Citrus Sinensis ID: 007379

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600------

MAAATTTSSLIDLGSCKDSCSSPSFSSSRARIAFSLKKPTEITCSLQTPSILHFPKQSPKYPPSPAATPPPSSPPLTTKQQPKENDNFAPSKWNFLQKAAALALDAVENALVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLAKQA

cccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEccccccccccccccccccccEEEEEEEccEEEEEEEEEccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccccccEEEEEEccEEEEEEEcccccEEEEccccccEEEEEEccccccccccccccEEccccccEEEEEEEccccccEEEEEEccccccEEEEEEEcccccccccccccccEEEEEEccccccHHHHHcccccEEEcccccEEEEEEEccccccccEEEEEcccEEEEEcccEEEcccccEEEEEEEEcccccccccccccccccEEEEEEEEcccccEEEEEEccccccccccccccccccccccccEEEEEEEcccccccEEEEEEcccccEEEEEcccccEEcccEEEcccccccccccEEEEEEEEEcccccEEEEEEEcccccccEEEEcccccccccccccccccHHHHHc

cccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccEEcccccccccccccccccEEEEcccccccEEEEccccccccccccccccccccEEEEEEEcccEEEEEEEEEEcHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHccccccccccccccEEEEEEccEEEEEEcccccEEEEEcccccEEEccEEccccccccccccccccccccccEEEEEcccccccEEEEEEEcccccEcccccEccccccEEEcEEEcccEEEEccccEEEcHHHHHcccccEEEccccccEEEEEEccccccccEEEEEccccEEEEEEEccEcccccEEEEEEccccccccHHccccccccccEEEEEEEcccccEEEEEccccccccccccccccHcHcccccEEEEEEEEcccccccEEEEEEccccEEEEEEEcccccccccEEEccccccccccccEEEEEEEEcccccEEEEEEEcccccEEEEEEcccccccccEEEEccHHHHHHcc

maaatttsslidlgsckdscsspsfsssRARIAFSlkkpteitcslqtpsilhfpkqspkyppspaatpppsspplttkqqpkendnfapsKWNFLQKAAALALDAVENALVSqerqhplpktadptvqiagnfspvpekpvcqnlpttgkvpdciqgvyvrnganplhepvaghhffdgdgmVHAVKFNkgsvsyscrftetnrfvqerslgrpvfpkaigELHGHTGIARLLLFYSRAlfglvdpshgtgvaNAGLVYFNNRllamseddlpyhvrvtpsgelktvgrfdfsgqlkstmiahpkvdpvtgdlFALSydvvkkpylkyfrfspqgikspdveipleeptmmhdfaitenfvvvpdQQVVFKLKEmirggspviydknkvsrfgildknatdaskmkwidapdcfcfhlwnaweeperdeVVVIGscmtpadsifNECDESLKSVLSEIRLNLktgestrrpiisedeqvnleagmvnrnllgrKTRFAYLAlaepwpkvsgfakVDLLTGQVnkfiygdqryggeplffprdpnseneddgYILAFVHDEKEWKSELQIVNAMTLELEAtvklpsrvpygfhgtfiGAKDLAKQA

maaatttsslidlgsckdscsspsFSSSRARIAFSLKKPTEITCSLQTPSILHFPKQSPKYPPSPAATPPPSSPPLTTKQQPKENDNFAPSKWNFLQKAAALALDAVENALVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTetnrfvqerslgrPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVtpsgelktvgRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYfrfspqgikspdVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKemirggspviydknkvsrfGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNlktgestrrpiisedeqvnleagmvnrNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLAKQA

MAAATTTSSLIDLGsckdscsspsfsssrariafsLKKPTEITCSLQTPSILHFPKQspkyppspaatpppsspplttkqqpKENDNFAPSKWNFlqkaaalaldavenalVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLAKQA

*****************************************ITC***********************************************KWNFLQKAAALALDAVENAL*****************************PVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNL****************VNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFP*********DGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGA*******

*************************************************************************************************KAAALALDAVENALVS********KTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLA***

*********LIDLGS*************RARIAFSLKKPTEITCSLQTPSILHFPKQ**************************ENDNFAPSKWNFLQKAAALALDAVENALVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLAKQA

***************************************TEITCSLQTPSILHFP***********************************SKWNFLQKAAALALDAVENALVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDL****

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		606	2.2.26 [Sep-21-2011]
Q9M6E8		615	9-cis-epoxycarotenoid dio	N/A	no	0.950	0.936	0.738	0.0
Q9LRR7		599	9-cis-epoxycarotenoid dio	yes	no	0.919	0.929	0.766	0.0
Q9M9F5		657	9-cis-epoxycarotenoid dio	no	no	0.856	0.789	0.754	0.0
Q9C6Z1		589	Probable 9-cis-epoxycarot	no	no	0.943	0.971	0.67	0.0
O49505		583	9-cis-epoxycarotenoid dio	no	no	0.909	0.945	0.654	0.0
O24592		604	9-cis-epoxycarotenoid dio	N/A	no	0.955	0.958	0.639	0.0
Q9LRM7		577	9-cis-epoxycarotenoid dio	no	no	0.879	0.923	0.559	0.0
O49675		595	Probable carotenoid cleav	no	no	0.785	0.8	0.392	6e-99
Q94IR2		543	Carotenoid 9,10(9',10')-c	N/A	no	0.808	0.902	0.381	3e-97
Q84KG5		546	Carotenoid 9,10(9',10')-c	N/A	no	0.801	0.890	0.379	7e-94

>sp\|Q9M6E8\|NCED1_PHAVU 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic OS=Phaseolus vulgaris GN=NCED1 PE=2 SV=1	Back alignment and function desciption

 Score =  912 bits (2358), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/611 (73%), Positives = 498/611 (81%), Gaps = 35/611 (5%)

Query: 19  SCSSP----SFSSSRARIAFSLKKPTE-----ITCSLQTPSILHFPKQSPKYPPSPAATP 69
           SCSSP    + +SS        KK +      ITCSLQT   LH+PKQ      S   TP
Sbjct: 17  SCSSPFKDLASTSSSPTTLLPFKKRSSSNTNTITCSLQT---LHYPKQYQPTSTSTTTTP 73

Query: 70  PP--------------SSPPLTTKQQPKENDNFAPSKWNFLQKAAALALDAVENALVSQE 115
            P               + PL+  +QP       P KWNFLQKAAA  LD VE ALVS E
Sbjct: 74  TPIKPTTTTTTTTPHRETKPLSDTKQP------FPQKWNFLQKAAATGLDMVETALVSHE 127

Query: 116 RQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGH 175
            +HPLPKTADP VQIAGNF+PVPE    Q LP  GK+P CI GVYVRNGANPL+EPVAGH
Sbjct: 128 SKHPLPKTADPKVQIAGNFAPVPEHAADQALPVVGKIPKCIDGVYVRNGANPLYEPVAGH 187

Query: 176 HFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLL 235
           HFFDGDGMVHAVKF  G+ SY+CRFTET R  QE+SLGRPVFPKAIGELHGH+GIARLLL
Sbjct: 188 HFFDGDGMVHAVKFTNGAASYACRFTETQRLAQEKSLGRPVFPKAIGELHGHSGIARLLL 247

Query: 236 FYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSG 295
           FY+R+LF LVD SHG GVANAGLVYFNN LLAMSEDDLPYHVR+T +G+L TVGR+DF+G
Sbjct: 248 FYARSLFQLVDGSHGMGVANAGLVYFNNHLLAMSEDDLPYHVRITSNGDLTTVGRYDFNG 307

Query: 296 QLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDF 355
           QL STMIAHPK+DPV GDL ALSYDVV+KPYLKYFRFS  G+KSPDVEIPL+EPTMMHDF
Sbjct: 308 QLNSTMIAHPKLDPVNGDLHALSYDVVQKPYLKYFRFSADGVKSPDVEIPLKEPTMMHDF 367

Query: 356 AITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCF 415
           AITENFVVVPDQQVVFKL EMI GGSPV+YDKNK SRFGILDKNA DA+ M+WIDAP+CF
Sbjct: 368 AITENFVVVPDQQVVFKLTEMITGGSPVVYDKNKTSRFGILDKNAKDANAMRWIDAPECF 427

Query: 416 CFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIIS 475
           CFHLWNAWEEPE DE+VVIGSCMTPADSIFNECDESLKSVLSEIRLNL+TG+STRRPIIS
Sbjct: 428 CFHLWNAWEEPETDEIVVIGSCMTPADSIFNECDESLKSVLSEIRLNLRTGKSTRRPIIS 487

Query: 476 EDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGG 535
           + EQVNLEAGMVNRN LGRKT+FAYLALAEPWPKVSGFAKVDL +G+V K++YG++++GG
Sbjct: 488 DAEQVNLEAGMVNRNKLGRKTQFAYLALAEPWPKVSGFAKVDLFSGEVQKYMYGEEKFGG 547

Query: 536 EPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGT 595
           EPLF    PN E E DGYILAFVHDEKEWKSELQIVNA  L+LEA++KLPSRVPYGFHGT
Sbjct: 548 EPLFL---PNGEEEGDGYILAFVHDEKEWKSELQIVNAQNLKLEASIKLPSRVPYGFHGT 604

Query: 596 FIGAKDLAKQA 606
           FI +KDL KQA
Sbjct: 605 FIHSKDLRKQA 615

Has a 11,12(11',12') 9-cis epoxycarotenoid cleavage activity. Catalyzes the first step of abscisic-acid biosynthesis from carotenoids, in response to water stress. Active on 9-cis-violaxanthin and 9'-cis-neoxanthin, but not on the all-trans isomers of violaxanthin and neoxanthin.
Phaseolus vulgaris (taxid: 3885)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 5EC: 1

>sp\|Q9LRR7\|NCED3_ARATH 9-cis-epoxycarotenoid dioxygenase NCED3, chloroplastic OS=Arabidopsis thaliana GN=NCED3 PE=2 SV=1	Back alignment and function description

>sp\|Q9M9F5\|NCED9_ARATH 9-cis-epoxycarotenoid dioxygenase NCED9, chloroplastic OS=Arabidopsis thaliana GN=NCED9 PE=2 SV=1	Back alignment and function description

>sp\|Q9C6Z1\|NCED5_ARATH Probable 9-cis-epoxycarotenoid dioxygenase NCED5, chloroplastic OS=Arabidopsis thaliana GN=NCED5 PE=1 SV=1	Back alignment and function description

>sp\|O49505\|NCED2_ARATH 9-cis-epoxycarotenoid dioxygenase NCED2, chloroplastic OS=Arabidopsis thaliana GN=NCED2 PE=2 SV=1	Back alignment and function description

>sp\|O24592\|NCED1_MAIZE 9-cis-epoxycarotenoid dioxygenase 1, chloroplastic OS=Zea mays GN=VP14 PE=1 SV=2	Back alignment and function description

>sp\|Q9LRM7\|NCED6_ARATH 9-cis-epoxycarotenoid dioxygenase NCED6, chloroplastic OS=Arabidopsis thaliana GN=NCED6 PE=2 SV=1	Back alignment and function description

>sp\|O49675\|CCD4_ARATH Probable carotenoid cleavage dioxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=CCD4 PE=1 SV=1	Back alignment and function description

>sp\|Q94IR2\|CCD1_PHAVU Carotenoid 9,10(9',10')-cleavage dioxygenase 1 OS=Phaseolus vulgaris GN=CCD1 PE=1 SV=1	Back alignment and function description

>sp\|Q84KG5\|CCD_CROSA Carotenoid 9,10(9',10')-cleavage dioxygenase OS=Crocus sativus GN=CCD PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		606
355398706		606	putative 9-cis-epoxycarotenoid dioxygena	1.0	1.0	0.986	0.0
83628266		606	9-cis-epoxycarotenoid dioxygenase 3 [Cit	1.0	1.0	0.986	0.0
68300870		605	9-cis-epoxycarotenoid dioxygenase 1 [Cit	0.998	1.0	0.986	0.0
90991018		569	9-cis-epoxycarotenoid dioxygenase [Citru	0.938	1.0	0.989	0.0
90991020		569	9-cis-epoxycarotenoid dioxygenase [Citru	0.938	1.0	0.985	0.0
90991022		569	9-cis-epoxycarotenoid dioxygenase [Citru	0.937	0.998	0.980	0.0
224121552		599	predicted protein [Populus trichocarpa]	0.929	0.939	0.808	0.0
224114842		592	predicted protein [Populus trichocarpa]	0.919	0.940	0.804	0.0
225462098		609	PREDICTED: 9-cis-epoxycarotenoid dioxyge	0.929	0.924	0.779	0.0
147856958		610	hypothetical protein VITISV_018449 [Viti	0.929	0.922	0.779	0.0

>gi\|355398706\|gb\|AER70359.1\| putative 9-cis-epoxycarotenoid dioxygenase 3 [Citrus sinensis]	Back alignment and taxonomy information

 Score = 1243 bits (3216), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 598/606 (98%), Positives = 603/606 (99%)

Query: 1   MAAATTTSSLIDLGSCKDSCSSPSFSSSRARIAFSLKKPTEITCSLQTPSILHFPKQSPK 60
           MAAATTTSSLIDLGSCKDSCSSPSFSSSRARIAFSLKKPTEITCSLQTPSILHFPKQSPK
Sbjct: 1   MAAATTTSSLIDLGSCKDSCSSPSFSSSRARIAFSLKKPTEITCSLQTPSILHFPKQSPK 60

Query: 61  YPPSPAATPPPSSPPLTTKQQPKENDNFAPSKWNFLQKAAALALDAVENALVSQERQHPL 120
           YPPSPAA+PPPSSPPLTTKQQPKENDNFAPSKWNFLQKAAALALDAVENALVSQERQHPL
Sbjct: 61  YPPSPAASPPPSSPPLTTKQQPKENDNFAPSKWNFLQKAAALALDAVENALVSQERQHPL 120

Query: 121 PKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDG 180
           PKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDG
Sbjct: 121 PKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDG 180

Query: 181 DGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRA 240
           DGMVHAV+FNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRA
Sbjct: 181 DGMVHAVQFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRA 240

Query: 241 LFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKST 300
           LFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSG+LKTVGRFDFSGQLKST
Sbjct: 241 LFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGDLKTVGRFDFSGQLKST 300

Query: 301 MIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITEN 360
           MIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITEN
Sbjct: 301 MIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITEN 360

Query: 361 FVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLW 420
           FVVVPDQQVVFKL EMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLW
Sbjct: 361 FVVVPDQQVVFKLNEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLW 420

Query: 421 NAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQV 480
           NAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRP+ISEDEQV
Sbjct: 421 NAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPLISEDEQV 480

Query: 481 NLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFF 540
           NLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYG QRYGGEPLFF
Sbjct: 481 NLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGGQRYGGEPLFF 540

Query: 541 PRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAK 600
           PRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPS+VPYGFHGTFI AK
Sbjct: 541 PRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSQVPYGFHGTFISAK 600

Query: 601 DLAKQA 606
           DLAKQA
Sbjct: 601 DLAKQA 606

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|83628266\|gb\|ABC26013.1\| 9-cis-epoxycarotenoid dioxygenase 3 [Citrus clementina]	Back alignment and taxonomy information

>gi\|68300870\|gb\|AAY89370.1\| 9-cis-epoxycarotenoid dioxygenase 1 [Citrus sinensis]	Back alignment and taxonomy information

>gi\|90991018\|dbj\|BAE92963.1\| 9-cis-epoxycarotenoid dioxygenase [Citrus unshiu]	Back alignment and taxonomy information

>gi\|90991020\|dbj\|BAE92964.1\| 9-cis-epoxycarotenoid dioxygenase [Citrus sinensis]	Back alignment and taxonomy information

>gi\|90991022\|dbj\|BAE92965.1\| 9-cis-epoxycarotenoid dioxygenase [Citrus limon]	Back alignment and taxonomy information

>gi\|224121552\|ref\|XP_002330729.1\| predicted protein [Populus trichocarpa] gi\|222872505\|gb\|EEF09636.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|224114842\|ref\|XP_002316871.1\| predicted protein [Populus trichocarpa] gi\|222859936\|gb\|EEE97483.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|225462098\|ref\|XP_002277354.1\| PREDICTED: 9-cis-epoxycarotenoid dioxygenase NCED1, chloroplastic [Vitis vinifera]	Back alignment and taxonomy information

>gi\|147856958\|emb\|CAN81383.1\| hypothetical protein VITISV_018449 [Vitis vinifera]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		606
TAIR\|locus:2091652		599	NCED3 "nine-cis-epoxycarotenoi	0.902	0.913	0.753	3.6e-231
TAIR\|locus:2032085		657	NCED9 "nine-cis-epoxycarotenoi	0.810	0.747	0.776	5.9e-215
TAIR\|locus:2202492		589	NCED5 "nine-cis-epoxycarotenoi	0.851	0.876	0.718	5.1e-209
TAIR\|locus:2124489		583	NCED2 "nine-cis-epoxycarotenoi	0.849	0.883	0.681	1.2e-198
TAIR\|locus:2093751		577	NCED6 "nine-cis-epoxycarotenoi	0.806	0.847	0.590	7.3e-162
TAIR\|locus:2134796		595	NCED4 "nine-cis-epoxycarotenoi	0.792	0.806	0.395	3.8e-94
TAIR\|locus:2087418		538	CCD1 "carotenoid cleavage diox	0.773	0.871	0.385	3.7e-87
ASPGD\|ASPL0000046682		480	AN1643 [Emericella nidulans (t	0.465	0.587	0.284	4.3e-31
UNIPROTKB\|Q2KEQ1		489	MGCH7_ch7g985 "Putative unchar	0.275	0.341	0.324	2.9e-24
UNIPROTKB\|Q53353		485	Q53353 "Lignostilbene-alpha,be	0.275	0.344	0.333	4.3e-23

TAIR\|locus:2091652 NCED3 "nine-cis-epoxycarotenoid dioxygenase 3" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2230 (790.1 bits), Expect = 3.6e-231, P = 3.6e-231
 Identities = 426/565 (75%), Positives = 469/565 (83%)

Query:    42 ITCSLQTPSILHFPKQXXXXXXXXXXXXXXXXXXXXXXXXXKENDNFAPSKWNFXXXXXX 101
             ++ +L TP  LHFPKQ                         KE++     + N       
Sbjct:    50 VSSALHTPPALHFPKQSSNSPAIVVKPKA------------KESNT---KQMNLFQRAAA 94

Query:   102 XXXXXXXXXXVSQERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYV 161
                       VS E+ HPLPKTADP+VQIAGNF+PV E+PV +NLP  GK+PD I+GVYV
Sbjct:    95 AALDAAEGFLVSHEKLHPLPKTADPSVQIAGNFAPVNEQPVRRNLPVVGKLPDSIKGVYV 154

Query:   162 RNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAI 221
             RNGANPLHEPV GHHFFDGDGMVHAVKF  GS SY+CRFT+TNRFVQER LGRPVFPKAI
Sbjct:   155 RNGANPLHEPVTGHHFFDGDGMVHAVKFEHGSASYACRFTQTNRFVQERQLGRPVFPKAI 214

Query:   222 GELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTP 281
             GELHGHTGIARL+LFY+RA  G+VDP+HGTGVANAGLVYFN RLLAMSEDDLPY V++TP
Sbjct:   215 GELHGHTGIARLMLFYARAAAGIVDPAHGTGVANAGLVYFNGRLLAMSEDDLPYQVQITP 274

Query:   282 SGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPD 341
             +G+LKTVGRFDF GQL+STMIAHPKVDP +G+LFALSYDVV KPYLKYFRFSP G KSPD
Sbjct:   275 NGDLKTVGRFDFDGQLESTMIAHPKVDPESGELFALSYDVVSKPYLKYFRFSPDGTKSPD 334

Query:   342 VEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNAT 401
             VEI L++PTMMHDFAITENFVVVPDQQVVFKL EMIRGGSPV+YDKNKV+RFGILDK A 
Sbjct:   335 VEIQLDQPTMMHDFAITENFVVVPDQQVVFKLPEMIRGGSPVVYDKNKVARFGILDKYAE 394

Query:   402 DASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRL 461
             D+S +KWIDAPDCFCFHLWNAWEEPE DEVVVIGSCMTP DSIFNE DE+LKSVLSEIRL
Sbjct:   395 DSSNIKWIDAPDCFCFHLWNAWEEPETDEVVVIGSCMTPPDSIFNESDENLKSVLSEIRL 454

Query:   462 NLKTGESTRRPIIS-EDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLT 520
             NLKTGESTRRPIIS ED+QVNLEAGMVNRN+LGRKT+FAYLALAEPWPKVSGFAKVDL T
Sbjct:   455 NLKTGESTRRPIISNEDQQVNLEAGMVNRNMLGRKTKFAYLALAEPWPKVSGFAKVDLTT 514

Query:   521 GQVNKFIYGDQRYGGEPLFFPRDPNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEA 580
             G+V K +YGD RYGGEPLF P +   E  D+GYIL FVHDEK WKSELQIVNA++LE+EA
Sbjct:   515 GEVKKHLYGDNRYGGEPLFLPGEGGEE--DEGYILCFVHDEKTWKSELQIVNAVSLEVEA 572

Query:   581 TVKLPSRVPYGFHGTFIGAKDLAKQ 605
             TVKLPSRVPYGFHGTFIGA DLAKQ
Sbjct:   573 TVKLPSRVPYGFHGTFIGADDLAKQ 597

GO:0009507 "chloroplast" evidence=ISM

GO:0009414 "response to water deprivation" evidence=RCA;IMP

GO:0045549 "9-cis-epoxycarotenoid dioxygenase activity" evidence=ISS;IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009688 "abscisic acid biosynthetic process" evidence=ISS

GO:0042538 "hyperosmotic salinity response" evidence=RCA;IMP

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009409 "response to cold" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

TAIR\|locus:2032085 NCED9 "nine-cis-epoxycarotenoid dioxygenase 9" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2202492 NCED5 "nine-cis-epoxycarotenoid dioxygenase 5" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2124489 NCED2 "nine-cis-epoxycarotenoid dioxygenase 2" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2093751 NCED6 "nine-cis-epoxycarotenoid dioxygenase 6" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2134796 NCED4 "nine-cis-epoxycarotenoid dioxygenase 4" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2087418 CCD1 "carotenoid cleavage dioxygenase 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000046682 AN1643 [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2KEQ1 MGCH7_ch7g985 "Putative uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

UNIPROTKB\|Q53353 Q53353 "Lignostilbene-alpha,beta-dioxygenase isozyme I" [Sphingomonas paucimobilis (taxid:13689)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LRR7	NCED3_ARATH	1, ., 1, 3, ., 1, 1, ., 5, 1	0.7669	0.9191	0.9298	yes	no
Q9M6E8	NCED1_PHAVU	1, ., 1, 3, ., 1, 1, ., 5, 1	0.7381	0.9504	0.9365	N/A	no
O24592	NCED1_MAIZE	1, ., 1, 3, ., 1, 1, ., 5, 1	0.6394	0.9554	0.9586	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1	LOW CONFIDENCE prediction!
3rd Layer	3.1.1.64	LOW CONFIDENCE prediction!
3rd Layer	1.13.11.51	0.979
3rd Layer	5.2.1	LOW CONFIDENCE prediction!
3rd Layer	1.13.11	0.691
4th Layer	5.2.1.7	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		606
PLN02258		590	PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygen	0.0
pfam03055		469	pfam03055, RPE65, Retinal pigment epithelial membr	1e-172
PLN02491		545	PLN02491, PLN02491, carotenoid 9,10(9',10')-cleava	1e-121
COG3670		490	COG3670, COG3670, Lignostilbene-alpha,beta-dioxyge	1e-94
PLN02969		610	PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygen	2e-09

>gnl\|CDD\|215145 PLN02258, PLN02258, 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

 Score = 1131 bits (2928), Expect = 0.0
 Identities = 446/603 (73%), Positives = 494/603 (81%), Gaps = 19/603 (3%)

Query: 5   TTTSSLIDLGSCKDSCSSPSFSSSRARIAFSLKKPTEITCSLQTPSILHFPKQSPKYPPS 64
            T+ S     S   S S  S  SS +      ++    +  L TPSIL  PK S   PPS
Sbjct: 6   PTSRSQSHASSSSSSSSQSSPPSSTSPRP--RRRKPSASSLLHTPSILPLPKLSSPSPPS 63

Query: 65  PAATPPPSSPPLTTKQQPKENDNFAPSKWNFLQKAAALALDAVENALVS-QERQHPLPKT 123
               P  ++                  + N LQ+AAA ALDAVE+ALVS  ERQHPLPKT
Sbjct: 64  VTLPPAATT---------------QTPQLNPLQRAAAAALDAVESALVSHLERQHPLPKT 108

Query: 124 ADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGM 183
           ADP VQIAGNF+PVPE+PV  NLP TG++PDCI GVYVRNGANPL EPVAGHH FDGDGM
Sbjct: 109 ADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVAGHHLFDGDGM 168

Query: 184 VHAVKFNKGSVSYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFG 243
           VHAV+   GS SY+CRFTETNR VQER+LGRPVFPKAIGELHGH+GIARL+LFY+R LFG
Sbjct: 169 VHAVRIGNGSASYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFG 228

Query: 244 LVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIA 303
           LVD S GTGVANAGLVYFN RLLAMSEDDLPY VR+T  G+L+TVGR+DF GQL S+MIA
Sbjct: 229 LVDASRGTGVANAGLVYFNGRLLAMSEDDLPYQVRITGDGDLETVGRYDFDGQLDSSMIA 288

Query: 304 HPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVV 363
           HPKVDPVTG+LFALSYDVVKKPYLKYFRFSP G KSPDVEIPL++PTMMHDFAITENFVV
Sbjct: 289 HPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHDFAITENFVV 348

Query: 364 VPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAW 423
           +PDQQVVFKL EMIRGGSPV+YDKNK SRFG+L KNATDAS+++W++ PDCFCFHLWNAW
Sbjct: 349 IPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAW 408

Query: 424 EEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLE 483
           EEPE DEVVVIGSCMTP DSIFNE DESL+SVLSEIRLNL+TGESTRRPIIS  EQVNLE
Sbjct: 409 EEPETDEVVVIGSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIISG-EQVNLE 467

Query: 484 AGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRD 543
           AGMVNRNLLGRKTR+AYLA+AEPWPKVSGFAKVDL TG+V K+IYG+ RYGGEP F PR 
Sbjct: 468 AGMVNRNLLGRKTRYAYLAIAEPWPKVSGFAKVDLSTGEVKKYIYGEGRYGGEPFFVPRG 527

Query: 544 PNSENEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLA 603
             SE EDDGYILAFVHDE++ KSELQ+VNA+ LELEATVKLPSRVPYGFHGTFI A+DL 
Sbjct: 528 SGSEAEDDGYILAFVHDEEKGKSELQVVNAVNLELEATVKLPSRVPYGFHGTFISAEDLL 587

Query: 604 KQA 606
           KQA
Sbjct: 588 KQA 590

Length = 590

>gnl\|CDD\|217340 pfam03055, RPE65, Retinal pigment epithelial membrane protein	Back alignment and domain information

>gnl\|CDD\|215271 PLN02491, PLN02491, carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>gnl\|CDD\|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>gnl\|CDD\|215523 PLN02969, PLN02969, 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		606
PLN02258		590	9-cis-epoxycarotenoid dioxygenase NCED	100.0
PLN02491		545	carotenoid 9,10(9',10')-cleavage dioxygenase	100.0
COG3670		490	Lignostilbene-alpha,beta-dioxygenase and related e	100.0
PF03055		486	RPE65: Retinal pigment epithelial membrane protein	100.0
PLN02969		610	9-cis-epoxycarotenoid dioxygenase	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	100.0
KOG1285		582	consensus Beta, beta-carotene 15,15'-dioxygenase a	99.97
PF06433		342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	88.5
PF10282		345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	87.26
COG2706		346	3-carboxymuconate cyclase [Carbohydrate transport	86.1

>PLN02258 9-cis-epoxycarotenoid dioxygenase NCED	Back alignment and domain information

Probab=100.00  E-value=5.7e-148  Score=1237.25  Aligned_cols=554  Identities=79%  Similarity=1.283  Sum_probs=510.6

Q ss_pred             ecCCceeecccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcchhHHHHHHHHHHHHHHhhcc-
Q 007379           36 LKKPTEITCSLQTPSILHFPKQSPKYPPSPAATPPPSSPPLTTKQQPKENDNFAPSKWNFLQKAAALALDAVENALVSQ-  114 (606)
Q Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  114 (606)
                      ..+...++|.+++++++++|+++++.....+      ..+         .....+++||++|++|+++||+||+.++++ 
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (590)
T PLN02258         35 RRRKPSASSLLHTPSILPLPKLSSPSPPSVT------LPP---------AATTQTPQLNPLQRAAAAALDAVESALVSHL   99 (590)
T ss_pred             CCCCcccccccCCCCCCCCCccCCCCCcccc------ccc---------cccCCccccCcchhhHHHHHHHHHHHHhhhc
Confidence            3444558889999999999988654322221      011         111345689999999999999999999998 


Q ss_pred             cccCCCCCCCCCccccccCCccCCCCCCCcccceeecCCCCCceEEEeecCCCCCCCCCCCccccCCCcEEEEEEecCcE
Q 007379          115 ERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKFNKGSV  194 (606)
Q Consensus       115 ~~~~~~~~~~~p~~~l~gnfapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGPnp~~~p~~~~H~FDGDGMvha~~~~~G~v  194 (606)
                      ++.+|+|+++||++|++|||+|++||++..+|+|+|+||+||+|+||||||||+|++..++||||||||||+|+|++|+|
T Consensus       100 ~~~~~~~~~~~~~~~l~g~faPv~ee~~~~~l~V~G~IP~~L~Gty~RNGPnp~f~p~~~~H~FDGDGMvhav~f~dG~a  179 (590)
T PLN02258        100 ERQHPLPKTADPAVQIAGNFAPVPEQPVRHNLPVTGRIPDCIDGVYVRNGANPLFEPVAGHHLFDGDGMVHAVRIGNGSA  179 (590)
T ss_pred             cccCCCCCCCCcceeccCCCcCccccCCcccceEEeeCCCCCCeEEEEeCCCCCCCCCCCCccccCCceEEEEEECCCeE
Confidence            88999999999999999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             EeEeeeecchHHHHHHHcCCCcccccccccCCCchhhHHHHHHhhhccCCCCCCCCCccceeeeeeeCCeEEEEEcCCcc
Q 007379          195 SYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLP  274 (606)
Q Consensus       195 ~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~l~g~~g~ar~~~~~~r~~~g~~~~~~~~~~ANt~vv~~~grLlAl~E~~~P  274 (606)
                      +|+||||||++|++|+++||++|++.+|++++++|++|..++++|..+|.++..+++|+|||+|++|+||||||||+|+|
T Consensus       180 ~y~~RfVrT~~~~~E~~agr~l~~~~~g~~~~~~g~~r~~~~~~r~~~~~~d~~~~~~~ANT~vv~~~grLlAL~E~g~P  259 (590)
T PLN02258        180 SYACRFTETNRLVQERALGRPVFPKAIGELHGHSGIARLMLFYARGLFGLVDASRGTGVANAGLVYFNGRLLAMSEDDLP  259 (590)
T ss_pred             EEEeeeecchhHHHHHhcCCcccccccccccccccccccchhhccccccccccccccCCCceeEEEECCEEEEEEcCCCc
Confidence            99999999999999999999999988999999999999998899988888887778999999999999999999999999


Q ss_pred             EEEEeCCCCCcccccccccCCCCccccccCceecCCCCeEEEEEeeecccCcEEEEEECCCCCccccEEeeCCCcccccc
Q 007379          275 YHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMHD  354 (606)
Q Consensus       275 y~vdi~p~~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p~l~~~~~d~~G~~~~~~~i~l~~p~~~HD  354 (606)
                      |+|+++|++||||+|++||+|+|..+||||||+||.|||||+|+|++.++|+++||++|++|++.+.++|+++.++||||
T Consensus       260 y~l~~d~~~TLeT~G~~df~g~l~~~ftAHPKvDP~TGel~~f~y~~~~~p~l~~~~~d~~G~~~~~~~i~lp~p~~~HD  339 (590)
T PLN02258        260 YQVRITGDGDLETVGRYDFDGQLDSSMIAHPKVDPVTGELFALSYDVVKKPYLKYFRFSPDGEKSPDVEIPLDQPTMMHD  339 (590)
T ss_pred             eEecCCCCCCcccCcccccCCccCcccccCceEcCCCCeEEEEEEeccCCCcEEEEEECCCCCEEeeEEeeCCCCccccc
Confidence            99998886799999999999999889999999999999999999998788999999999999999999999999999999


Q ss_pred             cccCCCeEEEeccCeeechhhhhcCCCceeecCCCceEEEEEECCCCCCCCcEEEeCCCceeeeccccccCCCCCeEEEE
Q 007379          355 FAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVI  434 (606)
Q Consensus       355 FaiTenyvVf~d~p~~~~~~~m~~g~~~~~~d~~~~tr~gVipR~~~d~~~vrw~e~p~~f~fH~~NA~Ee~~~~~vVv~  434 (606)
                      |||||||+||+++|+++++.+|+.|++++.||+++++|||||||++++.+++|||++|+||+||++|||||+++|+||++
T Consensus       340 FaiTenY~Vf~d~Pl~~~~~~~~~g~~~~~~d~~~~srfgVipR~~~~~~~irwfe~p~~f~fH~~NA~Ee~~~~~VVvd  419 (590)
T PLN02258        340 FAITENFVVIPDQQVVFKLSEMIRGGSPVVYDKNKTSRFGVLPKNATDASEIQWVEVPDCFCFHLWNAWEEPETDEVVVI  419 (590)
T ss_pred             eeccCceEEEEccCceEcHHHHhhCCCceEECCCCCcEEEEEECCCCCCCceEEEecCCcEEEecccccccCCCCeEEEE
Confidence            99999999999999999999999999999999999999999999987777899999999999999999998656789999


Q ss_pred             EeecCCCcchhhhchhccccceeeEEEeCCCCCeeeeeecccCCcccccCcccCCccCCCCCceEEEeccCCCCCcCcEE
Q 007379          435 GSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFA  514 (606)
Q Consensus       435 ~~~~~~~~~~~~~~~~~l~~~l~r~rldl~tG~~~~~~l~~~~~~~~~EfP~In~~~~Gr~~Ry~Y~~~~~p~~~~~giv  514 (606)
                      +||+.+.+.++++..+.++++|+||||||+||+++++.+.+ +++.++|||+||++|.||+|||+|+++.+++++++||+
T Consensus       420 ~~~~~~~~~~~~~~~~~~~~~L~r~ridl~tg~~~~~~l~~-~~~~~~EFP~In~~~~Grk~Ry~Y~~~~~~~~~~~giv  498 (590)
T PLN02258        420 GSCMTPPDSIFNESDESLRSVLSEIRLNLRTGESTRRPIIS-GEQVNLEAGMVNRNLLGRKTRYAYLAIAEPWPKVSGFA  498 (590)
T ss_pred             EecccChhhhcccccccccceEEEEEEECCCCceeeeEeec-CCCcccccceECHHHCCCccceEEEeccCCCCCCCeEE
Confidence            99998877777766567889999999999999999888863 11379999999999999999999999888888899999


Q ss_pred             EEeccCCceEEEEcCCCccCCCcEeeeCCCCCC-CCCCcEEEEEEEeCCCCceEEEEEeCCCCCceEEEEcCCcCCCCcc
Q 007379          515 KVDLLTGQVNKFIYGDQRYGGEPLFFPRDPNSE-NEDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPYGFH  593 (606)
Q Consensus       515 K~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~~~-~EDDGyLLs~V~d~~~~~SeL~VlDA~~l~pvArv~LP~rVP~GFH  593 (606)
                      |+|+++|++++|++|+|+|+|||+||||+ ++. +|||||||++|||+++++|+|+||||++|++||||+||+|||||||
T Consensus       499 K~Dl~tg~~~~~~~g~g~~~gEPvFVPr~-~~~~~EDDGylls~V~d~~~~~SeL~IlDA~~l~~VArv~LP~rVP~GFH  577 (590)
T PLN02258        499 KVDLSTGEVKKYIYGEGRYGGEPFFVPRG-SGSEAEDDGYILAFVHDEEKGKSELQVVNAVNLELEATVKLPSRVPYGFH  577 (590)
T ss_pred             EEECCCCcEEEEECCCCccccCCEeccCC-CCCcccCCcEEEEEEEECCCCceEEEEEeCCCCcccEEEECCCCCCCccc
Confidence            99999999999999999999999999997 545 5999999999999999999999999999999999999999999999


Q ss_pred             ccccCchhhhhcC
Q 007379          594 GTFIGAKDLAKQA  606 (606)
Q Consensus       594 G~fv~~~~l~~q~  606 (606)
                      |+|++++||++|+
T Consensus       578 G~wv~~~~l~~q~  590 (590)
T PLN02258        578 GTFISAEDLLKQA  590 (590)
T ss_pred             ccccCHHHHhhcC
Confidence            9999999999995

>PLN02491 carotenoid 9,10(9',10')-cleavage dioxygenase	Back alignment and domain information

>COG3670 Lignostilbene-alpha,beta-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]	Back alignment and domain information

>PF03055 RPE65: Retinal pigment epithelial membrane protein; InterPro: IPR004294 Carotenoids such as beta-carotene, lycopene, lutein and beta-cryptoxanthine are produced in plants and certain bacteria, algae and fungi, where they function as accessory photosynthetic pigments and as scavengers of oxygen radicals for photoprotection	Back alignment and domain information

>PLN02969 9-cis-epoxycarotenoid dioxygenase	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>KOG1285 consensus Beta, beta-carotene 15,15'-dioxygenase and related enzymes [Secondary metabolites biosynthesis, transport and catabolism]	Back alignment and domain information

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1	Back alignment and domain information

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3	Back alignment and domain information

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		606
3npe_A		529	Structure Of Vp14 In Complex With Oxygen Length = 5		0.0
2biw_A		490	Crystal Structure Of Apocarotenoid Cleavage Oxygena		7e-28
3fsn_A		533	Crystal Structure Of Rpe65 At 2.14 Angstrom Resolut		7e-10

>pdb|3NPE|A Chain A, Structure Of Vp14 In Complex With Oxygen Length = 529

Back alignment and structure

Iteration: 1

Score = 743 bits (1918), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/496 (70%), Positives = 405/496 (81%), Gaps = 4/496 (0%) Query: 115 ERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGANPLHEPVAG 174 ER H LP TADP VQIAGNF+PV E+P LP +G++P I GVY RNGANP +PVAG Sbjct: 33 ERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGANPCFDPVAG 92 Query: 175 HHFFDGDGMVHAVKFNKGSV-SYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARL 233 HH FDGDGMVHA++ G+ SY+CRFTET R QER++GRPVFPKAIGELHGH+GIARL Sbjct: 93 HHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARL 152 Query: 234 LLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDF 293 LFY+RA GLVDPS GTGVANAGLVYFN RLLAMSEDDLPYHVRV G+L+TVGR+DF Sbjct: 153 ALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDF 212 Query: 294 SGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLKYFRFSPQGIKSPDVEIPLEEPTMMH 353 GQL MIAHPK+DP TG+L ALSYDV+K+PYLKYF F P G KS DVEIPLE+PTM+H Sbjct: 213 DGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLKYFYFRPDGTKSDDVEIPLEQPTMIH 272 Query: 354 DFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASKMKWIDAPD 413 DFAITEN VVVPD QVVFKL+EM+RGGSPV+ D K SRFG+L K+A DAS+M W+D PD Sbjct: 273 DFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASEMAWVDVPD 332 Query: 414 CFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPI 473 CFCFHLWNAWE+ EVVVIGSCMTPADSIFNE DE L+SVL+EIRL+ +TG STRR + Sbjct: 333 CFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAV 392 Query: 474 ISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRY 533 + +QVNLE GMVNRNLLGR+TR+AYLA+AEPWPKVSGFAKVDL TG++ KF YG+ R+ Sbjct: 393 LPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRF 452 Query: 534 GGEPLFFPRDPNSEN---EDDGYILAFVHDEKEWKSELQIVNAMTLELEATVKLPSRVPY 590 GGEP F P DP + + EDDGY+L FVHDE+ SEL +VNA + LEATV+LPSRVP+ Sbjct: 453 GGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGTSELLVVNAADMRLEATVQLPSRVPF 512 Query: 591 GFHGTFIGAKDLAKQA 606 GFHGTFI ++L QA Sbjct: 513 GFHGTFITGQELEAQA 528

PyMOL of 3npe

>pdb|2BIW|A Chain A, Crystal Structure Of Apocarotenoid Cleavage Oxygenase From Synechocystis, Native Enzyme Length = 490

Back alignment and structure

>pdb|3FSN|A Chain A, Crystal Structure Of Rpe65 At 2.14 Angstrom Resolution Length = 533

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		606
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	0.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	1e-163
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	1e-140
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays} Length = 529	Back alignment and structure

 Score =  588 bits (1517), Expect = 0.0
 Identities = 361/521 (69%), Positives = 418/521 (80%), Gaps = 6/521 (1%)

Query: 92  KWNFLQKAAALALDAVENALVSQ--ERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTT 149
           + N  Q+AAA ALDA E   V+   ER H LP TADP VQIAGNF+PV E+P    LP +
Sbjct: 8   QLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVS 67

Query: 150 GKVPDCIQGVYVRNGANPLHEPVAGHHFFDGDGMVHAVKF-NKGSVSYSCRFTETNRFVQ 208
           G++P  I GVY RNGANP  +PVAGHH FDGDGMVHA++  N  + SY+CRFTET R  Q
Sbjct: 68  GRIPPFIDGVYARNGANPCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQ 127

Query: 209 ERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLVDPSHGTGVANAGLVYFNNRLLAM 268
           ER++GRPVFPKAIGELHGH+GIARL LFY+RA  GLVDPS GTGVANAGLVYFN RLLAM
Sbjct: 128 ERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLVDPSAGTGVANAGLVYFNGRLLAM 187

Query: 269 SEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKPYLK 328
           SEDDLPYHVRV   G+L+TVGR+DF GQL   MIAHPK+DP TG+L ALSYDV+K+PYLK
Sbjct: 188 SEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRPYLK 247

Query: 329 YFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKN 388
           YF F P G KS DVEIPLE+PTM+HDFAITEN VVVPD QVVFKL+EM+RGGSPV+ D  
Sbjct: 248 YFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAA 307

Query: 389 KVSRFGILDKNATDASKMKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNEC 448
           K SRFG+L K+A DAS+M W+D PDCFCFHLWNAWE+    EVVVIGSCMTPADSIFNE 
Sbjct: 308 KTSRFGVLPKHAADASEMAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNES 367

Query: 449 DESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAGMVNRNLLGRKTRFAYLALAEPWP 508
           DE L+SVL+EIRL+ +TG STRR ++   +QVNLE GMVNRNLLGR+TR+AYLA+AEPWP
Sbjct: 368 DERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVGMVNRNLLGRETRYAYLAVAEPWP 427

Query: 509 KVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDP---NSENEDDGYILAFVHDEKEWK 565
           KVSGFAKVDL TG++ KF YG+ R+GGEP F P DP   +   EDDGY+L FVHDE+   
Sbjct: 428 KVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMDPAAAHPRGEDDGYVLTFVHDERAGT 487

Query: 566 SELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLAKQA 606
           SEL +VNA  + LEATV+LPSRVP+GFHGTFI  ++L  QA
Sbjct: 488 SELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA 528

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A* Length = 490	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A Length = 533	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		606
3npe_A		529	9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti;	100.0
2biw_A		490	Apocarotenoid-cleaving oxygenase; non-heme iron, c	100.0
3kvc_A		533	Retinoid isomerohydrolase; 7-bladed beta-propeller	100.0

>3npe_A 9-CIS-epoxycarotenoid dioxygenase 1, chloroplasti; seven blade beta propeller, abscisic acid, non iron, oxidoreductase; 3.20A {Zea mays}	Back alignment and structure

Probab=100.00  E-value=2e-143  Score=1195.60  Aligned_cols=517  Identities=70%  Similarity=1.185  Sum_probs=488.7

Q ss_pred             CCCCcchhHHHHHHHHHHHHHHhhcc--cccCCCCCCCCCccccccCCccCCCCCCCcccceeecCCCCCceEEEeecCC
Q 007379           89 APSKWNFLQKAAALALDAVENALVSQ--ERQHPLPKTADPTVQIAGNFSPVPEKPVCQNLPTTGKVPDCIQGVYVRNGAN  166 (606)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~p~~~l~gnfapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGPn  166 (606)
                      ..++|||+|++|+++||++|+.|+++  +.++|||+++||+++++|||+||+||++..+|+|+|+||+||+|+|||||||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~fapv~ee~~~~~l~V~G~IP~~L~Gt~~RNGpn   84 (529)
T 3npe_A            5 GKKQLNLFQRAAAAALDAFEEGFVANVLERPHGLPSTADPAVQIAGNFAPVGERPPVHELPVSGRIPPFIDGVYARNGAN   84 (529)
T ss_dssp             ---CCCSHHHHHHHHHHHHHHHTCCCCCCTTSCCCTTTCHHHHTSGGGSCCCCEEEEESCCEEECCCTTCEEEEEECCBC
T ss_pred             CcCCCChhHHHHHHHHHHHHHHHHhhhccccCCCCCCCCccchhccCcccccccCCcccceEeecCCccCCceEEEecCC
Confidence            45689999999999999999999997  6789999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCccccCCCcEEEEEEecCcE-EeEeeeecchHHHHHHHcCCCcccccccccCCCchhhHHHHHHhhhccCCC
Q 007379          167 PLHEPVAGHHFFDGDGMVHAVKFNKGSV-SYSCRFTETNRFVQERSLGRPVFPKAIGELHGHTGIARLLLFYSRALFGLV  245 (606)
Q Consensus       167 p~~~p~~~~H~FDGDGMvha~~~~~G~v-~y~~RfV~T~~~~~E~~~Gr~~~~~~~g~l~g~~g~ar~~~~~~r~~~g~~  245 (606)
                      |+|++..++||||||||||+|+|++|+| +|+||||||++|++|+++||++||+++|+++|+++++|..+++.|..+|++
T Consensus        85 P~f~~~~~~HwFDGdGmlh~~~f~~G~a~~y~nRfVrT~~~~~e~~agr~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  164 (529)
T 3npe_A           85 PCFDPVAGHHLFDGDGMVHALRIRNGAAESYACRFTETARLRQERAIGRPVFPKAIGELHGHSGIARLALFYARAACGLV  164 (529)
T ss_dssp             CSSCCSSCCCGGGSCBEEEEEEEETTEEEEEEEEECCCHHHHHHHHHTSCCSCCTTTTTTSSTHHHHHHHHHHHHHTTSC
T ss_pred             cCcCCcCCCccCCCCceEEEEEECCCccceEEEeEecCHHHHHHHHcCCcccccccccccccchhhhhhhhhhhcccccc
Confidence            9998888899999999999999999999 999999999999999999999999999999999999999888888888887


Q ss_pred             CCCCCCccceeeeeeeCCeEEEEEcCCccEEEEeCCCCCcccccccccCCCCccccccCceecCCCCeEEEEEeeecccC
Q 007379          246 DPSHGTGVANAGLVYFNNRLLAMSEDDLPYHVRVTPSGELKTVGRFDFSGQLKSTMIAHPKVDPVTGDLFALSYDVVKKP  325 (606)
Q Consensus       246 ~~~~~~~~ANt~vv~~~grLlAl~E~~~Py~vdi~p~~tLeTlG~~df~g~l~~~~tAHPk~Dp~TGel~~~~y~~~~~p  325 (606)
                      +...++++|||||++|+||||||||+|+||+++|||++||||+|++||+|+|.++||||||+||+||||++|+|++.++|
T Consensus       165 ~~~~~~~~ANtnvv~~~g~llAl~E~g~Py~~~idp~~tLeT~G~~d~~g~l~~~~tAHPk~Dp~TGel~~f~y~~~~~p  244 (529)
T 3npe_A          165 DPSAGTGVANAGLVYFNGRLLAMSEDDLPYHVRVADDGDLETVGRYDFDGQLGCAMIAHPKLDPATGELHALSYDVIKRP  244 (529)
T ss_dssp             CGGGCCCCCCSCEEEETTEEEECCTTSCCEEEEECTTSCEEEEEECCGGGCCCSCCCSCCEECTTTCCEEEEECCSSSSC
T ss_pred             cccccCCCCeEEEEEECCEEEEEEcCCCceEEecCCCCCcceeeeeccCCccCCcccccCcCCCCCCcEEEEEeecCCCC
Confidence            76667899999999999999999999999999999866999999999999999999999999999999999999988889


Q ss_pred             cEEEEEECCCCCccccEEeeCCCcccccccccCCCeEEEeccCeeechhhhhcCCCceeecCCCceEEEEEECCCCCCCC
Q 007379          326 YLKYFRFSPQGIKSPDVEIPLEEPTMMHDFAITENFVVVPDQQVVFKLKEMIRGGSPVIYDKNKVSRFGILDKNATDASK  405 (606)
Q Consensus       326 ~l~~~~~d~~G~~~~~~~i~l~~p~~~HDFaiTenyvVf~d~p~~~~~~~m~~g~~~~~~d~~~~tr~gVipR~~~d~~~  405 (606)
                      +++||+++++|++.+.++|+++.|+|||||||||||+||+++|+++|+.+|+.|++++.|+|++++|||||||++++.+.
T Consensus       245 ~~~~~~~~~~G~~~~~~~i~~~~p~~~HDFaiTenyvVf~~~Pl~~~~~~~~~g~~~~~~~p~~~tr~~VipR~~~~~~~  324 (529)
T 3npe_A          245 YLKYFYFRPDGTKSDDVEIPLEQPTMIHDFAITENLVVVPDHQVVFKLQEMLRGGSPVVLDAAKTSRFGVLPKHAADASE  324 (529)
T ss_dssp             CCEEEEECTTCCBCCCEECCCSSCBCCCCCEECSSEEEEEECSEEECGGGGTTTCCSEEECTTSCCEEEEEETTCSSGGG
T ss_pred             cEEEEEECCCCCEEEEEEEeCCCCceEeeEEecCCeEEEEeCCeEEcHHHHhCCCCceEECCCCCcEEEEEECCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999877778


Q ss_pred             cEEEeCCCceeeeccccccCCCCCeEEEEEeecCCCcchhhhchhccccceeeEEEeCCCCCeeeeeecccCCcccccCc
Q 007379          406 MKWIDAPDCFCFHLWNAWEEPERDEVVVIGSCMTPADSIFNECDESLKSVLSEIRLNLKTGESTRRPIISEDEQVNLEAG  485 (606)
Q Consensus       406 vrw~e~p~~f~fH~~NA~Ee~~~~~vVv~~~~~~~~~~~~~~~~~~l~~~l~r~rldl~tG~~~~~~l~~~~~~~~~EfP  485 (606)
                      ||||++|+||+||++|||||+++|+|||++||+.+.+.+++...+++++.|+|||||+++|+++++.+.++..+.++|||
T Consensus       325 vrw~e~~~~f~fH~~NA~Ee~~~~~ivv~~~~~~~~~~~~~~~~~~~~~~l~r~rl~l~~g~~~~~~l~~~~~~~~~EfP  404 (529)
T 3npe_A          325 MAWVDVPDCFCFHLWNAWEDEATGEVVVIGSCMTPADSIFNESDERLESVLTEIRLDARTGRSTRRAVLPPSQQVNLEVG  404 (529)
T ss_dssp             CEEEECTTCEEEEEEEEEEETTTTEEEEEEEEECCCCCSCCSSSSCCCCEEEEEEECTTTCCEEEEESSCSSSCCCEEEE
T ss_pred             eEEEEcCCEEEEEecccEecCCCCeEEEEEecccCchhhhhccchhhccceEEEEEcCCCCCEEeEEecccccCccccCc
Confidence            99999999999999999998655789999999988888887666778899999999999999999888754445889999


Q ss_pred             ccCCccCCCCCceEEEeccCCCCCcCcEEEEeccCCceEEEEcCCCccCCCcEeeeCCCC----CCCCCCcEEEEEEEeC
Q 007379          486 MVNRNLLGRKTRFAYLALAEPWPKVSGFAKVDLLTGQVNKFIYGDQRYGGEPLFFPRDPN----SENEDDGYILAFVHDE  561 (606)
Q Consensus       486 ~In~~~~Gr~~Ry~Y~~~~~p~~~~~givK~Dl~tg~~~~~~~g~g~~~gEPvFVPr~p~----~~~EDDGyLLs~V~d~  561 (606)
                      +||++|.||+|||+|+++.++++++++|+|+|++||++++|++|+|+|+|||+||||+ +    +++|||||||++|+|+
T Consensus       405 ~In~~~~Gr~~Ry~Y~~~~~~~~~~~~l~K~D~~tg~~~~~~~g~~~~~~EPvFVPrp-~~~~~~~~EDDG~lLs~V~d~  483 (529)
T 3npe_A          405 MVNRNLLGRETRYAYLAVAEPWPKVSGFAKVDLSTGELTKFEYGEGRFGGEPCFVPMD-PAAAHPRGEDDGYVLTFVHDE  483 (529)
T ss_dssp             EECGGGTTSCCSEEEEEECCSTTSCCEEEEEETTTCCEEEEECCTTBCCCCCEEEECC-SCSSSSCCTTCEEEEEEEEBS
T ss_pred             eEChhHcCCccceEEEeccCCCCCcceEEEEecCCCceEEEEcCCCccccCCEeeeCC-CCCCCCCCCCCcEEEEEEEEC
Confidence            9999999999999999998887889999999999999999999999999999999997 6    7899999999999999


Q ss_pred             CCCceEEEEEeCCCCCceEEEEcCCcCCCCccccccCchhhhhcC
Q 007379          562 KEWKSELQIVNAMTLELEATVKLPSRVPYGFHGTFIGAKDLAKQA  606 (606)
Q Consensus       562 ~~~~SeL~VlDA~~l~pvArv~LP~rVP~GFHG~fv~~~~l~~q~  606 (606)
                      ++++|+|+||||++|++||||+||+||||||||+|++++||++|+
T Consensus       484 ~~~~S~LlILDA~~l~~vArv~LP~rvP~GfHG~wv~~~~l~~q~  528 (529)
T 3npe_A          484 RAGTSELLVVNAADMRLEATVQLPSRVPFGFHGTFITGQELEAQA  528 (529)
T ss_dssp             SCCCEEEEEEETTTTEEEEEEEESSCCCCCSCEEEEEHHHHTTCC
T ss_pred             CCCcEEEEEEeCCCCccceEEECCCCCCCCccccccCHHHhhhhh
Confidence            999999999999999999999999999999999999999999995

PyMOL of 3npe

>2biw_A Apocarotenoid-cleaving oxygenase; non-heme iron, carotenoid cleavage, retinal forma oxidoreductase, dioxygenase; HET: 3ON; 2.39A {Synechocystis SP} PDB: 2bix_A*	Back alignment and structure

>3kvc_A Retinoid isomerohydrolase; 7-bladed beta-propeller, monotopic membrane protein, sensory transduction, vision, isomerase, non-heme iron protein; 1.90A {Bos taurus} PDB: 3fsn_A 4f2z_A 4f30_A 4f3a_A 4f3d_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00