+ +.+|.  .. .+++|++|++++|... .+|..++.++++|++|++++|.++. .|..   +.++++
T Consensus       100 ~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~  179 (768)
T 3rgz_A          100 ASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGE  179 (768)
T ss_dssp             TTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTT
T ss_pred             CCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCC
Confidence            6778888888777 34554  33 7778888887777543 3444444677788888888887776 3333   677788


Q ss_pred             CcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCC
Q 007371          171 LQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSF  250 (606)
Q Consensus       171 L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~  250 (606)
                      |++|++++|.+.+...+.++++|++|++++|.+...++.++++++|++|++++|...+.+|.. ++.+++|++|++++|.
T Consensus       180 L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-l~~l~~L~~L~Ls~n~  258 (768)
T 3rgz_A          180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLLNISSNQ  258 (768)
T ss_dssp             CCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHH-TTTCSSCCEEECCSSC
T ss_pred             CCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHH-HhcCCCCCEEECCCCc
Confidence            888888888776633347788888888888877754444788888888888887766667766 7888888888888887


Q ss_pred             CCCccccCCCccchHhhccCCCCCEEEEeeCCCC-CCCccccc--cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecC
Q 007371          251 SGWEKVEGGSNASLVELERLTKLATLEIEVADAE-ILPPNFVS--VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKG  327 (606)
Q Consensus       251 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~  327 (606)
                      +....+.         . .+++|++|++++|.+. .+|..+..  ++|+.|++. ++......+..+..+++|+.|++++
T Consensus       259 l~~~~~~---------~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls-~n~l~~~~p~~~~~l~~L~~L~L~~  327 (768)
T 3rgz_A          259 FVGPIPP---------L-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLS-GNHFYGAVPPFFGSCSLLESLALSS  327 (768)
T ss_dssp             CEESCCC---------C-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECC-SSEEEECCCGGGGGCTTCCEEECCS
T ss_pred             ccCccCc---------c-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECc-CCcCCCccchHHhcCCCccEEECCC
Confidence            6544431         1 6677777777777765 56666543  677777773 2333334555667777777777777


Q ss_pred             cccccccccchhHHHhhccccceecccccCcccccccccCCCCCC-CCcEEEeecCCCceEecccccccccccccccccc
Q 007371          328 LEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFP-RLKHLHVKSCSEILHIVGSVRREEGELRRWEGNL  406 (606)
Q Consensus       328 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~-~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L  406 (606)
                      |.+.+.++  ......+++|++|++++|.....+|..+.   .++ +|++|++++|.--..+....    .  ...+++|
T Consensus       328 n~l~~~ip--~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~---~l~~~L~~L~Ls~N~l~~~~~~~~----~--~~~~~~L  396 (768)
T 3rgz_A          328 NNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLT---NLSASLLTLDLSSNNFSGPILPNL----C--QNPKNTL  396 (768)
T ss_dssp             SEEEEECC--HHHHTTCTTCCEEECCSSEEEECCCTTHH---HHTTTCSEEECCSSEEEEECCTTT----T--CSTTCCC
T ss_pred             CcccCcCC--HHHHhcCCCCCEEeCcCCccCccccHHHH---hhhcCCcEEEccCCCcCCCcChhh----h--hcccCCc
Confidence            76644433  22122346777777777765555665554   454 77777777664322221000    0  1114455


Q ss_pred             ch-hhhhh------hhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcE
Q 007371          407 NS-TIQKC------YEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVY  479 (606)
Q Consensus       407 ~~-~i~~~------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~  479 (606)
                      +. .+..|      +..+..+++|+.|++.++.--..++    ..++.+++|+.|++++| .+....|.. +..+++|++
T Consensus       397 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p----~~l~~l~~L~~L~L~~n-~l~~~~p~~-~~~l~~L~~  470 (768)
T 3rgz_A          397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP----SSLGSLSKLRDLKLWLN-MLEGEIPQE-LMYVKTLET  470 (768)
T ss_dssp             CEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC----GGGGGCTTCCEEECCSS-CCCSCCCGG-GGGCTTCCE
T ss_pred             cEEECCCCccccccCHHHhcCCCCCEEECcCCcccCccc----HHHhcCCCCCEEECCCC-cccCcCCHH-HcCCCCceE
Confidence            55 22222      2345556666667777764322333    22466777888888775 354443433 467778888


Q ss_pred             EEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccccCCcc
Q 007371          480 LEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTS  559 (606)
Q Consensus       480 L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~~~~  559 (606)
                      |++++|.-...++           ..+..+++|++|++++|.-...+|.   ++..+++|+.|++++|.-...+|     
T Consensus       471 L~L~~N~l~~~~p-----------~~l~~l~~L~~L~L~~N~l~~~~p~---~~~~l~~L~~L~L~~N~l~~~~p-----  531 (768)
T 3rgz_A          471 LILDFNDLTGEIP-----------SGLSNCTNLNWISLSNNRLTGEIPK---WIGRLENLAILKLSNNSFSGNIP-----  531 (768)
T ss_dssp             EECCSSCCCSCCC-----------GGGGGCTTCCEEECCSSCCCSCCCG---GGGGCTTCCEEECCSSCCEEECC-----
T ss_pred             EEecCCcccCcCC-----------HHHhcCCCCCEEEccCCccCCcCCh---HHhcCCCCCEEECCCCcccCcCC-----
Confidence            8887765332332           2345678888888888754335544   66677888888888875443554     


Q ss_pred             ccccccChhhhhhhccccceeeccc
Q 007371          560 VLHMTADNKEAQKLKSEKNLLVADQ  584 (606)
Q Consensus       560 ~~~l~~~~~~~~~l~~l~~l~i~~~  584 (606)
                              ..+..+++|+.|.++++
T Consensus       532 --------~~l~~l~~L~~L~Ls~N  548 (768)
T 3rgz_A          532 --------AELGDCRSLIWLDLNTN  548 (768)
T ss_dssp             --------GGGGGCTTCCEEECCSS
T ss_pred             --------HHHcCCCCCCEEECCCC
Confidence                    23456777777777776

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=3.7e-31  Score=295.67  Aligned_cols=439  Identities=15%  Similarity=0.122  Sum_probs=247.9

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEee
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILI  197 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~  197 (606)
                      .+++|++|++++|.+...... +.++++|++|++++|.++. +|..++++++|++|++++|.+.+ ++.. .+++|++|+
T Consensus       198 ~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~L~~L~  275 (768)
T 3rgz_A          198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL-PLKSLQYLS  275 (768)
T ss_dssp             TCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC-CCTTCCEEE
T ss_pred             cCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc-ccCCCCEEE
Confidence            344444444444443332222 3444455555555554443 44444445555555555554443 1111 445555555


Q ss_pred             ecCCcCC-cccccccCC-CCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCE
Q 007371          198 LARSTIK-QLPLEIGQL-TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLAT  275 (606)
Q Consensus       198 l~~~~l~-~lp~~i~~L-~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  275 (606)
                      +++|.++ .+|..+..+ ++|++|++++|...+.+|.. ++++++|++|++++|.+.+..+       ...++++++|++
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~-~~~l~~L~~L~L~~n~l~~~ip-------~~~l~~l~~L~~  347 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF-FGSCSLLESLALSSNNFSGELP-------MDTLLKMRGLKV  347 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGG-GGGCTTCCEEECCSSEEEEECC-------HHHHTTCTTCCE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchH-HhcCCCccEEECCCCcccCcCC-------HHHHhcCCCCCE
Confidence            5555444 555555553 66666666666665566655 6667777777777666543322       133777777777


Q ss_pred             EEEeeCCCC-CCCccccc-c-CCcEEEEEeCCCCCCCCCCcccC--CCCCcEEEecCcccccccccchhHHHhhccccce
Q 007371          276 LEIEVADAE-ILPPNFVS-V-ELQRYRIRIGDESEDEFDPLLVK--SEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGL  350 (606)
Q Consensus       276 L~l~~~~~~-~~~~~~~~-~-~L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L  350 (606)
                      |++++|.+. .+|..+.. . +|+.|++.. +......+..+..  +++|+.|++++|.+.+.++  .++.. +++|+.|
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p--~~l~~-l~~L~~L  423 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSASLLTLDLSS-NNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP--PTLSN-CSELVSL  423 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTTTCSEEECCS-SEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC--GGGGG-CTTCCEE
T ss_pred             EeCcCCccCccccHHHHhhhcCCcEEEccC-CCcCCCcChhhhhcccCCccEEECCCCccccccC--HHHhc-CCCCCEE
Confidence            777777764 56665543 3 777777732 2222222333333  5667777777776654432  23332 4777788


Q ss_pred             ecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhh------hhhhhhccccc
Q 007371          351 WLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQK------CYEEMIGFRDI  423 (606)
Q Consensus       351 ~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~------~~~~~~~~~~L  423 (606)
                      ++++|.....+|..+.   .+++|++|++++|.....+        +.....+++|+. .+..      .+..+..+++|
T Consensus       424 ~Ls~N~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~--------p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L  492 (768)
T 3rgz_A          424 HLSFNYLSGTIPSSLG---SLSKLRDLKLWLNMLEGEI--------PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL  492 (768)
T ss_dssp             ECCSSEEESCCCGGGG---GCTTCCEEECCSSCCCSCC--------CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTC
T ss_pred             ECcCCcccCcccHHHh---cCCCCCEEECCCCcccCcC--------CHHHcCCCCceEEEecCCcccCcCCHHHhcCCCC
Confidence            8877766666666655   7777888888777533222        111334555555 2222      23456667778


Q ss_pred             cceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccc------
Q 007371          424 IHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEEL------  497 (606)
Q Consensus       424 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~------  497 (606)
                      +.|++.++.-...++..    ++.+++|++|++++| ++....|.. +.++++|++|++++|+-...+|..-..      
T Consensus       493 ~~L~L~~N~l~~~~p~~----~~~l~~L~~L~L~~N-~l~~~~p~~-l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~  566 (768)
T 3rgz_A          493 NWISLSNNRLTGEIPKW----IGRLENLAILKLSNN-SFSGNIPAE-LGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA  566 (768)
T ss_dssp             CEEECCSSCCCSCCCGG----GGGCTTCCEEECCSS-CCEEECCGG-GGGCTTCCEEECCSSEEESBCCGGGGTTTTCBC
T ss_pred             CEEEccCCccCCcCChH----HhcCCCCCEEECCCC-cccCcCCHH-HcCCCCCCEEECCCCccCCcCChHHhcccchhh
Confidence            88888887644444432    467889999999996 455443544 578899999999887643333321000      


Q ss_pred             -----------------------------------------------------cccccCCCCCCCCccceEeeccccccc
Q 007371          498 -----------------------------------------------------INADKEHIGPLFPKLFKLRLTDLPKLK  524 (606)
Q Consensus       498 -----------------------------------------------------~~~~~~~~~~~~~~L~~L~l~~c~~L~  524 (606)
                                                                           .....+..+..+++|+.|+++++.--.
T Consensus       567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g  646 (768)
T 3rgz_A          567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSG  646 (768)
T ss_dssp             CSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBS
T ss_pred             hhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccc
Confidence                                                                 000012234556788888888874333


Q ss_pred             cccccccccccCCCcceEeeccCCCCcccccC---CccccccccChh--------hhhhhccccceeeccc-chhhhccC
Q 007371          525 RFCNFTRNIIELPKLRYLTIENCPDMETFISN---STSVLHMTADNK--------EAQKLKSEKNLLVADQ-IQHLFNEK  592 (606)
Q Consensus       525 ~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~---~~~~~~l~~~~~--------~~~~l~~l~~l~i~~~-~~~~~~~~  592 (606)
                      .+|.   .+..+++|+.|+++++.--..+|..   ...++.+++...        .+..+++|+.|.++.+ ....+|+.
T Consensus       647 ~ip~---~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          647 YIPK---EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             CCCG---GGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             cCCH---HHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            5544   6677888888888877533355533   234444444332        3567778888888777 43344443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=280.39  Aligned_cols=396  Identities=17%  Similarity=0.144  Sum_probs=245.6

Q ss_pred             CCCeEEEecCCCCcccCCc--ccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPER--LQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~--~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l  176 (606)
                      +.+++|++++|.+..++..  ..+++|++|++++|.+..++...|.++++|++|++++|.++.+| ..|+++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            5688999999999777643  38899999999999888888777889999999999999998854 68899999999999


Q ss_pred             eCCCCCC-C-cccCCCCCCCEeeecCCcCCc--ccccccCCCCCCEEecCCCcccccccHHHhhCCCCC----CEEEccC
Q 007371          177 DYCRLKD-I-AIVGQLKKLEILILARSTIKQ--LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL----EELYMGN  248 (606)
Q Consensus       177 ~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L----~~L~l~~  248 (606)
                      ++|.++. + ..++++++|++|++++|.++.  +|..++++++|++|++++|...+..+.. ++.+++|    ++|++++
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG-GHHHHTCTTCCCEEECTT
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH-ccchhccchhhhhcccCC
Confidence            9999888 3 468999999999999998885  6888999999999999997655444444 7777777    7888888


Q ss_pred             CCCCCccccCCC--------------------------------------------------------------------
Q 007371          249 SFSGWEKVEGGS--------------------------------------------------------------------  260 (606)
Q Consensus       249 ~~~~~~~~~~~~--------------------------------------------------------------------  260 (606)
                      |.+....+..-.                                                                    
T Consensus       187 n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~  266 (570)
T 2z63_A          187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  266 (570)
T ss_dssp             CCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEE
T ss_pred             CCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhc
Confidence            776554331100                                                                    


Q ss_pred             -----ccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccc
Q 007371          261 -----NASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQ  335 (606)
Q Consensus       261 -----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~  335 (606)
                           +.....++.+++|++|++.++.+..+|..+...+|+.|++..+...  .++.  ..+++|+.|++.+|......+
T Consensus       267 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~--~l~~--~~l~~L~~L~l~~n~~~~~~~  342 (570)
T 2z63_A          267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG--QFPT--LKLKSLKRLTFTSNKGGNAFS  342 (570)
T ss_dssp             TTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCS--SCCB--CBCSSCCEEEEESCBSCCBCC
T ss_pred             chhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCccc--ccCc--ccccccCEEeCcCCccccccc
Confidence                 0011223444555555555555555555443335555555322221  1111  344555555555554433222


Q ss_pred             cchhHHHhhccccceecccccCcccc--cccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhh
Q 007371          336 ENDGTKMLLQRTEGLWLETLEGVQSV--VHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKC  413 (606)
Q Consensus       336 ~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~  413 (606)
                      .     ..+++|++|++++|......  +..+.   ++++|++|++++|. +..+...        ...+++|+.     
T Consensus       343 ~-----~~~~~L~~L~l~~n~l~~~~~~~~~~~---~~~~L~~L~l~~n~-l~~~~~~--------~~~l~~L~~-----  400 (570)
T 2z63_A          343 E-----VDLPSLEFLDLSRNGLSFKGCCSQSDF---GTTSLKYLDLSFNG-VITMSSN--------FLGLEQLEH-----  400 (570)
T ss_dssp             C-----CBCTTCCEEECCSSCCBEEEEEEHHHH---TCSCCCEEECCSCS-EEEEEEE--------EETCTTCCE-----
T ss_pred             c-----ccCCCCCEEeCcCCccCcccccccccc---ccCccCEEECCCCc-ccccccc--------ccccCCCCE-----
Confidence            1     12355666666555432211  22233   55566666665553 2222100        223344444     


Q ss_pred             hhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCc-ceee
Q 007371          414 YEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSL-EEVL  492 (606)
Q Consensus       414 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l-~~l~  492 (606)
                                  |.+.++.-....+.   ..+..+++|++|++++| .+....+ ..+..+++|++|++++|.-. ..+ 
T Consensus       401 ------------L~l~~n~l~~~~~~---~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~-  462 (570)
T 2z63_A          401 ------------LDFQHSNLKQMSEF---SVFLSLRNLIYLDISHT-HTRVAFN-GIFNGLSSLEVLKMAGNSFQENFL-  462 (570)
T ss_dssp             ------------EECTTSEEESCTTS---CTTTTCTTCCEEECTTS-CCEECCT-TTTTTCTTCCEEECTTCEEGGGEE-
T ss_pred             ------------EEccCCccccccch---hhhhcCCCCCEEeCcCC-cccccch-hhhhcCCcCcEEECcCCcCccccc-
Confidence                        77776542221111   12356677777777775 4555433 33466777777777776522 122 


Q ss_pred             ccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371          493 HLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI  554 (606)
Q Consensus       493 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~  554 (606)
                                +..+..+++|++|++++| +++.+..  .....+++|++|++++| +++.++
T Consensus       463 ----------p~~~~~l~~L~~L~l~~n-~l~~~~~--~~~~~l~~L~~L~l~~n-~l~~~~  510 (570)
T 2z63_A          463 ----------PDIFTELRNLTFLDLSQC-QLEQLSP--TAFNSLSSLQVLNMASN-QLKSVP  510 (570)
T ss_dssp             ----------CSCCTTCTTCCEEECTTS-CCCEECT--TTTTTCTTCCEEECCSS-CCSCCC
T ss_pred             ----------hhhhhcccCCCEEECCCC-ccccCCh--hhhhcccCCCEEeCCCC-cCCCCC
Confidence                      224456777777777777 4554422  24556777777777777 466554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=3.5e-30  Score=281.16  Aligned_cols=411  Identities=16%  Similarity=0.095  Sum_probs=276.9

Q ss_pred             CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCC
Q 007371          102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~  180 (606)
                      -+.++.++..+..+|.... +++++|++++|.+..++...|.++++|++|++++|.+.. .|..|+++++|++|++++|.
T Consensus        14 ~~~~~c~~~~l~~iP~~l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~   92 (606)
T 3t6q_A           14 NKTYNCENLGLNEIPGTLP-NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP   92 (606)
T ss_dssp             TTEEECTTSCCSSCCTTSC-TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             CceEECCCCCcccCcCCCC-CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence            3467788888888887552 379999999999999977778999999999999999988 57889999999999999999


Q ss_pred             CCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371          181 LKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKV  256 (606)
Q Consensus       181 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~  256 (606)
                      +..  |..++++++|++|++++|.++.+ |..++++++|++|++++|...+ ..|.  +..+++|++|++++|.+....+
T Consensus        93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~  170 (606)
T 3t6q_A           93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLSK  170 (606)
T ss_dssp             CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSSCCCEECH
T ss_pred             ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccCcccccCh
Confidence            888  68899999999999999999987 6789999999999999987655 2344  5569999999999998877654


Q ss_pred             cCCCccchHhhccCCCCC--EEEEeeCCCCCCCccc-cccCCcEEEEE--------------------------------
Q 007371          257 EGGSNASLVELERLTKLA--TLEIEVADAEILPPNF-VSVELQRYRIR--------------------------------  301 (606)
Q Consensus       257 ~~~~~~~~~~l~~l~~L~--~L~l~~~~~~~~~~~~-~~~~L~~L~l~--------------------------------  301 (606)
                              ..++.+++|+  +|++.+|.+..++... ....|+.|++.                                
T Consensus       171 --------~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~  242 (606)
T 3t6q_A          171 --------EDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDED  242 (606)
T ss_dssp             --------HHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCC
T ss_pred             --------hhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccc
Confidence                    7789999999  8888888876655432 22333333331                                


Q ss_pred             -------------------eCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCccccc
Q 007371          302 -------------------IGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVV  362 (606)
Q Consensus       302 -------------------~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  362 (606)
                                         .++......+..+..+++|+.|++++|.+. .+  |.++.. +++|++|++.+|......+
T Consensus       243 i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~l--p~~l~~-l~~L~~L~l~~n~l~~~~~  318 (606)
T 3t6q_A          243 ISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-EL--PSGLVG-LSTLKKLVLSANKFENLCQ  318 (606)
T ss_dssp             CCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CC--CSSCCS-CTTCCEEECTTCCCSBGGG
T ss_pred             cChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CC--Chhhcc-cccCCEEECccCCcCcCch
Confidence                               111122222333666777777777777653 22  223322 4677777777765554444


Q ss_pred             ccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh--------hhhhhccccccceecccccc
Q 007371          363 HELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC--------YEEMIGFRDIIHLQLSHFPR  433 (606)
Q Consensus       363 ~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~--------~~~~~~~~~L~~L~l~~~~~  433 (606)
                      ..+.   .+++|++|++++|.....+...       ....+++|+. .+..+        +..+..+++|+.|.+.++.-
T Consensus       319 ~~~~---~l~~L~~L~l~~n~~~~~~~~~-------~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  388 (606)
T 3t6q_A          319 ISAS---NFPSLTHLSIKGNTKRLELGTG-------CLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP  388 (606)
T ss_dssp             GCGG---GCTTCSEEECCSCSSCCBCCSS-------TTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSC
T ss_pred             hhhh---ccCcCCEEECCCCCcccccchh-------hhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcC
Confidence            4444   6777778877777533222100       0234555555 12211        33455566667777666532


Q ss_pred             ccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccc
Q 007371          434 LKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLF  513 (606)
Q Consensus       434 l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~  513 (606)
                       ..+..   ..+..+++|++|++++| .++...+...+.++++|++|++++|. +...+          +..+..+++|+
T Consensus       389 -~~~~~---~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----------~~~~~~l~~L~  452 (606)
T 3t6q_A          389 -LSLKT---EAFKECPQLELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISS----------EQLFDGLPALQ  452 (606)
T ss_dssp             -EEECT---TTTTTCTTCSEEECTTC-CEECCTTCCTTTTCTTCCEEECTTCC-CBTTC----------TTTTTTCTTCC
T ss_pred             -CcCCH---HHhcCCccCCeEECCCC-cCCCcccchhhhCcccCCEEECCCCc-cCCcC----------HHHHhCCCCCC
Confidence             22211   12355677777777774 44444343435667777777777765 32221          23455688888


Q ss_pred             eEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371          514 KLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI  554 (606)
Q Consensus       514 ~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~  554 (606)
                      +|++++|+--............+++|+.|++++| +++.++
T Consensus       453 ~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~  492 (606)
T 3t6q_A          453 HLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC-DLSSID  492 (606)
T ss_dssp             EEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS-CCCEEC
T ss_pred             EEECCCCCCCccccccchhhccCCCccEEECCCC-ccCccC
Confidence            8888888432211111234667888999999888 455553

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.97  E-value=5.9e-30  Score=276.03  Aligned_cols=425  Identities=16%  Similarity=0.210  Sum_probs=254.5

Q ss_pred             CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCcc-ccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSS-LGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l  176 (606)
                      +.+++|++++|.+..++. .. .+++|++|++++|.+..++...|.++++|++|++++|.++.+|.. ++++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            568888888888866643 33 788888888888888777766678888888888888888886554 888888888888


Q ss_pred             eCCCCCC---CcccCCCCCCCEeeecCCc-CCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCC
Q 007371          177 DYCRLKD---IAIVGQLKKLEILILARST-IKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFS  251 (606)
Q Consensus       177 ~~~~~~~---~~~i~~l~~L~~L~l~~~~-l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~  251 (606)
                      ++|.++.   |..++++++|++|++++|. +..+| ..++++++|++|++++|...+..|.. ++.+++|++|+++++..
T Consensus       106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBS
T ss_pred             CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhh-hhccccCceEecccCcc
Confidence            8888764   4678888888888888886 56666 46788888888888887776667766 78888888888888776


Q ss_pred             CCccccCCCccchHhhccCCCCCEEEEeeCCCCCCC---ccc--cccCCcEEEEEeCCCCCC---CCC------------
Q 007371          252 GWEKVEGGSNASLVELERLTKLATLEIEVADAEILP---PNF--VSVELQRYRIRIGDESED---EFD------------  311 (606)
Q Consensus       252 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~--~~~~L~~L~l~~~~~~~~---~~~------------  311 (606)
                      ...+.        ..++.+++|++|++++|.+..++   ..+  ..++|+.|++........   .+.            
T Consensus       185 ~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l  256 (549)
T 2z81_A          185 AFLLE--------IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEV  256 (549)
T ss_dssp             TTHHH--------HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEE
T ss_pred             cccch--------hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccc
Confidence            54432        33466888999999988876542   222  237788888743211000   000            


Q ss_pred             ------------------CcccCCCCCcEEEecCcccccccc--cchhHHHhhccccceecccccCcccccccccCCCCC
Q 007371          312 ------------------PLLVKSEAPRLMMLKGLEKVSILQ--ENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGF  371 (606)
Q Consensus       312 ------------------~~l~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l  371 (606)
                                        ..+..+.+++.+.+.++.......  ....+...+++|+.|++.+|. ++.+|..+  .+.+
T Consensus       257 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~--~~~l  333 (549)
T 2z81_A          257 EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSF--SQHL  333 (549)
T ss_dssp             EEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHH--HHHC
T ss_pred             ccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHH--HhcC
Confidence                              111222333333333322111000  000011222445555555433 23344322  0134


Q ss_pred             CCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh--------hhhhhccccccceeccccccccccccCCC
Q 007371          372 PRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC--------YEEMIGFRDIIHLQLSHFPRLKEIWHGQA  442 (606)
Q Consensus       372 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~--------~~~~~~~~~L~~L~l~~~~~l~~~~~~~~  442 (606)
                      ++|++|++++|.-...+....     ...+.+++|+. .+..+        +..+..+++|+.|+++++ .++.++..  
T Consensus       334 ~~L~~L~Ls~N~l~~~~~~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~--  405 (549)
T 2z81_A          334 KSLEFLDLSENLMVEEYLKNS-----ACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN-TFHPMPDS--  405 (549)
T ss_dssp             TTCCEEECCSSCCCHHHHHHH-----TCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTC-CCCCCCSC--
T ss_pred             ccccEEEccCCccccccccch-----hhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCC-CCccCChh--
Confidence            555555555554221110000     00123344444 11111        122344455555888776 45555432  


Q ss_pred             CCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccc
Q 007371          443 LPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPK  522 (606)
Q Consensus       443 ~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  522 (606)
                        ...+++|++|++++| +++.+ +..   -.++|++|++++|. ++.++              ..+++|++|++++| +
T Consensus       406 --~~~~~~L~~L~Ls~N-~l~~l-~~~---~~~~L~~L~Ls~N~-l~~~~--------------~~l~~L~~L~Ls~N-~  462 (549)
T 2z81_A          406 --CQWPEKMRFLNLSST-GIRVV-KTC---IPQTLEVLDVSNNN-LDSFS--------------LFLPRLQELYISRN-K  462 (549)
T ss_dssp             --CCCCTTCCEEECTTS-CCSCC-CTT---SCTTCSEEECCSSC-CSCCC--------------CCCTTCCEEECCSS-C
T ss_pred             --hcccccccEEECCCC-Ccccc-cch---hcCCceEEECCCCC-hhhhc--------------ccCChhcEEECCCC-c
Confidence              356678888888885 46665 321   13578888887764 44432              25788888888887 6


Q ss_pred             cccccccccccccCCCcceEeeccCCCCcccccCCccccccccChhhhhhhccccceeeccc
Q 007371          523 LKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVADQ  584 (606)
Q Consensus       523 L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~~~~~~~l~~~~~~~~~l~~l~~l~i~~~  584 (606)
                      ++.+|.    ...+++|+.|+++++ +++.++..            .+..+++|+.|.++++
T Consensus       463 l~~ip~----~~~l~~L~~L~Ls~N-~l~~~~~~------------~~~~l~~L~~L~l~~N  507 (549)
T 2z81_A          463 LKTLPD----ASLFPVLLVMKISRN-QLKSVPDG------------IFDRLTSLQKIWLHTN  507 (549)
T ss_dssp             CSSCCC----GGGCTTCCEEECCSS-CCCCCCTT------------GGGGCTTCCEEECCSS
T ss_pred             cCcCCC----cccCccCCEEecCCC-ccCCcCHH------------HHhcCcccCEEEecCC
Confidence            777765    345788888888887 56666532            2345666666666443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.97  E-value=8.4e-29  Score=273.96  Aligned_cols=155  Identities=21%  Similarity=0.153  Sum_probs=111.5

Q ss_pred             CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l  176 (606)
                      +.+++|++++|.+..++.. . .+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .|+++++|++|++
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L  104 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHL  104 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEEC
Confidence            4577888888887666653 2 77788888888777777766666778888888888888877665 4778888888888


Q ss_pred             eCCCCCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhh--CCCCCCEEEccCCCC
Q 007371          177 DYCRLKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVIS--KLSQLEELYMGNSFS  251 (606)
Q Consensus       177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~--~l~~L~~L~l~~~~~  251 (606)
                      ++|.+..  +..++++++|++|++++|.++.. |..++++++|++|++++|...+..+.. ++  .+++|++|++++|.+
T Consensus       105 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          105 MSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEE-LDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHH-HGGGTTCEESEEECTTCCC
T ss_pred             CCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHH-hhccccccccEEECCCCcc
Confidence            8887776  35677888888888888877754 445677888888888876644433332 33  457788888877766


Q ss_pred             CCcc
Q 007371          252 GWEK  255 (606)
Q Consensus       252 ~~~~  255 (606)
                      ....
T Consensus       184 ~~~~  187 (680)
T 1ziw_A          184 KEFS  187 (680)
T ss_dssp             CCBC
T ss_pred             cccC
Confidence            5544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.3e-29  Score=276.84  Aligned_cols=355  Identities=15%  Similarity=0.125  Sum_probs=262.0

Q ss_pred             cchhHhcCCCCCcEEEeeCCcCcc------------------CCcccc--CCCCCcEEEeeCCCCCC--CcccCCCCCCC
Q 007371          137 VSDHFFKGTEGLKVLNFTRIHFSS------------------LPSSLG--CLINLQTLCLDYCRLKD--IAIVGQLKKLE  194 (606)
Q Consensus       137 ~~~~~~~~l~~L~~L~l~~~~l~~------------------lp~~~~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~  194 (606)
                      +|.. +.++++|++|++++|.++.                  +|..++  ++++|++|++++|.+.+  |..++++++|+
T Consensus       198 ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  276 (636)
T 4eco_A          198 VSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQ  276 (636)
T ss_dssp             ECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCC
T ss_pred             CCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCC
Confidence            6665 4889999999999999998                  999999  99999999999999777  78999999999


Q ss_pred             EeeecCCc-CCc--ccccccCC------CCCCEEecCCCcccccccH--HHhhCCCCCCEEEccCCCCCCccccCCCccc
Q 007371          195 ILILARST-IKQ--LPLEIGQL------TRLQLLDLSNCWLLEVIAP--NVISKLSQLEELYMGNSFSGWEKVEGGSNAS  263 (606)
Q Consensus       195 ~L~l~~~~-l~~--lp~~i~~L------~~L~~L~l~~~~~~~~~p~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~  263 (606)
                      +|++++|+ ++.  +|..++++      ++|++|++++|... .+|.  . ++++++|++|++++|.+.+..        
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~-l~~l~~L~~L~L~~N~l~g~i--------  346 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETS-LQKMKKLGMLECLYNQLEGKL--------  346 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHH-HTTCTTCCEEECCSCCCEEEC--------
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhh-hccCCCCCEEeCcCCcCccch--------
Confidence            99999998 884  89888887      99999999998766 8887  6 899999999999999876333        


Q ss_pred             hHhhccCCCCCEEEEeeCCCCCCCccccc-cC-CcEEEEEeCCCCCCCCCCcccCCC--CCcEEEecCcccccccccchh
Q 007371          264 LVELERLTKLATLEIEVADAEILPPNFVS-VE-LQRYRIRIGDESEDEFDPLLVKSE--APRLMMLKGLEKVSILQENDG  339 (606)
Q Consensus       264 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~L~~~~~~~~~~~~~~  339 (606)
                       ..++.+++|++|++++|.+..+|..+.. ++ |+.|++.... .. .++..+....  +|+.|++++|.+.+..+.  +
T Consensus       347 -p~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~--~  421 (636)
T 4eco_A          347 -PAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGK--N  421 (636)
T ss_dssp             -CCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTC--S
T ss_pred             -hhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-Cc-ccchhhhhcccCccCEEECcCCcCCCcchh--h
Confidence             2577888999999999998888887755 67 9999984433 33 5566666554  899999999888664432  1


Q ss_pred             HH------HhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccc--cccccccccchhhh
Q 007371          340 TK------MLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEG--ELRRWEGNLNSTIQ  411 (606)
Q Consensus       340 ~~------~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~--~~~~~~~~L~~~i~  411 (606)
                      +.      -.+++|+.|++++|... .+|..+  ...+++|++|++++|. ++.+...  .+..  .....+++|+.   
T Consensus       422 l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~--~~~l~~L~~L~Ls~N~-l~~i~~~--~~~~~~~~~~~l~~L~~---  492 (636)
T 4eco_A          422 FDPLDPTPFKGINVSSINLSNNQIS-KFPKEL--FSTGSPLSSINLMGNM-LTEIPKN--SLKDENENFKNTYLLTS---  492 (636)
T ss_dssp             SCTTCSSCCCCCCEEEEECCSSCCC-SCCTHH--HHTTCCCSEEECCSSC-CSBCCSS--SSEETTEECTTGGGCCE---
T ss_pred             hcccccccccCCCCCEEECcCCccC-cCCHHH--HccCCCCCEEECCCCC-CCCcCHH--HhccccccccccCCccE---
Confidence            11      01358999999997654 566543  2258999999999986 3333111  0000  00001115555   


Q ss_pred             hhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCC----
Q 007371          412 KCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDS----  487 (606)
Q Consensus       412 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~----  487 (606)
                                    |++.++. +..++...  ....+++|+.|+++++ +++.+ |.. +.++++|++|+++++..    
T Consensus       493 --------------L~Ls~N~-l~~lp~~~--~~~~l~~L~~L~Ls~N-~l~~i-p~~-~~~l~~L~~L~Ls~N~~ls~N  552 (636)
T 4eco_A          493 --------------IDLRFNK-LTKLSDDF--RATTLPYLVGIDLSYN-SFSKF-PTQ-PLNSSTLKGFGIRNQRDAQGN  552 (636)
T ss_dssp             --------------EECCSSC-CCBCCGGG--STTTCTTCCEEECCSS-CCSSC-CCG-GGGCSSCCEEECCSCBCTTCC
T ss_pred             --------------EECcCCc-CCccChhh--hhccCCCcCEEECCCC-CCCCc-Chh-hhcCCCCCEEECCCCcccccC
Confidence                          9998864 44555332  0127899999999995 67776 544 46899999999976441    


Q ss_pred             --cceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371          488 --LEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI  554 (606)
Q Consensus       488 --l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~  554 (606)
                        ...+           +..+..+++|++|++++| +++.+|.   ..  .++|+.|++++|| +.++.
T Consensus       553 ~l~~~~-----------p~~l~~l~~L~~L~Ls~N-~l~~ip~---~~--~~~L~~L~Ls~N~-l~~~~  603 (636)
T 4eco_A          553 RTLREW-----------PEGITLCPSLTQLQIGSN-DIRKVNE---KI--TPNISVLDIKDNP-NISID  603 (636)
T ss_dssp             BCCCCC-----------CTTGGGCSSCCEEECCSS-CCCBCCS---CC--CTTCCEEECCSCT-TCEEE
T ss_pred             cccccC-----------hHHHhcCCCCCEEECCCC-cCCccCH---hH--hCcCCEEECcCCC-Ccccc
Confidence              2222           335567999999999998 4588876   32  3899999999996 44443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=2.5e-29  Score=279.20  Aligned_cols=398  Identities=15%  Similarity=0.105  Sum_probs=293.6

Q ss_pred             CCCeEEEecCCCC-cccCCcc-cccccceeec-cccc-------------------------------------------
Q 007371          100 KDPIAISLTYGGI-QVLPERL-QCPCLELLHT-EGDG-------------------------------------------  133 (606)
Q Consensus       100 ~~l~~L~l~~~~~-~~l~~~~-~l~~L~~L~~-~~~~-------------------------------------------  133 (606)
                      .++..|+++++.+ +.+|..+ ++++|++|++ ++|.                                           
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            6789999999999 6788776 8999999998 5542                                           


Q ss_pred             ----------------------------------ccccchhHhcCCCCCcEEEeeCCcCcc------------------C
Q 007371          134 ----------------------------------SMQVSDHFFKGTEGLKVLNFTRIHFSS------------------L  161 (606)
Q Consensus       134 ----------------------------------~~~~~~~~~~~l~~L~~L~l~~~~l~~------------------l  161 (606)
                                                        +..+|.. +.++++|++|++++|.++.                  +
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                                              1116666 4889999999999999998                  9


Q ss_pred             Ccccc--CCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCc-CCc--ccccccCCC-------CCCEEecCCCccc
Q 007371          162 PSSLG--CLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARST-IKQ--LPLEIGQLT-------RLQLLDLSNCWLL  227 (606)
Q Consensus       162 p~~~~--~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~-l~~--lp~~i~~L~-------~L~~L~l~~~~~~  227 (606)
                      |..++  ++++|++|++++|.+.+  |..++++++|++|++++|+ ++.  +|..+++++       +|++|++++|...
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            99988  99999999999999776  8899999999999999997 884  888776665       9999999998766


Q ss_pred             ccccH--HHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccc-cC-CcEEEEEeC
Q 007371          228 EVIAP--NVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVS-VE-LQRYRIRIG  303 (606)
Q Consensus       228 ~~~p~--~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~-L~~L~l~~~  303 (606)
                       .+|.  . ++++++|++|++++|.+...          ..++.+++|+.|++++|.+..+|..+.. ++ |+.|++..+
T Consensus       562 -~ip~~~~-l~~L~~L~~L~Ls~N~l~~l----------p~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          562 -EFPASAS-LQKMVKLGLLDCVHNKVRHL----------EAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             -BCCCHHH-HTTCTTCCEEECTTSCCCBC----------CCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred             -ccCChhh-hhcCCCCCEEECCCCCcccc----------hhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence             8887  6 99999999999999987622          2578899999999999999999987755 67 999999544


Q ss_pred             CCCCCCCCCcccCCCC--CcEEEecCccccccccc-chhHHH-hhccccceecccccCcccccccccCCCCCCCCcEEEe
Q 007371          304 DESEDEFDPLLVKSEA--PRLMMLKGLEKVSILQE-NDGTKM-LLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHV  379 (606)
Q Consensus       304 ~~~~~~~~~~l~~~~~--L~~L~L~~~~~~~~~~~-~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l  379 (606)
                      . .. .++..+.....  |+.|++++|.+.+.++. +..+.. ..++|+.|++++|... .+|..+  ...+++|++|++
T Consensus       630 ~-L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~--~~~l~~L~~L~L  704 (876)
T 4ecn_A          630 K-LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTEL--FATGSPISTIIL  704 (876)
T ss_dssp             C-CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHH--HHTTCCCSEEEC
T ss_pred             C-CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHH--HccCCCCCEEEC
Confidence            4 33 55666666554  99999999988765432 111111 1258999999998655 566543  236899999999


Q ss_pred             ecCCCceEeccccccccc--cccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEec
Q 007371          380 KSCSEILHIVGSVRREEG--ELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVD  457 (606)
Q Consensus       380 ~~c~~l~~~~~~~~~~~~--~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~  457 (606)
                      ++|. +..+...  .+..  .....+++|+.                 |++.++ ++..++...  ....+++|+.|+++
T Consensus       705 s~N~-L~~ip~~--~~~~~~~~l~nl~~L~~-----------------L~Ls~N-~L~~lp~~l--~~~~l~~L~~L~Ls  761 (876)
T 4ecn_A          705 SNNL-MTSIPEN--SLKPKDGNYKNTYLLTT-----------------IDLRFN-KLTSLSDDF--RATTLPYLSNMDVS  761 (876)
T ss_dssp             CSCC-CSCCCTT--SSSCTTSCCTTGGGCCE-----------------EECCSS-CCCCCCGGG--STTTCTTCCEEECC
T ss_pred             CCCc-CCccChH--HhccccccccccCCccE-----------------EECCCC-CCccchHHh--hhccCCCcCEEEeC
Confidence            9984 4443211  0000  00001224555                 999987 555555332  11278999999999


Q ss_pred             cCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCC
Q 007371          458 DCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELP  537 (606)
Q Consensus       458 ~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~  537 (606)
                      ++ +++.+ |.. +.++++|+.|++++++.+..-...     ...+..+..+++|++|++++| .+..+|.   .  ..+
T Consensus       762 ~N-~L~~l-p~~-l~~L~~L~~L~Ls~N~~ls~N~l~-----~~ip~~l~~L~~L~~L~Ls~N-~L~~Ip~---~--l~~  827 (876)
T 4ecn_A          762 YN-CFSSF-PTQ-PLNSSQLKAFGIRHQRDAEGNRIL-----RQWPTGITTCPSLIQLQIGSN-DIRKVDE---K--LTP  827 (876)
T ss_dssp             SS-CCSSC-CCG-GGGCTTCCEEECCCCBCTTCCBCC-----CCCCTTGGGCSSCCEEECCSS-CCCBCCS---C--CCS
T ss_pred             CC-CCCcc-chh-hhcCCCCCEEECCCCCCccccccc-----ccChHHHhcCCCCCEEECCCC-CCCccCH---h--hcC
Confidence            95 67776 544 468999999999875421110000     011345667999999999998 4588876   3  237


Q ss_pred             CcceEeeccCCCCccc
Q 007371          538 KLRYLTIENCPDMETF  553 (606)
Q Consensus       538 ~L~~L~i~~Cp~L~~l  553 (606)
                      +|+.|++++|+ +.++
T Consensus       828 ~L~~LdLs~N~-l~~i  842 (876)
T 4ecn_A          828 QLYILDIADNP-NISI  842 (876)
T ss_dssp             SSCEEECCSCT-TCEE
T ss_pred             CCCEEECCCCC-CCcc
Confidence            99999999997 4444

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.97  E-value=3.2e-29  Score=271.67  Aligned_cols=430  Identities=16%  Similarity=0.161  Sum_probs=302.3

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~  181 (606)
                      +.++-++.++..+|... .+++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus        10 ~~~~c~~~~l~~ip~~l-~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l   88 (570)
T 2z63_A           10 ITYQCMELNFYKIPDNL-PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI   88 (570)
T ss_dssp             TEEECCSSCCSSCCSSS-CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             cEEEeCCCCccccCCCc-cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence            45666666777888744 35799999999999988877789999999999999999985 56789999999999999999


Q ss_pred             CC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371          182 KD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKVE  257 (606)
Q Consensus       182 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~  257 (606)
                      +.  +..++++++|++|++++|.++.+|. .++++++|++|++++|.... .+|.. ++++++|++|++++|.+....+ 
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~-~~~l~~L~~L~l~~n~l~~~~~-  166 (570)
T 2z63_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC-  166 (570)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECTTSCCCEECG-
T ss_pred             CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhh-hcccCCCCEEeCcCCccceecH-
Confidence            88  4789999999999999999998876 68999999999999987655 46877 9999999999999998876654 


Q ss_pred             CCCccchHhhccCCCC----CEEEEeeCCCCCCCcccc-ccCCcEEEEEeCC----------------------------
Q 007371          258 GGSNASLVELERLTKL----ATLEIEVADAEILPPNFV-SVELQRYRIRIGD----------------------------  304 (606)
Q Consensus       258 ~~~~~~~~~l~~l~~L----~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~----------------------------  304 (606)
                             ..++.+++|    ++|++++|.+..++.... ..+|+.|++....                            
T Consensus       167 -------~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~  239 (570)
T 2z63_A          167 -------TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN  239 (570)
T ss_dssp             -------GGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC
T ss_pred             -------HHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccC
Confidence                   455666666    788888888766554332 2456666553210                            


Q ss_pred             -----------------------------CCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccc
Q 007371          305 -----------------------------ESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETL  355 (606)
Q Consensus       305 -----------------------------~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~  355 (606)
                                                   ......+..+..+++|+.|++++|.+..   .|.++.. + +|++|++.+|
T Consensus       240 ~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~---l~~~~~~-~-~L~~L~l~~n  314 (570)
T 2z63_A          240 EGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER---VKDFSYN-F-GWQHLELVNC  314 (570)
T ss_dssp             CSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS---CCBCCSC-C-CCSEEEEESC
T ss_pred             chhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh---hhhhhcc-C-CccEEeeccC
Confidence                                         1112223445566777788887766532   2223332 2 6777777776


Q ss_pred             cCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhh--------hhhhhccccccce
Q 007371          356 EGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKC--------YEEMIGFRDIIHL  426 (606)
Q Consensus       356 ~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~--------~~~~~~~~~L~~L  426 (606)
                      ... .+|.     ..+++|++|++.++......        +  ...+++|+. .+..+        +..+..+++|+.|
T Consensus       315 ~~~-~l~~-----~~l~~L~~L~l~~n~~~~~~--------~--~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L  378 (570)
T 2z63_A          315 KFG-QFPT-----LKLKSLKRLTFTSNKGGNAF--------S--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL  378 (570)
T ss_dssp             BCS-SCCB-----CBCSSCCEEEEESCBSCCBC--------C--CCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEE
T ss_pred             ccc-ccCc-----ccccccCEEeCcCCcccccc--------c--cccCCCCCEEeCcCCccCccccccccccccCccCEE
Confidence            543 3333     25677777777776533221        1  245666666 23222        3455667778888


Q ss_pred             eccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCC
Q 007371          427 QLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIG  506 (606)
Q Consensus       427 ~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~  506 (606)
                      ++.++. +..++.    .+..+++|++|++.+| .+....+...+.++++|++|++++|. +....          +..+
T Consensus       379 ~l~~n~-l~~~~~----~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~----------~~~~  441 (570)
T 2z63_A          379 DLSFNG-VITMSS----NFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH-TRVAF----------NGIF  441 (570)
T ss_dssp             ECCSCS-EEEEEE----EEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTTSC-CEECC----------TTTT
T ss_pred             ECCCCc-cccccc----cccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcCCc-ccccc----------hhhh
Confidence            888874 333332    2467889999999985 56665454456789999999999986 33322          2345


Q ss_pred             CCCCccceEeecccccc-ccccccccccccCCCcceEeeccCCCCccccc----CCccccccccChh--------hhhhh
Q 007371          507 PLFPKLFKLRLTDLPKL-KRFCNFTRNIIELPKLRYLTIENCPDMETFIS----NSTSVLHMTADNK--------EAQKL  573 (606)
Q Consensus       507 ~~~~~L~~L~l~~c~~L-~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~----~~~~~~~l~~~~~--------~~~~l  573 (606)
                      ..+++|++|++.+|.-. ..+|.   ....+++|+.|++++|. ++.+++    ..+.++.+++..+        .+..+
T Consensus       442 ~~l~~L~~L~l~~n~l~~~~~p~---~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  517 (570)
T 2z63_A          442 NGLSSLEVLKMAGNSFQENFLPD---IFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL  517 (570)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECS---CCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             hcCCcCcEEECcCCcCccccchh---hhhcccCCCEEECCCCc-cccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence            67999999999999533 24544   67789999999999984 555532    1234555544333        24566


Q ss_pred             ccccceeeccc
Q 007371          574 KSEKNLLVADQ  584 (606)
Q Consensus       574 ~~l~~l~i~~~  584 (606)
                      ++|+.|.++++
T Consensus       518 ~~L~~L~l~~N  528 (570)
T 2z63_A          518 TSLQKIWLHTN  528 (570)
T ss_dssp             TTCCEEECCSS
T ss_pred             cCCcEEEecCC
Confidence            77777777764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=1.2e-29  Score=276.90  Aligned_cols=379  Identities=12%  Similarity=0.083  Sum_probs=290.5

Q ss_pred             CCCCcccCCcc-cccccceeecccccccc------------------cchhHhc--CCCCCcEEEeeCCcCcc-CCcccc
Q 007371          109 YGGIQVLPERL-QCPCLELLHTEGDGSMQ------------------VSDHFFK--GTEGLKVLNFTRIHFSS-LPSSLG  166 (606)
Q Consensus       109 ~~~~~~l~~~~-~l~~L~~L~~~~~~~~~------------------~~~~~~~--~l~~L~~L~l~~~~l~~-lp~~~~  166 (606)
                      .|.+..+|..+ ++++|++|++++|.+..                  +|..+ .  ++++|++|++++|.+.. +|..++
T Consensus       192 ~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~p~~l~  270 (636)
T 4eco_A          192 SNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKLPTFLK  270 (636)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSCCTTTT
T ss_pred             cCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccChHHHh
Confidence            34565588766 89999999999998877                  88876 6  89999999999999876 999999


Q ss_pred             CCCCCcEEEeeCCC-CCC---CcccCCC------CCCCEeeecCCcCCcccc--cccCCCCCCEEecCCCcccccccHHH
Q 007371          167 CLINLQTLCLDYCR-LKD---IAIVGQL------KKLEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNV  234 (606)
Q Consensus       167 ~l~~L~~L~l~~~~-~~~---~~~i~~l------~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~  234 (606)
                      ++++|++|++++|. +++   |..++++      ++|++|++++|.++.+|.  .++++++|++|++++|...+.+| . 
T Consensus       271 ~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~-  348 (636)
T 4eco_A          271 ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-A-  348 (636)
T ss_dssp             TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-C-
T ss_pred             cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-h-
Confidence            99999999999998 874   6777776      999999999999999999  99999999999999998887999 5 


Q ss_pred             hhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCC-CCEEEEeeCCCCCCCccccc---cCCcEEEEEeCCCCCCCC
Q 007371          235 ISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTK-LATLEIEVADAEILPPNFVS---VELQRYRIRIGDESEDEF  310 (606)
Q Consensus       235 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~  310 (606)
                      ++.+++|++|++++|.+...+         ..++.+++ |++|++++|.+..+|..+..   ++|+.|++. .+......
T Consensus       349 ~~~l~~L~~L~L~~N~l~~lp---------~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls-~N~l~~~~  418 (636)
T 4eco_A          349 FGSEIKLASLNLAYNQITEIP---------ANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFS-YNEIGSVD  418 (636)
T ss_dssp             CEEEEEESEEECCSSEEEECC---------TTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECC-SSCTTTTT
T ss_pred             hCCCCCCCEEECCCCcccccc---------HhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECc-CCcCCCcc
Confidence            999999999999999887443         66899999 99999999999999987654   379999884 34444444


Q ss_pred             CCccc-------CCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccC-----CCCCCCCcEEE
Q 007371          311 DPLLV-------KSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD-----GEGFPRLKHLH  378 (606)
Q Consensus       311 ~~~l~-------~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-----~~~l~~L~~L~  378 (606)
                      +..+.       .+.+|+.|++++|.+.   ..|..+...+++|++|++++|... .+|.....     ..++++|++|+
T Consensus       419 p~~l~~~~~~~~~~~~L~~L~Ls~N~l~---~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~  494 (636)
T 4eco_A          419 GKNFDPLDPTPFKGINVSSINLSNNQIS---KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSID  494 (636)
T ss_dssp             TCSSCTTCSSCCCCCCEEEEECCSSCCC---SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEE
T ss_pred             hhhhcccccccccCCCCCEEECcCCccC---cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEE
Confidence            45555       6779999999999875   345556666799999999998655 66654420     11234999999


Q ss_pred             eecCCCceEecccccccccccc--ccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEe
Q 007371          379 VKSCSEILHIVGSVRREEGELR--RWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVV  456 (606)
Q Consensus       379 l~~c~~l~~~~~~~~~~~~~~~--~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i  456 (606)
                      +++|. ++.+...        .  ..+++|+.                 |++.++. +..++..    +..+++|+.|++
T Consensus       495 Ls~N~-l~~lp~~--------~~~~~l~~L~~-----------------L~Ls~N~-l~~ip~~----~~~l~~L~~L~L  543 (636)
T 4eco_A          495 LRFNK-LTKLSDD--------FRATTLPYLVG-----------------IDLSYNS-FSKFPTQ----PLNSSTLKGFGI  543 (636)
T ss_dssp             CCSSC-CCBCCGG--------GSTTTCTTCCE-----------------EECCSSC-CSSCCCG----GGGCSSCCEEEC
T ss_pred             CcCCc-CCccChh--------hhhccCCCcCE-----------------EECCCCC-CCCcChh----hhcCCCCCEEEC
Confidence            99985 4443110        2  25677777                 9999864 4445533    478999999999


Q ss_pred             ccC-----CCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccc---
Q 007371          457 DDC-----TNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCN---  528 (606)
Q Consensus       457 ~~C-----~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~---  528 (606)
                      +++     +++....|.. +.++++|++|++++|. ++.++..             .+++|+.|++++|+- ..+..   
T Consensus       544 s~N~~ls~N~l~~~~p~~-l~~l~~L~~L~Ls~N~-l~~ip~~-------------~~~~L~~L~Ls~N~l-~~~~~~~~  607 (636)
T 4eco_A          544 RNQRDAQGNRTLREWPEG-ITLCPSLTQLQIGSND-IRKVNEK-------------ITPNISVLDIKDNPN-ISIDLSYV  607 (636)
T ss_dssp             CSCBCTTCCBCCCCCCTT-GGGCSSCCEEECCSSC-CCBCCSC-------------CCTTCCEEECCSCTT-CEEECTTT
T ss_pred             CCCcccccCcccccChHH-HhcCCCCCEEECCCCc-CCccCHh-------------HhCcCCEEECcCCCC-ccccHHhc
Confidence            653     3344444544 4789999999999987 5776541             348999999999953 33321   


Q ss_pred             ---cccccccCCCcceEeeccCCCCc
Q 007371          529 ---FTRNIIELPKLRYLTIENCPDME  551 (606)
Q Consensus       529 ---~~~~~~~~~~L~~L~i~~Cp~L~  551 (606)
                         .......+...+..+|++||.|+
T Consensus       608 ~~~~~~~~~~l~~~~~~~i~~C~~L~  633 (636)
T 4eco_A          608 CPYIEAGMYMLFYDKTQDIRGCDALD  633 (636)
T ss_dssp             HHHHHTTCCEEECCTTSEEESCGGGC
T ss_pred             chhhhcccceeecCCccccCCCcccc
Confidence               00122233444666889999875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.96  E-value=8e-28  Score=266.14  Aligned_cols=265  Identities=17%  Similarity=0.090  Sum_probs=190.4

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~  181 (606)
                      +.++.+++.+..+|.... +++++|++++|.+..++...|.++++|++|++++|.++. .|..++++++|++|++++|.+
T Consensus         7 ~~~~cs~~~L~~ip~~~~-~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A            7 EVADCSHLKLTQVPDDLP-TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             SEEECCSSCCSSCCSCSC-TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC
T ss_pred             CeeECCCCCccccccccC-CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc
Confidence            467888888988887654 789999999999999998878999999999999999998 577889999999999999999


Q ss_pred             CC-C-cccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371          182 KD-I-AIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG  258 (606)
Q Consensus       182 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~  258 (606)
                      +. | ..++++++|++|++++|.++.+| ..++++++|++|++++|...+..|.. ++++++|++|++++|.+....+  
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~--  162 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGT-QVQLENLQELLLSNNKIQALKS--  162 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCS-SSCCTTCCEEECCSSCCCCBCH--
T ss_pred             CccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchh-hcccccCCEEEccCCcccccCH--
Confidence            88 5 46999999999999999999887 57899999999999998876666655 8899999999999998876654  


Q ss_pred             CCccchHhhc--cCCCCCEEEEeeCCCCCCCcc-ccc-cCCcEEEEEeCCCCCCCCCCc---ccCCCCCcEEEecCcccc
Q 007371          259 GSNASLVELE--RLTKLATLEIEVADAEILPPN-FVS-VELQRYRIRIGDESEDEFDPL---LVKSEAPRLMMLKGLEKV  331 (606)
Q Consensus       259 ~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~-~~~-~~L~~L~l~~~~~~~~~~~~~---l~~~~~L~~L~L~~~~~~  331 (606)
                            ..++  .+++|++|++++|.+..++.. +.. .+|+.+.+..... .......   ....++|+.|++++|.+.
T Consensus       163 ------~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l-~~~~~~~~~~~l~~~~L~~L~L~~n~l~  235 (680)
T 1ziw_A          163 ------EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL-GPSLTEKLCLELANTSIRNLSLSNSQLS  235 (680)
T ss_dssp             ------HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCC-HHHHHHHHHHHHTTSCCCEEECTTSCCC
T ss_pred             ------HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccccc-ChhhHHHHHHHhhhccccEEEccCCccc
Confidence                  4433  568999999999988766543 222 5666665421110 0000000   001245666666665553


Q ss_pred             cccccchhHHHh-hccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          332 SILQENDGTKML-LQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       332 ~~~~~~~~~~~~-l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      +..+  .++... .++|+.|++++|......+..+.   .+++|++|++++|.
T Consensus       236 ~~~~--~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~  283 (680)
T 1ziw_A          236 TTSN--TTFLGLKWTNLTMLDLSYNNLNVVGNDSFA---WLPQLEYFFLEYNN  283 (680)
T ss_dssp             EECT--TTTGGGGGSCCCEEECTTSCCCEECTTTTT---TCTTCCEEECCSCC
T ss_pred             ccCh--hHhhccCcCCCCEEECCCCCcCccCccccc---CcccccEeeCCCCc
Confidence            3221  122211 12366666666544333333333   56666666666654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=8.5e-29  Score=266.97  Aligned_cols=411  Identities=17%  Similarity=0.118  Sum_probs=285.3

Q ss_pred             CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc--CCccccCCCCCcEEE
Q 007371          100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS--LPSSLGCLINLQTLC  175 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~  175 (606)
                      +++++|++++|.+..++. .. .+++|++|++++|.+..++...|.++++|++|++++|.++.  .|..++++++|++|+
T Consensus        50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~  129 (549)
T 2z81_A           50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR  129 (549)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred             CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence            889999999999977764 33 89999999999999999998878999999999999999985  577899999999999


Q ss_pred             eeCCC-CCC-C-cccCCCCCCCEeeecCCcCCc-ccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCC
Q 007371          176 LDYCR-LKD-I-AIVGQLKKLEILILARSTIKQ-LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFS  251 (606)
Q Consensus       176 l~~~~-~~~-~-~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~  251 (606)
                      +++|. +.. + ..+.++++|++|++++|.++. .|..++.+++|++|++++|. ...+|...++.+++|++|++++|.+
T Consensus       130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l  208 (549)
T 2z81_A          130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNL  208 (549)
T ss_dssp             EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB-STTHHHHHHHSTTTBSEEEEESCBC
T ss_pred             CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc-ccccchhhHhhcccccEEEccCCcc
Confidence            99998 444 4 689999999999999999984 68899999999999999865 4567776567899999999999988


Q ss_pred             CCccccCC-----------------------CccchHhhccCCCCCEEEEeeCCCCCCCcc-------c-cccCCcEEEE
Q 007371          252 GWEKVEGG-----------------------SNASLVELERLTKLATLEIEVADAEILPPN-------F-VSVELQRYRI  300 (606)
Q Consensus       252 ~~~~~~~~-----------------------~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-------~-~~~~L~~L~l  300 (606)
                      ........                       .......+..+++|+.+++.++....++..       + ...+++.+.+
T Consensus       209 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l  288 (549)
T 2z81_A          209 ARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTI  288 (549)
T ss_dssp             TTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEE
T ss_pred             ccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccc
Confidence            76421000                       001112234556667777766544322111       1 1256666666


Q ss_pred             EeCCCCCCC----CCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcE
Q 007371          301 RIGDESEDE----FDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKH  376 (606)
Q Consensus       301 ~~~~~~~~~----~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~  376 (606)
                      .........    .........+++.+++++|.+.   ..|.++...+++|++|++++|.....+|......+.+++|++
T Consensus       289 ~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~---~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~  365 (549)
T 2z81_A          289 RRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF---LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT  365 (549)
T ss_dssp             ESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC---CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCE
T ss_pred             cccccchhhhcccchhhhhhcccceEEEeccCccc---cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcE
Confidence            433221111    0011223456777777776652   234444444577777777777655544322111336777777


Q ss_pred             EEeecCCCceEeccccccccccccccccccch-h-----hhhhhhhhhccccccceeccccccccccccCCCCCccccCC
Q 007371          377 LHVKSCSEILHIVGSVRREEGELRRWEGNLNS-T-----IQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNN  450 (606)
Q Consensus       377 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~-----i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~  450 (606)
                      |++++|. ++.+...     +.....+++|+. .     +...+..+..+++|+.|++.++. +..++..      .+++
T Consensus       366 L~Ls~N~-l~~~~~~-----~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~------~~~~  432 (549)
T 2z81_A          366 LVLSQNH-LRSMQKT-----GEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG-IRVVKTC------IPQT  432 (549)
T ss_dssp             EECTTSC-CCCHHHH-----HHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSC-CSCCCTT------SCTT
T ss_pred             EEccCCc-ccccccc-----hhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCC-cccccch------hcCC
Confidence            7777764 3322100     000334555555 2     22333444556677779999875 5544322      2369


Q ss_pred             ccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccc
Q 007371          451 LFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFT  530 (606)
Q Consensus       451 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~  530 (606)
                      |++|++++| +++.++     ..+++|++|++++|. ++.++..            ..+++|+.|++++| +++.++.  
T Consensus       433 L~~L~Ls~N-~l~~~~-----~~l~~L~~L~Ls~N~-l~~ip~~------------~~l~~L~~L~Ls~N-~l~~~~~--  490 (549)
T 2z81_A          433 LEVLDVSNN-NLDSFS-----LFLPRLQELYISRNK-LKTLPDA------------SLFPVLLVMKISRN-QLKSVPD--  490 (549)
T ss_dssp             CSEEECCSS-CCSCCC-----CCCTTCCEEECCSSC-CSSCCCG------------GGCTTCCEEECCSS-CCCCCCT--
T ss_pred             ceEEECCCC-Chhhhc-----ccCChhcEEECCCCc-cCcCCCc------------ccCccCCEEecCCC-ccCCcCH--
Confidence            999999996 687762     478999999999974 7766542            35899999999997 7777765  


Q ss_pred             cccccCCCcceEeeccCCC
Q 007371          531 RNIIELPKLRYLTIENCPD  549 (606)
Q Consensus       531 ~~~~~~~~L~~L~i~~Cp~  549 (606)
                      .....+++|+.|+++++|-
T Consensus       491 ~~~~~l~~L~~L~l~~N~~  509 (549)
T 2z81_A          491 GIFDRLTSLQKIWLHTNPW  509 (549)
T ss_dssp             TGGGGCTTCCEEECCSSCB
T ss_pred             HHHhcCcccCEEEecCCCc
Confidence            4577899999999999983

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=8.7e-29  Score=274.81  Aligned_cols=379  Identities=13%  Similarity=0.108  Sum_probs=283.0

Q ss_pred             CCCcccCCcc-cccccceeecccccccc------------------cchhH-hcCCCCCcEEEeeCCcCcc-CCccccCC
Q 007371          110 GGIQVLPERL-QCPCLELLHTEGDGSMQ------------------VSDHF-FKGTEGLKVLNFTRIHFSS-LPSSLGCL  168 (606)
Q Consensus       110 ~~~~~l~~~~-~l~~L~~L~~~~~~~~~------------------~~~~~-~~~l~~L~~L~l~~~~l~~-lp~~~~~l  168 (606)
                      |.+..+|..+ ++++|++|++++|.+..                  +|..+ |.++++|++|++++|.+.. +|..++++
T Consensus       435 N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L  514 (876)
T 4ecn_A          435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL  514 (876)
T ss_dssp             CEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC
T ss_pred             CcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCC
Confidence            4554488777 89999999999998877                  88876 3489999999999998766 99999999


Q ss_pred             CCCcEEEeeCCC-CCC---CcccCCCC-------CCCEeeecCCcCCcccc--cccCCCCCCEEecCCCcccccccHHHh
Q 007371          169 INLQTLCLDYCR-LKD---IAIVGQLK-------KLEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNVI  235 (606)
Q Consensus       169 ~~L~~L~l~~~~-~~~---~~~i~~l~-------~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i  235 (606)
                      ++|++|++++|. +++   |..++++.       +|++|++++|.++.+|.  .++++++|++|++++|... .+| . +
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~-~  591 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE-A-F  591 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC-C-C
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch-h-h
Confidence            999999999998 774   55555554       99999999999999999  9999999999999998765 888 4 9


Q ss_pred             hCCCCCCEEEccCCCCCCccccCCCccchHhhccCCC-CCEEEEeeCCCCCCCccccc---cCCcEEEEEeCCCCC--CC
Q 007371          236 SKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTK-LATLEIEVADAEILPPNFVS---VELQRYRIRIGDESE--DE  309 (606)
Q Consensus       236 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~--~~  309 (606)
                      +.+++|++|++++|.+...+         ..+.++++ |+.|++++|.+..+|..+..   ++|+.|++..+....  ..
T Consensus       592 ~~L~~L~~L~Ls~N~l~~lp---------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~  662 (876)
T 4ecn_A          592 GTNVKLTDLKLDYNQIEEIP---------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN  662 (876)
T ss_dssp             CTTSEESEEECCSSCCSCCC---------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSS
T ss_pred             cCCCcceEEECcCCccccch---------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCcccc
Confidence            99999999999999988443         56889999 99999999999999987654   459999985433221  11


Q ss_pred             CCCccc--CCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccC-----CCCCCCCcEEEeecC
Q 007371          310 FDPLLV--KSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD-----GEGFPRLKHLHVKSC  382 (606)
Q Consensus       310 ~~~~l~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~-----~~~l~~L~~L~l~~c  382 (606)
                      ++..+.  ..++|+.|++++|.+.   ..|.++...+++|+.|++++|... .+|..+..     ..++++|++|++++|
T Consensus       663 l~~~l~~~~~~~L~~L~Ls~N~L~---~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N  738 (876)
T 4ecn_A          663 ISCSMDDYKGINASTVTLSYNEIQ---KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFN  738 (876)
T ss_dssp             CSSCTTTCCCCCEEEEECCSSCCC---SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSS
T ss_pred             chhhhccccCCCcCEEEccCCcCC---ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCC
Confidence            112222  3458999999998875   345566666799999999998544 67765431     123459999999999


Q ss_pred             CCceEecccccccccccc--ccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccC-
Q 007371          383 SEILHIVGSVRREEGELR--RWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDC-  459 (606)
Q Consensus       383 ~~l~~~~~~~~~~~~~~~--~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C-  459 (606)
                      . ++.+...        .  ..+++|+.                 |++.++. +..++.    .+..+++|+.|+++++ 
T Consensus       739 ~-L~~lp~~--------l~~~~l~~L~~-----------------L~Ls~N~-L~~lp~----~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          739 K-LTSLSDD--------FRATTLPYLSN-----------------MDVSYNC-FSSFPT----QPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             C-CCCCCGG--------GSTTTCTTCCE-----------------EECCSSC-CSSCCC----GGGGCTTCCEEECCCCB
T ss_pred             C-CccchHH--------hhhccCCCcCE-----------------EEeCCCC-CCccch----hhhcCCCCCEEECCCCC
Confidence            4 4443110        2  25677777                 9999864 444543    3478999999999873 


Q ss_pred             ----CCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccc------c
Q 007371          460 ----TNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCN------F  529 (606)
Q Consensus       460 ----~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~------~  529 (606)
                          +++....|.. +.++++|++|++++|. +..++..             .+++|+.|+|++|+ +..+..      .
T Consensus       788 ~ls~N~l~~~ip~~-l~~L~~L~~L~Ls~N~-L~~Ip~~-------------l~~~L~~LdLs~N~-l~~i~~~~~~~~~  851 (876)
T 4ecn_A          788 DAEGNRILRQWPTG-ITTCPSLIQLQIGSND-IRKVDEK-------------LTPQLYILDIADNP-NISIDVTSVCPYI  851 (876)
T ss_dssp             CTTCCBCCCCCCTT-GGGCSSCCEEECCSSC-CCBCCSC-------------CCSSSCEEECCSCT-TCEEECGGGHHHH
T ss_pred             CcccccccccChHH-HhcCCCCCEEECCCCC-CCccCHh-------------hcCCCCEEECCCCC-CCccChHHccccc
Confidence                3444444644 5789999999999987 5776542             34799999999996 333321      0


Q ss_pred             ccccccCCCcceEeeccCCCCc
Q 007371          530 TRNIIELPKLRYLTIENCPDME  551 (606)
Q Consensus       530 ~~~~~~~~~L~~L~i~~Cp~L~  551 (606)
                      ......+..-+..+|.+||.|.
T Consensus       852 ~~~~~~L~~n~~~~I~gC~~L~  873 (876)
T 4ecn_A          852 EAGMYVLLYDKTQDIRGCDALG  873 (876)
T ss_dssp             HTTCCEEECCTTSEEESCGGGC
T ss_pred             cchheeecCCCccccCCCCCcc
Confidence            0111222223344778998764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=4.6e-28  Score=259.33  Aligned_cols=388  Identities=14%  Similarity=0.113  Sum_probs=252.1

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~  181 (606)
                      +++++++|.+..+|.... ++|++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.+
T Consensus         3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l   81 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKL   81 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCC
T ss_pred             ceEecCCCCccccccccc-ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCce
Confidence            689999999988887665 8999999999999888877779999999999999999884 77899999999999999998


Q ss_pred             CC-CcccCCCCCCCEeeecCCcCCc--ccccccCCCCCCEEecCCCcccccccHHHhhCCCCC--CEEEccCCCC--CCc
Q 007371          182 KD-IAIVGQLKKLEILILARSTIKQ--LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL--EELYMGNSFS--GWE  254 (606)
Q Consensus       182 ~~-~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L--~~L~l~~~~~--~~~  254 (606)
                      +. |..  .+++|++|++++|.++.  +|..++++++|++|++++|...+   .. ++.+++|  ++|++++|.+  ...
T Consensus        82 ~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~-~~~l~~L~L~~L~l~~n~l~~~~~  155 (520)
T 2z7x_B           82 VKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SS-VLPIAHLNISKVLLVLGETYGEKE  155 (520)
T ss_dssp             CEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GG-GGGGTTSCEEEEEEEECTTTTSSC
T ss_pred             eecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hh-ccccccceeeEEEeeccccccccc
Confidence            88 544  89999999999999885  57899999999999999976544   22 6777888  9999998876  222


Q ss_pred             ccc-CCC-----------------------------------------------ccchHhhccCCCCCEEEEeeCCCCC-
Q 007371          255 KVE-GGS-----------------------------------------------NASLVELERLTKLATLEIEVADAEI-  285 (606)
Q Consensus       255 ~~~-~~~-----------------------------------------------~~~~~~l~~l~~L~~L~l~~~~~~~-  285 (606)
                      .+. ...                                               ...+..++.+++|+.|++..+.+.. 
T Consensus       156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~  235 (520)
T 2z7x_B          156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN  235 (520)
T ss_dssp             CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred             ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence            211 000                                               0011234555566666665544321 


Q ss_pred             ----CCccccccCCcEEEEEeCCCCCCCCCCcc-----cCCCCCcEEEecCcccccccccc-hhHHHhhc--cccceecc
Q 007371          286 ----LPPNFVSVELQRYRIRIGDESEDEFDPLL-----VKSEAPRLMMLKGLEKVSILQEN-DGTKMLLQ--RTEGLWLE  353 (606)
Q Consensus       286 ----~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-----~~~~~L~~L~L~~~~~~~~~~~~-~~~~~~l~--~L~~L~l~  353 (606)
                          ++.....++|+.|++..+. ....++..+     ..++.|+.+++++|.+    ..| .++...++  +|+.|+++
T Consensus       236 ~~~~~~~~~~~~~L~~L~l~~n~-l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~----~~p~~~~~~~~~~~~L~~L~l~  310 (520)
T 2z7x_B          236 SFIRILQLVWHTTVWYFSISNVK-LQGQLDFRDFDYSGTSLKALSIHQVVSDVF----GFPQSYIYEIFSNMNIKNFTVS  310 (520)
T ss_dssp             HHHHHHHHHHTSSCSEEEEEEEE-EESCCCCCCCCCCSCCCCEEEEEEEEECCC----CSCTHHHHHHHHTCCCSEEEEE
T ss_pred             HHHHHHHHhhhCcccEEEeeccc-ccCccccchhhcccccCceeEeccccccce----ecchhhhhcccccCceeEEEcC
Confidence                1111122488888884432 222344445     7888999999998776    223 44544443  48899998


Q ss_pred             cccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccccc
Q 007371          354 TLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPR  433 (606)
Q Consensus       354 ~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~  433 (606)
                      +|.... .+.    ...+++|++|++++|.--..+        +.....+++|+.                 |.+.++. 
T Consensus       311 ~n~l~~-~~~----~~~l~~L~~L~Ls~n~l~~~~--------~~~~~~l~~L~~-----------------L~L~~N~-  359 (520)
T 2z7x_B          311 GTRMVH-MLC----PSKISPFLHLDFSNNLLTDTV--------FENCGHLTELET-----------------LILQMNQ-  359 (520)
T ss_dssp             SSCCCC-CCC----CSSCCCCCEEECCSSCCCTTT--------TTTCCCCSSCCE-----------------EECCSSC-
T ss_pred             CCcccc-ccc----hhhCCcccEEEeECCccChhh--------hhhhccCCCCCE-----------------EEccCCc-
Confidence            875432 221    137889999999888522211        111344566666                 6666553 


Q ss_pred             ccccccCCCCCccccCCccEEEeccCCCccc-ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCC-Cc
Q 007371          434 LKEIWHGQALPVSFFNNLFDLVVDDCTNMSS-AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLF-PK  511 (606)
Q Consensus       434 l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~-~~  511 (606)
                      +..++... ..++.+++|++|+++++ .++. + |...+..+++|++|++++|.--..++.              .+ ++
T Consensus       360 l~~l~~~~-~~~~~l~~L~~L~Ls~N-~l~~~l-~~~~~~~l~~L~~L~Ls~N~l~~~~~~--------------~l~~~  422 (520)
T 2z7x_B          360 LKELSKIA-EMTTQMKSLQQLDISQN-SVSYDE-KKGDCSWTKSLLSLNMSSNILTDTIFR--------------CLPPR  422 (520)
T ss_dssp             CCBHHHHH-HHHTTCTTCCEEECCSS-CCBCCG-GGCSCCCCTTCCEEECCSSCCCGGGGG--------------SCCTT
T ss_pred             cCccccch-HHHhhCCCCCEEECCCC-cCCccc-ccchhccCccCCEEECcCCCCCcchhh--------------hhccc
Confidence            22211100 11345667777777764 4554 4 333345566777777766652222211              12 56


Q ss_pred             cceEeeccccccccccccccccccCCCcceEeeccCCCCccccc
Q 007371          512 LFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFIS  555 (606)
Q Consensus       512 L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~  555 (606)
                      |+.|++++| +++.+|.   ....+++|+.|++++| +++.+|.
T Consensus       423 L~~L~Ls~N-~l~~ip~---~~~~l~~L~~L~L~~N-~l~~l~~  461 (520)
T 2z7x_B          423 IKVLDLHSN-KIKSIPK---QVVKLEALQELNVASN-QLKSVPD  461 (520)
T ss_dssp             CCEEECCSS-CCCCCCG---GGGGCTTCCEEECCSS-CCCCCCT
T ss_pred             CCEEECCCC-cccccch---hhhcCCCCCEEECCCC-cCCccCH
Confidence            777777666 5555554   4446677777777666 4666553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.96  E-value=1.8e-27  Score=268.58  Aligned_cols=432  Identities=15%  Similarity=0.122  Sum_probs=242.4

Q ss_pred             CCCeEEEecCCCCcccC-Ccc-cccccceeecccc-cccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEE
Q 007371          100 KDPIAISLTYGGIQVLP-ERL-QCPCLELLHTEGD-GSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLC  175 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~-~~~-~l~~L~~L~~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~  175 (606)
                      +.+++|++++|.+..+. ... .+++|++|++++| ....++...|.++++|++|++++|.+.. .|..++++++|++|+
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  103 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELR  103 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEee
Confidence            67899999999996664 333 8899999998888 5566756667899999999999999988 588899999999999


Q ss_pred             eeCCCCCC--Ccc--cCCCCCCCEeeecCCcCCccc--ccccCCCCCCEEecCCCcccccccHHHhhCC--CCCCEEEcc
Q 007371          176 LDYCRLKD--IAI--VGQLKKLEILILARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAPNVISKL--SQLEELYMG  247 (606)
Q Consensus       176 l~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l--~~L~~L~l~  247 (606)
                      +++|.+.+  |..  ++++++|++|++++|.++.++  ..++++++|++|++++|...+..+.. ++.+  ++|+.|+++
T Consensus       104 Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L~  182 (844)
T 3j0a_A          104 LYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSLA  182 (844)
T ss_dssp             CTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEEC
T ss_pred             CcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEECC
Confidence            99998876  443  889999999999999888653  56889999999999988766655555 6655  677777777


Q ss_pred             CCCCCCccccCCCccchHhhccCC------CCCEEEEeeCCCC-CCCcccc-----------------------------
Q 007371          248 NSFSGWEKVEGGSNASLVELERLT------KLATLEIEVADAE-ILPPNFV-----------------------------  291 (606)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~l~------~L~~L~l~~~~~~-~~~~~~~-----------------------------  291 (606)
                      +|.+....+        ..++.+.      .|+.|++++|.+. ..+..+.                             
T Consensus       183 ~n~l~~~~~--------~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~  254 (844)
T 3j0a_A          183 ANSLYSRVS--------VDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKD  254 (844)
T ss_dssp             CSBSCCCCC--------CCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTT
T ss_pred             CCccccccc--------cchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCC
Confidence            776554332        1122222      2555555555331 1111100                             


Q ss_pred             ----------ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371          292 ----------SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV  361 (606)
Q Consensus       292 ----------~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  361 (606)
                                .++|+.|++.. +......+..+..+++|+.|++++|.+.+..+  ..+. .+++|++|++++|......
T Consensus       255 ~~~~~f~~l~~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~--~~~~-~l~~L~~L~Ls~N~l~~~~  330 (844)
T 3j0a_A          255 PDQNTFAGLARSSVRHLDLSH-GFVFSLNSRVFETLKDLKVLNLAYNKINKIAD--EAFY-GLDNLQVLNLSYNLLGELY  330 (844)
T ss_dssp             GGGTTTTTTTTSCCCEEECTT-CCCCEECSCCSSSCCCCCEEEEESCCCCEECT--TTTT-TCSSCCEEEEESCCCSCCC
T ss_pred             CChhhhhccccCCccEEECCC-CcccccChhhhhcCCCCCEEECCCCcCCCCCh--HHhc-CCCCCCEEECCCCCCCccC
Confidence                      13455555421 11222223445556666666666655533221  1111 2356666666665443333


Q ss_pred             cccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccch-hhhhhh-hhhhccccccceecccccccccccc
Q 007371          362 VHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQKCY-EEMIGFRDIIHLQLSHFPRLKEIWH  439 (606)
Q Consensus       362 ~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~~~-~~~~~~~~L~~L~l~~~~~l~~~~~  439 (606)
                      +..+.   ++++|++|++++|. +..+..       .....+++|+. .+..+. ..+..+++|+.|.+.++. +..++.
T Consensus       331 ~~~~~---~l~~L~~L~L~~N~-i~~~~~-------~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~-l~~l~~  398 (844)
T 3j0a_A          331 SSNFY---GLPKVAYIDLQKNH-IAIIQD-------QTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNK-LVTLPK  398 (844)
T ss_dssp             SCSCS---SCTTCCEEECCSCC-CCCCCS-------SCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCC-CCCCCC
T ss_pred             HHHhc---CCCCCCEEECCCCC-CCccCh-------hhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCC-cccccc
Confidence            33333   56666666666553 222210       00122344444 111111 011113333445555432 222221


Q ss_pred             CC------------------CCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccc
Q 007371          440 GQ------------------ALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINAD  501 (606)
Q Consensus       440 ~~------------------~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~  501 (606)
                      ..                  ......+++|+.|+++++ +++.+.+......+++|++|+++++. +..++..     ..
T Consensus       399 ~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~~~~-----~~  471 (844)
T 3j0a_A          399 INLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM-LQLAWET-----EL  471 (844)
T ss_dssp             CCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC-CSSSCCS-----CC
T ss_pred             cccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc-ccccccc-----cc
Confidence            11                  000113444555555442 33333221112234445555554432 2211110     00


Q ss_pred             cCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccccC--CccccccccCh
Q 007371          502 KEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISN--STSVLHMTADN  567 (606)
Q Consensus       502 ~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~--~~~~~~l~~~~  567 (606)
                      ....+..+++|+.|++++| +++.++.  .....+++|+.|+++++ +|+.+|..  +.+++.++++.
T Consensus       472 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~--~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~~L~~L~Ls~  535 (844)
T 3j0a_A          472 CWDVFEGLSHLQVLYLNHN-YLNSLPP--GVFSHLTALRGLSLNSN-RLTVLSHNDLPANLEILDISR  535 (844)
T ss_dssp             CSSCSSCBCCEECCCCCHH-HHTTCCT--TSSSSCCSCSEEEEESC-CCSSCCCCCCCSCCCEEEEEE
T ss_pred             chhhhcCcccccEEECCCC-cccccCh--hHccchhhhheeECCCC-CCCccChhhhhccccEEECCC
Confidence            1233556788888888887 6777665  44567888888888887 67777653  23444444433

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.96  E-value=1.2e-26  Score=244.37  Aligned_cols=346  Identities=19%  Similarity=0.201  Sum_probs=224.6

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      ..++.|++.++.+..++....+++|++|++++|.+..++.  +.++++|++|++++|.+..++. ++++++|++|++++|
T Consensus        46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n  122 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  122 (466)
T ss_dssp             HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             ccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCC
Confidence            7789999999999888876689999999999999888887  6889999999999999988776 899999999999999


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .+...+.+.++++|++|++++|.+..+| .++.+++|++|++.+ . ...++.  ++++++|++|++++|.+...     
T Consensus       123 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~-~-~~~~~~--~~~l~~L~~L~l~~n~l~~~-----  192 (466)
T 1o6v_A          123 QITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGN-Q-VTDLKP--LANLTTLERLDISSNKVSDI-----  192 (466)
T ss_dssp             CCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEE-S-CCCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred             CCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCC-c-ccCchh--hccCCCCCEEECcCCcCCCC-----
Confidence            9888444899999999999999888876 488999999999864 2 334443  78999999999999876554     


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchh
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG  339 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~  339 (606)
                           ..+..+++|++|++++|.+..++.....++|+.|++..+....   ...+..+                      
T Consensus       193 -----~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~---~~~l~~l----------------------  242 (466)
T 1o6v_A          193 -----SVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD---IGTLASL----------------------  242 (466)
T ss_dssp             -----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC---CGGGGGC----------------------
T ss_pred             -----hhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCccc---chhhhcC----------------------
Confidence                 3478889999999998887665543223555555553221111   1223344                      


Q ss_pred             HHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhc
Q 007371          340 TKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIG  419 (606)
Q Consensus       340 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~  419 (606)
                           ++|+.|++++|.... ++. +   ..+++|++|++++|. +..+.       +  ...+++|+.           
T Consensus       243 -----~~L~~L~l~~n~l~~-~~~-~---~~l~~L~~L~l~~n~-l~~~~-------~--~~~l~~L~~-----------  291 (466)
T 1o6v_A          243 -----TNLTDLDLANNQISN-LAP-L---SGLTKLTELKLGANQ-ISNIS-------P--LAGLTALTN-----------  291 (466)
T ss_dssp             -----TTCSEEECCSSCCCC-CGG-G---TTCTTCSEEECCSSC-CCCCG-------G--GTTCTTCSE-----------
T ss_pred             -----CCCCEEECCCCcccc-chh-h---hcCCCCCEEECCCCc-cCccc-------c--ccCCCccCe-----------
Confidence                 445555555443222 221 2   245555555555553 11110       0  122333333           


Q ss_pred             cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccc
Q 007371          420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELIN  499 (606)
Q Consensus       420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~  499 (606)
                            |++.++. +..+     .+.+.+++|+.|++++| +++.+.+   +..+++|++|++++|. +..++       
T Consensus       292 ------L~L~~n~-l~~~-----~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~l~~n~-l~~~~-------  347 (466)
T 1o6v_A          292 ------LELNENQ-LEDI-----SPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFYNNK-VSDVS-------  347 (466)
T ss_dssp             ------EECCSSC-CSCC-----GGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSSC-CCCCG-------
T ss_pred             ------EEcCCCc-ccCc-----hhhcCCCCCCEEECcCC-cCCCchh---hccCccCCEeECCCCc-cCCch-------
Confidence                  5555542 2222     12345566666666664 4555533   3456666666666653 44332       


Q ss_pred             cccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371          500 ADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI  554 (606)
Q Consensus       500 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~  554 (606)
                           .+..+++|+.|++.+| .+..+++    ...+++|+.|++.+|+ +..+|
T Consensus       348 -----~l~~l~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~l~~n~-~~~~p  391 (466)
T 1o6v_A          348 -----SLANLTNINWLSAGHN-QISDLTP----LANLTRITQLGLNDQA-WTNAP  391 (466)
T ss_dssp             -----GGTTCTTCCEEECCSS-CCCBCGG----GTTCTTCCEEECCCEE-EECCC
T ss_pred             -----hhccCCCCCEEeCCCC-ccCccch----hhcCCCCCEEeccCCc-ccCCc
Confidence                 1235666666666665 3444432    4456666666666653 44433

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=6.5e-27  Score=246.08  Aligned_cols=372  Identities=14%  Similarity=0.125  Sum_probs=222.9

Q ss_pred             EEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-C-CccccCCCCCcEEEeeCCCC
Q 007371          104 AISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-L-PSSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       104 ~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l-p~~~~~l~~L~~L~l~~~~~  181 (606)
                      .++.+++.+..+|.  -.++|++|++++|.+..++...|.++++|++|++++|.+.. + |..+.++++|++|++++|.+
T Consensus        14 ~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l   91 (455)
T 3v47_A           14 NAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF   91 (455)
T ss_dssp             EEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred             ccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence            34455555555555  22456666666666655544445666666666666665542 3 34556666666666666665


Q ss_pred             CC--CcccCCCCCCCEeeecCCcCCc-cccc--ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371          182 KD--IAIVGQLKKLEILILARSTIKQ-LPLE--IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV  256 (606)
Q Consensus       182 ~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~  256 (606)
                      ..  |..++++++|++|++++|.++. +|..  ++++++|++|++++|...+..|...++++++|++|++++|.+....+
T Consensus        92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A           92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            55  4556666666666666666653 2333  55666666666666554444444435566666666666665554433


Q ss_pred             cCCCccchHhhccC--CCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371          257 EGGSNASLVELERL--TKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL  334 (606)
Q Consensus       257 ~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~  334 (606)
                              ..+..+  .+|+.|++..+.+..++.....               +.....+..+++|+.|++++|.+.+..
T Consensus       172 --------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~---------------~~~~~~~~~~~~L~~L~Ls~n~l~~~~  228 (455)
T 3v47_A          172 --------EDLLNFQGKHFTLLRLSSITLQDMNEYWLG---------------WEKCGNPFKNTSITTLDLSGNGFKESM  228 (455)
T ss_dssp             --------TTSGGGTTCEEEEEECTTCBCTTCSTTCTT---------------HHHHCCTTTTCEEEEEECTTSCCCHHH
T ss_pred             --------hhhhccccccccccccccCcccccchhhcc---------------ccccccccccceeeeEecCCCcccccc
Confidence                    233333  3555555555555443322100               000011234567888888888775543


Q ss_pred             ccchhHHHh--hccccceecccccCcccccc----------cccCCCCCCCCcEEEeecCCCceEecccccccccccccc
Q 007371          335 QENDGTKML--LQRTEGLWLETLEGVQSVVH----------ELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRW  402 (606)
Q Consensus       335 ~~~~~~~~~--l~~L~~L~l~~~~~~~~~~~----------~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  402 (606)
                      +  ..+...  .++|+.|++.++........          .+. ....++|++|++++|.-....        +.....
T Consensus       229 ~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~--------~~~~~~  297 (455)
T 3v47_A          229 A--KRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFK-GLEASGVKTCDLSKSKIFALL--------KSVFSH  297 (455)
T ss_dssp             H--HHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTG-GGTTSCCCEEECCSSCCCEEC--------TTTTTT
T ss_pred             h--hhhhccccccceeeEeeccccccccccchhhhccCcccccc-cccccCceEEEecCccccccc--------hhhccc
Confidence            2  223222  27788888887754332110          011 112468999999998643322        111344


Q ss_pred             ccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEE
Q 007371          403 EGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEV  482 (606)
Q Consensus       403 ~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i  482 (606)
                      +++|+.                 |++.++. +..+..   ..+..+++|++|++++| .++.+.+ ..+..+++|++|++
T Consensus       298 l~~L~~-----------------L~Ls~n~-l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L  354 (455)
T 3v47_A          298 FTDLEQ-----------------LTLAQNE-INKIDD---NAFWGLTHLLKLNLSQN-FLGSIDS-RMFENLDKLEVLDL  354 (455)
T ss_dssp             CTTCCE-----------------EECTTSC-CCEECT---TTTTTCTTCCEEECCSS-CCCEECG-GGGTTCTTCCEEEC
T ss_pred             CCCCCE-----------------EECCCCc-ccccCh---hHhcCcccCCEEECCCC-ccCCcCh-hHhcCcccCCEEEC
Confidence            566666                 9998875 333321   23467899999999995 6787744 44578999999999


Q ss_pred             ecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCC
Q 007371          483 RNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCP  548 (606)
Q Consensus       483 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp  548 (606)
                      ++|. +..++          +..+..+++|++|+++++ +++.++.  .....+++|++|+++++|
T Consensus       355 s~N~-l~~~~----------~~~~~~l~~L~~L~L~~N-~l~~~~~--~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          355 SYNH-IRALG----------DQSFLGLPNLKELALDTN-QLKSVPD--GIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CSSC-CCEEC----------TTTTTTCTTCCEEECCSS-CCSCCCT--TTTTTCTTCCEEECCSSC
T ss_pred             CCCc-ccccC----------hhhccccccccEEECCCC-ccccCCH--hHhccCCcccEEEccCCC
Confidence            9975 55543          234567999999999997 7777765  445678999999998876

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=8.6e-27  Score=263.08  Aligned_cols=425  Identities=14%  Similarity=0.065  Sum_probs=274.5

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCc-cC-CccccCCCCCcEEEeeCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFS-SL-PSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l-p~~~~~l~~L~~L~l~~~~  180 (606)
                      +..+.+++++..+|.  ..+++++|++++|.+..++...|.++++|++|++++|... .+ |..|+++++|++|++++|.
T Consensus         7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~   84 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK   84 (844)
T ss_dssp             EEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred             eEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence            467788889999998  5679999999999988887666799999999999999544 45 7889999999999999999


Q ss_pred             CCC--CcccCCCCCCCEeeecCCcCCc-cccc--ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          181 LKD--IAIVGQLKKLEILILARSTIKQ-LPLE--IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       181 ~~~--~~~i~~l~~L~~L~l~~~~l~~-lp~~--i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      +..  |..++++++|++|++++|.++. +|..  ++++++|++|++++|...+..+...++++++|++|++++|.+....
T Consensus        85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~  164 (844)
T 3j0a_A           85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC  164 (844)
T ss_dssp             CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred             CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence            987  7899999999999999999885 5554  8999999999999988766555333899999999999999887665


Q ss_pred             ccCCCccchHhhccC--CCCCEEEEeeCCCCC-CCcccc-------ccCCcEEEEEeCCCCCCCCCCcccC---------
Q 007371          256 VEGGSNASLVELERL--TKLATLEIEVADAEI-LPPNFV-------SVELQRYRIRIGDESEDEFDPLLVK---------  316 (606)
Q Consensus       256 ~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~-~~~~~~-------~~~L~~L~l~~~~~~~~~~~~~l~~---------  316 (606)
                      +        ..++.+  ++|+.|+++.|.+.. .|..+.       ...|+.|++..+ ......+..+..         
T Consensus       165 ~--------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~  235 (844)
T 3j0a_A          165 E--------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFS  235 (844)
T ss_dssp             S--------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSE
T ss_pred             H--------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccc
Confidence            4        556555  899999999988743 333322       134888888433 222211111111         


Q ss_pred             -----------------------------CCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccC
Q 007371          317 -----------------------------SEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD  367 (606)
Q Consensus       317 -----------------------------~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~  367 (606)
                                                   .++++.|++++|.+.+..+  ..+ ..+++|+.|++++|......+..+. 
T Consensus       236 L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~--~~~-~~l~~L~~L~L~~n~i~~~~~~~~~-  311 (844)
T 3j0a_A          236 LILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS--RVF-ETLKDLKVLNLAYNKINKIADEAFY-  311 (844)
T ss_dssp             EECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS--CCS-SSCCCCCEEEEESCCCCEECTTTTT-
T ss_pred             eecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccCh--hhh-hcCCCCCEEECCCCcCCCCChHHhc-
Confidence                                         2455666666655432211  111 1235666666666544333333333 


Q ss_pred             CCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccc
Q 007371          368 GEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSF  447 (606)
Q Consensus       368 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~  447 (606)
                        ++++|++|++++|. ++.+.       +.....+++|+.                 |++.++ .+..++..   .+..
T Consensus       312 --~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~-----------------L~L~~N-~i~~~~~~---~~~~  360 (844)
T 3j0a_A          312 --GLDNLQVLNLSYNL-LGELY-------SSNFYGLPKVAY-----------------IDLQKN-HIAIIQDQ---TFKF  360 (844)
T ss_dssp             --TCSSCCEEEEESCC-CSCCC-------SCSCSSCTTCCE-----------------EECCSC-CCCCCCSS---CSCS
T ss_pred             --CCCCCCEEECCCCC-CCccC-------HHHhcCCCCCCE-----------------EECCCC-CCCccChh---hhcC
Confidence              56666666666653 22110       000223344444                 777765 34443322   2456


Q ss_pred             cCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccc---------cc--cCCCCCCCCccceEe
Q 007371          448 FNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELIN---------AD--KEHIGPLFPKLFKLR  516 (606)
Q Consensus       448 l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~---------~~--~~~~~~~~~~L~~L~  516 (606)
                      +++|++|+++++ .++.+ +     .+++|+.|+++++. +..++.......         ..  ....+..+|+|+.|+
T Consensus       361 l~~L~~L~Ls~N-~l~~i-~-----~~~~L~~L~l~~N~-l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~  432 (844)
T 3j0a_A          361 LEKLQTLDLRDN-ALTTI-H-----FIPSIPDIFLSGNK-LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILI  432 (844)
T ss_dssp             CCCCCEEEEETC-CSCCC-S-----SCCSCSEEEEESCC-CCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEE
T ss_pred             CCCCCEEECCCC-CCCcc-c-----CCCCcchhccCCCC-cccccccccccceeecccCccccCchhhhhhcCCccceee
Confidence            777888888774 56655 2     26777777777654 444432100000         00  000123678899999


Q ss_pred             eccccccccccccccccccCCCcceEeeccCCCCcccc---------cCCccccccccChhh--------hhhhccccce
Q 007371          517 LTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI---------SNSTSVLHMTADNKE--------AQKLKSEKNL  579 (606)
Q Consensus       517 l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~---------~~~~~~~~l~~~~~~--------~~~l~~l~~l  579 (606)
                      ++++ +++.++. ......+++|+.|+++++. ++..+         .....++.+++.+..        +..+++|+.|
T Consensus       433 Ls~N-~l~~~~~-~~~~~~~~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  509 (844)
T 3j0a_A          433 LNQN-RFSSCSG-DQTPSENPSLEQLFLGENM-LQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGL  509 (844)
T ss_dssp             EESC-CCCCCCS-SSSSCSCTTCCBCEEESCC-CSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEE
T ss_pred             CCCC-ccccccc-ccccccCCccccccCCCCc-cccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhhee
Confidence            9887 4555433 1223447889999998874 43222         123456666666554        3466788888


Q ss_pred             eeccc
Q 007371          580 LVADQ  584 (606)
Q Consensus       580 ~i~~~  584 (606)
                      .++++
T Consensus       510 ~Ls~N  514 (844)
T 3j0a_A          510 SLNSN  514 (844)
T ss_dssp             EEESC
T ss_pred             ECCCC
Confidence            88887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=1.6e-26  Score=249.50  Aligned_cols=145  Identities=19%  Similarity=0.204  Sum_probs=121.2

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDY  178 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~  178 (606)
                      ...++++++++.+..+|.... +++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus        31 ~~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           31 ELESMVDYSNRNLTHVPKDLP-PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             --CCEEECTTSCCCSCCTTSC-TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCCcEEEcCCCCCccCCCCCC-CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence            344899999999988887554 7999999999999999877779999999999999999984 77899999999999999


Q ss_pred             CCCCC-CcccCCCCCCCEeeecCCcCCccc--ccccCCCCCCEEecCCCcccccccHHHhhCCCCC--CEEEccCCCC
Q 007371          179 CRLKD-IAIVGQLKKLEILILARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL--EELYMGNSFS  251 (606)
Q Consensus       179 ~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L--~~L~l~~~~~  251 (606)
                      |.++. |..  .+++|++|++++|.++.+|  ..++++++|++|++++|..... .   ++.+++|  ++|++++|.+
T Consensus       110 N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          110 NRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             SCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEESSC
T ss_pred             CcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeecccc
Confidence            99888 555  8999999999999998764  7899999999999999765432 2   4555666  9999998877

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=6.3e-26  Score=242.72  Aligned_cols=411  Identities=14%  Similarity=0.117  Sum_probs=264.0

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARS  201 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~  201 (606)
                      ++++++++.+..+|..++   ++|++|++++|.++.++ ..+.++++|++|++++|.++.  |..++++++|++|++++|
T Consensus         3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            578899999999998763   89999999999999965 689999999999999999988  689999999999999999


Q ss_pred             cCCcccccccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCC--CEEEE
Q 007371          202 TIKQLPLEIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKL--ATLEI  278 (606)
Q Consensus       202 ~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L--~~L~l  278 (606)
                      .++.+|..  .+++|++|++++|...+ .+|.. ++++++|++|++++|.+..           ..++.+++|  ++|++
T Consensus        80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~-~~~l~~L~~L~L~~n~l~~-----------~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKE-FGNMSQLKFLGLSTTHLEK-----------SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             CCCEEECC--CCCCCSEEECCSSCCSSCCCCGG-GGGCTTCCEEEEEESSCCG-----------GGGGGGTTSCEEEEEE
T ss_pred             ceeecCcc--ccCCccEEeccCCccccccchhh-hccCCcceEEEecCcccch-----------hhccccccceeeEEEe
Confidence            99999987  89999999999988665 46766 9999999999999998754           235666777  99999


Q ss_pred             eeCCC---CCCCccccccCCcEEEEEeCCC--CCCCCCC------------------------------cccCCCCCcEE
Q 007371          279 EVADA---EILPPNFVSVELQRYRIRIGDE--SEDEFDP------------------------------LLVKSEAPRLM  323 (606)
Q Consensus       279 ~~~~~---~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~------------------------------~l~~~~~L~~L  323 (606)
                      .+|.+   ...|..+..-..+.+++.....  .......                              .+..+++|+.|
T Consensus       146 ~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L  225 (520)
T 2z7x_B          146 VLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNL  225 (520)
T ss_dssp             EECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEE
T ss_pred             ecccccccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhc
Confidence            99887   2334433221112333321111  1111112                              23444555555


Q ss_pred             EecCcccccccccchhHH--HhhccccceecccccCcccccccccC--CCCCCCCcEEEeecCCCceEeccccccccccc
Q 007371          324 MLKGLEKVSILQENDGTK--MLLQRTEGLWLETLEGVQSVVHELDD--GEGFPRLKHLHVKSCSEILHIVGSVRREEGEL  399 (606)
Q Consensus       324 ~L~~~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~  399 (606)
                      ++++|.+.+....  .+.  ...++|++|++++|.....+|..+..  .+.+++|+.++++++..  .+...  ..    
T Consensus       226 ~l~~~~l~~~~~~--~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~--~~----  295 (520)
T 2z7x_B          226 TLNNIETTWNSFI--RILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQS--YI----  295 (520)
T ss_dssp             EEEEEEEEHHHHH--HHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTH--HH----
T ss_pred             cccccccCHHHHH--HHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchh--hh----
Confidence            5555443221110  111  11357888888888766567765510  03777777777777653  11000  00    


Q ss_pred             cccc--cccch-hhhhhhh---h-hhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccc-hhHH
Q 007371          400 RRWE--GNLNS-TIQKCYE---E-MIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIP-ANLL  471 (606)
Q Consensus       400 ~~~~--~~L~~-~i~~~~~---~-~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~-~~~~  471 (606)
                      ...+  ++|+. .+..+..   . ...+++|+.|++.++.--..++    ..++.+++|++|++++| +++.+.. ...+
T Consensus       296 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~  370 (520)
T 2z7x_B          296 YEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF----ENCGHLTELETLILQMN-QLKELSKIAEMT  370 (520)
T ss_dssp             HHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTT----TTCCCCSSCCEEECCSS-CCCBHHHHHHHH
T ss_pred             hcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhh----hhhccCCCCCEEEccCC-ccCccccchHHH
Confidence            0000  11222 1111110   0 0234555559998875333233    23477899999999995 5776421 1346


Q ss_pred             hhcCCCcEEEEecCCCcce-eeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCC
Q 007371          472 RCLNNLVYLEVRNCDSLEE-VLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDM  550 (606)
Q Consensus       472 ~~l~~L~~L~i~~c~~l~~-l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L  550 (606)
                      ..+++|++|++++|. +.. ++.          .....+++|++|++++|.--..++.   ..  .++|+.|++++| ++
T Consensus       371 ~~l~~L~~L~Ls~N~-l~~~l~~----------~~~~~l~~L~~L~Ls~N~l~~~~~~---~l--~~~L~~L~Ls~N-~l  433 (520)
T 2z7x_B          371 TQMKSLQQLDISQNS-VSYDEKK----------GDCSWTKSLLSLNMSSNILTDTIFR---CL--PPRIKVLDLHSN-KI  433 (520)
T ss_dssp             TTCTTCCEEECCSSC-CBCCGGG----------CSCCCCTTCCEEECCSSCCCGGGGG---SC--CTTCCEEECCSS-CC
T ss_pred             hhCCCCCEEECCCCc-CCccccc----------chhccCccCCEEECcCCCCCcchhh---hh--cccCCEEECCCC-cc
Confidence            789999999999876 444 442          1245689999999999853344433   11  279999999998 57


Q ss_pred             cccccC---CccccccccChhh--------hhhhccccceeeccc
Q 007371          551 ETFISN---STSVLHMTADNKE--------AQKLKSEKNLLVADQ  584 (606)
Q Consensus       551 ~~l~~~---~~~~~~l~~~~~~--------~~~l~~l~~l~i~~~  584 (606)
                      +.+|..   .+.++.+++.+..        +..+++|+.|.+++.
T Consensus       434 ~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence            777743   2333444333322        344556666665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.94  E-value=2.2e-25  Score=234.81  Aligned_cols=326  Identities=19%  Similarity=0.258  Sum_probs=249.6

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA  199 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~  199 (606)
                      .+++++.|.+.++.+..++.  +..+++|++|++++|.++.+|. ++++++|++|++++|.+.....++++++|++|+++
T Consensus        44 ~l~~l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~  120 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  120 (466)
T ss_dssp             HHHTCCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             HhccccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECC
Confidence            56789999999998888876  5789999999999999999877 89999999999999999883339999999999999


Q ss_pred             CCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371          200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       200 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      +|.++.+|. +.++++|++|++++|. ...++.  ++.+++|++|+++++ ....          ..++++++|++|+++
T Consensus       121 ~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~~L~~L~l~~~-~~~~----------~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          121 NNQITDIDP-LKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLSFGNQ-VTDL----------KPLANLTTLERLDIS  185 (466)
T ss_dssp             SSCCCCCGG-GTTCTTCSEEEEEEEE-ECCCGG--GTTCTTCSEEEEEES-CCCC----------GGGTTCTTCCEEECC
T ss_pred             CCCCCCChH-HcCCCCCCEEECCCCc-cCCChh--hccCCcccEeecCCc-ccCc----------hhhccCCCCCEEECc
Confidence            999998876 8999999999999976 445554  899999999998643 2221          348889999999999


Q ss_pred             eCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcc
Q 007371          280 VADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQ  359 (606)
Q Consensus       280 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (606)
                      +|.+..++.                         +..+++|+.|++++|.+.+..+    + ..+++|+.|++++|.. +
T Consensus       186 ~n~l~~~~~-------------------------l~~l~~L~~L~l~~n~l~~~~~----~-~~l~~L~~L~l~~n~l-~  234 (466)
T 1o6v_A          186 SNKVSDISV-------------------------LAKLTNLESLIATNNQISDITP----L-GILTNLDELSLNGNQL-K  234 (466)
T ss_dssp             SSCCCCCGG-------------------------GGGCTTCSEEECCSSCCCCCGG----G-GGCTTCCEEECCSSCC-C
T ss_pred             CCcCCCChh-------------------------hccCCCCCEEEecCCccccccc----c-cccCCCCEEECCCCCc-c
Confidence            888765432                         3556677777777766544322    1 2358889999988753 3


Q ss_pred             cccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccccccccccc
Q 007371          360 SVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWH  439 (606)
Q Consensus       360 ~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  439 (606)
                      .++.    ...+++|++|++++|. +..+.       +  ...+++|+.                 |.+.++. +..+  
T Consensus       235 ~~~~----l~~l~~L~~L~l~~n~-l~~~~-------~--~~~l~~L~~-----------------L~l~~n~-l~~~--  280 (466)
T 1o6v_A          235 DIGT----LASLTNLTDLDLANNQ-ISNLA-------P--LSGLTKLTE-----------------LKLGANQ-ISNI--  280 (466)
T ss_dssp             CCGG----GGGCTTCSEEECCSSC-CCCCG-------G--GTTCTTCSE-----------------EECCSSC-CCCC--
T ss_pred             cchh----hhcCCCCCEEECCCCc-cccch-------h--hhcCCCCCE-----------------EECCCCc-cCcc--
Confidence            3432    3389999999999986 32221       1  344566666                 9998874 3333  


Q ss_pred             CCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecc
Q 007371          440 GQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTD  519 (606)
Q Consensus       440 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  519 (606)
                         .+...+++|+.|++++| +++.+++   +..+++|++|++++|. +..++.            +..+++|++|++++
T Consensus       281 ---~~~~~l~~L~~L~L~~n-~l~~~~~---~~~l~~L~~L~L~~n~-l~~~~~------------~~~l~~L~~L~l~~  340 (466)
T 1o6v_A          281 ---SPLAGLTALTNLELNEN-QLEDISP---ISNLKNLTYLTLYFNN-ISDISP------------VSSLTKLQRLFFYN  340 (466)
T ss_dssp             ---GGGTTCTTCSEEECCSS-CCSCCGG---GGGCTTCSEEECCSSC-CSCCGG------------GGGCTTCCEEECCS
T ss_pred             ---ccccCCCccCeEEcCCC-cccCchh---hcCCCCCCEEECcCCc-CCCchh------------hccCccCCEeECCC
Confidence               23567899999999996 6887744   5789999999999985 555432            34789999999999


Q ss_pred             ccccccccccccccccCCCcceEeeccCCCCcccc
Q 007371          520 LPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFI  554 (606)
Q Consensus       520 c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~  554 (606)
                      | +++.++.    ...+++|+.|++++|+ +..++
T Consensus       341 n-~l~~~~~----l~~l~~L~~L~l~~n~-l~~~~  369 (466)
T 1o6v_A          341 N-KVSDVSS----LANLTNINWLSAGHNQ-ISDLT  369 (466)
T ss_dssp             S-CCCCCGG----GTTCTTCCEEECCSSC-CCBCG
T ss_pred             C-ccCCchh----hccCCCCCEEeCCCCc-cCccc
Confidence            8 6777643    6779999999999985 54443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.94  E-value=8e-26  Score=228.83  Aligned_cols=303  Identities=17%  Similarity=0.212  Sum_probs=160.0

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA  199 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~  199 (606)
                      .+++|++|.+.++....++.  +..+++|++|++++|.++.+|. +..+++|++|++++|.++.++.+.++++|++|+++
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~  118 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLN  118 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECT
T ss_pred             hcccccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECc
Confidence            33444444444444444433  3445555555555555555444 55555555555555555554445555555555555


Q ss_pred             CCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371          200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       200 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      +|.++.+|. +..+++|++|++++|.....++.  ++.+++|++|++++|.+....          .++.+++|++|+++
T Consensus       119 ~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~----------~~~~l~~L~~L~l~  185 (347)
T 4fmz_A          119 EDNISDISP-LANLTKMYSLNLGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVT----------PIANLTDLYSLSLN  185 (347)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCG----------GGGGCTTCSEEECT
T ss_pred             CCcccCchh-hccCCceeEEECCCCCCcccccc--hhhCCCCcEEEecCCCcCCch----------hhccCCCCCEEEcc
Confidence            555555544 55555555555555544444433  555555555555555443332          14555555555555


Q ss_pred             eCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcc
Q 007371          280 VADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQ  359 (606)
Q Consensus       280 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (606)
                      +|.+..++..                         ..+++|+.+++++|.......     ...+++|++|++++|.. .
T Consensus       186 ~n~l~~~~~~-------------------------~~l~~L~~L~l~~n~l~~~~~-----~~~~~~L~~L~l~~n~l-~  234 (347)
T 4fmz_A          186 YNQIEDISPL-------------------------ASLTSLHYFTAYVNQITDITP-----VANMTRLNSLKIGNNKI-T  234 (347)
T ss_dssp             TSCCCCCGGG-------------------------GGCTTCCEEECCSSCCCCCGG-----GGGCTTCCEEECCSSCC-C
T ss_pred             CCcccccccc-------------------------cCCCccceeecccCCCCCCch-----hhcCCcCCEEEccCCcc-C
Confidence            5554443331                         222223333333322211110     01124555555555432 2


Q ss_pred             cccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccccccccccc
Q 007371          360 SVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWH  439 (606)
Q Consensus       360 ~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~  439 (606)
                      .++. +.   .+++|++|++++|. ++.+.       .  ...+++|+.                 |.+.++ .+..++ 
T Consensus       235 ~~~~-~~---~l~~L~~L~l~~n~-l~~~~-------~--~~~l~~L~~-----------------L~l~~n-~l~~~~-  281 (347)
T 4fmz_A          235 DLSP-LA---NLSQLTWLEIGTNQ-ISDIN-------A--VKDLTKLKM-----------------LNVGSN-QISDIS-  281 (347)
T ss_dssp             CCGG-GT---TCTTCCEEECCSSC-CCCCG-------G--GTTCTTCCE-----------------EECCSS-CCCCCG-
T ss_pred             CCcc-hh---cCCCCCEEECCCCc-cCCCh-------h--HhcCCCcCE-----------------EEccCC-ccCCCh-
Confidence            2222 22   56666666666653 22210       0  233444555                 666665 333331 


Q ss_pred             CCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecc
Q 007371          440 GQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTD  519 (606)
Q Consensus       440 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  519 (606)
                          .+..+++|+.|++++| .++...+ ..+..+++|++|++++|+ ++.++.            +..+++|++|++++
T Consensus       282 ----~~~~l~~L~~L~L~~n-~l~~~~~-~~l~~l~~L~~L~L~~n~-l~~~~~------------~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          282 ----VLNNLSQLNSLFLNNN-QLGNEDM-EVIGGLTNLTTLFLSQNH-ITDIRP------------LASLSKMDSADFAN  342 (347)
T ss_dssp             ----GGGGCTTCSEEECCSS-CCCGGGH-HHHHTCTTCSEEECCSSS-CCCCGG------------GGGCTTCSEESSSC
T ss_pred             ----hhcCCCCCCEEECcCC-cCCCcCh-hHhhccccCCEEEccCCc-cccccC------------hhhhhccceeehhh
Confidence                2356788999999986 5666634 456789999999999987 555543            34689999999998


Q ss_pred             cc
Q 007371          520 LP  521 (606)
Q Consensus       520 c~  521 (606)
                      |+
T Consensus       343 N~  344 (347)
T 4fmz_A          343 QV  344 (347)
T ss_dssp             C-
T ss_pred             hc
Confidence            84

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=1.6e-25  Score=245.73  Aligned_cols=152  Identities=23%  Similarity=0.261  Sum_probs=124.4

Q ss_pred             CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l  176 (606)
                      ..+++|++++|.+..++.. . .+++|++|++++|.+..++++.|.++++|++|+|++|.++.+|. .|.++.+|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            4689999999999888764 3 89999999999999999998888999999999999999999765 6899999999999


Q ss_pred             eCCCCCC-C-cccCCCCCCCEeeecCCcCC--cccccccCCCCCCEEecCCCcccccccHHHhhCCCCC----CEEEccC
Q 007371          177 DYCRLKD-I-AIVGQLKKLEILILARSTIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQL----EELYMGN  248 (606)
Q Consensus       177 ~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L----~~L~l~~  248 (606)
                      ++|.++. + ..++++++|++|++++|.++  .+|..++.+++|++|++++|...+..+.. +..+.++    ..++++.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCCEEECTT
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc-ccchhhhhhhhhhhhccc
Confidence            9999988 4 56899999999999999887  45788899999999999997655444433 4444333    2455555


Q ss_pred             CCCC
Q 007371          249 SFSG  252 (606)
Q Consensus       249 ~~~~  252 (606)
                      +.+.
T Consensus       211 n~l~  214 (635)
T 4g8a_A          211 NPMN  214 (635)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            5443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.94  E-value=1.2e-25  Score=242.73  Aligned_cols=386  Identities=14%  Similarity=0.110  Sum_probs=229.3

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEe
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEIL  196 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L  196 (606)
                      .+...++++++++.+..+|..+   .++|++|++++|.++.++ ..++++++|++|++++|.++.  |..++++++|++|
T Consensus        29 ~~~~~~~l~ls~~~L~~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  105 (562)
T 3a79_B           29 SNELESMVDYSNRNLTHVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL  105 (562)
T ss_dssp             ----CCEEECTTSCCCSCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             ccCCCcEEEcCCCCCccCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence            4556689999999999999876   389999999999999965 689999999999999999988  6789999999999


Q ss_pred             eecCCcCCcccccccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCE
Q 007371          197 ILARSTIKQLPLEIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLAT  275 (606)
Q Consensus       197 ~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~  275 (606)
                      ++++|.++.+|..  .+++|++|++++|...+ .+|.. ++++++|++|++++|.+....        +..+.++ +|++
T Consensus       106 ~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~-~~~l~~L~~L~L~~n~l~~~~--------~~~l~~L-~L~~  173 (562)
T 3a79_B          106 DVSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKE-FGNLTKLTFLGLSAAKFRQLD--------LLPVAHL-HLSC  173 (562)
T ss_dssp             ECTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGG-GGGCTTCCEEEEECSBCCTTT--------TGGGTTS-CEEE
T ss_pred             ECCCCcCCccCcc--ccccCCEEECCCCCccccCchHh-hcccCcccEEecCCCccccCc--------hhhhhhc-eeeE
Confidence            9999999999987  89999999999987554 34455 999999999999999875432        1334444 4499


Q ss_pred             EEEeeCCC--C-CCCccccccCCcEEEEEeCCCCC--CCCCCcccCCCCCcEEEecCcc---------------------
Q 007371          276 LEIEVADA--E-ILPPNFVSVELQRYRIRIGDESE--DEFDPLLVKSEAPRLMMLKGLE---------------------  329 (606)
Q Consensus       276 L~l~~~~~--~-~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~l~~~~~L~~L~L~~~~---------------------  329 (606)
                      |++++|.+  . ..|..+..-..+.+.+.......  ......+..+++|+.+++++|.                     
T Consensus       174 L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~  253 (562)
T 3a79_B          174 ILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLN  253 (562)
T ss_dssp             EEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEE
T ss_pred             EEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceE
Confidence            99999987  3 33444332222333332222111  1111223344555555555542                     


Q ss_pred             -------cccccc--cchhHHHhhccccceecccccCcccccccccCC--CCCCC-------------------------
Q 007371          330 -------KVSILQ--ENDGTKMLLQRTEGLWLETLEGVQSVVHELDDG--EGFPR-------------------------  373 (606)
Q Consensus       330 -------~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~--~~l~~-------------------------  373 (606)
                             ..+...  .+.+  ...++|++|++++|.....+|..+...  ..++.                         
T Consensus       254 L~L~~~~l~~~~~~~~~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~  331 (562)
T 3a79_B          254 VTLQHIETTWKCSVKLFQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEM  331 (562)
T ss_dssp             EEEEEEEECHHHHHHHHHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTC
T ss_pred             EEecCCcCcHHHHHHHHHh--hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccC
Confidence                   111000  0000  012377777777776554555543100  12222                         


Q ss_pred             -CcEEEeecCCCceEeccccccccccccccccccch-hhhh------hhhhhhccccccceeccccccccccccCCCCCc
Q 007371          374 -LKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNS-TIQK------CYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPV  445 (606)
Q Consensus       374 -L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~-~i~~------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~  445 (606)
                       |++|+++++.-....          ....+++|+. .+..      .+..+..+++|+.|.+.++ .+..++... ..+
T Consensus       332 ~L~~L~l~~n~~~~~~----------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~-~~~  399 (562)
T 3a79_B          332 NIKMLSISDTPFIHMV----------CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN-GLKNFFKVA-LMT  399 (562)
T ss_dssp             CCSEEEEESSCCCCCC----------CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSS-CCCBTTHHH-HTT
T ss_pred             cceEEEccCCCccccc----------CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCC-CcCCcccch-hhh
Confidence             333333333211000          0134455555 1111      1222333444555666654 233222111 123


Q ss_pred             cccCCccEEEeccCCCccc-ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCC-CccceEeecccccc
Q 007371          446 SFFNNLFDLVVDDCTNMSS-AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLF-PKLFKLRLTDLPKL  523 (606)
Q Consensus       446 ~~l~~L~~L~i~~C~~L~~-l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~c~~L  523 (606)
                      +.+++|++|+++++ +++. + |...+..+++|++|++++|.--..++              ..+ ++|+.|++++| ++
T Consensus       400 ~~l~~L~~L~l~~N-~l~~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~--------------~~l~~~L~~L~L~~N-~l  462 (562)
T 3a79_B          400 KNMSSLETLDVSLN-SLNSHA-YDRTCAWAESILVLNLSSNMLTGSVF--------------RCLPPKVKVLDLHNN-RI  462 (562)
T ss_dssp             TTCTTCCEEECTTS-CCBSCC-SSCCCCCCTTCCEEECCSSCCCGGGG--------------SSCCTTCSEEECCSS-CC
T ss_pred             cCCCCCCEEECCCC-cCCCcc-ChhhhcCcccCCEEECCCCCCCcchh--------------hhhcCcCCEEECCCC-cC
Confidence            45566666666663 3444 3 33334456666666666654211111              123 57888888777 67


Q ss_pred             ccccccccccccCCCcceEeeccCCCCccccc
Q 007371          524 KRFCNFTRNIIELPKLRYLTIENCPDMETFIS  555 (606)
Q Consensus       524 ~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~  555 (606)
                      +.+|.   ....+++|+.|+++++ +++.+|.
T Consensus       463 ~~ip~---~~~~l~~L~~L~L~~N-~l~~l~~  490 (562)
T 3a79_B          463 MSIPK---DVTHLQALQELNVASN-QLKSVPD  490 (562)
T ss_dssp             CCCCT---TTTSSCCCSEEECCSS-CCCCCCT
T ss_pred             cccCh---hhcCCCCCCEEECCCC-CCCCCCH
Confidence            77765   4557788888888776 4777664

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.94  E-value=4.4e-26  Score=239.73  Aligned_cols=360  Identities=18%  Similarity=0.146  Sum_probs=245.6

Q ss_pred             CCCeEEEecCCCCccc-CCcc-cccccceeeccccccc-ccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEE
Q 007371          100 KDPIAISLTYGGIQVL-PERL-QCPCLELLHTEGDGSM-QVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLC  175 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l-~~~~-~l~~L~~L~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~  175 (606)
                      +.+++|++++|.+..+ +... .+++|++|+++++... .++...|.++++|++|++++|.+.. .|..++++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            6789999999999776 4444 8999999999998765 6766667999999999999999988 588999999999999


Q ss_pred             eeCCCCCC--Ccc--cCCCCCCCEeeecCCcCCcc-ccc-ccCCCCCCEEecCCCcccccccHHHhhCC--CCCCEEEcc
Q 007371          176 LDYCRLKD--IAI--VGQLKKLEILILARSTIKQL-PLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKL--SQLEELYMG  247 (606)
Q Consensus       176 l~~~~~~~--~~~--i~~l~~L~~L~l~~~~l~~l-p~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l--~~L~~L~l~  247 (606)
                      +++|.+++  +..  ++++++|++|++++|.++.+ |.. ++++++|++|++++|...+..+.. +..+  .+|+.|+++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~~~L~~L~l~  188 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEED-LLNFQGKHFTLLRLS  188 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTT-SGGGTTCEEEEEECT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhh-hhccccccccccccc
Confidence            99999987  443  99999999999999999977 544 889999999999998876666655 6665  689999999


Q ss_pred             CCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCC-CCcccc----ccCCcEEEEEeCCCCCCCCCCcccCCCCCcE
Q 007371          248 NSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEI-LPPNFV----SVELQRYRIRIGDESEDEFDPLLVKSEAPRL  322 (606)
Q Consensus       248 ~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~  322 (606)
                      ++.+.......-.......+..+++|++|++++|.+.. .|..+.    ..+|+.|.+.........+  .......+. 
T Consensus       189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~-  265 (455)
T 3v47_A          189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--GHTNFKDPD-  265 (455)
T ss_dssp             TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--TCCSSCCCC-
T ss_pred             cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecccccccccc--chhhhccCc-
Confidence            99887665422111222234566889999999998753 333322    1567777663221111100  000000000 


Q ss_pred             EEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEecccccccccccccc
Q 007371          323 MMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRW  402 (606)
Q Consensus       323 L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~  402 (606)
                                   .........++|+.|++++|......+..+.   .+++|++|++++|. ++.+.       +.....
T Consensus       266 -------------~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~Ls~n~-l~~~~-------~~~~~~  321 (455)
T 3v47_A          266 -------------NFTFKGLEASGVKTCDLSKSKIFALLKSVFS---HFTDLEQLTLAQNE-INKID-------DNAFWG  321 (455)
T ss_dssp             -------------TTTTGGGTTSCCCEEECCSSCCCEECTTTTT---TCTTCCEEECTTSC-CCEEC-------TTTTTT
T ss_pred             -------------ccccccccccCceEEEecCccccccchhhcc---cCCCCCEEECCCCc-ccccC-------hhHhcC
Confidence                         0000000125677777777766555555554   77788888887775 33221       000233


Q ss_pred             ccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEE
Q 007371          403 EGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEV  482 (606)
Q Consensus       403 ~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i  482 (606)
                      +++|+.                 |++.++. +..+..   ..++.+++|++|+++++ +++.+.|. .+..+++|++|++
T Consensus       322 l~~L~~-----------------L~Ls~N~-l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L  378 (455)
T 3v47_A          322 LTHLLK-----------------LNLSQNF-LGSIDS---RMFENLDKLEVLDLSYN-HIRALGDQ-SFLGLPNLKELAL  378 (455)
T ss_dssp             CTTCCE-----------------EECCSSC-CCEECG---GGGTTCTTCCEEECCSS-CCCEECTT-TTTTCTTCCEEEC
T ss_pred             cccCCE-----------------EECCCCc-cCCcCh---hHhcCcccCCEEECCCC-cccccChh-hccccccccEEEC
Confidence            455555                 7777763 333321   12456788888888885 67777453 3567888999999


Q ss_pred             ecCCCcceeeccccccccccCCCCCCCCccceEeecccc
Q 007371          483 RNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLP  521 (606)
Q Consensus       483 ~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  521 (606)
                      +++. ++.++.          ..+..+++|++|++++++
T Consensus       379 ~~N~-l~~~~~----------~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          379 DTNQ-LKSVPD----------GIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CSSC-CSCCCT----------TTTTTCTTCCEEECCSSC
T ss_pred             CCCc-cccCCH----------hHhccCCcccEEEccCCC
Confidence            8854 665543          234568889999988774

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.94  E-value=8.9e-25  Score=224.75  Aligned_cols=306  Identities=13%  Similarity=0.107  Sum_probs=211.3

Q ss_pred             cccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCC
Q 007371          118 RLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLE  194 (606)
Q Consensus       118 ~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~  194 (606)
                      ...+++++.|.+.++.+..+|..+|..+++|++|++++|.++.++ ..++.+++|++|++++|.+..  |..++++++|+
T Consensus        41 ~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  120 (390)
T 3o6n_A           41 DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  120 (390)
T ss_dssp             SGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             ccccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence            346788899999988888899888888999999999999988854 478899999999999999887  46688999999


Q ss_pred             EeeecCCcCCcccccc-cCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCC
Q 007371          195 ILILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKL  273 (606)
Q Consensus       195 ~L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L  273 (606)
                      +|++++|.++.+|..+ +++++|++|++++|...+..|.. ++.+++|++|++++|.+....           ++.+++|
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~-----------~~~l~~L  188 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVD-----------LSLIPSL  188 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TSSCTTCCEEECCSSCCSBCC-----------GGGCTTC
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhh-ccCCCCCCEEECCCCcCCccc-----------ccccccc
Confidence            9999999999888774 78999999999987655444444 888999999999988776532           5667888


Q ss_pred             CEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecc
Q 007371          274 ATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLE  353 (606)
Q Consensus       274 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~  353 (606)
                      +.|++++|.+..++.                            .++++.|++++|.+... +..     .+++|+.|+++
T Consensus       189 ~~L~l~~n~l~~~~~----------------------------~~~L~~L~l~~n~l~~~-~~~-----~~~~L~~L~l~  234 (390)
T 3o6n_A          189 FHANVSYNLLSTLAI----------------------------PIAVEELDASHNSINVV-RGP-----VNVELTILKLQ  234 (390)
T ss_dssp             SEEECCSSCCSEEEC----------------------------CSSCSEEECCSSCCCEE-ECC-----CCSSCCEEECC
T ss_pred             ceeecccccccccCC----------------------------CCcceEEECCCCeeeec-ccc-----ccccccEEECC
Confidence            899888876653321                            12344555555444221 111     12566666666


Q ss_pred             cccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccccc
Q 007371          354 TLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPR  433 (606)
Q Consensus       354 ~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~  433 (606)
                      +|.... .+ .+   +.+++|++|++++|. ++.+.       +.....+++|+.                 |.+.++ .
T Consensus       235 ~n~l~~-~~-~l---~~l~~L~~L~Ls~n~-l~~~~-------~~~~~~l~~L~~-----------------L~L~~n-~  283 (390)
T 3o6n_A          235 HNNLTD-TA-WL---LNYPGLVEVDLSYNE-LEKIM-------YHPFVKMQRLER-----------------LYISNN-R  283 (390)
T ss_dssp             SSCCCC-CG-GG---GGCTTCSEEECCSSC-CCEEE-------SGGGTTCSSCCE-----------------EECCSS-C
T ss_pred             CCCCcc-cH-HH---cCCCCccEEECCCCc-CCCcC-------hhHccccccCCE-----------------EECCCC-c
Confidence            654332 22 23   266777777777764 32221       000233445555                 776664 3


Q ss_pred             ccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccc
Q 007371          434 LKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLF  513 (606)
Q Consensus       434 l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~  513 (606)
                      +..++..    ...+++|++|++++| +++.+ |.. +..+++|++|++++|. ++.++             ...+++|+
T Consensus       284 l~~~~~~----~~~l~~L~~L~L~~n-~l~~~-~~~-~~~l~~L~~L~L~~N~-i~~~~-------------~~~~~~L~  342 (390)
T 3o6n_A          284 LVALNLY----GQPIPTLKVLDLSHN-HLLHV-ERN-QPQFDRLENLYLDHNS-IVTLK-------------LSTHHTLK  342 (390)
T ss_dssp             CCEEECS----SSCCTTCCEEECCSS-CCCCC-GGG-HHHHTTCSEEECCSSC-CCCCC-------------CCTTCCCS
T ss_pred             CcccCcc----cCCCCCCCEEECCCC-cceec-Ccc-ccccCcCCEEECCCCc-cceeC-------------chhhccCC
Confidence            4444322    256788888888886 67776 433 4678888888888876 55442             24678888


Q ss_pred             eEeecccc
Q 007371          514 KLRLTDLP  521 (606)
Q Consensus       514 ~L~l~~c~  521 (606)
                      +|++++++
T Consensus       343 ~L~l~~N~  350 (390)
T 3o6n_A          343 NLTLSHND  350 (390)
T ss_dssp             EEECCSSC
T ss_pred             EEEcCCCC
Confidence            88888764

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=2.2e-25  Score=232.88  Aligned_cols=261  Identities=15%  Similarity=0.102  Sum_probs=167.9

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      +.+++|++++|.+..+|....+++|++|++++|.+..++   +..+++|++|++++|.++.+|  ++++++|++|++++|
T Consensus        42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSS
T ss_pred             CCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCC
Confidence            777888888887776765447777777777777776665   466777777777777777764  677777777777777


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .++..+ ++++++|++|++++|.++.+|  ++.+++|++|++++|...+.++   ++.+++|++|++++|.+...+    
T Consensus       117 ~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l~----  186 (457)
T 3bz5_A          117 KLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITELD----  186 (457)
T ss_dssp             CCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCCC----
T ss_pred             cCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCccceec----
Confidence            776632 677777777777777777664  6677777777777776666663   567777777777777665431    


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchh
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG  339 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~  339 (606)
                             ++.+++|+.|++++|.+..++                          +..+++|+.|++++|.+.+ ++    
T Consensus       187 -------l~~l~~L~~L~l~~N~l~~~~--------------------------l~~l~~L~~L~Ls~N~l~~-ip----  228 (457)
T 3bz5_A          187 -------VSQNKLLNRLNCDTNNITKLD--------------------------LNQNIQLTFLDCSSNKLTE-ID----  228 (457)
T ss_dssp             -------CTTCTTCCEEECCSSCCSCCC--------------------------CTTCTTCSEEECCSSCCSC-CC----
T ss_pred             -------cccCCCCCEEECcCCcCCeec--------------------------cccCCCCCEEECcCCcccc-cC----
Confidence                   456667777777766655331                          3455666666666665543 22    


Q ss_pred             HHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhc
Q 007371          340 TKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIG  419 (606)
Q Consensus       340 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~  419 (606)
                      +. .+++|+.|++++|.... ++     .+.+++|+.|.++++                      +|+.           
T Consensus       229 ~~-~l~~L~~L~l~~N~l~~-~~-----~~~l~~L~~L~l~~n----------------------~L~~-----------  268 (457)
T 3bz5_A          229 VT-PLTQLTYFDCSVNPLTE-LD-----VSTLSKLTTLHCIQT----------------------DLLE-----------  268 (457)
T ss_dssp             CT-TCTTCSEEECCSSCCSC-CC-----CTTCTTCCEEECTTC----------------------CCSC-----------
T ss_pred             cc-ccCCCCEEEeeCCcCCC-cC-----HHHCCCCCEEeccCC----------------------CCCE-----------
Confidence            11 23566666666653322 22     225566666655432                      2233           


Q ss_pred             cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccc
Q 007371          420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSA  465 (606)
Q Consensus       420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l  465 (606)
                            |++.++..+..++      .+.+++|+.|++++|+.+..+
T Consensus       269 ------L~l~~n~~~~~~~------~~~l~~L~~L~Ls~n~~l~~l  302 (457)
T 3bz5_A          269 ------IDLTHNTQLIYFQ------AEGCRKIKELDVTHNTQLYLL  302 (457)
T ss_dssp             ------CCCTTCTTCCEEE------CTTCTTCCCCCCTTCTTCCEE
T ss_pred             ------EECCCCccCCccc------ccccccCCEEECCCCccccee
Confidence                  6666666554443      245677777777777666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=3.3e-25  Score=231.35  Aligned_cols=298  Identities=20%  Similarity=0.150  Sum_probs=153.6

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIK  204 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~  204 (606)
                      ++|+++++....+|.    ..++|++|++++|.++.+|..   +.+|++|++++|.++..+.+  .++|++|++++|.++
T Consensus        74 ~~L~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           74 HELELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQLE  144 (454)
T ss_dssp             SEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSC--CTTCCEEECCSSCCS
T ss_pred             CEEEecCCccccCCC----CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCC--CCCCCEEECcCCCCC
Confidence            444444444444433    124455555555555554432   24555555555554441111  145666666666555


Q ss_pred             cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          205 QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       205 ~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      .+| .++++++|++|++++|... .+|..    ..+|++|++++|.+...          ..++++++|++|++++|.+.
T Consensus       145 ~lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~l----------~~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          145 KLP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEEL----------PELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             SCC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSSC----------CCCTTCTTCCEEECCSSCCS
T ss_pred             CCc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCcC----------ccccCCCCCCEEECCCCcCC
Confidence            555 3556666666666655432 34432    23566666666555432          13566666666666666666


Q ss_pred             CCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCccccccc
Q 007371          285 ILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHE  364 (606)
Q Consensus       285 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~  364 (606)
                      .+|...  .+|+.|++..+. .. .++ .+..+++|+.|++++|.+.+ ++.      .+++|+.|++++|. ...+|. 
T Consensus       209 ~l~~~~--~~L~~L~l~~n~-l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~------~~~~L~~L~l~~N~-l~~l~~-  274 (454)
T 1jl5_A          209 KLPDLP--LSLESIVAGNNI-LE-ELP-ELQNLPFLTTIYADNNLLKT-LPD------LPPSLEALNVRDNY-LTDLPE-  274 (454)
T ss_dssp             SCCCCC--TTCCEEECCSSC-CS-SCC-CCTTCTTCCEEECCSSCCSS-CCS------CCTTCCEEECCSSC-CSCCCC-
T ss_pred             cCCCCc--CcccEEECcCCc-CC-ccc-ccCCCCCCCEEECCCCcCCc-ccc------cccccCEEECCCCc-ccccCc-
Confidence            555432  466666663322 22 233 35666666777776665533 211      12566666666654 233433 


Q ss_pred             ccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCC
Q 007371          365 LDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALP  444 (606)
Q Consensus       365 l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  444 (606)
                           .+++|++|++++|. ++.+           +...++|+.                 |++.++. +..++.     
T Consensus       275 -----~~~~L~~L~ls~N~-l~~l-----------~~~~~~L~~-----------------L~l~~N~-l~~i~~-----  314 (454)
T 1jl5_A          275 -----LPQSLTFLDVSENI-FSGL-----------SELPPNLYY-----------------LNASSNE-IRSLCD-----  314 (454)
T ss_dssp             -----CCTTCCEEECCSSC-CSEE-----------SCCCTTCCE-----------------EECCSSC-CSEECC-----
T ss_pred             -----ccCcCCEEECcCCc-cCcc-----------cCcCCcCCE-----------------EECcCCc-CCcccC-----
Confidence                 23566677766664 3322           222245555                 6666542 222211     


Q ss_pred             ccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccc
Q 007371          445 VSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLK  524 (606)
Q Consensus       445 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~  524 (606)
                        ..++|++|++++ ++++.+ |.    .+++|++|++++|. ++.++.              .+++|++|+++++ .++
T Consensus       315 --~~~~L~~L~Ls~-N~l~~l-p~----~~~~L~~L~L~~N~-l~~lp~--------------~l~~L~~L~L~~N-~l~  370 (454)
T 1jl5_A          315 --LPPSLEELNVSN-NKLIEL-PA----LPPRLERLIASFNH-LAEVPE--------------LPQNLKQLHVEYN-PLR  370 (454)
T ss_dssp             --CCTTCCEEECCS-SCCSCC-CC----CCTTCCEEECCSSC-CSCCCC--------------CCTTCCEEECCSS-CCS
T ss_pred             --CcCcCCEEECCC-Cccccc-cc----cCCcCCEEECCCCc-cccccc--------------hhhhccEEECCCC-CCC
Confidence              114677777777 356665 32    24677777777653 554432              3567777777766 444


Q ss_pred             c
Q 007371          525 R  525 (606)
Q Consensus       525 ~  525 (606)
                      .
T Consensus       371 ~  371 (454)
T 1jl5_A          371 E  371 (454)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=3.9e-25  Score=233.84  Aligned_cols=313  Identities=18%  Similarity=0.170  Sum_probs=175.7

Q ss_pred             eeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCc
Q 007371          126 LLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARST  202 (606)
Q Consensus       126 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~  202 (606)
                      .++..++....+|..+   .+++++|++++|.++.+ |..|.++++|++|++++|.++.  |..+.++++|++|++++|.
T Consensus        15 ~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            3444444455555433   34555666666655553 3455556666666666665555  4555566666666666665


Q ss_pred             CCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371          203 IKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA  281 (606)
Q Consensus       203 l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  281 (606)
                      ++.+|.. +.++++|++|++++|......+.. +.++++|++|++++|.+....+        ..++.+++|++|++++|
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~~n  162 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYM-FQDLYNLKSLEVGDNDLVYISH--------RAFSGLNSLEQLTLEKC  162 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEEECCTTCCEECT--------TSSTTCTTCCEEEEESC
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhH-ccccccCCEEECCCCccceeCh--------hhccCCCCCCEEECCCC
Confidence            5555543 455566666666655443333333 5556666666666555544433        34555556666666655


Q ss_pred             CCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371          282 DAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV  361 (606)
Q Consensus       282 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  361 (606)
                      .+..++...                       +..+++|+.|++++|.+.....  ..+ ..+++|+.|++++|.....+
T Consensus       163 ~l~~~~~~~-----------------------l~~l~~L~~L~l~~n~i~~~~~--~~~-~~l~~L~~L~l~~~~~~~~~  216 (477)
T 2id5_A          163 NLTSIPTEA-----------------------LSHLHGLIVLRLRHLNINAIRD--YSF-KRLYRLKVLEISHWPYLDTM  216 (477)
T ss_dssp             CCSSCCHHH-----------------------HTTCTTCCEEEEESCCCCEECT--TCS-CSCTTCCEEEEECCTTCCEE
T ss_pred             cCcccChhH-----------------------hcccCCCcEEeCCCCcCcEeCh--hhc-ccCcccceeeCCCCcccccc
Confidence            554444321                       1222333333333333221110  001 11367888888888777777


Q ss_pred             cccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCC
Q 007371          362 VHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQ  441 (606)
Q Consensus       362 ~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~  441 (606)
                      +....   ...+|++|++++|. ++.+..       .....+++|+.                 |++.++. +..++.. 
T Consensus       217 ~~~~~---~~~~L~~L~l~~n~-l~~~~~-------~~~~~l~~L~~-----------------L~Ls~n~-l~~~~~~-  266 (477)
T 2id5_A          217 TPNCL---YGLNLTSLSITHCN-LTAVPY-------LAVRHLVYLRF-----------------LNLSYNP-ISTIEGS-  266 (477)
T ss_dssp             CTTTT---TTCCCSEEEEESSC-CCSCCH-------HHHTTCTTCCE-----------------EECCSSC-CCEECTT-
T ss_pred             Ccccc---cCccccEEECcCCc-ccccCH-------HHhcCccccCe-----------------eECCCCc-CCccChh-
Confidence            76554   45689999998884 333210       00234555555                 8888764 4444322 


Q ss_pred             CCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecccc
Q 007371          442 ALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLP  521 (606)
Q Consensus       442 ~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  521 (606)
                        .+..+++|+.|++.++ +++.+.+. .+..+++|++|+++++. ++.++.          ..+..+++|++|++.++|
T Consensus       267 --~~~~l~~L~~L~L~~n-~l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~----------~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          267 --MLHELLRLQEIQLVGG-QLAVVEPY-AFRGLNYLRVLNVSGNQ-LTTLEE----------SVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             --SCTTCTTCCEEECCSS-CCSEECTT-TBTTCTTCCEEECCSSC-CSCCCG----------GGBSCGGGCCEEECCSSC
T ss_pred             --hccccccCCEEECCCC-ccceECHH-HhcCcccCCEEECCCCc-CceeCH----------hHcCCCcccCEEEccCCC
Confidence              2467788888888884 67777443 34678888888888864 665543          133467888888888775

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=1.8e-24  Score=237.35  Aligned_cols=151  Identities=18%  Similarity=0.204  Sum_probs=128.8

Q ss_pred             EEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCC
Q 007371          104 AISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLK  182 (606)
Q Consensus       104 ~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~  182 (606)
                      ..+-++.++..+|..+. +++++|++++|.+..++...|.++++|++|++++|.++.+|. .|+++++|++|++++|+++
T Consensus        35 ~~~c~~~~l~~vP~~lp-~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~  113 (635)
T 4g8a_A           35 TYQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ  113 (635)
T ss_dssp             EEECTTSCCSSCCSSSC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             EEECCCCCcCccCCCCC-cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC
Confidence            34445556677776442 379999999999999998888999999999999999999654 6899999999999999999


Q ss_pred             C-C-cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371          183 D-I-AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKV  256 (606)
Q Consensus       183 ~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~  256 (606)
                      . | ..+.++++|++|++++|+++.+|. .++++++|++|++++|.... ..|.. ++.+++|++|++++|.+....+
T Consensus       114 ~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~  190 (635)
T 4g8a_A          114 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC  190 (635)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG
T ss_pred             CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchh-hccchhhhhhcccCcccccccc
Confidence            8 4 678999999999999999998876 48999999999999987644 35655 8999999999999998876654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=3.3e-24  Score=232.71  Aligned_cols=305  Identities=13%  Similarity=0.106  Sum_probs=204.7

Q ss_pred             ccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCE
Q 007371          119 LQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEI  195 (606)
Q Consensus       119 ~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~  195 (606)
                      ..+.+++.+.+.++.+..+|..+|..+++|++|++++|.++.+| ..++.+++|++|++++|.++.  |..++++++|++
T Consensus        48 l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            35678888888888888888888888999999999999888844 488889999999999998887  456788999999


Q ss_pred             eeecCCcCCcccccc-cCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCC
Q 007371          196 LILARSTIKQLPLEI-GQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLA  274 (606)
Q Consensus       196 L~l~~~~l~~lp~~i-~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~  274 (606)
                      |++++|.++.+|..+ +++++|++|++++|...+..|.. ++.+++|++|++++|.+....           ++.+++|+
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~-----------~~~l~~L~  195 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-FQATTSLQNLQLSSNRLTHVD-----------LSLIPSLF  195 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-TTTCTTCCEEECTTSCCSBCC-----------GGGCTTCS
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-hhcCCcCcEEECcCCCCCCcC-----------hhhhhhhh
Confidence            999999888888764 78899999999987765555544 888999999999888776542           45677888


Q ss_pred             EEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceeccc
Q 007371          275 TLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLET  354 (606)
Q Consensus       275 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  354 (606)
                      .|++++|.+..++.                            ..+|+.|++++|.+... +..     .+++|+.|++++
T Consensus       196 ~L~l~~n~l~~l~~----------------------------~~~L~~L~ls~n~l~~~-~~~-----~~~~L~~L~L~~  241 (597)
T 3oja_B          196 HANVSYNLLSTLAI----------------------------PIAVEELDASHNSINVV-RGP-----VNVELTILKLQH  241 (597)
T ss_dssp             EEECCSSCCSEEEC----------------------------CTTCSEEECCSSCCCEE-ECS-----CCSCCCEEECCS
T ss_pred             hhhcccCccccccC----------------------------CchhheeeccCCccccc-ccc-----cCCCCCEEECCC
Confidence            88888876653321                            12344444444433211 110     124556666655


Q ss_pred             ccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccc
Q 007371          355 LEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRL  434 (606)
Q Consensus       355 ~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l  434 (606)
                      |.... . ..+.   .+++|++|++++|. +..+.       +.....+++|+.                 |.+.++ .+
T Consensus       242 n~l~~-~-~~l~---~l~~L~~L~Ls~N~-l~~~~-------~~~~~~l~~L~~-----------------L~Ls~N-~l  290 (597)
T 3oja_B          242 NNLTD-T-AWLL---NYPGLVEVDLSYNE-LEKIM-------YHPFVKMQRLER-----------------LYISNN-RL  290 (597)
T ss_dssp             SCCCC-C-GGGG---GCTTCSEEECCSSC-CCEEE-------SGGGTTCSSCCE-----------------EECTTS-CC
T ss_pred             CCCCC-C-hhhc---cCCCCCEEECCCCc-cCCCC-------HHHhcCccCCCE-----------------EECCCC-CC
Confidence            53322 1 2222   56666666666654 22221       000233444444                 666654 33


Q ss_pred             cccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccce
Q 007371          435 KEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFK  514 (606)
Q Consensus       435 ~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~  514 (606)
                      ..++..    ...+++|+.|++++| .+..+ |.. +..+++|++|++++|. +..++             ...+++|+.
T Consensus       291 ~~l~~~----~~~l~~L~~L~Ls~N-~l~~i-~~~-~~~l~~L~~L~L~~N~-l~~~~-------------~~~~~~L~~  349 (597)
T 3oja_B          291 VALNLY----GQPIPTLKVLDLSHN-HLLHV-ERN-QPQFDRLENLYLDHNS-IVTLK-------------LSTHHTLKN  349 (597)
T ss_dssp             CEEECS----SSCCTTCCEEECCSS-CCCCC-GGG-HHHHTTCSEEECCSSC-CCCCC-------------CCTTCCCSE
T ss_pred             CCCCcc----cccCCCCcEEECCCC-CCCcc-Ccc-cccCCCCCEEECCCCC-CCCcC-------------hhhcCCCCE
Confidence            434322    255778888888885 56666 433 4678888888888876 44432             346788888


Q ss_pred             Eeecccc
Q 007371          515 LRLTDLP  521 (606)
Q Consensus       515 L~l~~c~  521 (606)
                      |+++++|
T Consensus       350 L~l~~N~  356 (597)
T 3oja_B          350 LTLSHND  356 (597)
T ss_dssp             EECCSSC
T ss_pred             EEeeCCC
Confidence            8888775

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.93  E-value=4.6e-24  Score=225.60  Aligned_cols=263  Identities=18%  Similarity=0.102  Sum_probs=180.4

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~  181 (606)
                      +.++.+++.+..+|... .+++++|++++|.+..++...|.++++|++|++++|.++. .|..++++++|++|++++|.+
T Consensus        14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l   92 (477)
T 2id5_A           14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL   92 (477)
T ss_dssp             TEEECCSCCCSSCCSCC-CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCcCcCCCCC-CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC
Confidence            46777777888887654 3588999999999888877777899999999999999988 477899999999999999998


Q ss_pred             CC-C-cccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371          182 KD-I-AIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG  258 (606)
Q Consensus       182 ~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~  258 (606)
                      +. | ..+.++++|++|++++|.+..+ |..+.++++|++|++++|......+.. ++.+++|++|++++|.+...+.  
T Consensus        93 ~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--  169 (477)
T 2id5_A           93 KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA-FSGLNSLEQLTLEKCNLTSIPT--  169 (477)
T ss_dssp             CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTS-STTCTTCCEEEEESCCCSSCCH--
T ss_pred             CccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhh-ccCCCCCCEEECCCCcCcccCh--
Confidence            88 4 5678999999999999988865 567889999999999997655544544 8899999999999998877664  


Q ss_pred             CCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccccc
Q 007371          259 GSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQE  336 (606)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~  336 (606)
                            ..+.++++|+.|++.+|.+..++....  .++|+.|++..... ...++.......+|+.|++++|.+.. +  
T Consensus       170 ------~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~n~l~~-~--  239 (477)
T 2id5_A          170 ------EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPY-LDTMTPNCLYGLNLTSLSITHCNLTA-V--  239 (477)
T ss_dssp             ------HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTT-CCEECTTTTTTCCCSEEEEESSCCCS-C--
T ss_pred             ------hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCcc-ccccCcccccCccccEEECcCCcccc-c--
Confidence                  678899999999999988876654321  15666666633221 11222222233355555555544421 1  


Q ss_pred             chhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecC
Q 007371          337 NDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSC  382 (606)
Q Consensus       337 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c  382 (606)
                      +......+++|+.|++++|......+..+.   .+++|++|++++|
T Consensus       240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n  282 (477)
T 2id5_A          240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLH---ELLRLQEIQLVGG  282 (477)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCEECTTSCT---TCTTCCEEECCSS
T ss_pred             CHHHhcCccccCeeECCCCcCCccChhhcc---ccccCCEEECCCC
Confidence            111112234555555555432222222222   4555555555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.92  E-value=3.2e-24  Score=220.62  Aligned_cols=300  Identities=16%  Similarity=0.135  Sum_probs=229.9

Q ss_pred             CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l  176 (606)
                      ..+++++++++.+..+|...  .+++|++|+++++.+..++...|..+++|++|++++|.+..+ |..++++++|++|++
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  124 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  124 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence            78999999999999999864  799999999999999988887789999999999999999985 556899999999999


Q ss_pred             eCCCCCC-Ccc-cCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371          177 DYCRLKD-IAI-VGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       177 ~~~~~~~-~~~-i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      ++|.++. |.. ++++++|++|++++|.++.++ ..++.+++|++|++++|... .++   ++.+++|++|++++|.+..
T Consensus       125 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~n~l~~  200 (390)
T 3o6n_A          125 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLST  200 (390)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCSSCCSE
T ss_pred             CCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeecccccccc
Confidence            9999998 544 689999999999999999775 45899999999999997644 444   6789999999999987643


Q ss_pred             ccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371          254 EKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI  333 (606)
Q Consensus       254 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~  333 (606)
                                   +....+|++|++++|.+..+|...                          .++|+.|++++|.+.+.
T Consensus       201 -------------~~~~~~L~~L~l~~n~l~~~~~~~--------------------------~~~L~~L~l~~n~l~~~  241 (390)
T 3o6n_A          201 -------------LAIPIAVEELDASHNSINVVRGPV--------------------------NVELTILKLQHNNLTDT  241 (390)
T ss_dssp             -------------EECCSSCSEEECCSSCCCEEECCC--------------------------CSSCCEEECCSSCCCCC
T ss_pred             -------------cCCCCcceEEECCCCeeeeccccc--------------------------cccccEEECCCCCCccc
Confidence                         344568999999999887654431                          23556666666555332


Q ss_pred             cccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhh
Q 007371          334 LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKC  413 (606)
Q Consensus       334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~  413 (606)
                          .++. .+++|++|++++|......|..+.   .+++|++|++++|. ++.+..        ....+|+|+.     
T Consensus       242 ----~~l~-~l~~L~~L~Ls~n~l~~~~~~~~~---~l~~L~~L~L~~n~-l~~~~~--------~~~~l~~L~~-----  299 (390)
T 3o6n_A          242 ----AWLL-NYPGLVEVDLSYNELEKIMYHPFV---KMQRLERLYISNNR-LVALNL--------YGQPIPTLKV-----  299 (390)
T ss_dssp             ----GGGG-GCTTCSEEECCSSCCCEEESGGGT---TCSSCCEEECCSSC-CCEEEC--------SSSCCTTCCE-----
T ss_pred             ----HHHc-CCCCccEEECCCCcCCCcChhHcc---ccccCCEEECCCCc-CcccCc--------ccCCCCCCCE-----
Confidence                2222 247788888887765554455555   78888888888874 444311        0344667777     


Q ss_pred             hhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCC
Q 007371          414 YEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCD  486 (606)
Q Consensus       414 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~  486 (606)
                                  |++.++ .+..++..    ...+++|++|+++++ .++.+ +   ...+++|++|++++++
T Consensus       300 ------------L~L~~n-~l~~~~~~----~~~l~~L~~L~L~~N-~i~~~-~---~~~~~~L~~L~l~~N~  350 (390)
T 3o6n_A          300 ------------LDLSHN-HLLHVERN----QPQFDRLENLYLDHN-SIVTL-K---LSTHHTLKNLTLSHND  350 (390)
T ss_dssp             ------------EECCSS-CCCCCGGG----HHHHTTCSEEECCSS-CCCCC-C---CCTTCCCSEEECCSSC
T ss_pred             ------------EECCCC-cceecCcc----ccccCcCCEEECCCC-cccee-C---chhhccCCEEEcCCCC
Confidence                        888876 45444422    367789999999985 57776 3   3578899999998865

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.92  E-value=8.4e-24  Score=213.93  Aligned_cols=301  Identities=19%  Similarity=0.156  Sum_probs=227.0

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      +.+++|+++++.+..++....+++|++|++++|.+..++.  +..+++|++|++++|.++.+| .+.++++|++|++++|
T Consensus        44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n  120 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNED  120 (347)
T ss_dssp             TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTS
T ss_pred             ccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCC
Confidence            8899999999999999886699999999999999998887  689999999999999999876 5899999999999999


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .+...+.+..+++|++|++++|.....+..+..+++|++|++++|.. ..++.  ++.+++|++|++++|.+....    
T Consensus       121 ~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~--~~~l~~L~~L~l~~n~l~~~~----  193 (347)
T 4fmz_A          121 NISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKV-KDVTP--IANLTDLYSLSLNYNQIEDIS----  193 (347)
T ss_dssp             CCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECTTSCCCCCG----
T ss_pred             cccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCc-CCchh--hccCCCCCEEEccCCcccccc----
Confidence            99985449999999999999995554445699999999999999764 44444  789999999999999876543    


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchh
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG  339 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~  339 (606)
                            .+..+++|+.|++.+|.+..++..                         ..+++|+.|++++|.+.....    
T Consensus       194 ------~~~~l~~L~~L~l~~n~l~~~~~~-------------------------~~~~~L~~L~l~~n~l~~~~~----  238 (347)
T 4fmz_A          194 ------PLASLTSLHYFTAYVNQITDITPV-------------------------ANMTRLNSLKIGNNKITDLSP----  238 (347)
T ss_dssp             ------GGGGCTTCCEEECCSSCCCCCGGG-------------------------GGCTTCCEEECCSSCCCCCGG----
T ss_pred             ------cccCCCccceeecccCCCCCCchh-------------------------hcCCcCCEEEccCCccCCCcc----
Confidence                  378899999999999888765442                         344455555555554422211    


Q ss_pred             HHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhc
Q 007371          340 TKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIG  419 (606)
Q Consensus       340 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~  419 (606)
                       ...+++|++|++++|. .+.++.    ...+++|++|++++|. ++.+.       .  ...+++|+.           
T Consensus       239 -~~~l~~L~~L~l~~n~-l~~~~~----~~~l~~L~~L~l~~n~-l~~~~-------~--~~~l~~L~~-----------  291 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQ-ISDINA----VKDLTKLKMLNVGSNQ-ISDIS-------V--LNNLSQLNS-----------  291 (347)
T ss_dssp             -GTTCTTCCEEECCSSC-CCCCGG----GTTCTTCCEEECCSSC-CCCCG-------G--GGGCTTCSE-----------
T ss_pred             -hhcCCCCCEEECCCCc-cCCChh----HhcCCCcCEEEccCCc-cCCCh-------h--hcCCCCCCE-----------
Confidence             1124677777777663 333332    3377888888888874 33321       0  344566666           


Q ss_pred             cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCC
Q 007371          420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCD  486 (606)
Q Consensus       420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~  486 (606)
                            |++.+|.--...+    ..++.+++|++|++++|+ ++.++|   +..+++|++|++++|+
T Consensus       292 ------L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          292 ------LFLNNNQLGNEDM----EVIGGLTNLTTLFLSQNH-ITDIRP---LASLSKMDSADFANQV  344 (347)
T ss_dssp             ------EECCSSCCCGGGH----HHHHTCTTCSEEECCSSS-CCCCGG---GGGCTTCSEESSSCC-
T ss_pred             ------EECcCCcCCCcCh----hHhhccccCCEEEccCCc-cccccC---hhhhhccceeehhhhc
Confidence                  8888775322222    123567899999999974 777755   5789999999999876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.92  E-value=2.9e-23  Score=216.68  Aligned_cols=342  Identities=18%  Similarity=0.129  Sum_probs=247.8

Q ss_pred             cccccCCCCChHhHHHHhhhhh-cCCCC-hhhHHH----HHhhhccCCCeEEEecCCCCcccCCcccccccceeeccccc
Q 007371           60 QKNFPIDALPRKEALQLFEKRM-FNIPN-VADLEK----KMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDG  133 (606)
Q Consensus        60 ~~~~~l~~L~~~~~~~Lf~~~~-~~~~~-~~~l~~----~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~  133 (606)
                      ..+-.+..++..+.+.+..... +..|. .+.+..    .+.+.....+++|++++|.+..+|..  .++|++|++++|.
T Consensus        25 ~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~--~~~L~~L~l~~n~  102 (454)
T 1jl5_A           25 EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL--PPHLESLVASCNS  102 (454)
T ss_dssp             ---------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--CTTCSEEECCSSC
T ss_pred             hCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--cCCCCEEEccCCc
Confidence            3455678888889998888754 34442 222221    11222226789999999999888774  4789999999999


Q ss_pred             ccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCC
Q 007371          134 SMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQL  213 (606)
Q Consensus       134 ~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L  213 (606)
                      +..+|.    .+++|++|++++|.++.+|...   ++|++|++++|.++..+.++++++|++|++++|.++.+|..+   
T Consensus       103 l~~lp~----~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~~---  172 (454)
T 1jl5_A          103 LTELPE----LPQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLP---  172 (454)
T ss_dssp             CSSCCC----CCTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCC---
T ss_pred             CCcccc----ccCCCcEEECCCCccCcccCCC---CCCCEEECcCCCCCCCcccCCCCCCCEEECCCCcCcccCCCc---
Confidence            888875    2589999999999998876532   689999999999988337999999999999999999988654   


Q ss_pred             CCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcccccc
Q 007371          214 TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSV  293 (606)
Q Consensus       214 ~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~  293 (606)
                      .+|++|++++|... .+| . ++++++|++|++++|.+...+.            ..++|++|++++|.+..+|.....+
T Consensus       173 ~~L~~L~L~~n~l~-~l~-~-~~~l~~L~~L~l~~N~l~~l~~------------~~~~L~~L~l~~n~l~~lp~~~~l~  237 (454)
T 1jl5_A          173 PSLEFIAAGNNQLE-ELP-E-LQNLPFLTAIYADNNSLKKLPD------------LPLSLESIVAGNNILEELPELQNLP  237 (454)
T ss_dssp             TTCCEEECCSSCCS-SCC-C-CTTCTTCCEEECCSSCCSSCCC------------CCTTCCEEECCSSCCSSCCCCTTCT
T ss_pred             ccccEEECcCCcCC-cCc-c-ccCCCCCCEEECCCCcCCcCCC------------CcCcccEEECcCCcCCcccccCCCC
Confidence            58999999998654 477 4 8999999999999998876442            1248999999999999888643449


Q ss_pred             CCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCC
Q 007371          294 ELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPR  373 (606)
Q Consensus       294 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~  373 (606)
                      +|+.|++..+. .. .++.   ..++|+.|++++|.+.+ ++.      .+++|+.|++++|. .+.++.      ..++
T Consensus       238 ~L~~L~l~~N~-l~-~l~~---~~~~L~~L~l~~N~l~~-l~~------~~~~L~~L~ls~N~-l~~l~~------~~~~  298 (454)
T 1jl5_A          238 FLTTIYADNNL-LK-TLPD---LPPSLEALNVRDNYLTD-LPE------LPQSLTFLDVSENI-FSGLSE------LPPN  298 (454)
T ss_dssp             TCCEEECCSSC-CS-SCCS---CCTTCCEEECCSSCCSC-CCC------CCTTCCEEECCSSC-CSEESC------CCTT
T ss_pred             CCCEEECCCCc-CC-cccc---cccccCEEECCCCcccc-cCc------ccCcCCEEECcCCc-cCcccC------cCCc
Confidence            99999995432 22 2222   24789999999988754 322      13789999999975 333433      2369


Q ss_pred             CcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccE
Q 007371          374 LKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFD  453 (606)
Q Consensus       374 L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~  453 (606)
                      |++|++++|. ++.+           ....++|+.                 |++.++ .+..++.       .+++|++
T Consensus       299 L~~L~l~~N~-l~~i-----------~~~~~~L~~-----------------L~Ls~N-~l~~lp~-------~~~~L~~  341 (454)
T 1jl5_A          299 LYYLNASSNE-IRSL-----------CDLPPSLEE-----------------LNVSNN-KLIELPA-------LPPRLER  341 (454)
T ss_dssp             CCEEECCSSC-CSEE-----------CCCCTTCCE-----------------EECCSS-CCSCCCC-------CCTTCCE
T ss_pred             CCEEECcCCc-CCcc-----------cCCcCcCCE-----------------EECCCC-ccccccc-------cCCcCCE
Confidence            9999999885 3333           222357777                 999885 3554432       3589999


Q ss_pred             EEeccCCCcccccchhHHhhcCCCcEEEEecCCCccee
Q 007371          454 LVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEV  491 (606)
Q Consensus       454 L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l  491 (606)
                      |++++| +++.+ |.    .+++|++|+++++. +..+
T Consensus       342 L~L~~N-~l~~l-p~----~l~~L~~L~L~~N~-l~~l  372 (454)
T 1jl5_A          342 LIASFN-HLAEV-PE----LPQNLKQLHVEYNP-LREF  372 (454)
T ss_dssp             EECCSS-CCSCC-CC----CCTTCCEEECCSSC-CSSC
T ss_pred             EECCCC-ccccc-cc----hhhhccEEECCCCC-CCcC
Confidence            999995 78887 43    47999999999865 5543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.92  E-value=1.6e-23  Score=218.88  Aligned_cols=289  Identities=16%  Similarity=0.122  Sum_probs=230.3

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      +.+++|++++|.+..++ ...+++|++|++++|.+..++   +.++++|++|++++|.++.+|  ++++++|++|++++|
T Consensus        64 ~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N  137 (457)
T 3bz5_A           64 TGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN  137 (457)
T ss_dssp             TTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTS
T ss_pred             CCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCC
Confidence            88999999999998886 458999999999999988885   588999999999999999986  899999999999999


Q ss_pred             CCCCCcccCCCCCCCEeeecCC-cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371          180 RLKDIAIVGQLKKLEILILARS-TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG  258 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~-~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~  258 (606)
                      .++.. .++++++|++|++++| .+..+  .++.+++|++|++++|.. ..+|   ++.+++|++|++++|.+...    
T Consensus       138 ~l~~l-~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l-~~l~---l~~l~~L~~L~l~~N~l~~~----  206 (457)
T 3bz5_A          138 TLTEI-DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKI-TELD---VSQNKLLNRLNCDTNNITKL----  206 (457)
T ss_dssp             CCSCC-CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCC-CCCC---CTTCTTCCEEECCSSCCSCC----
T ss_pred             cccee-ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcc-ceec---cccCCCCCEEECcCCcCCee----
Confidence            99884 3889999999999999 55566  478999999999999764 4466   78999999999999987654    


Q ss_pred             CCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccch
Q 007371          259 GSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEND  338 (606)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~  338 (606)
                             .++.+++|+.|++++|.+..+| ....++|+.|++.... ... .  ....+++|+.|+++.           
T Consensus       207 -------~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~-l~~-~--~~~~l~~L~~L~l~~-----------  263 (457)
T 3bz5_A          207 -------DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNP-LTE-L--DVSTLSKLTTLHCIQ-----------  263 (457)
T ss_dssp             -------CCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSC-C--CCTTCTTCCEEECTT-----------
T ss_pred             -------ccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCc-CCC-c--CHHHCCCCCEEeccC-----------
Confidence                   2678899999999999998887 2234888888884332 222 1  246677888888776           


Q ss_pred             hHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhh
Q 007371          339 GTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMI  418 (606)
Q Consensus       339 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~  418 (606)
                            .+|+.|++++|.....+|     .+.+++|+.|++++|+.+..+           +..+++|+.          
T Consensus       264 ------n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l-----------~~~~~~L~~----------  311 (457)
T 3bz5_A          264 ------TDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLL-----------DCQAAGITE----------  311 (457)
T ss_dssp             ------CCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEE-----------ECTTCCCSC----------
T ss_pred             ------CCCCEEECCCCccCCccc-----ccccccCCEEECCCCccccee-----------ccCCCcceE----------
Confidence                  578889999888777665     337899999999999877766           444566666          


Q ss_pred             ccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcce
Q 007371          419 GFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEE  490 (606)
Q Consensus       419 ~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~  490 (606)
                             |.+.++                 ++|++|++++ ++++.+ +   +.++++|++|+++++. +..
T Consensus       312 -------L~l~~~-----------------~~L~~L~L~~-N~l~~l-~---l~~l~~L~~L~l~~N~-l~~  353 (457)
T 3bz5_A          312 -------LDLSQN-----------------PKLVYLYLNN-TELTEL-D---VSHNTKLKSLSCVNAH-IQD  353 (457)
T ss_dssp             -------CCCTTC-----------------TTCCEEECTT-CCCSCC-C---CTTCTTCSEEECCSSC-CCB
T ss_pred             -------echhhc-----------------ccCCEEECCC-Cccccc-c---cccCCcCcEEECCCCC-CCC
Confidence                   655544                 5677788877 467765 3   4678888888887743 443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=2.6e-23  Score=225.64  Aligned_cols=300  Identities=17%  Similarity=0.139  Sum_probs=220.6

Q ss_pred             CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l  176 (606)
                      ..++.+++++|.+..+|...  .+++|++|++++|.+..++...|..+++|++|++++|.++.+| ..++++++|++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEe
Confidence            78899999999999999865  7899999999999999888777899999999999999999955 46799999999999


Q ss_pred             eCCCCCC-Cc-ccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371          177 DYCRLKD-IA-IVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       177 ~~~~~~~-~~-~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      ++|.++. |+ .++++++|++|++++|.++.+|+ .++.+++|++|++++|... .++   ++.+++|++|++++|.+..
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTCSEEECCSSCCSE
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhhhhhhcccCcccc
Confidence            9999998 54 46999999999999999997755 6899999999999997654 444   6789999999999987643


Q ss_pred             ccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371          254 EKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI  333 (606)
Q Consensus       254 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~  333 (606)
                                   +....+|+.|++++|.+..++....                          ++|+.|++++|.+.+ 
T Consensus       207 -------------l~~~~~L~~L~ls~n~l~~~~~~~~--------------------------~~L~~L~L~~n~l~~-  246 (597)
T 3oja_B          207 -------------LAIPIAVEELDASHNSINVVRGPVN--------------------------VELTILKLQHNNLTD-  246 (597)
T ss_dssp             -------------EECCTTCSEEECCSSCCCEEECSCC--------------------------SCCCEEECCSSCCCC-
T ss_pred             -------------ccCCchhheeeccCCcccccccccC--------------------------CCCCEEECCCCCCCC-
Confidence                         4455689999999998876554321                          345555555554432 


Q ss_pred             cccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhh
Q 007371          334 LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKC  413 (606)
Q Consensus       334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~  413 (606)
                         +.++. .+++|+.|++++|......|..+.   .+++|++|++++|. +..+..        ....+|+|+.     
T Consensus       247 ---~~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~---~l~~L~~L~Ls~N~-l~~l~~--------~~~~l~~L~~-----  305 (597)
T 3oja_B          247 ---TAWLL-NYPGLVEVDLSYNELEKIMYHPFV---KMQRLERLYISNNR-LVALNL--------YGQPIPTLKV-----  305 (597)
T ss_dssp             ---CGGGG-GCTTCSEEECCSSCCCEEESGGGT---TCSSCCEEECTTSC-CCEEEC--------SSSCCTTCCE-----
T ss_pred             ---Chhhc-cCCCCCEEECCCCccCCCCHHHhc---CccCCCEEECCCCC-CCCCCc--------ccccCCCCcE-----
Confidence               12222 236677777776655554455454   67777777777764 333311        0234566666     


Q ss_pred             hhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCC
Q 007371          414 YEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCD  486 (606)
Q Consensus       414 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~  486 (606)
                                  |++.++. +..++.    .+..+++|+.|++++| .+..+ +   +..+++|++|++++++
T Consensus       306 ------------L~Ls~N~-l~~i~~----~~~~l~~L~~L~L~~N-~l~~~-~---~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          306 ------------LDLSHNH-LLHVER----NQPQFDRLENLYLDHN-SIVTL-K---LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             ------------EECCSSC-CCCCGG----GHHHHTTCSEEECCSS-CCCCC-C---CCTTCCCSEEECCSSC
T ss_pred             ------------EECCCCC-CCccCc----ccccCCCCCEEECCCC-CCCCc-C---hhhcCCCCEEEeeCCC
Confidence                        7777653 333432    2356777888888774 46665 3   3466788888887765

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=2.2e-22  Score=201.18  Aligned_cols=221  Identities=21%  Similarity=0.275  Sum_probs=156.0

Q ss_pred             CCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCC
Q 007371          145 TEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSN  223 (606)
Q Consensus       145 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~  223 (606)
                      ..++++|++++|.++.+|..++++++|++|++++|.+.. |..++++++|++|++++|.++.+|..++++++|++|++++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence            466777777777777777777777777777777777666 6667777777777777777777777777777777777777


Q ss_pred             CcccccccHHHhhC---------CCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccc-c
Q 007371          224 CWLLEVIAPNVISK---------LSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVS-V  293 (606)
Q Consensus       224 ~~~~~~~p~~~i~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~  293 (606)
                      |+..+.+|.. ++.         +++|++|++++|.+...+         ..++++++|++|++++|.+..+|..+.. +
T Consensus       160 n~~~~~~p~~-~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp---------~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~  229 (328)
T 4fcg_A          160 CPELTELPEP-LASTDASGEHQGLVNLQSLRLEWTGIRSLP---------ASIANLQNLKSLKIRNSPLSALGPAIHHLP  229 (328)
T ss_dssp             ETTCCCCCSC-SEEEC-CCCEEESTTCCEEEEEEECCCCCC---------GGGGGCTTCCEEEEESSCCCCCCGGGGGCT
T ss_pred             CCCccccChh-HhhccchhhhccCCCCCEEECcCCCcCcch---------HhhcCCCCCCEEEccCCCCCcCchhhccCC
Confidence            6666666655 433         777777777777665332         4567777777777777777666665543 6


Q ss_pred             CCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCC
Q 007371          294 ELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPR  373 (606)
Q Consensus       294 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~  373 (606)
                      +|+.|++. ++......+..+..+++|+.|++++|...+.++.  ++. .+++|+.|++++|...+.+|..+.   .+++
T Consensus       230 ~L~~L~Ls-~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~--~~~-~l~~L~~L~L~~n~~~~~iP~~l~---~L~~  302 (328)
T 4fcg_A          230 KLEELDLR-GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPL--DIH-RLTQLEKLDLRGCVNLSRLPSLIA---QLPA  302 (328)
T ss_dssp             TCCEEECT-TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCT--TGG-GCTTCCEEECTTCTTCCCCCGGGG---GSCT
T ss_pred             CCCEEECc-CCcchhhhHHHhcCCCCCCEEECCCCCchhhcch--hhh-cCCCCCEEeCCCCCchhhccHHHh---hccC
Confidence            67777663 3233444556678888899999999887666543  343 358899999999999999998877   8888


Q ss_pred             CcEEEeecC
Q 007371          374 LKHLHVKSC  382 (606)
Q Consensus       374 L~~L~l~~c  382 (606)
                      |+.+.+...
T Consensus       303 L~~l~l~~~  311 (328)
T 4fcg_A          303 NCIILVPPH  311 (328)
T ss_dssp             TCEEECCGG
T ss_pred             ceEEeCCHH
Confidence            888888653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.89  E-value=1.4e-21  Score=196.13  Aligned_cols=241  Identities=16%  Similarity=0.169  Sum_probs=175.7

Q ss_pred             cccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeee
Q 007371          122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILIL  198 (606)
Q Consensus       122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l  198 (606)
                      .+++.++++++....+|..+   .+++++|++++|.++.++. .++++++|++|++++|.++.  |..++++++|++|++
T Consensus        31 c~l~~l~~~~~~l~~lp~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL  107 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEEecCCCccccCccC---CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEEC
Confidence            36788888888888888754   4688999999999888655 78899999999999998887  678889999999999


Q ss_pred             cCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEE
Q 007371          199 ARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEI  278 (606)
Q Consensus       199 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  278 (606)
                      ++|.++.+|..+.  ++|++|++++|... .++...++++++|++|++++|.+.....      ....++.+++|++|++
T Consensus       108 s~n~l~~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l~~L~~L~l  178 (330)
T 1xku_A          108 SKNQLKELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI------ENGAFQGMKKLSYIRI  178 (330)
T ss_dssp             CSSCCSBCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGB------CTTGGGGCTTCCEEEC
T ss_pred             CCCcCCccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCc------ChhhccCCCCcCEEEC
Confidence            9999988887765  78999999987644 5555548899999999999987753211      1266788899999999


Q ss_pred             eeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCc
Q 007371          279 EVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGV  358 (606)
Q Consensus       279 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  358 (606)
                      ++|.+..+|..+. ++|+.|++. ++......+..+..+++|+.|++++|.+.+...  ..+. .+++|++|++++|. +
T Consensus       179 ~~n~l~~l~~~~~-~~L~~L~l~-~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~~-~l~~L~~L~L~~N~-l  252 (330)
T 1xku_A          179 ADTNITTIPQGLP-PSLTELHLD-GNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLA-NTPHLRELHLNNNK-L  252 (330)
T ss_dssp             CSSCCCSCCSSCC-TTCSEEECT-TSCCCEECTGGGTTCTTCCEEECCSSCCCEECT--TTGG-GSTTCCEEECCSSC-C
T ss_pred             CCCccccCCcccc-ccCCEEECC-CCcCCccCHHHhcCCCCCCEEECCCCcCceeCh--hhcc-CCCCCCEEECCCCc-C
Confidence            9998888877654 677777773 222333334556677777888887776543221  1222 24677777777763 3


Q ss_pred             ccccccccCCCCCCCCcEEEeecCC
Q 007371          359 QSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       359 ~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      ..+|..+.   .+++|++|++++|+
T Consensus       253 ~~lp~~l~---~l~~L~~L~l~~N~  274 (330)
T 1xku_A          253 VKVPGGLA---DHKYIQVVYLHNNN  274 (330)
T ss_dssp             SSCCTTTT---TCSSCCEEECCSSC
T ss_pred             ccCChhhc---cCCCcCEEECCCCc
Confidence            45665554   67777777777764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.89  E-value=4e-22  Score=200.16  Aligned_cols=240  Identities=16%  Similarity=0.180  Sum_probs=167.3

Q ss_pred             cccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeee
Q 007371          122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILIL  198 (606)
Q Consensus       122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l  198 (606)
                      .+++.++++++....+|..+   .++|++|++++|.+..+ |..++++++|++|++++|.++.  |..++++++|++|++
T Consensus        33 c~l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             EETTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             ccCCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            36888888888888888765   46889999999988885 4578899999999999998887  578889999999999


Q ss_pred             cCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEE
Q 007371          199 ARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEI  278 (606)
Q Consensus       199 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  278 (606)
                      ++|.++.+|..+.  ++|++|++++|.. ..+|...++.+++|++|++++|.+.....      ....++.+ +|++|++
T Consensus       110 ~~n~l~~l~~~~~--~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~~~l-~L~~L~l  179 (332)
T 2ft3_A          110 SKNHLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNCIEMGGNPLENSGF------EPGAFDGL-KLNYLRI  179 (332)
T ss_dssp             CSSCCCSCCSSCC--TTCCEEECCSSCC-CCCCSGGGSSCSSCCEEECCSCCCBGGGS------CTTSSCSC-CCSCCBC
T ss_pred             CCCcCCccCcccc--ccCCEEECCCCcc-CccCHhHhCCCccCCEEECCCCccccCCC------CcccccCC-ccCEEEC
Confidence            9998888887766  7899999998764 45555548889999999999887753110      11455666 8889999


Q ss_pred             eeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCc
Q 007371          279 EVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGV  358 (606)
Q Consensus       279 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  358 (606)
                      ++|.+..+|..+. ++|+.|++. ++......+..+..+++|+.|++++|.+.+..+  .++. .+++|+.|++++|. +
T Consensus       180 ~~n~l~~l~~~~~-~~L~~L~l~-~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~--~~~~-~l~~L~~L~L~~N~-l  253 (332)
T 2ft3_A          180 SEAKLTGIPKDLP-ETLNELHLD-HNKIQAIELEDLLRYSKLYRLGLGHNQIRMIEN--GSLS-FLPTLRELHLDNNK-L  253 (332)
T ss_dssp             CSSBCSSCCSSSC-SSCSCCBCC-SSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCT--TGGG-GCTTCCEEECCSSC-C
T ss_pred             cCCCCCccCcccc-CCCCEEECC-CCcCCccCHHHhcCCCCCCEEECCCCcCCcCCh--hHhh-CCCCCCEEECCCCc-C
Confidence            9888888776543 567766663 222222233445666667777777665533211  1122 23666666666653 3


Q ss_pred             ccccccccCCCCCCCCcEEEeecCC
Q 007371          359 QSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       359 ~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      +.+|..+.   .+++|++|++++++
T Consensus       254 ~~lp~~l~---~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          254 SRVPAGLP---DLKLLQVVYLHTNN  275 (332)
T ss_dssp             CBCCTTGG---GCTTCCEEECCSSC
T ss_pred             eecChhhh---cCccCCEEECCCCC
Confidence            35555444   56666666666653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.89  E-value=1.2e-22  Score=201.69  Aligned_cols=245  Identities=15%  Similarity=0.149  Sum_probs=183.0

Q ss_pred             CCCeEEEecCCCCc---ccCCcc-cccccceeeccc-ccc-cccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCc
Q 007371          100 KDPIAISLTYGGIQ---VLPERL-QCPCLELLHTEG-DGS-MQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQ  172 (606)
Q Consensus       100 ~~l~~L~l~~~~~~---~l~~~~-~l~~L~~L~~~~-~~~-~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~  172 (606)
                      .++++|++++|.+.   .+|..+ .+++|++|++++ +.. +.+|..+ .++++|++|++++|.++. +|..++++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            46889999999885   577666 888999999873 544 4666664 789999999999998884 888889999999


Q ss_pred             EEEeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCC-CCCEEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371          173 TLCLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLT-RLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN  248 (606)
Q Consensus       173 ~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~-~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~  248 (606)
                      +|++++|.+..  |..+.++++|++|++++|.++ .+|..++.++ +|++|++++|...+.+|.. ++.++ |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~-~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChH-HhCCc-ccEEECcC
Confidence            99999998875  778888999999999999888 7888888888 8999999988877778877 78887 99999998


Q ss_pred             CCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCc
Q 007371          249 SFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGL  328 (606)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~  328 (606)
                      |.+....+        ..++.+++|+.|++++|.+...+..                        +..+++|+.|++++|
T Consensus       207 N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~------------------------~~~l~~L~~L~Ls~N  254 (313)
T 1ogq_A          207 NMLEGDAS--------VLFGSDKNTQKIHLAKNSLAFDLGK------------------------VGLSKNLNGLDLRNN  254 (313)
T ss_dssp             SEEEECCG--------GGCCTTSCCSEEECCSSEECCBGGG------------------------CCCCTTCCEEECCSS
T ss_pred             CcccCcCC--------HHHhcCCCCCEEECCCCceeeecCc------------------------ccccCCCCEEECcCC
Confidence            88766554        6778888999999988876533222                        234456666666666


Q ss_pred             ccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCce
Q 007371          329 EKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEIL  386 (606)
Q Consensus       329 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~  386 (606)
                      .+.+.+  |.++.. +++|+.|++++|.....+|..    +.+++|+.|++.+++.+.
T Consensus       255 ~l~~~~--p~~l~~-l~~L~~L~Ls~N~l~~~ip~~----~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          255 RIYGTL--PQGLTQ-LKFLHSLNVSFNNLCGEIPQG----GNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             CCEECC--CGGGGG-CTTCCEEECCSSEEEEECCCS----TTGGGSCGGGTCSSSEEE
T ss_pred             cccCcC--ChHHhc-CcCCCEEECcCCcccccCCCC----ccccccChHHhcCCCCcc
Confidence            654333  223332 367777777776655556552    367777777777776443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.87  E-value=1.5e-21  Score=194.98  Aligned_cols=218  Identities=22%  Similarity=0.291  Sum_probs=175.5

Q ss_pred             cCCCeEEEecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371           99 RKDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD  177 (606)
Q Consensus        99 ~~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~  177 (606)
                      ...++.|++++|.+..+|... .+++|++|++++|.+..+|..+ .++++|++|++++|.++.+|..++++++|++|+++
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            378999999999999999877 8999999999999988888775 88999999999999999999999999999999999


Q ss_pred             CCCCCC--CcccCC---------CCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEc
Q 007371          178 YCRLKD--IAIVGQ---------LKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYM  246 (606)
Q Consensus       178 ~~~~~~--~~~i~~---------l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l  246 (606)
                      +|.+.+  |..++.         +++|++|++++|.++.+|..++++++|++|++++|... .+|.. ++.+++|++|++
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L~L  236 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDL  236 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEEEC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEEEC
Confidence            987555  665554         99999999999999999999999999999999997754 57776 899999999999


Q ss_pred             cCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCC-CCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEe
Q 007371          247 GNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADA-EILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMML  325 (606)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L  325 (606)
                      ++|.+....+        ..++.+++|++|++++|.. ..+|..                        +..+++|+.|++
T Consensus       237 s~n~~~~~~p--------~~~~~l~~L~~L~L~~n~~~~~~p~~------------------------~~~l~~L~~L~L  284 (328)
T 4fcg_A          237 RGCTALRNYP--------PIFGGRAPLKRLILKDCSNLLTLPLD------------------------IHRLTQLEKLDL  284 (328)
T ss_dssp             TTCTTCCBCC--------CCTTCCCCCCEEECTTCTTCCBCCTT------------------------GGGCTTCCEEEC
T ss_pred             cCCcchhhhH--------HHhcCCCCCCEEECCCCCchhhcchh------------------------hhcCCCCCEEeC
Confidence            9988776655        6788899999999998765 445544                        345556666666


Q ss_pred             cCcccccccccchhHHHhhccccceeccc
Q 007371          326 KGLEKVSILQENDGTKMLLQRTEGLWLET  354 (606)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~l~~L~~L~l~~  354 (606)
                      ++|...+.++  .++.. +++|+.+.+..
T Consensus       285 ~~n~~~~~iP--~~l~~-L~~L~~l~l~~  310 (328)
T 4fcg_A          285 RGCVNLSRLP--SLIAQ-LPANCIILVPP  310 (328)
T ss_dssp             TTCTTCCCCC--GGGGG-SCTTCEEECCG
T ss_pred             CCCCchhhcc--HHHhh-ccCceEEeCCH
Confidence            6666555443  23332 35555555543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.86  E-value=1e-21  Score=195.14  Aligned_cols=248  Identities=15%  Similarity=0.092  Sum_probs=183.0

Q ss_pred             cccceeeccccccc---ccchhHhcCCCCCcEEEeeC-CcCcc-CCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCC
Q 007371          122 PCLELLHTEGDGSM---QVSDHFFKGTEGLKVLNFTR-IHFSS-LPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLE  194 (606)
Q Consensus       122 ~~L~~L~~~~~~~~---~~~~~~~~~l~~L~~L~l~~-~~l~~-lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~  194 (606)
                      .+++.|+++++.+.   .+|..+ .++++|++|++++ |.+.. +|..++++++|++|++++|.+++  |..+.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            46788887777765   466554 7788888888884 77764 78788888888888888888774  67788888888


Q ss_pred             EeeecCCcCC-cccccccCCCCCCEEecCCCcccccccHHHhhCCC-CCCEEEccCCCCCCccccCCCccchHhhccCCC
Q 007371          195 ILILARSTIK-QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLS-QLEELYMGNSFSGWEKVEGGSNASLVELERLTK  272 (606)
Q Consensus       195 ~L~l~~~~l~-~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~  272 (606)
                      +|++++|.++ .+|..++.+++|++|++++|...+.+|.. ++.++ +|++|++++|.+....+        ..++.++ 
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~~--------~~~~~l~-  198 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP--------PTFANLN-  198 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC--------GGGGGCC-
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH-HhhhhhcCcEEECcCCeeeccCC--------hHHhCCc-
Confidence            8888888777 67778888888888888887776677777 77777 88888888887765444        5666666 


Q ss_pred             CCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceec
Q 007371          273 LATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWL  352 (606)
Q Consensus       273 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l  352 (606)
                      |++|++++|.+...+                       +..+..+++|+.|++++|.+.+..+.   + ..+++|++|++
T Consensus       199 L~~L~Ls~N~l~~~~-----------------------~~~~~~l~~L~~L~L~~N~l~~~~~~---~-~~l~~L~~L~L  251 (313)
T 1ogq_A          199 LAFVDLSRNMLEGDA-----------------------SVLFGSDKNTQKIHLAKNSLAFDLGK---V-GLSKNLNGLDL  251 (313)
T ss_dssp             CSEEECCSSEEEECC-----------------------GGGCCTTSCCSEEECCSSEECCBGGG---C-CCCTTCCEEEC
T ss_pred             ccEEECcCCcccCcC-----------------------CHHHhcCCCCCEEECCCCceeeecCc---c-cccCCCCEEEC
Confidence            888888777654222                       23356778888999999877544332   2 23589999999


Q ss_pred             ccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccc
Q 007371          353 ETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFP  432 (606)
Q Consensus       353 ~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~  432 (606)
                      ++|.....+|..+.   .+++|++|++++|+--..+        |. ...+++|+.                 |.+.+.+
T Consensus       252 s~N~l~~~~p~~l~---~l~~L~~L~Ls~N~l~~~i--------p~-~~~l~~L~~-----------------l~l~~N~  302 (313)
T 1ogq_A          252 RNNRIYGTLPQGLT---QLKFLHSLNVSFNNLCGEI--------PQ-GGNLQRFDV-----------------SAYANNK  302 (313)
T ss_dssp             CSSCCEECCCGGGG---GCTTCCEEECCSSEEEEEC--------CC-STTGGGSCG-----------------GGTCSSS
T ss_pred             cCCcccCcCChHHh---cCcCCCEEECcCCcccccC--------CC-CccccccCh-----------------HHhcCCC
Confidence            99988778888777   8999999999999633232        11 245667777                 8888877


Q ss_pred             cccc
Q 007371          433 RLKE  436 (606)
Q Consensus       433 ~l~~  436 (606)
                      .+..
T Consensus       303 ~lc~  306 (313)
T 1ogq_A          303 CLCG  306 (313)
T ss_dssp             EEES
T ss_pred             CccC
Confidence            5554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=2.2e-21  Score=196.55  Aligned_cols=269  Identities=17%  Similarity=0.140  Sum_probs=205.0

Q ss_pred             CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCC
Q 007371          102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~  180 (606)
                      ....+.+++.+..+|.... ++|++|+++++.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|.
T Consensus        33 ~~~c~~~~~~l~~iP~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  111 (353)
T 2z80_A           33 NGICKGSSGSLNSIPSGLT-EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY  111 (353)
T ss_dssp             TSEEECCSTTCSSCCTTCC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CeEeeCCCCCccccccccc-ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence            3457888888888887542 4899999999988888886678899999999999998884 5678899999999999999


Q ss_pred             CCC-Cc-ccCCCCCCCEeeecCCcCCcccc--cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371          181 LKD-IA-IVGQLKKLEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV  256 (606)
Q Consensus       181 ~~~-~~-~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~  256 (606)
                      ++. +. .++++++|++|++++|.++.+|.  .+.++++|++|++++|...+.++...++++++|++|++++|.+....+
T Consensus       112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  191 (353)
T 2z80_A          112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEP  191 (353)
T ss_dssp             CSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT
T ss_pred             CCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCH
Confidence            888 54 48889999999999999988887  688899999999998865666655448889999999999988776654


Q ss_pred             cCCCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEEeCCCCCCC--CCCcccCCCCCcEEEecCccccc
Q 007371          257 EGGSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIRIGDESEDE--FDPLLVKSEAPRLMMLKGLEKVS  332 (606)
Q Consensus       257 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~L~~~~~~~  332 (606)
                              ..++.+++|++|++++|.+..+|..+.  .++|+.|++.........  ..........++.+++.++.+.+
T Consensus       192 --------~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~  263 (353)
T 2z80_A          192 --------KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD  263 (353)
T ss_dssp             --------TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCH
T ss_pred             --------HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccC
Confidence                    678888999999999998887776553  388999998544332211  11123346678888998876644


Q ss_pred             cc--ccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          333 IL--QENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       333 ~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      .-  ..|.++. .+++|+.|++++|.. +.+|..+  ++.+++|++|++++|+
T Consensus       264 ~~l~~l~~~l~-~l~~L~~L~Ls~N~l-~~i~~~~--~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          264 ESLFQVMKLLN-QISGLLELEFSRNQL-KSVPDGI--FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             HHHHHHHHHHH-TCTTCCEEECCSSCC-CCCCTTT--TTTCTTCCEEECCSSC
T ss_pred             cchhhhHHHHh-cccCCCEEECCCCCC-CccCHHH--HhcCCCCCEEEeeCCC
Confidence            21  1233333 358999999999854 4677653  2489999999999997

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.86  E-value=5.9e-21  Score=191.60  Aligned_cols=263  Identities=15%  Similarity=0.143  Sum_probs=192.8

Q ss_pred             CCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCC
Q 007371          101 DPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       101 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~  179 (606)
                      .++.++++++.+..+|... .+++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus        34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  112 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN  112 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred             cCCEEECCCCCccccCCCC-CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence            4678888888888887655 36888899888888888766678899999999999988884 778888999999999998


Q ss_pred             CCCC-CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccc--cccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          180 RLKD-IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLE--VIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~--~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      .+.. |..+.  .+|++|++++|.++.+|.. +.++++|++|++++|....  ..+.. ++.+ +|++|++++|.+...+
T Consensus       113 ~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l-~L~~L~l~~n~l~~l~  188 (332)
T 2ft3_A          113 HLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-FDGL-KLNYLRISEAKLTGIP  188 (332)
T ss_dssp             CCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-SCSC-CCSCCBCCSSBCSSCC
T ss_pred             cCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCccc-ccCC-ccCEEECcCCCCCccC
Confidence            8887 55554  7899999999988887764 7888999999998876532  33443 6666 8889999888877654


Q ss_pred             ccCCCccchHhhccCCCCCEEEEeeCCCCCCCc-ccc-ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371          256 VEGGSNASLVELERLTKLATLEIEVADAEILPP-NFV-SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI  333 (606)
Q Consensus       256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~  333 (606)
                      .         .+.  ++|++|++++|.+..++. .+. .++|+.|++.. +......+..+..+++|+.|++++|.+. .
T Consensus       189 ~---------~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~  255 (332)
T 2ft3_A          189 K---------DLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH-NQIRMIENGSLSFLPTLRELHLDNNKLS-R  255 (332)
T ss_dssp             S---------SSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCS-SCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred             c---------ccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCC-CcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence            3         122  578888888888877663 333 37888888843 3333333446788899999999998775 3


Q ss_pred             cccchhHHHhhccccceecccccCcccccccccC---CCCCCCCcEEEeecCCC
Q 007371          334 LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD---GEGFPRLKHLHVKSCSE  384 (606)
Q Consensus       334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~l~~L~~L~l~~c~~  384 (606)
                        .|.++.. +++|+.|++++|.....-+..+.+   ...+++|+.|++.+++.
T Consensus       256 --lp~~l~~-l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~  306 (332)
T 2ft3_A          256 --VPAGLPD-LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPV  306 (332)
T ss_dssp             --CCTTGGG-CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSS
T ss_pred             --cChhhhc-CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcc
Confidence              3444443 589999999987544332233321   11267899999999873

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=1.6e-22  Score=220.05  Aligned_cols=91  Identities=13%  Similarity=0.083  Sum_probs=54.0

Q ss_pred             cccCCccEEEeccCCC-cccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccc
Q 007371          446 SFFNNLFDLVVDDCTN-MSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLK  524 (606)
Q Consensus       446 ~~l~~L~~L~i~~C~~-L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~  524 (606)
                      ..+++|++|++++|.+ +.+.........+++|++|++++|. +.+...         +.....+++|++|+|++|+ ++
T Consensus       433 ~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~---------~~~~~~~~~L~~L~l~~n~-l~  501 (592)
T 3ogk_B          433 IGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGL---------MEFSRGCPNLQKLEMRGCC-FS  501 (592)
T ss_dssp             HHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHH---------HHHHTCCTTCCEEEEESCC-CB
T ss_pred             HhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHH---------HHHHhcCcccCeeeccCCC-Cc
Confidence            3467788888877654 4443333344557778888887765 332111         1112356788888888886 44


Q ss_pred             cccccccccccCCCcceEeeccCC
Q 007371          525 RFCNFTRNIIELPKLRYLTIENCP  548 (606)
Q Consensus       525 ~l~~~~~~~~~~~~L~~L~i~~Cp  548 (606)
                      .... +.....+++|+.|++++|+
T Consensus       502 ~~~~-~~~~~~l~~L~~L~ls~n~  524 (592)
T 3ogk_B          502 ERAI-AAAVTKLPSLRYLWVQGYR  524 (592)
T ss_dssp             HHHH-HHHHHHCSSCCEEEEESCB
T ss_pred             HHHH-HHHHHhcCccCeeECcCCc
Confidence            3211 1134457888888888886

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.86  E-value=5e-23  Score=223.95  Aligned_cols=353  Identities=16%  Similarity=0.080  Sum_probs=198.9

Q ss_pred             cCCCCCcEEEeeCCcCcc-CCccccC-C-CCCcEEEeeCCC-CCC---CcccCCCCCCCEeeecCCcCCc-----ccccc
Q 007371          143 KGTEGLKVLNFTRIHFSS-LPSSLGC-L-INLQTLCLDYCR-LKD---IAIVGQLKKLEILILARSTIKQ-----LPLEI  210 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~-lp~~~~~-l-~~L~~L~l~~~~-~~~---~~~i~~l~~L~~L~l~~~~l~~-----lp~~i  210 (606)
                      ..+++|++|+++++.++. .+..+.. + .+|++|++++|. +..   +....++++|++|++++|.+..     ++...
T Consensus       109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~  188 (592)
T 3ogk_B          109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA  188 (592)
T ss_dssp             HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred             hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence            467777777777776654 3334444 2 337777777765 222   1333466777777777775542     33334


Q ss_pred             cCCCCCCEEecCCCccc----ccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC--
Q 007371          211 GQLTRLQLLDLSNCWLL----EVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE--  284 (606)
Q Consensus       211 ~~L~~L~~L~l~~~~~~----~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--  284 (606)
                      ..+++|++|++++|...    ..++.. +.++++|++|++++|.+...+         ..++.+++|++|++..+...  
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~~~~l~---------~~~~~~~~L~~L~l~~~~~~~~  258 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETI-ARNCRSLVSVKVGDFEILELV---------GFFKAAANLEEFCGGSLNEDIG  258 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHH-HHHCTTCCEEECSSCBGGGGH---------HHHHHCTTCCEEEECBCCCCTT
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHH-HhhCCCCcEEeccCccHHHHH---------HHHhhhhHHHhhcccccccccc
Confidence            56677777777776543    223332 566777777777776554432         56677777777777643221  


Q ss_pred             --CCCcccc-ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371          285 --ILPPNFV-SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV  361 (606)
Q Consensus       285 --~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  361 (606)
                        ..+..+. .++|+.+.+..  .....++..+..+++|+.|++++|.+.. .... .+...+++|+.|++.++.....+
T Consensus       259 ~~~~~~~l~~~~~L~~L~l~~--~~~~~l~~~~~~~~~L~~L~Ls~~~l~~-~~~~-~~~~~~~~L~~L~L~~~~~~~~l  334 (592)
T 3ogk_B          259 MPEKYMNLVFPRKLCRLGLSY--MGPNEMPILFPFAAQIRKLDLLYALLET-EDHC-TLIQKCPNLEVLETRNVIGDRGL  334 (592)
T ss_dssp             CTTSSSCCCCCTTCCEEEETT--CCTTTGGGGGGGGGGCCEEEETTCCCCH-HHHH-HHHTTCTTCCEEEEEGGGHHHHH
T ss_pred             hHHHHHHhhccccccccCccc--cchhHHHHHHhhcCCCcEEecCCCcCCH-HHHH-HHHHhCcCCCEEeccCccCHHHH
Confidence              1112221 26777776622  2333445556677788888888866321 1111 12234578888888744333333


Q ss_pred             cccccCCCCCCCCcEEEeec----------CCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecccc
Q 007371          362 VHELDDGEGFPRLKHLHVKS----------CSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHF  431 (606)
Q Consensus       362 ~~~l~~~~~l~~L~~L~l~~----------c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~  431 (606)
                      +....   .+++|++|++++          |..++....      ..+...+++|+.                 |.+ .|
T Consensus       335 ~~~~~---~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~------~~l~~~~~~L~~-----------------L~l-~~  387 (592)
T 3ogk_B          335 EVLAQ---YCKQLKRLRIERGADEQGMEDEEGLVSQRGL------IALAQGCQELEY-----------------MAV-YV  387 (592)
T ss_dssp             HHHHH---HCTTCCEEEEECCCCSSTTSSTTCCCCHHHH------HHHHHHCTTCSE-----------------EEE-EE
T ss_pred             HHHHH---hCCCCCEEEeecCccccccccccCccCHHHH------HHHHhhCccCeE-----------------EEe-ec
Confidence            33223   677888888884          655543100      000233566666                 877 44


Q ss_pred             ccccccccCCCCCcc-ccCCccEEEec---cCCCcccccc----hhHHhhcCCCcEEEEecCCC-cceeecccccccccc
Q 007371          432 PRLKEIWHGQALPVS-FFNNLFDLVVD---DCTNMSSAIP----ANLLRCLNNLVYLEVRNCDS-LEEVLHLEELINADK  502 (606)
Q Consensus       432 ~~l~~~~~~~~~~~~-~l~~L~~L~i~---~C~~L~~l~~----~~~~~~l~~L~~L~i~~c~~-l~~l~~~~~~~~~~~  502 (606)
                      .++......   .++ .+++|+.|++.   .|+.+++.+.    ...+.++++|++|++++|.. +......        
T Consensus       388 ~~l~~~~~~---~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~--------  456 (592)
T 3ogk_B          388 SDITNESLE---SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS--------  456 (592)
T ss_dssp             SCCCHHHHH---HHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH--------
T ss_pred             CCccHHHHH---HHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH--------
Confidence            544432111   112 36788888887   3667776421    12356788888888887764 2221110        


Q ss_pred             CCCCCCCCccceEeeccccccccccccccccccCCCcceEeeccCCCCc
Q 007371          503 EHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIENCPDME  551 (606)
Q Consensus       503 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~  551 (606)
                       .....+++|++|++.+|. ++.... +.....+++|++|++++|+ +.
T Consensus       457 -~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~~~~~L~~L~l~~n~-l~  501 (592)
T 3ogk_B          457 -YIGQYSPNVRWMLLGYVG-ESDEGL-MEFSRGCPNLQKLEMRGCC-FS  501 (592)
T ss_dssp             -HHHHSCTTCCEEEECSCC-SSHHHH-HHHHTCCTTCCEEEEESCC-CB
T ss_pred             -HHHHhCccceEeeccCCC-CCHHHH-HHHHhcCcccCeeeccCCC-Cc
Confidence             011247888888888774 443211 1134557888888888887 53

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.86  E-value=2.3e-20  Score=187.20  Aligned_cols=264  Identities=14%  Similarity=0.150  Sum_probs=193.2

Q ss_pred             CCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCC
Q 007371          101 DPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       101 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~  179 (606)
                      .++.++++++.+..+|... .+++++|++++|.+..++...|.++++|++|++++|.++.+ |..++++++|++|++++|
T Consensus        32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n  110 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN  110 (330)
T ss_dssp             ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS
T ss_pred             CCeEEEecCCCccccCccC-CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC
Confidence            4678888888887777644 26788888888888888876678899999999999988884 778888999999999998


Q ss_pred             CCCC-CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccc--cccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          180 RLKD-IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLE--VIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~--~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      .++. |..+.  ++|++|++++|.++.++. .+.++++|++|++++|....  ..+.. ++++++|++|++++|.+...+
T Consensus       111 ~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~~~l~~L~~L~l~~n~l~~l~  187 (330)
T 1xku_A          111 QLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA-FQGMKKLSYIRIADTNITTIP  187 (330)
T ss_dssp             CCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG-GGGCTTCCEEECCSSCCCSCC
T ss_pred             cCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh-ccCCCCcCEEECCCCccccCC
Confidence            8877 55544  789999999988887765 47888999999998876532  34444 788899999999888877654


Q ss_pred             ccCCCccchHhhccCCCCCEEEEeeCCCCCCC-ccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371          256 VEGGSNASLVELERLTKLATLEIEVADAEILP-PNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI  333 (606)
Q Consensus       256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~  333 (606)
                      .         .+  .++|++|++++|.+..++ ..+.. ++|+.|++..+ ......+..+..+++|+.|++++|.+.  
T Consensus       188 ~---------~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~--  253 (330)
T 1xku_A          188 Q---------GL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV--  253 (330)
T ss_dssp             S---------SC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS--
T ss_pred             c---------cc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc--
Confidence            3         12  268889999888887664 33433 78888888433 233333346788899999999998775  


Q ss_pred             cccchhHHHhhccccceecccccCcccccccccC---CCCCCCCcEEEeecCCC
Q 007371          334 LQENDGTKMLLQRTEGLWLETLEGVQSVVHELDD---GEGFPRLKHLHVKSCSE  384 (606)
Q Consensus       334 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~---~~~l~~L~~L~l~~c~~  384 (606)
                       ..|.++.. +++|++|++++|.....-+..+.+   ....++|+.|++.+++.
T Consensus       254 -~lp~~l~~-l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~  305 (330)
T 1xku_A          254 -KVPGGLAD-HKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  305 (330)
T ss_dssp             -SCCTTTTT-CSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             -cCChhhcc-CCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcc
Confidence             23444433 488999999987644332232321   12357899999999873

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.86  E-value=8.8e-21  Score=185.99  Aligned_cols=264  Identities=18%  Similarity=0.185  Sum_probs=180.7

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCC-
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCR-  180 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~-  180 (606)
                      +.++.+++.+..+|... .+++++|+++++.+..++...|..+++|++|++++|.++.+ |..+.++++|++|++++|. 
T Consensus        14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~   92 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ   92 (285)
T ss_dssp             CEEECCSSCCSSCCTTC-CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred             eEEEcCcCCcccCCcCC-CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCC
Confidence            56777777777777543 45788888888888888776678888888888888888774 6778888888888888886 


Q ss_pred             CCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371          181 LKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE  257 (606)
Q Consensus       181 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~  257 (606)
                      +..  +..+..+++|++|++++|.++.+ |..+.++++|++|++++|... .++...++.+++|++|++++|.+...+. 
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~-  170 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPE-  170 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECT-
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCccc-ccCHhHhccCCCccEEECCCCcccccCH-
Confidence            666  56788888888888888888766 456778888888888886544 4444447788888888888887765553 


Q ss_pred             CCCccchHhhccCCCCCEEEEeeCCCCCC-Cccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccc
Q 007371          258 GGSNASLVELERLTKLATLEIEVADAEIL-PPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQ  335 (606)
Q Consensus       258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~  335 (606)
                             ..+..+++|++|++++|.+..+ |..+.. ++|+.|++... ......+..+..+++|+.|++++|.+.....
T Consensus       171 -------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          171 -------RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             -------HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence                   4577788888888888887655 444433 77787777332 2222222346778888999999988766544


Q ss_pred             cchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecC
Q 007371          336 ENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSC  382 (606)
Q Consensus       336 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c  382 (606)
                      .. ++.   ..++.+....+...-..|..+. ...+..++..++.+|
T Consensus       243 ~~-~~~---~~l~~~~~~~~~~~c~~p~~l~-g~~l~~l~~~~l~~C  284 (285)
T 1ozn_A          243 AR-PLW---AWLQKFRGSSSEVPCSLPQRLA-GRDLKRLAANDLQGC  284 (285)
T ss_dssp             GH-HHH---HHHHHCCSEECCCBEEESGGGT-TCBGGGSCGGGSCCC
T ss_pred             cH-HHH---HHHHhcccccCccccCCchHhC-CcChhhcCHHHhccC
Confidence            33 222   2344444444443334555443 233455555555555

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.85  E-value=5.8e-21  Score=189.39  Aligned_cols=241  Identities=20%  Similarity=0.136  Sum_probs=169.7

Q ss_pred             EEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC---CccccCCCCCcEEEeeCCC
Q 007371          104 AISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL---PSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       104 ~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~  180 (606)
                      .++.+++.+..+|.... +++++|+++++.+..+|..+|.++++|++|++++|.++.+   |..+..+++|++|++++|.
T Consensus        11 ~l~c~~~~l~~ip~~~~-~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           11 EIRCNSKGLTSVPTGIP-SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             EEECCSSCCSSCCSCCC-TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             EEEcCCCCcccCCCCCC-CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            56667777777776442 5788888888887778877777888888888888877653   5666677888888888887


Q ss_pred             CCC-CcccCCCCCCCEeeecCCcCCcccc--cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC-ccc
Q 007371          181 LKD-IAIVGQLKKLEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW-EKV  256 (606)
Q Consensus       181 ~~~-~~~i~~l~~L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~-~~~  256 (606)
                      +.. +..+..+++|++|++++|.++.++.  .+..+++|++|++++|...+..+.. ++.+++|++|++++|.+.. ..+
T Consensus        90 i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           90 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTT-TTTCTTCCEEECTTCEEGGGEEC
T ss_pred             cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhh-cccCcCCCEEECCCCccccccch
Confidence            777 6667778888888888887776654  6777888888888887655555544 7778888888888876654 222


Q ss_pred             cCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccccc
Q 007371          257 EGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQE  336 (606)
Q Consensus       257 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~  336 (606)
                              ..++.+++|++|++++|.+..++.                       ..+..+++|+.|++++|.+.+....
T Consensus       169 --------~~~~~l~~L~~L~Ls~n~l~~~~~-----------------------~~~~~l~~L~~L~L~~N~l~~~~~~  217 (306)
T 2z66_A          169 --------DIFTELRNLTFLDLSQCQLEQLSP-----------------------TAFNSLSSLQVLNMSHNNFFSLDTF  217 (306)
T ss_dssp             --------SCCTTCTTCCEEECTTSCCCEECT-----------------------TTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred             --------hHHhhCcCCCEEECCCCCcCCcCH-----------------------HHhcCCCCCCEEECCCCccCccChh
Confidence                    456777788888888777654422                       2235566777777777766432221


Q ss_pred             chhHHHhhccccceecccccCcccccccccCCCCCC-CCcEEEeecCC
Q 007371          337 NDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFP-RLKHLHVKSCS  383 (606)
Q Consensus       337 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~-~L~~L~l~~c~  383 (606)
                        .+ ..+++|+.|++++|......+..+.   .++ +|++|++++++
T Consensus       218 --~~-~~l~~L~~L~L~~N~l~~~~~~~~~---~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          218 --PY-KCLNSLQVLDYSLNHIMTSKKQELQ---HFPSSLAFLNLTQND  259 (306)
T ss_dssp             --GG-TTCTTCCEEECTTSCCCBCSSSSCC---CCCTTCCEEECTTCC
T ss_pred             --hc-cCcccCCEeECCCCCCcccCHHHHH---hhhccCCEEEccCCC
Confidence              12 2357889999988876666665554   664 89999999986

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=1.1e-20  Score=191.44  Aligned_cols=199  Identities=20%  Similarity=0.208  Sum_probs=130.5

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEe
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEIL  196 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L  196 (606)
                      .|+.....+.+++....+|..+   .++|++|++++|.++.+|. .+.++++|++|++++|.++.  +..++++++|++|
T Consensus        29 ~C~~~~~c~~~~~~l~~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (353)
T 2z80_A           29 SCDRNGICKGSSGSLNSIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHL  105 (353)
T ss_dssp             EECTTSEEECCSTTCSSCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCeEeeCCCCCcccccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEE
Confidence            4555555667777777777755   3578888888888877555 67788888888888887777  4567788888888


Q ss_pred             eecCCcCCccccc-ccCCCCCCEEecCCCcccccccH-HHhhCCCCCCEEEccCCC-CCCccccCCCccchHhhccCCCC
Q 007371          197 ILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAP-NVISKLSQLEELYMGNSF-SGWEKVEGGSNASLVELERLTKL  273 (606)
Q Consensus       197 ~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~l~~L  273 (606)
                      ++++|.++.+|.. ++++++|++|++++|.. ..+|. ..++.+++|++|++++|. +....+        ..++.+++|
T Consensus       106 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--------~~~~~l~~L  176 (353)
T 2z80_A          106 DLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQR--------KDFAGLTFL  176 (353)
T ss_dssp             ECCSSCCSSCCHHHHTTCTTCSEEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECT--------TTTTTCCEE
T ss_pred             ECCCCcCCcCCHhHhCCCccCCEEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCH--------HHccCCCCC
Confidence            8888888777765 67788888888887653 35554 336777788888877773 333332        456677777


Q ss_pred             CEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecc
Q 007371          274 ATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLE  353 (606)
Q Consensus       274 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~  353 (606)
                      ++|++++|.+..++                       +..+..+++|+.|++++|.+. .  .+..+...+++|+.|+++
T Consensus       177 ~~L~l~~n~l~~~~-----------------------~~~l~~l~~L~~L~l~~n~l~-~--~~~~~~~~~~~L~~L~L~  230 (353)
T 2z80_A          177 EELEIDASDLQSYE-----------------------PKSLKSIQNVSHLILHMKQHI-L--LLEIFVDVTSSVECLELR  230 (353)
T ss_dssp             EEEEEEETTCCEEC-----------------------TTTTTTCSEEEEEEEECSCST-T--HHHHHHHHTTTEEEEEEE
T ss_pred             CEEECCCCCcCccC-----------------------HHHHhccccCCeecCCCCccc-c--chhhhhhhcccccEEECC
Confidence            77777777665331                       122345556666666665541 1  122233334666666666


Q ss_pred             ccc
Q 007371          354 TLE  356 (606)
Q Consensus       354 ~~~  356 (606)
                      +|.
T Consensus       231 ~n~  233 (353)
T 2z80_A          231 DTD  233 (353)
T ss_dssp             SCB
T ss_pred             CCc
Confidence            654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.84  E-value=3.5e-20  Score=183.72  Aligned_cols=254  Identities=15%  Similarity=0.104  Sum_probs=199.8

Q ss_pred             CCCeEEEecCCCCcccCCcc--cccccceeeccccccccc---chhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEE
Q 007371          100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQV---SDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTL  174 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L  174 (606)
                      +.+++|++++|.+..++...  .+++|++|++++|.+..+   +..+ ..+++|++|++++|.+..+|..+..+++|++|
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence            56899999999999888753  899999999999987655   4444 67999999999999999999999999999999


Q ss_pred             EeeCCCCCC-C--cccCCCCCCCEeeecCCcCCc-ccccccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCC
Q 007371          175 CLDYCRLKD-I--AIVGQLKKLEILILARSTIKQ-LPLEIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNS  249 (606)
Q Consensus       175 ~l~~~~~~~-~--~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~  249 (606)
                      ++++|.+.. +  ..+..+++|++|++++|.+.. .|..+..+++|++|++++|...+ .+|.. ++.+++|++|++++|
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~Ls~n  185 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQC  185 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTS
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH-HhhCcCCCEEECCCC
Confidence            999999877 3  579999999999999998884 45668899999999999987665 45655 899999999999999


Q ss_pred             CCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccc-c-ccCCcEEEEEeCCCCCCCCCCcccCC-CCCcEEEec
Q 007371          250 FSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNF-V-SVELQRYRIRIGDESEDEFDPLLVKS-EAPRLMMLK  326 (606)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~-~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~L~  326 (606)
                      .+....+        ..++.+++|++|++++|.+..++... . .++|+.|++. ++......+..+..+ ++|+.|+++
T Consensus       186 ~l~~~~~--------~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~~~~~L~~L~L~  256 (306)
T 2z66_A          186 QLEQLSP--------TAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS-LNHIMTSKKQELQHFPSSLAFLNLT  256 (306)
T ss_dssp             CCCEECT--------TTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT-TSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred             CcCCcCH--------HHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC-CCCCcccCHHHHHhhhccCCEEEcc
Confidence            8877654        67889999999999999998877643 2 3899999984 344444455566776 489999999


Q ss_pred             CcccccccccchhHHHhhccccceecccccCcccccccc
Q 007371          327 GLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHEL  365 (606)
Q Consensus       327 ~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l  365 (606)
                      +|.+.+..... ++..++...+.+.+..+...-..|..+
T Consensus       257 ~N~~~~~c~~~-~~~~~l~~~~~~~~~~~~~~C~~p~~~  294 (306)
T 2z66_A          257 QNDFACTCEHQ-SFLQWIKDQRQLLVEVERMECATPSDK  294 (306)
T ss_dssp             TCCEECSGGGH-HHHHHHHHTGGGBSCGGGCBEEESGGG
T ss_pred             CCCeecccChH-HHHHHHHhhhhhhccccccccCCchhh
Confidence            99886654432 334444556655554433333334433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.84  E-value=4.7e-20  Score=193.22  Aligned_cols=242  Identities=20%  Similarity=0.168  Sum_probs=180.6

Q ss_pred             CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCC
Q 007371          102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~  180 (606)
                      ...++.++..+..+|.... +++++|++++|.+..++...|.++++|++|++++|.++. .|..+.++++|++|++++|.
T Consensus        56 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~  134 (452)
T 3zyi_A           56 FSKVVCTRRGLSEVPQGIP-SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW  134 (452)
T ss_dssp             SCEEECCSSCCSSCCSCCC-TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CcEEEECCCCcCccCCCCC-CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc
Confidence            4567777777777776442 578888888888888876667888889999999888888 44678888889999998888


Q ss_pred             CCC-C-cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371          181 LKD-I-AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE  257 (606)
Q Consensus       181 ~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~  257 (606)
                      ++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+..+.++...+..+++|++|++++|.+...+  
T Consensus       135 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--  212 (452)
T 3zyi_A          135 LTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP--  212 (452)
T ss_dssp             CSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC--
T ss_pred             CCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc--
Confidence            877 3 558888889999998888887765 57788888999888887788887766888888888888888776543  


Q ss_pred             CCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccc
Q 007371          258 GGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEN  337 (606)
Q Consensus       258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~  337 (606)
                              .+..+++|++|++++|.+..++..                       .+..+++|+.|++++|.+....+  
T Consensus       213 --------~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~--  259 (452)
T 3zyi_A          213 --------NLTPLVGLEELEMSGNHFPEIRPG-----------------------SFHGLSSLKKLWVMNSQVSLIER--  259 (452)
T ss_dssp             --------CCTTCTTCCEEECTTSCCSEECGG-----------------------GGTTCTTCCEEECTTSCCCEECT--
T ss_pred             --------cccccccccEEECcCCcCcccCcc-----------------------cccCccCCCEEEeCCCcCceECH--
Confidence                    367788888888888877655332                       24556677777777766643221  


Q ss_pred             hhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          338 DGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       338 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      ..+. .+++|+.|++++|.. +.++...  +..+++|++|++++++
T Consensus       260 ~~~~-~l~~L~~L~L~~N~l-~~~~~~~--~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          260 NAFD-GLASLVELNLAHNNL-SSLPHDL--FTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TTTT-TCTTCCEEECCSSCC-SCCCTTS--STTCTTCCEEECCSSC
T ss_pred             HHhc-CCCCCCEEECCCCcC-CccChHH--hccccCCCEEEccCCC
Confidence            1222 247888888888744 4444322  3378999999999886

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.84  E-value=5e-20  Score=192.32  Aligned_cols=242  Identities=20%  Similarity=0.201  Sum_probs=179.3

Q ss_pred             CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCC
Q 007371          102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~  180 (606)
                      .+.++..+..+..+|.... ++++.|++++|.+..++...|.++++|++|++++|.+..++ ..|.++++|++|++++|.
T Consensus        45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~  123 (440)
T 3zyj_A           45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR  123 (440)
T ss_dssp             SCEEECCSCCCSSCCSCCC-TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC
T ss_pred             CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc
Confidence            4567777777777776543 57888888888888887766788888888888888888744 678888888888888888


Q ss_pred             CCC-C-cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371          181 LKD-I-AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE  257 (606)
Q Consensus       181 ~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~  257 (606)
                      ++. + ..+..+++|++|++++|.++.+|. .+.++++|++|++++|+..+.++...+.++++|++|++++|.+...+  
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~--  201 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP--  201 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC--
T ss_pred             CCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc--
Confidence            887 3 568888888888888888887765 57788888888888877777777766788888888888888776543  


Q ss_pred             CCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccc
Q 007371          258 GGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEN  337 (606)
Q Consensus       258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~  337 (606)
                              .+..+++|++|++++|.+..++..                       .+..+++|+.|++++|.+....+  
T Consensus       202 --------~~~~l~~L~~L~Ls~N~l~~~~~~-----------------------~~~~l~~L~~L~L~~n~l~~~~~--  248 (440)
T 3zyj_A          202 --------NLTPLIKLDELDLSGNHLSAIRPG-----------------------SFQGLMHLQKLWMIQSQIQVIER--  248 (440)
T ss_dssp             --------CCTTCSSCCEEECTTSCCCEECTT-----------------------TTTTCTTCCEEECTTCCCCEECT--
T ss_pred             --------ccCCCcccCEEECCCCccCccChh-----------------------hhccCccCCEEECCCCceeEECh--
Confidence                    367788888888888877654322                       23556667777777766533221  


Q ss_pred             hhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          338 DGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       338 ~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      ..+. .+++|+.|+|++|... .++...  +..+++|+.|++++++
T Consensus       249 ~~~~-~l~~L~~L~L~~N~l~-~~~~~~--~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          249 NAFD-NLQSLVEINLAHNNLT-LLPHDL--FTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TSST-TCTTCCEEECTTSCCC-CCCTTT--TSSCTTCCEEECCSSC
T ss_pred             hhhc-CCCCCCEEECCCCCCC-ccChhH--hccccCCCEEEcCCCC
Confidence            1122 2478888888887544 444322  3378999999999887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.84  E-value=1.7e-22  Score=219.81  Aligned_cols=404  Identities=16%  Similarity=0.100  Sum_probs=229.4

Q ss_pred             CCCeEEEecCCCC-ccc---CC------------cc-cccccceeecccccccccc-hhHhcCCCCCcEEEeeCC-cCcc
Q 007371          100 KDPIAISLTYGGI-QVL---PE------------RL-QCPCLELLHTEGDGSMQVS-DHFFKGTEGLKVLNFTRI-HFSS  160 (606)
Q Consensus       100 ~~l~~L~l~~~~~-~~l---~~------------~~-~l~~L~~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~-~l~~  160 (606)
                      +.++.|+++++.. ..+   |.            .. .+++|++|+++++.+.... ..+...+++|++|++++| .+..
T Consensus        66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  145 (594)
T 2p1m_B           66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFST  145 (594)
T ss_dssp             TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEH
T ss_pred             CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCH
Confidence            6688888888653 211   11            11 4677888887777654332 233235788888888887 5544


Q ss_pred             --CCccccCCCCCcEEEeeCCCCCC--Cc----ccCCCCCCCEeeecCCc--CC--cccccccCCCCCCEEecCCCcccc
Q 007371          161 --LPSSLGCLINLQTLCLDYCRLKD--IA----IVGQLKKLEILILARST--IK--QLPLEIGQLTRLQLLDLSNCWLLE  228 (606)
Q Consensus       161 --lp~~~~~l~~L~~L~l~~~~~~~--~~----~i~~l~~L~~L~l~~~~--l~--~lp~~i~~L~~L~~L~l~~~~~~~  228 (606)
                        ++..+.++++|++|++++|.+++  +.    ....+++|++|++++|.  +.  .++..+.++++|++|++++|....
T Consensus       146 ~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~  225 (594)
T 2p1m_B          146 DGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE  225 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH
T ss_pred             HHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH
Confidence              55555678888888888887654  22    22366788888888875  22  233334557888888888875555


Q ss_pred             cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEE-EEeeCCCCCCCcccc-ccCCcEEEEEeCCCC
Q 007371          229 VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATL-EIEVADAEILPPNFV-SVELQRYRIRIGDES  306 (606)
Q Consensus       229 ~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L-~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~  306 (606)
                      .++.. +.++++|++|++..+.......  ........++++++|+.| .+.......++.... .++|+.|++..+...
T Consensus       226 ~l~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~  302 (594)
T 2p1m_B          226 KLATL-LQRAPQLEELGTGGYTAEVRPD--VYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQ  302 (594)
T ss_dssp             HHHHH-HHHCTTCSEEECSBCCCCCCHH--HHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCC
T ss_pred             HHHHH-HhcCCcceEcccccccCccchh--hHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCC
Confidence            56555 7788888888876553211000  011123466777788877 333332233443332 267777777433311


Q ss_pred             CCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceeccc--------ccCccccc-ccccCCCCCCCCcEE
Q 007371          307 EDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLET--------LEGVQSVV-HELDDGEGFPRLKHL  377 (606)
Q Consensus       307 ~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~--------~~~~~~~~-~~l~~~~~l~~L~~L  377 (606)
                      ...+...+..+++|+.|++.+| . +... ...+...+++|++|++.+        +..++... ..+  ..++++|++|
T Consensus       303 ~~~l~~~~~~~~~L~~L~l~~~-~-~~~~-l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l--~~~~~~L~~L  377 (594)
T 2p1m_B          303 SYDLVKLLCQCPKLQRLWVLDY-I-EDAG-LEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESV  377 (594)
T ss_dssp             HHHHHHHHTTCTTCCEEEEEGG-G-HHHH-HHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHH--HHHCTTCCEE
T ss_pred             HHHHHHHHhcCCCcCEEeCcCc-c-CHHH-HHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHH--HHhchhHHHH
Confidence            1112222456777777777775 1 1111 112333457777777743        22222211 111  1136777777


Q ss_pred             EeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceecc-----ccccccccccC--CCCCccccCC
Q 007371          378 HVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLS-----HFPRLKEIWHG--QALPVSFFNN  450 (606)
Q Consensus       378 ~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~-----~~~~l~~~~~~--~~~~~~~l~~  450 (606)
                      .+ +|..++....      ..+...+|+|+.                 |++.     +|..+...+..  .......+++
T Consensus       378 ~~-~~~~l~~~~~------~~l~~~~~~L~~-----------------L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~  433 (594)
T 2p1m_B          378 LY-FCRQMTNAAL------ITIARNRPNMTR-----------------FRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKD  433 (594)
T ss_dssp             EE-EESCCCHHHH------HHHHHHCTTCCE-----------------EEEEESSTTCCCTTTCCCTHHHHHHHHHHCTT
T ss_pred             HH-hcCCcCHHHH------HHHHhhCCCcce-----------------eEeecccCCCcccccCCchhhHHHHHHhhCCC
Confidence            44 3333332100      000123455555                 8888     56666643211  0011356789


Q ss_pred             ccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccc
Q 007371          451 LFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFT  530 (606)
Q Consensus       451 L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~  530 (606)
                      |+.|++++  .+++.........+++|++|++++|. +.+.....         ....+++|++|++++|+. ..... .
T Consensus       434 L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~---------l~~~~~~L~~L~L~~n~~-~~~~~-~  499 (594)
T 2p1m_B          434 LRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHH---------VLSGCDSLRKLEIRDCPF-GDKAL-L  499 (594)
T ss_dssp             CCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHH---------HHHHCTTCCEEEEESCSC-CHHHH-H
T ss_pred             ccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHH---------HHhcCCCcCEEECcCCCC-cHHHH-H
Confidence            99999966  66665344444568999999999887 43221110         113589999999999975 33222 1


Q ss_pred             cccccCCCcceEeeccCCC
Q 007371          531 RNIIELPKLRYLTIENCPD  549 (606)
Q Consensus       531 ~~~~~~~~L~~L~i~~Cp~  549 (606)
                      .....+++|++|++++|+.
T Consensus       500 ~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          500 ANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             HTGGGGGGSSEEEEESSCC
T ss_pred             HHHHhCCCCCEEeeeCCCC
Confidence            2344578999999999975

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.83  E-value=2.8e-22  Score=211.08  Aligned_cols=158  Identities=18%  Similarity=0.163  Sum_probs=82.3

Q ss_pred             ccceeecccccccccc-hhHhcCCCCCcEEEeeCCcCc-----cCCccccCCCCCcEEEeeCCCCCC--CcccC-CCC--
Q 007371          123 CLELLHTEGDGSMQVS-DHFFKGTEGLKVLNFTRIHFS-----SLPSSLGCLINLQTLCLDYCRLKD--IAIVG-QLK--  191 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~l~-----~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~-~l~--  191 (606)
                      ++++|+++++.+...+ ..++..+++|++|++++|.++     .++..+..+++|++|++++|.+.+  +..+. .+.  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4555555555443332 222455666666666666655     244555566666666666666544  22221 233  


Q ss_pred             --CCCEeeecCCcCC-----cccccccCCCCCCEEecCCCcccccccHH----HhhCCCCCCEEEccCCCCCCccccCCC
Q 007371          192 --KLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLEVIAPN----VISKLSQLEELYMGNSFSGWEKVEGGS  260 (606)
Q Consensus       192 --~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~~p~~----~i~~l~~L~~L~l~~~~~~~~~~~~~~  260 (606)
                        +|++|++++|.++     .+|..+..+++|++|++++|......+..    .....++|++|++++|.+.....    
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~----  159 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC----  159 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH----
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH----
Confidence              4666666666655     34556666666666666665533222221    11124456666666665543221    


Q ss_pred             ccchHhhccCCCCCEEEEeeCCCC
Q 007371          261 NASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       261 ~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      ......++.+++|++|++++|.+.
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcc
Confidence            112244555666666666666553

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.82  E-value=7.9e-22  Score=214.61  Aligned_cols=375  Identities=14%  Similarity=0.083  Sum_probs=232.7

Q ss_pred             cccccceeecccccc-ccc---c-----------hhHhcCCCCCcEEEeeCCcCcc-CCcccc-CCCCCcEEEeeCCC-C
Q 007371          120 QCPCLELLHTEGDGS-MQV---S-----------DHFFKGTEGLKVLNFTRIHFSS-LPSSLG-CLINLQTLCLDYCR-L  181 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~-~~~---~-----------~~~~~~l~~L~~L~l~~~~l~~-lp~~~~-~l~~L~~L~l~~~~-~  181 (606)
                      .+++|++|.+.++.. .++   |           ..++..+++|++|+++++.++. .+..+. .+++|++|++++|. +
T Consensus        64 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~  143 (594)
T 2p1m_B           64 RFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGF  143 (594)
T ss_dssp             HCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEE
T ss_pred             hCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCC
Confidence            667899999777542 111   1           2334578999999999998876 444554 68999999999994 5


Q ss_pred             CC--C-cccCCCCCCCEeeecCCcCCc-----ccccccCCCCCCEEecCCCccccccc----HHHhhCCCCCCEEEccCC
Q 007371          182 KD--I-AIVGQLKKLEILILARSTIKQ-----LPLEIGQLTRLQLLDLSNCWLLEVIA----PNVISKLSQLEELYMGNS  249 (606)
Q Consensus       182 ~~--~-~~i~~l~~L~~L~l~~~~l~~-----lp~~i~~L~~L~~L~l~~~~~~~~~p----~~~i~~l~~L~~L~l~~~  249 (606)
                      +.  + ..+.++++|++|++++|.++.     ++.....+++|++|++++|.  ..+.    ...+.++++|++|++++|
T Consensus       144 ~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          144 STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            54  3 444589999999999997653     34444578899999999875  2222    222456799999999988


Q ss_pred             CCCCccccCCCccchHhhccCCCCCEEEEeeCCC-------CCCCcccc-ccCCcEEEEEeCCCCCCCCCCcccCCCCCc
Q 007371          250 FSGWEKVEGGSNASLVELERLTKLATLEIEVADA-------EILPPNFV-SVELQRYRIRIGDESEDEFDPLLVKSEAPR  321 (606)
Q Consensus       250 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  321 (606)
                      .....        ....+..+++|++|++..+..       ..++..+. .++|+.+.- ........++.....+++|+
T Consensus       222 ~~~~~--------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~-~~~~~~~~l~~~~~~~~~L~  292 (594)
T 2p1m_B          222 VPLEK--------LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSG-FWDAVPAYLPAVYSVCSRLT  292 (594)
T ss_dssp             SCHHH--------HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEEC-CBTCCGGGGGGGHHHHTTCC
T ss_pred             CcHHH--------HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccC-CcccchhhHHHHHHhhCCCC
Confidence            32221        236778899999999765532       12222222 267777631 11122222333344678999


Q ss_pred             EEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC--------CceEeccccc
Q 007371          322 LMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS--------EILHIVGSVR  393 (606)
Q Consensus       322 ~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~--------~l~~~~~~~~  393 (606)
                      .|++++|.+. ... ...+...+++|++|++.+|.....++...   ..+++|++|++.+|.        .+....    
T Consensus       293 ~L~L~~~~l~-~~~-l~~~~~~~~~L~~L~l~~~~~~~~l~~l~---~~~~~L~~L~L~~~~~~g~~~~~~l~~~~----  363 (594)
T 2p1m_B          293 TLNLSYATVQ-SYD-LVKLLCQCPKLQRLWVLDYIEDAGLEVLA---STCKDLRELRVFPSEPFVMEPNVALTEQG----  363 (594)
T ss_dssp             EEECTTCCCC-HHH-HHHHHTTCTTCCEEEEEGGGHHHHHHHHH---HHCTTCCEEEEECSCTTCSSCSSCCCHHH----
T ss_pred             EEEccCCCCC-HHH-HHHHHhcCCCcCEEeCcCccCHHHHHHHH---HhCCCCCEEEEecCcccccccCCCCCHHH----
Confidence            9999997742 211 11223346889999999873322233222   257899999996642        222100    


Q ss_pred             cccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEec-----cCCCcccccch
Q 007371          394 REEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVD-----DCTNMSSAIPA  468 (606)
Q Consensus       394 ~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~-----~C~~L~~l~~~  468 (606)
                        ...+...+++|+.                 |. .+|.++.......  -...+++|+.|++.     +|+.+++.+..
T Consensus       364 --l~~l~~~~~~L~~-----------------L~-~~~~~l~~~~~~~--l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~  421 (594)
T 2p1m_B          364 --LVSVSMGCPKLES-----------------VL-YFCRQMTNAALIT--IARNRPNMTRFRLCIIEPKAPDYLTLEPLD  421 (594)
T ss_dssp             --HHHHHHHCTTCCE-----------------EE-EEESCCCHHHHHH--HHHHCTTCCEEEEEESSTTCCCTTTCCCTH
T ss_pred             --HHHHHHhchhHHH-----------------HH-HhcCCcCHHHHHH--HHhhCCCcceeEeecccCCCcccccCCchh
Confidence              0000122445555                 84 4555554322111  01247899999999     78888855221


Q ss_pred             ----hHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEee
Q 007371          469 ----NLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTI  544 (606)
Q Consensus       469 ----~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i  544 (606)
                          ..+.++++|++|++++  .+.+......         ...+++|+.|++.+|. ++.... ......+++|++|++
T Consensus       422 ~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l---------~~~~~~L~~L~L~~~~-i~~~~~-~~l~~~~~~L~~L~L  488 (594)
T 2p1m_B          422 IGFGAIVEHCKDLRRLSLSG--LLTDKVFEYI---------GTYAKKMEMLSVAFAG-DSDLGM-HHVLSGCDSLRKLEI  488 (594)
T ss_dssp             HHHHHHHHHCTTCCEEECCS--SCCHHHHHHH---------HHHCTTCCEEEEESCC-SSHHHH-HHHHHHCTTCCEEEE
T ss_pred             hHHHHHHhhCCCccEEeecC--cccHHHHHHH---------HHhchhccEeeccCCC-CcHHHH-HHHHhcCCCcCEEEC
Confidence                2367889999999966  4443221110         1148899999999985 433221 011245899999999


Q ss_pred             ccCCC
Q 007371          545 ENCPD  549 (606)
Q Consensus       545 ~~Cp~  549 (606)
                      ++|+-
T Consensus       489 ~~n~~  493 (594)
T 2p1m_B          489 RDCPF  493 (594)
T ss_dssp             ESCSC
T ss_pred             cCCCC
Confidence            99984

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.82  E-value=1.5e-18  Score=186.60  Aligned_cols=158  Identities=20%  Similarity=0.175  Sum_probs=121.8

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      ..++.|++++|.+..+|.... ++|++|++++|.+..+|.    .+++|++|++++|.++.+|.   .+++|++|++++|
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N  111 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSN  111 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCCCSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSC
T ss_pred             CCCcEEEecCCCcCccChhhC-CCCcEEEecCCCCCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCC
Confidence            568899999999988887655 788889988888888776    47888999999988888876   6788888888888


Q ss_pred             CCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371          180 RLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG  258 (606)
Q Consensus       180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~  258 (606)
                      .++. |.   .+.+|++|++++|+++.+|..   +++|++|++++|.. ..+|.    .+++|+.|++++|.+...+   
T Consensus       112 ~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l-~~l~~----~~~~L~~L~L~~N~l~~l~---  177 (622)
T 3g06_A          112 PLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL-ASLPA----LPSELCKLWAYNNQLTSLP---  177 (622)
T ss_dssp             CCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC-SCCCC----CCTTCCEEECCSSCCSCCC---
T ss_pred             cCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC-CCcCC----ccCCCCEEECCCCCCCCCc---
Confidence            8887 44   567888888888888888864   47888888888753 44553    3467888888888766543   


Q ss_pred             CCccchHhhccCCCCCEEEEeeCCCCCCCc
Q 007371          259 GSNASLVELERLTKLATLEIEVADAEILPP  288 (606)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  288 (606)
                               ..+++|+.|++++|.+..+|.
T Consensus       178 ---------~~~~~L~~L~Ls~N~l~~l~~  198 (622)
T 3g06_A          178 ---------MLPSGLQELSVSDNQLASLPT  198 (622)
T ss_dssp             ---------CCCTTCCEEECCSSCCSCCCC
T ss_pred             ---------ccCCCCcEEECCCCCCCCCCC
Confidence                     235678888888877766554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=1.4e-20  Score=187.43  Aligned_cols=218  Identities=14%  Similarity=0.044  Sum_probs=141.8

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA  199 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~  199 (606)
                      .+++|++|++++|.+..++...|..+++|++|++++|.++..+. +..+++|++|++++|.++..   ...++|++|+++
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l---~~~~~L~~L~l~  107 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQEL---LVGPSIETLHAA  107 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEE---EECTTCCEEECC
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccc---cCCCCcCEEECC
Confidence            44567777777777666665556777777777777777766443 67777777777777766551   123677777777


Q ss_pred             CCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhh-ccCCCCCEEEE
Q 007371          200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVEL-ERLTKLATLEI  278 (606)
Q Consensus       200 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l-~~l~~L~~L~l  278 (606)
                      +|.++.++..  .+++|++|++++|...+..+.. ++.+++|++|++++|.+....+        ..+ +.+++|++|++
T Consensus       108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDTVNF--------AELAASSDTLEHLNL  176 (317)
T ss_dssp             SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBC-TGGGSSEEEEECTTSCCCEEEG--------GGGGGGTTTCCEEEC
T ss_pred             CCccCCcCcc--ccCCCCEEECCCCCCCCccchh-hhccCCCCEEECCCCCCCcccH--------HHHhhccCcCCEEEC
Confidence            7777766543  3567777777776544333323 6667777777777776655443        333 35677777777


Q ss_pred             eeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCc
Q 007371          279 EVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGV  358 (606)
Q Consensus       279 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  358 (606)
                      ++|.+..++..                         ..+++|+.|++++|.+.+ +  +..+. .+++|+.|++++|. +
T Consensus       177 ~~N~l~~~~~~-------------------------~~l~~L~~L~Ls~N~l~~-l--~~~~~-~l~~L~~L~L~~N~-l  226 (317)
T 3o53_A          177 QYNFIYDVKGQ-------------------------VVFAKLKTLDLSSNKLAF-M--GPEFQ-SAAGVTWISLRNNK-L  226 (317)
T ss_dssp             TTSCCCEEECC-------------------------CCCTTCCEEECCSSCCCE-E--CGGGG-GGTTCSEEECTTSC-C
T ss_pred             CCCcCcccccc-------------------------cccccCCEEECCCCcCCc-c--hhhhc-ccCcccEEECcCCc-c
Confidence            77766544322                         235677777777776643 2  22233 35889999999874 4


Q ss_pred             ccccccccCCCCCCCCcEEEeecCCCc
Q 007371          359 QSVVHELDDGEGFPRLKHLHVKSCSEI  385 (606)
Q Consensus       359 ~~~~~~l~~~~~l~~L~~L~l~~c~~l  385 (606)
                      +.+|..+.   .+++|++|++++++-.
T Consensus       227 ~~l~~~~~---~l~~L~~L~l~~N~~~  250 (317)
T 3o53_A          227 VLIEKALR---FSQNLEHFDLRGNGFH  250 (317)
T ss_dssp             CEECTTCC---CCTTCCEEECTTCCCB
T ss_pred             cchhhHhh---cCCCCCEEEccCCCcc
Confidence            46776665   8899999999998743

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.80  E-value=1.2e-18  Score=181.82  Aligned_cols=222  Identities=16%  Similarity=0.185  Sum_probs=181.4

Q ss_pred             CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l  176 (606)
                      ..++.|++++|.+..++.. . .+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .+..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            6689999999999777643 3 89999999999999999988888999999999999999999765 6899999999999


Q ss_pred             eCCCCCC--CcccCCCCCCCEeeecCC-cCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCC
Q 007371          177 DYCRLKD--IAIVGQLKKLEILILARS-TIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG  252 (606)
Q Consensus       177 ~~~~~~~--~~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~  252 (606)
                      ++|.+..  +..+.++++|++|++++| .+..+|. .+.++++|++|++++|. +..+|.  +..+++|++|++++|.+.
T Consensus       144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~Ls~N~l~  220 (440)
T 3zyj_A          144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN--LTPLIKLDELDLSGNHLS  220 (440)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC--CTTCSSCCEEECTTSCCC
T ss_pred             CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc--cCCCcccCEEECCCCccC
Confidence            9999988  468999999999999995 6777765 58899999999999975 457775  899999999999999988


Q ss_pred             CccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccc
Q 007371          253 WEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEK  330 (606)
Q Consensus       253 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  330 (606)
                      ...+        ..+..+++|++|++.+|.+..++....  .++|+.|++. ++......+..+..+++|+.|+|++|.+
T Consensus       221 ~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          221 AIRP--------GSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA-HNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             EECT--------TTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECT-TSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             ccCh--------hhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECC-CCCCCccChhHhccccCCCEEEcCCCCc
Confidence            7765        778999999999999999887655432  2777777773 2333333334456677777777777766


Q ss_pred             ccc
Q 007371          331 VSI  333 (606)
Q Consensus       331 ~~~  333 (606)
                      ...
T Consensus       292 ~Cd  294 (440)
T 3zyj_A          292 NCN  294 (440)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=1.8e-18  Score=168.69  Aligned_cols=223  Identities=16%  Similarity=0.196  Sum_probs=159.2

Q ss_pred             EEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC
Q 007371          105 ISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD  183 (606)
Q Consensus       105 L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~  183 (606)
                      ++.....+..+|.... +++++|+++++.+..++...|.++++|++|++++|.++.++ ..+.++++|++|++++|.++.
T Consensus        12 ~~c~~~~l~~ip~~l~-~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   90 (276)
T 2z62_A           12 YQCMELNFYKIPDNLP-FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS   90 (276)
T ss_dssp             EECTTSCCSSCCSSSC-TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE
T ss_pred             EEecCCCccccCCCCC-CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCc
Confidence            3444455566665432 46888888888888887766788888899999888888854 467888889999998888877


Q ss_pred             --CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccc-cccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          184 --IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLE-VIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       184 --~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~-~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                        +..+.++++|++|++++|.+..++. .++++++|++|++++|.... .+|.. ++.+++|++|++++|.+...++   
T Consensus        91 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~-~~~l~~L~~L~Ls~N~l~~~~~---  166 (276)
T 2z62_A           91 LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY-FSNLTNLEHLDLSSNKIQSIYC---  166 (276)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG-GGGCTTCCEEECCSSCCCEECG---
T ss_pred             cChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh-hccCCCCCEEECCCCCCCcCCH---
Confidence              4678888889999998888887765 67888889999888876544 35666 8888889999988888766543   


Q ss_pred             CccchHhhccCCCCC-EEEEeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccc
Q 007371          260 SNASLVELERLTKLA-TLEIEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQ  335 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~  335 (606)
                        ..+..+..++.|. +|++++|.+..++..... .+|+.|++..+ ......+..+..+++|+.|++++|.+.+..+
T Consensus       167 --~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          167 --TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             --GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             --HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccccCC
Confidence              1223344444444 788888888777655433 57777777332 2332223345677888888888887765544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.80  E-value=5.6e-20  Score=182.55  Aligned_cols=243  Identities=15%  Similarity=0.096  Sum_probs=169.1

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeeccccccc--ccchhHh------cCCCCCcEEEeeCCcCcc-CCccc--cCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSM--QVSDHFF------KGTEGLKVLNFTRIHFSS-LPSSL--GCL  168 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~--~~~~~~~------~~l~~L~~L~l~~~~l~~-lp~~~--~~l  168 (606)
                      ..++.+++++|.+ .+|.... ..++.|+++++.+.  .++..+.      .++++|++|++++|.++. +|..+  +.+
T Consensus        43 ~~L~~l~l~~n~l-~~p~~~~-~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           43 RSLEYLLKRVDTE-ADLGQFT-DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             EECTTHHHHCCTT-CCCHHHH-HHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             CCceeEeeccccc-ccHHHHH-HHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcC
Confidence            4466667777777 6665431 12777787777653  3454431      268889999999998885 77766  888


Q ss_pred             CCCcEEEeeCCCCCC-CcccCCC-----CCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCccccc--ccHHHh--hC
Q 007371          169 INLQTLCLDYCRLKD-IAIVGQL-----KKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEV--IAPNVI--SK  237 (606)
Q Consensus       169 ~~L~~L~l~~~~~~~-~~~i~~l-----~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~--~p~~~i--~~  237 (606)
                      ++|++|++++|.+++ |..++.+     ++|++|++++|++..+| ..++++++|++|++++|...+.  ++.. +  +.
T Consensus       121 ~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA-LCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH-SCTTS
T ss_pred             CCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH-HHhcc
Confidence            899999999988887 6666666     88999999999888776 6788889999999988776554  2333 4  78


Q ss_pred             CCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCC
Q 007371          238 LSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKS  317 (606)
Q Consensus       238 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  317 (606)
                      +++|++|++++|.+.....     .....+..+++|++|++++|.+...+..                      ..+..+
T Consensus       200 l~~L~~L~L~~N~l~~~~~-----~~~~~~~~l~~L~~L~Ls~N~l~~~~~~----------------------~~~~~l  252 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSG-----VCSALAAARVQLQGLDLSHNSLRDAAGA----------------------PSCDWP  252 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHH-----HHHHHHHTTCCCSEEECTTSCCCSSCCC----------------------SCCCCC
T ss_pred             CCCCCEEECCCCcCcchHH-----HHHHHHhcCCCCCEEECCCCcCCcccch----------------------hhhhhc
Confidence            8899999998887763321     0013345778888998888887654311                      112335


Q ss_pred             CCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          318 EAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       318 ~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      ++|+.|++++|.+. .+  |.++.   ++|++|++++|.. +.+|. +.   .+++|++|++++++
T Consensus       253 ~~L~~L~Ls~N~l~-~i--p~~~~---~~L~~L~Ls~N~l-~~~p~-~~---~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          253 SQLNSLNLSFTGLK-QV--PKGLP---AKLSVLDLSYNRL-DRNPS-PD---ELPQVGNLSLKGNP  307 (312)
T ss_dssp             TTCCEEECTTSCCS-SC--CSSCC---SEEEEEECCSSCC-CSCCC-TT---TSCEEEEEECTTCT
T ss_pred             CCCCEEECCCCccC-hh--hhhcc---CCceEEECCCCCC-CCChh-Hh---hCCCCCEEeccCCC
Confidence            67777777777764 33  32332   6888888888743 44455 44   88999999998875

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.80  E-value=1.6e-18  Score=181.50  Aligned_cols=222  Identities=18%  Similarity=0.182  Sum_probs=179.7

Q ss_pred             CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l  176 (606)
                      ..++.|++++|.+..++.. . .+++|++|++++|.+..++...|.++++|++|++++|.++.+|. .+.++++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            5789999999999777543 3 89999999999999998887778999999999999999999665 4889999999999


Q ss_pred             eCCCCCC-C-cccCCCCCCCEeeecCC-cCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCC
Q 007371          177 DYCRLKD-I-AIVGQLKKLEILILARS-TIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG  252 (606)
Q Consensus       177 ~~~~~~~-~-~~i~~l~~L~~L~l~~~-~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~  252 (606)
                      ++|.+.. + ..+.++++|++|++++| .+..+|. .+..+++|++|++++|.. ..+|.  +..+++|++|++++|.+.
T Consensus       155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l-~~~~~--~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNI-KDMPN--LTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCC-SSCCC--CTTCTTCCEEECTTSCCS
T ss_pred             CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcc-ccccc--ccccccccEEECcCCcCc
Confidence            9999988 4 68899999999999995 6777765 588999999999999764 45665  899999999999999988


Q ss_pred             CccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcc-cc-ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccc
Q 007371          253 WEKVEGGSNASLVELERLTKLATLEIEVADAEILPPN-FV-SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEK  330 (606)
Q Consensus       253 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~  330 (606)
                      ...+        ..+.++++|++|++++|.+..++.. +. .++|+.|++.. +......+..+..+++|+.|+|++|.+
T Consensus       232 ~~~~--------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          232 EIRP--------GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH-NNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             EECG--------GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             ccCc--------ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC-CcCCccChHHhccccCCCEEEccCCCc
Confidence            7765        7889999999999999998766543 22 27777777733 233333334456677777777777766


Q ss_pred             ccc
Q 007371          331 VSI  333 (606)
Q Consensus       331 ~~~  333 (606)
                      ...
T Consensus       303 ~Cd  305 (452)
T 3zyi_A          303 NCD  305 (452)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            444

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.79  E-value=5.6e-18  Score=164.41  Aligned_cols=200  Identities=22%  Similarity=0.288  Sum_probs=147.3

Q ss_pred             CCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCcc-ccCCCCCcEEEeeCC
Q 007371          101 DPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSS-LGCLINLQTLCLDYC  179 (606)
Q Consensus       101 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~  179 (606)
                      ..+.++++++.+..+|.... +++++|+++++.+..++...|.++++|++|++++|.++.+|.. +.++++|++|++++|
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~-~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n   95 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP-ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN   95 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC-TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred             CCCEEEccCCCCCccCCCCC-CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence            45678888888877776443 5788888888888877776677888888888888888876654 477888888888888


Q ss_pred             CCCC-C-cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371          180 RLKD-I-AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV  256 (606)
Q Consensus       180 ~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~  256 (606)
                      .+.. + ..+..+++|++|++++|.++.+|. .++.+++|++|++++|. +..+|...++.+++|++|++++|.+...++
T Consensus        96 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A           96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCc-CCccCHhHccCCcccceeEecCCcCcEeCh
Confidence            8777 3 566788888888888888887664 35788888888888865 445555547788888888888887766654


Q ss_pred             cCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371          257 EGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI  333 (606)
Q Consensus       257 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~  333 (606)
                              ..+..+++|++|++++|.+..+|..                       .+..+++|+.|++++|.+...
T Consensus       175 --------~~~~~l~~L~~L~L~~N~l~~~~~~-----------------------~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          175 --------GAFDKLTELKTLKLDNNQLKRVPEG-----------------------AFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             --------TTTTTCTTCCEEECCSSCCSCCCTT-----------------------TTTTCTTCCEEECCSSCBCCS
T ss_pred             --------hHhccCCCcCEEECCCCcCCcCCHH-----------------------HhccccCCCEEEecCCCeeCC
Confidence                    4567778888888888777665543                       234566777777887766444

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.79  E-value=7.9e-21  Score=199.94  Aligned_cols=384  Identities=18%  Similarity=0.117  Sum_probs=185.2

Q ss_pred             CeEEEecCCCCcccC--Ccc-cccccceeecccccccc-----cchhHhcCCCCCcEEEeeCCcCcc-CCccc-cCCC--
Q 007371          102 PIAISLTYGGIQVLP--ERL-QCPCLELLHTEGDGSMQ-----VSDHFFKGTEGLKVLNFTRIHFSS-LPSSL-GCLI--  169 (606)
Q Consensus       102 l~~L~l~~~~~~~l~--~~~-~l~~L~~L~~~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~-~~l~--  169 (606)
                      +++|+++++.+...+  ... .+++|++|++++|.+..     ++. .+..+++|++|++++|.+.+ .+..+ ..+.  
T Consensus         5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            455666655553222  111 45556666655555442     222 23455666666666665543 11111 2233  


Q ss_pred             --CCcEEEeeCCCCCC------CcccCCCCCCCEeeecCCcCCcc-----ccc-ccCCCCCCEEecCCCccccc----cc
Q 007371          170 --NLQTLCLDYCRLKD------IAIVGQLKKLEILILARSTIKQL-----PLE-IGQLTRLQLLDLSNCWLLEV----IA  231 (606)
Q Consensus       170 --~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~l-----p~~-i~~L~~L~~L~l~~~~~~~~----~p  231 (606)
                        +|++|++++|.++.      +..+.++++|++|++++|.+...     ... ....++|++|++++|.....    ++
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  163 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA  163 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence              46666666665552      34555566666666666655411     111 11244566666666543331    22


Q ss_pred             HHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhc-cCCCCCEEEEeeCCCCC-----CCcccc-ccCCcEEEEEeCC
Q 007371          232 PNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELE-RLTKLATLEIEVADAEI-----LPPNFV-SVELQRYRIRIGD  304 (606)
Q Consensus       232 ~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~-----~~~~~~-~~~L~~L~l~~~~  304 (606)
                      .. +..+++|++|++++|.+.....    ......+. ..++|++|++++|.+..     ++..+. .++|+.|++..+.
T Consensus       164 ~~-l~~~~~L~~L~L~~n~i~~~~~----~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          164 SV-LRAKPDFKELTVSNNDINEAGV----RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HH-HHHCTTCCEEECCSSBCHHHHH----HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HH-HhhCCCCCEEECcCCCcchHHH----HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            22 4455666666666655432211    00001111 24456666666655543     222222 2556666553221


Q ss_pred             CCCCC---C-CCcccCCCCCcEEEecCcccccccc--cchhHHHhhccccceecccccCcccccccccC--CCCCCCCcE
Q 007371          305 ESEDE---F-DPLLVKSEAPRLMMLKGLEKVSILQ--ENDGTKMLLQRTEGLWLETLEGVQSVVHELDD--GEGFPRLKH  376 (606)
Q Consensus       305 ~~~~~---~-~~~l~~~~~L~~L~L~~~~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~--~~~l~~L~~  376 (606)
                      .....   + ......+++|+.|++++|.+...-.  .+..+. .+++|++|++++|......+..+..  ....++|++
T Consensus       239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~  317 (461)
T 1z7x_W          239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKELSLAGNELGDEGARLLCETLLEPGCQLES  317 (461)
T ss_dssp             CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCE
T ss_pred             CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceEECCCCCCchHHHHHHHHHhccCCcccee
Confidence            10000   0 0112246788888888876533210  122222 2478888888887543322211110  123468999


Q ss_pred             EEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCC-CCCc-cccCCccEE
Q 007371          377 LHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQ-ALPV-SFFNNLFDL  454 (606)
Q Consensus       377 L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~~~-~~l~~L~~L  454 (606)
                      |++++|. ++....   ...+.....+++|+.                 |++.++. +....... .... ...++|++|
T Consensus       318 L~L~~n~-l~~~~~---~~l~~~l~~~~~L~~-----------------L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L  375 (461)
T 1z7x_W          318 LWVKSCS-FTAACC---SHFSSVLAQNRFLLE-----------------LQISNNR-LEDAGVRELCQGLGQPGSVLRVL  375 (461)
T ss_dssp             EECTTSC-CBGGGH---HHHHHHHHHCSSCCE-----------------EECCSSB-CHHHHHHHHHHHHTSTTCCCCEE
T ss_pred             eEcCCCC-CchHHH---HHHHHHHhhCCCccE-----------------EEccCCc-cccccHHHHHHHHcCCCCceEEE
Confidence            9999886 221100   000000223456666                 8888773 43321100 0000 125799999


Q ss_pred             EeccCCCccc----ccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccc
Q 007371          455 VVDDCTNMSS----AIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPK  522 (606)
Q Consensus       455 ~i~~C~~L~~----l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~  522 (606)
                      ++++| .+++    ..+ ..+..+++|++|++++|+ +.......-.     ...-...++|+.|.+.++..
T Consensus       376 ~L~~n-~i~~~~~~~l~-~~l~~~~~L~~L~l~~N~-i~~~~~~~l~-----~~l~~~~~~L~~L~~~~~~~  439 (461)
T 1z7x_W          376 WLADC-DVSDSSCSSLA-ATLLANHSLRELDLSNNC-LGDAGILQLV-----ESVRQPGCLLEQLVLYDIYW  439 (461)
T ss_dssp             ECTTS-CCCHHHHHHHH-HHHHHCCCCCEEECCSSS-CCHHHHHHHH-----HHHTSTTCCCCEEECTTCCC
T ss_pred             ECCCC-CCChhhHHHHH-HHHHhCCCccEEECCCCC-CCHHHHHHHH-----HHhccCCcchhheeeccccc
Confidence            99997 5664    213 335679999999999985 4432211100     00012345688888877643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.79  E-value=2.8e-18  Score=168.12  Aligned_cols=218  Identities=19%  Similarity=0.156  Sum_probs=165.7

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARS  201 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~  201 (606)
                      ++++.+++.+..+|..+   .++|++|++++|.++.+| ..+.++++|++|++++|.+..  +..+.++++|++|++++|
T Consensus        14 ~~~~c~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSSCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCcccCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            56778888888888754   678999999999999865 568999999999999999887  678999999999999999


Q ss_pred             c-CCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371          202 T-IKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       202 ~-l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      . +..+ |..+..+++|++|++++|...+..|.. ++++++|++|++++|.+...++        ..++.+++|++|+++
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~l~  161 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPD--------DTFRDLGNLTHLFLH  161 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEECC
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCCcccccCH--------hHhccCCCccEEECC
Confidence            6 8877 677899999999999998765544544 8899999999999998877664        568889999999999


Q ss_pred             eCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcc
Q 007371          280 VADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQ  359 (606)
Q Consensus       280 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (606)
                      +|.+..++...                       +..+++|+.|++++|.+.+..  +.++. .+++|+.|++++|....
T Consensus       162 ~n~l~~~~~~~-----------------------~~~l~~L~~L~l~~n~l~~~~--~~~~~-~l~~L~~L~l~~n~l~~  215 (285)
T 1ozn_A          162 GNRISSVPERA-----------------------FRGLHSLDRLLLHQNRVAHVH--PHAFR-DLGRLMTLYLFANNLSA  215 (285)
T ss_dssp             SSCCCEECTTT-----------------------TTTCTTCCEEECCSSCCCEEC--TTTTT-TCTTCCEEECCSSCCSC
T ss_pred             CCcccccCHHH-----------------------hcCccccCEEECCCCcccccC--HhHcc-CcccccEeeCCCCcCCc
Confidence            99887665531                       244556666666666553322  12222 23677777777764443


Q ss_pred             cccccccCCCCCCCCcEEEeecCC
Q 007371          360 SVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       360 ~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      ..+..+.   .+++|++|++++++
T Consensus       216 ~~~~~~~---~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          216 LPTEALA---PLRALQYLRLNDNP  236 (285)
T ss_dssp             CCHHHHT---TCTTCCEEECCSSC
T ss_pred             CCHHHcc---cCcccCEEeccCCC
Confidence            3223344   78888888888876

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=2e-19  Score=179.02  Aligned_cols=239  Identities=18%  Similarity=0.127  Sum_probs=189.3

Q ss_pred             CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371          100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD  177 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~  177 (606)
                      +++++|++++|.+..++. .. .+++|++|++++|.+..++.  +..+++|++|++++|.++.+|.    .++|++|+++
T Consensus        34 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~  107 (317)
T 3o53_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (317)
T ss_dssp             GGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEECC
Confidence            579999999999977764 33 89999999999998877766  6899999999999999987653    4899999999


Q ss_pred             CCCCCC-CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          178 YCRLKD-IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       178 ~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      +|.++. +..  .+++|++|++++|.++.++. .++.+++|++|++++|...+..+....+.+++|++|++++|.+...+
T Consensus       108 ~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~  185 (317)
T 3o53_A          108 NNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (317)
T ss_dssp             SSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc
Confidence            999988 432  37889999999999997754 78889999999999987666556553358999999999999887653


Q ss_pred             ccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371          256 VEGGSNASLVELERLTKLATLEIEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL  334 (606)
Q Consensus       256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~  334 (606)
                      .          ...+++|++|++++|.+..+|..+.. ++|+.|++..+. . ..++..+..+++|+.|++++|.+... 
T Consensus       186 ~----------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l-~~l~~~~~~l~~L~~L~l~~N~~~~~-  252 (317)
T 3o53_A          186 G----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-L-VLIEKALRFSQNLEHFDLRGNGFHCG-  252 (317)
T ss_dssp             C----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-C-CEECTTCCCCTTCCEEECTTCCCBHH-
T ss_pred             c----------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-c-cchhhHhhcCCCCCEEEccCCCccCc-
Confidence            2          33588999999999999988877654 899999884332 2 24566678888999999999887532 


Q ss_pred             ccchhHHHhhccccceecccccCccc
Q 007371          335 QENDGTKMLLQRTEGLWLETLEGVQS  360 (606)
Q Consensus       335 ~~~~~~~~~l~~L~~L~l~~~~~~~~  360 (606)
                      ..+.++.. +++|+.|++.++..++.
T Consensus       253 ~~~~~~~~-~~~L~~l~l~~~~~l~~  277 (317)
T 3o53_A          253 TLRDFFSK-NQRVQTVAKQTVKKLTG  277 (317)
T ss_dssp             HHHHHHHT-CHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHhc-cccceEEECCCchhccC
Confidence            23444443 47888888886665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.78  E-value=2.5e-18  Score=167.11  Aligned_cols=201  Identities=17%  Similarity=0.179  Sum_probs=95.7

Q ss_pred             ccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeee
Q 007371          121 CPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILIL  198 (606)
Q Consensus       121 l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l  198 (606)
                      +++|+.|.+.++.+..++.  +..+++|++|++++|.+..++ .++++++|++|++++|.++. + ..++++++|++|++
T Consensus        40 l~~L~~L~l~~~~i~~~~~--l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTT--GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             ccceeeeeeCCCCcccccc--cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            3344444444444433332  244455555555555444432 34445555555555555444 2 23445555555555


Q ss_pred             cCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEE
Q 007371          199 ARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE  277 (606)
Q Consensus       199 ~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  277 (606)
                      ++|.++.+|.. ++.+++|++|++++|... .++...++.+++|++|++++|.+...++        ..++.+++|++|+
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~  187 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPE--------GVFDKLTQLKDLR  187 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEEECCCCCcCccCH--------HHhcCCccCCEEE
Confidence            55555544432 344555555555554322 3333324455555555555554443332        3344555555555


Q ss_pred             EeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccC
Q 007371          278 IEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEG  357 (606)
Q Consensus       278 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  357 (606)
                      +++|.+..++..                       .+..+++|+.|++++|.+.+.          +++|+.|++..+..
T Consensus       188 L~~N~l~~~~~~-----------------------~~~~l~~L~~L~l~~N~~~~~----------~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          188 LYQNQLKSVPDG-----------------------VFDRLTSLQYIWLHDNPWDCT----------CPGIRYLSEWINKH  234 (272)
T ss_dssp             CCSSCCSCCCTT-----------------------TTTTCTTCCEEECCSSCBCCC----------TTTTHHHHHHHHHT
T ss_pred             CCCCcCCccCHH-----------------------HHhCCcCCCEEEccCCCcccc----------CcHHHHHHHHHHhC
Confidence            555544433321                       123344455555555444322          25667777777766


Q ss_pred             ccccccccc
Q 007371          358 VQSVVHELD  366 (606)
Q Consensus       358 ~~~~~~~l~  366 (606)
                      ...+|.+++
T Consensus       235 ~g~ip~~~~  243 (272)
T 3rfs_A          235 SGVVRNSAG  243 (272)
T ss_dssp             GGGBBCTTS
T ss_pred             CCcccCccc
Confidence            666766554

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.78  E-value=5.8e-18  Score=165.77  Aligned_cols=199  Identities=22%  Similarity=0.227  Sum_probs=142.8

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      ..++.++++++.+..+|.... ++++.|++++|.+..++...|..+++|++|++++|.++.++.. +.+++|++|++++|
T Consensus        10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N   87 (290)
T 1p9a_G           10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHN   87 (290)
T ss_dssp             TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSS
T ss_pred             CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCC
Confidence            456777888887777776543 5777888888777777666667788888888888887776554 67778888888888


Q ss_pred             CCCC-CcccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcccc
Q 007371          180 RLKD-IAIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVE  257 (606)
Q Consensus       180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~  257 (606)
                      .+.. |..+..+++|++|++++|+++.+| ..+..+++|++|++++|.. ..+|...+..+++|++|++++|.+...+. 
T Consensus        88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~l~~-  165 (290)
T 1p9a_G           88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNEL-KTLPPGLLTPTPKLEKLSLANNNLTELPA-  165 (290)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEECTTSCCSCCCT-
T ss_pred             cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCC-CccChhhcccccCCCEEECCCCcCCccCH-
Confidence            7777 667777888888888888877776 3577788888888887653 45555546777888888888887766554 


Q ss_pred             CCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371          258 GGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI  333 (606)
Q Consensus       258 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~  333 (606)
                             ..+..+++|+.|++++|.+..+|..+                        .....|+.+.+++|.....
T Consensus       166 -------~~~~~l~~L~~L~L~~N~l~~ip~~~------------------------~~~~~L~~l~L~~Np~~C~  210 (290)
T 1p9a_G          166 -------GLLNGLENLDTLLLQENSLYTIPKGF------------------------FGSHLLPFAFLHGNPWLCN  210 (290)
T ss_dssp             -------TTTTTCTTCCEEECCSSCCCCCCTTT------------------------TTTCCCSEEECCSCCBCCS
T ss_pred             -------HHhcCcCCCCEEECCCCcCCccChhh------------------------cccccCCeEEeCCCCccCc
Confidence                   45567778888888877777666553                        3344667777777665443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.78  E-value=2.1e-17  Score=177.72  Aligned_cols=235  Identities=16%  Similarity=0.093  Sum_probs=193.7

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      ++++.|++++|.+..+|.  .+++|++|++++|.+..+|.    .+++|++|++++|.++.+|.   .+.+|++|++++|
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N  131 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGN  131 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECCSS
T ss_pred             CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECCCC
Confidence            678999999999998888  67899999999999988886    68999999999999999887   6789999999999


Q ss_pred             CCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371          180 RLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG  258 (606)
Q Consensus       180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~  258 (606)
                      .++. |..   +++|++|++++|.++.+|..   +.+|+.|++++|. +..+|    ..+++|+.|++++|.+...+.  
T Consensus       132 ~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~-l~~l~----~~~~~L~~L~Ls~N~l~~l~~--  198 (622)
T 3g06_A          132 QLTSLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQ-LTSLP----MLPSGLQELSVSDNQLASLPT--  198 (622)
T ss_dssp             CCSCCCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCC----CCCTTCCEEECCSSCCSCCCC--
T ss_pred             CCCcCCCC---CCCCCEEECcCCcCCCcCCc---cCCCCEEECCCCC-CCCCc----ccCCCCcEEECCCCCCCCCCC--
Confidence            9988 543   48999999999999998863   5789999999976 44566    457899999999998876542  


Q ss_pred             CCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccch
Q 007371          259 GSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQEND  338 (606)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~  338 (606)
                                .+++|+.|++.+|.+..+|..  .++|+.|++..+.. . .++   ..+++|+.|++++|.+. .++.  
T Consensus       199 ----------~~~~L~~L~L~~N~l~~l~~~--~~~L~~L~Ls~N~L-~-~lp---~~l~~L~~L~Ls~N~L~-~lp~--  258 (622)
T 3g06_A          199 ----------LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRL-T-SLP---VLPSELKELMVSGNRLT-SLPM--  258 (622)
T ss_dssp             ----------CCTTCCEEECCSSCCSSCCCC--CTTCCEEECCSSCC-S-CCC---CCCTTCCEEECCSSCCS-CCCC--
T ss_pred             ----------ccchhhEEECcCCcccccCCC--CCCCCEEEccCCcc-C-cCC---CCCCcCcEEECCCCCCC-cCCc--
Confidence                      247899999999999988864  37899999854322 2 233   56689999999999775 3332  


Q ss_pred             hHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCC
Q 007371          339 GTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSE  384 (606)
Q Consensus       339 ~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~  384 (606)
                          .+++|+.|++++|. ++.+|..+.   ++++|+.|++++|+-
T Consensus       259 ----~~~~L~~L~Ls~N~-L~~lp~~l~---~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          259 ----LPSGLLSLSVYRNQ-LTRLPESLI---HLSSETTVNLEGNPL  296 (622)
T ss_dssp             ----CCTTCCEEECCSSC-CCSCCGGGG---GSCTTCEEECCSCCC
T ss_pred             ----ccccCcEEeCCCCC-CCcCCHHHh---hccccCEEEecCCCC
Confidence                35899999999985 457887776   899999999999973

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.77  E-value=4.1e-19  Score=176.34  Aligned_cols=217  Identities=16%  Similarity=0.145  Sum_probs=162.2

Q ss_pred             CeEEEecCCCCcc--cCCcc--------cccccceeeccccccc-ccchhHh-cCCCCCcEEEeeCCcCccCCccccCC-
Q 007371          102 PIAISLTYGGIQV--LPERL--------QCPCLELLHTEGDGSM-QVSDHFF-KGTEGLKVLNFTRIHFSSLPSSLGCL-  168 (606)
Q Consensus       102 l~~L~l~~~~~~~--l~~~~--------~l~~L~~L~~~~~~~~-~~~~~~~-~~l~~L~~L~l~~~~l~~lp~~~~~l-  168 (606)
                      ++.|++++|.+..  ++...        .+++|++|++++|.+. .+|..+| ..+++|++|++++|.++..|..++.+ 
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~  144 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQ  144 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHH
Confidence            5566777776633  33322        4789999999999876 5676654 88999999999999999988888877 


Q ss_pred             ----CCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCc---ccccc--cCCCCCCEEecCCCcccc--cccHHHh
Q 007371          169 ----INLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQ---LPLEI--GQLTRLQLLDLSNCWLLE--VIAPNVI  235 (606)
Q Consensus       169 ----~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~---lp~~i--~~L~~L~~L~l~~~~~~~--~~p~~~i  235 (606)
                          ++|++|++++|.+..  +..++++++|++|++++|++..   +|..+  +.+++|++|++++|...+  .++...+
T Consensus       145 ~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  224 (312)
T 1wwl_A          145 QWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALA  224 (312)
T ss_dssp             TTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHH
T ss_pred             HhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHH
Confidence                899999999999988  4889999999999999998763   45555  899999999999987542  4455546


Q ss_pred             hCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCccc
Q 007371          236 SKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLV  315 (606)
Q Consensus       236 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~  315 (606)
                      ..+++|++|++++|.+....+.       ..+..+++|++|++++|.+..+|..+. ++|+.|++..... .. .+. +.
T Consensus       225 ~~l~~L~~L~Ls~N~l~~~~~~-------~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l-~~-~p~-~~  293 (312)
T 1wwl_A          225 AARVQLQGLDLSHNSLRDAAGA-------PSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDLSYNRL-DR-NPS-PD  293 (312)
T ss_dssp             HTTCCCSEEECTTSCCCSSCCC-------SCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEECCSSCC-CS-CCC-TT
T ss_pred             hcCCCCCEEECCCCcCCcccch-------hhhhhcCCCCEEECCCCccChhhhhcc-CCceEEECCCCCC-CC-Chh-Hh
Confidence            7899999999999998775521       445668899999999999998887755 5666665532221 11 111 44


Q ss_pred             CCCCCcEEEecCcc
Q 007371          316 KSEAPRLMMLKGLE  329 (606)
Q Consensus       316 ~~~~L~~L~L~~~~  329 (606)
                      .+++|+.|++++|.
T Consensus       294 ~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          294 ELPQVGNLSLKGNP  307 (312)
T ss_dssp             TSCEEEEEECTTCT
T ss_pred             hCCCCCEEeccCCC
Confidence            44445555554443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=3.2e-19  Score=187.96  Aligned_cols=124  Identities=17%  Similarity=0.090  Sum_probs=53.8

Q ss_pred             ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCc
Q 007371          123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARST  202 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~  202 (606)
                      +|++|++++|.+..++...|..+++|++|++++|.++..+. ++.+++|++|++++|.++..+   ..++|++|++++|.
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N~  110 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELL---VGPSIETLHAANNN  110 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCC---CCCCcCEEECcCCc
Confidence            44444444444444443333444444444444444444222 444444444444444443310   11444444444444


Q ss_pred             CCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371          203 IKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       203 l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      ++.+|..  .+++|++|++++|...+..|.. ++.+++|++|++++|.+..
T Consensus       111 l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~  158 (487)
T 3oja_A          111 ISRVSCS--RGQGKKNIYLANNKITMLRDLD-EGCRSRVQYLDLKLNEIDT  158 (487)
T ss_dssp             CCCEEEC--CCSSCEEEECCSSCCCSGGGBC-GGGGSSEEEEECTTSCCCE
T ss_pred             CCCCCcc--ccCCCCEEECCCCCCCCCCchh-hcCCCCCCEEECCCCCCCC
Confidence            4444321  2344444444444433332322 4444444444444444443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.76  E-value=6.6e-18  Score=164.07  Aligned_cols=173  Identities=25%  Similarity=0.261  Sum_probs=152.4

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDY  178 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~  178 (606)
                      +.++.|++++|.+..++....+++|++|++++|.+..++.  +..+++|++|++++|.++.+|. .++++++|++|++++
T Consensus        41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  118 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE  118 (272)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             cceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchh--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence            8899999999999988887799999999999999888763  6899999999999999999655 479999999999999


Q ss_pred             CCCCC-C-cccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          179 CRLKD-I-AIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       179 ~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      |.++. + ..++++++|++|++++|.++.+|.. ++.+++|++|++++|... .++...++.+++|++|++++|.+...+
T Consensus       119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~  197 (272)
T 3rfs_A          119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLKSVP  197 (272)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCCccCCEEECCCCcCCccC
Confidence            99988 4 5689999999999999999988765 589999999999998755 555554789999999999999988776


Q ss_pred             ccCCCccchHhhccCCCCCEEEEeeCCC
Q 007371          256 VEGGSNASLVELERLTKLATLEIEVADA  283 (606)
Q Consensus       256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~  283 (606)
                      +        ..++.+++|+.|++.+|.+
T Consensus       198 ~--------~~~~~l~~L~~L~l~~N~~  217 (272)
T 3rfs_A          198 D--------GVFDRLTSLQYIWLHDNPW  217 (272)
T ss_dssp             T--------TTTTTCTTCCEEECCSSCB
T ss_pred             H--------HHHhCCcCCCEEEccCCCc
Confidence            5        5678999999999998865

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.75  E-value=2.3e-17  Score=160.12  Aligned_cols=176  Identities=26%  Similarity=0.333  Sum_probs=154.6

Q ss_pred             CCCeEEEecCCCCcccCCc-c-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l  176 (606)
                      ..+++|++++|.+..++.. . .+++|++|++++|.+..++..+|.++++|++|++++|.++.+|. .+..+++|++|++
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  116 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRL  116 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEEC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEEC
Confidence            5689999999999888763 3 89999999999999999999988999999999999999999665 5689999999999


Q ss_pred             eCCCCCC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371          177 DYCRLKD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      ++|.++.  +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..++...+.++++|++|++++|.+..
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          117 DRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC-cEeChhHhccCCCcCEEECCCCcCCc
Confidence            9999988  46789999999999999999988875 78999999999999764 45555548899999999999999887


Q ss_pred             ccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          254 EKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       254 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      .++        ..+..+++|+.|++.+|.+.
T Consensus       196 ~~~--------~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          196 VPE--------GAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCT--------TTTTTCTTCCEEECCSSCBC
T ss_pred             CCH--------HHhccccCCCEEEecCCCee
Confidence            664        56788999999999988753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.75  E-value=1.2e-17  Score=163.60  Aligned_cols=158  Identities=20%  Similarity=0.229  Sum_probs=126.6

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeee
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILIL  198 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l  198 (606)
                      .+++++++++.++.+..+|..+   .+++++|++++|.++. .|..+.++++|++|++++|.++..+..+.+++|++|++
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~---~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L   84 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             ccCCccEEECCCCCCCcCCCCC---CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEEC
Confidence            5678888888888888888765   4688899999998888 45678889999999999998888333478889999999


Q ss_pred             cCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEE
Q 007371          199 ARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEI  278 (606)
Q Consensus       199 ~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  278 (606)
                      ++|.++.+|..+..+++|++|++++|... .+|...++.+++|++|++++|.+...++        ..+..+++|+.|++
T Consensus        85 s~N~l~~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L  155 (290)
T 1p9a_G           85 SHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEKLSL  155 (290)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEEC
T ss_pred             CCCcCCcCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEECCCCCCCccCh--------hhcccccCCCEEEC
Confidence            99988888888888999999999887644 5554448888899999999888876654        55677888888888


Q ss_pred             eeCCCCCCCcc
Q 007371          279 EVADAEILPPN  289 (606)
Q Consensus       279 ~~~~~~~~~~~  289 (606)
                      ++|.+..+|..
T Consensus       156 ~~N~l~~l~~~  166 (290)
T 1p9a_G          156 ANNNLTELPAG  166 (290)
T ss_dssp             TTSCCSCCCTT
T ss_pred             CCCcCCccCHH
Confidence            88887766654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=1.9e-17  Score=163.73  Aligned_cols=170  Identities=18%  Similarity=0.237  Sum_probs=101.9

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      +.+++|++++|.+..++....+++|++|++++|.+..++.  +..+++|++|++++|.++.++ .+..+++|++|++++|
T Consensus        41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n  117 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (308)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence            5666666666666666544466666666666666666555  456666666666666666554 4566666666666666


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .++..+.+..+++|++|++++|.++.+|. ++.+++|++|++++|.. ..++.  +..+++|++|++++|.+...+    
T Consensus       118 ~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~~----  189 (308)
T 1h6u_A          118 QITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQV-SDLTP--LANLSKLTTLKADDNKISDIS----  189 (308)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCCG----
T ss_pred             CCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcC-CCChh--hcCCCCCCEEECCCCccCcCh----
Confidence            66653346666666666666666665554 55666666666666543 33433  566666666666666554432    


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCC
Q 007371          260 SNASLVELERLTKLATLEIEVADAEIL  286 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~  286 (606)
                            .+..+++|++|++++|.+..+
T Consensus       190 ------~l~~l~~L~~L~L~~N~l~~~  210 (308)
T 1h6u_A          190 ------PLASLPNLIEVHLKNNQISDV  210 (308)
T ss_dssp             ------GGGGCTTCCEEECTTSCCCBC
T ss_pred             ------hhcCCCCCCEEEccCCccCcc
Confidence                  155566666666666655443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.75  E-value=4.2e-17  Score=161.27  Aligned_cols=202  Identities=19%  Similarity=0.233  Sum_probs=167.3

Q ss_pred             CCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCC
Q 007371          110 GGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQ  189 (606)
Q Consensus       110 ~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~  189 (606)
                      +.+..+.....+++|++|++.++.+..++.  +..+++|++|++++|.+..++. +..+++|++|++++|.++.++.+..
T Consensus        29 ~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~  105 (308)
T 1h6u_A           29 SNVTDTVTQADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAG  105 (308)
T ss_dssp             SSTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTT
T ss_pred             CCcCceecHHHcCCcCEEEeeCCCccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcC
Confidence            344443344478899999999999888874  5889999999999999999877 9999999999999999988778999


Q ss_pred             CCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhcc
Q 007371          190 LKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELER  269 (606)
Q Consensus       190 l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~  269 (606)
                      +++|++|++++|.++.+|. +..+++|++|++++|.. ..++.  ++.+++|++|++++|.+....          .++.
T Consensus       106 l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~~----------~l~~  171 (308)
T 1h6u_A          106 LQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQI-TNISP--LAGLTNLQYLSIGNAQVSDLT----------PLAN  171 (308)
T ss_dssp             CTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCC-CCCGG--GGGCTTCCEEECCSSCCCCCG----------GGTT
T ss_pred             CCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCcc-CcCcc--ccCCCCccEEEccCCcCCCCh----------hhcC
Confidence            9999999999999998875 89999999999999764 45554  789999999999999876543          3889


Q ss_pred             CCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccc
Q 007371          270 LTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKV  331 (606)
Q Consensus       270 l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~  331 (606)
                      +++|++|++++|.+..++.....++|+.|++..+....  . ..+..+++|+.|++++|.+.
T Consensus       172 l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~--~-~~l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          172 LSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISD--V-SPLANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCB--C-GGGTTCTTCCEEEEEEEEEE
T ss_pred             CCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCc--c-ccccCCCCCCEEEccCCeee
Confidence            99999999999999888774455899999984433222  2 24788999999999998773

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.74  E-value=4.4e-18  Score=179.25  Aligned_cols=232  Identities=19%  Similarity=0.136  Sum_probs=179.1

Q ss_pred             CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEee
Q 007371          100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLD  177 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~  177 (606)
                      ++++.|++++|.+..++. .+ .+++|++|++++|.+...++  +..+++|++|++++|.++.+|.    .++|++|+++
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L~  107 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHAA  107 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE----CTTCCEEECC
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC----CCCcCEEECc
Confidence            479999999999977764 33 89999999999998877666  6899999999999999988664    3899999999


Q ss_pred             CCCCCC-CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          178 YCRLKD-IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       178 ~~~~~~-~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      +|.++. +.  ..+++|++|++++|.++.+ |..++.+++|++|++++|...+..|....+.+++|++|++++|.+...+
T Consensus       108 ~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~  185 (487)
T 3oja_A          108 NNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK  185 (487)
T ss_dssp             SSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE
T ss_pred             CCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccc
Confidence            999998 43  2468999999999999976 5578999999999999998777777763348999999999999987664


Q ss_pred             ccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371          256 VEGGSNASLVELERLTKLATLEIEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL  334 (606)
Q Consensus       256 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~  334 (606)
                      .          ...+++|+.|++++|.+..+|..+.. ++|+.|++..+. . ..++..+..+++|+.|++++|.+.+. 
T Consensus       186 ~----------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l-~~lp~~l~~l~~L~~L~l~~N~l~c~-  252 (487)
T 3oja_A          186 G----------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-L-VLIEKALRFSQNLEHFDLRGNGFHCG-  252 (487)
T ss_dssp             C----------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-C-CEECTTCCCCTTCCEEECTTCCBCHH-
T ss_pred             c----------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-C-cccchhhccCCCCCEEEcCCCCCcCc-
Confidence            2          34689999999999999888776543 778888773322 2 23555566777777777777766422 


Q ss_pred             ccchhHHHhhccccceecc
Q 007371          335 QENDGTKMLLQRTEGLWLE  353 (606)
Q Consensus       335 ~~~~~~~~~l~~L~~L~l~  353 (606)
                      ..+.++.. ++.|+.+.+.
T Consensus       253 ~~~~~~~~-l~~L~~l~~~  270 (487)
T 3oja_A          253 TLRDFFSK-NQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHTT-CHHHHHHHHH
T ss_pred             chHHHHHh-CCCCcEEecc
Confidence            22223322 3555555554

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.74  E-value=2e-17  Score=161.17  Aligned_cols=192  Identities=21%  Similarity=0.263  Sum_probs=161.7

Q ss_pred             CCCeEEEecCCCCcccCC-cc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPE-RL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l  176 (606)
                      ..+++|++++|.+..++. .. .+++|++|++++|.+..++...|..+++|++|++++|.++.++ ..+.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            568999999999988775 33 8999999999999999888877899999999999999999854 67899999999999


Q ss_pred             eCCCCCC--CcccCCCCCCCEeeecCCcCCc--ccccccCCCCCCEEecCCCcccccccHHHhhCCCCCC----EEEccC
Q 007371          177 DYCRLKD--IAIVGQLKKLEILILARSTIKQ--LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLE----ELYMGN  248 (606)
Q Consensus       177 ~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~----~L~l~~  248 (606)
                      ++|.+..  +..++++++|++|++++|.++.  +|..++++++|++|++++|...+..+.. +..+++|+    +|++++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~l~l~L~ls~  186 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD-LRVLHQMPLLNLSLDLSL  186 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG-GHHHHTCTTCCEEEECCS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH-hhhhhhccccceeeecCC
Confidence            9999888  3579999999999999999986  7889999999999999998755443333 66666666    899999


Q ss_pred             CCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcccc--ccCCcEEEEE
Q 007371          249 SFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFV--SVELQRYRIR  301 (606)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--~~~L~~L~l~  301 (606)
                      |.+...++         ......+|++|++++|.+..+|....  .++|+.|++.
T Consensus       187 n~l~~~~~---------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          187 NPMNFIQP---------GAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             SCCCEECT---------TSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECC
T ss_pred             CcccccCc---------cccCCCcccEEECCCCceeecCHhHhcccccccEEEcc
Confidence            98876653         23334489999999999998887653  3899999983

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.73  E-value=1.3e-17  Score=158.70  Aligned_cols=128  Identities=15%  Similarity=0.135  Sum_probs=57.0

Q ss_pred             ccceeecccccccccchhHhcCCCCCcEEEeeCCc-CccCCc-cccCCCCCcEEEeeC-CCCCC--CcccCCCCCCCEee
Q 007371          123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIH-FSSLPS-SLGCLINLQTLCLDY-CRLKD--IAIVGQLKKLEILI  197 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~lp~-~~~~l~~L~~L~l~~-~~~~~--~~~i~~l~~L~~L~  197 (606)
                      ++++|+++++.+..++...|..+++|++|++++|. ++.++. .+.++++|++|++++ |.++.  +..+.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            44444444444444444434444445555555443 444332 344444455555544 44444  23344444444444


Q ss_pred             ecCCcCCcccccccCCCCCC---EEecCCCcccccccHHHhhCCCCCC-EEEccCCCC
Q 007371          198 LARSTIKQLPLEIGQLTRLQ---LLDLSNCWLLEVIAPNVISKLSQLE-ELYMGNSFS  251 (606)
Q Consensus       198 l~~~~l~~lp~~i~~L~~L~---~L~l~~~~~~~~~p~~~i~~l~~L~-~L~l~~~~~  251 (606)
                      +++|.++.+|. ++.+++|+   +|++++|.....+|...+..+++|+ +|++++|.+
T Consensus       112 l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C          112 IFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             EEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             CCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC
Confidence            44444444443 44444444   4444443223333332244444444 444444433

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.73  E-value=5.8e-17  Score=155.41  Aligned_cols=174  Identities=24%  Similarity=0.315  Sum_probs=138.3

Q ss_pred             CCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCC
Q 007371          101 DPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       101 ~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~  179 (606)
                      ..++++++++.+..+|.... ++++.|+++++.+..++...|.++++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n   93 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN   93 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCeEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence            34678888888888887654 5788888888888888777678888999999999888884 445788888999999988


Q ss_pred             CCCC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccc
Q 007371          180 RLKD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKV  256 (606)
Q Consensus       180 ~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~  256 (606)
                      .++.  +..+..+++|++|++++|.++.+|.. +..+++|++|++++|.. ..+|...++.+++|++|++++|.+...++
T Consensus        94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  172 (251)
T 3m19_A           94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPH  172 (251)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC-CccCHHHcCcCcCCCEEECCCCcCCccCH
Confidence            8887  36678888899999998888888765 57888899999888754 45555447888889999988888876664


Q ss_pred             cCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          257 EGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       257 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                              ..+..+++|+.|++++|.+.
T Consensus       173 --------~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          173 --------GAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             --------TTTTTCTTCCEEECCSCCBC
T ss_pred             --------HHHhCCCCCCEEEeeCCcee
Confidence                    56778888888888888764

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.72  E-value=3e-17  Score=156.19  Aligned_cols=190  Identities=14%  Similarity=0.170  Sum_probs=160.1

Q ss_pred             CCCeEEEecCCCCcccCCc-c-cccccceeeccccc-ccccchhHhcCCCCCcEEEeeC-CcCccCC-ccccCCCCCcEE
Q 007371          100 KDPIAISLTYGGIQVLPER-L-QCPCLELLHTEGDG-SMQVSDHFFKGTEGLKVLNFTR-IHFSSLP-SSLGCLINLQTL  174 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~-~-~l~~L~~L~~~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~~~~l~~L~~L  174 (606)
                      ..++.|++++|.+..++.. . .+++|++|++++|. +..++...|.++++|++|++++ |.++.+| ..+.++++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            5689999999999888873 3 89999999999996 8899987789999999999999 9999966 578999999999


Q ss_pred             EeeCCCCCCCcccCCCCCCC---EeeecCC-cCCccccc-ccCCCCCC-EEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371          175 CLDYCRLKDIAIVGQLKKLE---ILILARS-TIKQLPLE-IGQLTRLQ-LLDLSNCWLLEVIAPNVISKLSQLEELYMGN  248 (606)
Q Consensus       175 ~l~~~~~~~~~~i~~l~~L~---~L~l~~~-~l~~lp~~-i~~L~~L~-~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~  248 (606)
                      ++++|.++..+.+..+.+|+   +|++++| .++.+|.. +..+++|+ +|++++|.. ..+|...+.. ++|++|++++
T Consensus       111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l-~~i~~~~~~~-~~L~~L~L~~  188 (239)
T 2xwt_C          111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGYAFNG-TKLDAVYLNK  188 (239)
T ss_dssp             EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC-CEECTTTTTT-CEEEEEECTT
T ss_pred             eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC-cccCHhhcCC-CCCCEEEcCC
Confidence            99999998833388888888   9999999 99988764 88999999 999999765 4777763444 8999999999


Q ss_pred             CC-CCCccccCCCccchHhhccC-CCCCEEEEeeCCCCCCCccccccCCcEEEE
Q 007371          249 SF-SGWEKVEGGSNASLVELERL-TKLATLEIEVADAEILPPNFVSVELQRYRI  300 (606)
Q Consensus       249 ~~-~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  300 (606)
                      |. +...++        ..++.+ ++|+.|++++|.+..+|.. ..++|+.|++
T Consensus       189 n~~l~~i~~--------~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l  233 (239)
T 2xwt_C          189 NKYLTVIDK--------DAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIA  233 (239)
T ss_dssp             CTTCCEECT--------TTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEEC
T ss_pred             CCCcccCCH--------HHhhccccCCcEEECCCCccccCChh-HhccCceeec
Confidence            95 766554        567888 9999999999999888765 3356666654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.70  E-value=2.5e-16  Score=154.26  Aligned_cols=173  Identities=23%  Similarity=0.283  Sum_probs=144.8

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      +.++.|++++|.+..++....+++|++|++++|.+..++.  +..+++|++|++++|.++.+|. +..+++|++|++++|
T Consensus        46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN  122 (291)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred             CcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence            7789999999999888776688999999999998888877  6889999999999999888765 888999999999999


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .++.++.+..+++|++|++++|.++.+ ..++.+++|++|++++|.. ..++.  +..+++|++|++++|.+...     
T Consensus       123 ~i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l-~~~~~--l~~l~~L~~L~L~~N~i~~l-----  193 (291)
T 1h6t_A          123 GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI-SDIVP--LAGLTKLQNLYLSKNHISDL-----  193 (291)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCBC-----
T ss_pred             cCCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCcc-ccchh--hcCCCccCEEECCCCcCCCC-----
Confidence            988877788899999999999988887 5788899999999998764 44544  78899999999999877654     


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPN  289 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  289 (606)
                           ..+..+++|+.|++++|.+...|..
T Consensus       194 -----~~l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          194 -----RALAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             -----GGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred             -----hhhccCCCCCEEECcCCcccCCccc
Confidence                 3478889999999998877655543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=4e-17  Score=163.96  Aligned_cols=231  Identities=15%  Similarity=0.094  Sum_probs=104.5

Q ss_pred             cccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc--CCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEee
Q 007371          122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS--LPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILI  197 (606)
Q Consensus       122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~  197 (606)
                      ++++.|.+.++.+...+..+ ..+++|++|++++|.+..  +|..+..+++|++|++++|.+++  +..++++++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            44555555444444433332 245555555555555442  44444555555555555555443  34445555555555


Q ss_pred             ecCC-cCC--cccccccCCCCCCEEecCCC-ccccc-ccHHHhhCCC-CCCEEEccCCCCCCccccCCCccchHhhccCC
Q 007371          198 LARS-TIK--QLPLEIGQLTRLQLLDLSNC-WLLEV-IAPNVISKLS-QLEELYMGNSFSGWEKVEGGSNASLVELERLT  271 (606)
Q Consensus       198 l~~~-~l~--~lp~~i~~L~~L~~L~l~~~-~~~~~-~p~~~i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~  271 (606)
                      +++| .++  .+|..+.++++|++|++++| ..... ++.. ++.++ +|++|++++|....     .+......++.++
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~-~~~l~~~L~~L~l~~~~~~~-----~~~~l~~~~~~~~  222 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA-VAHVSETITQLNLSGYRKNL-----QKSDLSTLVRRCP  222 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH-HHHSCTTCCEEECCSCGGGS-----CHHHHHHHHHHCT
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH-HHhcccCCCEEEeCCCcccC-----CHHHHHHHHhhCC
Confidence            5555 344  24444455555555555554 22221 2322 44555 55555555552100     0011123444555


Q ss_pred             CCCEEEEeeCC-CC-CCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhcccc
Q 007371          272 KLATLEIEVAD-AE-ILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTE  348 (606)
Q Consensus       272 ~L~~L~l~~~~-~~-~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~  348 (606)
                      +|++|++++|. ++ ..+..+.. ++|+.|++..+..........+..+++|+.|++++| .    + ...+.....+++
T Consensus       223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i----~-~~~~~~l~~~l~  296 (336)
T 2ast_B          223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V----P-DGTLQLLKEALP  296 (336)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S----C-TTCHHHHHHHST
T ss_pred             CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c----C-HHHHHHHHhhCc
Confidence            55555555544 22 12222211 444444442222111111123556777777777775 1    1 112232324566


Q ss_pred             ceecccccCcccccccc
Q 007371          349 GLWLETLEGVQSVVHEL  365 (606)
Q Consensus       349 ~L~l~~~~~~~~~~~~l  365 (606)
                      .|++.++......|..+
T Consensus       297 ~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          297 HLQINCSHFTTIARPTI  313 (336)
T ss_dssp             TSEESCCCSCCTTCSSC
T ss_pred             ceEEecccCccccCCcc
Confidence            77776665555455433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.69  E-value=5.7e-17  Score=160.74  Aligned_cols=160  Identities=16%  Similarity=0.057  Sum_probs=82.5

Q ss_pred             ccccceeeccccccccc-chhHh-cCCCCCcEEEeeCCcCcc-CC----ccccCCCCCcEEEeeCCCCCC--CcccCCCC
Q 007371          121 CPCLELLHTEGDGSMQV-SDHFF-KGTEGLKVLNFTRIHFSS-LP----SSLGCLINLQTLCLDYCRLKD--IAIVGQLK  191 (606)
Q Consensus       121 l~~L~~L~~~~~~~~~~-~~~~~-~~l~~L~~L~l~~~~l~~-lp----~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~  191 (606)
                      +++|++|++++|.+... |..++ ..+++|++|++++|.+.. .+    ..+..+++|++|++++|.+..  +..++.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            34455555555554332 22222 455666666666665554 22    223345666666666666555  34555666


Q ss_pred             CCCEeeecCCcCCc---ccc--cccCCCCCCEEecCCCcccccccH---HHhhCCCCCCEEEccCCCCCCccccCCCccc
Q 007371          192 KLEILILARSTIKQ---LPL--EIGQLTRLQLLDLSNCWLLEVIAP---NVISKLSQLEELYMGNSFSGWEKVEGGSNAS  263 (606)
Q Consensus       192 ~L~~L~l~~~~l~~---lp~--~i~~L~~L~~L~l~~~~~~~~~p~---~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~  263 (606)
                      +|++|++++|++..   ++.  .++.+++|++|++++|.. ..++.   ..++.+++|++|++++|.+....+       
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p-------  241 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM-ETPTGVCAALAAAGVQPHSLDLSHNSLRATVN-------  241 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC-CCHHHHHHHHHHHTCCCSSEECTTSCCCCCCC-------
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC-CchHHHHHHHHhcCCCCCEEECCCCCCCccch-------
Confidence            66666666665442   222  224566666666666543 22222   123555666666666666554422       


Q ss_pred             hHhhccC---CCCCEEEEeeCCCCCCCcc
Q 007371          264 LVELERL---TKLATLEIEVADAEILPPN  289 (606)
Q Consensus       264 ~~~l~~l---~~L~~L~l~~~~~~~~~~~  289 (606)
                       ..+..+   ++|++|++++|.+..+|..
T Consensus       242 -~~~~~~~~~~~L~~L~Ls~N~l~~lp~~  269 (310)
T 4glp_A          242 -PSAPRCMWSSALNSLNLSFAGLEQVPKG  269 (310)
T ss_dssp             -SCCSSCCCCTTCCCEECCSSCCCSCCSC
T ss_pred             -hhHHhccCcCcCCEEECCCCCCCchhhh
Confidence             222333   4666666666666555544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.67  E-value=1.1e-16  Score=160.73  Aligned_cols=124  Identities=20%  Similarity=0.159  Sum_probs=61.3

Q ss_pred             CcEEEeeCCcCccCCccccCC--CCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCc--ccccccCCCCCCEEecC
Q 007371          148 LKVLNFTRIHFSSLPSSLGCL--INLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQ--LPLEIGQLTRLQLLDLS  222 (606)
Q Consensus       148 L~~L~l~~~~l~~lp~~~~~l--~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~--lp~~i~~L~~L~~L~l~  222 (606)
                      ++.++++++.+.  |..+..+  .++++|+++++.+.+ +..+.++++|++|++++|.+..  +|..+..+++|++|+++
T Consensus        49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~  126 (336)
T 2ast_B           49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE  126 (336)
T ss_dssp             SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred             heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence            444555544443  2333333  455555555555444 3334455555555555555441  45555555666666666


Q ss_pred             CCcccccccHHHhhCCCCCCEEEccCC-CCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371          223 NCWLLEVIAPNVISKLSQLEELYMGNS-FSGWEKVEGGSNASLVELERLTKLATLEIEVA  281 (606)
Q Consensus       223 ~~~~~~~~p~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  281 (606)
                      +|......+.. ++++++|++|++++| .+...       .....++.+++|++|++++|
T Consensus       127 ~~~l~~~~~~~-l~~~~~L~~L~L~~~~~l~~~-------~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          127 GLRLSDPIVNT-LAKNSNLVRLNLSGCSGFSEF-------ALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             TCBCCHHHHHH-HTTCTTCSEEECTTCBSCCHH-------HHHHHHHHCTTCCEEECCCC
T ss_pred             CcccCHHHHHH-HhcCCCCCEEECCCCCCCCHH-------HHHHHHhcCCCCCEEcCCCC
Confidence            55443344444 555666666666555 22211       01133455555555555554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.67  E-value=2.2e-15  Score=144.38  Aligned_cols=177  Identities=21%  Similarity=0.284  Sum_probs=144.2

Q ss_pred             cccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeee
Q 007371          122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILIL  198 (606)
Q Consensus       122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l  198 (606)
                      ...++++.+++....+|..+   .++++.|++++|.+..+ +..+.++++|++|++++|.++.  +..+.++++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGI---PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCC---CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccccCCCC---CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            45778888888888998865   46899999999999884 4578999999999999999888  466899999999999


Q ss_pred             cCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEE
Q 007371          199 ARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE  277 (606)
Q Consensus       199 ~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  277 (606)
                      ++|.++.+|. .+..+++|++|++++|.. ..+|...++.+++|++|++++|.+...++        ..++.+++|++|+
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~~~~l~~L~~L~  161 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPA--------GAFDKLTNLQTLS  161 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCT--------TTTTTCTTCCEEE
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEECcCCcCCccCH--------HHcCcCcCCCEEE
Confidence            9999998875 468899999999999754 46666557889999999999998887764        5688899999999


Q ss_pred             EeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccc
Q 007371          278 IEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSI  333 (606)
Q Consensus       278 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~  333 (606)
                      +++|.+..++..                       .+..+++|+.|++++|.+.+.
T Consensus       162 L~~N~l~~~~~~-----------------------~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          162 LSTNQLQSVPHG-----------------------AFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSSCCSCCCTT-----------------------TTTTCTTCCEEECCSCCBCTT
T ss_pred             CCCCcCCccCHH-----------------------HHhCCCCCCEEEeeCCceeCC
Confidence            999988766543                       235566778888888777554

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.66  E-value=1.1e-15  Score=149.75  Aligned_cols=177  Identities=21%  Similarity=0.204  Sum_probs=141.5

Q ss_pred             ecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcc
Q 007371          107 LTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAI  186 (606)
Q Consensus       107 l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~  186 (606)
                      +..+.+..+.....+++|+.|+++++.+..++.  +..+++|++|++++|.++.++. +.++++|++|++++|.++.++.
T Consensus        31 l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~  107 (291)
T 1h6t_A           31 LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS  107 (291)
T ss_dssp             TTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG
T ss_pred             hcCCCcccccchhhcCcccEEEccCCCcccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh
Confidence            344444444444578899999999998888865  5789999999999999999776 8999999999999999988667


Q ss_pred             cCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHh
Q 007371          187 VGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVE  266 (606)
Q Consensus       187 i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~  266 (606)
                      +..+++|++|++++|.++.++ .+..+++|++|++++|... .++ . ++.+++|++|++++|.+....         . 
T Consensus       108 l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~-~~~-~-l~~l~~L~~L~L~~N~l~~~~---------~-  173 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DIT-V-LSRLTKLDTLSLEDNQISDIV---------P-  173 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCCCG---------G-
T ss_pred             hccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCC-cch-h-hccCCCCCEEEccCCccccch---------h-
Confidence            999999999999999998874 6889999999999997654 444 3 899999999999999877653         2 


Q ss_pred             hccCCCCCEEEEeeCCCCCCCccccccCCcEEEE
Q 007371          267 LERLTKLATLEIEVADAEILPPNFVSVELQRYRI  300 (606)
Q Consensus       267 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  300 (606)
                      +..+++|+.|++++|.+..++.....++|+.|++
T Consensus       174 l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l  207 (291)
T 1h6t_A          174 LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  207 (291)
T ss_dssp             GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEE
T ss_pred             hcCCCccCEEECCCCcCCCChhhccCCCCCEEEC
Confidence            7889999999999998876654222244444444

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=1.3e-15  Score=153.58  Aligned_cols=234  Identities=11%  Similarity=0.065  Sum_probs=119.7

Q ss_pred             eeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--C-cccCCCCCCCE-eeecC
Q 007371          126 LLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--I-AIVGQLKKLEI-LILAR  200 (606)
Q Consensus       126 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~-~~i~~l~~L~~-L~l~~  200 (606)
                      ++..+++.+..+|..+   .+++++|++++|.|+.+|. .|.++++|++|++++|.+.+  + ..+.++++|+. +.+.+
T Consensus        13 ~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           13 VFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             EEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             EEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            3444444445555443   2445555555555555443 34555555555555555433  1 34455555443 33333


Q ss_pred             CcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCC-CCCCccccCCCccchHhhccC-CCCCEEE
Q 007371          201 STIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS-FSGWEKVEGGSNASLVELERL-TKLATLE  277 (606)
Q Consensus       201 ~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~l-~~L~~L~  277 (606)
                      |+++.+| ..+..+++|++|++++|.. ..+|........++..|++.++ .+...+.        ..+..+ ..++.|+
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~--------~~f~~~~~~l~~L~  160 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGI-KHLPDVHKIHSLQKVLLDIQDNINIHTIER--------NSFVGLSFESVILW  160 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECC-SSCCCCTTCCBSSCEEEEEESCTTCCEECT--------TSSTTSBSSCEEEE
T ss_pred             CcccccCchhhhhcccccccccccccc-ccCCchhhcccchhhhhhhccccccccccc--------cchhhcchhhhhhc
Confidence            4555443 3345555555555555432 2233221333344445554432 2222211        122222 2455566


Q ss_pred             EeeCCCCCCCccccc-cCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceeccccc
Q 007371          278 IEVADAEILPPNFVS-VELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLE  356 (606)
Q Consensus       278 l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~  356 (606)
                      +++|+++.++..... .+|+.+.+..++....--...+..+++|+.|++++|.+. .++.  +   .+.+|+.|.+.++.
T Consensus       161 L~~N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~---~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          161 LNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--Y---GLENLKKLRARSTY  234 (350)
T ss_dssp             CCSSCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--S---SCTTCCEEECTTCT
T ss_pred             cccccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--h---hhccchHhhhccCC
Confidence            666666555544322 445555442222222222234567778888888887663 3322  1   25788888888888


Q ss_pred             CcccccccccCCCCCCCCcEEEeec
Q 007371          357 GVQSVVHELDDGEGFPRLKHLHVKS  381 (606)
Q Consensus       357 ~~~~~~~~l~~~~~l~~L~~L~l~~  381 (606)
                      ..+.+|.    +..+++|+.+++.+
T Consensus       235 ~l~~lP~----l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          235 NLKKLPT----LEKLVALMEASLTY  255 (350)
T ss_dssp             TCCCCCC----TTTCCSCCEEECSC
T ss_pred             CcCcCCC----chhCcChhhCcCCC
Confidence            8888875    44889999998864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.65  E-value=8.8e-16  Score=164.94  Aligned_cols=173  Identities=23%  Similarity=0.293  Sum_probs=146.9

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      ..++.|++++|.+..++....+++|+.|++++|.+..++.  +..+++|++|+|++|.+..+| .+..+++|++|++++|
T Consensus        43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N  119 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHN  119 (605)
T ss_dssp             TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTS
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCC
Confidence            8899999999999888876689999999999998888877  688999999999999998876 6889999999999999


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .+..++.+..+++|+.|++++|.++.+ ..+..+++|++|++++|...+ +++  +..+++|++|++++|.+...     
T Consensus       120 ~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l~~L~~L~Ls~N~i~~l-----  190 (605)
T 1m9s_A          120 GISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISD-IVP--LAGLTKLQNLYLSKNHISDL-----  190 (605)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCCBC-----
T ss_pred             CCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCC-chh--hccCCCCCEEECcCCCCCCC-----
Confidence            988877788999999999999998887 578899999999999976544 443  78999999999999987654     


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPN  289 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  289 (606)
                           ..+..+++|+.|++++|.+...|..
T Consensus       191 -----~~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          191 -----RALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             -----GGGTTCTTCSEEECCSEEEECCCCC
T ss_pred             -----hHHccCCCCCEEEccCCcCcCCccc
Confidence                 4578889999999998877655443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.64  E-value=1.5e-15  Score=139.57  Aligned_cols=148  Identities=19%  Similarity=0.194  Sum_probs=84.5

Q ss_pred             ccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeee
Q 007371          121 CPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILIL  198 (606)
Q Consensus       121 l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l  198 (606)
                      +++|+.|+++++.+..++ . +..+++|++|++++|.++.++ .+..+++|++|++++|.++.  +..++.+++|++|++
T Consensus        43 l~~L~~L~l~~n~i~~l~-~-l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L  119 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-G-IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI  119 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-T-GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred             cCCccEEeccCCCccChH-H-HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence            344455555444444444 2 355566666666666554443 45556666666666666554  555666666666666


Q ss_pred             cCCcCCc-ccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEE
Q 007371          199 ARSTIKQ-LPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE  277 (606)
Q Consensus       199 ~~~~l~~-lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  277 (606)
                      ++|.++. .|..++.+++|++|++++|...+.+|.  ++.+++|++|++++|.+...          ..+..+++|++|+
T Consensus       120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~l~~L~~L~l~~n~i~~~----------~~l~~l~~L~~L~  187 (197)
T 4ezg_A          120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKTLPELKSLNIQFDGVHDY----------RGIEDFPKLNQLY  187 (197)
T ss_dssp             CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGGCSSCCEEECTTBCCCCC----------TTGGGCSSCCEEE
T ss_pred             cCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcCCCCCCEEECCCCCCcCh----------HHhccCCCCCEEE
Confidence            6666653 455566666666666666554555552  56666666666666655432          2355666666666


Q ss_pred             EeeCCC
Q 007371          278 IEVADA  283 (606)
Q Consensus       278 l~~~~~  283 (606)
                      +++|.+
T Consensus       188 l~~N~i  193 (197)
T 4ezg_A          188 AFSQTI  193 (197)
T ss_dssp             ECBC--
T ss_pred             eeCccc
Confidence            666654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.64  E-value=3.6e-15  Score=150.35  Aligned_cols=195  Identities=15%  Similarity=0.142  Sum_probs=109.3

Q ss_pred             cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCCcCC-cccc-cccCCCCCCEEecCCC
Q 007371          149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARSTIK-QLPL-EIGQLTRLQLLDLSNC  224 (606)
Q Consensus       149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~-~lp~-~i~~L~~L~~L~l~~~  224 (606)
                      ++++.++++++.+|..+  ..++++|++++|+++. | ..+.++++|++|++++|.+. .+|. .+.++++++++...++
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~   89 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   89 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence            56777778888888765  3567788888877777 4 45777777777777777764 3543 3566777666544443


Q ss_pred             cccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEee-CCCCCCCccccccCCcEEEEEeC
Q 007371          225 WLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEV-ADAEILPPNFVSVELQRYRIRIG  303 (606)
Q Consensus       225 ~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~L~~L~l~~~  303 (606)
                      +.+..+++..++.+++|++|++++|.+...+.        .......++..|++.. +.+..++..              
T Consensus        90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~~~--------------  147 (350)
T 4ay9_X           90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIERN--------------  147 (350)
T ss_dssp             TTCCEECTTSBCCCTTCCEEEEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEECTT--------------
T ss_pred             CcccccCchhhhhccccccccccccccccCCc--------hhhcccchhhhhhhcccccccccccc--------------
Confidence            44555544446666677777766666554443        2222333444555543 233333322              


Q ss_pred             CCCCCCCCCcccC-CCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecC
Q 007371          304 DESEDEFDPLLVK-SEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSC  382 (606)
Q Consensus       304 ~~~~~~~~~~l~~-~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c  382 (606)
                               .+.. ...++.|++++|.+. .++.  .... ..+|++|.+.++..++.+|...  ++++++|++|+++++
T Consensus       148 ---------~f~~~~~~l~~L~L~~N~i~-~i~~--~~f~-~~~L~~l~l~~~n~l~~i~~~~--f~~l~~L~~LdLs~N  212 (350)
T 4ay9_X          148 ---------SFVGLSFESVILWLNKNGIQ-EIHN--SAFN-GTQLDELNLSDNNNLEELPNDV--FHGASGPVILDISRT  212 (350)
T ss_dssp             ---------SSTTSBSSCEEEECCSSCCC-EECT--TSST-TEEEEEEECTTCTTCCCCCTTT--TTTEECCSEEECTTS
T ss_pred             ---------chhhcchhhhhhcccccccc-CCCh--hhcc-ccchhHHhhccCCcccCCCHHH--hccCcccchhhcCCC
Confidence                     1111 224556666665542 2211  1111 2456666666666666665432  226666666666666

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=151.24  Aligned_cols=178  Identities=17%  Similarity=0.086  Sum_probs=143.7

Q ss_pred             cCCCeEEEecCCCCc-ccCCc---ccccccceeeccccccccc----chhHhcCCCCCcEEEeeCCcCcc-CCccccCCC
Q 007371           99 RKDPIAISLTYGGIQ-VLPER---LQCPCLELLHTEGDGSMQV----SDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLI  169 (606)
Q Consensus        99 ~~~l~~L~l~~~~~~-~l~~~---~~l~~L~~L~~~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~  169 (606)
                      ...+++|++++|.+. ..+..   ..+++|++|++++|.+...    +...+..+++|++|++++|.+.. .|..++.++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            377999999999984 44444   5689999999999987652    22233579999999999999988 457889999


Q ss_pred             CCcEEEeeCCCCCC------CcccCCCCCCCEeeecCCcCCccccc----ccCCCCCCEEecCCCcccccccHHHhhCC-
Q 007371          170 NLQTLCLDYCRLKD------IAIVGQLKKLEILILARSTIKQLPLE----IGQLTRLQLLDLSNCWLLEVIAPNVISKL-  238 (606)
Q Consensus       170 ~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~lp~~----i~~L~~L~~L~l~~~~~~~~~p~~~i~~l-  238 (606)
                      +|++|++++|.+..      ...++.+++|++|++++|+++.+|..    ++.+++|++|++++|...+..|.. ++.+ 
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~-~~~~~  248 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPS-APRCM  248 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSC-CSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhh-HHhcc
Confidence            99999999999754      23347899999999999999877653    578899999999998877666766 6666 


Q ss_pred             --CCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCc
Q 007371          239 --SQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPP  288 (606)
Q Consensus       239 --~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~  288 (606)
                        ++|++|++++|.+...+.         .+.  ++|++|++++|.+..+|.
T Consensus       249 ~~~~L~~L~Ls~N~l~~lp~---------~~~--~~L~~L~Ls~N~l~~~~~  289 (310)
T 4glp_A          249 WSSALNSLNLSFAGLEQVPK---------GLP--AKLRVLDLSSNRLNRAPQ  289 (310)
T ss_dssp             CCTTCCCEECCSSCCCSCCS---------CCC--SCCSCEECCSCCCCSCCC
T ss_pred             CcCcCCEEECCCCCCCchhh---------hhc--CCCCEEECCCCcCCCCch
Confidence              699999999999886543         232  799999999999876654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.63  E-value=8.3e-17  Score=164.90  Aligned_cols=70  Identities=17%  Similarity=-0.009  Sum_probs=46.2

Q ss_pred             CcccCCCCCcEEEecCccccccc--ccchhHHH-hhccccceecccccCcc----cccccccCCCCCCCCcEEEeecCC
Q 007371          312 PLLVKSEAPRLMMLKGLEKVSIL--QENDGTKM-LLQRTEGLWLETLEGVQ----SVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       312 ~~l~~~~~L~~L~L~~~~~~~~~--~~~~~~~~-~l~~L~~L~l~~~~~~~----~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      ..+..+++|+.|+|++|.+...-  ..+.++.. .+++|+.|++++|....    .+|..+.  .++++|++|++++|+
T Consensus       238 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~--~~l~~L~~L~l~~N~  314 (386)
T 2ca6_A          238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID--EKMPDLLFLELNGNR  314 (386)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHH--HHCTTCCEEECTTSB
T ss_pred             HHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHH--hcCCCceEEEccCCc
Confidence            34567788888888888764331  11222211 15889999999886555    3666551  257999999999886

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.62  E-value=6.8e-15  Score=135.26  Aligned_cols=147  Identities=17%  Similarity=0.166  Sum_probs=129.9

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDY  178 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~  178 (606)
                      +.+++|++++|.+..++....+++|++|++++|....++.  +..+++|++|++++|.++. .|..++.+++|++|++++
T Consensus        44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~  121 (197)
T 4ezg_A           44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISH  121 (197)
T ss_dssp             HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCS
T ss_pred             CCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecC
Confidence            7899999999999998865599999999999997776653  6889999999999999987 788899999999999999


Q ss_pred             CCCCC--CcccCCCCCCCEeeecCCc-CCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCC
Q 007371          179 CRLKD--IAIVGQLKKLEILILARST-IKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG  252 (606)
Q Consensus       179 ~~~~~--~~~i~~l~~L~~L~l~~~~-l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~  252 (606)
                      |.++.  +..++.+++|++|++++|. ++.+| .+..+++|++|++++|.. ..++ . +..+++|++|++++|.+.
T Consensus       122 n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i-~~~~-~-l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          122 SAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGV-HDYR-G-IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             SBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCC-CCCT-T-GGGCSSCCEEEECBC---
T ss_pred             CccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCC-cChH-H-hccCCCCCEEEeeCcccC
Confidence            99987  7889999999999999997 88887 799999999999999764 4565 3 899999999999999764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.62  E-value=3e-15  Score=160.73  Aligned_cols=179  Identities=21%  Similarity=0.195  Sum_probs=145.3

Q ss_pred             EEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCC
Q 007371          105 ISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDI  184 (606)
Q Consensus       105 L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~  184 (606)
                      +.+..+.+..+.....+++|+.|.++++.+..++.  +..+++|+.|+|++|.+..+|. +..+++|++|++++|.+..+
T Consensus        26 l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l  102 (605)
T 1m9s_A           26 DNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL  102 (605)
T ss_dssp             HHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred             HhccCCCcccccchhcCCCCCEEECcCCCCCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence            33444555555555578899999999999888875  5889999999999999999776 89999999999999999887


Q ss_pred             cccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccch
Q 007371          185 AIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASL  264 (606)
Q Consensus       185 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~  264 (606)
                      +.+..+++|++|++++|.+..+| .+..+++|+.|++++|... .++ . ++.+++|+.|++++|.+....         
T Consensus       103 ~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~-~l~-~-l~~l~~L~~L~Ls~N~l~~~~---------  169 (605)
T 1m9s_A          103 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKIT-DIT-V-LSRLTKLDTLSLEDNQISDIV---------  169 (605)
T ss_dssp             TTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCC-CCG-G-GGSCTTCSEEECCSSCCCCCG---------
T ss_pred             hhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccC-Cch-h-hcccCCCCEEECcCCcCCCch---------
Confidence            78999999999999999999875 5889999999999997654 444 3 899999999999999887654         


Q ss_pred             HhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEE
Q 007371          265 VELERLTKLATLEIEVADAEILPPNFVSVELQRYRI  300 (606)
Q Consensus       265 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  300 (606)
                      . +..+++|+.|++++|.+..++.....++|+.|++
T Consensus       170 ~-l~~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L  204 (605)
T 1m9s_A          170 P-LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL  204 (605)
T ss_dssp             G-GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEC
T ss_pred             h-hccCCCCCEEECcCCCCCCChHHccCCCCCEEEc
Confidence            2 8889999999999998876654322355555555

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.62  E-value=7.5e-17  Score=165.22  Aligned_cols=238  Identities=13%  Similarity=0.036  Sum_probs=133.4

Q ss_pred             CCCeEEEecCCCCcc-----cCCcc-cccccceeecccccccc----cchhH------hcCCCCCcEEEeeCCcCcc---
Q 007371          100 KDPIAISLTYGGIQV-----LPERL-QCPCLELLHTEGDGSMQ----VSDHF------FKGTEGLKVLNFTRIHFSS---  160 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~-----l~~~~-~l~~L~~L~~~~~~~~~----~~~~~------~~~l~~L~~L~l~~~~l~~---  160 (606)
                      +.+++|++++|.+..     +.... .+++|++|+++++....    +|..+      +..+++|++|++++|.+..   
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            567777777776633     22222 56677777766654332    23332      2566777777777777665   


Q ss_pred             --CCccccCCCCCcEEEeeCCCCCC--Ccc----cCCC---------CCCCEeeecCCcCC--ccc---ccccCCCCCCE
Q 007371          161 --LPSSLGCLINLQTLCLDYCRLKD--IAI----VGQL---------KKLEILILARSTIK--QLP---LEIGQLTRLQL  218 (606)
Q Consensus       161 --lp~~~~~l~~L~~L~l~~~~~~~--~~~----i~~l---------~~L~~L~l~~~~l~--~lp---~~i~~L~~L~~  218 (606)
                        +|..+.++++|++|++++|.+..  +..    +..+         ++|++|++++|.+.  .+|   ..+..+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence              55666777777777777777654  222    3333         67777777777665  334   35566777777


Q ss_pred             EecCCCccccc----ccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccC
Q 007371          219 LDLSNCWLLEV----IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVE  294 (606)
Q Consensus       219 L~l~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~  294 (606)
                      |++++|.....    +.+..+..+++|++|++++|.+....    ....+..+..+++|++|++++|.+......     
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g----~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~-----  262 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG----SSALAIALKSWPNLRELGLNDCLLSARGAA-----  262 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHH----HHHHHHHGGGCTTCCEEECTTCCCCHHHHH-----
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHH----HHHHHHHHccCCCcCEEECCCCCCchhhHH-----
Confidence            77777653311    22211566777777777777653110    011225566777777777777665432100     


Q ss_pred             CcEEEEEeCCCCCCCCCCcc--cCCCCCcEEEecCcccccc--cccchhHHHhhccccceecccccCccc
Q 007371          295 LQRYRIRIGDESEDEFDPLL--VKSEAPRLMMLKGLEKVSI--LQENDGTKMLLQRTEGLWLETLEGVQS  360 (606)
Q Consensus       295 L~~L~l~~~~~~~~~~~~~l--~~~~~L~~L~L~~~~~~~~--~~~~~~~~~~l~~L~~L~l~~~~~~~~  360 (606)
                                    .++..+  ..+++|+.|+|++|.+...  ...+..+...+++|++|++++|.....
T Consensus       263 --------------~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          263 --------------AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             --------------HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             --------------HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence                          001112  2256677777777665431  112333433457777777777664443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.60  E-value=1.2e-14  Score=154.32  Aligned_cols=187  Identities=17%  Similarity=0.185  Sum_probs=137.5

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      .+++.|++++|.+..+|... .++|++|++++|.+..+|    ..+++|++|++++|.++.+|. +.+  +|++|++++|
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNALISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCCCcccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            57899999999998788755 378899998888888888    347889999999998888887 655  8899999998


Q ss_pred             CCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371          180 RLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG  258 (606)
Q Consensus       180 ~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~  258 (606)
                      .++. |.   .+++|++|++++|.++.+|.   .+++|++|++++|... .+|.  ++  ++|++|++++|.+...+. .
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~-~lp~--l~--~~L~~L~Ls~N~L~~lp~-~  198 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLT-FLPE--LP--ESLEALDVSTNLLESLPA-V  198 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCS-CCCC--CC--TTCCEEECCSSCCSSCCC-C
T ss_pred             cCCCCCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCC-Ccch--hh--CCCCEEECcCCCCCchhh-H
Confidence            8888 44   67889999999988888886   5788888888887644 4776  44  788888888887775442 1


Q ss_pred             CCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371          259 GSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL  334 (606)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~  334 (606)
                      ..    .-....+.|+.|++++|.+..+|..                        +..+++|+.|+|++|.+.+..
T Consensus       199 ~~----~L~~~~~~L~~L~Ls~N~l~~lp~~------------------------l~~l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          199 PV----RNHHSEETEIFFRCRENRITHIPEN------------------------ILSLDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             C------------CCEEEECCSSCCCCCCGG------------------------GGGSCTTEEEECCSSSCCHHH
T ss_pred             HH----hhhcccccceEEecCCCcceecCHH------------------------HhcCCCCCEEEeeCCcCCCcC
Confidence            00    0011122338888888877766654                        344677788888887775543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.60  E-value=2.7e-15  Score=144.47  Aligned_cols=170  Identities=19%  Similarity=0.224  Sum_probs=132.4

Q ss_pred             CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCC
Q 007371          102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~  181 (606)
                      +..++++.+.+..++....+++|++|+++++.+..++.  +..+++|++|++++|.++.+|. +.++++|++|++++|.+
T Consensus        21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l   97 (263)
T 1xeu_A           21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRL   97 (263)
T ss_dssp             HHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCC
T ss_pred             HHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCcc
Confidence            44455667777776655578888888888888887773  5788899999999998888776 88889999999999988


Q ss_pred             CCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCc
Q 007371          182 KDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSN  261 (606)
Q Consensus       182 ~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~  261 (606)
                      +..+.+.. .+|++|++++|.++.+| .+..+++|++|++++|.. ..++.  ++.+++|++|++++|.+...       
T Consensus        98 ~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i-~~~~~--l~~l~~L~~L~L~~N~i~~~-------  165 (263)
T 1xeu_A           98 KNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKL-KSIVM--LGFLSKLEVLDLHGNEITNT-------  165 (263)
T ss_dssp             SCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCC-CBCGG--GGGCTTCCEEECTTSCCCBC-------
T ss_pred             CCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcC-CCChH--HccCCCCCEEECCCCcCcch-------
Confidence            88333344 88999999999888875 588899999999988764 44553  78899999999998877654       


Q ss_pred             cchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371          262 ASLVELERLTKLATLEIEVADAEILPPN  289 (606)
Q Consensus       262 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~  289 (606)
                         ..++.+++|+.|++++|.+...|..
T Consensus       166 ---~~l~~l~~L~~L~l~~N~~~~~~~~  190 (263)
T 1xeu_A          166 ---GGLTRLKKVNWIDLTGQKCVNEPVK  190 (263)
T ss_dssp             ---TTSTTCCCCCEEEEEEEEEECCCEE
T ss_pred             ---HHhccCCCCCEEeCCCCcccCCccc
Confidence               4577888999999998877655543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.60  E-value=3.2e-15  Score=138.83  Aligned_cols=170  Identities=18%  Similarity=0.238  Sum_probs=116.5

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~  181 (606)
                      +.++.+++.+..+|... .+++++|+++++.+..++...|..+++|++|++++|.++.+|. .+..+++|++|++++|.+
T Consensus        10 ~~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            34566666666666443 3477788887777777777767778888888888887777554 357778888888888877


Q ss_pred             CC-C-cccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccC
Q 007371          182 KD-I-AIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEG  258 (606)
Q Consensus       182 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~  258 (606)
                      +. + ..+.++++|++|++++|.++.+|.. +.++++|++|++++|... .++...+..+++|++|++++|.+.      
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~------  161 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD------  161 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC------
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccc-eeCHHHhccCCCccEEEecCCCee------
Confidence            77 3 4467788888888888877777654 577788888888776543 455444677788888888777443      


Q ss_pred             CCccchHhhccCCCCCEEEEeeCCCC-CCCcc
Q 007371          259 GSNASLVELERLTKLATLEIEVADAE-ILPPN  289 (606)
Q Consensus       259 ~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~  289 (606)
                               +.+++|+.|++..|.+. .+|.+
T Consensus       162 ---------~~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          162 ---------CTCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             ---------CCTTTTHHHHHHHHHCTTTBBCT
T ss_pred             ---------cCCCCHHHHHHHHHhCCceeecc
Confidence                     23446666666665553 45544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=1.4e-14  Score=136.47  Aligned_cols=146  Identities=19%  Similarity=0.237  Sum_probs=78.3

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARS  201 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~  201 (606)
                      +.++.+++....+|..+   .++|++|++++|.++.+ |..+.++++|++|++++|.+.. + ..+..+++|++|++++|
T Consensus        22 ~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N   98 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN   98 (229)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence            44445555555555433   35555555555555553 4445555555566555555554 2 33455555666666555


Q ss_pred             cCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEee
Q 007371          202 TIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEV  280 (606)
Q Consensus       202 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  280 (606)
                      .++.+|.. +..+++|++|++++|.. ..+|.. +..+++|++|++++|.+...+.        ..+..+++|+.|++.+
T Consensus        99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l-~~lp~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A           99 QLTVLPSAVFDRLVHLKELFMCCNKL-TELPRG-IERLTHLTHLALDQNQLKSIPH--------GAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCC-CSCCTT-GGGCTTCSEEECCSSCCCCCCT--------TTTTTCTTCCEEECTT
T ss_pred             cCCccChhHhCcchhhCeEeccCCcc-cccCcc-cccCCCCCEEECCCCcCCccCH--------HHHhCCCCCCEEEeeC
Confidence            55555443 34555566666655442 355544 5555566666666555554433        3455555666666655


Q ss_pred             CCC
Q 007371          281 ADA  283 (606)
Q Consensus       281 ~~~  283 (606)
                      |.+
T Consensus       169 N~~  171 (229)
T 3e6j_A          169 NPW  171 (229)
T ss_dssp             SCB
T ss_pred             CCc
Confidence            554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.59  E-value=2.3e-16  Score=159.98  Aligned_cols=248  Identities=12%  Similarity=0.033  Sum_probs=147.9

Q ss_pred             EEecCCCCc-ccCCccc-ccccceeecccccccccch----hHhcCCC-CCcEEEeeCCcCcc-CCccccCC-----CCC
Q 007371          105 ISLTYGGIQ-VLPERLQ-CPCLELLHTEGDGSMQVSD----HFFKGTE-GLKVLNFTRIHFSS-LPSSLGCL-----INL  171 (606)
Q Consensus       105 L~l~~~~~~-~l~~~~~-l~~L~~L~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~l~~-lp~~~~~l-----~~L  171 (606)
                      +.++.|.+. .+|.... .++|++|++++|.+...+.    ..+..++ +|++|++++|.+.. .+..+..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            456667663 4444443 3448888888887777765    5567777 78888888888776 34445543     788


Q ss_pred             cEEEeeCCCCCC--Ccc----cCCC-CCCCEeeecCCcCCcccc-----cccC-CCCCCEEecCCCcccc----cccHHH
Q 007371          172 QTLCLDYCRLKD--IAI----VGQL-KKLEILILARSTIKQLPL-----EIGQ-LTRLQLLDLSNCWLLE----VIAPNV  234 (606)
Q Consensus       172 ~~L~l~~~~~~~--~~~----i~~l-~~L~~L~l~~~~l~~lp~-----~i~~-L~~L~~L~l~~~~~~~----~~p~~~  234 (606)
                      ++|++++|.++.  +..    +..+ ++|++|++++|.++..+.     .+.. .++|++|++++|....    .++.. 
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~-  161 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI-  161 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH-
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH-
Confidence            888888888765  232    4444 788888888887775443     2334 3588888888876543    23333 


Q ss_pred             hhCCC-CCCEEEccCCCCCCccccCCCccchHhhccC-CCCCEEEEeeCCCCC-----CCccccccCCcEEEEEeCCCCC
Q 007371          235 ISKLS-QLEELYMGNSFSGWEKVEGGSNASLVELERL-TKLATLEIEVADAEI-----LPPNFVSVELQRYRIRIGDESE  307 (606)
Q Consensus       235 i~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~  307 (606)
                      +..++ +|++|++++|.+.....    ......+... ++|++|++++|.+..     ++..+..               
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~---------------  222 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNC----AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS---------------  222 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH---------------
T ss_pred             HhcCCccccEeeecCCCCchhhH----HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc---------------
Confidence            45555 78888888887654432    1222344555 488888888877654     2222111               


Q ss_pred             CCCCCcccCCCCCcEEEecCccccccccc-chhHHHhhccccceeccccc-------CcccccccccCCCCCCCCcEEEe
Q 007371          308 DEFDPLLVKSEAPRLMMLKGLEKVSILQE-NDGTKMLLQRTEGLWLETLE-------GVQSVVHELDDGEGFPRLKHLHV  379 (606)
Q Consensus       308 ~~~~~~l~~~~~L~~L~L~~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~-------~~~~~~~~l~~~~~l~~L~~L~l  379 (606)
                              ..++|+.|+|++|.+...... -......+++|+.|++++|.       ....++..+.   .+++|++|++
T Consensus       223 --------~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~---~l~~L~~LdL  291 (362)
T 3goz_A          223 --------IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP---NIQKIILVDK  291 (362)
T ss_dssp             --------SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST---TCCEEEEECT
T ss_pred             --------CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhc---cCCceEEEec
Confidence                    123455555555544221110 00111224667777777765       1222333333   7888889999


Q ss_pred             ecCC
Q 007371          380 KSCS  383 (606)
Q Consensus       380 ~~c~  383 (606)
                      ++++
T Consensus       292 ~~N~  295 (362)
T 3goz_A          292 NGKE  295 (362)
T ss_dssp             TSCB
T ss_pred             CCCc
Confidence            8876

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.59  E-value=1.3e-14  Score=135.71  Aligned_cols=148  Identities=16%  Similarity=0.211  Sum_probs=97.9

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARS  201 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~  201 (606)
                      +.++..++.+..+|..+   .+++++|++++|.++.+|. .+..+++|++|++++|.++.  |..+..+++|++|++++|
T Consensus        14 ~~v~c~~~~l~~iP~~l---~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNL---PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCSSC---CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCCcc---CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence            45556666666666544   3567777777777776443 56677777777777777666  466777777777777777


Q ss_pred             cCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEee
Q 007371          202 TIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEV  280 (606)
Q Consensus       202 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  280 (606)
                      .++.+|.. +..+++|++|++++|...+..|.. +..+++|++|++++|.+...++        ..+..+++|+.|++.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDA-FQDLHNLNLLSLYDNKLQTIAK--------GTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEECCS
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHH-cCCCCCCCEEECCCCcCCEECH--------HHHhCCCCCCEEEeCC
Confidence            77777655 356777777777776544333433 6777777777777777666554        4566677777777777


Q ss_pred             CCCC
Q 007371          281 ADAE  284 (606)
Q Consensus       281 ~~~~  284 (606)
                      |.+.
T Consensus       162 N~~~  165 (220)
T 2v9t_B          162 NPFI  165 (220)
T ss_dssp             SCEE
T ss_pred             CCcC
Confidence            6653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.58  E-value=1.3e-14  Score=135.71  Aligned_cols=149  Identities=19%  Similarity=0.240  Sum_probs=117.6

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~  181 (606)
                      +.++.+++.+..+|.... ++++.|++++|.+..++...|..+++|++|++++|.++. .|..|.++++|++|++++|.+
T Consensus        14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            467778888887876543 678888888888888887777888888888888888888 477888888888898888888


Q ss_pred             CC-C-cccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371          182 KD-I-AIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       182 ~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      +. | ..+..+++|++|++++|.++.+ |..+..+++|++|++++|... .++...+..+++|++|++++|.+..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQ-TIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCC-EECHHHHhCCCCCCEEEeCCCCcCC
Confidence            87 4 4567888888888888888876 456788888888888887644 4444447888888888888886543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=135.60  Aligned_cols=148  Identities=14%  Similarity=0.141  Sum_probs=93.3

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC--ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP--SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILAR  200 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp--~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~  200 (606)
                      ++++++++.+..+|..+   ...+++|++++|.++.++  ..+..+++|++|++++|.++.  +..+..+.+|++|++++
T Consensus        14 ~~l~~s~n~l~~iP~~~---~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI---PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccCccCC---CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence            45556666666666543   344566777777666642  235666777777777776666  34666777777777777


Q ss_pred             CcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371          201 STIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       201 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      |.++.+|.. +..+++|++|++++|...+..|.. +..+++|++|++++|.+....+        ..+..+++|+.|+++
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~  161 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-FIGLSSVRLLSLYDNQITTVAP--------GAFDTLHSLSTLNLL  161 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-STTCTTCSEEECTTSCCCCBCT--------TTTTTCTTCCEEECC
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-cCCCccCCEEECCCCcCCEECH--------HHhcCCCCCCEEEec
Confidence            766665543 666777777777776544443444 6667777777777776666544        556667777777777


Q ss_pred             eCCCC
Q 007371          280 VADAE  284 (606)
Q Consensus       280 ~~~~~  284 (606)
                      +|.+.
T Consensus       162 ~N~l~  166 (220)
T 2v70_A          162 ANPFN  166 (220)
T ss_dssp             SCCEE
T ss_pred             CcCCc
Confidence            66653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.58  E-value=7.4e-15  Score=141.43  Aligned_cols=170  Identities=21%  Similarity=0.230  Sum_probs=142.0

Q ss_pred             ChHhHHHHhhhhhcCCCChhhHHHHHhhhccCCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCC
Q 007371           69 PRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGL  148 (606)
Q Consensus        69 ~~~~~~~Lf~~~~~~~~~~~~l~~~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L  148 (606)
                      .......+-.+.....+...++         +.++.|++++|.+..++....+++|++|++++|.+..++.  +..+++|
T Consensus        19 ~~l~~l~l~~~~i~~~~~~~~l---------~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L   87 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLVSQKEL---------SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSP--LKDLTKL   87 (263)
T ss_dssp             HHHHHHHHTCSCTTSEECHHHH---------TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCSSC
T ss_pred             HHHHHHHhcCCCcccccchhhc---------CcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChh--hccCCCC
Confidence            3333444433333334445566         8999999999999999865699999999999999999988  6899999


Q ss_pred             cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccc
Q 007371          149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLE  228 (606)
Q Consensus       149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~  228 (606)
                      ++|++++|.++.+|....  .+|++|++++|.++.++.+.++++|++|++++|+++.+| .++.+++|++|++++|...+
T Consensus        88 ~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           88 EELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             CEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred             CEEECCCCccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence            999999999999876444  999999999999999777999999999999999999987 78999999999999987554


Q ss_pred             cccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          229 VIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       229 ~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      . + . +..+++|+.|++++|.+...+
T Consensus       165 ~-~-~-l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          165 T-G-G-LTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             C-T-T-STTCCCCCEEEEEEEEEECCC
T ss_pred             h-H-H-hccCCCCCEEeCCCCcccCCc
Confidence            4 3 3 899999999999999876554

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=135.17  Aligned_cols=150  Identities=16%  Similarity=0.214  Sum_probs=120.7

Q ss_pred             eEEEecCCCCcccCCcccccccceeeccccccccc-chhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQV-SDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCR  180 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~  180 (606)
                      +.+++++|.+..+|... .+.++.|++++|.+..+ +...|..+++|++|++++|.++.++. .+.++.+|++|++++|.
T Consensus        14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             TEEECCSSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CEeEeCCCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            47888888888888654 34568888888888877 44556889999999999999888554 78899999999999999


Q ss_pred             CCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371          181 LKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE  254 (606)
Q Consensus       181 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~  254 (606)
                      ++.  +..+..+++|++|++++|.++.+ |..+..+++|++|++++|...+..|.. +..+++|++|++++|.+...
T Consensus        93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGA-FDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTT-TTTCTTCCEEECCSCCEECS
T ss_pred             cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHH-hcCCCCCCEEEecCcCCcCC
Confidence            888  35688899999999999988877 567888999999999987765554555 88899999999998876543

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.57  E-value=4.6e-14  Score=130.94  Aligned_cols=145  Identities=23%  Similarity=0.283  Sum_probs=81.0

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARS  201 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~  201 (606)
                      +.+..+++....+|..+   .++|++|++++|.++.+|. .++++++|++|++++|.++. + ..+..+++|++|++++|
T Consensus        10 ~~v~c~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n   86 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN   86 (208)
T ss_dssp             TEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCccCCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence            34455555555566533   4566667777666666443 34666666666666666665 3 34566666666666666


Q ss_pred             cCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEee
Q 007371          202 TIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEV  280 (606)
Q Consensus       202 ~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~  280 (606)
                      .++.+|.. +..+++|++|++++|.. ..++...++.+++|++|++++|.+...+.        ..++.+++|++|++++
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A           87 QLQSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPD--------GVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEECCS
T ss_pred             cCCccCHhHhcCccCCCEEEcCCCcC-cccCHhHhccCCcCCEEECCCCccceeCH--------HHhccCCCccEEEecC
Confidence            66655543 45666666666666543 33333334556666666666655544332        2344445555555544


Q ss_pred             C
Q 007371          281 A  281 (606)
Q Consensus       281 ~  281 (606)
                      |
T Consensus       158 N  158 (208)
T 2o6s_A          158 N  158 (208)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.56  E-value=3.9e-14  Score=133.44  Aligned_cols=150  Identities=21%  Similarity=0.267  Sum_probs=128.2

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~  181 (606)
                      ..++.+++.+..+|.... ++|++|++++|.+..++...|..+++|++|++++|.+..+|. .+..+++|++|++++|.+
T Consensus        22 ~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIP-TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEccCCCcCccCCCCC-CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            467888888888887554 789999999999988877777899999999999999988775 468999999999999999


Q ss_pred             CC-C-cccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371          182 KD-I-AIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE  254 (606)
Q Consensus       182 ~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~  254 (606)
                      +. + ..+..+.+|++|++++|.++.+|..+..+++|++|++++|.. ..++...+..+++|++|++++|.+...
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~c~  174 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL-KSIPHGAFDRLSSLTHAYLFGNPWDCE  174 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCC-CCCCTTTTTTCTTCCEEECTTSCBCTT
T ss_pred             CccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcC-CccCHHHHhCCCCCCEEEeeCCCccCC
Confidence            88 4 557899999999999999999999999999999999999764 466655588999999999999976543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.56  E-value=1.6e-14  Score=146.20  Aligned_cols=149  Identities=19%  Similarity=0.205  Sum_probs=68.8

Q ss_pred             EEEecCCCCcccCCcccccccceeecccccccccchhHhc-CCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCC
Q 007371          104 AISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFK-GTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       104 ~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~  181 (606)
                      .++++++.+..+|... .+.++.|++++|.+..++...|. ++++|++|++++|.++.++ ..+.++++|++|++++|.+
T Consensus        22 ~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l  100 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSL-PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL  100 (361)
T ss_dssp             EEECCSSCCSSCCSSC-CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEeCCCCcCccCccC-CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcC
Confidence            4445555554444432 12344555555555544444443 4555555555555555433 2345555555555555554


Q ss_pred             CC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHh---hCCCCCCEEEccCCCCCCc
Q 007371          182 KD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVI---SKLSQLEELYMGNSFSGWE  254 (606)
Q Consensus       182 ~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i---~~l~~L~~L~l~~~~~~~~  254 (606)
                      +.  +..+..+.+|++|++++|.++.+ |..+..+++|++|++++|. +..+|...+   ..+++|++|++++|.+...
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            44  23344555555555555555443 2344455555555555433 233443322   3344555555555544433

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.55  E-value=3.7e-14  Score=150.62  Aligned_cols=191  Identities=18%  Similarity=0.132  Sum_probs=130.3

Q ss_pred             ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCC
Q 007371          123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARS  201 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~  201 (606)
                      +++.|+++++.+..+|..+   +++|++|++++|.++.+|   ..+++|++|++++|.++. |. +.+  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            7778888877777777755   367888888888887777   456788888888888777 44 554  7888888888


Q ss_pred             cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371          202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA  281 (606)
Q Consensus       202 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  281 (606)
                      .++.+|.   .+++|++|++++|... .+|.    .+++|++|++++|.+...+         . +.  ++|+.|++++|
T Consensus       131 ~l~~lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~L~~lp---------~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          131 QLTMLPE---LPALLEYINADNNQLT-MLPE----LPTSLEVLSVRNNQLTFLP---------E-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CCSCCCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSCCC---------C-CC--TTCCEEECCSS
T ss_pred             cCCCCCC---cCccccEEeCCCCccC-cCCC----cCCCcCEEECCCCCCCCcc---------h-hh--CCCCEEECcCC
Confidence            8877776   5778888888876543 4654    4677888888888776643         2 33  67888888887


Q ss_pred             CCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371          282 DAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV  361 (606)
Q Consensus       282 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  361 (606)
                      .+..+|. +.. +|                  ......|+.|+|++|.+. .  .|.++.. +++|+.|++++|.....+
T Consensus       191 ~L~~lp~-~~~-~L------------------~~~~~~L~~L~Ls~N~l~-~--lp~~l~~-l~~L~~L~L~~N~l~~~~  246 (571)
T 3cvr_A          191 LLESLPA-VPV-RN------------------HHSEETEIFFRCRENRIT-H--IPENILS-LDPTCTIILEDNPLSSRI  246 (571)
T ss_dssp             CCSSCCC-CC---------------------------CCEEEECCSSCCC-C--CCGGGGG-SCTTEEEECCSSSCCHHH
T ss_pred             CCCchhh-HHH-hh------------------hcccccceEEecCCCcce-e--cCHHHhc-CCCCCEEEeeCCcCCCcC
Confidence            7776665 221 11                  012233578888887764 2  3445555 688888888888777766


Q ss_pred             ccccc
Q 007371          362 VHELD  366 (606)
Q Consensus       362 ~~~l~  366 (606)
                      |..+.
T Consensus       247 p~~l~  251 (571)
T 3cvr_A          247 RESLS  251 (571)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=7.7e-14  Score=124.61  Aligned_cols=139  Identities=21%  Similarity=0.163  Sum_probs=104.9

Q ss_pred             CCCCCcEEEeeCCcCc--cCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCc-ccccccCCCCCCEEe
Q 007371          144 GTEGLKVLNFTRIHFS--SLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQ-LPLEIGQLTRLQLLD  220 (606)
Q Consensus       144 ~l~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~  220 (606)
                      ..++|++|++++|.++  .+|..+..+++|++|++++|.++....+..+++|++|++++|.++. +|..+.++++|++|+
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            3577888888888887  5887778888888888888887777777888888888888888886 666666788888888


Q ss_pred             cCCCccccccc--HHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371          221 LSNCWLLEVIA--PNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPN  289 (606)
Q Consensus       221 l~~~~~~~~~p--~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  289 (606)
                      +++|.. ..+|  .. ++.+++|++|++++|.+...+.     .....+..+++|++|++.+|....+|..
T Consensus       102 Ls~N~l-~~~~~~~~-l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          102 LSGNKL-KDISTLEP-LKKLECLKSLDLFNCEVTNLND-----YRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CBSSSC-CSSGGGGG-GSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             ccCCcc-CcchhHHH-HhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCccCcEecCCCCChhhcccc
Confidence            888754 4443  33 7888888888888887765541     0013677888888888888888777654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.50  E-value=5.4e-15  Score=149.83  Aligned_cols=199  Identities=11%  Similarity=0.138  Sum_probs=144.9

Q ss_pred             CCCeEEEecCCCCcccCC-----cc-ccc-ccceeecccccccccchhHhcCC-----CCCcEEEeeCCcCccCC-cc--
Q 007371          100 KDPIAISLTYGGIQVLPE-----RL-QCP-CLELLHTEGDGSMQVSDHFFKGT-----EGLKVLNFTRIHFSSLP-SS--  164 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~-----~~-~l~-~L~~L~~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~l~~lp-~~--  164 (606)
                      ..+++|++++|.+...+.     .. .++ +|++|++++|.+.......+..+     ++|++|++++|.++..+ ..  
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            459999999999977663     22 677 89999999998887654444544     99999999999998743 32  


Q ss_pred             --ccCC-CCCcEEEeeCCCCCC-C-cc----cCC-CCCCCEeeecCCcCC-----cccccccCCC-CCCEEecCCCcccc
Q 007371          165 --LGCL-INLQTLCLDYCRLKD-I-AI----VGQ-LKKLEILILARSTIK-----QLPLEIGQLT-RLQLLDLSNCWLLE  228 (606)
Q Consensus       165 --~~~l-~~L~~L~l~~~~~~~-~-~~----i~~-l~~L~~L~l~~~~l~-----~lp~~i~~L~-~L~~L~l~~~~~~~  228 (606)
                        +..+ ++|++|++++|.++. + ..    +.. ..+|++|++++|.++     .++..+..++ +|++|++++|....
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence              4455 899999999999877 2 33    444 369999999999888     5566667776 99999999987655


Q ss_pred             cccHH---HhhCC-CCCCEEEccCCCCCCccccCCCccchHhhccC-CCCCEEEEeeCCCCCCCccc------cccCCcE
Q 007371          229 VIAPN---VISKL-SQLEELYMGNSFSGWEKVEGGSNASLVELERL-TKLATLEIEVADAEILPPNF------VSVELQR  297 (606)
Q Consensus       229 ~~p~~---~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~------~~~~L~~  297 (606)
                      ..+..   .+..+ ++|++|++++|.+.....    ......+... ++|++|++++|.+...+...      ..++|+.
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~  257 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSY----AELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQT  257 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCH----HHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHH----HHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccE
Confidence            54432   24455 599999999998765321    1233556664 59999999999987655421      1155666


Q ss_pred             EEEEe
Q 007371          298 YRIRI  302 (606)
Q Consensus       298 L~l~~  302 (606)
                      |++..
T Consensus       258 L~L~~  262 (362)
T 3goz_A          258 VYLDY  262 (362)
T ss_dssp             EEEEH
T ss_pred             EEecc
Confidence            66643

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.50  E-value=3.5e-16  Score=167.04  Aligned_cols=179  Identities=20%  Similarity=0.202  Sum_probs=123.6

Q ss_pred             CCCeEEEecCCCCcccCCcc-cccccceeeccccc-------------ccccchhHhcCCCCCcEEE-eeCCcCccCCc-
Q 007371          100 KDPIAISLTYGGIQVLPERL-QCPCLELLHTEGDG-------------SMQVSDHFFKGTEGLKVLN-FTRIHFSSLPS-  163 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~~~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~l~~lp~-  163 (606)
                      +.+++|++++|.++.+|..+ .+++|+.|+++++.             ....+...+..+++|+.|+ ++.+.+..++. 
T Consensus       349 ~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l  428 (567)
T 1dce_A          349 EQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK  428 (567)
T ss_dssp             TTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             ccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhh
Confidence            56677788888887777766 77788887765553             2223333346667777776 44443322211 


Q ss_pred             -----cccC--CCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhh
Q 007371          164 -----SLGC--LINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVIS  236 (606)
Q Consensus       164 -----~~~~--l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~  236 (606)
                           .+..  ...|++|++++|.++.++.++.+++|++|++++|.++.+|..++++++|++|++++|... .+| . ++
T Consensus       429 ~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-~lp-~-l~  505 (567)
T 1dce_A          429 FLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALE-NVD-G-VA  505 (567)
T ss_dssp             HHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCC-CCG-G-GT
T ss_pred             hhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCC-CCc-c-cC
Confidence                 0111  124788888888887733388888888888888888888888888888888888886644 466 4 78


Q ss_pred             CCCCCCEEEccCCCCCCcc-ccCCCccchHhhccCCCCCEEEEeeCCCCCCCcc
Q 007371          237 KLSQLEELYMGNSFSGWEK-VEGGSNASLVELERLTKLATLEIEVADAEILPPN  289 (606)
Q Consensus       237 ~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  289 (606)
                      .+++|++|++++|.+.... +        ..++.+++|+.|++++|.+..+|..
T Consensus       506 ~l~~L~~L~Ls~N~l~~~~~p--------~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          506 NLPRLQELLLCNNRLQQSAAI--------QPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             TCSSCCEEECCSSCCCSSSTT--------GGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCcEEECCCCCCCCCCCc--------HHHhcCCCCCEEEecCCcCCCCccH
Confidence            8888888888888877663 3        6778888888888888887766553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.48  E-value=1.2e-13  Score=139.74  Aligned_cols=152  Identities=22%  Similarity=0.272  Sum_probs=131.9

Q ss_pred             CCCeEEEecCCCCcccCCcc---cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEE
Q 007371          100 KDPIAISLTYGGIQVLPERL---QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLC  175 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~---~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~  175 (606)
                      ..++.|++++|.+..++...   .+++|++|++++|.+..++...|..+++|++|++++|.++.++. .+.++.+|++|+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEE
Confidence            45789999999998877654   78999999999999999998878999999999999999999654 689999999999


Q ss_pred             eeCCCCCC--CcccCCCCCCCEeeecCCcCCcccccc----cCCCCCCEEecCCCcccccccHHHhhCCCC--CCEEEcc
Q 007371          176 LDYCRLKD--IAIVGQLKKLEILILARSTIKQLPLEI----GQLTRLQLLDLSNCWLLEVIAPNVISKLSQ--LEELYMG  247 (606)
Q Consensus       176 l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~i----~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~--L~~L~l~  247 (606)
                      +++|.+..  +..+..+++|++|++++|.++.+|..+    ..+++|++|++++|. +..+|...+..++.  |+.|+++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~~~l~~l~l~  197 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQKLPAWVKNGLYLH  197 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHHHSCHHHHTTEECC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhhhccHhhcceEEec
Confidence            99999988  678999999999999999999999876    679999999999976 45677655888887  4889999


Q ss_pred             CCCCC
Q 007371          248 NSFSG  252 (606)
Q Consensus       248 ~~~~~  252 (606)
                      +|.+.
T Consensus       198 ~N~~~  202 (361)
T 2xot_A          198 NNPLE  202 (361)
T ss_dssp             SSCEE
T ss_pred             CCCcc
Confidence            88764

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.46  E-value=2.3e-13  Score=121.47  Aligned_cols=131  Identities=22%  Similarity=0.192  Sum_probs=86.0

Q ss_pred             cccceeeccccccc--ccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEee
Q 007371          122 PCLELLHTEGDGSM--QVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILI  197 (606)
Q Consensus       122 ~~L~~L~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~  197 (606)
                      ++|++|++++|.+.  .+|.. +..+++|++|++++|.++.+ ..++.+++|++|++++|.+..  |..+.++++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            34555555555544  45543 35667777777777777666 566777777777777777666  34445577777777


Q ss_pred             ecCCcCCccc--ccccCCCCCCEEecCCCcccccccH---HHhhCCCCCCEEEccCCCCCCcc
Q 007371          198 LARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAP---NVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       198 l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~---~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      +++|.++.+|  ..+..+++|++|++++|... .+|.   ..+..+++|++|++++|.....+
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            7777777665  56777777777777776543 3343   23777788888887777665443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.42  E-value=7.6e-13  Score=120.82  Aligned_cols=125  Identities=18%  Similarity=0.206  Sum_probs=85.9

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCcc--ccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSS--LGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILAR  200 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~--~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~  200 (606)
                      ++++++++.+..+|..+   ..++++|++++|.++.++..  ++.+++|++|++++|.++.  |..+..+.+|++|++++
T Consensus        11 ~~l~~s~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcCccCC---CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            56666666666666654   23677777777777775543  6777777777777777776  46677777777777777


Q ss_pred             CcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371          201 STIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       201 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      |.++.++.. +..+++|++|++++|...+..|.. ++.+++|++|++++|.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGS-FEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTS-STTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHH-hhcCCCCCEEEeCCCCccC
Confidence            777766543 667777777777776655555544 6777777777777776543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.41  E-value=4.2e-13  Score=117.18  Aligned_cols=106  Identities=22%  Similarity=0.169  Sum_probs=53.2

Q ss_pred             CCCcEEEeeCCcCc--cCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCc-ccccccCCCCCCEEecC
Q 007371          146 EGLKVLNFTRIHFS--SLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQ-LPLEIGQLTRLQLLDLS  222 (606)
Q Consensus       146 ~~L~~L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~-lp~~i~~L~~L~~L~l~  222 (606)
                      ++|+.|++++|.++  .+|..++.+++|++|++++|.++....++++++|++|++++|.++. +|..++.+++|++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            44555555555554  3555455555555555555554444445555555555555555554 44444445555555555


Q ss_pred             CCccccccc--HHHhhCCCCCCEEEccCCCCCC
Q 007371          223 NCWLLEVIA--PNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       223 ~~~~~~~~p--~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      +|... .++  .. ++.+++|++|++++|.+..
T Consensus        97 ~N~i~-~~~~~~~-~~~l~~L~~L~l~~N~l~~  127 (149)
T 2je0_A           97 GNKIK-DLSTIEP-LKKLENLKSLDLFNCEVTN  127 (149)
T ss_dssp             TSCCC-SHHHHGG-GGGCTTCCEEECTTCGGGG
T ss_pred             CCcCC-ChHHHHH-HhhCCCCCEEeCcCCcccc
Confidence            54422 221  22 4555555555555554433

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.40  E-value=3.9e-13  Score=117.39  Aligned_cols=125  Identities=25%  Similarity=0.239  Sum_probs=102.7

Q ss_pred             cccccceeeccccccc--ccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCE
Q 007371          120 QCPCLELLHTEGDGSM--QVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEI  195 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~  195 (606)
                      ..++++.|+++++.+.  .+|.. +..+++|++|++++|.++.+ ..++++++|++|++++|.++.  |..++.+++|++
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CCccCeEEEccCCcCChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            3468999999988877  67764 47899999999999998888 778899999999999999887  455667999999


Q ss_pred             eeecCCcCCccc--ccccCCCCCCEEecCCCcccccccH---HHhhCCCCCCEEEcc
Q 007371          196 LILARSTIKQLP--LEIGQLTRLQLLDLSNCWLLEVIAP---NVISKLSQLEELYMG  247 (606)
Q Consensus       196 L~l~~~~l~~lp--~~i~~L~~L~~L~l~~~~~~~~~p~---~~i~~l~~L~~L~l~  247 (606)
                      |++++|.++.+|  ..++.+++|++|++++|... .+|.   ..++.+++|++|+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT-NLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGG-GSTTHHHHHHHHCTTCCEETTB
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCccc-chHHHHHHHHHHCCCcccccCC
Confidence            999999998765  78899999999999997654 4443   348889999998765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.40  E-value=6.5e-14  Score=154.31  Aligned_cols=154  Identities=16%  Similarity=0.137  Sum_probs=90.1

Q ss_pred             CCCeEEEecCCCCcccCCcc-cccccceee-----cccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcE
Q 007371          100 KDPIAISLTYGGIQVLPERL-QCPCLELLH-----TEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQT  173 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~-~l~~L~~L~-----~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~  173 (606)
                      ..++.|++..+.+...+... ...+|+.+.     ...+... ++...|..++.|++|+|++|.+..+|..+.++.+|++
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR  251 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence            44667777777665544333 333333333     2233333 4445567788888888888888888887778888888


Q ss_pred             EEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCC
Q 007371          174 LCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG  252 (606)
Q Consensus       174 L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~  252 (606)
                      |+|++|.++. |..++++.+|++|+|++|.++.+|..+++|++|++|++++|. ++.+|.. ++++++|++|++++|.+.
T Consensus       252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~-~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNM-VTTLPWE-FGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSC-CCCCCSS-TTSCTTCCCEECTTSCCC
T ss_pred             EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCC-CCccChh-hhcCCCccEEeCCCCccC
Confidence            8888888777 777888888888888888888888888888888888888865 4577777 788888888888888776


Q ss_pred             Cccc
Q 007371          253 WEKV  256 (606)
Q Consensus       253 ~~~~  256 (606)
                      ..++
T Consensus       330 ~~~p  333 (727)
T 4b8c_D          330 KQFL  333 (727)
T ss_dssp             SHHH
T ss_pred             CCCh
Confidence            6554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=8.4e-13  Score=118.77  Aligned_cols=134  Identities=14%  Similarity=0.194  Sum_probs=72.1

Q ss_pred             cCCCCCcEEEeeCCcCccCCccccCCC-CCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccc-cCCCCCCEEe
Q 007371          143 KGTEGLKVLNFTRIHFSSLPSSLGCLI-NLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEI-GQLTRLQLLD  220 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~lp~~~~~l~-~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~  220 (606)
                      .++.+|++|++++|.++.+|. +..+. +|++|++++|.++.+..++.+++|++|++++|.++.+|..+ +.+++|++|+
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            445556666666665555543 33333 56666666665555445555666666666666666555444 5566666666


Q ss_pred             cCCCcccccccH-HHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCC
Q 007371          221 LSNCWLLEVIAP-NVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADA  283 (606)
Q Consensus       221 l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~  283 (606)
                      +++|.. +.+|. ..++.+++|++|++++|.+...+.     .....++.+++|+.|+++.+..
T Consensus        95 L~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~-----~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           95 LTNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKH-----YRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTT-----HHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCcC-CcchhhHhhhcCCCCCEEEecCCCCCCcHh-----HHHHHHHHCCccceeCCCcCCH
Confidence            666443 44443 115566666666666665543321     0011355666666666665543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.39  E-value=2e-12  Score=118.05  Aligned_cols=128  Identities=19%  Similarity=0.224  Sum_probs=113.0

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchh-HhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDH-FFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~  180 (606)
                      +.++++++.++.+|.... .++++|++++|.+..++.. +|..+++|++|++++|.++.+ |..+.++++|++|++++|.
T Consensus        11 ~~l~~s~~~l~~ip~~~~-~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC-TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             CEEEcCCCCcCcCccCCC-CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc
Confidence            678999999999988652 3899999999999888764 568999999999999999994 7889999999999999999


Q ss_pred             CCC--CcccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCCCccccccc
Q 007371          181 LKD--IAIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIA  231 (606)
Q Consensus       181 ~~~--~~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p  231 (606)
                      ++.  +..+..+++|++|++++|.++.+ |..+..+++|++|++++|......+
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            998  46699999999999999999966 7789999999999999988765544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.38  E-value=2.8e-12  Score=117.03  Aligned_cols=123  Identities=20%  Similarity=0.295  Sum_probs=87.6

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCc
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARST  202 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~  202 (606)
                      ++++.+++.+..+|..+   .++|++|++++|.++.+|..+.++.+|++|++++|.++.  +..+..+++|++|++++|.
T Consensus        13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence            45666667777777654   357778888888877777777778888888888887777  3567777888888888877


Q ss_pred             CCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCC
Q 007371          203 IKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFS  251 (606)
Q Consensus       203 l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~  251 (606)
                      ++.+|. .+..+++|++|++++|.. ..+|...+..+++|++|++++|.+
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDI-SVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCC-CBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCC-CeeChhhhhcCccccEEEeCCCCe
Confidence            776654 467777777777777553 455554466777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.35  E-value=1.8e-13  Score=150.71  Aligned_cols=147  Identities=19%  Similarity=0.185  Sum_probs=115.4

Q ss_pred             ecCCCCcccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C
Q 007371          107 LTYGGIQVLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I  184 (606)
Q Consensus       107 l~~~~~~~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~  184 (606)
                      +..|.+...+... .+++|+.|++++|.+..+|..++ ++++|++|+|++|.++.+|..++++++|++|+|++|.++. |
T Consensus       208 ~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp  286 (727)
T 4b8c_D          208 DIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP  286 (727)
T ss_dssp             --------------CCCCCCEEECTTSCCSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCC
T ss_pred             ccccceecChhhhccCCCCcEEECCCCCCCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccC
Confidence            3334443334444 78899999999999999998885 7999999999999999999999999999999999999988 8


Q ss_pred             cccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCC-CCEEEccCCCCCCcc
Q 007371          185 AIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQ-LEELYMGNSFSGWEK  255 (606)
Q Consensus       185 ~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~-L~~L~l~~~~~~~~~  255 (606)
                      ..++++.+|++|+|++|.++.+|..++++++|++|++++|...+.+|.. +..+.. +..+++++|.+....
T Consensus       287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~-~~~~~~~~~~l~l~~N~l~~~~  357 (727)
T 4b8c_D          287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKI-LTEKSVTGLIFYLRDNRPEIPL  357 (727)
T ss_dssp             SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHH-HHHHHHHHHHHHHHHCCCCCCC
T ss_pred             hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHH-HhhcchhhhHHhhccCcccCcC
Confidence            8999999999999999999999999999999999999998877777765 443321 223566667665444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.35  E-value=6.5e-12  Score=114.56  Aligned_cols=123  Identities=24%  Similarity=0.333  Sum_probs=109.3

Q ss_pred             eEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCC
Q 007371          103 IAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       103 ~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~  181 (606)
                      +.++++++.+..+|... .+++++|++++|.+..+|.. |..+++|++|++++|.++.++ ..|.++.+|++|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            47889999999888755 36899999999999999954 589999999999999999965 5789999999999999999


Q ss_pred             CC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCccc
Q 007371          182 KD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCWLL  227 (606)
Q Consensus       182 ~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~~~  227 (606)
                      +.  +..+..+++|++|++++|.++.+|.. +..+++|++|++++|...
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            88  46799999999999999999999874 788999999999998654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.34  E-value=1.4e-12  Score=117.31  Aligned_cols=130  Identities=18%  Similarity=0.117  Sum_probs=94.7

Q ss_pred             ccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-Ccc-cCCCCCCCEe
Q 007371          119 LQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAI-VGQLKKLEIL  196 (606)
Q Consensus       119 ~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~-i~~l~~L~~L  196 (606)
                      ..+++|+.|++++|.+..++. +....++|++|++++|.++.+ ..++.+++|++|++++|.++. |+. +..+++|++|
T Consensus        16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   93 (176)
T ss_dssp             ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence            356677777777777666654 323334888888888888777 567788888888888888777 543 4788888888


Q ss_pred             eecCCcCCcccc--cccCCCCCCEEecCCCcccccccHH---HhhCCCCCCEEEccCCCC
Q 007371          197 ILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIAPN---VISKLSQLEELYMGNSFS  251 (606)
Q Consensus       197 ~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p~~---~i~~l~~L~~L~l~~~~~  251 (606)
                      ++++|.+..+|.  .+..+++|++|++++|... .+|..   .++.+++|+.|+++.+..
T Consensus        94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            888888887776  7778888888888886643 45542   477888888888877754

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.34  E-value=8.5e-12  Score=112.29  Aligned_cols=127  Identities=20%  Similarity=0.330  Sum_probs=83.1

Q ss_pred             cceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecC
Q 007371          124 LELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILAR  200 (606)
Q Consensus       124 L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~  200 (606)
                      .+.++.+++....+|..+   .++|++|++++|.++.+|. .++.+++|++|++++|.++. + ..+..+++|++|++++
T Consensus         9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence            355556666666666543   3567777777777766544 35667777777777777766 3 4456777777777777


Q ss_pred             CcCCccccc-ccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371          201 STIKQLPLE-IGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE  254 (606)
Q Consensus       201 ~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~  254 (606)
                      |.++.+|.. +..+++|++|++++|.. ..+|...+..+++|++|++++|.+...
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcc-eEeCHHHhcCCcccCEEEecCCCeecc
Confidence            777766654 46677777777777643 355555456677777777777766544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.33  E-value=1.3e-12  Score=139.45  Aligned_cols=151  Identities=19%  Similarity=0.179  Sum_probs=119.7

Q ss_pred             cccccceee-cccccccccchhHh-----c--CCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCC
Q 007371          120 QCPCLELLH-TEGDGSMQVSDHFF-----K--GTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQL  190 (606)
Q Consensus       120 ~l~~L~~L~-~~~~~~~~~~~~~~-----~--~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l  190 (606)
                      .+++|+.|+ +..+....++...+     .  ....|++|++++|.++.+|. ++++++|++|++++|.++. |..++++
T Consensus       407 ~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l  485 (567)
T 1dce_A          407 YFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAAL  485 (567)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGC
T ss_pred             HHHhcccCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcC
Confidence            667777777 55543333322100     0  12359999999999999987 9999999999999999999 8999999


Q ss_pred             CCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccc-cHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhcc
Q 007371          191 KKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVI-APNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELER  269 (606)
Q Consensus       191 ~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~-p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~  269 (606)
                      ++|++|++++|.++.+| .++++++|++|++++|...+.. |.. ++.+++|++|++++|.+...++.     ....+..
T Consensus       486 ~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~-l~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~~  558 (567)
T 1dce_A          486 RCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSAAIQP-LVSCPRLVLLNLQGNSLCQEEGI-----QERLAEM  558 (567)
T ss_dssp             TTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSSTTGG-GGGCTTCCEEECTTSGGGGSSSC-----TTHHHHH
T ss_pred             CCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCCCcHH-HhcCCCCCEEEecCCcCCCCccH-----HHHHHHH
Confidence            99999999999999998 8999999999999998765554 777 99999999999999998776541     1233455


Q ss_pred             CCCCCEEEE
Q 007371          270 LTKLATLEI  278 (606)
Q Consensus       270 l~~L~~L~l  278 (606)
                      +++|+.|++
T Consensus       559 lp~L~~L~l  567 (567)
T 1dce_A          559 LPSVSSILT  567 (567)
T ss_dssp             CTTCSEEEC
T ss_pred             CcccCccCC
Confidence            788888853

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.27  E-value=4e-11  Score=107.82  Aligned_cols=126  Identities=23%  Similarity=0.286  Sum_probs=106.4

Q ss_pred             CcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCC
Q 007371          148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNC  224 (606)
Q Consensus       148 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~  224 (606)
                      .+.++++++.++.+|..+.  .+|++|++++|.++. + ..+.++++|++|++++|.++.+|.. +..+++|++|++++|
T Consensus         9 ~~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            4788999999999886554  689999999999988 4 5678999999999999999988765 589999999999997


Q ss_pred             cccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          225 WLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       225 ~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      ... .+|...++.+++|++|++++|.+...++        ..+..+++|++|++++|.+.
T Consensus        87 ~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           87 KLQ-SLPNGVFDKLTQLKELALDTNQLKSVPD--------GIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCC-CCCTTTTTTCTTCCEEECCSSCCSCCCT--------TTTTTCTTCCEEECCSSCBC
T ss_pred             Ccc-ccCHHHhhCCcccCEEECcCCcceEeCH--------HHhcCCcccCEEEecCCCee
Confidence            654 5555547899999999999999886664        45688999999999988764

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.23  E-value=3.9e-13  Score=123.49  Aligned_cols=104  Identities=17%  Similarity=0.259  Sum_probs=53.5

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA  199 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~  199 (606)
                      .+++|++|++++|.+..+| . +..+++|++|++++|.++.+|..+..+++|++|++++|.++.++.+..+++|++|+++
T Consensus        46 ~l~~L~~L~ls~n~l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~  123 (198)
T 1ds9_A           46 TLKACKHLALSTNNIEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             HTTTCSEEECSEEEESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEES
T ss_pred             cCCCCCEEECCCCCCcccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEECC
Confidence            4455555555555555544 2 3445555555555555555555444455555555555555552244455555555555


Q ss_pred             CCcCCcccc--cccCCCCCCEEecCCCc
Q 007371          200 RSTIKQLPL--EIGQLTRLQLLDLSNCW  225 (606)
Q Consensus       200 ~~~l~~lp~--~i~~L~~L~~L~l~~~~  225 (606)
                      +|.++.+|.  .+..+++|++|++++|.
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          124 NNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             CCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence            555554432  44555555555555544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.21  E-value=2.7e-13  Score=124.55  Aligned_cols=140  Identities=21%  Similarity=0.255  Sum_probs=107.4

Q ss_pred             ccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccC
Q 007371          134 SMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQ  212 (606)
Q Consensus       134 ~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~  212 (606)
                      +..+|.. +..+++|++|++++|.++.+| .+.++++|++|++++|.++. |..+..+++|++|++++|.++.+| .++.
T Consensus        37 l~~l~~~-~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~  113 (198)
T 1ds9_A           37 IEKMDAT-LSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEK  113 (198)
T ss_dssp             CCCCHHH-HHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHH
T ss_pred             HhhhhHH-HhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cccc
Confidence            3445544 478999999999999999888 88999999999999999888 777777899999999999999887 6888


Q ss_pred             CCCCCEEecCCCcccccccH-HHhhCCCCCCEEEccCCCCCCccccCC--CccchHhhccCCCCCEEE
Q 007371          213 LTRLQLLDLSNCWLLEVIAP-NVISKLSQLEELYMGNSFSGWEKVEGG--SNASLVELERLTKLATLE  277 (606)
Q Consensus       213 L~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~~~l~~l~~L~~L~  277 (606)
                      +++|++|++++|.. ..++. ..+..+++|++|++++|.+....+...  .......+..+++|+.|+
T Consensus       114 l~~L~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          114 LVNLRVLYMSNNKI-TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHSSEEEESEEEC-CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CCCCCEEECCCCcC-CchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            99999999998754 44443 338899999999999987654432100  001113477888888886

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.14  E-value=1e-10  Score=116.52  Aligned_cols=78  Identities=17%  Similarity=0.201  Sum_probs=49.1

Q ss_pred             CCCeEEEecCCCCc--------------------ccCCcc--c--------ccccceeecccccccccchhHhcCCCCCc
Q 007371          100 KDPIAISLTYGGIQ--------------------VLPERL--Q--------CPCLELLHTEGDGSMQVSDHFFKGTEGLK  149 (606)
Q Consensus       100 ~~l~~L~l~~~~~~--------------------~l~~~~--~--------l~~L~~L~~~~~~~~~~~~~~~~~l~~L~  149 (606)
                      ++++.|++++|.+.                    .++...  .        +++|+.+.+.+ .+..++...|..+++|+
T Consensus        49 ~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~  127 (329)
T 3sb4_A           49 PSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLK  127 (329)
T ss_dssp             TTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCC
T ss_pred             ccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccc
Confidence            77999999999886                    233332  4        66677777666 56666666667777777


Q ss_pred             EEEeeCCcCccCC-ccccCCCCCcEEEeeC
Q 007371          150 VLNFTRIHFSSLP-SSLGCLINLQTLCLDY  178 (606)
Q Consensus       150 ~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~  178 (606)
                      .+++..|.+..++ ..|..+.++.++....
T Consensus       128 ~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~  157 (329)
T 3sb4_A          128 ICQIRKKTAPNLLPEALADSVTAIFIPLGS  157 (329)
T ss_dssp             EEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred             eEEcCCCCccccchhhhcCCCceEEecCcc
Confidence            7777777665533 3455555555554433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.12  E-value=4.1e-10  Score=100.66  Aligned_cols=102  Identities=23%  Similarity=0.391  Sum_probs=57.7

Q ss_pred             cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCc
Q 007371          149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCW  225 (606)
Q Consensus       149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~  225 (606)
                      +.++++++.+..+|..+.  .+|++|++++|.++.  |..+.++++|++|++++|+++.+|.. +.++++|++|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            455666666655555443  556666666666555  34556666666666666666666554 3556666666666644


Q ss_pred             ccccccHHHhhCCCCCCEEEccCCCCCC
Q 007371          226 LLEVIAPNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       226 ~~~~~p~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      . ..+|...++.+++|++|++++|.+..
T Consensus        93 l-~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           93 L-KSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             C-CCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             c-ceeCHHHhccccCCCEEEeCCCCccc
Confidence            3 34444335566666666666665443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=3.8e-10  Score=100.51  Aligned_cols=101  Identities=21%  Similarity=0.310  Sum_probs=52.3

Q ss_pred             cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCccccc-ccCCCCCCEEecCCCc
Q 007371          149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPLE-IGQLTRLQLLDLSNCW  225 (606)
Q Consensus       149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~~-i~~L~~L~~L~l~~~~  225 (606)
                      ++++++++.++.+|..+.  .+|++|++++|.++.  +..+.++.+|++|++++|+++.+|.. +..+++|++|++++|.
T Consensus        12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~   89 (170)
T 3g39_A           12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ   89 (170)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence            445555555555554442  455555555555554  34455555555555555555555443 2455555555555543


Q ss_pred             ccccccHHHhhCCCCCCEEEccCCCCC
Q 007371          226 LLEVIAPNVISKLSQLEELYMGNSFSG  252 (606)
Q Consensus       226 ~~~~~p~~~i~~l~~L~~L~l~~~~~~  252 (606)
                      . ..+|...++.+++|++|++++|.+.
T Consensus        90 l-~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           90 L-KSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             C-CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             c-CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            2 3333333555555555555555443

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.11  E-value=3.7e-10  Score=100.91  Aligned_cols=100  Identities=21%  Similarity=0.255  Sum_probs=81.7

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARS  201 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~  201 (606)
                      +.++++++.+..+|..+   .++|++|++++|.++.+ |..++++++|++|++++|.++. | ..+.++++|++|++++|
T Consensus        15 ~~l~~~~n~l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            56777888888888765   37888999999988885 6678888999999999998888 4 44688899999999999


Q ss_pred             cCCccccc-ccCCCCCCEEecCCCccc
Q 007371          202 TIKQLPLE-IGQLTRLQLLDLSNCWLL  227 (606)
Q Consensus       202 ~l~~lp~~-i~~L~~L~~L~l~~~~~~  227 (606)
                      .++.+|.. +..+++|++|++++|...
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            88888875 788999999999887643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=4.2e-10  Score=112.06  Aligned_cols=106  Identities=13%  Similarity=0.068  Sum_probs=56.5

Q ss_pred             CCCCcEEEeeCCcCccCCccccC-CCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccc-cccC--------C
Q 007371          145 TEGLKVLNFTRIHFSSLPSSLGC-LINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPL-EIGQ--------L  213 (606)
Q Consensus       145 l~~L~~L~l~~~~l~~lp~~~~~-l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~--------L  213 (606)
                      +.+++.|.++++--..-...+.. +.+|++|++++|.+.. ...-+.+..++.+.+..+   .+|. .+.+        +
T Consensus        24 ~~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~---~I~~~aF~~~~~~~~~g~  100 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMAN---FVPAYAFSNVVNGVTKGK  100 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTT---EECTTTTEEEETTEEEEC
T ss_pred             hCceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEecCcccccccccccccccc---ccCHHHhccccccccccc
Confidence            45677777776521110112222 6778888888887663 111112222344444433   2332 2334        7


Q ss_pred             CCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCcc
Q 007371          214 TRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       214 ~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      ++|+.|.+.+  .+..++...+..+++|+.+++..+.+....
T Consensus       101 ~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~  140 (329)
T 3sb4_A          101 QTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKTAPNLL  140 (329)
T ss_dssp             TTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSSCCEEC
T ss_pred             CCCcEEECCc--cccchhHHHhhcCcccceEEcCCCCccccc
Confidence            7777777766  345566555677777777777766654443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.06  E-value=7.8e-10  Score=98.46  Aligned_cols=104  Identities=21%  Similarity=0.211  Sum_probs=85.0

Q ss_pred             ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeec
Q 007371          123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILA  199 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~  199 (606)
                      ..++++++++.+..+|..+   .++|++|++++|.++.+ |..+.++.+|++|++++|.++. + ..+.++++|++|+++
T Consensus        10 ~~~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            3567788888888888755   47889999999999885 6678889999999999999888 4 456889999999999


Q ss_pred             CCcCCccccc-ccCCCCCCEEecCCCccccc
Q 007371          200 RSTIKQLPLE-IGQLTRLQLLDLSNCWLLEV  229 (606)
Q Consensus       200 ~~~l~~lp~~-i~~L~~L~~L~l~~~~~~~~  229 (606)
                      +|.++.+|.. +..+++|++|++++|.....
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999988764 78899999999998765433

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.87  E-value=2.9e-10  Score=114.69  Aligned_cols=192  Identities=16%  Similarity=0.133  Sum_probs=93.6

Q ss_pred             CCCCChHhHHHHhhhhhcCCCChhhHHHHHhhhccCCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcC
Q 007371           65 IDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKG  144 (606)
Q Consensus        65 l~~L~~~~~~~Lf~~~~~~~~~~~~l~~~~~di~~~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~  144 (606)
                      .+.++.+++.++|.-... .    +-..+..++. +.++.|++++|.+......                 .+...+...
T Consensus        43 ~~~~~~~~~lnl~~cl~e-~----~~~~l~~~~~-~~L~~L~Ls~n~l~~~~~~-----------------~l~~~L~~~   99 (372)
T 3un9_A           43 RQVLPPSELLDHLFFHYE-F----QNQRFSAEVL-SSLRQLNLAGVRMTPVKCT-----------------VVAAVLGSG   99 (372)
T ss_dssp             CCCSCHHHHHHHHHHHHH-H----HTHHHHHHHH-TTCCEEECTTSCCCHHHHH-----------------HHHHHHSSC
T ss_pred             ccCCChhhhHHHHHHHHH-h----cCHHHHHHHH-hhCCEEEecCCCCCHHHHH-----------------HHHHHHhhC
Confidence            345777778887764211 0    0011222222 6688888888877432110                 011111112


Q ss_pred             CCCCcEEEeeCCcCcc--CCccccCCCCCcEEEeeCCCCCC--Cccc-----CCCCCCCEeeecCCcCC-----cccccc
Q 007371          145 TEGLKVLNFTRIHFSS--LPSSLGCLINLQTLCLDYCRLKD--IAIV-----GQLKKLEILILARSTIK-----QLPLEI  210 (606)
Q Consensus       145 l~~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~--~~~i-----~~l~~L~~L~l~~~~l~-----~lp~~i  210 (606)
                      .++|++|++++|.+..  +......+.+|++|++++|.+++  ...+     ...++|++|++++|.++     .++..+
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            2455555555555543  11122234455566666665544  2222     23455666666666554     234444


Q ss_pred             cCCCCCCEEecCCCcccc----cccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          211 GQLTRLQLLDLSNCWLLE----VIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       211 ~~L~~L~~L~l~~~~~~~----~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      ..+++|++|++++|....    .++.. +...++|++|++++|.+.....    ......+...++|++|++++|.+.
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~-L~~~~~L~~L~Ls~N~i~~~g~----~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQ-LDRNRQLQELNVAYNGAGDTAA----LALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHH-GGGCSCCCEEECCSSCCCHHHH----HHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHH-HhcCCCcCeEECCCCCCCHHHH----HHHHHHHHhCCCCCEEeccCCCCC
Confidence            556666666666654322    12222 4555666666666665543211    122244555566677777666654

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.79  E-value=9e-08  Score=97.44  Aligned_cols=233  Identities=13%  Similarity=0.123  Sum_probs=104.2

Q ss_pred             ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeec
Q 007371          123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILA  199 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~  199 (606)
                      +|+.+.+.++ +..++...|.++ +|+.+.+.. .+..++ ..|.++.+|+.+++..+.++. + ..+. ..+|+.+.+.
T Consensus       136 ~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp  211 (401)
T 4fdw_A          136 QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLP  211 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECC
T ss_pred             CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeC
Confidence            4555554443 444444445442 455555553 344422 345555555555555555444 2 2222 3555555554


Q ss_pred             CCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEE
Q 007371          200 RSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEI  278 (606)
Q Consensus       200 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l  278 (606)
                      . .++.++. .+.++++|+.+.+..+  +..++...+.+ .+|+.+.+..+ +.....        ..+.++++|+.+.+
T Consensus       212 ~-~l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L~~i~lp~~-i~~I~~--------~aF~~c~~L~~l~l  278 (401)
T 4fdw_A          212 V-TLKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGITTVKLPNG-VTNIAS--------RAFYYCPELAEVTT  278 (401)
T ss_dssp             T-TCCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCCSEEEEETT-CCEECT--------TTTTTCTTCCEEEE
T ss_pred             C-chheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCccEEEeCCC-ccEECh--------hHhhCCCCCCEEEe
Confidence            3 2444432 3445555555555542  33344333333 45555555322 222211        34455555555555


Q ss_pred             eeCCCC-----CCCcccc--ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhcccccee
Q 007371          279 EVADAE-----ILPPNFV--SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLW  351 (606)
Q Consensus       279 ~~~~~~-----~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~  351 (606)
                      ..+...     .++....  ..+|+.+.+.  +....-....+..|.+|+.+.+..+  ...+.  ......+ +|+.+.
T Consensus       279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~--~~i~~I~~~aF~~c~~L~~l~lp~~--l~~I~--~~aF~~~-~L~~l~  351 (401)
T 4fdw_A          279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIP--ESIRILGQGLLGGNRKVTQLTIPAN--VTQIN--FSAFNNT-GIKEVK  351 (401)
T ss_dssp             ESSCCCCCTTCEECTTTTTTCTTCCEECCC--TTCCEECTTTTTTCCSCCEEEECTT--CCEEC--TTSSSSS-CCCEEE
T ss_pred             CCccccCCcccEECHHHhhCCccCCeEEeC--CceEEEhhhhhcCCCCccEEEECcc--ccEEc--HHhCCCC-CCCEEE
Confidence            544332     2333221  1455555442  1111112234555666666666442  11111  1111123 677777


Q ss_pred             cccccCcccccccccCCCCCC-CCcEEEeecC
Q 007371          352 LETLEGVQSVVHELDDGEGFP-RLKHLHVKSC  382 (606)
Q Consensus       352 l~~~~~~~~~~~~l~~~~~l~-~L~~L~l~~c  382 (606)
                      +.++.........|.   +++ +++.|.+-..
T Consensus       352 l~~n~~~~l~~~~F~---~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          352 VEGTTPPQVFEKVWY---GFPDDITVIRVPAE  380 (401)
T ss_dssp             ECCSSCCBCCCSSCC---CSCTTCCEEEECGG
T ss_pred             EcCCCCccccccccc---CCCCCccEEEeCHH
Confidence            776543322222232   453 6677776543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.76  E-value=2.1e-07  Score=94.63  Aligned_cols=236  Identities=12%  Similarity=0.065  Sum_probs=166.0

Q ss_pred             ccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEee
Q 007371          121 CPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILI  197 (606)
Q Consensus       121 l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~  197 (606)
                      +..++.+.+.+. ...++...|.++ +|+.+.+..+ ++.++. .|.+ .+|+.+.+.. .+..  ...+.++.+|+.++
T Consensus       112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred             cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence            355666666543 556777778875 7999998876 666544 5555 4799999986 5555  57899999999999


Q ss_pred             ecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEE
Q 007371          198 LARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE  277 (606)
Q Consensus       198 l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  277 (606)
                      +..+.++.+|.......+|+.+.+..+  +..++...+.++++|+.+.+..+ +.....        ..+.+ .+|+.+.
T Consensus       187 l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~--------~aF~~-~~L~~i~  254 (401)
T 4fdw_A          187 LSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQ--------EAFRE-SGITTVK  254 (401)
T ss_dssp             CTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT-CCEECT--------TTTTT-CCCSEEE
T ss_pred             cCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC-ccCccc--------ccccc-CCccEEE
Confidence            999999999887777899999999863  67777777899999999999875 222222        34445 6899999


Q ss_pred             EeeCCCCCCCccccc--cCCcEEEEEeCCCC----CCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhcccccee
Q 007371          278 IEVADAEILPPNFVS--VELQRYRIRIGDES----EDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLW  351 (606)
Q Consensus       278 l~~~~~~~~~~~~~~--~~L~~L~l~~~~~~----~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~  351 (606)
                      + .+.+..++.....  .+|+.+.+......    ..-....+..|++|+.+.+..+  ...+  +......+++|+.+.
T Consensus       255 l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I--~~~aF~~c~~L~~l~  329 (401)
T 4fdw_A          255 L-PNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRIL--GQGLLGGNRKVTQLT  329 (401)
T ss_dssp             E-ETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEE--CTTTTTTCCSCCEEE
T ss_pred             e-CCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEE--hhhhhcCCCCccEEE
Confidence            9 4667777665433  89999998433221    0123356788999999998852  1222  222333357899999


Q ss_pred             cccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          352 LETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       352 l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      +..+  ++.+...-  ..++ +|+.+.+.++.
T Consensus       330 lp~~--l~~I~~~a--F~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          330 IPAN--VTQINFSA--FNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             ECTT--CCEECTTS--SSSS-CCCEEEECCSS
T ss_pred             ECcc--ccEEcHHh--CCCC-CCCEEEEcCCC
Confidence            8653  55554321  3477 99999999874

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.73  E-value=1.2e-09  Score=110.26  Aligned_cols=87  Identities=17%  Similarity=0.085  Sum_probs=50.8

Q ss_pred             CCCCcEEEeeCCCCCC------CcccCCCCCCCEeeecCCcCC-----cccccccCCCCCCEEecCCCcccc----cccH
Q 007371          168 LINLQTLCLDYCRLKD------IAIVGQLKKLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLE----VIAP  232 (606)
Q Consensus       168 l~~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~----~~p~  232 (606)
                      ..+|++|++++|.++.      ...+..+++|++|++++|.+.     .++..+...++|++|++++|....    .++.
T Consensus       154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~  233 (372)
T 3un9_A          154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR  233 (372)
T ss_dssp             TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence            4456666666665543      123345566666666666655     234555666677777777765432    2233


Q ss_pred             HHhhCCCCCCEEEccCCCCCCcc
Q 007371          233 NVISKLSQLEELYMGNSFSGWEK  255 (606)
Q Consensus       233 ~~i~~l~~L~~L~l~~~~~~~~~  255 (606)
                      . +...++|++|++++|.+....
T Consensus       234 ~-L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          234 A-AREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             H-HHHCSSCCEEECTTSSCCHHH
T ss_pred             H-HHhCCCCCEEeccCCCCCHHH
Confidence            3 456677888888888765443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.73  E-value=2.7e-08  Score=99.81  Aligned_cols=90  Identities=23%  Similarity=0.178  Sum_probs=43.7

Q ss_pred             cccccchhHhcCCCCCcEEEeeC-CcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCcccc
Q 007371          133 GSMQVSDHFFKGTEGLKVLNFTR-IHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPL  208 (606)
Q Consensus       133 ~~~~~~~~~~~~l~~L~~L~l~~-~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~  208 (606)
                      .+..+|.  +..+.+|++|+|++ |.++.+| ..|+++.+|++|+|++|.++.  +..|.++.+|++|+|++|.++.+|.
T Consensus        20 ~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   97 (347)
T 2ifg_A           20 ALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (347)
T ss_dssp             CCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCH
Confidence            4444444  34455555555553 5555533 344555555555555555544  2344555555555555555555544


Q ss_pred             cccCCCCCCEEecCCC
Q 007371          209 EIGQLTRLQLLDLSNC  224 (606)
Q Consensus       209 ~i~~L~~L~~L~l~~~  224 (606)
                      .+....+|+.|++.+|
T Consensus        98 ~~~~~~~L~~l~l~~N  113 (347)
T 2ifg_A           98 KTVQGLSLQELVLSGN  113 (347)
T ss_dssp             TTTCSCCCCEEECCSS
T ss_pred             HHcccCCceEEEeeCC
Confidence            3333223555555444

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.66  E-value=6.1e-08  Score=97.14  Aligned_cols=102  Identities=17%  Similarity=0.147  Sum_probs=86.7

Q ss_pred             EEEecCC-CCcccCCcccccccceeeccc-ccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEeeCCC
Q 007371          104 AISLTYG-GIQVLPERLQCPCLELLHTEG-DGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCLDYCR  180 (606)
Q Consensus       104 ~L~l~~~-~~~~l~~~~~l~~L~~L~~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~  180 (606)
                      .++.+++ .+..+|....+++|+.|++++ |.+..++...|..+++|++|+|++|.++.+ |..|+++++|++|+|++|.
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            4677887 888999933889999999996 999999988889999999999999999995 5578999999999999999


Q ss_pred             CCC-CcccCCCCCCCEeeecCCcCCc
Q 007371          181 LKD-IAIVGQLKKLEILILARSTIKQ  205 (606)
Q Consensus       181 ~~~-~~~i~~l~~L~~L~l~~~~l~~  205 (606)
                      ++. |..+....+|++|++.+|.+..
T Consensus        92 l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           92 LESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cceeCHHHcccCCceEEEeeCCCccC
Confidence            998 5444333349999999998763

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.54  E-value=1.8e-06  Score=88.03  Aligned_cols=122  Identities=13%  Similarity=0.237  Sum_probs=52.0

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEe
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEIL  196 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L  196 (606)
                      +|.+|+.+.+..+ ...+....|.++.+|+.+++..+ ++.++ ..+.++.+|+.+.+..+ +..  ...+..+..+...
T Consensus        69 ~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~  145 (394)
T 4fs7_A           69 GCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEIT  145 (394)
T ss_dssp             TCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEE
T ss_pred             CCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccc
Confidence            4455555555432 44455555555666666655432 33322 23444555554433322 111  1222222222111


Q ss_pred             eecCCcCCcc-cccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371          197 ILARSTIKQL-PLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN  248 (606)
Q Consensus       197 ~l~~~~l~~l-p~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~  248 (606)
                      ...  .+..+ ...+.++.+|+.+.+.++  ...++...+..+.+|+.+.+..
T Consensus       146 ~~~--~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~c~~L~~i~l~~  194 (394)
T 4fs7_A          146 IPE--GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSGCGKLKSIKLPR  194 (394)
T ss_dssp             CCT--TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCBCCCCT
T ss_pred             cCc--cccccchhhhcccCCCcEEecCCc--cceeccccccCCCCceEEEcCC
Confidence            111  11111 123445566666665542  2334444455556666555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.50  E-value=7.2e-08  Score=84.54  Aligned_cols=94  Identities=11%  Similarity=0.135  Sum_probs=67.1

Q ss_pred             CCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCC-CCCCccceEeecccccccccc
Q 007371          449 NNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIG-PLFPKLFKLRLTDLPKLKRFC  527 (606)
Q Consensus       449 ~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~c~~L~~l~  527 (606)
                      .+|+.|++++|. +++. ....+.++++|++|++++|..+++........       . ...++|++|+|++|+++++-.
T Consensus        61 ~~L~~LDLs~~~-Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~-------~~~~~~~L~~L~Ls~C~~ITD~G  131 (176)
T 3e4g_A           61 YKIQAIDATDSC-IMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ-------LENLQKSMLEMEIISCGNVTDKG  131 (176)
T ss_dssp             CCEEEEEEESCC-CCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHT-------CHHHHHHCCEEEEESCTTCCHHH
T ss_pred             ceEeEEeCcCCC-ccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHh-------cccccCCCCEEEcCCCCcCCHHH
Confidence            468999999986 7776 33335788999999999998887643221110       0 013579999999999888754


Q ss_pred             ccccccccCCCcceEeeccCCCCccc
Q 007371          528 NFTRNIIELPKLRYLTIENCPDMETF  553 (606)
Q Consensus       528 ~~~~~~~~~~~L~~L~i~~Cp~L~~l  553 (606)
                      .  ..+..+++|+.|++++||+++..
T Consensus       132 l--~~L~~~~~L~~L~L~~c~~Itd~  155 (176)
T 3e4g_A          132 I--IALHHFRNLKYLFLSDLPGVKEK  155 (176)
T ss_dssp             H--HHGGGCTTCCEEEEESCTTCCCH
T ss_pred             H--HHHhcCCCCCEEECCCCCCCCch
Confidence            4  33556899999999999988763

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.42  E-value=3.1e-07  Score=91.70  Aligned_cols=178  Identities=16%  Similarity=0.126  Sum_probs=109.6

Q ss_pred             CCCeEEEecCCCCc--c-------cCCcc-cccccceeecccccc----------cccchhHhcCCCCCcEEEeeCCcCc
Q 007371          100 KDPIAISLTYGGIQ--V-------LPERL-QCPCLELLHTEGDGS----------MQVSDHFFKGTEGLKVLNFTRIHFS  159 (606)
Q Consensus       100 ~~l~~L~l~~~~~~--~-------l~~~~-~l~~L~~L~~~~~~~----------~~~~~~~~~~l~~L~~L~l~~~~l~  159 (606)
                      ..++.|.+....+.  .       +.+.. .+++|+.|.+.....          ..+ ..++..+++|+.|+++++.-.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNL  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTC
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCc
Confidence            45777877755432  1       11212 567888887654321          112 244577889999999887422


Q ss_pred             cCCccccCCCCCcEEEeeCCCCCC--CcccC--CCCCCCEeeecCC--c------CCcccccc--cCCCCCCEEecCCCc
Q 007371          160 SLPSSLGCLINLQTLCLDYCRLKD--IAIVG--QLKKLEILILARS--T------IKQLPLEI--GQLTRLQLLDLSNCW  225 (606)
Q Consensus       160 ~lp~~~~~l~~L~~L~l~~~~~~~--~~~i~--~l~~L~~L~l~~~--~------l~~lp~~i--~~L~~L~~L~l~~~~  225 (606)
                      .++. + .+.+|+.|++..|.+..  ...+.  .+++|++|+|+.+  .      +..+...+  ..+++|++|++.+|.
T Consensus       186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~  263 (362)
T 2ra8_A          186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE  263 (362)
T ss_dssp             BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred             eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence            3444 3 37889999998888765  34443  7889999988632  1      22222222  357889999998876


Q ss_pred             ccccccHHHh--hCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          226 LLEVIAPNVI--SKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       226 ~~~~~p~~~i--~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      .....+..+.  +.+++|++|+++.|.+.....    .+....+.++++|+.|+++.|.+.
T Consensus       264 i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~----~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGA----RLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH----HHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CchHHHHHHHhCccCCCCCEEECCCCCCChHHH----HHHHhhcccCCcceEEECCCCcCC
Confidence            5443333311  357789999998876654321    122234567788888888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.34  E-value=2.1e-05  Score=80.00  Aligned_cols=144  Identities=16%  Similarity=0.186  Sum_probs=96.0

Q ss_pred             CCCeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEEe
Q 007371          100 KDPIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLCL  176 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l  176 (606)
                      ..++.+.+.. .+..+....  +|++|+.+.+.++ ...++...|.++..|+.+.+..+ +..+ ...|.++..+.....
T Consensus        71 ~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~  147 (394)
T 4fs7_A           71 RKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP  147 (394)
T ss_dssp             TTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC
T ss_pred             CCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC
Confidence            5678888864 477776654  7899999998755 66778888899999988766544 3332 234555544443332


Q ss_pred             eCCCCCCCcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCC
Q 007371          177 DYCRLKDIAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS  249 (606)
Q Consensus       177 ~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~  249 (606)
                      ..........+.++.+|+.+.+..+ +..++. .+..+.+|+.+.+..+  ...++...+.++..|+.+.+..+
T Consensus       148 ~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          148 EGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             ccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhccccccceeecCCC
Confidence            2222112467888999999998764 444543 4667889999888763  45565555778888888776554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.32  E-value=3.5e-07  Score=80.17  Aligned_cols=89  Identities=15%  Similarity=0.141  Sum_probs=66.5

Q ss_pred             cceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhh----cCCCcEEEEecCCCcceeeccccccc
Q 007371          424 IHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRC----LNNLVYLEVRNCDSLEEVLHLEELIN  499 (606)
Q Consensus       424 ~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~----l~~L~~L~i~~c~~l~~l~~~~~~~~  499 (606)
                      ++|++++|. +.....   .....+++|++|++++|..+++- ....+..    .++|++|+|++|+++++-...     
T Consensus        64 ~~LDLs~~~-Itd~GL---~~L~~~~~L~~L~L~~C~~ItD~-gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-----  133 (176)
T 3e4g_A           64 QAIDATDSC-IMSIGF---DHMEGLQYVEKIRLCKCHYIEDG-CLERLSQLENLQKSMLEMEIISCGNVTDKGII-----  133 (176)
T ss_dssp             EEEEEESCC-CCGGGG---GGGTTCSCCCEEEEESCTTCCHH-HHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-----
T ss_pred             eEEeCcCCC-ccHHHH---HHhcCCCCCCEEEeCCCCccCHH-HHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-----
Confidence            339999997 544322   23467899999999999999986 2222333    357999999999999874432     


Q ss_pred             cccCCCCCCCCccceEeecccccccccc
Q 007371          500 ADKEHIGPLFPKLFKLRLTDLPKLKRFC  527 (606)
Q Consensus       500 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~  527 (606)
                           .+..+++|++|+|++|+++++..
T Consensus       134 -----~L~~~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          134 -----ALHHFRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             -----HGGGCTTCCEEEEESCTTCCCHH
T ss_pred             -----HHhcCCCCCEEECCCCCCCCchH
Confidence                 23468999999999999998753

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=98.09  E-value=5.4e-07  Score=95.96  Aligned_cols=80  Identities=16%  Similarity=0.161  Sum_probs=62.6

Q ss_pred             hhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCC-ccccccCCCCChHhHHHHhhhhhcC
Q 007371            5 GLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMS-CQKNFPIDALPRKEALQLFEKRMFN   83 (606)
Q Consensus         5 ~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~-~~~~~~l~~L~~~~~~~Lf~~~~~~   83 (606)
                      .+..+.||||+..++ .+.             ..+||+||||||+..| +..++ ...+|++++|+.++||+||.++++.
T Consensus       244 r~LlVLDdv~~~~~~-~~~-------------~~~gs~ilvTTR~~~v-~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~  308 (549)
T 2a5y_B          244 NTLFVFDDVVQEETI-RWA-------------QELRLRCLVTTRDVEI-SNAASQTCEFIEVTSLEIDECYDFLEAYGMP  308 (549)
T ss_dssp             TEEEEEEEECCHHHH-HHH-------------HHTTCEEEEEESBGGG-GGGCCSCEEEEECCCCCHHHHHHHHHHTSCC
T ss_pred             cEEEEEECCCCchhh-ccc-------------ccCCCEEEEEcCCHHH-HHHcCCCCeEEECCCCCHHHHHHHHHHHhcC
Confidence            566788999997655 221             2269999999999999 56665 4467999999999999999999987


Q ss_pred             CCChhhHHHHHhhhcc
Q 007371           84 IPNVADLEKKMEETIR   99 (606)
Q Consensus        84 ~~~~~~l~~~~~di~~   99 (606)
                      .+...+++.++.+|++
T Consensus       309 ~~~~~~~~~~~~~I~~  324 (549)
T 2a5y_B          309 MPVGEKEEDVLNKTIE  324 (549)
T ss_dssp             CC--CHHHHHHHHHHH
T ss_pred             CCCchhHHHHHHHHHH
Confidence            7654577778888876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.02  E-value=2.5e-06  Score=76.60  Aligned_cols=109  Identities=17%  Similarity=0.097  Sum_probs=62.5

Q ss_pred             hcCCCCCcEEEeeCC-cCcc-----CCccccCCCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcCC-----
Q 007371          142 FKGTEGLKVLNFTRI-HFSS-----LPSSLGCLINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTIK-----  204 (606)
Q Consensus       142 ~~~l~~L~~L~l~~~-~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~-----  204 (606)
                      +...+.|++|++++| .+..     +...+...++|++|++++|.+.+  .    ..+...++|++|++++|.+.     
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            456777777777777 6643     34445556677777777777654  1    33444566777777777665     


Q ss_pred             cccccccCCCCCCEEec--CCCccccc----ccHHHhhCCCCCCEEEccCCCC
Q 007371          205 QLPLEIGQLTRLQLLDL--SNCWLLEV----IAPNVISKLSQLEELYMGNSFS  251 (606)
Q Consensus       205 ~lp~~i~~L~~L~~L~l--~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~  251 (606)
                      .+...+...++|++|++  ++|.....    +... +...++|++|++++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~-L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANM-LEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHH-HHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHH-HHhCCCcCEEeccCCCC
Confidence            24445555666666666  44432221    2222 34445566666655543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.96  E-value=1.1e-05  Score=80.44  Aligned_cols=169  Identities=17%  Similarity=0.186  Sum_probs=111.0

Q ss_pred             CCCeEEEecCCCCc----------ccCCcc-cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-CCcccc-
Q 007371          100 KDPIAISLTYGGIQ----------VLPERL-QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLG-  166 (606)
Q Consensus       100 ~~l~~L~l~~~~~~----------~l~~~~-~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~-  166 (606)
                      ++++.|.+......          .+.... .+++|+.|.+.++....++.  +. .++|+.|++..+.+.. ....+. 
T Consensus       139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~~-~~~L~~L~L~~~~l~~~~l~~l~~  215 (362)
T 2ra8_A          139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--KP-RPNLKSLEIISGGLPDSVVEDILG  215 (362)
T ss_dssp             TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--CB-CTTCSEEEEECSBCCHHHHHHHHH
T ss_pred             chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--cc-CCCCcEEEEecCCCChHHHHHHHH
Confidence            78999998664331          122222 67899999998774334544  23 8899999999988764 223333 


Q ss_pred             -CCCCCcEEEeeCC--C-CCC-----C-ccc--CCCCCCCEeeecCCcCCc-ccccc---cCCCCCCEEecCCCccccc-
Q 007371          167 -CLINLQTLCLDYC--R-LKD-----I-AIV--GQLKKLEILILARSTIKQ-LPLEI---GQLTRLQLLDLSNCWLLEV-  229 (606)
Q Consensus       167 -~l~~L~~L~l~~~--~-~~~-----~-~~i--~~l~~L~~L~l~~~~l~~-lp~~i---~~L~~L~~L~l~~~~~~~~-  229 (606)
                       .+++|++|+|+.+  . ...     . ..+  ..+++|++|++.+|.+.. .+..+   ..+++|++|+++.|..... 
T Consensus       216 ~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G  295 (362)
T 2ra8_A          216 SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEG  295 (362)
T ss_dssp             SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHH
T ss_pred             ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHH
Confidence             7899999998642  1 111     1 122  358999999999997762 22222   3588999999998764432 


Q ss_pred             ---ccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhcc-CCCCCEEEEeeCC
Q 007371          230 ---IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELER-LTKLATLEIEVAD  282 (606)
Q Consensus       230 ---~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~  282 (606)
                         ++.. +..+++|+.|++++|.+.....        ..+.. +  ..+++++.++
T Consensus       296 ~~~L~~~-L~~l~~L~~L~L~~n~i~d~~~--------~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          296 ARLLLDH-VDKIKHLKFINMKYNYLSDEMK--------KELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHTT-HHHHTTCSEEECCSBBCCHHHH--------HHHHHHC--CSEEECCSBC
T ss_pred             HHHHHhh-cccCCcceEEECCCCcCCHHHH--------HHHHHHc--CCEEEecCCc
Confidence               3333 4678999999999997654332        34443 2  4567777665

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.93  E-value=0.00047  Score=69.93  Aligned_cols=119  Identities=8%  Similarity=0.140  Sum_probs=56.0

Q ss_pred             cceeecccccccccchhHhcCCCCCcEEEeeCCc---CccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEee
Q 007371          124 LELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIH---FSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILI  197 (606)
Q Consensus       124 L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~  197 (606)
                      |+++.+... ...+....|.++.+|+.+.+..+.   ++.+. ..|.++.+|+.+.+..+ +..  ...+..+.+|+.+.
T Consensus        66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~  143 (394)
T 4gt6_A           66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT  143 (394)
T ss_dssp             CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred             CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence            444444322 344555555666666666665442   33332 23455555555444332 222  24455566666666


Q ss_pred             ecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371          198 LARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGN  248 (606)
Q Consensus       198 l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~  248 (606)
                      +... +..++ ..+..+.+|+.+.+.++  ...+....+. ..+|+.+.+..
T Consensus       144 lp~~-~~~I~~~~F~~c~~L~~i~~~~~--~~~I~~~aF~-~~~l~~i~ip~  191 (394)
T 4gt6_A          144 IPEG-VTSVADGMFSYCYSLHTVTLPDS--VTAIEERAFT-GTALTQIHIPA  191 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEEECCTT--CCEECTTTTT-TCCCSEEEECT
T ss_pred             ccce-eeeecccceecccccccccccce--eeEecccccc-ccceeEEEECC
Confidence            6432 33332 23445666666666542  3333333232 24566665544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.87  E-value=0.0032  Score=63.72  Aligned_cols=112  Identities=11%  Similarity=0.143  Sum_probs=70.2

Q ss_pred             ccccchhHhcCCC-CCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCC---CCC--CcccCCCCCCCEeeecCCcCCcc
Q 007371          134 SMQVSDHFFKGTE-GLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCR---LKD--IAIVGQLKKLEILILARSTIKQL  206 (606)
Q Consensus       134 ~~~~~~~~~~~l~-~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~---~~~--~~~i~~l~~L~~L~l~~~~l~~l  206 (606)
                      ...+.+..|.+++ .|+.+.+..+ ++.+. ..|.++.+|+.+.+..+.   ++.  ...+..+.+|+.+.+..+ ++.+
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence            4456667777774 5888888653 55543 467788888888887653   333  356667777777666543 4444


Q ss_pred             cc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCC
Q 007371          207 PL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS  249 (606)
Q Consensus       207 p~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~  249 (606)
                      +. .+..+.+|+.+.+..  ....++...+..+.+|+.+.+..+
T Consensus       129 ~~~aF~~c~~L~~i~lp~--~~~~I~~~~F~~c~~L~~i~~~~~  170 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPE--GVTSVADGMFSYCYSLHTVTLPDS  170 (394)
T ss_dssp             CTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCTT
T ss_pred             hhhhhhhhcccccccccc--eeeeecccceecccccccccccce
Confidence            43 356677777777764  234445444667777777776543

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.85  E-value=5.8e-06  Score=74.23  Aligned_cols=119  Identities=12%  Similarity=0.067  Sum_probs=86.0

Q ss_pred             CCccccCCCCCcEEEeeCC-CCCC------CcccCCCCCCCEeeecCCcCC-----cccccccCCCCCCEEecCCCcccc
Q 007371          161 LPSSLGCLINLQTLCLDYC-RLKD------IAIVGQLKKLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLE  228 (606)
Q Consensus       161 lp~~~~~l~~L~~L~l~~~-~~~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~  228 (606)
                      +...+...++|++|++++| .+..      ...+...++|++|++++|.+.     .+...+...++|++|++++|....
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence            3445677889999999999 7775      255667789999999999887     345566677889999999876433


Q ss_pred             c----ccHHHhhCCCCCCEEEc--cCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          229 V----IAPNVISKLSQLEELYM--GNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       229 ~----~p~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      .    +... +...++|++|++  ++|.+.....    ......+...+.|++|++++|.+.
T Consensus       108 ~g~~~l~~~-L~~n~~L~~L~L~~~~N~i~~~g~----~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEA-LQSNTSLIELRIDNQSQPLGNNVE----MEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHG-GGGCSSCCEEECCCCSSCCCHHHH----HHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHH-HHhCCCceEEEecCCCCCCCHHHH----HHHHHHHHhCCCcCEEeccCCCCC
Confidence            2    3334 677788999999  7777654321    123456677788999999887753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.77  E-value=7.9e-06  Score=77.24  Aligned_cols=56  Identities=21%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             CCCCCCEeeecCCcCCcccccccCCC--CCCEEecCCCccccccc------HHHhhCCCCCCEEE
Q 007371          189 QLKKLEILILARSTIKQLPLEIGQLT--RLQLLDLSNCWLLEVIA------PNVISKLSQLEELY  245 (606)
Q Consensus       189 ~l~~L~~L~l~~~~l~~lp~~i~~L~--~L~~L~l~~~~~~~~~p------~~~i~~l~~L~~L~  245 (606)
                      .+++|++|+|++|.++.+ ..+..+.  +|++|++.+|...+.+|      ..++..+++|+.|+
T Consensus       194 ~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          194 KAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             HSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            444444444444444433 1122222  55555555555444333      12356677777775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.66  E-value=5.6e-05  Score=71.39  Aligned_cols=78  Identities=26%  Similarity=0.235  Sum_probs=40.6

Q ss_pred             cCCCCCcEEEeeCCcCccC---CccccCCCCCcEEEeeCCCCCCCcccCCCC--CCCEeeecCCcCC-ccc-------cc
Q 007371          143 KGTEGLKVLNFTRIHFSSL---PSSLGCLINLQTLCLDYCRLKDIAIVGQLK--KLEILILARSTIK-QLP-------LE  209 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~l---p~~~~~l~~L~~L~l~~~~~~~~~~i~~l~--~L~~L~l~~~~l~-~lp-------~~  209 (606)
                      .++++|+.|+|++|.++.+   |..+..+++|++|+|++|.+++...+..+.  +|++|++++|.+. .+|       ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3455666666666655542   234455666666666666655532333333  5666666666554 232       12


Q ss_pred             ccCCCCCCEEe
Q 007371          210 IGQLTRLQLLD  220 (606)
Q Consensus       210 i~~L~~L~~L~  220 (606)
                      +..+++|+.|+
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            44555666554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.20  E-value=0.042  Score=54.99  Aligned_cols=59  Identities=14%  Similarity=0.100  Sum_probs=35.3

Q ss_pred             ccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEee
Q 007371          445 VSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRL  517 (606)
Q Consensus       445 ~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l  517 (606)
                      +..+++|+.+.+.+ ..++.+ +...+.++++|+.+.+.+  +++.+..          .....+++|+++.+
T Consensus       282 F~~c~~L~~i~l~~-~~i~~I-~~~aF~~c~~L~~i~lp~--~l~~I~~----------~aF~~C~~L~~i~i  340 (379)
T 4h09_A          282 CSGCSNLTKVVMDN-SAIETL-EPRVFMDCVKLSSVTLPT--ALKTIQV----------YAFKNCKALSTISY  340 (379)
T ss_dssp             TTTCTTCCEEEECC-TTCCEE-CTTTTTTCTTCCEEECCT--TCCEECT----------TTTTTCTTCCCCCC
T ss_pred             cccccccccccccc-ccccee-hhhhhcCCCCCCEEEcCc--cccEEHH----------HHhhCCCCCCEEEE
Confidence            45567788888765 356666 334456778888877742  3555432          23445566666665

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=96.75  E-value=0.00013  Score=80.65  Aligned_cols=64  Identities=19%  Similarity=0.144  Sum_probs=49.7

Q ss_pred             hhhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccCC------CCChHhHHHHh
Q 007371            4 VGLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPID------ALPRKEALQLF   77 (606)
Q Consensus         4 ~~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l~------~L~~~~~~~Lf   77 (606)
                      ..+..+.||||+...|+.+.               .||+||||||+..+ +..+.....|+++      .|+.+|||+||
T Consensus       244 KRvLLVLDDVwd~eqLe~f~---------------pGSRILVTTRd~~V-a~~l~g~~vy~LeL~d~dL~LS~eEA~eLF  307 (1221)
T 1vt4_I          244 ENCLLVLLNVQNAKAWNAFN---------------LSCKILLTTRFKQV-TDFLSAATTTHISLDHHSMTLTPDEVKSLL  307 (1221)
T ss_dssp             SSCEEEEESCCCHHHHHHHH---------------SSCCEEEECSCSHH-HHHHHHHSSCEEEECSSSSCCCHHHHHHHH
T ss_pred             CCEEEEEeCcChHHHHHhhC---------------CCeEEEEeccChHH-HHhcCCCeEEEecCccccCCcCHHHHHHHH
Confidence            34566889999988887542               38999999999999 4444444467777      89999999999


Q ss_pred             hhhhcC
Q 007371           78 EKRMFN   83 (606)
Q Consensus        78 ~~~~~~   83 (606)
                      .+.++.
T Consensus       308 ~~~~g~  313 (1221)
T 1vt4_I          308 LKYLDC  313 (1221)
T ss_dssp             HHHHCC
T ss_pred             HHHcCC
Confidence            998543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=96.70  E-value=0.00038  Score=81.93  Aligned_cols=65  Identities=18%  Similarity=0.266  Sum_probs=52.9

Q ss_pred             hhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccCCC-CChHhHHHHhhhhhcC
Q 007371            5 GLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDA-LPRKEALQLFEKRMFN   83 (606)
Q Consensus         5 ~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l~~-L~~~~~~~Lf~~~~~~   83 (606)
                      .+..+.||||+..+|+.+               ++||+||||||+..|+...++....+++.. |+++++|+||...++.
T Consensus       237 ~~LlvlDd~~~~~~~~~~---------------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~  301 (1249)
T 3sfz_A          237 RSLLILDDVWDPWVLKAF---------------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM  301 (1249)
T ss_dssp             SCEEEEESCCCHHHHTTT---------------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTS
T ss_pred             CEEEEEecCCCHHHHHhh---------------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCC
Confidence            567788999998776654               348999999999999434567778899985 9999999999998764


Q ss_pred             C
Q 007371           84 I   84 (606)
Q Consensus        84 ~   84 (606)
                      .
T Consensus       302 ~  302 (1249)
T 3sfz_A          302 K  302 (1249)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=95.11  E-value=0.13  Score=51.39  Aligned_cols=126  Identities=14%  Similarity=0.173  Sum_probs=69.2

Q ss_pred             HhcCCCCCcEEEeeCCcCcc-CCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCC
Q 007371          141 FFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRL  216 (606)
Q Consensus       141 ~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L  216 (606)
                      .+.....|+.+.+..+ +.. -...+.++.+|+.+.+..+ ++.  ...+.++.+|+.+.+.. .++.++. .+..+.+|
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L  288 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNL  288 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTC
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccccccc
Confidence            3455666666666543 222 2234556666776666554 333  35556666677766644 3444443 34566777


Q ss_pred             CEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371          217 QLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       217 ~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      +.+.+.++ .+..++...+.++.+|+.+.+..+ +.....        ..+.++++|+++.+.
T Consensus       289 ~~i~l~~~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~--------~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          289 TKVVMDNS-AIETLEPRVFMDCVKLSSVTLPTA-LKTIQV--------YAFKNCKALSTISYP  341 (379)
T ss_dssp             CEEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT--------TTTTTCTTCCCCCCC
T ss_pred             cccccccc-ccceehhhhhcCCCCCCEEEcCcc-ccEEHH--------HHhhCCCCCCEEEEC
Confidence            77776653 244555554667777777776543 222221        455666667666553

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.31  E-value=0.03  Score=49.80  Aligned_cols=81  Identities=14%  Similarity=0.169  Sum_probs=43.4

Q ss_pred             cCCCCCcEEEeeCC-cCcc-----CCccccCCCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcCC-----c
Q 007371          143 KGTEGLKVLNFTRI-HFSS-----LPSSLGCLINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTIK-----Q  205 (606)
Q Consensus       143 ~~l~~L~~L~l~~~-~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~-----~  205 (606)
                      .+-+.|+.|+|+++ .+..     +-..+..-..|+.|+|++|.+.+  -    ..+..=+.|++|+|++|.|.     .
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44566677777664 5532     33344444566666666666654  1    23334455666666666655     2


Q ss_pred             ccccccCCCCCCEEecCC
Q 007371          206 LPLEIGQLTRLQLLDLSN  223 (606)
Q Consensus       206 lp~~i~~L~~L~~L~l~~  223 (606)
                      +-..+..-+.|++|++++
T Consensus       118 la~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHhhCCceeEEECCC
Confidence            233344444556665554

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=93.99  E-value=0.022  Score=60.90  Aligned_cols=62  Identities=15%  Similarity=0.219  Sum_probs=45.2

Q ss_pred             hhhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccC---CCCChHhHHHHhhhhh
Q 007371            5 GLAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPI---DALPRKEALQLFEKRM   81 (606)
Q Consensus         5 ~~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l---~~L~~~~~~~Lf~~~~   81 (606)
                      .+..+.||||+...++.               ...|++||||||+..++ ..+. ...+++   ++|+.+++++||...+
T Consensus       237 ~~LLVLDdv~~~~~l~~---------------l~~~~~ilvTsR~~~~~-~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~  299 (591)
T 1z6t_A          237 RSLLILDDVWDSWVLKA---------------FDSQCQILLTTRDKSVT-DSVM-GPKYVVPVESSLGKEKGLEILSLFV  299 (591)
T ss_dssp             TCEEEEEEECCHHHHHT---------------TCSSCEEEEEESCGGGG-TTCC-SCEEEEECCSSCCHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCHHHHHH---------------hcCCCeEEEECCCcHHH-HhcC-CCceEeecCCCCCHHHHHHHHHHHh
Confidence            35678899998655442               23489999999999984 4432 223333   5899999999999988


Q ss_pred             cC
Q 007371           82 FN   83 (606)
Q Consensus        82 ~~   83 (606)
                      +.
T Consensus       300 ~~  301 (591)
T 1z6t_A          300 NM  301 (591)
T ss_dssp             TS
T ss_pred             CC
Confidence            75

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.95  E-value=0.087  Score=43.45  Aligned_cols=31  Identities=19%  Similarity=0.169  Sum_probs=12.3

Q ss_pred             CcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371          171 LQTLCLDYCRLKD--IAIVGQLKKLEILILARS  201 (606)
Q Consensus       171 L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~  201 (606)
                      |++|+|++|.++.  +..+..+.+|++|+|.+|
T Consensus        33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           33 TTELVLTGNNLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             CCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence            3444444444333  123333444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.93  E-value=0.14  Score=42.22  Aligned_cols=53  Identities=23%  Similarity=0.248  Sum_probs=34.5

Q ss_pred             eeeccccccc--ccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCC
Q 007371          126 LLHTEGDGSM--QVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       126 ~L~~~~~~~~--~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~  181 (606)
                      .++.+++.+.  .+|..+   ..+|++|+|++|.|+.+|. .|..+.+|++|+|.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4445555555  666543   3457777777777777655 456677778888777754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=92.85  E-value=0.078  Score=47.08  Aligned_cols=113  Identities=18%  Similarity=0.183  Sum_probs=61.8

Q ss_pred             ccCCCCCcEEEeeCC-CCCC------CcccCCCCCCCEeeecCCcCC-----cccccccCCCCCCEEecCCCccccc---
Q 007371          165 LGCLINLQTLCLDYC-RLKD------IAIVGQLKKLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLEV---  229 (606)
Q Consensus       165 ~~~l~~L~~L~l~~~-~~~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~---  229 (606)
                      +.+-..|+.|+++++ .+.+      -..+..-..|+.|+|++|.+.     .+-..+..-+.|++|+++.|.....   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344566788888775 5654      144555567777777777765     3344455556677777777543221   


Q ss_pred             -ccHHHhhCCCCCCEEEccCCCC---CCccccCCCccchHhhccCCCCCEEEEeeCC
Q 007371          230 -IAPNVISKLSQLEELYMGNSFS---GWEKVEGGSNASLVELERLTKLATLEIEVAD  282 (606)
Q Consensus       230 -~p~~~i~~l~~L~~L~l~~~~~---~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  282 (606)
                       +... +..=+.|++|+++++..   ....    ..+....+..-+.|++|+++++.
T Consensus       117 ala~a-L~~N~tL~~L~L~n~~~~~ig~~g----~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          117 RLLRS-TLVTQSIVEFKADNQRQSVLGNQV----EMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHH-TTTTCCCSEEECCCCSSCCCCHHH----HHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHH-HhhCCceeEEECCCCcCcCcCHHH----HHHHHHHHHhCCCcCeEeccCCC
Confidence             2222 34445577777765422   1100    11233455555666666665443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	606
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 57.3 bits (137), Expect = 2e-09
 Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 16/197 (8%)

Query: 52  LLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIPNVADLEKKMEETIRKDPIAISLTYGG 111
           L+  +       P+  L   + L L   ++ +I  +A L    +         + L    
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTD---------LDLANNQ 252

Query: 112 IQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINL 171
           I  L        L  L    +    +S            LN  ++   S  S    L NL
Sbjct: 253 ISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS---NLKNL 309

Query: 172 QTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIA 231
             L L +  + DI+ V  L KL+ L  A + +  +   +  LT +  L   +  + ++  
Sbjct: 310 TYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP 368

Query: 232 PNVISKLSQLEELYMGN 248
              ++ L+++ +L + +
Sbjct: 369 ---LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 4/86 (4%)

Query: 168 LINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLL 227
           L       L    + D      L ++  L   R  IK +   +  L  L  ++ SN  L 
Sbjct: 21  LAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT 79

Query: 228 EVIAPNVISKLSQLEELYMGNSFSGW 253
           ++     +  L++L ++ M N+    
Sbjct: 80  DITP---LKNLTKLVDILMNNNQIAD 102

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 5e-06
 Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 5/99 (5%)

Query: 120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC 179
               L       + S             L+ LN +      LP+       L+ L   + 
Sbjct: 258 GLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLIASFN 314

Query: 180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQL 218
            L ++      + L+ L +  + +++ P     +  L++
Sbjct: 315 HLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.0 bits (102), Expect = 3e-05
 Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 7/75 (9%)

Query: 167 CLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWL 226
              +L+ L +   +L ++       +LE LI + + + ++P     L +   L +    L
Sbjct: 282 LPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAEVPELPQNLKQ---LHVEYNPL 336

Query: 227 LEVIAPNVISKLSQL 241
            E   P++   +  L
Sbjct: 337 REF--PDIPESVEDL 349

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-05
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 1/90 (1%)

Query: 158 FSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQ 217
              L   +    +     LD   L+    +       +L    S    L +    +  L 
Sbjct: 9   VEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEENIPELL 68

Query: 218 LLDLSNCWLLEVIA-PNVISKLSQLEELYM 246
            L+LSN  L  +    +++ K   L+ L +
Sbjct: 69  SLNLSNNRLYRLDDMSSIVQKAPNLKILNL 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 4e-05
 Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 169 INLQTLCLDYCRLKD---IAIVGQLKKLEILILARSTI-----KQLPLEIGQLTRLQLLD 220
           +++Q+L +    L D     ++  L++ +++ L    +     K +   +     L  L+
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 221 LSNCWL----LEVIAPNVISKLSQLEELYMGNSFSGW 253
           L +  L    +  +   + +   ++++L + N     
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 24/104 (23%), Positives = 43/104 (41%), Gaps = 8/104 (7%)

Query: 172 QTLCLDYCRLKDIAIVGQLKKLEILIL--ARSTIKQLPLEIGQLTRLQLLDLSNCWLLEV 229
           QTL L    L    + G+L    ++     RS + Q   E     R+Q +DLSN  +   
Sbjct: 3   QTLDLTGKNLHP-DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 230 IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKL 273
               ++S+ S+L+ L +        ++      +L +   L +L
Sbjct: 62  TLHGILSQCSKLQNLSLEGL-----RLSDPIVNTLAKNSNLVRL 100

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 23/101 (22%), Positives = 43/101 (42%), Gaps = 4/101 (3%)

Query: 148 LKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLP 207
           +  L+ +     +LP +L  L  L+ L      L+++  V  L +L+ L+L  + ++Q  
Sbjct: 22  VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 81

Query: 208 L--EIGQLTRLQLLDLSNCWL--LEVIAPNVISKLSQLEEL 244
               +    RL LL+L    L   E I   +   L  +  +
Sbjct: 82  AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 12/59 (20%), Positives = 20/59 (33%), Gaps = 1/59 (1%)

Query: 140 HFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILIL 198
                   L  L       S +   L  L NL  + L   ++ D++ +     L I+ L
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL 224

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	606
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.84
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.77
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.73
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.71
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.68
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.53
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.52
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.44
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.42
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.41
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.41
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.3
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.27
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.14
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.08
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.96
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.8
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.73
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.58
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	98.56
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.73
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.68
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.06
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.56
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.14

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=2e-19  Score=181.91  Aligned_cols=341  Identities=19%  Similarity=0.230  Sum_probs=181.5

Q ss_pred             CCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCC
Q 007371          144 GTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSN  223 (606)
Q Consensus       144 ~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~  223 (606)
                      .+.+|++|+++++.++++ +.++.+++|++|++++|++++++.++++++|++|++++|.+..+++ ++++++|+.|++.+
T Consensus        42 ~l~~l~~L~l~~~~I~~l-~gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~  119 (384)
T d2omza2          42 DLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFN  119 (384)
T ss_dssp             HHTTCCEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCS
T ss_pred             HhCCCCEEECCCCCCCCc-cccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc-cccccccccccccc
Confidence            355666677776666665 3466666777777777766664446666777777777776666543 66667777776666


Q ss_pred             CcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeC
Q 007371          224 CWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIG  303 (606)
Q Consensus       224 ~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  303 (606)
                      +... .++.  ......+.......+.+.....          .......+...... .................   ..
T Consensus       120 ~~~~-~~~~--~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~  182 (384)
T d2omza2         120 NQIT-DIDP--LKNLTNLNRLELSSNTISDISA----------LSGLTSLQQLSFGN-QVTDLKPLANLTTLERL---DI  182 (384)
T ss_dssp             SCCC-CCGG--GTTCTTCSEEEEEEEEECCCGG----------GTTCTTCSEEEEEE-SCCCCGGGTTCTTCCEE---EC
T ss_pred             cccc-cccc--cccccccccccccccccccccc----------cccccccccccccc-ccchhhhhccccccccc---cc
Confidence            4432 2222  3444455555544443322211          11111111111111 11000000000111111   11


Q ss_pred             CCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          304 DESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       304 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      .............+++++.+.+++|.+.+..+.     ...++|++|++.+|. ++.++. +   ..+++|+.|++++|.
T Consensus       183 ~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~-----~~~~~L~~L~l~~n~-l~~~~~-l---~~l~~L~~L~l~~n~  252 (384)
T d2omza2         183 SSNKVSDISVLAKLTNLESLIATNNQISDITPL-----GILTNLDELSLNGNQ-LKDIGT-L---ASLTNLTDLDLANNQ  252 (384)
T ss_dssp             CSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGG-----GGCTTCCEEECCSSC-CCCCGG-G---GGCTTCSEEECCSSC
T ss_pred             cccccccccccccccccceeeccCCccCCCCcc-----cccCCCCEEECCCCC-CCCcch-h---hcccccchhccccCc
Confidence            111112233445666777777777655332211     123677777777763 333332 2   367777888777774


Q ss_pred             CceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcc
Q 007371          384 EILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMS  463 (606)
Q Consensus       384 ~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~  463 (606)
                       ++.+.       +  ...+++|+.                 |.+.++. +..+     .+...++.++.+.+.++ .++
T Consensus       253 -l~~~~-------~--~~~~~~L~~-----------------L~l~~~~-l~~~-----~~~~~~~~l~~l~~~~n-~l~  298 (384)
T d2omza2         253 -ISNLA-------P--LSGLTKLTE-----------------LKLGANQ-ISNI-----SPLAGLTALTNLELNEN-QLE  298 (384)
T ss_dssp             -CCCCG-------G--GTTCTTCSE-----------------EECCSSC-CCCC-----GGGTTCTTCSEEECCSS-CCS
T ss_pred             -cCCCC-------c--ccccccCCE-----------------eeccCcc-cCCC-----Ccccccccccccccccc-ccc
Confidence             33221       1  344556666                 7776543 2222     22345667777777764 455


Q ss_pred             cccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccccccccccccCCCcceEe
Q 007371          464 SAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLT  543 (606)
Q Consensus       464 ~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~  543 (606)
                      .+.   ....++++++|+++++ ++++++.            +..+|+|++|++++| +++.++.    +..+++|++|+
T Consensus       299 ~~~---~~~~~~~l~~L~ls~n-~l~~l~~------------l~~l~~L~~L~L~~n-~l~~l~~----l~~l~~L~~L~  357 (384)
T d2omza2         299 DIS---PISNLKNLTYLTLYFN-NISDISP------------VSSLTKLQRLFFANN-KVSDVSS----LANLTNINWLS  357 (384)
T ss_dssp             CCG---GGGGCTTCSEEECCSS-CCSCCGG------------GGGCTTCCEEECCSS-CCCCCGG----GGGCTTCCEEE
T ss_pred             ccc---ccchhcccCeEECCCC-CCCCCcc------------cccCCCCCEEECCCC-CCCCChh----HcCCCCCCEEE
Confidence            542   2466778888888775 3555432            235778888888877 6666643    55678888888


Q ss_pred             eccCCCCcccccCCccccccccChhhhhhhccccceeecc
Q 007371          544 IENCPDMETFISNSTSVLHMTADNKEAQKLKSEKNLLVAD  583 (606)
Q Consensus       544 i~~Cp~L~~l~~~~~~~~~l~~~~~~~~~l~~l~~l~i~~  583 (606)
                      +++| +++.++              .+..+++|+.|.+++
T Consensus       358 l~~N-~l~~l~--------------~l~~l~~L~~L~L~~  382 (384)
T d2omza2         358 AGHN-QISDLT--------------PLANLTRITQLGLND  382 (384)
T ss_dssp             CCSS-CCCBCG--------------GGTTCTTCSEEECCC
T ss_pred             CCCC-cCCCCh--------------hhccCCCCCEeeCCC
Confidence            8776 566654              234566777776654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.84  E-value=9.8e-19  Score=176.75  Aligned_cols=339  Identities=20%  Similarity=0.210  Sum_probs=172.2

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      ..+++|+++++.+..++....+++|++|++++|.+..++.  ++++++|++|++++|.+..++. ++.+++|++|++.++
T Consensus        44 ~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~  120 (384)
T d2omza2          44 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  120 (384)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSS
T ss_pred             CCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc--ccCCcccccccccccccccccc-ccccccccccccccc
Confidence            6677777777777766544467777777777777666664  4667777777777777666543 666777777777766


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .+++.........+..+....+.+..+.... .....+......  ...... . +...+.........+.....     
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~--~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-----  190 (384)
T d2omza2         121 QITDIDPLKNLTNLNRLELSSNTISDISALS-GLTSLQQLSFGN--QVTDLK-P-LANLTTLERLDISSNKVSDI-----  190 (384)
T ss_dssp             CCCCCGGGTTCTTCSEEEEEEEEECCCGGGT-TCTTCSEEEEEE--SCCCCG-G-GTTCTTCCEEECCSSCCCCC-----
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccc--ccchhh-h-hccccccccccccccccccc-----
Confidence            6666433444555555555555443322111 111111111100  001111 1 33334444444333322211     


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchh
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDG  339 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~  339 (606)
                           .....+++++.+.+..+.+..++.....++|+.|                         ++++|.+.. ++   .
T Consensus       191 -----~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L-------------------------~l~~n~l~~-~~---~  236 (384)
T d2omza2         191 -----SVLAKLTNLESLIATNNQISDITPLGILTNLDEL-------------------------SLNGNQLKD-IG---T  236 (384)
T ss_dssp             -----GGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEE-------------------------ECCSSCCCC-CG---G
T ss_pred             -----cccccccccceeeccCCccCCCCcccccCCCCEE-------------------------ECCCCCCCC-cc---h
Confidence                 3445566666666666655544433222334443                         333332211 10   1


Q ss_pred             HHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhc
Q 007371          340 TKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIG  419 (606)
Q Consensus       340 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~  419 (606)
                      +. .+++|+.|++.+|. +..++.    .+.+++|++|+++++. +..+.       +  ...++.++.           
T Consensus       237 l~-~l~~L~~L~l~~n~-l~~~~~----~~~~~~L~~L~l~~~~-l~~~~-------~--~~~~~~l~~-----------  289 (384)
T d2omza2         237 LA-SLTNLTDLDLANNQ-ISNLAP----LSGLTKLTELKLGANQ-ISNIS-------P--LAGLTALTN-----------  289 (384)
T ss_dssp             GG-GCTTCSEEECCSSC-CCCCGG----GTTCTTCSEEECCSSC-CCCCG-------G--GTTCTTCSE-----------
T ss_pred             hh-cccccchhccccCc-cCCCCc----ccccccCCEeeccCcc-cCCCC-------c--ccccccccc-----------
Confidence            11 23555555555543 222222    2255666666665553 21110       0  122333333           


Q ss_pred             cccccceeccccccccccccCCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccc
Q 007371          420 FRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELIN  499 (606)
Q Consensus       420 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~  499 (606)
                            +.+.++. +..+     .....+++++.|+++++ +++++.+   +..+++|++|++++| .++.++.      
T Consensus       290 ------l~~~~n~-l~~~-----~~~~~~~~l~~L~ls~n-~l~~l~~---l~~l~~L~~L~L~~n-~l~~l~~------  346 (384)
T d2omza2         290 ------LELNENQ-LEDI-----SPISNLKNLTYLTLYFN-NISDISP---VSSLTKLQRLFFANN-KVSDVSS------  346 (384)
T ss_dssp             ------EECCSSC-CSCC-----GGGGGCTTCSEEECCSS-CCSCCGG---GGGCTTCCEEECCSS-CCCCCGG------
T ss_pred             ------ccccccc-cccc-----cccchhcccCeEECCCC-CCCCCcc---cccCCCCCEEECCCC-CCCCChh------
Confidence                  4444332 1111     12345567777777764 5666633   456777777777776 3555432      


Q ss_pred             cccCCCCCCCCccceEeeccccccccccccccccccCCCcceEeecc
Q 007371          500 ADKEHIGPLFPKLFKLRLTDLPKLKRFCNFTRNIIELPKLRYLTIEN  546 (606)
Q Consensus       500 ~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~~~~~~~~~L~~L~i~~  546 (606)
                            +..+++|++|++++| +++++++    ...+++|+.|+|++
T Consensus       347 ------l~~l~~L~~L~l~~N-~l~~l~~----l~~l~~L~~L~L~~  382 (384)
T d2omza2         347 ------LANLTNINWLSAGHN-QISDLTP----LANLTRITQLGLND  382 (384)
T ss_dssp             ------GGGCTTCCEEECCSS-CCCBCGG----GTTCTTCSEEECCC
T ss_pred             ------HcCCCCCCEEECCCC-cCCCChh----hccCCCCCEeeCCC
Confidence                  235677777777665 5666644    45567777776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=1.4e-17  Score=162.35  Aligned_cols=244  Identities=16%  Similarity=0.178  Sum_probs=184.3

Q ss_pred             ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeec
Q 007371          123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILA  199 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~  199 (606)
                      ..++++.++.....+|..+   .+.+++|++++|.++.+|+ .|.++++|++|++++|.+..  |..+.++++|++|+++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l---~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~   87 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDL---PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS   87 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSC---CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             cCCEEEecCCCCCccCCCC---CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence            5677777787888898866   4689999999999999876 68999999999999999888  5779999999999999


Q ss_pred             CCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371          200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       200 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      +|+++.+|..+  ...++.|.+.++. ...++...+.....++.+....+.......      ....+..+++|+.+++.
T Consensus        88 ~n~l~~l~~~~--~~~l~~L~~~~n~-l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~------~~~~~~~l~~L~~l~l~  158 (305)
T d1xkua_          88 KNQLKELPEKM--PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGI------ENGAFQGMKKLSYIRIA  158 (305)
T ss_dssp             SSCCSBCCSSC--CTTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGB------CTTGGGGCTTCCEEECC
T ss_pred             CCccCcCccch--hhhhhhhhccccc-hhhhhhhhhhccccccccccccccccccCC------CccccccccccCccccc
Confidence            99999998754  4588999998865 445665557788888999887765433221      22567888999999999


Q ss_pred             eCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcc
Q 007371          280 VADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQ  359 (606)
Q Consensus       280 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~  359 (606)
                      .+.+..+|... .++|+.|++. ++......+..+..++.++.|++++|.+.+..+  .++. .+++|++|+|++| .++
T Consensus       159 ~n~l~~l~~~~-~~~L~~L~l~-~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~--~~~~-~l~~L~~L~L~~N-~L~  232 (305)
T d1xkua_         159 DTNITTIPQGL-PPSLTELHLD-GNKITKVDAASLKGLNNLAKLGLSFNSISAVDN--GSLA-NTPHLRELHLNNN-KLV  232 (305)
T ss_dssp             SSCCCSCCSSC-CTTCSEEECT-TSCCCEECTGGGTTCTTCCEEECCSSCCCEECT--TTGG-GSTTCCEEECCSS-CCS
T ss_pred             cCCccccCccc-CCccCEEECC-CCcCCCCChhHhhcccccccccccccccccccc--cccc-ccccceeeecccc-ccc
Confidence            99988887664 4788888873 333333344567778888888888876643321  2232 3578888888887 456


Q ss_pred             cccccccCCCCCCCCcEEEeecCCCceEe
Q 007371          360 SVVHELDDGEGFPRLKHLHVKSCSEILHI  388 (606)
Q Consensus       360 ~~~~~l~~~~~l~~L~~L~l~~c~~l~~~  388 (606)
                      .+|.++.   .+++|++|++++++ ++.+
T Consensus       233 ~lp~~l~---~l~~L~~L~Ls~N~-i~~i  257 (305)
T d1xkua_         233 KVPGGLA---DHKYIQVVYLHNNN-ISAI  257 (305)
T ss_dssp             SCCTTTT---TCSSCCEEECCSSC-CCCC
T ss_pred             ccccccc---cccCCCEEECCCCc-cCcc
Confidence            6776665   78888888888874 6654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=4.2e-19  Score=174.12  Aligned_cols=224  Identities=14%  Similarity=0.093  Sum_probs=107.1

Q ss_pred             cCCCCCcEEEeeC-CcCcc-CCccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCCCCC
Q 007371          143 KGTEGLKVLNFTR-IHFSS-LPSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLTRLQ  217 (606)
Q Consensus       143 ~~l~~L~~L~l~~-~~l~~-lp~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L~  217 (606)
                      .++++|++|++++ |++.. +|..|+++++|++|++++|.+..  +..+..+.+|+++++++|.+. .+|..++++++|+
T Consensus        73 ~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~  152 (313)
T d1ogqa_          73 ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV  152 (313)
T ss_dssp             GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred             hcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccc
Confidence            3444444444443 33432 44444444445555544444444  233444444455544444322 3444444445555


Q ss_pred             EEecCCCcccccccHHHhhCCCCC-CEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC-CCCccccc-cC
Q 007371          218 LLDLSNCWLLEVIAPNVISKLSQL-EELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE-ILPPNFVS-VE  294 (606)
Q Consensus       218 ~L~l~~~~~~~~~p~~~i~~l~~L-~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~~-~~  294 (606)
                      ++++++|...+.+|.. ++.+.++ +.+.++.|.+....+        ..++.+..+ .+++..+... .+|..+.. ++
T Consensus       153 ~l~l~~n~l~~~ip~~-~~~l~~l~~~l~~~~n~l~~~~~--------~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~  222 (313)
T d1ogqa_         153 GITFDGNRISGAIPDS-YGSFSKLFTSMTISRNRLTGKIP--------PTFANLNLA-FVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             EEECCSSCCEEECCGG-GGCCCTTCCEEECCSSEEEEECC--------GGGGGCCCS-EEECCSSEEEECCGGGCCTTSC
T ss_pred             eeeccccccccccccc-ccccccccccccccccccccccc--------ccccccccc-cccccccccccccccccccccc
Confidence            5555444444444444 3444433 444444444333322        233333222 3333333221 22222211 34


Q ss_pred             CcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCC
Q 007371          295 LQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRL  374 (606)
Q Consensus       295 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L  374 (606)
                      ++.+.+.... . ...++.+..+++++.|++++|.+.+.+  |.+++. +++|++|++++|.....+|.    .+.+++|
T Consensus       223 l~~l~~~~~~-l-~~~~~~~~~~~~L~~L~Ls~N~l~g~i--P~~l~~-L~~L~~L~Ls~N~l~g~iP~----~~~L~~L  293 (313)
T d1ogqa_         223 TQKIHLAKNS-L-AFDLGKVGLSKNLNGLDLRNNRIYGTL--PQGLTQ-LKFLHSLNVSFNNLCGEIPQ----GGNLQRF  293 (313)
T ss_dssp             CSEEECCSSE-E-CCBGGGCCCCTTCCEEECCSSCCEECC--CGGGGG-CTTCCEEECCSSEEEEECCC----STTGGGS
T ss_pred             cccccccccc-c-cccccccccccccccccCccCeecccC--ChHHhC-CCCCCEEECcCCcccccCCC----cccCCCC
Confidence            4444431111 1 111234556677777777777775544  334544 47788888887766556664    3367788


Q ss_pred             cEEEeecCCCc
Q 007371          375 KHLHVKSCSEI  385 (606)
Q Consensus       375 ~~L~l~~c~~l  385 (606)
                      +.+.+.+++.+
T Consensus       294 ~~l~l~~N~~l  304 (313)
T d1ogqa_         294 DVSAYANNKCL  304 (313)
T ss_dssp             CGGGTCSSSEE
T ss_pred             CHHHhCCCccc
Confidence            88877777643

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.77  E-value=1.9e-18  Score=169.43  Aligned_cols=245  Identities=15%  Similarity=0.129  Sum_probs=199.2

Q ss_pred             CCCeEEEecCCCCc---ccCCcc-cccccceeeccc-cc-ccccchhHhcCCCCCcEEEeeCCcCcc-CCccccCCCCCc
Q 007371          100 KDPIAISLTYGGIQ---VLPERL-QCPCLELLHTEG-DG-SMQVSDHFFKGTEGLKVLNFTRIHFSS-LPSSLGCLINLQ  172 (606)
Q Consensus       100 ~~l~~L~l~~~~~~---~l~~~~-~l~~L~~L~~~~-~~-~~~~~~~~~~~l~~L~~L~l~~~~l~~-lp~~~~~l~~L~  172 (606)
                      .+++.|+++++.+.   .+|..+ ++++|++|++++ |. .+.+|..+ .++++|++|++++|.+.. .|..+..+.+|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhc
Confidence            46899999999884   577777 999999999875 44 55899886 889999999999999988 666789999999


Q ss_pred             EEEeeCCCCCC--CcccCCCCCCCEeeecCCcCC-cccccccCCCCC-CEEecCCCcccccccHHHhhCCCCCCEEEccC
Q 007371          173 TLCLDYCRLKD--IAIVGQLKKLEILILARSTIK-QLPLEIGQLTRL-QLLDLSNCWLLEVIAPNVISKLSQLEELYMGN  248 (606)
Q Consensus       173 ~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~~l~-~lp~~i~~L~~L-~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~  248 (606)
                      ++++++|.+..  |..++++++|+++++++|.+. .+|..+..+.++ +.+.+++|...+..|.. ++.+..+ .+++.+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~~-~l~l~~  206 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNLA-FVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCCCS-EEECCS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccc-ccccccc-cccccc
Confidence            99999998666  789999999999999999887 789999988886 78999998877777776 7776544 788888


Q ss_pred             CCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCcccc-ccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecC
Q 007371          249 SFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFV-SVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKG  327 (606)
Q Consensus       249 ~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~  327 (606)
                      +......+        ..++.+++|+.+++..+.+...+..+. .++|+.|++ ..+.....+|..++.+++|+.|+|++
T Consensus       207 ~~~~~~~~--------~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~L-s~N~l~g~iP~~l~~L~~L~~L~Ls~  277 (313)
T d1ogqa_         207 NMLEGDAS--------VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL-RNNRIYGTLPQGLTQLKFLHSLNVSF  277 (313)
T ss_dssp             SEEEECCG--------GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEEC-CSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred             cccccccc--------ccccccccccccccccccccccccccccccccccccC-ccCeecccCChHHhCCCCCCEEECcC
Confidence            77665554        677889999999999888765444443 389999998 34555556788899999999999999


Q ss_pred             cccccccccchhHHHhhccccceecccccCccc
Q 007371          328 LEKVSILQENDGTKMLLQRTEGLWLETLEGVQS  360 (606)
Q Consensus       328 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~  360 (606)
                      |.+.+.++.   . ..+++|+.+++.+|..+..
T Consensus       278 N~l~g~iP~---~-~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         278 NNLCGEIPQ---G-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             SEEEEECCC---S-TTGGGSCGGGTCSSSEEES
T ss_pred             CcccccCCC---c-ccCCCCCHHHhCCCccccC
Confidence            998776643   1 2358899999998875443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=5.5e-16  Score=154.13  Aligned_cols=99  Identities=21%  Similarity=0.290  Sum_probs=49.8

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      ..+++|+++++.+..+|+.  .++|++|++++|.+..+|..    +.+|+.|++++|.++.++...   ..|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~~--~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~l~~n~l~~l~~lp---~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPEL--PPHLESLVASCNSLTELPEL----PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSC--CTTCSEEECCSSCCSSCCCC----CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCCC--CCCCCEEECCCCCCcccccc----hhhhhhhhhhhcccchhhhhc---ccccccccccc
Confidence            4567777777777666642  34555555555555555431    344555555555554433211   23455555555


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCccc
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLP  207 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp  207 (606)
                      .+...+.++.+++|++|+++++.+...|
T Consensus       109 ~l~~lp~~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         109 QLEKLPELQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CCSSCCCCTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccccchhhhccceeeccccccccccc
Confidence            4444223344455555555444444333

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=6.6e-17  Score=154.02  Aligned_cols=196  Identities=22%  Similarity=0.227  Sum_probs=154.7

Q ss_pred             CeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCC
Q 007371          102 PIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRL  181 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~  181 (606)
                      ...++.+++++..+|..+. +++++|++++|.+..++...|.++++|++|++++|.++.+|. ++.+++|++|++++|++
T Consensus        12 ~~~v~C~~~~L~~iP~~lp-~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~l   89 (266)
T d1p9ag_          12 HLEVNCDKRNLTALPPDLP-KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQL   89 (266)
T ss_dssp             CCEEECTTSCCSSCCSCCC-TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCC
T ss_pred             CeEEEccCCCCCeeCcCcC-cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccccccccc
Confidence            3456777788888876542 578899999998888888778889999999999999888764 57888999999999988


Q ss_pred             CC-CcccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          182 KD-IAIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       182 ~~-~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .. +..+..+++|++|+++++.+..++ ..+..+.++++|++.+|. ...+|...+..+++|+.+++++|.+...++   
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~-l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~---  165 (266)
T d1p9ag_          90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-LKTLPPGLLTPTPKLEKLSLANNNLTELPA---  165 (266)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCSCCCT---
T ss_pred             cccccccccccccccccccccccceeeccccccccccccccccccc-cceeccccccccccchhcccccccccccCc---
Confidence            87 778888999999999998887664 455678899999998865 456666657788899999999998877765   


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccc
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVS  332 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~  332 (606)
                           ..++.+++|++|++++|.+..+|..+                        ..+++|+.|+|++|....
T Consensus       166 -----~~~~~l~~L~~L~Ls~N~L~~lp~~~------------------------~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         166 -----GLLNGLENLDTLLLQENSLYTIPKGF------------------------FGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             -----TTTTTCTTCCEEECCSSCCCCCCTTT------------------------TTTCCCSEEECCSCCBCC
T ss_pred             -----cccccccccceeecccCCCcccChhH------------------------CCCCCCCEEEecCCCCCC
Confidence                 66788889999999998888887653                        334556667777766543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-17  Score=156.89  Aligned_cols=195  Identities=19%  Similarity=0.229  Sum_probs=135.2

Q ss_pred             ccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCC-ccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCC
Q 007371          123 CLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLP-SSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARS  201 (606)
Q Consensus       123 ~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp-~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~  201 (606)
                      .+..++.+++.+..+|.++   .+++++|+|++|.++.+| ..|.++++|++|++++|.++.++.++.+++|++|++++|
T Consensus        11 ~~~~v~C~~~~L~~iP~~l---p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL---PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC---CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS
T ss_pred             CCeEEEccCCCCCeeCcCc---CcCCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            4445566667777777654   356788888888888765 457788888888888888777555677888888888888


Q ss_pred             cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371          202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA  281 (606)
Q Consensus       202 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  281 (606)
                      +++..|..+..+++|+.|+++++...+ ++...+..+.++++|++++|.+...++        ..+..+++|+.+++++|
T Consensus        88 ~l~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~L~l~~n~l~~l~~--------~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          88 QLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTLPP--------GLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSCCCC-CCSSTTTTCTTCCEEECTTSCCCCCCT--------TTTTTCTTCCEEECTTS
T ss_pred             cccccccccccccccccccccccccce-eeccccccccccccccccccccceecc--------ccccccccchhcccccc
Confidence            888777777888888888888765443 333336777788888888777766554        45566777777777777


Q ss_pred             CCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371          282 DAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV  361 (606)
Q Consensus       282 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  361 (606)
                      ++..++...                       +..                           +++|++|+|++|. ++.+
T Consensus       159 ~l~~~~~~~-----------------------~~~---------------------------l~~L~~L~Ls~N~-L~~l  187 (266)
T d1p9ag_         159 NLTELPAGL-----------------------LNG---------------------------LENLDTLLLQENS-LYTI  187 (266)
T ss_dssp             CCSCCCTTT-----------------------TTT---------------------------CTTCCEEECCSSC-CCCC
T ss_pred             cccccCccc-----------------------ccc---------------------------ccccceeecccCC-Cccc
Confidence            666554321                       122                           3566666666654 4466


Q ss_pred             cccccCCCCCCCCcEEEeecCC
Q 007371          362 VHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       362 ~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                      |..+.   .+++|+.|++++++
T Consensus       188 p~~~~---~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         188 PKGFF---GSHLLPFAFLHGNP  206 (266)
T ss_dssp             CTTTT---TTCCCSEEECCSCC
T ss_pred             ChhHC---CCCCCCEEEecCCC
Confidence            66554   67888888888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.71  E-value=6.3e-16  Score=150.51  Aligned_cols=270  Identities=16%  Similarity=0.164  Sum_probs=162.8

Q ss_pred             CCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-C-cccCCCCCCCEeeecCCcCCcc-cccccCCCCCCEEecCC
Q 007371          147 GLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-I-AIVGQLKKLEILILARSTIKQL-PLEIGQLTRLQLLDLSN  223 (606)
Q Consensus       147 ~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~l-p~~i~~L~~L~~L~l~~  223 (606)
                      ..+.++.++.+++.+|..+.  +++++|++++|+++. + ..+.++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~   88 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK   88 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccC
Confidence            46778888888888888764  578999999998888 4 4688889999999999888877 45688888999999888


Q ss_pred             CcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeC
Q 007371          224 CWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIG  303 (606)
Q Consensus       224 ~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  303 (606)
                      |. ...+|.   .....++.|...++.+.....        ..+.....++.+....+.......               
T Consensus        89 n~-l~~l~~---~~~~~l~~L~~~~n~l~~l~~--------~~~~~~~~~~~l~~~~n~~~~~~~---------------  141 (305)
T d1xkua_          89 NQ-LKELPE---KMPKTLQELRVHENEITKVRK--------SVFNGLNQMIVVELGTNPLKSSGI---------------  141 (305)
T ss_dssp             SC-CSBCCS---SCCTTCCEEECCSSCCCBBCH--------HHHTTCTTCCEEECCSSCCCGGGB---------------
T ss_pred             Cc-cCcCcc---chhhhhhhhhccccchhhhhh--------hhhhccccccccccccccccccCC---------------
Confidence            65 556664   344577888887777665543        445555566666655443321110               


Q ss_pred             CCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeecCC
Q 007371          304 DESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCS  383 (606)
Q Consensus       304 ~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~  383 (606)
                            ....+..++.|+.+++.+|.+.. +  +..   .+++|+.|++.++......+..+.   +++.+++|.++++.
T Consensus       142 ------~~~~~~~l~~L~~l~l~~n~l~~-l--~~~---~~~~L~~L~l~~n~~~~~~~~~~~---~~~~l~~L~~s~n~  206 (305)
T d1xkua_         142 ------ENGAFQGMKKLSYIRIADTNITT-I--PQG---LPPSLTELHLDGNKITKVDAASLK---GLNNLAKLGLSFNS  206 (305)
T ss_dssp             ------CTTGGGGCTTCCEEECCSSCCCS-C--CSS---CCTTCSEEECTTSCCCEECTGGGT---TCTTCCEEECCSSC
T ss_pred             ------CccccccccccCccccccCCccc-c--Ccc---cCCccCEEECCCCcCCCCChhHhh---cccccccccccccc
Confidence                  01123334445555555543321 1  111   134555555555544444443333   55555555555542


Q ss_pred             CceEeccccccccccccccccccchhhhhhhhhhhccccccceeccccccccccccCCCCCccccCCccEEEeccCCCcc
Q 007371          384 EILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSHFPRLKEIWHGQALPVSFFNNLFDLVVDDCTNMS  463 (606)
Q Consensus       384 ~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~l~~L~~L~i~~C~~L~  463 (606)
                       ++.                                                 ++..   .+..+++|++|++++| +++
T Consensus       207 -l~~-------------------------------------------------~~~~---~~~~l~~L~~L~L~~N-~L~  232 (305)
T d1xkua_         207 -ISA-------------------------------------------------VDNG---SLANTPHLRELHLNNN-KLV  232 (305)
T ss_dssp             -CCE-------------------------------------------------ECTT---TGGGSTTCCEEECCSS-CCS
T ss_pred             -ccc-------------------------------------------------cccc---cccccccceeeecccc-ccc
Confidence             222                                                 2111   1244567777777775 677


Q ss_pred             cccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecccc
Q 007371          464 SAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLP  521 (606)
Q Consensus       464 ~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~  521 (606)
                      .+ |.. +.++++|++|+++++ +++.+....-..    .......++|+.|+|+++|
T Consensus       233 ~l-p~~-l~~l~~L~~L~Ls~N-~i~~i~~~~f~~----~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         233 KV-PGG-LADHKYIQVVYLHNN-NISAIGSNDFCP----PGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             SC-CTT-TTTCSSCCEEECCSS-CCCCCCTTSSSC----SSCCTTSCCCSEEECCSSS
T ss_pred             cc-ccc-cccccCCCEEECCCC-ccCccChhhccC----cchhcccCCCCEEECCCCc
Confidence            66 433 456778888888775 466654311100    1223456778888888876

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.6e-16  Score=149.11  Aligned_cols=201  Identities=22%  Similarity=0.274  Sum_probs=94.8

Q ss_pred             CeEEEecCCCCcccCCcc--cccccceeecccccccccchhHhcCCCCCcEEEeeCC-cCccC-CccccCCCCCcEEEee
Q 007371          102 PIAISLTYGGIQVLPERL--QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRI-HFSSL-PSSLGCLINLQTLCLD  177 (606)
Q Consensus       102 l~~L~l~~~~~~~l~~~~--~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~l-p~~~~~l~~L~~L~l~  177 (606)
                      ++.|++++|.+..++...  .+++|++|+++++.+..++...+..+..++.+....+ .++.+ |..++++++|++|+++
T Consensus        34 ~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~  113 (284)
T d1ozna_          34 SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD  113 (284)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT
T ss_pred             CCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecC
Confidence            444555555444444321  4444455554444444444444444444444443322 33332 3334444555555555


Q ss_pred             CCCCCC--CcccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371          178 YCRLKD--IAIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE  254 (606)
Q Consensus       178 ~~~~~~--~~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~  254 (606)
                      +|.+..  +..+..+.+|+.+++++|.++.+|. .+..+++|++|++++|. +..++...+.++++|+++++++|.+...
T Consensus       114 ~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~-l~~l~~~~f~~l~~L~~l~l~~N~l~~i  192 (284)
T d1ozna_         114 RCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHV  192 (284)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCc-ccccchhhhccccccchhhhhhcccccc
Confidence            544433  2334444445555555554444432 23344445555554443 2233322244445555555554444433


Q ss_pred             cccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCccccccc
Q 007371          255 KVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSIL  334 (606)
Q Consensus       255 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~  334 (606)
                      .+        ..++.+++|++|+++.|.+..++.                       ..+..+++|+.+++++|.+.+.-
T Consensus       193 ~~--------~~f~~l~~L~~L~l~~N~i~~~~~-----------------------~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         193 HP--------HAFRDLGRLMTLYLFANNLSALPT-----------------------EALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             CT--------TTTTTCTTCCEEECCSSCCSCCCH-----------------------HHHTTCTTCCEEECCSSCEECSG
T ss_pred             Ch--------hHhhhhhhcccccccccccccccc-----------------------cccccccccCEEEecCCCCCCCc
Confidence            32        344444445555554444443332                       33566778888888888775543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.67  E-value=9.5e-15  Score=145.01  Aligned_cols=310  Identities=21%  Similarity=0.171  Sum_probs=187.4

Q ss_pred             cccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCC
Q 007371          122 PCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARS  201 (606)
Q Consensus       122 ~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~  201 (606)
                      .++++|+++++.+..+|+    ..++|++|++++|.++.+|..+   .+|+.|++++|.++..+.+.  .+|++|++++|
T Consensus        38 ~~l~~LdLs~~~L~~lp~----~~~~L~~L~Ls~N~l~~lp~~~---~~L~~L~l~~n~l~~l~~lp--~~L~~L~L~~n  108 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE----LPPHLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLP--PLLEYLGVSNN  108 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCCC---TTCCEEECCSSCCSCCCSCC--TTCCEEECCSS
T ss_pred             cCCCEEEeCCCCCCCCCC----CCCCCCEEECCCCCCcccccch---hhhhhhhhhhcccchhhhhc--ccccccccccc
Confidence            367888888888888885    2578899999999988888654   56888888888876632221  46889999988


Q ss_pred             cCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371          202 TIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA  281 (606)
Q Consensus       202 ~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  281 (606)
                      .+..+|. ++.+++|++|++.++... ..+    .....+..+.+..+.....          ..++.++.++.+.+..+
T Consensus       109 ~l~~lp~-~~~l~~L~~L~l~~~~~~-~~~----~~~~~l~~l~~~~~~~~~~----------~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         109 QLEKLPE-LQNSSFLKIIDVDNNSLK-KLP----DLPPSLEFIAAGNNQLEEL----------PELQNLPFLTAIYADNN  172 (353)
T ss_dssp             CCSSCCC-CTTCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSSC----------CCCTTCTTCCEEECCSS
T ss_pred             ccccccc-hhhhccceeecccccccc-ccc----cccccccchhhcccccccc----------ccccccccceecccccc
Confidence            8888875 678889999998886543 333    2345667777665544322          34667778888888877


Q ss_pred             CCCCCCccccccCCcEEEEEeCCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccc
Q 007371          282 DAEILPPNFVSVELQRYRIRIGDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSV  361 (606)
Q Consensus       282 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~  361 (606)
                      ....++....  ..+.+..                         ..+.. ..++.   . ..++.|+.+++.++... .+
T Consensus       173 ~~~~~~~~~~--~~~~l~~-------------------------~~~~~-~~~~~---~-~~l~~L~~l~l~~n~~~-~~  219 (353)
T d1jl5a_         173 SLKKLPDLPL--SLESIVA-------------------------GNNIL-EELPE---L-QNLPFLTTIYADNNLLK-TL  219 (353)
T ss_dssp             CCSSCCCCCT--TCCEEEC-------------------------CSSCC-SSCCC---C-TTCTTCCEEECCSSCCS-SC
T ss_pred             cccccccccc--ccccccc-------------------------ccccc-ccccc---c-ccccccccccccccccc-cc
Confidence            7655443321  1111111                         11000 00000   0 01255666666654322 22


Q ss_pred             cccccCCCCCCCCcEEEeecCCCceEeccccccccccccccccccchhhhhhhhhhhccccccceeccc--ccccccccc
Q 007371          362 VHELDDGEGFPRLKHLHVKSCSEILHIVGSVRREEGELRRWEGNLNSTIQKCYEEMIGFRDIIHLQLSH--FPRLKEIWH  439 (606)
Q Consensus       362 ~~~l~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~L~~L~l~~--~~~l~~~~~  439 (606)
                      +.      ..+++..+.+.++.....            ....+.+..                 ..+..  +..+..++ 
T Consensus       220 ~~------~~~~l~~~~~~~~~~~~~------------~~~~~~l~~-----------------~~~~~~~~~~l~~l~-  263 (353)
T d1jl5a_         220 PD------LPPSLEALNVRDNYLTDL------------PELPQSLTF-----------------LDVSENIFSGLSELP-  263 (353)
T ss_dssp             CS------CCTTCCEEECCSSCCSCC------------CCCCTTCCE-----------------EECCSSCCSEESCCC-
T ss_pred             cc------cccccccccccccccccc------------ccccccccc-----------------ccccccccccccccc-
Confidence            22      344666666665542111            112222222                 22211  11111111 


Q ss_pred             CCCCCccccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeecc
Q 007371          440 GQALPVSFFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTD  519 (606)
Q Consensus       440 ~~~~~~~~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  519 (606)
                               .......+.. ..+..+ +    ..+++|++|++++|. ++.++.              .+++|+.|++++
T Consensus       264 ---------~~~~~~~~~~-~~~~~~-~----~~~~~L~~L~Ls~N~-l~~lp~--------------~~~~L~~L~L~~  313 (353)
T d1jl5a_         264 ---------PNLYYLNASS-NEIRSL-C----DLPPSLEELNVSNNK-LIELPA--------------LPPRLERLIASF  313 (353)
T ss_dssp             ---------TTCCEEECCS-SCCSEE-C----CCCTTCCEEECCSSC-CSCCCC--------------CCTTCCEEECCS
T ss_pred             ---------chhccccccc-Cccccc-c----ccCCCCCEEECCCCc-cCcccc--------------ccCCCCEEECCC
Confidence                     2333444444 344444 1    346899999999975 777653              478999999988


Q ss_pred             ccccccccccccccccCCCcceEeeccCCCCcccccCCcccccc
Q 007371          520 LPKLKRFCNFTRNIIELPKLRYLTIENCPDMETFISNSTSVLHM  563 (606)
Q Consensus       520 c~~L~~l~~~~~~~~~~~~L~~L~i~~Cp~L~~l~~~~~~~~~l  563 (606)
                      | ++++++.      .+++|++|++++|+ |+++|..+.+++.+
T Consensus       314 N-~L~~l~~------~~~~L~~L~L~~N~-L~~lp~~~~~L~~L  349 (353)
T d1jl5a_         314 N-HLAEVPE------LPQNLKQLHVEYNP-LREFPDIPESVEDL  349 (353)
T ss_dssp             S-CCSCCCC------CCTTCCEEECCSSC-CSSCCCCCTTCCEE
T ss_pred             C-cCCcccc------ccCCCCEEECcCCc-CCCCCccccccCee
Confidence            7 7888875      35789999999997 99999665555444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.4e-15  Score=136.20  Aligned_cols=160  Identities=22%  Similarity=0.263  Sum_probs=110.5

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      +.++.|+++++.+..++....+++|++|++++|.+..++.  +.++++|++|++++|.+..++. ++++++|++|+++++
T Consensus        40 ~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~l~~~  116 (199)
T d2omxa2          40 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNN  116 (199)
T ss_dssp             TTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred             cCCCEEECCCCCCCCccccccCCCcCcCccccccccCccc--ccCCcccccccccccccccccc-ccccccccccccccc
Confidence            6777888888877777655577777777777777766665  4677777777777777766653 667777777777777


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .+.....+..+++|+.|++++|.+..+| .+..+++|+.|++.+|.. ..++.  ++++++|++|++++|.+...     
T Consensus       117 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l-~~l~~--l~~l~~L~~L~ls~N~i~~i-----  187 (199)
T d2omxa2         117 QITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQV-TDLKP--LANLTTLERLDISSNKVSDI-----  187 (199)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred             ccccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccccc-cCCcc--ccCCCCCCEEECCCCCCCCC-----
Confidence            6666555667777777777777776654 466777777777777643 34443  67777777777777765443     


Q ss_pred             CccchHhhccCCCCCEE
Q 007371          260 SNASLVELERLTKLATL  276 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L  276 (606)
                           ..++.+++|++|
T Consensus       188 -----~~l~~L~~L~~L  199 (199)
T d2omxa2         188 -----SVLAKLTNLESL  199 (199)
T ss_dssp             -----GGGGGCTTCSEE
T ss_pred             -----ccccCCCCCCcC
Confidence                 335666666654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=3.5e-15  Score=136.22  Aligned_cols=164  Identities=23%  Similarity=0.293  Sum_probs=120.2

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      +.+++|+++++.+..++....+++|++|++++|.+..++.  ++.+++|++|++++|.++.+| .+.++++|+.|++++|
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~~  122 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLSLEHN  122 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEECTTS
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccccc-cccccccccccccccc
Confidence            5678888888888777665577888888888887777764  467888888888888877776 4677788888888887


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .+..+..+..+++|+.++++++.++..+ .+.++++|+++++++|.. ..++.  ++++++|++|++++|.+...     
T Consensus       123 ~~~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l-~~i~~--l~~l~~L~~L~Ls~N~i~~l-----  193 (210)
T d1h6ta2         123 GISDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQI-SDIVP--LAGLTKLQNLYLSKNHISDL-----  193 (210)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCBC-----
T ss_pred             cccccccccccccccccccccccccccc-cccccccccccccccccc-ccccc--ccCCCCCCEEECCCCCCCCC-----
Confidence            7766666777788888888877776553 466777888888877654 34543  67788888888887766533     


Q ss_pred             CccchHhhccCCCCCEEEEee
Q 007371          260 SNASLVELERLTKLATLEIEV  280 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~  280 (606)
                           ..+.++++|+.|++++
T Consensus       194 -----~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         194 -----RALAGLKNLDVLELFS  209 (210)
T ss_dssp             -----GGGTTCTTCSEEEEEE
T ss_pred             -----hhhcCCCCCCEEEccC
Confidence                 3467777788777763

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=4e-15  Score=134.70  Aligned_cols=174  Identities=19%  Similarity=0.228  Sum_probs=135.7

Q ss_pred             cCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCccc
Q 007371          108 TYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIV  187 (606)
Q Consensus       108 ~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i  187 (606)
                      ..+.+........++++++|+++++.+..+..  ++.+++|++|++++|.++.++. ++++++|++|++++|.+...+.+
T Consensus        26 ~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~--l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~~~~l  102 (199)
T d2omxa2          26 GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITPL  102 (199)
T ss_dssp             TCSSTTSEECHHHHTTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGG
T ss_pred             CCCCCCCccCHHHhcCCCEEECCCCCCCCccc--cccCCCcCcCccccccccCccc-ccCCccccccccccccccccccc
Confidence            33444444333467789999999988887754  4789999999999999988765 88999999999999988876668


Q ss_pred             CCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhh
Q 007371          188 GQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVEL  267 (606)
Q Consensus       188 ~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l  267 (606)
                      +++++|++|+++++.+..++ .+..+++|+.|++++|. ...++.  +..+++|+.|++.+|.+...          ..+
T Consensus       103 ~~l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~-l~~~~~--l~~~~~L~~L~l~~n~l~~l----------~~l  168 (199)
T d2omxa2         103 ANLTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNT-ISDISA--LSGLTSLQQLNFSSNQVTDL----------KPL  168 (199)
T ss_dssp             TTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCGG--GTTCTTCSEEECCSSCCCCC----------GGG
T ss_pred             cccccccccccccccccccc-ccchhhhhHHhhhhhhh-hccccc--ccccccccccccccccccCC----------ccc
Confidence            89999999999988777654 57889999999999876 345553  78999999999999877654          347


Q ss_pred             ccCCCCCEEEEeeCCCCCCCccccccCCcEE
Q 007371          268 ERLTKLATLEIEVADAEILPPNFVSVELQRY  298 (606)
Q Consensus       268 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L  298 (606)
                      +++++|++|++++|.++.++.-...++|+.|
T Consensus       169 ~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         169 ANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             cCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence            8899999999999988777543233555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=2.9e-15  Score=138.82  Aligned_cols=189  Identities=21%  Similarity=0.231  Sum_probs=103.9

Q ss_pred             cCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecC
Q 007371          143 KGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLS  222 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~  222 (606)
                      ..+.+|+.|++.+|.+++++ .+.++++|++|++++|.+.++..+.++++|+++++++|.++.++ .+.++++|+.+.++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred             HHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCceeeccccccccccccccccccccccccc-cccccccccccccc
Confidence            34555666666666665553 35566666666666666555444566666666666666555553 35556666666665


Q ss_pred             CCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEEEe
Q 007371          223 NCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRIRI  302 (606)
Q Consensus       223 ~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  302 (606)
                      +|.... ++.  +...+.++.+.++.+.+...          ..+..+++|++|.+.++.....+.              
T Consensus       116 ~~~~~~-~~~--~~~~~~~~~l~~~~~~~~~~----------~~~~~~~~L~~L~l~~n~~~~~~~--------------  168 (227)
T d1h6ua2         116 STQITD-VTP--LAGLSNLQVLYLDLNQITNI----------SPLAGLTNLQYLSIGNAQVSDLTP--------------  168 (227)
T ss_dssp             TSCCCC-CGG--GTTCTTCCEEECCSSCCCCC----------GGGGGCTTCCEEECCSSCCCCCGG--------------
T ss_pred             cccccc-cch--hccccchhhhhchhhhhchh----------hhhccccccccccccccccccchh--------------
Confidence            544322 221  44555666666555544322          234455556666655544432211              


Q ss_pred             CCCCCCCCCCcccCCCCCcEEEecCcccccccccchhHHHhhccccceecccccCcccccccccCCCCCCCCcEEEeec
Q 007371          303 GDESEDEFDPLLVKSEAPRLMMLKGLEKVSILQENDGTKMLLQRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKS  381 (606)
Q Consensus       303 ~~~~~~~~~~~l~~~~~L~~L~L~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~  381 (606)
                                 ++.+++|+.|++++|.+. .++.   +. .+++|++|++++| .++.++.    ++++++|++|+|++
T Consensus       169 -----------l~~l~~L~~L~Ls~n~l~-~l~~---l~-~l~~L~~L~Ls~N-~lt~i~~----l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         169 -----------LANLSKLTTLKADDNKIS-DISP---LA-SLPNLIEVHLKNN-QISDVSP----LANTSNLFIVTLTN  226 (227)
T ss_dssp             -----------GTTCTTCCEEECCSSCCC-CCGG---GG-GCTTCCEEECTTS-CCCBCGG----GTTCTTCCEEEEEE
T ss_pred             -----------hcccccceecccCCCccC-CChh---hc-CCCCCCEEECcCC-cCCCCcc----cccCCCCCEEEeeC
Confidence                       234455555555555432 2211   22 2478888888887 4566654    44888999998864

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=6e-15  Score=134.67  Aligned_cols=164  Identities=23%  Similarity=0.243  Sum_probs=130.3

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA  199 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~  199 (606)
                      .+.+|+.|+++++.+..++.  ++.+++|++|++++|.+++++. ++++++|++|++++|++++++.+..+++|+.|+++
T Consensus        44 ~L~~L~~L~l~~~~i~~l~~--l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             HhcCccEEECcCCCCCCchh--HhhCCCCCEEeCCCccccCccc-cccCccccccccccccccccccccccccccccccc
Confidence            56788899998888877764  4789999999999999988764 68899999999999998886678889999999999


Q ss_pred             CCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEe
Q 007371          200 RSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIE  279 (606)
Q Consensus       200 ~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~  279 (606)
                      +|.+..++ .+..+++++.+++++|.. ...+.  +..+++|+++++++|.+...          ..++++++|++|+++
T Consensus       121 ~~~~~~~~-~l~~l~~l~~l~~~~n~l-~~~~~--~~~l~~L~~l~l~~n~l~~i----------~~l~~l~~L~~L~Ls  186 (210)
T d1h6ta2         121 HNGISDIN-GLVHLPQLESLYLGNNKI-TDITV--LSRLTKLDTLSLEDNQISDI----------VPLAGLTKLQNLYLS  186 (210)
T ss_dssp             TSCCCCCG-GGGGCTTCCEEECCSSCC-CCCGG--GGGCTTCSEEECCSSCCCCC----------GGGTTCTTCCEEECC
T ss_pred             cccccccc-cccccccccccccccccc-ccccc--cccccccccccccccccccc----------ccccCCCCCCEEECC
Confidence            99887765 578889999999988654 33443  67889999999999877653          347888999999999


Q ss_pred             eCCCCCCCccccccCCcEEEE
Q 007371          280 VADAEILPPNFVSVELQRYRI  300 (606)
Q Consensus       280 ~~~~~~~~~~~~~~~L~~L~l  300 (606)
                      +|.++.++.-...++|+.|++
T Consensus       187 ~N~i~~l~~l~~l~~L~~L~L  207 (210)
T d1h6ta2         187 KNHISDLRALAGLKNLDVLEL  207 (210)
T ss_dssp             SSCCCBCGGGTTCTTCSEEEE
T ss_pred             CCCCCCChhhcCCCCCCEEEc
Confidence            888877764323356666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=6.8e-15  Score=141.37  Aligned_cols=176  Identities=21%  Similarity=0.192  Sum_probs=149.9

Q ss_pred             CCCeEEEecCCCCcccCCcc--cccccceee-cccccccccchhHhcCCCCCcEEEeeCCcCccC-CccccCCCCCcEEE
Q 007371          100 KDPIAISLTYGGIQVLPERL--QCPCLELLH-TEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSL-PSSLGCLINLQTLC  175 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~--~l~~L~~L~-~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~  175 (606)
                      +.+++|++++|.+..++...  .+..++.+. ...+....++...|.++++|++|++++|.+..+ +..+..+.+|+.++
T Consensus        56 ~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~  135 (284)
T d1ozna_          56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY  135 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhh
Confidence            78999999999997777665  577888877 456677788777789999999999999998874 44677889999999


Q ss_pred             eeCCCCCC-C-cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCC
Q 007371          176 LDYCRLKD-I-AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSG  252 (606)
Q Consensus       176 l~~~~~~~-~-~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~  252 (606)
                      +++|.++. + ..+..+.+|++|++++|+++.+|. .+.++++|+++++++|...+..|.. +..+++|++|++++|.+.
T Consensus       136 l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~-f~~l~~L~~L~l~~N~i~  214 (284)
T d1ozna_         136 LQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLS  214 (284)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCS
T ss_pred             hccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhH-hhhhhhcccccccccccc
Confidence            99999988 4 678899999999999999998754 6688999999999998876655665 999999999999999998


Q ss_pred             CccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          253 WEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       253 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      ..++        ..++++++|++|++++|.+.
T Consensus       215 ~~~~--------~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         215 ALPT--------EALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CCCH--------HHHTTCTTCCEEECCSSCEE
T ss_pred             cccc--------cccccccccCEEEecCCCCC
Confidence            8775        78899999999999988753

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=2.2e-14  Score=132.75  Aligned_cols=184  Identities=17%  Similarity=0.221  Sum_probs=130.7

Q ss_pred             CCCeEEEecCCCCcccCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCC
Q 007371          100 KDPIAISLTYGGIQVLPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYC  179 (606)
Q Consensus       100 ~~l~~L~l~~~~~~~l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~  179 (606)
                      ..++.|++.+|.+..++....+++|++|++++|.+..++.  +.++++++++++++|.++.++ .+..+++|+++.++++
T Consensus        41 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred             CCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccccc-cccccccccccccccc
Confidence            6788888888888777655578888888888887776655  577888888888888777664 4677888888888887


Q ss_pred             CCCCCcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCC
Q 007371          180 RLKDIAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGG  259 (606)
Q Consensus       180 ~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~  259 (606)
                      .......+.....++.+.++++.+...+ .+.+.++|++|++.+|... ..+.  ++++++|++|++++|.+...     
T Consensus       118 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~n~~~-~~~~--l~~l~~L~~L~Ls~n~l~~l-----  188 (227)
T d1h6ua2         118 QITDVTPLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVS-DLTP--LANLSKLTTLKADDNKISDI-----  188 (227)
T ss_dssp             CCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC-----
T ss_pred             cccccchhccccchhhhhchhhhhchhh-hhccccccccccccccccc-cchh--hcccccceecccCCCccCCC-----
Confidence            7766666677778888888777666543 3566778888888776533 3332  67788888888888766543     


Q ss_pred             CccchHhhccCCCCCEEEEeeCCCCCCCccccccCCcEEEE
Q 007371          260 SNASLVELERLTKLATLEIEVADAEILPPNFVSVELQRYRI  300 (606)
Q Consensus       260 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  300 (606)
                           ..++++++|++|++++|+++.++.....++|+.|++
T Consensus       189 -----~~l~~l~~L~~L~Ls~N~lt~i~~l~~l~~L~~L~l  224 (227)
T d1h6ua2         189 -----SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTL  224 (227)
T ss_dssp             -----GGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEE
T ss_pred             -----hhhcCCCCCCEEECcCCcCCCCcccccCCCCCEEEe
Confidence                 346777888888888877776654322355555544

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=4.5e-15  Score=142.29  Aligned_cols=89  Identities=22%  Similarity=0.199  Sum_probs=58.8

Q ss_pred             ccCCccEEEeccCCCcccccchhHHhhcCCCcEEEEecCCCcceeeccccccccccCCCCCCCCccceEeeccccccccc
Q 007371          447 FFNNLFDLVVDDCTNMSSAIPANLLRCLNNLVYLEVRNCDSLEEVLHLEELINADKEHIGPLFPKLFKLRLTDLPKLKRF  526 (606)
Q Consensus       447 ~l~~L~~L~i~~C~~L~~l~~~~~~~~l~~L~~L~i~~c~~l~~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l  526 (606)
                      .+++|++|++++|+.+++-.. ..+..+++|++|++++|..+++-...          .+..+|+|++|++.+|-.-..+
T Consensus       173 ~~~~L~~L~L~~~~~itd~~~-~~l~~~~~L~~L~L~~C~~i~~~~l~----------~L~~~~~L~~L~l~~~~~d~~l  241 (284)
T d2astb2         173 RCPNLVHLDLSDSVMLKNDCF-QEFFQLNYLQHLSLSRCYDIIPETLL----------ELGEIPTLKTLQVFGIVPDGTL  241 (284)
T ss_dssp             HCTTCSEEECTTCTTCCGGGG-GGGGGCTTCCEEECTTCTTCCGGGGG----------GGGGCTTCCEEECTTSSCTTCH
T ss_pred             ccccccccccccccCCCchhh-hhhcccCcCCEEECCCCCCCChHHHH----------HHhcCCCCCEEeeeCCCCHHHH
Confidence            457899999999988886533 33467889999999999877653221          2346889999999888322222


Q ss_pred             cccccccccCCCcceEeeccCCCCccc
Q 007371          527 CNFTRNIIELPKLRYLTIENCPDMETF  553 (606)
Q Consensus       527 ~~~~~~~~~~~~L~~L~i~~Cp~L~~l  553 (606)
                      ..   ....+|.|+   + +|..+..+
T Consensus       242 ~~---l~~~lp~L~---i-~~~~ls~~  261 (284)
T d2astb2         242 QL---LKEALPHLQ---I-NCSHFTTI  261 (284)
T ss_dssp             HH---HHHHSTTSE---E-SCCCSCCT
T ss_pred             HH---HHHhCcccc---c-cCccCCCC
Confidence            22   223456654   3 67777665

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2e-14  Score=137.65  Aligned_cols=60  Identities=25%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             CCCCCCEeeecCCcCC--cccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCC
Q 007371          189 QLKKLEILILARSTIK--QLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNS  249 (606)
Q Consensus       189 ~l~~L~~L~l~~~~l~--~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~  249 (606)
                      ...+|++||+++|.+.  .++..+.++++|++|++.+|......+.. ++++++|++|++++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~~L~~L~Ls~c  105 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNSNLVRLNLSGC  105 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCTTCSEEECTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCCCCcCcccccc
Confidence            3445556666555443  23334455556666666655433333333 555556666666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.5e-13  Score=111.74  Aligned_cols=99  Identities=24%  Similarity=0.276  Sum_probs=42.0

Q ss_pred             EEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccc
Q 007371          150 VLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLE  228 (606)
Q Consensus       150 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~  228 (606)
                      +|++++|.++.++. ++++.+|++|++++|.++. |+.++.+++|++|++++|.++.+| ++.++++|++|++++|.. .
T Consensus         2 ~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~i-~   78 (124)
T d1dcea3           2 VLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRL-Q   78 (124)
T ss_dssp             EEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCC-C
T ss_pred             EEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCcc-C
Confidence            44444444444432 4444444444444444444 334444444444444444444443 244444444444444332 1


Q ss_pred             cccH-HHhhCCCCCCEEEccCCCC
Q 007371          229 VIAP-NVISKLSQLEELYMGNSFS  251 (606)
Q Consensus       229 ~~p~-~~i~~l~~L~~L~l~~~~~  251 (606)
                      .++. ..++.+++|++|++++|.+
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             CCCCchhhcCCCCCCEEECCCCcC
Confidence            2211 1134444444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.1e-12  Score=122.54  Aligned_cols=41  Identities=12%  Similarity=0.153  Sum_probs=25.3

Q ss_pred             ccccceecccccCcccccccccCCCCCCCCcEEEeecCCCceEe
Q 007371          345 QRTEGLWLETLEGVQSVVHELDDGEGFPRLKHLHVKSCSEILHI  388 (606)
Q Consensus       345 ~~L~~L~l~~~~~~~~~~~~l~~~~~l~~L~~L~l~~c~~l~~~  388 (606)
                      ++++++....+..++.+|...  +.++++|++|++++++ ++.+
T Consensus       176 ~~l~~~~~l~~n~l~~l~~~~--f~~l~~L~~L~Ls~N~-l~~l  216 (242)
T d1xwdc1         176 TQLDELNLSDNNNLEELPNDV--FHGASGPVILDISRTR-IHSL  216 (242)
T ss_dssp             CCEEEEECTTCTTCCCCCTTT--TTTSCCCSEEECTTSC-CCCC
T ss_pred             hhhhccccccccccccccHHH--hcCCCCCCEEECCCCc-CCcc
Confidence            444555444445666666532  2378899999998875 5544

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.42  E-value=6.7e-13  Score=109.15  Aligned_cols=118  Identities=20%  Similarity=0.273  Sum_probs=88.1

Q ss_pred             ceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCC
Q 007371          125 ELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIK  204 (606)
Q Consensus       125 ~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~  204 (606)
                      |+|++++|.+..++.  ++.+++|++|++++|.++.+|..++.+++|++|++++|.++.++.++++++|++|++++|+++
T Consensus         1 R~L~Ls~n~l~~l~~--l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             SEEECTTSCCSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCCCCCcc--cccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccC
Confidence            567788888777765  477888888888888888888778888888888888888877556888888888888888887


Q ss_pred             ccc--ccccCCCCCCEEecCCCcccc--cccHHHhhCCCCCCEE
Q 007371          205 QLP--LEIGQLTRLQLLDLSNCWLLE--VIAPNVISKLSQLEEL  244 (606)
Q Consensus       205 ~lp--~~i~~L~~L~~L~l~~~~~~~--~~p~~~i~~l~~L~~L  244 (606)
                      .+|  ..++.+++|++|++++|....  ..+..++..+++|+.+
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            665  357778888888888865432  2344445556666655

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.7e-13  Score=118.73  Aligned_cols=129  Identities=14%  Similarity=0.152  Sum_probs=73.3

Q ss_pred             cCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeecCCcCCcccccc-cCCCCCCEEec
Q 007371          143 KGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILARSTIKQLPLEI-GQLTRLQLLDL  221 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~~~~l~~lp~~i-~~L~~L~~L~l  221 (606)
                      .++..+|.|++++|.|+.+|..+..+.+|++|++++|.++..+.+..+++|++|++++|.++.+|..+ ..+++|++|++
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccccee
Confidence            45556666666666666665555556666666666666655444566666666666666666665543 35666666666


Q ss_pred             CCCcccccccH-HHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEE
Q 007371          222 SNCWLLEVIAP-NVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLE  277 (606)
Q Consensus       222 ~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~  277 (606)
                      ++|.. ..++. ..+..+++|++|++++|.+...+.     .....+..+++|+.|+
T Consensus        95 ~~N~i-~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~-----~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNNSL-VELGDLDPLASLKSLTYLCILRNPVTNKKH-----YRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSCCC-CCGGGGGGGGGCTTCCEEECCSSGGGGSTT-----HHHHHHHHCTTCSEET
T ss_pred             ccccc-cccccccccccccccchhhcCCCccccccc-----hHHHHHHHCCCcCeeC
Confidence            66542 23322 115566666666666665533321     0112355566666654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.4e-12  Score=121.78  Aligned_cols=97  Identities=12%  Similarity=0.202  Sum_probs=45.0

Q ss_pred             eeecccccccccchhHhcCCCCCcEEEeeCCcCccCCc-cccCCCCCcEEEeeCCCCCC---CcccCCCCCCCEeeecCC
Q 007371          126 LLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPS-SLGCLINLQTLCLDYCRLKD---IAIVGQLKKLEILILARS  201 (606)
Q Consensus       126 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~-~~~~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~  201 (606)
                      +++.++.....+|.++   .+++++|++++|.++.+|. .|.++++|++|++++|.+..   +..+.++++++++.+..+
T Consensus        12 ~i~c~~~~l~~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCSSCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCCCcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            3333333444444433   2345555555555555443 34555555555555555433   233445555555554432


Q ss_pred             -cCCccc-ccccCCCCCCEEecCCCc
Q 007371          202 -TIKQLP-LEIGQLTRLQLLDLSNCW  225 (606)
Q Consensus       202 -~l~~lp-~~i~~L~~L~~L~l~~~~  225 (606)
                       .+..++ ..+.++++|++|++.+|.
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~  114 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTG  114 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCC
T ss_pred             ccccccccccccccccccccccchhh
Confidence             333332 234455555555555543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=3.7e-13  Score=116.55  Aligned_cols=129  Identities=18%  Similarity=0.148  Sum_probs=99.5

Q ss_pred             cCCcccccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-Cc-ccCCCCC
Q 007371          115 LPERLQCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IA-IVGQLKK  192 (606)
Q Consensus       115 l~~~~~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~-~i~~l~~  192 (606)
                      .+...+..++|.|++++|.+..++. ++..+++|++|++++|.++.++ .+..+++|++|++++|.++. ++ .+..+++
T Consensus        11 ~~~~~n~~~lr~L~L~~n~I~~i~~-~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          11 AAQYTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPD   88 (162)
T ss_dssp             SCEEECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hHhccCcCcCcEEECCCCCCCccCc-cccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCccccccccc
Confidence            3444466678888888888888864 4577888999999999888874 47888899999999998887 43 4567889


Q ss_pred             CCEeeecCCcCCcccc--cccCCCCCCEEecCCCccccccc---HHHhhCCCCCCEEEc
Q 007371          193 LEILILARSTIKQLPL--EIGQLTRLQLLDLSNCWLLEVIA---PNVISKLSQLEELYM  246 (606)
Q Consensus       193 L~~L~l~~~~l~~lp~--~i~~L~~L~~L~l~~~~~~~~~p---~~~i~~l~~L~~L~l  246 (606)
                      |++|++++|.++.++.  .+..+++|++|++++|.. ...|   ..++..+++|+.|+.
T Consensus        89 L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i-~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          89 LTELILTNNSLVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccceeccccccccccccccccccccchhhcCCCcc-ccccchHHHHHHHCCCcCeeCC
Confidence            9999999998887764  577889999999998764 3344   234788999998873

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=6.6e-12  Score=112.31  Aligned_cols=127  Identities=17%  Similarity=0.182  Sum_probs=96.1

Q ss_pred             cceeecccccccccchhHhcCCCCCcEEEeeCCcCcc-C-CccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeec
Q 007371          124 LELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSS-L-PSSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILA  199 (606)
Q Consensus       124 L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l-p~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~  199 (606)
                      .++++.+++.+..+|.++   ..++++|+|++|.|+. + +..|.++++|+.|++++|.+..  +..+..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            356667777777777765   3678888888888865 3 3456788888888888888777  4777888888888888


Q ss_pred             CCcCCcccc-cccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCc
Q 007371          200 RSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWE  254 (606)
Q Consensus       200 ~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~  254 (606)
                      +|+++.+|+ .+.++++|++|++++|. +..+|++.+..+++|++|++++|.+...
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~-l~~i~~~~f~~l~~L~~l~L~~N~~~~~  141 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQ-ISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSC-CCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             cccccccCHHHHhCCCcccccccCCcc-ccccCHHHhcCCcccccccccccccccc
Confidence            888887765 46788888888888865 4556555578888888888888876543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.27  E-value=1.1e-11  Score=110.83  Aligned_cols=125  Identities=18%  Similarity=0.233  Sum_probs=69.1

Q ss_pred             cEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC---CcccCCCCCCCEeeecCCcCCccc-ccccCCCCCCEEecCCC
Q 007371          149 KVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD---IAIVGQLKKLEILILARSTIKQLP-LEIGQLTRLQLLDLSNC  224 (606)
Q Consensus       149 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~---~~~i~~l~~L~~L~l~~~~l~~lp-~~i~~L~~L~~L~l~~~  224 (606)
                      ++++.+++.++.+|..+.  .++++|++++|.++.   +..+.++++|+.|++++|.+..++ ..+..+++|++|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            345555566666655442  456666666666543   244556666666666666555443 34455666666666664


Q ss_pred             cccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCCCC
Q 007371          225 WLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVADAE  284 (606)
Q Consensus       225 ~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~  284 (606)
                      . +..+|+..+.++++|++|++++|.+...++        ..+..+++|++|++++|.+.
T Consensus        89 ~-l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~--------~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          89 K-IKEISNKMFLGLHQLKTLNLYDNQISCVMP--------GSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             C-CCEECSSSSTTCTTCCEEECCSSCCCEECT--------TSSTTCTTCCEEECTTCCBC
T ss_pred             c-ccccCHHHHhCCCcccccccCCccccccCH--------HHhcCCcccccccccccccc
Confidence            3 334443335566666666666666555544        44555666666666655543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.8e-13  Score=137.48  Aligned_cols=83  Identities=22%  Similarity=0.202  Sum_probs=39.8

Q ss_pred             cCCCCCcEEEeeCCcCcc-----CCccccCCCCCcEEEeeCCCCCC--C----cccC-CCCCCCEeeecCCcCCc-----
Q 007371          143 KGTEGLKVLNFTRIHFSS-----LPSSLGCLINLQTLCLDYCRLKD--I----AIVG-QLKKLEILILARSTIKQ-----  205 (606)
Q Consensus       143 ~~l~~L~~L~l~~~~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--~----~~i~-~l~~L~~L~l~~~~l~~-----  205 (606)
                      ..++++++|+|++|.++.     ++..+..+++|++|++++|.+++  .    ..+. ...+|++|++++|.++.     
T Consensus        24 ~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~  103 (460)
T d1z7xw1          24 PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV  103 (460)
T ss_dssp             HHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred             HhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCcccccccc
Confidence            445555555555555442     23334455555555555555432  1    1111 12345555555555542     


Q ss_pred             ccccccCCCCCCEEecCCCc
Q 007371          206 LPLEIGQLTRLQLLDLSNCW  225 (606)
Q Consensus       206 lp~~i~~L~~L~~L~l~~~~  225 (606)
                      ++..+..+++|++|++++|.
T Consensus       104 l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1         104 LSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             HHHHTTSCTTCCEEECCSSB
T ss_pred             ccchhhcccccccccccccc
Confidence            33444555555555555543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.14  E-value=1.4e-12  Score=117.04  Aligned_cols=103  Identities=17%  Similarity=0.276  Sum_probs=53.2

Q ss_pred             cccccceeecccccccccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCCCcccCCCCCCCEeeec
Q 007371          120 QCPCLELLHTEGDGSMQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKDIAIVGQLKKLEILILA  199 (606)
Q Consensus       120 ~l~~L~~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~~i~~l~~L~~L~l~  199 (606)
                      .+++|++|++++|.+..++.  +..+++|++|++++|.++.+|..+..+.+|++|++++|.++.++.+.++++|++|+++
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~--l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISS--LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCC--HHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEES
T ss_pred             cccccceeECcccCCCCccc--ccCCccccChhhcccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44555555555555555532  3455555555555555555544444444555555555555553334555555555555


Q ss_pred             CCcCCccc--ccccCCCCCCEEecCCC
Q 007371          200 RSTIKQLP--LEIGQLTRLQLLDLSNC  224 (606)
Q Consensus       200 ~~~l~~lp--~~i~~L~~L~~L~l~~~  224 (606)
                      +|.++.++  ..+..+++|++|++++|
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N  150 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGN  150 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSS
T ss_pred             cchhccccccccccCCCccceeecCCC
Confidence            55555443  23455555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.08  E-value=1.6e-12  Score=116.63  Aligned_cols=139  Identities=21%  Similarity=0.258  Sum_probs=98.0

Q ss_pred             cccchhHhcCCCCCcEEEeeCCcCccCCccccCCCCCcEEEeeCCCCCC-CcccCCCCCCCEeeecCCcCCcccccccCC
Q 007371          135 MQVSDHFFKGTEGLKVLNFTRIHFSSLPSSLGCLINLQTLCLDYCRLKD-IAIVGQLKKLEILILARSTIKQLPLEIGQL  213 (606)
Q Consensus       135 ~~~~~~~~~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-~~~i~~l~~L~~L~l~~~~l~~lp~~i~~L  213 (606)
                      ..++..+ ..+++|++|++++|.++.++ .+..+++|++|++++|.++. +.....+.+|++|++++|.++.++ .+..+
T Consensus        38 ~~l~~sl-~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l  114 (198)
T d1m9la_          38 EKMDATL-STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKL  114 (198)
T ss_dssp             CCCHHHH-HHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHH-HHHHH
T ss_pred             hhhhhHH-hcccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccccccccccccccccccccc-ccccc
Confidence            3444454 77889999999999888875 58888999999999998877 444455667899999998888774 47788


Q ss_pred             CCCCEEecCCCcccccccH-HHhhCCCCCCEEEccCCCCCCccccCCCc--cchHhhccCCCCCEEE
Q 007371          214 TRLQLLDLSNCWLLEVIAP-NVISKLSQLEELYMGNSFSGWEKVEGGSN--ASLVELERLTKLATLE  277 (606)
Q Consensus       214 ~~L~~L~l~~~~~~~~~p~-~~i~~l~~L~~L~l~~~~~~~~~~~~~~~--~~~~~l~~l~~L~~L~  277 (606)
                      ++|++|++++|. +..++. ..++.+++|+.|++++|.+..........  .....+..+++|+.|+
T Consensus       115 ~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 VNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccch-hccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            889999998865 344442 22788888999998888654433211110  0112256777888775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=7.6e-11  Score=120.65  Aligned_cols=106  Identities=22%  Similarity=0.296  Sum_probs=81.2

Q ss_pred             CCcEEEeeCCcCcc--CCccccCCCCCcEEEeeCCCCCC------CcccCCCCCCCEeeecCCcCC-----ccccccc-C
Q 007371          147 GLKVLNFTRIHFSS--LPSSLGCLINLQTLCLDYCRLKD------IAIVGQLKKLEILILARSTIK-----QLPLEIG-Q  212 (606)
Q Consensus       147 ~L~~L~l~~~~l~~--lp~~~~~l~~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~-~  212 (606)
                      +|++||++++++++  +...+..+++++.|++++|.++.      ...+..+++|++||+++|.++     .+...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            58899999999987  45566788999999999999875      245678899999999999876     2333333 2


Q ss_pred             CCCCCEEecCCCccccc----ccHHHhhCCCCCCEEEccCCCCCC
Q 007371          213 LTRLQLLDLSNCWLLEV----IAPNVISKLSQLEELYMGNSFSGW  253 (606)
Q Consensus       213 L~~L~~L~l~~~~~~~~----~p~~~i~~l~~L~~L~l~~~~~~~  253 (606)
                      ..+|++|++++|.....    ++.. +..+++|++|++++|.+..
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~-l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSST-LRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHH-TTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCEEECCCCCccccccccccch-hhccccccccccccccchh
Confidence            45799999999864332    3333 6788999999999987643

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.4e-09  Score=89.69  Aligned_cols=98  Identities=26%  Similarity=0.233  Sum_probs=43.9

Q ss_pred             eeecccccccccchhHhcCCCCCcEEEeeCC-cCccCC-ccccCCCCCcEEEeeCCCCCC--CcccCCCCCCCEeeecCC
Q 007371          126 LLHTEGDGSMQVSDHFFKGTEGLKVLNFTRI-HFSSLP-SSLGCLINLQTLCLDYCRLKD--IAIVGQLKKLEILILARS  201 (606)
Q Consensus       126 ~L~~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~lp-~~~~~l~~L~~L~l~~~~~~~--~~~i~~l~~L~~L~l~~~  201 (606)
                      .+...++...++|..+ ..+++|+.|++.++ .++.++ ..|.++.+|+.|++++|+++.  +..+..+++|++|++++|
T Consensus        12 ~l~c~~~~~~~~p~~l-~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGALDSLHHL-PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCCTTTTTS-CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCccCcccc-cCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3333444444444432 34445555555433 244433 234444455555555554444  233444455555555555


Q ss_pred             cCCcccccccCCCCCCEEecCCC
Q 007371          202 TIKQLPLEIGQLTRLQLLDLSNC  224 (606)
Q Consensus       202 ~l~~lp~~i~~L~~L~~L~l~~~  224 (606)
                      +++.+|.++....+|++|++++|
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSS
T ss_pred             CCcccChhhhccccccccccCCC
Confidence            55444444433334444444443

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.80  E-value=6.1e-10  Score=109.27  Aligned_cols=14  Identities=21%  Similarity=0.358  Sum_probs=9.1

Q ss_pred             CCCCCcEEEeecCC
Q 007371          370 GFPRLKHLHVKSCS  383 (606)
Q Consensus       370 ~l~~L~~L~l~~c~  383 (606)
                      .+++|++|+++++.
T Consensus       300 ~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         300 KMPDLLFLELNGNR  313 (344)
T ss_dssp             HCTTCCEEECTTSB
T ss_pred             cCCCCCEEECCCCc
Confidence            35667777776654

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=2.9e-08  Score=84.41  Aligned_cols=92  Identities=15%  Similarity=0.039  Sum_probs=62.9

Q ss_pred             CCCCCEeeecCCcCCcccccccCCCCCCEEecCCCcccccccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhcc
Q 007371          190 LKKLEILILARSTIKQLPLEIGQLTRLQLLDLSNCWLLEVIAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELER  269 (606)
Q Consensus       190 l~~L~~L~l~~~~l~~lp~~i~~L~~L~~L~l~~~~~~~~~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~  269 (606)
                      +.....++.+++.+...|..+..+++|++|++.+++.+..++...+..+++|+.|++++|.+....+        ..+..
T Consensus         7 c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~--------~~f~~   78 (156)
T d2ifga3           7 PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP--------DAFHF   78 (156)
T ss_dssp             CSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECT--------TGGGS
T ss_pred             cCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccc--------ccccc
Confidence            3344556666666666677777777777777766555666665557777777777777777766654        56777


Q ss_pred             CCCCCEEEEeeCCCCCCCcc
Q 007371          270 LTKLATLEIEVADAEILPPN  289 (606)
Q Consensus       270 l~~L~~L~l~~~~~~~~~~~  289 (606)
                      +++|++|++++|++..+|..
T Consensus        79 l~~L~~L~Ls~N~l~~l~~~   98 (156)
T d2ifga3          79 TPRLSRLNLSFNALESLSWK   98 (156)
T ss_dssp             CSCCCEEECCSSCCSCCCST
T ss_pred             cccccceeccCCCCcccChh
Confidence            77777777777777766654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.58  E-value=1.3e-08  Score=99.45  Aligned_cols=83  Identities=17%  Similarity=0.233  Sum_probs=37.5

Q ss_pred             CCCCcEEEeeCCCCCC------CcccCCCCCCCEeeecCCcCCc------ccccccCCCCCCEEecCCCcccc----ccc
Q 007371          168 LINLQTLCLDYCRLKD------IAIVGQLKKLEILILARSTIKQ------LPLEIGQLTRLQLLDLSNCWLLE----VIA  231 (606)
Q Consensus       168 l~~L~~L~l~~~~~~~------~~~i~~l~~L~~L~l~~~~l~~------lp~~i~~L~~L~~L~l~~~~~~~----~~p  231 (606)
                      .+.|+.+.++++.+..      ...+....+|+.|++++|.+..      +...+..+++|++|++++|....    .+.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            3445555555554433      1223344555555555554431      22234445555555555543211    122


Q ss_pred             HHHhhCCCCCCEEEccCCCC
Q 007371          232 PNVISKLSQLEELYMGNSFS  251 (606)
Q Consensus       232 ~~~i~~l~~L~~L~l~~~~~  251 (606)
                      .. +...++|++|++++|.+
T Consensus       237 ~~-l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         237 IA-LKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HH-GGGCTTCCEEECTTCCC
T ss_pred             cc-ccccccchhhhhhcCcc
Confidence            22 44555555555555544

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.56  E-value=7.8e-09  Score=97.29  Aligned_cols=80  Identities=15%  Similarity=0.147  Sum_probs=62.9

Q ss_pred             hhHHhHhhhhhcccccccccCCCcccccccCCCCCceEEEEecchhhhhccCCccccccCCCCChHhHHHHhhhhhcCCC
Q 007371            6 LAAFSSIVAEELELDVVGIPSGDVAEKDRKDDQRRCTIILTSRKQDLLRIDMSCQKNFPIDALPRKEALQLFEKRMFNIP   85 (606)
Q Consensus         6 ~~~~~ddvw~~~~~~~~~~~~~~~~~~~~~~~~~gs~IivTTR~~~v~~~~~~~~~~~~l~~L~~~~~~~Lf~~~~~~~~   85 (606)
                      ...+.||||+..+|+.+.              ..||||+||||+.+|+.........|++++|+.+|||+||.++++..+
T Consensus       137 ~LlVLDDv~~~~~~~~~~--------------~~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~  202 (277)
T d2a5yb3         137 TLFVFDDVVQEETIRWAQ--------------ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP  202 (277)
T ss_dssp             EEEEEEEECCHHHHHHHH--------------HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC
T ss_pred             eeEecchhhHHhhhhhhc--------------ccCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHHHHHHHhCCcc
Confidence            345789999998887543              248999999999999433344457899999999999999999998877


Q ss_pred             ChhhHHHHHhhhcc
Q 007371           86 NVADLEKKMEETIR   99 (606)
Q Consensus        86 ~~~~l~~~~~di~~   99 (606)
                      .....++++++|++
T Consensus       203 ~~~~~~~~~~~iv~  216 (277)
T d2a5yb3         203 VGEKEEDVLNKTIE  216 (277)
T ss_dssp             --CHHHHHHHHHHH
T ss_pred             CchhhHHHHHHHHH
Confidence            66667778888877

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=9.2e-07  Score=75.42  Aligned_cols=65  Identities=25%  Similarity=0.112  Sum_probs=34.2

Q ss_pred             hHhcCCCCCcEEEeeCCcCccCC---ccccCCCCCcEEEeeCCCCCCCcc--cCCCCCCCEeeecCCcCC
Q 007371          140 HFFKGTEGLKVLNFTRIHFSSLP---SSLGCLINLQTLCLDYCRLKDIAI--VGQLKKLEILILARSTIK  204 (606)
Q Consensus       140 ~~~~~l~~L~~L~l~~~~l~~lp---~~~~~l~~L~~L~l~~~~~~~~~~--i~~l~~L~~L~l~~~~l~  204 (606)
                      .++.++++|++|++++|.++.++   ..+..+++|++|++++|.++..+.  ..+..+|+.|++++|.+.
T Consensus        59 ~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          59 IIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             HHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            34456777777777777766542   334455556666666555555211  112234555555555443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.7e-06  Score=72.36  Aligned_cols=85  Identities=22%  Similarity=0.183  Sum_probs=65.5

Q ss_pred             CCccccCCCCCcEEEeeCCCCCCC----cccCCCCCCCEeeecCCcCCcccc-cccCCCCCCEEecCCCccccccc----
Q 007371          161 LPSSLGCLINLQTLCLDYCRLKDI----AIVGQLKKLEILILARSTIKQLPL-EIGQLTRLQLLDLSNCWLLEVIA----  231 (606)
Q Consensus       161 lp~~~~~l~~L~~L~l~~~~~~~~----~~i~~l~~L~~L~l~~~~l~~lp~-~i~~L~~L~~L~l~~~~~~~~~p----  231 (606)
                      ++.....+++|++|++++|+++..    ..+..+++|++|++++|.++.+++ ...+..+|++|++.+|.......    
T Consensus        57 l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          57 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             hHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            444446789999999999998872    446789999999999999998875 22345579999999987655433    


Q ss_pred             --HHHhhCCCCCCEEE
Q 007371          232 --PNVISKLSQLEELY  245 (606)
Q Consensus       232 --~~~i~~l~~L~~L~  245 (606)
                        ..++..+++|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence              13467899999996

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.06  E-value=0.00021  Score=60.51  Aligned_cols=82  Identities=13%  Similarity=0.157  Sum_probs=41.1

Q ss_pred             cCCCCCcEEEeeCC-cCcc-----CCccccCCCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcCC-----c
Q 007371          143 KGTEGLKVLNFTRI-HFSS-----LPSSLGCLINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTIK-----Q  205 (606)
Q Consensus       143 ~~l~~L~~L~l~~~-~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~-----~  205 (606)
                      .+.+.|+.|+|+++ .+..     +-..+....+|++|++++|.+..  .    ..+...+.|++|++++|.+.     .
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            44566666666653 3432     22334455556666666665543  1    23334455666666665554     1


Q ss_pred             ccccccCCCCCCEEecCCC
Q 007371          206 LPLEIGQLTRLQLLDLSNC  224 (606)
Q Consensus       206 lp~~i~~L~~L~~L~l~~~  224 (606)
                      +-..+...+.|++|++++|
T Consensus        92 l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHhCCcCCEEECCCC
Confidence            2233444455555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.56  E-value=0.0013  Score=55.47  Aligned_cols=114  Identities=16%  Similarity=0.135  Sum_probs=64.4

Q ss_pred             cCCCCCcEEEeeCCC-CCC--C----cccCCCCCCCEeeecCCcCC-----cccccccCCCCCCEEecCCCccccc----
Q 007371          166 GCLINLQTLCLDYCR-LKD--I----AIVGQLKKLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLEV----  229 (606)
Q Consensus       166 ~~l~~L~~L~l~~~~-~~~--~----~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~----  229 (606)
                      .+.++|+.|+++++. ++.  .    ..+....+|++|++++|.+.     .+...+...+.|++|++++|.....    
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            345778888887653 544  1    45666677888888877665     3334455566777777777653321    


Q ss_pred             ccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeC
Q 007371          230 IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVA  281 (606)
Q Consensus       230 ~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~  281 (606)
                      +... +..-++|++|+++++....... ....+....+..-+.|++|+++.+
T Consensus        92 l~~a-L~~n~sL~~L~l~~n~~~~~g~-~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          92 LLRS-TLVTQSIVEFKADNQRQSVLGN-QVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHH-TTTTCCCSEEECCCCSSCCCCH-HHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHH-HHhCCcCCEEECCCCcCCCccH-HHHHHHHHHHHhCCCccEeeCcCC
Confidence            2222 5555667777777664332110 001123345555666777666543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.50  E-value=0.001  Score=56.08  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=37.5

Q ss_pred             cCCCCCcEEEeeCC-cCcc-----CCccccCCCCCcEEEeeCCCCCC--C----cccCCCCCCCEeeecCCcCC-----c
Q 007371          143 KGTEGLKVLNFTRI-HFSS-----LPSSLGCLINLQTLCLDYCRLKD--I----AIVGQLKKLEILILARSTIK-----Q  205 (606)
Q Consensus       143 ~~l~~L~~L~l~~~-~l~~-----lp~~~~~l~~L~~L~l~~~~~~~--~----~~i~~l~~L~~L~l~~~~l~-----~  205 (606)
                      .+.+.|+.|+++++ .++.     +-..+...++|+.|++++|.+..  .    ..+....+++.+++++|.+.     .
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            44566666666652 3432     22333445556666666655543  1    23334455555555555443     2


Q ss_pred             ccccccCCCCCCEEec
Q 007371          206 LPLEIGQLTRLQLLDL  221 (606)
Q Consensus       206 lp~~i~~L~~L~~L~l  221 (606)
                      +-..+...++|+.+++
T Consensus        94 l~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          94 LVEALQSNTSLIELRI  109 (166)
T ss_dssp             HHHGGGGCSSCCEEEC
T ss_pred             HHHHHHhCccccEEee
Confidence            2233444444544444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.14  E-value=0.0014  Score=55.12  Aligned_cols=115  Identities=11%  Similarity=0.074  Sum_probs=75.5

Q ss_pred             ccCCCCCcEEEeeCC-CCCC------CcccCCCCCCCEeeecCCcCC-----cccccccCCCCCCEEecCCCccccc---
Q 007371          165 LGCLINLQTLCLDYC-RLKD------IAIVGQLKKLEILILARSTIK-----QLPLEIGQLTRLQLLDLSNCWLLEV---  229 (606)
Q Consensus       165 ~~~l~~L~~L~l~~~-~~~~------~~~i~~l~~L~~L~l~~~~l~-----~lp~~i~~L~~L~~L~l~~~~~~~~---  229 (606)
                      ..+.+.|++|+++++ .++.      ...+...++|++|++++|.+.     .+-..+...++++.+++.+|.....   
T Consensus        13 ~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~   92 (166)
T d1io0a_          13 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL   92 (166)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHH
Confidence            356788999999884 4655      155667889999999999776     3334566778899999988754322   


Q ss_pred             -ccHHHhhCCCCCCEEEccCCCCCCccccCCCccchHhhccCCCCCEEEEeeCC
Q 007371          230 -IAPNVISKLSQLEELYMGNSFSGWEKVEGGSNASLVELERLTKLATLEIEVAD  282 (606)
Q Consensus       230 -~p~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~  282 (606)
                       +... +...++|+.+++..+......  ....+....+...+.|++|++.++.
T Consensus        93 ~l~~~-l~~~~~L~~l~L~l~~n~i~~--~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          93 ALVEA-LQSNTSLIELRIDNQSQPLGN--NVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHG-GGGCSSCCEEECCCCSSCCCH--HHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHH-HHhCccccEEeeccCCCcCcH--HHHHHHHHHHHhCCCcCEEeCcCCC
Confidence             2233 667788888777644221110  0112344567788888888887554