Citrus Sinensis ID: 007394
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| P92942 | 780 | Chloride channel protein | yes | no | 1.0 | 0.775 | 0.836 | 0.0 | |
| P92941 | 775 | Chloride channel protein | no | no | 0.986 | 0.770 | 0.835 | 0.0 | |
| P60300 | 765 | Putative chloride channel | no | no | 0.973 | 0.769 | 0.561 | 0.0 | |
| Q96282 | 779 | Chloride channel protein | no | no | 0.961 | 0.747 | 0.541 | 1e-179 | |
| P92943 | 792 | Chloride channel protein | no | no | 0.935 | 0.714 | 0.472 | 1e-129 | |
| Q86AZ6 | 815 | Chloride channel protein | yes | no | 0.940 | 0.698 | 0.346 | 3e-85 | |
| P51799 | 803 | H(+)/Cl(-) exchange trans | yes | no | 0.910 | 0.686 | 0.343 | 9e-80 | |
| O70496 | 803 | H(+)/Cl(-) exchange trans | yes | no | 0.910 | 0.686 | 0.341 | 3e-79 | |
| Q75JF3 | 757 | Chloride channel protein | no | no | 0.928 | 0.742 | 0.320 | 1e-75 | |
| Q4PKH3 | 809 | H(+)/Cl(-) exchange trans | yes | no | 0.919 | 0.687 | 0.337 | 1e-75 |
| >sp|P92942|CLCB_ARATH Chloride channel protein CLC-b OS=Arabidopsis thaliana GN=CLC-B PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/605 (83%), Positives = 552/605 (91%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFGATT+IVKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGG DNHRIKW+WLRYFN
Sbjct: 176 MFGATTMIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNHRIKWRWLRYFN 235
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCGS++GVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLR
Sbjct: 236 NDRDRRDLITCGSAAGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRE 295
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIEIC SGKCGLFG GGLIMFDVS+V YHV DIIPV LIG+IGGILG LYNH+LHKVL
Sbjct: 296 FIEICNSGKCGLFGKGGLIMFDVSHVTYTYHVTDIIPVMLIGVIGGILGSLYNHLLHKVL 355
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
RLYNLIN+KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS E CPTNGRSGNFKQ
Sbjct: 356 RLYNLINEKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRSGNFKQ 415
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
F+CP G+YNDLATLLLTTNDDAVRN+FSSNTP EF S+ IFF+LYCILGL TFGIA P
Sbjct: 416 FHCPKGYYNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATP 475
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVIFLELT
Sbjct: 476 SGLFLPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELT 535
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITMIVLLIAKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR LTVGEL DAK
Sbjct: 536 NNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGELGDAK 595
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL G+EKVS IVDVL+NTTHN FPVLDE VP GLA ATELHGLILRAHLV L
Sbjct: 596 PPVVTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAHLVKVL 655
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KK+WFL EKRRTEEWEVREKF W ELAERE ++VA+TS EMEMY+DLHPLTNTTPYTV
Sbjct: 656 KKRWFLTEKRRTEEWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTV 715
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
+E+MSVAKA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP LE+SK
Sbjct: 716 MENMSVAKALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSK 775
Query: 601 SGQKH 605
G+ H
Sbjct: 776 GGKTH 780
|
Voltage-gated chloride channel. Arabidopsis thaliana (taxid: 3702) |
| >sp|P92941|CLCA_ARATH Chloride channel protein CLC-a OS=Arabidopsis thaliana GN=CLC-A PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/603 (83%), Positives = 550/603 (91%), Gaps = 6/603 (0%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFG TT++VKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKW+WLRYFN
Sbjct: 177 MFGFTTMMVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFN 236
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCGS+SGVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLRA
Sbjct: 237 NDRDRRDLITCGSASGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRA 296
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIEIC SGKCGLFG+GGLIMFDVS+V VRYH DIIPVTLIG+ GGILG LYNH+LHKVL
Sbjct: 297 FIEICNSGKCGLFGSGGLIMFDVSHVEVRYHAADIIPVTLIGVFGGILGSLYNHLLHKVL 356
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
RLYNLINQKGK+HK+LL+L VS+FTSVC + LPFLA+CK CDPS E CPTNGRSGNFKQ
Sbjct: 357 RLYNLINQKGKIHKVLLSLGVSLFTSVCLFGLPFLAECKPCDPSIDEICPTNGRSGNFKQ 416
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCPNG+YNDL+TLLLTTNDDAVRNIFSSNTP EF S+ IFF LYCILGLITFGIA P
Sbjct: 417 FNCPNGYYNDLSTLLLTTNDDAVRNIFSSNTPNEFGMVSLWIFFGLYCILGLITFGIATP 476
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMGSAYGR+LG AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT
Sbjct: 477 SGLFLPIILMGSAYGRMLGTAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 536
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITM VLLIAKTVGDSFN SIYEIIL LKGLPFL+A+PEPWMR LTVGEL DAK
Sbjct: 537 NNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLEANPEPWMRNLTVGELNDAK 596
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL+G+EKV+ IVDVLRNTTHN FPVLD N TELHGLILRAHLV L
Sbjct: 597 PPVVTLNGVEKVANIVDVLRNTTHNAFPVLD------GADQNTGTELHGLILRAHLVKVL 650
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KK+WFL EKRRTEEWEVREKF+ VELAERE ++VA+TS EM++Y+DLHPLTNTTPYTV
Sbjct: 651 KKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLHPLTNTTPYTV 710
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
++SMSVAKA+VLFR VGLRHLLVVPK +A+G+SPV+GILTRQDLRA+NIL AFPHL++ K
Sbjct: 711 VQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPHLDKHK 770
Query: 601 SGQ 603
SG+
Sbjct: 771 SGK 773
|
Voltage-gated chloride channel that could play a role in the regulation of nitrate content. Arabidopsis thaliana (taxid: 3702) |
| >sp|P60300|CLCG_ARATH Putative chloride channel-like protein CLC-g OS=Arabidopsis thaliana GN=CBSCLC6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/604 (56%), Positives = 449/604 (74%), Gaps = 15/604 (2%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
+F TLI+KIIG+I AV+A L +GK GP+VH G+C+AS+LGQGG +R+ W+WLR+F
Sbjct: 161 IFSLRTLIIKIIGNISAVSASLLIGKAGPMVHTGACVASILGQGGSKRYRLTWRWLRFFK 220
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDL+TCG+++G+ A+FRAPVGGVLF+LEE+++WWRSALLWR FFSTAVV +VLRA
Sbjct: 221 NDRDRRDLVTCGAAAGIAASFRAPVGGVLFALEEMSSWWRSALLWRIFFSTAVVAIVLRA 280
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
I++C SGKCGLFG GGLIMFDV + YH+ D++PV L+G++GGILG LYN +L KVL
Sbjct: 281 LIDVCLSGKCGLFGKGGLIMFDVYSENASYHLGDVLPVLLLGVVGGILGSLYNFLLDKVL 340
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
R YN I +KG K+LLA ++S+FTS + LPFLA C+ C E CPT GRSGNFK+
Sbjct: 341 RAYNYIYEKGVTWKILLACAISIFTSCLLFGLPFLASCQPCPVDALEECPTIGRSGNFKK 400
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
+ CP GHYNDLA+L+ TNDDA++N+FS NT EF S+L+FF+ L + ++GI P
Sbjct: 401 YQCPPGHYNDLASLIFNTNDDAIKNLFSKNTDFEFHYFSVLVFFVTCFFLSIFSYGIVAP 460
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
+GLF+P+I+ G++YGR +GM +GS +N++ GL+AVLGAAS + G+MRMTVS CVI LELT
Sbjct: 461 AGLFVPVIVTGASYGRFVGMLLGSNSNLNHGLFAVLGAASFLGGTMRMTVSTCVILLELT 520
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLP+ M+VLLI+KTV D FN +IY +I++LKG P+L +H EP+MR L VG+++
Sbjct: 521 NNLLLLPMMMVVLLISKTVADGFNANIYNLIMKLKGFPYLYSHAEPYMRQLLVGDVVTG- 579
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
P+ +GIEKV IV VL+ T HNGFPV+D PP A V LHGLILRAH++ L
Sbjct: 580 -PLQVFNGIEKVETIVHVLKTTNHNGFPVVDG---PPLAAAPV---LHGLILRAHILTLL 632
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAE----REGKIEEVAVTSEEMEMYIDLHPLTNTT 536
KK+ F+ + +F E A+ R KIE+V ++ EE+ MY+DLHP +N +
Sbjct: 633 KKRVFMPSPVACDS-NTLSQFKAEEFAKKGSGRSDKIEDVELSEEELNMYLDLHPFSNAS 691
Query: 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHL 596
PYTV+E+MS+AKA++LFR+VG+RHLLV+PK + PVVGILTR D +IL P +
Sbjct: 692 PYTVVETMSLAKALILFREVGIRHLLVIPK--TSNRPPVVGILTRHDFMPEHILGLHPSV 749
Query: 597 ERSK 600
RSK
Sbjct: 750 SRSK 753
|
Putative voltage-gated chloride channel. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q96282|CLCC_ARATH Chloride channel protein CLC-c OS=Arabidopsis thaliana GN=CLC-C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 630 bits (1624), Expect = e-179, Method: Compositional matrix adjust.
Identities = 324/598 (54%), Positives = 442/598 (73%), Gaps = 16/598 (2%)
Query: 5 TTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRD 64
+TL VKI GSI VAAG +GKEGP+VH G+CIA+LLGQGG +R+ W+WLR+F NDRD
Sbjct: 190 STLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYRLTWKWLRFFKNDRD 249
Query: 65 RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEI 124
RRDLITCG+++GV AAFRAPVGGVLF+LEE A+WWR+ALLWRTFF+TAVV VVLR+ IE
Sbjct: 250 RRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRNALLWRTFFTTAVVAVVLRSLIEF 309
Query: 125 CTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYN 184
C SG+CGLFG GGLIMFDV++ PV Y D++ + +G+IGG+LG LYN+++ KVLR Y+
Sbjct: 310 CRSGRCGLFGKGGLIMFDVNSGPVLYSTPDLLAIVFLGVIGGVLGSLYNYLVDKVLRTYS 369
Query: 185 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFKQFNC 243
+IN+KG K++L ++VS+ +S C + LP+L+ C C E CP+ GRS +K F C
Sbjct: 370 IINEKGPRFKIMLVMAVSILSSCCAFGLPWLSQCTPCPIGIEEGKCPSVGRSSIYKSFQC 429
Query: 244 PNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 303
P HYNDL++LLL TNDDA+RN+F+S + EF S++ IFF+ LG+IT+GIA+PSGL
Sbjct: 430 PPNHYNDLSSLLLNTNDDAIRNLFTSRSENEFHISTLAIFFVAVYCLGIITYGIAIPSGL 489
Query: 304 FLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL 363
F+P+IL G++YGRL+G +G + +D GL+++LGAAS + G+MRMTVSLCVI LELTNNL
Sbjct: 490 FIPVILAGASYGRLVGRLLGPVSQLDVGLFSLLGAASFLGGTMRMTVSLCVILLELTNNL 549
Query: 364 LLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPV 423
L+LP+ M+VLLI+KTV D FN +Y+ I+ +KGLP+++ H EP+MR L +++ +
Sbjct: 550 LMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYMEDHAEPYMRNLVAKDVVSGA--L 607
Query: 424 ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 483
I+ S +EKV I L+ T HNGFPV+DE PP A+EL G+ LR+HL++ L+ K
Sbjct: 608 ISFSRVEKVGVIWQALKMTRHNGFPVIDE---PP---FTEASELCGIALRSHLLVLLQGK 661
Query: 484 WFLQEKRRTEEWEVR----EKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYT 539
F +++ +R F L + KIE++ ++ EEMEMY+DLHP+TNT+PYT
Sbjct: 662 KFSKQRTTFGSQILRSCKARDFGKAGLG-KGLKIEDLDLSEEEMEMYVDLHPITNTSPYT 720
Query: 540 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLE 597
V+E++S+AKA +LFRQ+GLRHL VVPK G P+VGILTR D ++L +PH++
Sbjct: 721 VLETLSLAKAAILFRQLGLRHLCVVPK--TPGRPPIVGILTRHDFMPEHVLGLYPHID 776
|
Voltage-gated chloride channel. Arabidopsis thaliana (taxid: 3702) |
| >sp|P92943|CLCD_ARATH Chloride channel protein CLC-d OS=Arabidopsis thaliana GN=CLC-D PE=1 SV=2 | Back alignment and function description |
|---|
Score = 462 bits (1188), Expect = e-129, Method: Compositional matrix adjust.
Identities = 280/593 (47%), Positives = 390/593 (65%), Gaps = 27/593 (4%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
TLI KI GSIG+V GL LGKEGPLVH G+CIASLLGQGG + + +W + F +DRDR
Sbjct: 171 TLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWPQLFKSDRDR 230
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
RDL+TCG ++GV AAFRAPVGGVLF+LEEV +WWRS L+WR FF++A+V VV+R + C
Sbjct: 231 RDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWC 290
Query: 126 TSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHI-LHKVLRLYN 184
SG CG FG GG I++DVS+ Y+ +++P+ +IG+IGG+LG L+N + L+ N
Sbjct: 291 KSGICGHFGGGGFIIWDVSDGQDDYYFKELLPMAVIGVIGGLLGALFNQLTLYMTSWRRN 350
Query: 185 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPET---CPT-NGRSGNFKQ 240
+++KG K++ A +S TS + LP L C C S P++ CP G GN+
Sbjct: 351 SLHKKGNRVKIIEACIISCITSAISFGLPLLRKCSPCPESVPDSGIECPRPPGMYGNYVN 410
Query: 241 FNCP-NGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAV 299
F C + YNDLAT+ T DDA+RN+FS+ T EF S+L F ++ L ++TFG AV
Sbjct: 411 FFCKTDNEYNDLATIFFNTQDDAIRNLFSAKTMREFSAQSLLTFLAMFYTLAVVTFGTAV 470
Query: 300 PSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIF 356
P+G F+P I++GS YGRL+GM + + NI++G YA+LGAAS + GSMRMTVSLCVI
Sbjct: 471 PAGQFVPGIMIGSTYGRLVGMFVVRFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIM 530
Query: 357 LELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGEL 416
+E+TNNL LLP+ M+VLLI+K VGD+FN +YE+ LKG+P L++ P+ MR + E
Sbjct: 531 VEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLESRPKYHMRQMIAKEA 590
Query: 417 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHL 476
++ VI+L + +V+ + +L + HNGFPV+D SG T + GL+LR+HL
Sbjct: 591 CQSQ-KVISLPRVIRVADVASILGSNKHNGFPVIDH---TRSG----ETLVIGLVLRSHL 642
Query: 477 VLALKKKWFLQEKRRTEEWEVRE-KFSWVELAEREGK----IEEVAVTSEEMEMYIDLHP 531
++ L+ K Q + R + S+ E A+ IE++ +TS+++EMYIDL P
Sbjct: 643 LVLLQSKVDFQHSPLPCDPSARNIRHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAP 702
Query: 532 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
N +PY V E MS+ K LFRQ+GLRHL VVP+ S V+G++TR+DL
Sbjct: 703 FLNPSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPR-----PSRVIGLITRKDL 750
|
Voltage-gated chloride channel. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q86AZ6|CLCB_DICDI Chloride channel protein B OS=Dictyostelium discoideum GN=clcB PE=3 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (809), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 221/637 (34%), Positives = 347/637 (54%), Gaps = 68/637 (10%)
Query: 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNN 61
F T++ K++ I + ++GL LG EGP+ HIG+ I S + Q + + F N
Sbjct: 192 FNLKTVLGKLVSLIFSFSSGLVLGPEGPMFHIGAGIGSSMSQFKSKTLKFHLKSFWIFQN 251
Query: 62 DRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAF 121
D D+RD I+CG+++G+ AAF AP+GGVLF LEE +++W L WRTFFS + + F
Sbjct: 252 DSDKRDFISCGAAAGIAAAFGAPIGGVLFCLEEGSSFWSRQLTWRTFFSCLIATMTANLF 311
Query: 122 IEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLR 181
++ G G++ F VS + Y ++IP ++GIIGG+LG ++ H+ +V
Sbjct: 312 LQ----GFTQQIHDYGVLTFGVSKSYL-YTYTELIPFMIMGIIGGLLGAIFVHVNVRVNH 366
Query: 182 LYN-LINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCK---ACDPSFPETC-PTNGRSG 236
L K K++K++ + + +SV + LADC+ P TC P + +
Sbjct: 367 WRKKLFANKSKLYKMIEVCVIVILSSVVCFFPALLADCRPISGISGLTPGTCDPGDDSTL 426
Query: 237 NFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFG 296
QFNC G+YN +ATL LTT +++++ +FS +T F ++L F I Y +L +IT G
Sbjct: 427 ILNQFNCAEGYYNPMATLTLTTLENSLQIVFSRSTNI-FTAQTLLTFSIFYYVLTIITSG 485
Query: 297 IAVPSGLFLPIILMGSAYGRLLGMAMGSY-TNIDQGLYAVLGAASLMAGSMRMTVSLCVI 355
+ V SG+F+P++L+GS++GRL+G+ + Y T+ID +YA++GAAS+MAGS+RMT+SL VI
Sbjct: 486 LYVASGIFIPMMLIGSSWGRLIGIFLSKYFTSIDPSIYALIGAASMMAGSLRMTISLVVI 545
Query: 356 FLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGE 415
+ELT L ++ +++ K GD FN SIYE ++ELK +P+L++ P +R TV E
Sbjct: 546 IVELTETTQYLLPVILSVMVGKWCGDIFNESIYEHLIELKHIPYLNSQPPNHLRKKTVAE 605
Query: 416 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELH------- 468
+ V TL I KV + +L HNGFPV+ + + N + +L
Sbjct: 606 AMSTD--VKTLPEIVKVKTALTILETCPHNGFPVVMLPQLHSNSNLNDSNQLSLSLNLNN 663
Query: 469 -----------------------------GLILRAHLVLALKKKWFLQEKRRTEEWEVRE 499
GLILR+ L + L++K F + + +
Sbjct: 664 NNNNNNNNNNNNNNNNNNNNNNNNNNILCGLILRSQLSVLLRRKIFNSPEDLKNIDFISD 723
Query: 500 K----------FSWVELAEREGKIEEVA--VTSEEMEMYIDLHPLTNTTPYTVIESMSVA 547
K FS ELA + I E++ +T E+++MYIDL P N ++ S++
Sbjct: 724 KGYNLPIDHTEFSQ-ELASKIPPIHELSKLITKEDLDMYIDLRPYMNFAVVSIKNYSSLS 782
Query: 548 KAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+A +FRQVGLRH++V + VVG+LTR+DL
Sbjct: 783 EAYQIFRQVGLRHMVV-----INVFNNVVGMLTRKDL 814
|
Voltage-gated chloride channel. Chloride channels may have several functions including the regulation of cell volume, membrane potential stabilization and signal transduction. Dictyostelium discoideum (taxid: 44689) |
| >sp|P51799|CLCN7_RAT H(+)/Cl(-) exchange transporter 7 OS=Rattus norvegicus GN=Clcn7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (763), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 206/600 (34%), Positives = 335/600 (55%), Gaps = 49/600 (8%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
TL++K+ G I +V GL +GKEGP++H GS IA+ + QG + + ++ YF D ++
Sbjct: 224 TLVIKVSGVILSVVGGLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEK 283
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
RD ++ G+++GV AAF APVGGVLFSLEE A++W L WR FF++ + L F+
Sbjct: 284 RDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLN-FVLSI 342
Query: 126 TSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL-IGIIGGILGGLYNHILHKVLRLYN 184
G + GLI F + + + IPV + +G++GGILG ++N L+ L ++
Sbjct: 343 YHGNMWDLSSPGLINFGRFDSEKMAYTIHEIPVFIAMGVVGGILGAVFN-ALNYWLTMFR 401
Query: 185 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFK-QFN 242
+ +++ A+ V+ T+ + L + + DC+ P G S ++ Q
Sbjct: 402 IRYIHRPCLQVIEAMLVAAVTATVAFVLIYSSRDCQ----------PLQGSSMSYPLQLF 451
Query: 243 CPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 302
C +G YN +A T + +V ++F + P + P ++ +F ++Y L T+G+ V +G
Sbjct: 452 CADGEYNSMAAAFFNTPEKSVVSLF-HDPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAG 510
Query: 303 LFLPIILMGSAYGRLLGMAMGSYTN----IDQGLYAVLGAASLMAGSMRMTVSLCVIFLE 358
+F+P +L+G+A+GRL G++M T D G YA++GAA+ + G +RMT+SL VI +E
Sbjct: 511 VFIPSLLIGAAWGRLFGISMSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMME 570
Query: 359 LTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELID 418
T+N+ M+VL+ AK VGD F +Y++ ++L+ +PFL +LT E++
Sbjct: 571 ATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMS 630
Query: 419 AKPPVITLSGIEKVSQIVDVLRNT--THNGFPVLDE-GVVPPSGLANVATELHGLILRAH 475
PV L EKV IVDVL +T HNGFPV+++ G P+ L GLILR+
Sbjct: 631 T--PVTCLRRREKVGIIVDVLSDTASNHNGFPVVEDVGDTQPA-------RLQGLILRSQ 681
Query: 476 LVLALKKKWFLQE------KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDL 529
L++ LK K F++ +RR + R+ + R I+ + V+ +E E +DL
Sbjct: 682 LIVLLKHKVFVERSNMGLVQRRLRLKDFRDAYP------RFPPIQSIHVSQDERECTMDL 735
Query: 530 HPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589
N +PYTV + S+ + LFR +GLRHL+VV + + VVG++TR+DL + +
Sbjct: 736 SEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNH-----NQVVGLVTRKDLARYRL 790
|
Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen. Rattus norvegicus (taxid: 10116) |
| >sp|O70496|CLCN7_MOUSE H(+)/Cl(-) exchange transporter 7 OS=Mus musculus GN=Clcn7 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (758), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 205/600 (34%), Positives = 335/600 (55%), Gaps = 49/600 (8%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
TL++K+ G I +V GL +GKEGP++H GS IA+ + QG + + ++ YF D ++
Sbjct: 224 TLVIKVSGVILSVVGGLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEK 283
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
RD ++ G+++GV AAF APVGGVLFSLEE A++W L WR FF++ + L F+
Sbjct: 284 RDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLN-FVLSI 342
Query: 126 TSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL-IGIIGGILGGLYNHILHKVLRLYN 184
G + GLI F + + + IPV + +G++GGILG ++N L+ L ++
Sbjct: 343 YHGNMWDLSSPGLINFGRFDSEKMAYTIHEIPVFIAMGVVGGILGAVFN-ALNYWLTMFR 401
Query: 185 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFK-QFN 242
+ +++ A+ V+ T+ + L + + DC+ P G S ++ Q
Sbjct: 402 IRYIHRPCLQVIEAMLVAAVTATVAFVLIYSSRDCQ----------PLQGSSMSYPLQLF 451
Query: 243 CPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 302
C +G YN +A T + +V ++F + P + P ++ +F ++Y L T+G+ V +G
Sbjct: 452 CADGEYNSMAAAFFNTPEKSVVSLF-HDPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAG 510
Query: 303 LFLPIILMGSAYGRLLGMAMGSYTN----IDQGLYAVLGAASLMAGSMRMTVSLCVIFLE 358
+F+P +L+G+A+GRL G+++ T D G YA++GAA+ + G +RMT+SL VI +E
Sbjct: 511 VFIPSLLIGAAWGRLFGISLSYLTGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMME 570
Query: 359 LTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELID 418
T+N+ M+VL+ AK VGD F +Y++ ++L+ +PFL +LT E++
Sbjct: 571 ATSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMS 630
Query: 419 AKPPVITLSGIEKVSQIVDVLRNT--THNGFPVLDE-GVVPPSGLANVATELHGLILRAH 475
PV L EKV IVDVL +T HNGFPV+++ G P+ L GLILR+
Sbjct: 631 T--PVTCLRRREKVGIIVDVLSDTASNHNGFPVVEDVGDTQPA-------RLQGLILRSQ 681
Query: 476 LVLALKKKWFLQE------KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDL 529
L++ LK K F++ +RR + R+ + R I+ + V+ +E E +DL
Sbjct: 682 LIVLLKHKVFVERSNMGLVQRRLRLKDFRDAYP------RFPPIQSIHVSQDERECTMDL 735
Query: 530 HPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589
N +PYTV + S+ + LFR +GLRHL+VV + + VVG++TR+DL + +
Sbjct: 736 SEFMNPSPYTVPQEASLPRVFKLFRALGLRHLVVVDNH-----NQVVGLVTRKDLARYRL 790
|
Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen. Mus musculus (taxid: 10090) |
| >sp|Q75JF3|CLCC_DICDI Chloride channel protein C OS=Dictyostelium discoideum GN=clcC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 189/589 (32%), Positives = 309/589 (52%), Gaps = 27/589 (4%)
Query: 3 GATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNND 62
G L+ KI+ + + ++GL +G EGP++HIGS + + + Q + ND
Sbjct: 188 GFRALLGKIVSLVLSFSSGLFVGPEGPMIHIGSAVGAAISQFKSSTMGFYPSLFLSYRND 247
Query: 63 RDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFI 122
RD+RD I+ G+++G+ AAF AP+GGVLFS+EEV+++W L WRTFF T V+ F+
Sbjct: 248 RDKRDFISIGAATGLAAAFGAPIGGVLFSIEEVSSFWSRQLTWRTFF-TCVIAAFTTNFL 306
Query: 123 EICTSGKCGLFGTGGLIMFDVSNVPV-RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLR 181
+ TG L+ F S + + RY + + ++ +I R
Sbjct: 307 LQGIGSSPDMHDTG-LLTFGFSRLYLFRYSELLCFCFLGLIGGLLGAFFVFLNIHLNKWR 365
Query: 182 LYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSG-NFKQ 240
L ++ +L AL VSV TSV Y F+ DC+ ET +S Q
Sbjct: 366 KEKL--KQNPYLRLFEALFVSVVTSVVCYYASFIFDCRYQSNIVIETSVCEDQSNTEMVQ 423
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
F CP+G Y++L +LL D A+R ++S T F +L+F ++ + + G+ V
Sbjct: 424 FFCPDGMYSELGSLLFGNPDQALRRLYS-RTNNMFTLPPLLVFTLISLFFSIWSSGLWVA 482
Query: 301 SGLFLPIILMGSAYGRLLGMAMGS-YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL 359
GLF+P++++G+ +GRL G + +TNID +YA++G+A++MAG RMTV + VI +EL
Sbjct: 483 GGLFVPMMMVGAGFGRLFGQTISMWFTNIDSSIYALVGSAAMMAGYCRMTVCIVVIMVEL 542
Query: 360 TNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDA 419
T L ++ ++I+K VGD FN S+YE ++E K +PFL + P + + +++
Sbjct: 543 TEGTQYLVPIILAVMISKWVGDFFNESVYEHLMEQKSIPFLQSKPPHSTNNIRISDVMSK 602
Query: 420 KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479
V+ L + +V +V++L + HN FPV++ G L G+ILR H+++
Sbjct: 603 N--VVVLPEVCQVRLLVNILNSNNHNAFPVINSGPYDNQRL------YRGIILRDHILVL 654
Query: 480 LKKKWFLQEKRRTEEWEVREKFSWVELAEREGK----IEEVAVTSEEMEMYIDLHPLTNT 535
L + F + EE + E F + + K + E+ E++ +IDL P N+
Sbjct: 655 LFYRVFY--RGTGEEIYLDENFDFDKFTTETSKSPPPLSEMNFDQFELDSFIDLRPYMNS 712
Query: 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ T+ + S +A LFR +GLRHL V+ + VVG++TR DL
Sbjct: 713 SGVTIHNTFSFVEAYKLFRNMGLRHLPVIDIN-----NEVVGMVTRNDL 756
|
Voltage-gated chloride channel. Chloride channels may have several functions including the regulation of cell volume, membrane potential stabilization and signal transduction. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q4PKH3|CLCN7_BOVIN H(+)/Cl(-) exchange transporter 7 OS=Bos taurus GN=CLCN7 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 284 bits (727), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 201/595 (33%), Positives = 329/595 (55%), Gaps = 39/595 (6%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
TL++K+ G I +V GL +GKEGP++H GS IA+ + QG + + ++ YF D ++
Sbjct: 230 TLVIKVSGVILSVVGGLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEK 289
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
RD ++ G+++GV AAF APVGGVLFSLEE A++W L WR FF++ + L F+
Sbjct: 290 RDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLN-FVLSI 348
Query: 126 TSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL-IGIIGGILGGLYNHILHKVLRLYN 184
G + GLI F + +V+ IP+ + +G++GGILG ++N L+ L ++
Sbjct: 349 YHGNAWDLSSPGLINFGRFDTETMVYVIHEIPIFIAMGVVGGILGAVFN-ALNYWLTMFR 407
Query: 185 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFK-QFN 242
+ +++ A V+ T+ + L + + DC+ P G S ++ Q
Sbjct: 408 IRYVHRPCLQVVEATLVAAVTATAAFVLIYSSRDCQ----------PLRGSSVSYPLQLF 457
Query: 243 CPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 302
C +G YN +A T + +V ++F + P + P ++ +F ++Y L T+G+ V +G
Sbjct: 458 CADGEYNSMAVAFFNTPEKSVVSLF-HDPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAG 516
Query: 303 LFLPIILMGSAYGRLLGMAM----GSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE 358
+F+P +L+G+A+GRL G+++ G+ D G YA++GAA+ + G +RMT+SL VI +E
Sbjct: 517 VFIPSLLIGAAWGRLFGISLSYITGAAVWADPGKYALMGAAAQLGGIVRMTLSLTVIMME 576
Query: 359 LTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELID 418
T+++ M+VL+ AK VGD F +Y++ ++L+ +PFL +LT E++
Sbjct: 577 ATSSVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMS 636
Query: 419 AKPPVITLSGIEKVSQIVDVLRNT--THNGFPVLD--EGVVPPSGLANVATELHGLILRA 474
PV L EKV IVDVL +T HNGFPV++ +G P L GLILR+
Sbjct: 637 T--PVTCLRRREKVGVIVDVLSSTASNHNGFPVVEDADGTQP--------ARLQGLILRS 686
Query: 475 HLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN 534
L++ LK K F++ + + R I+ + V+ +E E +DL N
Sbjct: 687 QLIVLLKHKVFVERSSMGLLRRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEFMN 746
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589
+PYTV + S+ + LFR +GLRHL+VV + VVG++TR+DL + +
Sbjct: 747 PSPYTVPQEASLPRVFKLFRALGLRHLVVVDN-----CNQVVGLVTRKDLARYRL 796
|
Mediates the exchange of chloride ions against protons. Functions as antiporter and contributes to the acidification of the lysosome lumen. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| 255536929 | 787 | chloride channel clc, putative [Ricinus | 1.0 | 0.768 | 0.871 | 0.0 | |
| 359488503 | 789 | PREDICTED: chloride channel protein CLC- | 0.998 | 0.765 | 0.857 | 0.0 | |
| 301318134 | 789 | chloride channel ClC4 [Vitis vinifera] | 0.998 | 0.765 | 0.855 | 0.0 | |
| 351722961 | 783 | chloride channel [Glycine max] gi|662201 | 0.991 | 0.766 | 0.835 | 0.0 | |
| 224060241 | 785 | Cl-channel clc-7 [Populus trichocarpa] g | 0.998 | 0.769 | 0.854 | 0.0 | |
| 15232105 | 780 | chloride channel protein CLC-b [Arabidop | 1.0 | 0.775 | 0.836 | 0.0 | |
| 356571521 | 790 | PREDICTED: chloride channel protein CLC- | 1.0 | 0.765 | 0.855 | 0.0 | |
| 297814954 | 779 | CLC-B [Arabidopsis lyrata subsp. lyrata] | 1.0 | 0.776 | 0.833 | 0.0 | |
| 15237514 | 775 | chloride channel protein CLC-a [Arabidop | 0.986 | 0.770 | 0.835 | 0.0 | |
| 79329458 | 643 | chloride channel protein CLC-a [Arabidop | 0.986 | 0.928 | 0.835 | 0.0 |
| >gi|255536929|ref|XP_002509531.1| chloride channel clc, putative [Ricinus communis] gi|223549430|gb|EEF50918.1| chloride channel clc, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1052 bits (2721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 527/605 (87%), Positives = 571/605 (94%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFGATTLIVKI GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHR+KW+WLRYFN
Sbjct: 182 MFGATTLIVKIFGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRLKWRWLRYFN 241
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRD+ITCGSSSGVCAAFRAPVGGVLF+LEEVATWWRSALLWRTFFSTAVVVV+LRA
Sbjct: 242 NDRDRRDIITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVILRA 301
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIEIC SGKCGLFG GGLIMFDVS+V V YHVMDI+PV +IGIIGG+LG LYN++LHKVL
Sbjct: 302 FIEICKSGKCGLFGKGGLIMFDVSDVTVSYHVMDILPVIIIGIIGGLLGSLYNYLLHKVL 361
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
RLYNLINQKGKMHKLLL+L+VS+FTSVC Y LPFLA C+ CDPS E CPTN RSGNFKQ
Sbjct: 362 RLYNLINQKGKMHKLLLSLTVSLFTSVCLYGLPFLAKCQPCDPSVTELCPTNDRSGNFKQ 421
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCP GHYNDLATLLLTTNDDAVRNIFSSNTP EFQP+++LIFF LYC+LGL TFGIAVP
Sbjct: 422 FNCPKGHYNDLATLLLTTNDDAVRNIFSSNTPHEFQPATLLIFFALYCVLGLFTFGIAVP 481
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMGSAYGRLLG+AMGSYTN+DQGLYAVLGAASLMAGSMRMTVSLCVIFLELT
Sbjct: 482 SGLFLPIILMGSAYGRLLGVAMGSYTNLDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 541
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITMIVLLIAKTVGDSFNPSIYEIIL LKGLPFLDA+PEPWMR LTVGEL DAK
Sbjct: 542 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFLDANPEPWMRNLTVGELADAK 601
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PP++TL G+EKVS+IVDVL+NTT+NGFPV+D+GV+PP GLA ATELHGLILRAHLV A+
Sbjct: 602 PPLVTLCGVEKVSRIVDVLKNTTYNGFPVVDDGVIPPVGLATGATELHGLILRAHLVQAI 661
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KKKWFL+EKRRTEEWEVR+KF+WV+LAERE KIEEVAVT +EMEMY+DLHPLTNTTPYTV
Sbjct: 662 KKKWFLREKRRTEEWEVRQKFTWVDLAERELKIEEVAVTRDEMEMYVDLHPLTNTTPYTV 721
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
+ESMSVAKAMVLFRQVGLRHLL+VPKYEA+GV PVVGILTRQDLRA+NIL+AFPHL RSK
Sbjct: 722 VESMSVAKAMVLFRQVGLRHLLIVPKYEASGVPPVVGILTRQDLRAYNILSAFPHLARSK 781
Query: 601 SGQKH 605
+K
Sbjct: 782 DREKR 786
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359488503|ref|XP_002273594.2| PREDICTED: chloride channel protein CLC-b [Vitis vinifera] gi|296082356|emb|CBI21361.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1050 bits (2714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 518/604 (85%), Positives = 563/604 (93%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFGA+TLIVKI GSIGAV+AGLDLGKEGPLVHIGSCIASLLGQGGP+N+RIKW+WLRYFN
Sbjct: 184 MFGASTLIVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPENYRIKWRWLRYFN 243
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCG+SSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVV VVLRA
Sbjct: 244 NDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRA 303
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIE C SGKCGLFG GGLIMFDVS+V V YH MDI PV LIG+IGG+LG LYNH+LHKVL
Sbjct: 304 FIEYCNSGKCGLFGRGGLIMFDVSDVTVTYHAMDIAPVALIGLIGGVLGSLYNHLLHKVL 363
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
R+YNLINQKGK+HKLLL+LSVS+FTS+C YCLPFLA C CD S ETCPTNGR+GNFKQ
Sbjct: 364 RVYNLINQKGKIHKLLLSLSVSLFTSICLYCLPFLATCSPCDSSITETCPTNGRTGNFKQ 423
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCP+G+YNDLA+LL TTNDDAVRNIFS+NT TEF P S+LIFF LY ILGLITFGIAVP
Sbjct: 424 FNCPDGYYNDLASLLFTTNDDAVRNIFSTNTATEFHPLSLLIFFGLYYILGLITFGIAVP 483
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMGSAYGRLLG+AMGSYT IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT
Sbjct: 484 SGLFLPIILMGSAYGRLLGIAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 543
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITMIVLLIAK+VGD NPSIY+IIL LKGLPFLDA+PEPWMR LTVGEL DAK
Sbjct: 544 NNLLLLPITMIVLLIAKSVGDCINPSIYDIILHLKGLPFLDANPEPWMRNLTVGELADAK 603
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL G+EKV++IVDVLRNTTHNGFPV+DEGVVP GLA ATELHG++LRAHLV L
Sbjct: 604 PPVVTLRGVEKVARIVDVLRNTTHNGFPVVDEGVVPRVGLAIGATELHGIVLRAHLVKVL 663
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KKKWFLQE+RRTEEWEVREKF+W+ELAEREGK EEVAVT++EMEMY+DLHPLTNTTPYTV
Sbjct: 664 KKKWFLQERRRTEEWEVREKFTWIELAEREGKFEEVAVTNDEMEMYVDLHPLTNTTPYTV 723
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
+ESMSVAKAMVLFRQVGLRH+L+VPKY+AAGVSPVVGILTRQDLRA+NILTAFPHL +SK
Sbjct: 724 VESMSVAKAMVLFRQVGLRHMLIVPKYQAAGVSPVVGILTRQDLRAYNILTAFPHLAKSK 783
Query: 601 SGQK 604
+K
Sbjct: 784 EREK 787
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|301318134|gb|ADK66982.1| chloride channel ClC4 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1046 bits (2706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 517/604 (85%), Positives = 562/604 (93%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFGA+TLIVKI GSIGAV+AGLDLGKEGPLVHIGSCIASLLGQGGP+N+RIKW+WLRYFN
Sbjct: 184 MFGASTLIVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPENYRIKWRWLRYFN 243
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCG+SSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVV VVLRA
Sbjct: 244 NDRDRRDLITCGASSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVAVVLRA 303
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIE C SGKCGLFG GGLIMFDVS+V V YH MDI PV LIG+IGG+LG LYNH+LHKVL
Sbjct: 304 FIEYCNSGKCGLFGRGGLIMFDVSDVTVTYHAMDIAPVALIGLIGGVLGSLYNHLLHKVL 363
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
R+YNLINQKGK+HKLLL+LSVS+FTS+C YCLPFLA C CD S ETCPTNGR+GNFKQ
Sbjct: 364 RVYNLINQKGKIHKLLLSLSVSLFTSICLYCLPFLATCSPCDSSITETCPTNGRTGNFKQ 423
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCP+G+YNDLA+LL TTNDDAVRNIFS+NT TEF P S+LIFF LY ILGLITFGIAVP
Sbjct: 424 FNCPDGYYNDLASLLFTTNDDAVRNIFSTNTATEFHPLSLLIFFGLYYILGLITFGIAVP 483
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMGSAYGRLLG+AMGSYT IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT
Sbjct: 484 SGLFLPIILMGSAYGRLLGIAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 543
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITMIVLLIAK+VGD NPSIY+IIL LKGLPFLDA+PEPWMR LTVGEL DAK
Sbjct: 544 NNLLLLPITMIVLLIAKSVGDCINPSIYDIILHLKGLPFLDANPEPWMRNLTVGELADAK 603
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
P V+TL G+EKV++IVDVLRNTTHNGFPV+DEGVVP GLA ATELHG++LRAHLV L
Sbjct: 604 PQVVTLRGVEKVARIVDVLRNTTHNGFPVVDEGVVPRVGLAIGATELHGIVLRAHLVKVL 663
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KKKWFLQE+RRTEEWEVREKF+W+ELAEREGK EEVAVT++EMEMY+DLHPLTNTTPYTV
Sbjct: 664 KKKWFLQERRRTEEWEVREKFTWIELAEREGKFEEVAVTNDEMEMYVDLHPLTNTTPYTV 723
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
+ESMSVAKAMVLFRQVGLRH+L+VPKY+AAGVSPVVGILTRQDLRA+NILTAFPHL +SK
Sbjct: 724 VESMSVAKAMVLFRQVGLRHMLIVPKYQAAGVSPVVGILTRQDLRAYNILTAFPHLAKSK 783
Query: 601 SGQK 604
+K
Sbjct: 784 EREK 787
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351722961|ref|NP_001236494.1| chloride channel [Glycine max] gi|66220164|gb|AAY43007.1| chloride channel [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1042 bits (2694), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/600 (83%), Positives = 559/600 (93%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
M+GATTL VKIIGSIGAV+AGLDLGKEGPLVHIGSCIASLLGQGGPDN+RIKW+WLRYFN
Sbjct: 182 MYGATTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFN 241
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCG+SSGVCAAFRAPVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLRA
Sbjct: 242 NDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRA 301
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
IE+C GKCGLFG GGLIM+DVS+V VRY+VMDIIPV +IG++GG+LG LYN++LHKVL
Sbjct: 302 SIELCHKGKCGLFGEGGLIMYDVSDVTVRYNVMDIIPVVIIGVLGGVLGSLYNYLLHKVL 361
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
R+YNLINQKGKM+KLLL+LSV++FTS CQY LPFLA C CDPS + CPTNGRSGNFKQ
Sbjct: 362 RVYNLINQKGKMYKLLLSLSVAIFTSACQYGLPFLAKCTPCDPSLSDVCPTNGRSGNFKQ 421
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCP G+YNDLATLLLTTNDDAVRNIFS+NTP E+QPSSI+IFF LYCILGLITFGIAVP
Sbjct: 422 FNCPKGYYNDLATLLLTTNDDAVRNIFSTNTPLEYQPSSIIIFFALYCILGLITFGIAVP 481
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMGS YGRLLG+ MG +TNIDQGL+AVLGAASLMAGSMRMTVSLCVIFLELT
Sbjct: 482 SGLFLPIILMGSGYGRLLGILMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLELT 541
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITMIVLLIAKTVGDSFNPSIYEIIL LKGLPF+DA+PEPWMR LTVGEL+D K
Sbjct: 542 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDVK 601
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
P V++ G+EKV+ IV+ L+NTTHNGFPV+D G+VP +G+AN ATELHG+ILRAHL+
Sbjct: 602 PAVVSFKGVEKVANIVNALKNTTHNGFPVMDCGLVPTTGVANEATELHGIILRAHLIQVR 661
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KKKWFL+E+RRTEEWEVREKF+WVELAEREG IE+VAVT EEMEM++DLHPLTNTTP+TV
Sbjct: 662 KKKWFLKERRRTEEWEVREKFTWVELAEREGNIEDVAVTKEEMEMFVDLHPLTNTTPFTV 721
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
+ESMSVAKAMVLFRQVGLRH+LVVPKY+A+GVSPV+GILTRQDL A+NILT FPHL +SK
Sbjct: 722 LESMSVAKAMVLFRQVGLRHMLVVPKYQASGVSPVIGILTRQDLLAYNILTVFPHLAKSK 781
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224060241|ref|XP_002300101.1| Cl-channel clc-7 [Populus trichocarpa] gi|222847359|gb|EEE84906.1| Cl-channel clc-7 [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1035 bits (2677), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 516/604 (85%), Positives = 560/604 (92%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFG TTLIVKI GSIGAV+AGLDLGKEGPLVHIGSCIASLLGQGGPDN+R+KW+WLRYFN
Sbjct: 180 MFGVTTLIVKIFGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRLKWRWLRYFN 239
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRD+ITCG+SSGVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVV+LR
Sbjct: 240 NDRDRRDIITCGASSGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVILRT 299
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIEIC SGKCGLFG GGLIMFDVS+V V YHVMD+IP+T+IGI+GGILG LYN++LHKVL
Sbjct: 300 FIEICNSGKCGLFGKGGLIMFDVSDVVVTYHVMDVIPITIIGILGGILGSLYNYLLHKVL 359
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
+YNLINQKG++HKLLLAL+VS+FTSVC Y LPFLA C+ CDPS E CPTN RSGNFKQ
Sbjct: 360 VVYNLINQKGRIHKLLLALTVSIFTSVCLYGLPFLAKCQPCDPSVQEICPTNSRSGNFKQ 419
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCP+GHYNDLATLL TTNDDAVRNIFSSN EFQP+S+LIFF+LYCILGL TFGIAVP
Sbjct: 420 FNCPDGHYNDLATLLFTTNDDAVRNIFSSNALKEFQPASLLIFFVLYCILGLFTFGIAVP 479
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMGSAYGRLLG+AMGSYT IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT
Sbjct: 480 SGLFLPIILMGSAYGRLLGIAMGSYTKIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 539
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITMIVLLI+KTVGDSFNPSIYEIIL+LKGLPFLDA+PEPWMR LTV EL DAK
Sbjct: 540 NNLLLLPITMIVLLISKTVGDSFNPSIYEIILDLKGLPFLDANPEPWMRNLTVAELADAK 599
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL G+EKVS+IV+VL NTTHNGFPV+DEGVVP GLA ATELHGLILRAHLV L
Sbjct: 600 PPVVTLCGVEKVSRIVEVLENTTHNGFPVVDEGVVPLMGLATGATELHGLILRAHLVQVL 659
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KKKWFL EKRRTEEWEVREKF WVELAER+G IEEVAVT EMEMY+DLHPLTNTTPYTV
Sbjct: 660 KKKWFLPEKRRTEEWEVREKFDWVELAERDGTIEEVAVTRNEMEMYVDLHPLTNTTPYTV 719
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
+ESMSVAKAMVLFRQVGLRH+L++PKY+AAGV PVVGILTRQDLRA NIL AFPHL+ SK
Sbjct: 720 VESMSVAKAMVLFRQVGLRHMLILPKYQAAGVPPVVGILTRQDLRAHNILLAFPHLQGSK 779
Query: 601 SGQK 604
S +K
Sbjct: 780 SREK 783
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232105|ref|NP_189353.1| chloride channel protein CLC-b [Arabidopsis thaliana] gi|41688457|sp|P92942.1|CLCB_ARATH RecName: Full=Chloride channel protein CLC-b; Short=AtCLC-b; AltName: Full=CBS domain-containing protein CBSCLC7 gi|1742955|emb|CAA96058.1| CLC-b chloride channel protein [Arabidopsis thaliana] gi|9294082|dbj|BAB01934.1| CLC-d chloride channel; anion channel protein [Arabidopsis thaliana] gi|17064884|gb|AAL32596.1| CLC-d chloride channel; anion channel protein [Arabidopsis thaliana] gi|332643754|gb|AEE77275.1| chloride channel protein CLC-b [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1033 bits (2670), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/605 (83%), Positives = 552/605 (91%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFGATT+IVKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGG DNHRIKW+WLRYFN
Sbjct: 176 MFGATTMIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNHRIKWRWLRYFN 235
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCGS++GVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLR
Sbjct: 236 NDRDRRDLITCGSAAGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRE 295
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIEIC SGKCGLFG GGLIMFDVS+V YHV DIIPV LIG+IGGILG LYNH+LHKVL
Sbjct: 296 FIEICNSGKCGLFGKGGLIMFDVSHVTYTYHVTDIIPVMLIGVIGGILGSLYNHLLHKVL 355
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
RLYNLIN+KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS E CPTNGRSGNFKQ
Sbjct: 356 RLYNLINEKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRSGNFKQ 415
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
F+CP G+YNDLATLLLTTNDDAVRN+FSSNTP EF S+ IFF+LYCILGL TFGIA P
Sbjct: 416 FHCPKGYYNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATP 475
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVIFLELT
Sbjct: 476 SGLFLPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELT 535
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITMIVLLIAKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR LTVGEL DAK
Sbjct: 536 NNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGELGDAK 595
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL G+EKVS IVDVL+NTTHN FPVLDE VP GLA ATELHGLILRAHLV L
Sbjct: 596 PPVVTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAHLVKVL 655
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KK+WFL EKRRTEEWEVREKF W ELAERE ++VA+TS EMEMY+DLHPLTNTTPYTV
Sbjct: 656 KKRWFLTEKRRTEEWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTV 715
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
+E+MSVAKA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP LE+SK
Sbjct: 716 MENMSVAKALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSK 775
Query: 601 SGQKH 605
G+ H
Sbjct: 776 GGKTH 780
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571521|ref|XP_003553925.1| PREDICTED: chloride channel protein CLC-b-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1031 bits (2667), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 519/607 (85%), Positives = 568/607 (93%), Gaps = 2/607 (0%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFGATTLIVKIIGSIGAV+AGLDLGKEGPLVHIGSCIASLLGQGGPDN+RIKW+WLRYFN
Sbjct: 183 MFGATTLIVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNYRIKWRWLRYFN 242
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCGSSSGVCAAFRAPVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLRA
Sbjct: 243 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRA 302
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIEIC +GKCGLFG GGLIMFDVSNV VRYHVMDI+ V +IGIIGG+LG LYNH+LHKVL
Sbjct: 303 FIEICHTGKCGLFGEGGLIMFDVSNVTVRYHVMDIVLVVVIGIIGGVLGSLYNHVLHKVL 362
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFK 239
RLYNLINQKG++HKLLL+L+V++FTS+C+Y LPFLA C CDPS PE TCPTNGRSGNFK
Sbjct: 363 RLYNLINQKGRIHKLLLSLAVALFTSMCEYGLPFLAKCTPCDPSLPESTCPTNGRSGNFK 422
Query: 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAV 299
QFNCP G+YNDLATLLLTTNDDAVRNIFS+NTP E+QP S++IFF+LYCILGLITFGIAV
Sbjct: 423 QFNCPPGYYNDLATLLLTTNDDAVRNIFSTNTPQEYQPLSLVIFFVLYCILGLITFGIAV 482
Query: 300 PSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL 359
PSGLFLPIILMGS YGRLLG+ MG +TNIDQGL+AVLGAASLMAGSMRMTVSLCVIFLEL
Sbjct: 483 PSGLFLPIILMGSGYGRLLGIYMGPHTNIDQGLFAVLGAASLMAGSMRMTVSLCVIFLEL 542
Query: 360 TNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDA 419
TNNLLLLPITMIVLLIAKTVGDSFNPSIYEIIL LKGLPF+DA+PEPWMR LTVGEL+D
Sbjct: 543 TNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILHLKGLPFMDANPEPWMRNLTVGELVDV 602
Query: 420 KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP-SGLANVATELHGLILRAHLVL 478
KP V+TL G+EKV++IVDVL+NTTHN FPV+D+GVVPP G AN TELHGLILRAHL+
Sbjct: 603 KPSVVTLHGVEKVAKIVDVLKNTTHNAFPVMDDGVVPPVVGQANGGTELHGLILRAHLIQ 662
Query: 479 ALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPY 538
ALKKKWFL+E+RRTEEWEVREKF+WVELAEREG IEEVAVTSEEMEM++DLHPLTNTTP+
Sbjct: 663 ALKKKWFLKERRRTEEWEVREKFTWVELAEREGSIEEVAVTSEEMEMFVDLHPLTNTTPF 722
Query: 539 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLER 598
TV+ESMSVAKAM+LFRQVGLRHLLVVPKY+A+GVSPV+GILTRQDL A NILT FPHL
Sbjct: 723 TVLESMSVAKAMILFRQVGLRHLLVVPKYQASGVSPVIGILTRQDLLAHNILTVFPHLAI 782
Query: 599 SKSGQKH 605
SK +K
Sbjct: 783 SKGREKR 789
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814954|ref|XP_002875360.1| CLC-B [Arabidopsis lyrata subsp. lyrata] gi|297321198|gb|EFH51619.1| CLC-B [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1030 bits (2664), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/605 (83%), Positives = 550/605 (90%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFGATT+IVKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGG DNHRIKW+WLRYFN
Sbjct: 175 MFGATTMIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNHRIKWRWLRYFN 234
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCGS++GVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLR
Sbjct: 235 NDRDRRDLITCGSAAGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRE 294
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIEIC SGKCGLFG GGLIMFDVS+V YHV DIIPV LIG+IGGILG LYNH LHKVL
Sbjct: 295 FIEICNSGKCGLFGKGGLIMFDVSHVTYTYHVTDIIPVMLIGVIGGILGSLYNHFLHKVL 354
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
RLYNLIN+KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS E CPTNGRSGNFKQ
Sbjct: 355 RLYNLINEKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRSGNFKQ 414
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCP G+YNDLATLLLTTNDDAVRN+FSSNTP EF S+ IFF+LYCILGL TFGIA P
Sbjct: 415 FNCPKGYYNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATP 474
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVIFLELT
Sbjct: 475 SGLFLPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELT 534
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITMIVLLIAKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR L+VGEL DAK
Sbjct: 535 NNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLSVGELGDAK 594
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL G+EKVS+IVDVL+NTTHN FPVLDE VP GL ATELHGLILRAHLV L
Sbjct: 595 PPVVTLQGVEKVSKIVDVLKNTTHNAFPVLDEAEVPQVGLPTSATELHGLILRAHLVKVL 654
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KK+WFL EKRRTEEWEVREKF W ELAERE ++VA+ S EMEMY+DLHPLTNTTPYTV
Sbjct: 655 KKRWFLTEKRRTEEWEVREKFPWDELAEREDNFDDVAIRSAEMEMYVDLHPLTNTTPYTV 714
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
+E+MSVAKA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP LE+SK
Sbjct: 715 MENMSVAKALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSK 774
Query: 601 SGQKH 605
G+ H
Sbjct: 775 GGKAH 779
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15237514|ref|NP_198905.1| chloride channel protein CLC-a [Arabidopsis thaliana] gi|41688456|sp|P92941.2|CLCA_ARATH RecName: Full=Chloride channel protein CLC-a; Short=AtCLC-a; AltName: Full=CBS domain-containing protein CBSCLC5 gi|2935344|gb|AAC05742.1| anion channel protein [Arabidopsis thaliana] gi|10177968|dbj|BAB11351.1| anion channel protein [Arabidopsis thaliana] gi|23297775|gb|AAN13022.1| anion channel protein [Arabidopsis thaliana] gi|332007229|gb|AED94612.1| chloride channel protein CLC-a [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1024 bits (2647), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/603 (83%), Positives = 550/603 (91%), Gaps = 6/603 (0%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFG TT++VKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKW+WLRYFN
Sbjct: 177 MFGFTTMMVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFN 236
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCGS+SGVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLRA
Sbjct: 237 NDRDRRDLITCGSASGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRA 296
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIEIC SGKCGLFG+GGLIMFDVS+V VRYH DIIPVTLIG+ GGILG LYNH+LHKVL
Sbjct: 297 FIEICNSGKCGLFGSGGLIMFDVSHVEVRYHAADIIPVTLIGVFGGILGSLYNHLLHKVL 356
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
RLYNLINQKGK+HK+LL+L VS+FTSVC + LPFLA+CK CDPS E CPTNGRSGNFKQ
Sbjct: 357 RLYNLINQKGKIHKVLLSLGVSLFTSVCLFGLPFLAECKPCDPSIDEICPTNGRSGNFKQ 416
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCPNG+YNDL+TLLLTTNDDAVRNIFSSNTP EF S+ IFF LYCILGLITFGIA P
Sbjct: 417 FNCPNGYYNDLSTLLLTTNDDAVRNIFSSNTPNEFGMVSLWIFFGLYCILGLITFGIATP 476
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMGSAYGR+LG AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT
Sbjct: 477 SGLFLPIILMGSAYGRMLGTAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 536
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITM VLLIAKTVGDSFN SIYEIIL LKGLPFL+A+PEPWMR LTVGEL DAK
Sbjct: 537 NNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLEANPEPWMRNLTVGELNDAK 596
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL+G+EKV+ IVDVLRNTTHN FPVLD N TELHGLILRAHLV L
Sbjct: 597 PPVVTLNGVEKVANIVDVLRNTTHNAFPVLD------GADQNTGTELHGLILRAHLVKVL 650
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KK+WFL EKRRTEEWEVREKF+ VELAERE ++VA+TS EM++Y+DLHPLTNTTPYTV
Sbjct: 651 KKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLHPLTNTTPYTV 710
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
++SMSVAKA+VLFR VGLRHLLVVPK +A+G+SPV+GILTRQDLRA+NIL AFPHL++ K
Sbjct: 711 VQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPHLDKHK 770
Query: 601 SGQ 603
SG+
Sbjct: 771 SGK 773
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|79329458|ref|NP_001031990.1| chloride channel protein CLC-a [Arabidopsis thaliana] gi|332007230|gb|AED94613.1| chloride channel protein CLC-a [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1023 bits (2646), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 504/603 (83%), Positives = 550/603 (91%), Gaps = 6/603 (0%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFG TT++VKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKW+WLRYFN
Sbjct: 45 MFGFTTMMVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFN 104
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCGS+SGVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLRA
Sbjct: 105 NDRDRRDLITCGSASGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRA 164
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
FIEIC SGKCGLFG+GGLIMFDVS+V VRYH DIIPVTLIG+ GGILG LYNH+LHKVL
Sbjct: 165 FIEICNSGKCGLFGSGGLIMFDVSHVEVRYHAADIIPVTLIGVFGGILGSLYNHLLHKVL 224
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
RLYNLINQKGK+HK+LL+L VS+FTSVC + LPFLA+CK CDPS E CPTNGRSGNFKQ
Sbjct: 225 RLYNLINQKGKIHKVLLSLGVSLFTSVCLFGLPFLAECKPCDPSIDEICPTNGRSGNFKQ 284
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCPNG+YNDL+TLLLTTNDDAVRNIFSSNTP EF S+ IFF LYCILGLITFGIA P
Sbjct: 285 FNCPNGYYNDLSTLLLTTNDDAVRNIFSSNTPNEFGMVSLWIFFGLYCILGLITFGIATP 344
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
SGLFLPIILMGSAYGR+LG AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT
Sbjct: 345 SGLFLPIILMGSAYGRMLGTAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 404
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
NNLLLLPITM VLLIAKTVGDSFN SIYEIIL LKGLPFL+A+PEPWMR LTVGEL DAK
Sbjct: 405 NNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLEANPEPWMRNLTVGELNDAK 464
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL+G+EKV+ IVDVLRNTTHN FPVLD N TELHGLILRAHLV L
Sbjct: 465 PPVVTLNGVEKVANIVDVLRNTTHNAFPVLD------GADQNTGTELHGLILRAHLVKVL 518
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KK+WFL EKRRTEEWEVREKF+ VELAERE ++VA+TS EM++Y+DLHPLTNTTPYTV
Sbjct: 519 KKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLHPLTNTTPYTV 578
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
++SMSVAKA+VLFR VGLRHLLVVPK +A+G+SPV+GILTRQDLRA+NIL AFPHL++ K
Sbjct: 579 VQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPHLDKHK 638
Query: 601 SGQ 603
SG+
Sbjct: 639 SGK 641
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| TAIR|locus:2095123 | 780 | CLC-B "chloride channel B" [Ar | 1.0 | 0.775 | 0.765 | 4.8e-252 | |
| TAIR|locus:2164466 | 775 | CLC-A "chloride channel A" [Ar | 0.986 | 0.770 | 0.771 | 1.9e-250 | |
| TAIR|locus:2158809 | 779 | CLC-C "chloride channel C" [Ar | 0.965 | 0.749 | 0.488 | 1.3e-153 | |
| TAIR|locus:2179724 | 792 | CLC-D "chloride channel D" [Ar | 0.935 | 0.714 | 0.423 | 2.7e-116 | |
| DICTYBASE|DDB_G0276865 | 815 | clcB "CLC 6/7 family protein" | 0.725 | 0.538 | 0.345 | 6.6e-79 | |
| ZFIN|ZDB-GENE-061103-196 | 795 | clcn7 "chloride channel 7" [Da | 0.925 | 0.704 | 0.324 | 3.5e-75 | |
| UNIPROTKB|F1NS73 | 802 | CLCN7 "Uncharacterized protein | 0.920 | 0.694 | 0.314 | 8.9e-70 | |
| UNIPROTKB|F1RG09 | 809 | LOC100626534 "Uncharacterized | 0.882 | 0.660 | 0.321 | 3e-69 | |
| UNIPROTKB|F1PGU2 | 870 | CLCN6 "Uncharacterized protein | 0.728 | 0.506 | 0.319 | 4e-69 | |
| UNIPROTKB|F1RF80 | 870 | CLCN6 "Uncharacterized protein | 0.728 | 0.506 | 0.319 | 4.9e-69 |
| TAIR|locus:2095123 CLC-B "chloride channel B" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2427 (859.4 bits), Expect = 4.8e-252, P = 4.8e-252
Identities = 463/605 (76%), Positives = 508/605 (83%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFGATT+IVKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGG DNHRIKW+WLRYFN
Sbjct: 176 MFGATTMIVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGTDNHRIKWRWLRYFN 235
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCGS++GVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLR
Sbjct: 236 NDRDRRDLITCGSAAGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRE 295
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVL 180
FIEIC SGKCGLFG GGLIMFDVS+V YHV DIIPV YNH+LHKVL
Sbjct: 296 FIEICNSGKCGLFGKGGLIMFDVSHVTYTYHVTDIIPVMLIGVIGGILGSLYNHLLHKVL 355
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
RLYNLIN+KGK+HK+LL+L+VS+FTSVC Y LPFLA CK CDPS E CPTNGRSGNFKQ
Sbjct: 356 RLYNLINEKGKIHKVLLSLTVSLFTSVCLYGLPFLAKCKPCDPSIDEICPTNGRSGNFKQ 415
Query: 241 FNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
F+CP G+Y VRN+FSSNTP EF S+ IFF+LYCILGL TFGIA P
Sbjct: 416 FHCPKGYYNDLATLLLTTNDDAVRNLFSSNTPNEFGMGSLWIFFVLYCILGLFTFGIATP 475
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFXXXX 360
SGLFLPIILMG+AYGR+LG AMGSYT+IDQGLYAVLGAA+LMAGSMRMTVSLCVIF
Sbjct: 476 SGLFLPIILMGAAYGRMLGAAMGSYTSIDQGLYAVLGAAALMAGSMRMTVSLCVIFLELT 535
Query: 361 XXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
AKTVGDSFNPSIY+IIL LKGLPFL+A+PEPWMR LTVGEL DAK
Sbjct: 536 NNLLLLPITMIVLLIAKTVGDSFNPSIYDIILHLKGLPFLEANPEPWMRNLTVGELGDAK 595
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL G+EKVS IVDVL+NTTHN FPVLDE VP GLA ATELHGLILRAHLV L
Sbjct: 596 PPVVTLQGVEKVSNIVDVLKNTTHNAFPVLDEAEVPQVGLATGATELHGLILRAHLVKVL 655
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KK+WFL EKRRTEEWEVREKF W ELAERE ++VA+TS EMEMY+DLHPLTNTTPYTV
Sbjct: 656 KKRWFLTEKRRTEEWEVREKFPWDELAEREDNFDDVAITSAEMEMYVDLHPLTNTTPYTV 715
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
+E+MSVAKA+VLFRQVGLRHLL+VPK +A+G+ PVVGILTRQDLRA+NIL AFP LE+SK
Sbjct: 716 MENMSVAKALVLFRQVGLRHLLIVPKIQASGMCPVVGILTRQDLRAYNILQAFPLLEKSK 775
Query: 601 SGQKH 605
G+ H
Sbjct: 776 GGKTH 780
|
|
| TAIR|locus:2164466 CLC-A "chloride channel A" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2412 (854.1 bits), Expect = 1.9e-250, P = 1.9e-250
Identities = 465/603 (77%), Positives = 509/603 (84%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
MFG TT++VKI+GSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKW+WLRYFN
Sbjct: 177 MFGFTTMMVKIVGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWRWLRYFN 236
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRDRRDLITCGS+SGVCAAFR+PVGGVLF+LEEVATWWRSALLWRTFFSTAVVVVVLRA
Sbjct: 237 NDRDRRDLITCGSASGVCAAFRSPVGGVLFALEEVATWWRSALLWRTFFSTAVVVVVLRA 296
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVL 180
FIEIC SGKCGLFG+GGLIMFDVS+V VRYH DIIPVT YNH+LHKVL
Sbjct: 297 FIEICNSGKCGLFGSGGLIMFDVSHVEVRYHAADIIPVTLIGVFGGILGSLYNHLLHKVL 356
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
RLYNLINQKGK+HK+LL+L VS+FTSVC + LPFLA+CK CDPS E CPTNGRSGNFKQ
Sbjct: 357 RLYNLINQKGKIHKVLLSLGVSLFTSVCLFGLPFLAECKPCDPSIDEICPTNGRSGNFKQ 416
Query: 241 FNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
FNCPNG+Y VRNIFSSNTP EF S+ IFF LYCILGLITFGIA P
Sbjct: 417 FNCPNGYYNDLSTLLLTTNDDAVRNIFSSNTPNEFGMVSLWIFFGLYCILGLITFGIATP 476
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFXXXX 360
SGLFLPIILMGSAYGR+LG AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIF
Sbjct: 477 SGLFLPIILMGSAYGRMLGTAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 536
Query: 361 XXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK 420
AKTVGDSFN SIYEIIL LKGLPFL+A+PEPWMR LTVGEL DAK
Sbjct: 537 NNLLLLPITMFVLLIAKTVGDSFNLSIYEIILHLKGLPFLEANPEPWMRNLTVGELNDAK 596
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
PPV+TL+G+EKV+ IVDVLRNTTHN FPVLD G N TELHGLILRAHLV L
Sbjct: 597 PPVVTLNGVEKVANIVDVLRNTTHNAFPVLD-GADQ-----NTGTELHGLILRAHLVKVL 650
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
KK+WFL EKRRTEEWEVREKF+ VELAERE ++VA+TS EM++Y+DLHPLTNTTPYTV
Sbjct: 651 KKRWFLNEKRRTEEWEVREKFTPVELAEREDNFDDVAITSSEMQLYVDLHPLTNTTPYTV 710
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSK 600
++SMSVAKA+VLFR VGLRHLLVVPK +A+G+SPV+GILTRQDLRA+NIL AFPHL++ K
Sbjct: 711 VQSMSVAKALVLFRSVGLRHLLVVPKIQASGMSPVIGILTRQDLRAYNILQAFPHLDKHK 770
Query: 601 SGQ 603
SG+
Sbjct: 771 SGK 773
|
|
| TAIR|locus:2158809 CLC-C "chloride channel C" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1498 (532.4 bits), Expect = 1.3e-153, P = 1.3e-153
Identities = 294/602 (48%), Positives = 407/602 (67%)
Query: 5 TTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRD 64
+TL VKI GSI VAAG +GKEGP+VH G+CIA+LLGQGG +R+ W+WLR+F NDRD
Sbjct: 190 STLFVKIFGSIFGVAAGFVVGKEGPMVHTGACIANLLGQGGSKKYRLTWKWLRFFKNDRD 249
Query: 65 RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEI 124
RRDLITCG+++GV AAFRAPVGGVLF+LEE A+WWR+ALLWRTFF+TAVV VVLR+ IE
Sbjct: 250 RRDLITCGAAAGVAAAFRAPVGGVLFALEEAASWWRNALLWRTFFTTAVVAVVLRSLIEF 309
Query: 125 CTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVLRLYN 184
C SG+CGLFG GGLIMFDV++ PV Y D++ + YN+++ KVLR Y+
Sbjct: 310 CRSGRCGLFGKGGLIMFDVNSGPVLYSTPDLLAIVFLGVIGGVLGSLYNYLVDKVLRTYS 369
Query: 185 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFKQFNC 243
+IN+KG K++L ++VS+ +S C + LP+L+ C C E CP+ GRS +K F C
Sbjct: 370 IINEKGPRFKIMLVMAVSILSSCCAFGLPWLSQCTPCPIGIEEGKCPSVGRSSIYKSFQC 429
Query: 244 PNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFI-LYCILGLITFGIAVPSG 302
P HY +RN+F+S + EF S++ IFF+ +YC LG+IT+GIA+PSG
Sbjct: 430 PPNHYNDLSSLLLNTNDDAIRNLFTSRSENEFHISTLAIFFVAVYC-LGIITYGIAIPSG 488
Query: 303 LFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFXXXXXX 362
LF+P+IL G++YGRL+G +G + +D GL+++LGAAS + G+MRMTVSLCVI
Sbjct: 489 LFIPVILAGASYGRLVGRLLGPVSQLDVGLFSLLGAASFLGGTMRMTVSLCVILLELTNN 548
Query: 363 XXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPP 422
+KTV D FN +Y+ I+ +KGLP+++ H EP+MR L +++
Sbjct: 549 LLMLPLVMLVLLISKTVADCFNRGVYDQIVTMKGLPYMEDHAEPYMRNLVAKDVVSGA-- 606
Query: 423 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482
+I+ S +EKV I L+ T HNGFPV+DE PP A+EL G+ LR+HL++ L+
Sbjct: 607 LISFSRVEKVGVIWQALKMTRHNGFPVIDE---PPF---TEASELCGIALRSHLLVLLQG 660
Query: 483 KWFLQEKRRTEEWEVREKFSWVELAER---EG-KIEEVAVTSEEMEMYIDLHPLTNTTPY 538
K F ++R T ++ + + +G KIE++ ++ EEMEMY+DLHP+TNT+PY
Sbjct: 661 KKF-SKQRTTFGSQILRSCKARDFGKAGLGKGLKIEDLDLSEEEMEMYVDLHPITNTSPY 719
Query: 539 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLER 598
TV+E++S+AKA +LFRQ+GLRHL VVPK G P+VGILTR D ++L +PH++
Sbjct: 720 TVLETLSLAKAAILFRQLGLRHLCVVPK--TPGRPPIVGILTRHDFMPEHVLGLYPHIDP 777
Query: 599 SK 600
K
Sbjct: 778 LK 779
|
|
| TAIR|locus:2179724 CLC-D "chloride channel D" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1146 (408.5 bits), Expect = 2.7e-116, P = 2.7e-116
Identities = 251/593 (42%), Positives = 354/593 (59%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
TLI KI GSIG+V GL LGKEGPLVH G+CIASLLGQGG + + +W + F +DRDR
Sbjct: 171 TLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSTKYHLNSRWPQLFKSDRDR 230
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
RDL+TCG ++GV AAFRAPVGGVLF+LEEV +WWRS L+WR FF++A+V VV+R + C
Sbjct: 231 RDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWRSQLMWRVFFTSAIVAVVVRTAMGWC 290
Query: 126 TSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHI-LHKVLRLYN 184
SG CG FG GG I++DVS+ Y+ +++P+ +N + L+ N
Sbjct: 291 KSGICGHFGGGGFIIWDVSDGQDDYYFKELLPMAVIGVIGGLLGALFNQLTLYMTSWRRN 350
Query: 185 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPET---CPTN-GRSGNFKQ 240
+++KG K++ A +S TS + LP L C C S P++ CP G GN+
Sbjct: 351 SLHKKGNRVKIIEACIISCITSAISFGLPLLRKCSPCPESVPDSGIECPRPPGMYGNYVN 410
Query: 241 FNCP-NGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAV 299
F C + Y +RN+FS+ T EF S+L F ++ L ++TFG AV
Sbjct: 411 FFCKTDNEYNDLATIFFNTQDDAIRNLFSAKTMREFSAQSLLTFLAMFYTLAVVTFGTAV 470
Query: 300 PSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIF 356
P+G F+P I++GS YGRL+GM + + NI++G YA+LGAAS + GSMRMTVSLCVI
Sbjct: 471 PAGQFVPGIMIGSTYGRLVGMFVVRFYKKLNIEEGTYALLGAASFLGGSMRMTVSLCVIM 530
Query: 357 XXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGEL 416
+K VGD+FN +YE+ LKG+P L++ P+ MR + E
Sbjct: 531 VEITNNLKLLPLIMLVLLISKAVGDAFNEGLYEVQARLKGIPLLESRPKYHMRQMIAKEA 590
Query: 417 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHL 476
++ VI+L + +V+ + +L + HNGFPV+D SG T + GL+LR+HL
Sbjct: 591 CQSQK-VISLPRVIRVADVASILGSNKHNGFPVIDH---TRSG----ETLVIGLVLRSHL 642
Query: 477 VLALKKKWFLQEKRRTEEWEVRE-KFSWVELAE---REGK-IEEVAVTSEEMEMYIDLHP 531
++ L+ K Q + R + S+ E A+ +G IE++ +TS+++EMYIDL P
Sbjct: 643 LVLLQSKVDFQHSPLPCDPSARNIRHSFSEFAKPVSSKGLCIEDIHLTSDDLEMYIDLAP 702
Query: 532 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
N +PY V E MS+ K LFRQ+GLRHL VVP+ S V+G++TR+DL
Sbjct: 703 FLNPSPYVVPEDMSLTKVYNLFRQLGLRHLFVVPR-----PSRVIGLITRKDL 750
|
|
| DICTYBASE|DDB_G0276865 clcB "CLC 6/7 family protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 6.6e-79, Sum P(2) = 6.6e-79
Identities = 158/457 (34%), Positives = 242/457 (52%)
Query: 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHR--IKWQWLRYF 59
F T++ K++ I + ++GL LG EGP+ HIG+ I S + Q + +K W+ F
Sbjct: 192 FNLKTVLGKLVSLIFSFSSGLVLGPEGPMFHIGAGIGSSMSQFKSKTLKFHLKSFWI--F 249
Query: 60 NNDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLR 119
ND D+RD I+CG+++G+ AAF AP+GGVLF LEE +++W L WRTFFS + +
Sbjct: 250 QNDSDKRDFISCGAAAGIAAAFGAPIGGVLFCLEEGSSFWSRQLTWRTFFSCLIATMTAN 309
Query: 120 AFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKV 179
F++ G G++ F VS + Y ++IP + H+ +V
Sbjct: 310 LFLQ----GFTQQIHDYGVLTFGVSKSYL-YTYTELIPFMIMGIIGGLLGAIFVHVNVRV 364
Query: 180 LRLYN-LINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCK---ACDPSFPETC-PTNGR 234
L K K++K++ + + +SV + LADC+ P TC P +
Sbjct: 365 NHWRKKLFANKSKLYKMIEVCVIVILSSVVCFFPALLADCRPISGISGLTPGTCDPGDDS 424
Query: 235 SGNFKQFNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLIT 294
+ QFNC G+Y ++ +FS +T F ++L F I Y +L +IT
Sbjct: 425 TLILNQFNCAEGYYNPMATLTLTTLENSLQIVFSRSTNI-FTAQTLLTFSIFYYVLTIIT 483
Query: 295 FGIAVPSGLFLPIILMGSAYGRLLGMAMGSY-TNIDQGLYAVLGAASLMAGSMRMTVSLC 353
G+ V SG+F+P++L+GS++GRL+G+ + Y T+ID +YA++GAAS+MAGS+RMT+SL
Sbjct: 484 SGLYVASGIFIPMMLIGSSWGRLIGIFLSKYFTSIDPSIYALIGAASMMAGSLRMTISLV 543
Query: 354 VIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTV 413
VI K GD FN SIYE ++ELK +P+L++ P +R TV
Sbjct: 544 VIIVELTETTQYLLPVILSVMVGKWCGDIFNESIYEHLIELKHIPYLNSQPPNHLRKKTV 603
Query: 414 GELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVL 450
E + V TL I KV + +L HNGFPV+
Sbjct: 604 AEAMSTD--VKTLPEIVKVKTALTILETCPHNGFPVV 638
|
|
| ZFIN|ZDB-GENE-061103-196 clcn7 "chloride channel 7" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 193/594 (32%), Positives = 315/594 (53%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
TL+VK+ G I +VA GL +GKEGP++H G+ +A+ + QG + + ++ YF D ++
Sbjct: 213 TLVVKVFGVICSVAGGLAVGKEGPMIHSGAVVAAGVSQGRSTSLKKDFKMFEYFRRDTEK 272
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
RD ++ G+++GV AAF APVGGVLFSLEE A++W L WR FF++ V L F+ I
Sbjct: 273 RDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQLLTWRIFFASMVSSFTLNFFLSIY 332
Query: 126 TSGKCGLFGTGGLIMFD-VSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVLRLYN 184
K G + GLI F + V+Y++ +I P+ ++L+ L ++
Sbjct: 333 HQ-KPGELSSPGLINFGRFDSDSVQYNLYEI-PLFIIMGALGGMLGALFNVLNYWLTIFR 390
Query: 185 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFKQFNC 243
+ +++ A+ V+ T+ + + + + +C+ P E P Q C
Sbjct: 391 IRYIHRPCLQVMEAMLVAAVTATVSFAMIYFSTECQPLGPDHTEEYPL--------QLFC 442
Query: 244 PNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 303
+G Y VR++F N P + P ++ +F + Y +L + T+G+ V +G+
Sbjct: 443 ADGEYNAMATAFFNTPERSVRSLFH-NPPGTYNPMTLGVFTLAYFLLAVWTYGLTVSAGV 501
Query: 304 FLPIILMGSAYGRLLGMAMGSYTN-----IDQGLYAVLGAASLMAGSMRMTVSLCVIFXX 358
F+P +L+G+A+GRL G+ + T D G YA++GAA+ + G +RMT+SL VI
Sbjct: 502 FIPSLLIGAAWGRLFGILLSFITTSKSIWADPGKYALIGAAAQLGGIVRMTLSLTVILVE 561
Query: 359 XXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELID 418
AK VGD F +Y+I ++L+ +PFL P LT E++
Sbjct: 562 ATGNVTYGFPIMLVLMTAKIVGDYFVEGLYDIHIKLQSVPFLHWEAPPTSHWLTAREVMS 621
Query: 419 AKPPVITLSGIEKVSQIVDVLRNTT--HNGFPVLDEGVVPPSGLANVATELHGLILRAHL 476
++ V + IEKV IVDVL NT+ HNGFPV+ V + ++L GL+LR+ L
Sbjct: 622 SQ--VTCFNRIEKVGTIVDVLSNTSTNHNGFPVVTH-VTE----IDEPSKLCGLVLRSQL 674
Query: 477 VLALKKKWFLQE-KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 535
++ LK K F++ R + +++ K + + R I+ + V+ +E E +DL N
Sbjct: 675 IVLLKHKVFVERASSRFSQRKLQLK-DFRDAYPRFPPIQSIHVSQDERECMMDLTEFMNP 733
Query: 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589
TPYTV + S+ + LFR +GLRHL+VV VVG++TR+DL +++
Sbjct: 734 TPYTVPQETSLPRVFKLFRALGLRHLVVVDNENR-----VVGLVTRKDLARYHL 782
|
|
| UNIPROTKB|F1NS73 CLCN7 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 707 (253.9 bits), Expect = 8.9e-70, P = 8.9e-70
Identities = 187/595 (31%), Positives = 310/595 (52%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
TL++K+ G I +V GL +GKEGP++H G+ IA+ + QG + + ++ YF D ++
Sbjct: 222 TLVIKVCGVILSVVGGLAVGKEGPMIHSGAVIAAGISQGRSTSLKRDFKIFEYFRRDTEK 281
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
RD ++ G+++GV AAF APVGGVLFSLEE A++W L WR FF++ + L + + +
Sbjct: 282 RDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLNSVLSVY 341
Query: 126 TSGKCGLFGTGGLIMFD-VSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVLRLYN 184
G + GLI F + + Y + +I P+ + L+ L ++
Sbjct: 342 -HGNAWDLSSPGLINFGRFDSEKMGYTIQEI-PIFIFMGVVGGILGALFNALNYWLTMFR 399
Query: 185 LINQKGKMHKLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFK-QFN 242
+ +++ A+ V+ T+ + + + + DC+ P G S + Q
Sbjct: 400 IRYIHRPCLQVIEAMLVAAVTAAVGFVMIYCSRDCQ----------PIQGSSVAYPLQLF 449
Query: 243 CPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 302
C +G Y V N+F + P + P ++ +F ++Y L T+G+ V +G
Sbjct: 450 CADGEYNSMATAFFNTPEKSVVNLFH-DPPGSYNPMTLGMFTLMYFFLACWTYGLTVSAG 508
Query: 303 LFLPIILMGSAYGRLLGMAMGSYTN-----IDQGLYAVLGAASLMAGSMRMTVSLCVIFX 357
+F+P +L+G+A+GRL G+++ SY + D G YA++GAA+ + G +RMT+SL VI
Sbjct: 509 VFIPSLLIGAAWGRLFGISL-SYLSKGSIWADPGKYALMGAAAQLGGIVRMTLSLTVIMM 567
Query: 358 XXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELI 417
AK VGD F +Y++ ++L+ +PFL +LT E++
Sbjct: 568 EATGNVTYGFPIMLVLMTAKIVGDYFVEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVM 627
Query: 418 DAKPPVITLSGIEKVSQIVDVLRNTT--HNGFPVLDEGVVPPSGLANVATELHGLILRAH 475
PV L IE+V +VD+L +T+ HNGFPV++ P+ VA L GLILR+
Sbjct: 628 ST--PVTCLRRIERVGTVVDILSDTSSNHNGFPVVESN---PN-TTQVAG-LRGLILRSQ 680
Query: 476 LVLALKKKWFLQEKRRTEEWEVREKFS-WVELAEREGKIEEVAVTSEEMEMYIDLHPLTN 534
L++ LK K F+ E+ + R K + + R I+ + V+ +E E IDL N
Sbjct: 681 LIVLLKHKVFV-ERANLNLVQRRLKLKDFRDAYPRFPPIQSIHVSQDERECMIDLSEFMN 739
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589
+PYTV + S+ + LFR +GLRHL+ V + + VVG++TR+DL + +
Sbjct: 740 PSPYTVPQEASLPRVFKLFRALGLRHLVGVNNH-----TEVVGMVTRKDLARYRL 789
|
|
| UNIPROTKB|F1RG09 LOC100626534 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 702 (252.2 bits), Expect = 3.0e-69, P = 3.0e-69
Identities = 184/572 (32%), Positives = 293/572 (51%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
TL++K+ G I +VA GL +GKEGP++H GS IA+ + QG + + ++ YF D ++
Sbjct: 230 TLVIKVSGVILSVAGGLAVGKEGPMIHSGSVIAAGISQGRSTSLKRDFKIFEYFRRDTEK 289
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
RD ++ G+++GV AAF APVGGVLFSLEE A++W L WR FF++ + L + I
Sbjct: 290 RDFVSAGAAAGVSAAFGAPVGGVLFSLEEGASFWNQFLTWRIFFASMISTFTLNFVLSIY 349
Query: 126 TSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTXXXXXXXXXXXXYNHILHKVLRLYNL 185
L + GLI F + + + IP+ + L+ L ++ +
Sbjct: 350 HGNMWDL-SSPGLINFGRFDTETMVYTIHEIPIFIAMGVVGGILGAVFNALNYWLTMFRI 408
Query: 186 INQKGKMHKLLLALSVSVFTSVCQYCLPFLA-DCKACDPSFPETCPTNGRSGNFK-QFNC 243
+++ A+ V+ T+ + L + + DC+ P G S ++ Q C
Sbjct: 409 RYIHRPCLQVIEAMLVAAVTATVAFVLIYSSRDCQ----------PLQGSSVSYPLQLFC 458
Query: 244 PNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 303
+G Y V ++F + P + P ++ +F ++Y L T+G+ V +G+
Sbjct: 459 ADGEYNSMAAAFFNTPEKSVVSLFH-DPPGSYNPMTLGLFTLVYFFLACWTYGLTVSAGV 517
Query: 304 FLPIILMGSAYGRLLGMAMGSYTNI----DQGLYAVLGAASLMAGSMRMTVSLCVIFXXX 359
F+P +L+G+A+GRL G+++ T D G YA++GAA+ + G +RMT+SL VI
Sbjct: 518 FIPSLLIGAAWGRLFGISLSYITGAAIWADPGKYALMGAAAQLGGIVRMTLSLTVIMMEA 577
Query: 360 XXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDA 419
AK VGD F +Y++ ++L+ +PFL +LT E++ A
Sbjct: 578 TSNVTYGFPIMLVLMTAKIVGDVFIEGLYDMHIQLQSVPFLHWEAPVTSHSLTAREVMSA 637
Query: 420 KPPVITLSGIEKVSQIVDVLRNTT--HNGFPVLD--EGVVPPSGLANVATELHGLILRAH 475
PV L EKV IVDVL N+ HNGFPV+D + PP L GLILR+
Sbjct: 638 --PVTCLRRREKVGVIVDVLSNSASNHNGFPVVDGADAAQPP--------RLQGLILRSQ 687
Query: 476 LVLALKKKWFLQEKRRTEEWEVREKFSWVELAE---REGKIEEVAVTSEEMEMYIDLHPL 532
L++ LK K F++ R+ VR + + + R I+ + V+ +E E +DL
Sbjct: 688 LIVLLKHKVFVE---RSSMGLVRRRLRLKDFRDAYPRFPPIQSIHVSQDERECTMDLSEF 744
Query: 533 TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 564
N +PYTV + S+ + LFR +GLRHL+VV
Sbjct: 745 MNPSPYTVPQEASLPRVFKLFRALGLRHLVVV 776
|
|
| UNIPROTKB|F1PGU2 CLCN6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 578 (208.5 bits), Expect = 4.0e-69, Sum P(2) = 4.0e-69
Identities = 149/467 (31%), Positives = 237/467 (50%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQW-LRYFNNDRD 64
TL+ K+ G + +VA GL +GKEGP++H G+ + + L Q + R K Q+ YF +DRD
Sbjct: 179 TLLCKVFGVLFSVAGGLFVGKEGPMIHSGAVVGAGLPQFQSISLR-KIQFNFPYFRSDRD 237
Query: 65 RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEI 124
+RD ++ G+++GV AAF AP+GG LFSLEE +++W L W+ F + L F
Sbjct: 238 KRDFVSAGAAAGVAAAFGAPIGGTLFSLEEGSSFWNQGLTWKVLFCSMSATFTLNFFRSG 297
Query: 125 CTSGKCGLFGTGGLIMFD---VSNVPVRYHV---MDIIPVTXXXXXXXXXXXXYNHILHK 178
G G F GL+ F S+ + H+ MD+ +N L+K
Sbjct: 298 IQFGSWGSFQLPGLLNFGEFKCSDSDKKCHLWTAMDLGFFVVMGVIGGLLGATFN-CLNK 356
Query: 179 VLRLYNL--INQKGKMHKLLLALSVSVFTSVCQYCLPF-LADCKAC-------DPSFPET 228
L Y + ++ K K+ ++L +L VSV T+V + L +C+ + SF
Sbjct: 357 RLAKYRMRNVHPKPKLVRVLESLLVSVVTTVVVFTASMVLGECRQMSASGQIGNDSFQLQ 416
Query: 229 CPTNGRSGNFKQFNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYC 288
+ + + K F CPN Y + +F + F P ++ +FF+LY
Sbjct: 417 VSSEDVNSSIKTFFCPNETYNDMATLFFNPQESAILQLFHQDGT--FSPVTLALFFVLYF 474
Query: 289 ILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLYAVLGAASLMAGS 345
+L T+GI+VPSGLF+P +L G+A+GRL+ + SY +I G +A++GAA+ + G
Sbjct: 475 LLACWTYGISVPSGLFVPSLLCGAAFGRLVANVLKSYIGLGHIYSGTFALIGAAAFLGGV 534
Query: 346 MRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPE 405
+RMT+SL VI AK GD FN IY+I + L+G+P L+ E
Sbjct: 535 VRMTISLTVILIESTNEITYGLPIMITLMVAKWTGDFFNKGIYDIHVGLRGVPLLEWETE 594
Query: 406 PWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE 452
M L ++++ P + + ++ +V +LR T H+ FPV+ E
Sbjct: 595 AEMDKLRASDIME--PNLTYVYPHTRIQSLVSILRTTVHHAFPVVTE 639
|
|
| UNIPROTKB|F1RF80 CLCN6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 579 (208.9 bits), Expect = 4.9e-69, Sum P(2) = 4.9e-69
Identities = 149/467 (31%), Positives = 237/467 (50%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQW-LRYFNNDRD 64
TL+ K+ G + +VA GL +GKEGP++H GS + + L Q + R K Q+ YF +DRD
Sbjct: 179 TLLCKVFGVLFSVAGGLFVGKEGPMIHSGSVVGAGLPQFQSISLR-KIQFNFPYFRSDRD 237
Query: 65 RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEI 124
+RD ++ G+++GV AAF AP+GG LFSLEE +++W L W+ F + L F
Sbjct: 238 KRDFVSAGAAAGVAAAFGAPIGGTLFSLEEGSSFWNQGLTWKVLFCSMSATFTLNFFRSG 297
Query: 125 CTSGKCGLFGTGGLIMFD---VSNVPVRYHV---MDIIPVTXXXXXXXXXXXXYNHILHK 178
G G F GL+ F S+ + H+ MD+ +N L+K
Sbjct: 298 IQFGSWGSFQLPGLLNFGEFKCSDSDKKCHLWTAMDLGFFVVMGVTGGLLGATFN-CLNK 356
Query: 179 VLRLYNL--INQKGKMHKLLLALSVSVFTSVCQYCLPF-LADCKAC-------DPSFPET 228
L Y + ++ K K+ ++L +L VS+ T+V + L +C+ + SF
Sbjct: 357 RLAKYRMRNVHPKPKLVRVLESLLVSLVTTVVVFVASMVLGECRQMSSAGQVGNDSFQLQ 416
Query: 229 CPTNGRSGNFKQFNCPNGHYXXXXXXXXXXXXXXVRNIFSSNTPTEFQPSSILIFFILYC 288
+ + + K F CPN Y + +F + F P ++ +FF+LY
Sbjct: 417 VTSEDVNSSIKTFFCPNETYNDMATLFFNPQESAILQLFHQDGT--FSPITLALFFVLYF 474
Query: 289 ILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYT---NIDQGLYAVLGAASLMAGS 345
+L T+GI+VPSGLF+P +L G+A+GRL+ + SY +I G +A++GAA+ + G
Sbjct: 475 VLACWTYGISVPSGLFVPSLLCGAAFGRLVANVLKSYIGLGHIYSGTFALIGAAAFLGGV 534
Query: 346 MRMTVSLCVIFXXXXXXXXXXXXXXXXXXXAKTVGDSFNPSIYEIILELKGLPFLDAHPE 405
+RMT+SL VI AK GD FN IY+I + L+G+P L+ E
Sbjct: 535 VRMTISLTVILIESTNEITYGLPIMITLMVAKWTGDFFNKGIYDIHVGLRGVPLLEWETE 594
Query: 406 PWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE 452
M L ++++ P + + ++ +V +LR T H+ FPV+ E
Sbjct: 595 VEMDKLRASDIME--PNLTYVYPHTRIQSLVSILRTTVHHAFPVVTE 639
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P92942 | CLCB_ARATH | No assigned EC number | 0.8363 | 1.0 | 0.7756 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 605 | |||
| cd03685 | 466 | cd03685, ClC_6_like, ClC-6-like chloride channel p | 1e-115 | |
| cd03684 | 445 | cd03684, ClC_3_like, ClC-3-like chloride channel p | 3e-73 | |
| cd03685 | 466 | cd03685, ClC_6_like, ClC-6-like chloride channel p | 1e-63 | |
| pfam00654 | 345 | pfam00654, Voltage_CLC, Voltage gated chloride cha | 2e-59 | |
| cd01036 | 416 | cd01036, ClC_euk, Chloride channel, ClC | 9e-53 | |
| cd00400 | 383 | cd00400, Voltage_gated_ClC, CLC voltage-gated chlo | 5e-37 | |
| cd01031 | 402 | cd01031, EriC, ClC chloride channel EriC | 1e-34 | |
| COG0038 | 443 | COG0038, EriC, Chloride channel protein EriC [Inor | 5e-33 | |
| cd01036 | 416 | cd01036, ClC_euk, Chloride channel, ClC | 1e-30 | |
| cd03683 | 426 | cd03683, ClC_1_like, ClC-1-like chloride channel p | 1e-24 | |
| cd03683 | 426 | cd03683, ClC_1_like, ClC-1-like chloride channel p | 2e-22 | |
| PRK05277 | 438 | PRK05277, PRK05277, chloride channel protein; Prov | 3e-22 | |
| cd04591 | 105 | cd04591, CBS_pair_EriC_assoc_euk_bac, This cd cont | 4e-19 | |
| cd01034 | 390 | cd01034, EriC_like, ClC chloride channel family | 4e-15 | |
| cd01033 | 388 | cd01033, ClC_like, Putative ClC chloride channel | 6e-09 | |
| PRK01862 | 574 | PRK01862, PRK01862, putative voltage-gated ClC-typ | 3e-06 | |
| cd02205 | 113 | cd02205, CBS_pair, The CBS domain, named after hum | 1e-04 | |
| PRK01610 | 418 | PRK01610, PRK01610, putative voltage-gated ClC-typ | 2e-04 | |
| cd03682 | 378 | cd03682, ClC_sycA_like, ClC sycA-like chloride cha | 5e-04 | |
| PRK01862 | 574 | PRK01862, PRK01862, putative voltage-gated ClC-typ | 8e-04 | |
| cd04610 | 107 | cd04610, CBS_pair_ParBc_assoc, This cd contains tw | 0.002 | |
| cd01034 | 390 | cd01034, EriC_like, ClC chloride channel family | 0.003 | |
| pfam00571 | 57 | pfam00571, CBS, CBS domain | 0.004 |
| >gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 351 bits (902), Expect = e-115
Identities = 121/215 (56%), Positives = 155/215 (72%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
+ TL+VKI+G I +V+ GL LGKEGP++HIG+CIA+ L QGG + R+ ++W RYF
Sbjct: 123 ILRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFR 182
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
NDRD+RD +TCG+++GV AAF APVGGVLFSLEEVA++W AL WRTFFS+ +V L
Sbjct: 183 NDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNF 242
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
F+ C SGKCGLFG GGLIMFD S+ Y ++IP LIG+IGG+LG L+NH+ HKV
Sbjct: 243 FLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLIGVIGGLLGALFNHLNHKVT 302
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFL 215
R IN KGK+ K+L AL VS+ TSV + L
Sbjct: 303 RFRKRINHKGKLLKVLEALLVSLVTSVVAFPQTLL 337
|
This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. Length = 466 |
| >gnl|CDD|239656 cd03684, ClC_3_like, ClC-3-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 240 bits (616), Expect = 3e-73
Identities = 131/429 (30%), Positives = 207/429 (48%), Gaps = 87/429 (20%)
Query: 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNN 61
G TL++K +G + AVA+GL LGKEGPLVHI +C+ +++ R+ + +Y N
Sbjct: 74 LGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIIS-------RL---FPKYRRN 123
Query: 62 DRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAF 121
+ RR++++ +++GV AF AP+GGVLFSLEEV+ ++ LWR+FF V L++
Sbjct: 124 EAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL 183
Query: 122 IEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLR 181
FGTG L++F+V +H ++IP L+GI GG+ G + K R
Sbjct: 184 ---------NPFGTGRLVLFEV-EYDRDWHYFELIPFILLGIFGGLYGAFFIKANIKWAR 233
Query: 182 LYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFL------------ADCKACDPSFPETC 229
K + +L L V++ T++ + P+ +C+ D + C
Sbjct: 234 FR--KKSLLKRYPVLEVLLVALITALISFPNPYTRLDMTELLELLFNECEPGDDN--SLC 289
Query: 230 PTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCI 289
++ +G Y L +LLL I +L I
Sbjct: 290 -------CYRDPPAGDGVYKALWSLLLAL-----------------------IIKLLLTI 319
Query: 290 LGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTN-----------------IDQGL 332
TFGI VP+G+F+P + +G+ +GR++G+ + I GL
Sbjct: 320 ---FTFGIKVPAGIFVPSMAVGALFGRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGL 376
Query: 333 YAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNP-SIYEII 391
YA++GAA+ + G RMTVSL VI ELT L + MI ++++K V D+ IY+
Sbjct: 377 YAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSKWVADAIGKEGIYDAH 436
Query: 392 LELKGLPFL 400
+ L G PFL
Sbjct: 437 IHLNGYPFL 445
|
This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidney stones (nephrolithiasis), leading to progressive renal failure. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl- and I-) channel proteins, that perform a variety of functions including cell volume regulation, the membrane potential stabilization, transepithelial chloride transport and charge compensation necessary for the acidification of intracellular organelles. Length = 445 |
| >gnl|CDD|239657 cd03685, ClC_6_like, ClC-6-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 1e-63
Identities = 83/127 (65%), Positives = 103/127 (81%), Gaps = 3/127 (2%)
Query: 277 PSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLY 333
P ++LIFF+LY L TFGIAVPSGLF+P+IL+G+AYGRL+G+ +GSY T+ID GLY
Sbjct: 333 PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGILLGSYFGFTSIDPGLY 392
Query: 334 AVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILE 393
A+LGAA+ + G MRMTVSL VI LELTNNL LP M+VL+IAK VGD FN IY+II++
Sbjct: 393 ALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQ 452
Query: 394 LKGLPFL 400
LKG+PFL
Sbjct: 453 LKGVPFL 459
|
This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. Length = 466 |
| >gnl|CDD|216046 pfam00654, Voltage_CLC, Voltage gated chloride channel | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 2e-59
Identities = 99/379 (26%), Positives = 168/379 (44%), Gaps = 76/379 (20%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
L+VK +G++ + +G LG+EGP V IG+ I S LG+ L+ NDR
Sbjct: 39 VLLVKFLGTLLTLGSGGSLGREGPSVQIGAAIGSGLGR-----------RLKLSRNDR-- 85
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
R LI G+++G+ AAF AP+ GVLF+LEE++ + L ++ V +V R
Sbjct: 86 RRLIAAGAAAGIAAAFNAPLAGVLFALEELSRSFSYRALLPVLVASVVAALVSRL----- 140
Query: 126 TSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNL 185
LFG L F+V ++P ++++ L+GI+ G+LG L+ +L KV RL+
Sbjct: 141 ------LFGNEPL--FEVPSLPP-LSLLELPLFILLGILCGLLGALFVRLLLKVERLFRR 191
Query: 186 INQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPN 245
+ + +L + + LP
Sbjct: 192 LKKL---PPILRPALGGLLVGLLGLFLP-------------------------------- 216
Query: 246 GHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 305
+L ++ + + +T + +L+ +L + ++ G P G+F
Sbjct: 217 --------EVLGGGYGLIQLLLNGSTLS---LLLLLLLLLLKLLATALSLGSGAPGGIFA 265
Query: 306 PIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN 362
P + +G+A GRLLG+ + G +A+LG A+ +AG R ++ V+ ELT +
Sbjct: 266 PSLFIGAALGRLLGLLLPLLFPGIAPSPGAFALLGMAAFLAGVTRAPLTAIVLVFELTGS 325
Query: 363 LLLLPITMIVLLIAKTVGD 381
LL M+ +LIA V
Sbjct: 326 YSLLLPLMLAVLIAYLVSR 344
|
This family of ion channels contains 10 or 12 transmembrane helices. Each protein forms a single pore. It has been shown that some members of this family form homodimers. In terms of primary structure, they are unrelated to known cation channels or other types of anion channels. Three ClC subfamilies are found in animals. ClC-1 is involved in setting and restoring the resting membrane potential of skeletal muscle, while other channels play important parts in solute concentration mechanisms in the kidney. These proteins contain two pfam00571 domains. Length = 345 |
| >gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC | Back alignment and domain information |
|---|
Score = 186 bits (473), Expect = 9e-53
Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 4/220 (1%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
TLI K I I AVA+GL LGKEGPLVH+G+ I + L QG + F
Sbjct: 82 YLSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFR 141
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
N RDRRD + G+++GV +AF AP+GG+LF LEEV+T++ L WR FF+ V V++
Sbjct: 142 NPRDRRDFLVAGAAAGVASAFGAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQI 201
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
+ + + + + V + V ++ + IP +IG+I G+L L+ + L
Sbjct: 202 YNSFNSGFELLDRSSAMFLSLTVFELHVPLNLYEFIPTVVIGVICGLLAALFVRLSIIFL 261
Query: 181 RLY-NLINQKGKMHKLLLALSVSVFTSVCQY---CLPFLA 216
R L+ +K +++L + ++ S Y L FL
Sbjct: 262 RWRRRLLFRKTARYRVLEPVLFTLIYSTIHYAPTLLLFLL 301
|
These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 416 |
| >gnl|CDD|238233 cd00400, Voltage_gated_ClC, CLC voltage-gated chloride channel | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 5e-37
Identities = 86/374 (22%), Positives = 158/374 (42%), Gaps = 78/374 (20%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
+VK + S + +G +G+EGP+V IG+ I S LG+ LR + DR
Sbjct: 84 VALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR-----------RLRL--SRNDR 130
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEIC 125
R L+ CG+++G+ AAF AP+ G LF++E + + +++ V+L +
Sbjct: 131 RILVACGAAAGIAAAFNAPLAGALFAIEVLL---------GEYSVASLIPVLLASVAAAL 181
Query: 126 TSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNL 185
S LFG F V ++++ L+G++ G++G L+ +L+K+ RL+
Sbjct: 182 VSR--LLFGAEPA--FGVPLYDPL-SLLELPLYLLLGLLAGLVGVLFVRLLYKIERLF-- 234
Query: 186 INQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPN 245
++ + L + + LP + +
Sbjct: 235 --RRLPIPPWLRPALGGLLLGLLGLFLPQV---------------------------LGS 265
Query: 246 GHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 305
G+ L L E +L+ +L + +T G P G+F
Sbjct: 266 GYGAILLAL-----------------AGELSLLLLLLLLLLKLLATALTLGSGFPGGVFA 308
Query: 306 PIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN 362
P + +G+A G G+ + + G YA++G A+L+A +R ++ ++ LELT +
Sbjct: 309 PSLFIGAALGAAFGLLLPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGD 368
Query: 363 LLLLPITMIVLLIA 376
LL M+ ++IA
Sbjct: 369 YSLLLPLMLAVVIA 382
|
The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore homodimers with one pore per subunit without axial symmetry. Although lacking the typical voltage-sensor found in cation channels, all studied ClC channels are gated (opened and closed) by transmembrane voltage. The gating is conferred by the permeating ion itself, acting as the gating charge. In addition, eukaryotic and some prokaryotic ClC channels have two additional C-terminal CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 383 |
| >gnl|CDD|238504 cd01031, EriC, ClC chloride channel EriC | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 1e-34
Identities = 102/399 (25%), Positives = 170/399 (42%), Gaps = 82/399 (20%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
L VK +G + A+ +GL LG+EGP V IG+ I + + W +
Sbjct: 80 PNWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFK--T 126
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
+ +RR LI G+++G+ AAF AP+ GVLF LEE+ + L ++ V R
Sbjct: 127 SPEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRL 186
Query: 121 FIEICTSGKCGLFGTG-GLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKV 179
F FG G L + + +P++ + + ++ +GII G+LG L+N L K
Sbjct: 187 F-----------FGLGPVLSIPPLPALPLKSYWLLLL----LGIIAGLLGYLFNRSLLKS 231
Query: 180 LRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFK 239
LY + + + ++LL + + PE G
Sbjct: 232 QDLYRKLKKLPRELRVLLPGLLIGPLGL----------------LLPEA--LGG------ 267
Query: 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAV 299
GH + ++ N S +L+ F+L I ++++G
Sbjct: 268 ------GHGL-------------ILSLAGGNFS----ISLLLLIFVLRFIFTMLSYGSGA 304
Query: 300 PSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGL---YAVLGAASLMAGSMRMTVSLCVIF 356
P G+F P++ +G+ G L G + I +A+ G A+ A +R ++ ++
Sbjct: 305 PGGIFAPMLALGALLGLLFGTILVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILV 364
Query: 357 LELTNNL-LLLPITMIVLLIAKTVGDSFN-PSIYEIILE 393
E+T N LLLP+ M+V L+A V D IYE +LE
Sbjct: 365 TEMTGNFNLLLPL-MVVCLVAYLVADLLGGKPIYEALLE 402
|
This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter. Length = 402 |
| >gnl|CDD|223116 COG0038, EriC, Chloride channel protein EriC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-33
Identities = 100/408 (24%), Positives = 162/408 (39%), Gaps = 80/408 (19%)
Query: 5 TTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRD 64
L VK++ ++ + +G LG+EGP V IG+ I SLLG + L+ + D
Sbjct: 111 RVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLG-----------RLLKL--SRED 157
Query: 65 RRDLITCGSSSGVCAAFRAPVGGVLFSLEEVA-TWWRSALLWRTFFSTAVVVVVLRAFIE 123
RR L+ G+++G+ AAF AP+ G LF++E + + L + V ++V F
Sbjct: 158 RRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF-- 215
Query: 124 ICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLY 183
G + + P + D++ ++GII G+ G L + +L R +
Sbjct: 216 -----------GGPHFLLPIVTTP-HMSLWDLLLYLVLGIIAGLFGVLLSRLLALSRRFF 263
Query: 184 NLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNC 243
+ + L L V + FPE G Q
Sbjct: 264 RRLPLPPLLRPALGGLLVGALGLL-----------------FPEVL---GNGYGLIQLAL 303
Query: 244 PNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 303
G L LLL F+L + L+++G P G+
Sbjct: 304 -AGEGGLLVLLLL---------------------------FLLKLLATLLSYGSGAPGGI 335
Query: 304 FLPIILMGSAYGRLLGMAMGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
F P + +G+A G G +G ++ GL+A+LG A+ +A + R ++ V+ LE+T
Sbjct: 336 FAPSLFIGAALGLAFGALLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMT 395
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNP-SIYEIILELKGLPFLDAHPEPW 407
N LL +I LIA V IY +L +G P L
Sbjct: 396 GNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRGAPILREERAEP 443
|
Length = 443 |
| >gnl|CDD|238507 cd01036, ClC_euk, Chloride channel, ClC | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 1e-30
Identities = 47/122 (38%), Positives = 77/122 (63%), Gaps = 11/122 (9%)
Query: 279 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAM-----------GSYTN 327
++L+F ++Y + + FGIAVP G F+P +++G+A GRL+G+ + +
Sbjct: 295 TLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVGLLVHRIAVAGIGAESATLW 354
Query: 328 IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSI 387
D G+YA++GAA+ + G+ R+T S+CVI +ELT +L L M+ +LIAK V D+F S+
Sbjct: 355 ADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESL 414
Query: 388 YE 389
Y
Sbjct: 415 YH 416
|
These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. Length = 416 |
| >gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 65/217 (29%), Positives = 103/217 (47%), Gaps = 23/217 (10%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
TL+ K+IG A+ +GL LGKEGP VHI S +A+LL ++ + + N+ R
Sbjct: 95 TLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLS-------KLTTFFSGIYENESRR 147
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFS---TAVVVVVLRAFI 122
+++ + GV F AP+GGVLFS+E +T++ WR FF+ A +L F
Sbjct: 148 MEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFF 207
Query: 123 EICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLY---NHILHKV 179
T + P + V ++ L+GII G+LG L+ + + +
Sbjct: 208 ------SDQETITALFKTTFFVDFP--FDVQELPIFALLGIICGLLGALFVFLHRKIVRF 259
Query: 180 LRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLA 216
R L ++ K LL V++ T+V + PFL
Sbjct: 260 RRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--PFLT 294
|
This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelial chloride transport. Length = 426 |
| >gnl|CDD|239655 cd03683, ClC_1_like, ClC-1-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 2e-22
Identities = 47/133 (35%), Positives = 80/133 (60%), Gaps = 13/133 (9%)
Query: 279 SILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG----------MAMGSYTNI 328
++ +F ++ +L + + VP+G+F+P+ ++G+A GRL+G + G I
Sbjct: 294 TLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGRLVGEIMAVLFPEGIRGGISNPI 353
Query: 329 DQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNL-LLLPITMIVLLIAKTVGDSFNPSI 387
G YAV+GAA+ +G++ TVS+ VI ELT + LLP+ +I +LI+ V PSI
Sbjct: 354 GPGGYAVVGAAAF-SGAVTHTVSVAVIIFELTGQISHLLPV-LIAVLISNAVAQFLQPSI 411
Query: 388 YEIILELKGLPFL 400
Y+ I+++K LP+L
Sbjct: 412 YDSIIKIKKLPYL 424
|
This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelial chloride transport. Length = 426 |
| >gnl|CDD|235385 PRK05277, PRK05277, chloride channel protein; Provisional | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 3e-22
Identities = 94/398 (23%), Positives = 168/398 (42%), Gaps = 86/398 (21%)
Query: 7 LIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRR 66
L VK G +G + +G+ LG+EGP V +G I ++ R +++ R
Sbjct: 93 LPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVL-----------DIFRLRSDEA-RH 140
Query: 67 DLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALL--WRTFFSTAVVVVVLRAFIEI 124
L+ G+++G+ AAF AP+ G+LF +EE+ +R +L+ F + +V R F
Sbjct: 141 TLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLFN-- 198
Query: 125 CTSGKCGLFGTGGLI-MFDVSNVPVRYHVMDIIPVTLI-GIIGGILGGLYNHILHKVLRL 182
G +I + S P+ + + + L+ GII GI G L+N +L + L
Sbjct: 199 ---------GEQAVIEVGKFSAPPL-----NTLWLFLLLGIIFGIFGVLFNKLLLRTQDL 244
Query: 183 YNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFN 242
++ ++ K +L+ +V + P G
Sbjct: 245 FDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAAVG-----------------GG------ 281
Query: 243 CPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 302
+ + + N F +L F+ I L+ FG P G
Sbjct: 282 -----------------FNLIPIALAGN----FSIGMLLFIFVARFITTLLCFGSGAPGG 320
Query: 303 LFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL 359
+F P++ +G+ G GM + +I+ G +A+ G +L A ++R ++ V+ LE+
Sbjct: 321 IFAPMLALGTLLGLAFGMVAAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEM 380
Query: 360 TNN-LLLLPITMIVL---LIAKTVGDSFNPSIYEIILE 393
T+N L+LP+ + L L+A+ +G IY +LE
Sbjct: 381 TDNYQLILPLIITCLGATLLAQFLG---GKPIYSALLE 415
|
Length = 438 |
| >gnl|CDD|239964 cd04591, CBS_pair_EriC_assoc_euk_bac, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 4e-19
Identities = 50/168 (29%), Positives = 66/168 (39%), Gaps = 63/168 (37%)
Query: 420 KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479
P V+ L V + +L T+HNGFPV+D P L G ILR+ LV+A
Sbjct: 1 VPLVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESP--------RLVGYILRSQLVVA 52
Query: 480 LKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYT 539
LK YID +P+T
Sbjct: 53 LKN-------------------------------------------YID------PSPFT 63
Query: 540 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
V S+ K LFR++GLRHLLVV + +VGI+TR+DL
Sbjct: 64 VSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGIITRKDLLKA 105
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in CLC chloride channel family members have been associated with classic Bartter syndrome, Osteopetrosis, Dent's disease, idiopathic generalized epilepsy, and myotonia. Length = 105 |
| >gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 4e-15
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 26/172 (15%)
Query: 10 KIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLI 69
KI+ ++ + G +G+EGP V IG+ + +G+ P KW L R LI
Sbjct: 83 KILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLP-----KWGGLS-------ERGLI 130
Query: 70 TCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGK 129
G ++G+ AAF P+ G++F++EE++ R F +V+L +G
Sbjct: 131 LAGGAAGLAAAFNTPLAGIVFAIEELS---------RDFELRFSGLVLLAVIA----AGL 177
Query: 130 CGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLR 181
L G F V+ V + + V + G++GG+ GGL+ +L +
Sbjct: 178 VSLAVLGNYPYFGVAAVALPLG-EAWLLVLVCGVVGGLAGGLFARLLVALSS 228
|
These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 390 |
| >gnl|CDD|238505 cd01033, ClC_like, Putative ClC chloride channel | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 6e-09
Identities = 72/362 (19%), Positives = 128/362 (35%), Gaps = 80/362 (22%)
Query: 15 IGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSS 74
I V G LG+E +G+ +A WL DRR L+ C +
Sbjct: 93 IVTVGLGAPLGREVAPREVGALLAQRFSD-----------WLGL--TVADRRLLVACAAG 139
Query: 75 SGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFG 134
+G+ A + P+ G LF+LE +L RT +VV + + I +
Sbjct: 140 AGLAAVYNVPLAGALFALE---------ILLRTISLRSVVAALATSAIAAAVAS----LL 186
Query: 135 TGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHK 194
G ++D+ + + ++ I L G + G++ + + KGK
Sbjct: 187 KGDHPIYDIPPMQLSTPLL--IWALLAGPVLGVVAAGFRRLSQAARAK----RPKGK-RI 239
Query: 195 LLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATL 254
L + + FP+ NGR+ F+
Sbjct: 240 LWQMPLAFLVIGLLSI-------------FFPQI-LGNGRALAQLAFS------------ 273
Query: 255 LLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAY 314
T S +LI +L + L+ GL P + +G+
Sbjct: 274 ------------------TTLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALL 315
Query: 315 GRLLGMAMGSYTNIDQ-GLYAVLGAASLMAGSMRMTVSLCVIFLELT--NNLLLLPITMI 371
G LLG+ + +A++GAA+ +A + + ++ ++ LE T N L L+P+ +
Sbjct: 316 GALLGIVWNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLA 375
Query: 372 VL 373
V
Sbjct: 376 VA 377
|
Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 388 |
| >gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 10/137 (7%)
Query: 293 ITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMT 349
T G G+F P + +G+ G L G+AM + YA++G + +AG+ +
Sbjct: 329 ATAGSGAVGGVFTPTLFVGAVVGSLFGLAMHALWPGHTSAPFAYAMVGMGAFLAGATQAP 388
Query: 350 VSLCVIFLELT-NNLLLLPITMIVLLIAKTVGDSFNP-SIYEIILELKGLPFLDAHPEPW 407
+ ++ E+T + ++LP M+ ++A + S+YEI L D
Sbjct: 389 LMAILMIFEMTLSYQVVLP-LMVSCVVAYFTARALGTTSMYEITLRRHQ----DEAERER 443
Query: 408 MRTLTVGELIDAKPPVI 424
+RT + ELI V+
Sbjct: 444 LRTTQMRELIQPAQTVV 460
|
Length = 574 |
| >gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 33/164 (20%), Positives = 59/164 (35%), Gaps = 54/164 (32%)
Query: 421 PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480
V+T+S + V++ + ++ +G PV+D+ L G++ L+ AL
Sbjct: 1 RDVVTVSPDDTVAEALRLMLEHGISGLPVVDD-----------DGRLVGIVTERDLLRAL 49
Query: 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540
EG ++ + + M TV
Sbjct: 50 A----------------------------EGGLDPLVTVGDVM----------TRDVVTV 71
Query: 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
S+ +A L + G+R L VV + G +VGI+TR D+
Sbjct: 72 SPDTSLEEAAELMLEHGIRRLPVV---DDEGR--LVGIVTRSDI 110
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113 |
| >gnl|CDD|234963 PRK01610, PRK01610, putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 39/166 (23%), Positives = 75/166 (45%), Gaps = 29/166 (17%)
Query: 8 IVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQ-WLRYFNNDRDRR 66
+VK + S+ V +G +G+EG ++ + + AS Q R +W+ W
Sbjct: 101 LVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQRF--TPRQEWKLW----------- 147
Query: 67 DLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICT 126
I CG+++G+ +A+ AP+ G LF E +L+ T ++ VV+ A + + T
Sbjct: 148 --IACGAAAGMASAYHAPLAGSLFIAE---------ILFGTLMLASLGPVVISAVVALLT 196
Query: 127 SGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLY 172
+ L ++++V + V D + G++ G+ G L
Sbjct: 197 T---NLLNGSDALLYNV-QLSVTVQARDYALIISTGLLAGLCGPLL 238
|
Length = 418 |
| >gnl|CDD|239654 cd03682, ClC_sycA_like, ClC sycA-like chloride channel proteins | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 5e-04
Identities = 44/161 (27%), Positives = 70/161 (43%), Gaps = 28/161 (17%)
Query: 25 GKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN-NDRDRRDLITCGSSSGVCAAFRA 83
G+EG V +G +A G R F + DRR L+ G ++G A F
Sbjct: 96 GREGTAVQMGGSLADAFG--------------RVFKLPEEDRRILLIAGIAAGFAAVFGT 141
Query: 84 PVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDV 143
P+ G +F+LE + L R +S A++ ++ A + S GL T I+F
Sbjct: 142 PLAGAIFALEVLV-------LGRLRYS-ALIPCLVAAIVADWVSHALGLEHTHYHIVFIP 193
Query: 144 SNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYN 184
+ + + V L GII G+ G L+ +LH + +L
Sbjct: 194 T-----LDPLLFVKVILAGIIFGLAGRLFAELLHFLKKLLK 229
|
This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Length = 378 |
| >gnl|CDD|234987 PRK01862, PRK01862, putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 8e-04
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 13/84 (15%)
Query: 12 IGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITC 71
S+ + +G +G+EGP+V + + ASL+G+ +F+ R R L+ C
Sbjct: 123 ASSLLTIGSGGSIGREGPMVQLAALAASLVGR------------FAHFDPPRLRL-LVAC 169
Query: 72 GSSSGVCAAFRAPVGGVLFSLEEV 95
G+++G+ +A+ AP+ G F E V
Sbjct: 170 GAAAGITSAYNAPIAGAFFVAEIV 193
|
Length = 574 |
| >gnl|CDD|239983 cd04610, CBS_pair_ParBc_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.002
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 423 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVV 455
VIT+S V ++ +++ T H+GFPV+D G V
Sbjct: 4 VITVSPDNTVKDVIKLIKETGHDGFPVVDNGKV 36
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 107 |
| >gnl|CDD|238506 cd01034, EriC_like, ClC chloride channel family | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 30/103 (29%), Positives = 53/103 (51%), Gaps = 3/103 (2%)
Query: 283 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLM 342
F +L + L+++ +P GLF P + +G+ G LL +GS + QG +LG A+ +
Sbjct: 286 FGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAALLGS---VSQGALVLLGMAAFL 342
Query: 343 AGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNP 385
AG + ++ VI +E+T + +L + L+A V P
Sbjct: 343 AGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCP 385
|
These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. Length = 390 |
| >gnl|CDD|201313 pfam00571, CBS, CBS domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.004
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585
TV S+ +A+ L R+ G+ L VV + +VGI+T +DL
Sbjct: 6 TPDVVTVPPDTSLEEALELMRENGISRLPVVDEDGK-----LVGIVTLRDLL 52
|
CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| KOG0474 | 762 | consensus Cl- channel CLC-7 and related proteins ( | 100.0 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 100.0 | |
| KOG0475 | 696 | consensus Cl- channel CLC-3 and related proteins ( | 100.0 | |
| KOG0476 | 931 | consensus Cl- channel CLC-2 and related proteins ( | 100.0 | |
| cd03684 | 445 | ClC_3_like ClC-3-like chloride channel proteins. T | 100.0 | |
| cd03685 | 466 | ClC_6_like ClC-6-like chloride channel proteins. T | 100.0 | |
| PRK01610 | 418 | putative voltage-gated ClC-type chloride channel C | 100.0 | |
| cd03683 | 426 | ClC_1_like ClC-1-like chloride channel proteins. T | 100.0 | |
| cd01036 | 416 | ClC_euk Chloride channel, ClC. These domains are f | 100.0 | |
| PF00654 | 355 | Voltage_CLC: Voltage gated chloride channel Mutati | 100.0 | |
| cd01033 | 388 | ClC_like Putative ClC chloride channel. Clc protei | 100.0 | |
| cd01031 | 402 | EriC ClC chloride channel EriC. This domain is fou | 100.0 | |
| COG0038 | 443 | EriC Chloride channel protein EriC [Inorganic ion | 100.0 | |
| cd01034 | 390 | EriC_like ClC chloride channel family. These prote | 100.0 | |
| PRK05277 | 438 | chloride channel protein; Provisional | 100.0 | |
| cd00400 | 383 | Voltage_gated_ClC CLC voltage-gated chloride chann | 100.0 | |
| cd03682 | 378 | ClC_sycA_like ClC sycA-like chloride channel prote | 100.0 | |
| PRK03655 | 414 | putative ion channel protein; Provisional | 100.0 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 99.74 | |
| PRK01862 | 574 | putative voltage-gated ClC-type chloride channel C | 99.74 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 99.68 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 99.63 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 99.62 | |
| cd00400 | 383 | Voltage_gated_ClC CLC voltage-gated chloride chann | 99.61 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 99.58 | |
| cd01031 | 402 | EriC ClC chloride channel EriC. This domain is fou | 99.57 | |
| PRK05277 | 438 | chloride channel protein; Provisional | 99.57 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 99.54 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 99.51 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 99.49 | |
| PRK01610 | 418 | putative voltage-gated ClC-type chloride channel C | 99.49 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 99.49 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 99.48 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 99.48 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 99.48 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 99.44 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 99.43 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 99.42 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 99.42 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 99.41 | |
| cd03682 | 378 | ClC_sycA_like ClC sycA-like chloride channel prote | 99.41 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 99.41 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 99.4 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 99.4 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 99.4 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 99.39 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 99.39 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 99.38 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 99.38 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 99.37 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 99.37 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 99.37 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 99.37 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 99.37 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 99.37 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 99.36 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 99.36 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 99.36 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 99.36 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 99.36 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 99.35 | |
| cd03685 | 466 | ClC_6_like ClC-6-like chloride channel proteins. T | 99.35 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 99.35 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 99.34 | |
| cd01033 | 388 | ClC_like Putative ClC chloride channel. Clc protei | 99.34 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 99.34 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 99.33 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 99.33 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 99.33 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 99.33 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 99.33 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 99.33 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 99.33 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 99.32 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 99.32 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 99.32 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 99.32 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 99.31 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 99.31 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 99.31 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 99.31 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 99.31 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 99.3 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 99.3 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 99.3 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 99.29 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 99.28 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 99.28 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 99.28 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 99.28 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 99.28 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 99.28 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 99.28 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 99.27 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 99.27 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 99.27 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 99.27 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 99.27 | |
| PRK03655 | 414 | putative ion channel protein; Provisional | 99.26 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 99.26 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 99.26 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 99.26 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 99.25 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 99.25 | |
| cd03683 | 426 | ClC_1_like ClC-1-like chloride channel proteins. T | 99.24 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 99.24 | |
| COG0038 | 443 | EriC Chloride channel protein EriC [Inorganic ion | 99.24 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 99.23 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 99.23 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 99.23 | |
| cd01036 | 416 | ClC_euk Chloride channel, ClC. These domains are f | 99.23 | |
| cd03684 | 445 | ClC_3_like ClC-3-like chloride channel proteins. T | 99.21 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 99.21 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 99.2 | |
| cd01034 | 390 | EriC_like ClC chloride channel family. These prote | 99.18 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 99.18 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 99.17 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 99.15 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 99.15 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 99.11 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 98.98 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 98.98 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.93 | |
| PF00654 | 355 | Voltage_CLC: Voltage gated chloride channel Mutati | 98.88 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 98.74 | |
| KOG1764 | 381 | consensus 5'-AMP-activated protein kinase, gamma s | 98.72 | |
| PF00571 | 57 | CBS: CBS domain CBS domain web page. Mutations in | 98.69 | |
| COG3448 | 382 | CBS-domain-containing membrane protein [Signal tra | 98.63 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 98.57 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 98.51 | |
| KOG0474 | 762 | consensus Cl- channel CLC-7 and related proteins ( | 98.41 | |
| PRK14869 | 546 | putative manganese-dependent inorganic pyrophospha | 98.18 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 98.08 | |
| COG3620 | 187 | Predicted transcriptional regulator with C-termina | 98.03 | |
| TIGR00400 | 449 | mgtE Mg2+ transporter (mgtE). This family of proka | 98.01 | |
| KOG0476 | 931 | consensus Cl- channel CLC-2 and related proteins ( | 97.98 | |
| COG2524 | 294 | Predicted transcriptional regulator, contains C-te | 97.97 | |
| cd04603 | 111 | CBS_pair_KefB_assoc This cd contains two tandem re | 97.78 | |
| cd04597 | 113 | CBS_pair_DRTGG_assoc2 This cd contains two tandem | 97.77 | |
| cd04619 | 114 | CBS_pair_6 The CBS domain, named after human CBS, | 97.66 | |
| cd04618 | 98 | CBS_pair_5 The CBS domain, named after human CBS, | 97.64 | |
| cd04641 | 120 | CBS_pair_28 The CBS domain, named after human CBS, | 97.62 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 97.61 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 97.57 | |
| cd04592 | 133 | CBS_pair_EriC_assoc_euk This cd contains two tande | 97.53 | |
| cd04614 | 96 | CBS_pair_1 The CBS domain, named after human CBS, | 97.47 | |
| PRK10892 | 326 | D-arabinose 5-phosphate isomerase; Provisional | 97.45 | |
| cd04600 | 124 | CBS_pair_HPP_assoc This cd contains two tandem rep | 97.43 | |
| cd04608 | 124 | CBS_pair_PALP_assoc This cd contains two tandem re | 97.42 | |
| cd04607 | 113 | CBS_pair_NTP_transferase_assoc This cd contains tw | 97.42 | |
| PRK11543 | 321 | gutQ D-arabinose 5-phosphate isomerase; Provisiona | 97.39 | |
| cd04620 | 115 | CBS_pair_7 The CBS domain, named after human CBS, | 97.38 | |
| cd04606 | 109 | CBS_pair_Mg_transporter This cd contains two tande | 97.35 | |
| cd04585 | 122 | CBS_pair_ACT_assoc2 This cd contains two tandem re | 97.34 | |
| cd04596 | 108 | CBS_pair_DRTGG_assoc This cd contains two tandem r | 97.33 | |
| cd04605 | 110 | CBS_pair_MET2_assoc This cd contains two tandem re | 97.33 | |
| cd04627 | 123 | CBS_pair_14 The CBS domain, named after human CBS, | 97.32 | |
| cd04615 | 113 | CBS_pair_2 The CBS domain, named after human CBS, | 97.3 | |
| KOG1764 | 381 | consensus 5'-AMP-activated protein kinase, gamma s | 97.28 | |
| cd04625 | 112 | CBS_pair_12 The CBS domain, named after human CBS, | 97.28 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 97.27 | |
| cd04624 | 112 | CBS_pair_11 The CBS domain, named after human CBS, | 97.26 | |
| cd04630 | 114 | CBS_pair_17 The CBS domain, named after human CBS, | 97.25 | |
| cd04582 | 106 | CBS_pair_ABC_OpuCA_assoc This cd contains two tand | 97.24 | |
| cd04604 | 114 | CBS_pair_KpsF_GutQ_assoc This cd contains two tand | 97.24 | |
| cd04803 | 122 | CBS_pair_15 The CBS domain, named after human CBS, | 97.23 | |
| cd04610 | 107 | CBS_pair_ParBc_assoc This cd contains two tandem r | 97.23 | |
| TIGR01137 | 454 | cysta_beta cystathionine beta-synthase. Members of | 97.23 | |
| cd04587 | 113 | CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains | 97.22 | |
| cd04617 | 118 | CBS_pair_4 The CBS domain, named after human CBS, | 97.21 | |
| TIGR00393 | 268 | kpsF KpsF/GutQ family protein. This model describe | 97.2 | |
| TIGR03520 | 408 | GldE gliding motility-associated protein GldE. Mem | 97.19 | |
| smart00116 | 49 | CBS Domain in cystathionine beta-synthase and othe | 97.18 | |
| cd04623 | 113 | CBS_pair_10 The CBS domain, named after human CBS, | 97.18 | |
| cd04613 | 114 | CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two | 97.18 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 97.18 | |
| cd04602 | 114 | CBS_pair_IMPDH_2 This cd contains two tandem repea | 97.17 | |
| cd04621 | 135 | CBS_pair_8 The CBS domain, named after human CBS, | 97.17 | |
| cd04639 | 111 | CBS_pair_26 The CBS domain, named after human CBS, | 97.17 | |
| cd04635 | 122 | CBS_pair_22 The CBS domain, named after human CBS, | 97.16 | |
| cd04643 | 116 | CBS_pair_30 The CBS domain, named after human CBS, | 97.16 | |
| cd04631 | 125 | CBS_pair_18 The CBS domain, named after human CBS, | 97.16 | |
| cd04593 | 115 | CBS_pair_EriC_assoc_bac_arch This cd contains two | 97.16 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 97.15 | |
| cd04583 | 109 | CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan | 97.15 | |
| cd04611 | 111 | CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two | 97.15 | |
| cd04595 | 110 | CBS_pair_DHH_polyA_Pol_assoc This cd contains two | 97.15 | |
| cd04601 | 110 | CBS_pair_IMPDH This cd contains two tandem repeats | 97.13 | |
| cd04586 | 135 | CBS_pair_BON_assoc This cd contains two tandem rep | 97.13 | |
| cd04632 | 128 | CBS_pair_19 The CBS domain, named after human CBS, | 97.12 | |
| PRK15094 | 292 | magnesium/cobalt efflux protein CorC; Provisional | 97.11 | |
| cd04801 | 114 | CBS_pair_M50_like This cd contains two tandem repe | 97.1 | |
| cd04622 | 113 | CBS_pair_9 The CBS domain, named after human CBS, | 97.1 | |
| cd04802 | 112 | CBS_pair_3 The CBS domain, named after human CBS, | 97.09 | |
| cd04588 | 110 | CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains | 97.08 | |
| cd04629 | 114 | CBS_pair_16 The CBS domain, named after human CBS, | 97.05 | |
| cd04642 | 126 | CBS_pair_29 The CBS domain, named after human CBS, | 97.04 | |
| cd04589 | 111 | CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains | 97.02 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 97.01 | |
| cd04612 | 111 | CBS_pair_SpoIVFB_EriC_assoc This cd contains two t | 97.01 | |
| COG0517 | 117 | FOG: CBS domain [General function prediction only] | 96.99 | |
| cd04640 | 126 | CBS_pair_27 The CBS domain, named after human CBS, | 96.98 | |
| cd04590 | 111 | CBS_pair_CorC_HlyC_assoc This cd contains two tand | 96.98 | |
| cd04800 | 111 | CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains | 96.98 | |
| cd02205 | 113 | CBS_pair The CBS domain, named after human CBS, is | 96.98 | |
| cd04636 | 132 | CBS_pair_23 The CBS domain, named after human CBS, | 96.98 | |
| cd04637 | 122 | CBS_pair_24 The CBS domain, named after human CBS, | 96.96 | |
| COG2905 | 610 | Predicted signal-transduction protein containing c | 96.95 | |
| cd04626 | 111 | CBS_pair_13 The CBS domain, named after human CBS, | 96.95 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 96.94 | |
| cd04633 | 121 | CBS_pair_20 The CBS domain, named after human CBS, | 96.94 | |
| cd04599 | 105 | CBS_pair_GGDEF_assoc2 This cd contains two tandem | 96.92 | |
| cd04594 | 104 | CBS_pair_EriC_assoc_archaea This cd contains two t | 96.91 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 96.88 | |
| KOG0475 | 696 | consensus Cl- channel CLC-3 and related proteins ( | 96.86 | |
| cd04584 | 121 | CBS_pair_ACT_assoc This cd contains two tandem rep | 96.81 | |
| cd04609 | 110 | CBS_pair_PALP_assoc2 This cd contains two tandem r | 96.79 | |
| cd04591 | 105 | CBS_pair_EriC_assoc_euk_bac This cd contains two t | 96.76 | |
| COG4109 | 432 | Predicted transcriptional regulator containing CBS | 96.68 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 96.63 | |
| cd04634 | 143 | CBS_pair_21 The CBS domain, named after human CBS, | 96.61 | |
| cd04598 | 119 | CBS_pair_GGDEF_assoc This cd contains two tandem r | 96.55 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 96.54 | |
| cd04638 | 106 | CBS_pair_25 The CBS domain, named after human CBS, | 96.26 | |
| COG2239 | 451 | MgtE Mg/Co/Ni transporter MgtE (contains CBS domai | 96.1 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 95.57 | |
| PRK11573 | 413 | hypothetical protein; Provisional | 95.38 | |
| COG1253 | 429 | TlyC Hemolysins and related proteins containing CB | 94.92 | |
| COG4535 | 293 | CorC Putative Mg2+ and Co2+ transporter CorC [Inor | 94.5 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 94.3 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 93.16 | |
| KOG2118 | 498 | consensus Predicted membrane protein, contains two | 92.81 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 90.26 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 85.52 | |
| COG4536 | 423 | CorB Putative Mg2+ and Co2+ transporter CorB [Inor | 81.19 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 80.18 |
| >KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-102 Score=806.58 Aligned_cols=578 Identities=62% Similarity=1.040 Sum_probs=537.3
Q ss_pred CCccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhh
Q 007394 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAA 80 (605)
Q Consensus 1 ~l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~ 80 (605)
++++||++.|+++++.++++|+.+|||||++|.|+++|+.++|+.|.++++.|+|+|+|||++|||.++.||+|||+||+
T Consensus 183 ivrl~TL~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAA 262 (762)
T KOG0474|consen 183 IVRLRTLIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAA 262 (762)
T ss_pred eeehhhhHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 81 FRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 81 F~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
|+||+||++|++|+.+++|.....||.|+++++++++.+.++..+.+|+++.|+.+.++.|++......|+..|++++++
T Consensus 263 F~APvGGvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~~~i~~~~~G~~g~f~~~GLi~f~vf~~~~~y~~~el~~f~~ 342 (762)
T KOG0474|consen 263 FRAPVGGVLFALEEGASWWNQALLWRTFFSSAIVAFVLRAFILSCLSGKCGLFGKGGLINFDVFDGPVDYHIHELPPFLL 342 (762)
T ss_pred hCCCccceEEEechhhHHHHhhHHHHHHHHhHHHHHhHHHHHHHHhcCchhccCCcceEEecccCCccccccccccceeE
Confidence 99999999999999999999999999999999999999998999999999999999999999876666899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCC-CCCCCCCCCCcc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPE-TCPTNGRSGNFK 239 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~-~~~~~g~~g~~~ 239 (605)
+|+++|++|++||+++.+...++.+ ..+++..+++++++++++++++.|.+|.+..|+|+|.+..+ .||+
T Consensus 343 iGViGGlLGalfN~Ln~~~~~~r~~-~~k~k~~kvlea~~Vs~~ts~~af~l~~l~~C~P~~~~~~~~~~p~-------- 413 (762)
T KOG0474|consen 343 IGVIGGLLGALFNYLNLKKVLRRYN-YEKGKIGKVLEALLVSLVTSVLAFGLPFLADCQPCPPSITEGQCPT-------- 413 (762)
T ss_pred eehhhhhHHHHHHHHHHHHHHHHHh-ccCchHHHHHHHHHHHHHHHHHHhhhHHHhcCCCCCCCcccccCcc--------
Confidence 9999999999999998887777766 45567789999999999999999999999999999976443 5553
Q ss_pred cccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 240 ~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
|+||++.||+++++++++++++++++|+... ++|....|++|++.+++++++|+|...|.|+|.|++.+||+.||++|
T Consensus 414 -f~Cp~~~YNdlAtL~fnt~ddaVrnLFh~~~-~ef~~~tL~iFfv~yf~L~~~TfGi~vpsGlFiP~iL~GAa~GRlvg 491 (762)
T KOG0474|consen 414 -FFCPDGEYNDLATLFFNTNDDAVRNLFHSPT-NEFGILTLAIFFVLYFFLACWTFGIAVPSGLFIPVILTGAAYGRLVG 491 (762)
T ss_pred -ccCCCCchhHHHHHHcCCcHHHHHHHhcCCC-CccchhHHHHHHHHHHHHHHHHhcccccccchhHHHHhhHHHHHHHH
Confidence 7999999999999999999999999999876 89999999999999999999999999999999999999999999999
Q ss_pred HHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHhcCCCC
Q 007394 320 MAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPF 399 (605)
Q Consensus 320 ~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy~~~l~~~g~~~ 399 (605)
.++..+..++|+.||++||||+++|++||++|-+||++|.| +..+++|+|++-++|.+|++.+++++||.+++.+|+|+
T Consensus 492 ~~l~~~~~id~G~yAllGAAa~LGG~mRMTvSL~VIl~E~T-n~~~~lPiMlvLliaK~VGD~FNegiYd~~i~LkgvP~ 570 (762)
T KOG0474|consen 492 MLLGSYTNIDPGLYALLGAAAFLGGVMRMTVSLCVILLELT-NNLLLLPIMLVLLIAKTVGDSFNEGIYDIIIQLKGVPF 570 (762)
T ss_pred HHHHHhhccCchHHHHHhHHHHhCCeEEEEeeeehHHHHhh-hhhhhhHHHHHHHHHHHHHhhhhhhhHHHhhhccCCcc
Confidence 99988889999999999999999999999999999999999 66788899999999999999999999999999999999
Q ss_pred CCCCCCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 400 LDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 400 l~~~~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
++.++++.+++++++|+|++ ++++++..+.+..++++++.++|++|||||+.+. ++.+++.|+|.|+++...
T Consensus 571 Le~~pe~~mr~L~a~ev~~~--pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~------~~~~~l~GlILRshl~vl 642 (762)
T KOG0474|consen 571 LEWEPEPYMRNLTAGEVMSK--PVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPS------NEAGRLHGLILRSHLLVL 642 (762)
T ss_pred ccCCCchHhhhhhHhhhccC--CeEEEechhhHHHHHHHHHhcCcCCCccccCCCC------ccchhhhHHHHHHHHHHH
Confidence 99999999999999999999 9999999999999999999999999999998621 222689999999999999
Q ss_pred HhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCc
Q 007394 480 LKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLR 559 (605)
Q Consensus 480 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~ 559 (605)
|+++.+.++.+........+.++.+|+.++..+++|+.+++++...++|+.++|+++|+++++++++.++..+|++.++|
T Consensus 643 L~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLR 722 (762)
T KOG0474|consen 643 LKKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLR 722 (762)
T ss_pred HHhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcce
Confidence 99988775543333333446788999999889999999999999999999999999999999999999999999999999
Q ss_pred EEEEccccccCCCCceEEEEeHHHhHHHHhhhhCCCcCCcccCC
Q 007394 560 HLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERSKSGQ 603 (605)
Q Consensus 560 ~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~~~~~~~~~~ 603 (605)
|+.||++ .++++|++||+|+.++...+..+...+.+.++
T Consensus 723 hLlVv~~-----~~~~~gilTR~D~~~~~~l~~~~~v~~~~~~~ 761 (762)
T KOG0474|consen 723 HLLVVPK-----TNRVVGILTRKDLARYRILGLEPHVDELKMGK 761 (762)
T ss_pred eEEEecC-----CCceeEEEehhhhhhHHHhccccccccccccc
Confidence 9999998 78899999999999888878888777666553
|
|
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-71 Score=618.37 Aligned_cols=456 Identities=19% Similarity=0.287 Sum_probs=385.1
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| |+++ +++++|.+++||+|||+||+|
T Consensus 113 ~~~~~~~~k~~~~~l~i~~G~s~G~EgP~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~G~aAglaa~F 179 (574)
T PRK01862 113 VPVRQSLWRSASSLLTIGSGGSIGREGPMVQLAALAASLVGR-----------FAHF--DPPRLRLLVACGAAAGITSAY 179 (574)
T ss_pred CChHHHHHHHHHHHHHHHcCCCcCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 578899999999999999999999999999999999999998 5554 567889999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|+++++++.+.++++++++++++.+.+.+ +|+++ .|.++ ..+.++..++++++++
T Consensus 180 ~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~~~~~-~~~~~~~~~~~~~~~l 245 (574)
T PRK01862 180 NAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMREF-----------AGYQP--PYEMP-VFPAVTGWEVLLFVAL 245 (574)
T ss_pred CCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeeCC-CcCcCCHHHHHHHHHH
Confidence 9999999999999999999999999999998888887753 45555 45665 3456888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++.++++++++++. ++++...++|++++++.+++|++ .|.
T Consensus 246 Gv~~G~~~~~f~~~~~~~~~~~~~~~~----~~~~~~~~~gl~~g~l~~~~p~~----------------~g~------- 298 (574)
T PRK01862 246 GVLCGAAAPQFLRLLDASKNQFKRLPV----PLPVRLALGGLLVGVISVWVPEV----------------WGN------- 298 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCC----chhHHHHHHHHHHHHHHHHHHHH----------------hcC-------
Confidence 999999999999999999988876532 22334456778888888888876 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+. ++++++ +...+..++.+++.|+++|++|+|+|+|||.|+|++++||++|+++|++
T Consensus 299 -----G~~~------------i~~~~~----~~~~~~~l~~~~~~K~~~t~~t~g~G~~GG~f~P~l~iGa~~G~~~g~~ 357 (574)
T PRK01862 299 -----GYSV------------VNTILH----APWTWQALVAVLVAKLIATAATAGSGAVGGVFTPTLFVGAVVGSLFGLA 357 (574)
T ss_pred -----CHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHccCCCccchhhHHHHHHHHHHHHHHH
Confidence 2332 233332 2344556677888999999999999999999999999999999999998
Q ss_pred hhccc---CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHhcCC
Q 007394 322 MGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKGL 397 (605)
Q Consensus 322 ~~~~~---~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~~g~ 397 (605)
++... ...|..|+++||+|++++++|+|+|++++++|+|+++++++|+++++++|+.+++.+ ++++|+.++++++.
T Consensus 358 ~~~~~~~~~~~~~~~a~vGmaa~~aa~~~aPlt~i~l~~Elt~~~~~~~P~~ia~~~a~~v~~~~~~~~iy~~~~~~~~~ 437 (574)
T PRK01862 358 MHALWPGHTSAPFAYAMVGMGAFLAGATQAPLMAILMIFEMTLSYQVVLPLMVSCVVAYFTARALGTTSMYEITLRRHQD 437 (574)
T ss_pred HHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHhccc
Confidence 86532 235678999999999999999999999999999999999999999999999999988 78999999998754
Q ss_pred CCCCCCCCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 398 PFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 398 ~~l~~~~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
+.+.+.+++++++|+|++ +..+++++++++|+.+.+.+++.+.+||+|++ ++++|+++.+|+.
T Consensus 438 ----~~~~~~L~~~~V~dim~~--~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~-----------g~lvGiVt~~dL~ 500 (574)
T PRK01862 438 ----EAERERLRTTQMRELIQP--AQTVVPPTASVADMTRVFLEYPVKYLYVVDDD-----------GRFRGAVALKDIT 500 (574)
T ss_pred ----cchhhHHhhCcHHHHhcC--CCceeCCCCCHHHHHHHHHhCCCceEEEEcCC-----------CeEEEEEEHHHHH
Confidence 335567889999999998 88899999999999999999999999999987 8999999999997
Q ss_pred HHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcC
Q 007394 478 LALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVG 557 (605)
Q Consensus 478 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~ 557 (605)
+.+.+... ....+++|+|++++.++++|++++|++++|.+++
T Consensus 501 ~~l~~~~~--------------------------------------~~~~~v~dim~~~~~~v~~d~~L~~al~~m~~~~ 542 (574)
T PRK01862 501 SDLLDKRD--------------------------------------TTDKTAADYAHTPFPLLTPDMPLGDALEHFMAFQ 542 (574)
T ss_pred HHhhcccc--------------------------------------cccchHHHhccCCCeeECCCCCHHHHHHHHHhcC
Confidence 64322110 0012467788899999999999999999999999
Q ss_pred CcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 558 LRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 558 ~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.+++||+|+ +++++++|+||++|+++++.+
T Consensus 543 ~~~lpVVd~---~~~~~liGvIt~~DIl~~l~~ 572 (574)
T PRK01862 543 GERLPVVES---EASPTLAGVVYKTSLLDAYRR 572 (574)
T ss_pred CCeeeeEeC---CCCCeEEEEEEHHHHHHHHHh
Confidence 999999987 112589999999999998765
|
|
| >KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-71 Score=573.98 Aligned_cols=492 Identities=30% Similarity=0.545 Sum_probs=397.9
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhh-ccCChhhhHHHHHHhHhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLR-YFNNDRDRRDLITCGSSSGVCAA 80 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~r~l~~~g~aagiaa~ 80 (605)
++.+|++.|.++.++++++|+|+|||||+||++.++|+.+.+ +++ +.+++..+|+++++++|||+|++
T Consensus 176 lg~~tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~-----------~f~~~~~~e~~~reilsAaaAaGvava 244 (696)
T KOG0475|consen 176 LGKWTLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSK-----------IFPKYRLNEAKKREILSAAAAAGVAVA 244 (696)
T ss_pred hhHHHHhhhhhhheeeeccccccCCCCCceeeeechhhhHhh-----------hhhhhccchhHHHHHHHHHhhccchhh
Confidence 567899999999999999999999999999999999999998 433 33477889999999999999999
Q ss_pred hccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 81 FRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 81 F~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
||||+||++|++|++..+|+.+.+|+.|+++.+|+.+.+.+ ..|+++...+|.+. ...+|+..|+++|++
T Consensus 245 FgAPIGGVlFslEev~~~fp~ktlw~sff~aLsAv~~L~~i---------~pf~~~~~vLf~V~-Y~~~W~~~EL~pFi~ 314 (696)
T KOG0475|consen 245 FGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALSAVTALRSI---------NPFGNSRLVLFYVD-YDRPWSLFELLPFIL 314 (696)
T ss_pred cCCccceeeeehhhhhhcCCccchHHHHHHHHHHHHHHeee---------cccCCCceEEEEEe-ccCCcccccchHHHH
Confidence 99999999999999998899999999999999998888865 57888877788876 468899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
+|++||+.|.+|.|++.++.++++.. +...++++++.+++++|++++++.|+++.-.
T Consensus 315 LGifgGl~G~~~ir~n~~~~~~rK~~--~lg~~pv~ev~~vt~iTaiIs~~np~~r~~~--------------------- 371 (696)
T KOG0475|consen 315 LGIFGGLWGAFFIRLNIRFCRFRKSS--KLGKFPVLEVVFVTLVTAIISLFNPETRFNM--------------------- 371 (696)
T ss_pred HHHhhhHHHHHHHHHHHHHHhccchh--hccCCcchhHHHHHHHHHHHHhcCHHHHhhH---------------------
Confidence 99999999999999999999988765 2345789999999999999999999983100
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCCCC--------C-Cc-chhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTP--------T-EF-QPSSILIFFILYCILGLITFGIAVPSGLFLPIILM 310 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~--------~-~~-~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~i 310 (605)
.. .+..+|+.... . -+ ....|+...++|+++|++|+|++.|+|.|.||+.+
T Consensus 372 -------~e------------~i~~Lf~~C~~~~s~~l~~~~~~~~~~~L~~a~i~k~~~t~ftfGakvP~GifvPSmai 432 (696)
T KOG0475|consen 372 -------SE------------LITILFNKCSPSSSTSLPETTVYSAAILLLLALILKIALTIFTFGAKVPAGIFVPSLAI 432 (696)
T ss_pred -------HH------------HHHHHHhhcCCcccccCcccchHHHHHHHHHHHHHHHHHHHhhhhccCccceecchHHH
Confidence 00 01111111110 0 01 13456677789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc-----------cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Q 007394 311 GSAYGRLLGMAMGSY-----------TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTV 379 (605)
Q Consensus 311 Ga~~G~~~g~~~~~~-----------~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v 379 (605)
||++|+++|.+..+. ..+.|+.|+++||||.++|++|+|+|.+||++|+||++.+++|+|+|+.+|.++
T Consensus 433 GA~aGr~vG~~~e~l~~~~~~~~fg~~ci~Pg~Ya~vGaAA~LsGvtrltvtlVVImFELTG~l~~IlPlm~av~~SkwI 512 (696)
T KOG0475|consen 433 GAIAGRAVGIIVEQLAQNPDFNLFGLSCATPGAYALVGAAATLSGVTRLTVTLVVIMFELTGALNYILPLMLAVMISKWI 512 (696)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccchhhcCchHHHHHHHHHHhcCcceeeEEEEEEeeeccCcceeHHHHHHHHHHHHHH
Confidence 999999999665541 246799999999999999999999999999999999999999999999999999
Q ss_pred Hhhc-CCcHHHHHHHhcCCCCCCCCCCccccccccccccccC---CCeeEEcCc-ccHHHHHHHHhcCCCCeeeeecCCC
Q 007394 380 GDSF-NPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAK---PPVITLSGI-EKVSQIVDVLRNTTHNGFPVLDEGV 454 (605)
Q Consensus 380 ~~~l-~~~iy~~~l~~~g~~~l~~~~~~~l~~~~v~diM~~~---~~v~~v~~~-~tl~~a~~~l~~~~~~~~PVvd~~~ 454 (605)
++.+ ...+||.+++.+|+|+++.+++.. +--..++|.++ +...++..+ ++++|...+|++++++++||+-++
T Consensus 513 ~d~~gk~gIyda~I~~ng~P~l~~k~e~~--~t~~~~v~~p~~~~~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~- 589 (696)
T KOG0475|consen 513 GDGLGKTGIYDAHIELNGYPFLDSKSEFS--STLAIPVMEPCRSESCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSE- 589 (696)
T ss_pred HhccccchHHHHHHHhcCCCCcccccccc--cchhhhhhchhcCchhheeccccceeHHHHHHHHhhcccCCceEEEcc-
Confidence 9999 667999999999999997665433 33345566552 124555444 899999999999999999998664
Q ss_pred CCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccc
Q 007394 455 VPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN 534 (605)
Q Consensus 455 ~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~ 534 (605)
++.+++|+|.++|+...+.+.....+-..+ .+. .+.++.. + ........++++++|+
T Consensus 590 --------~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~------~~~---~f~~~~~---~---~~~~~~~~~~lk~il~ 646 (696)
T KOG0475|consen 590 --------DSQRLVGFVLRRNLFLAILNARKIQSFIVT------TSI---YFNDPSP---S---AVAGIPSRLDLKDILD 646 (696)
T ss_pred --------ccceeEEEEchHHHHHHHhhhcccccccee------ccc---ccCCCCc---c---ccCCCCCCcCceeecc
Confidence 458999999999998766642211110000 000 1111100 0 0011223478999999
Q ss_pred cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 535 ~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
..|+++.+++|.+-++++|++.+++++.|.++ |++.|+||++|+++..
T Consensus 647 ~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~~------G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 647 MTPFTVTDLTPMETVVDLFRKLGLRQILVTKN------GILLGIITKKDCLRHT 694 (696)
T ss_pred CCcccccccCcHHHHHHHHHhhCceEEEEccC------CeeEeeeehHHHHHhh
Confidence 99999999999999999999999999998765 9999999999999864
|
|
| >KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-66 Score=545.98 Aligned_cols=534 Identities=27% Similarity=0.450 Sum_probs=402.6
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
|+.||+++|.++..+++|+|+++|||||+|||++.+++.++|.. .+.....|+|+.++.+++++|||.|+|+.|
T Consensus 186 Lt~KtlvAKviGLT~tLGsGlpiGKeGPFVHiasivA~~l~k~~------a~~~~g~~enesR~~EmLaaaCAVGVactF 259 (931)
T KOG0476|consen 186 LTLKTLVAKVIGLTLTLGSGLPIGKEGPFVHIASIVAALLSKVT------ACQFGGFFENESRNMEMLAAACAVGVACTF 259 (931)
T ss_pred hhHHHHHHHHHHhhhhhccCCCcCCCCCchhHHHHHHHHHHHHH------HhhccccccCcchHHHHHHHHhhhhheeee
Confidence 78999999999999999999999999999999999999998721 223556677888899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeecc-CCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSN-VPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~-~~~~~~~~~l~~~il 160 (605)
.||+||+||++|+++++|.+++|||.||+++++|+++|.+..|+...... -...|+.++ .+.+|+++|+|+|++
T Consensus 260 sAPiGgVLfSIEvTS~yFAVrnYWRGFFAAtcsA~vFR~lavf~v~~~~t-----ItA~yqT~F~~d~~F~~~ELp~Fal 334 (931)
T KOG0476|consen 260 SAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCSAFVFRLLAVFFVEAEVT-----ITALYQTSFRPDFPFDVQELPFFAL 334 (931)
T ss_pred cCccceeEEEEEEeeeeeeHHHHHHHHHHHHhHHHHHHHHHHHcccchhh-----hHHHHhccCCCCCCCCHHHhHHHHH
Confidence 99999999999999999999999999999999999999987665411000 011334443 334899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCC--C
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNL---INQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGR--S 235 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~--~ 235 (605)
||++||++|++|+++.+++.-+.++ .+....+++++.+++++++++.+.|. .- .|. +
T Consensus 335 lGl~cGllGa~fVylhR~ivlf~Rkn~~~~~~f~k~~llyp~~~a~v~ssltfP--~G----------------lG~f~a 396 (931)
T KOG0476|consen 335 LGLLCGLLGALFVYLHRRIVLFLRKNRYAKKLFQKSRLLYPAFIALVFSSLTFP--PG----------------LGQFLA 396 (931)
T ss_pred HHHHHhcccceeeeeeeeeeeeehhhHHHHHHHhhCccHHHHHHHHHHhheecC--Cc----------------cccccc
Confidence 9999999999999988875544321 22223456788898888888877653 11 111 1
Q ss_pred CCcccccCCCCCchhhHHHhhcCc------h-----hHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccch
Q 007394 236 GNFKQFNCPNGHYNDLATLLLTTN------D-----DAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLF 304 (605)
Q Consensus 236 g~~~~~~~~~~~y~~~~~~~~~~~------~-----~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f 304 (605)
|.+. .-+.+.+++.|-. + ..+-.-|.......-.+..|++|.+.||+++.++....+|.|.|
T Consensus 397 G~l~-------f~etl~~fF~Nctw~~~~~~~~~~~~~~~~hW~~p~g~~~~f~tL~lf~l~~F~~siia~TipvPsG~F 469 (931)
T KOG0476|consen 397 GRLS-------FRETLVDFFDNCTWWVQTNDSELCPAHILTHWYHPEGDVSIFGTLVLFFLMYFWMSIIATTIPVPSGVF 469 (931)
T ss_pred cccc-------HHhHHHHHhhcCeeeecCCCcCCCChhhhhhhcCCCCceeeHHHHHHHHHHHHHHHHHHhccccCccce
Confidence 1100 0011222111100 0 00111111111112234578999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhc-----------ccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHH
Q 007394 305 LPIILMGSAYGRLLGMAMGS-----------YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVL 373 (605)
Q Consensus 305 ~Psl~iGa~~G~~~g~~~~~-----------~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~ 373 (605)
+|.++|||++||++|+.+.. ...+.|+.||++|+|||-++++ .++|.+||++|+||+...++|+|+|+
T Consensus 470 mPvFViGAafGRlvGE~m~~lfP~Gi~~~gi~~~I~PG~YAVVGAAAfsGaVT-HTvSvAVIifElTGQl~hiLPVmIAV 548 (931)
T KOG0476|consen 470 MPVFVIGAAFGRLVGEIMAVLFPEGIRGGGITPPIHPGGYAVVGAAAFSGAVT-HTVSVAVIIFELTGQLCHILPVMIAV 548 (931)
T ss_pred eeeeeechhhhhhhhhhheeecccccccCCccCccccchhhhhhhhhhcccee-eeeeEEEEEEeeccchHHHHHHHHHH
Confidence 99999999999999976543 1357899999999999866655 59999999999999999999999999
Q ss_pred HHHHHHHhhcCCcHHHHHHHhcCCCCCCCCCC--ccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeec
Q 007394 374 LIAKTVGDSFNPSIYEIILELKGLPFLDAHPE--PWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLD 451 (605)
Q Consensus 374 ~~a~~v~~~l~~~iy~~~l~~~g~~~l~~~~~--~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd 451 (605)
++|+.|..++..++||..++.|++||++..+. ...+++.|+|+|.+ |+..+..++|.+|+.+.+..+..+.+|+||
T Consensus 549 llaNAVa~~LQPSiYDSII~IKklPYLPDlpps~~~~h~v~VE~iMV~--dv~yI~k~~Ty~elre~l~~~~lR~~PlV~ 626 (931)
T KOG0476|consen 549 LLANAVAASLQPSIYDSIIRIKKLPYLPDLPPSRSSVHTVKVEHIMVT--DVKYITKDTTYRELREALQTTTLRSFPLVE 626 (931)
T ss_pred HHHHHHHHHhCcchhhheeeeccCCcCCCCCCcccceeEEEeeeeccc--cceeeeccCcHHHHHHHHHhCccceecccc
Confidence 99999999999999999999999999987643 34678899999999 999999999999999999888799999999
Q ss_pred CCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchh--------------------HHHh-------------
Q 007394 452 EGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE--------------------WEVR------------- 498 (605)
Q Consensus 452 ~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~--------------------~~~~------------- 498 (605)
+. |+..|+|.|.|++|..++.++. ..+++..+. ++..
T Consensus 627 s~---------esmiLlGSV~R~~L~~ll~~~i-g~~~r~~~a~~r~r~~~E~~~~~~~~~~~ee~~~r~p~~~~~~~~~ 696 (931)
T KOG0476|consen 627 SK---------ESMILLGSVARRYLTALLQRHI-GPEPRLVEAQKRVRTASEIFLTIFERSKKEEPPRRSPSRSEFFTMQ 696 (931)
T ss_pred Cc---------ccceeeehhHHHHHHHHHHhhc-CccHhHHHHHHHhhhhhhchhhhhhhhhccCCCCCCcccccccccc
Confidence 86 6789999999999999887522 111110000 0000
Q ss_pred --h---h---------cchhHh--------hh-h--c--------------C----------------------------
Q 007394 499 --E---K---------FSWVEL--------AE-R--E--------------G---------------------------- 511 (605)
Q Consensus 499 --~---~---------~~~~~~--------~~-~--~--------------~---------------------------- 511 (605)
+ . ....+- .. + . .
T Consensus 697 ~e~s~~~~~~~et~kp~~p~~~~~p~~~~~lt~~~~sG~~~~~~~s~~~~~~~~~~p~~~~~~l~~~~~r~~~~~~~~~~ 776 (931)
T KOG0476|consen 697 RENSDIVTALGETAKPLPPSEQRLPSVVENLTPRTISGTRENALLSLRDMESPLHGPAAEHHPLHKLLTRQTKVNNKKQS 776 (931)
T ss_pred ccccccccccccccCCCCchhccCccccccccccccCCccccccccccccccCCCCCccccccccccccccccccccccc
Confidence 0 0 000000 00 0 0 0
Q ss_pred ---cccc------cccChhhhhhhcccccc-cccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 512 ---KIEE------VAVTSEEMEMYIDLHPL-TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 512 ---~~~~------~~~~~~~~~~~~~v~~i-m~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
+..+ .+..+....+.++.++. +++.|+.+.+.+||.|++.+|...++++..|.+. ||++|+|..
T Consensus 777 ~~~~~~d~~~eei~~we~~~l~~~ld~~~~~IDpaPfQLve~TSL~K~HtLFSLLgL~~AYVT~~------GrLvGVVal 850 (931)
T KOG0476|consen 777 HDDNEYDLSAEEIKEWEEEQLSQKLDLDECAIDPAPFQLVEGTSLYKVHTLFSLLGLNHAYVTSC------GRLVGVVAL 850 (931)
T ss_pred ccccccccChhhhhHHHHHHhccccchhhCCCCCCceeeeccchHHHHHHHHHHhccchhhhccc------CcEEEEEEH
Confidence 0000 00112233445666666 7889999999999999999999999999999986 999999999
Q ss_pred HHhHHHHhh
Q 007394 582 QDLRAFNIL 590 (605)
Q Consensus 582 ~Dll~~~~~ 590 (605)
+|+.++..+
T Consensus 851 kELRkAie~ 859 (931)
T KOG0476|consen 851 KELRKAIEN 859 (931)
T ss_pred HHHHHHHHh
Confidence 999998876
|
|
| >cd03684 ClC_3_like ClC-3-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-58 Score=495.38 Aligned_cols=347 Identities=35% Similarity=0.641 Sum_probs=282.4
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhcc-CChhhhHHHHHHhHhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYF-NNDRDRRDLITCGSSSGVCAA 80 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~-~~~~~~r~l~~~g~aagiaa~ 80 (605)
+++|+++.|++++++++++|+|+|||||++|+|+++|++++| |++.+ .++++||++++||+|||++|+
T Consensus 74 ~~~~~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~~-----------~~~~~~~~~~~~r~li~~GaaAGlaAa 142 (445)
T cd03684 74 LGKWTLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIISR-----------LFPKYRRNEAKRREILSAAAAAGVAVA 142 (445)
T ss_pred ccHHHHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHHH-----------HHHHhccCHHHHHHHHHHHHhhhhHHh
Confidence 678999999999999999999999999999999999999998 44432 377899999999999999999
Q ss_pred hccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 81 FRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 81 F~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
||||++|++|++|++.++++.+.+|++++++++++++.+.+ ..|+.++...|+++. ...+++.+++++++
T Consensus 143 F~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~---------~~~~~~~~~~f~~~~-~~~~~~~~l~~~i~ 212 (445)
T cd03684 143 FGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL---------NPFGTGRLVLFEVEY-DRDWHYFELIPFIL 212 (445)
T ss_pred cCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh---------cccCCCCceEEeccC-CCCccHHHHHHHHH
Confidence 99999999999999999999999999999999999888765 234444444565542 35678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
+|++||++|.+|++++.++++++++.+. ..++++.+.+++++++++.++.|+.. +.
T Consensus 213 lGi~~Gl~g~lf~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~~l~~~~p~~~----------------~~------ 268 (445)
T cd03684 213 LGIFGGLYGAFFIKANIKWARFRKKSLL--KRYPVLEVLLVALITALISFPNPYTR----------------LD------ 268 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHc----------------cc------
Confidence 9999999999999999999999887641 23466777888899999998888861 11
Q ss_pred ccCCCCCchhhHHHhhcCchh-----HHHhhhcCCCCCC-cchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDD-----AVRNIFSSNTPTE-FQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAY 314 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~-----~i~~~~~~~~~~~-~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~ 314 (605)
+++.+..+ +++.+. ............. .....++++++.|+++|++|+|+|+|||.|+|++++||++
T Consensus 269 ------g~~~i~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~K~~~t~lt~gsG~~GG~f~P~l~iGA~~ 341 (445)
T cd03684 269 ------MTELLELL-FNECEPGDDNSLCCYRDPPAGDGVYKALWSLLLALIIKLLLTIFTFGIKVPAGIFVPSMAVGALF 341 (445)
T ss_pred ------hhhHHHHH-HhcCCCcccccccccccccCCccchhHHHHHHHHHHHHHHHHHHHHcCCCCcceeHHHHHHHHHH
Confidence 11111111 110000 0000000000011 1345567778999999999999999999999999999999
Q ss_pred HHHHHHHhhcc-----------------cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 007394 315 GRLLGMAMGSY-----------------TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK 377 (605)
Q Consensus 315 G~~~g~~~~~~-----------------~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~ 377 (605)
|+++|.+++.. ...+|+.|+++||+|++++++|+|+|++++++|+||++++++|+++++++||
T Consensus 342 G~~~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~alvGmaa~~a~~~raPlt~ivlv~ElTg~~~~l~pl~ia~~iA~ 421 (445)
T cd03684 342 GRIVGILVEQLAYSYPDSIFFACCTAGPSCITPGLYAMVGAAAFLGGVTRMTVSLVVIMFELTGALNYILPLMIAVMVSK 421 (445)
T ss_pred hHHHHHHHHHHHhhCCcccccccccCCCCccCchHHHHHHHHHHhcchhccchhhhheeeeccCCcccHHHHHHHHHHHH
Confidence 99999998642 1367899999999999999999999999999999999999999999999999
Q ss_pred HHHhhc-CCcHHHHHHHhcCCCCC
Q 007394 378 TVGDSF-NPSIYEIILELKGLPFL 400 (605)
Q Consensus 378 ~v~~~l-~~~iy~~~l~~~g~~~l 400 (605)
.+++.+ .+++||.+++.||+||+
T Consensus 422 ~vs~~~~~~siY~~~l~~~g~p~l 445 (445)
T cd03684 422 WVADAIGKEGIYDAHIHLNGYPFL 445 (445)
T ss_pred HHHHHhCCCCHHHHHHHhcCCCCC
Confidence 999999 68999999999999985
|
This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn |
| >cd03685 ClC_6_like ClC-6-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-57 Score=490.47 Aligned_cols=336 Identities=60% Similarity=1.070 Sum_probs=286.7
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+++.|++++++++++|+|+|||||++|+||++|++++|..++.++++++++++++++++||++++||+|||+|++|
T Consensus 124 l~~r~~~~K~i~~~l~vgsG~s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF 203 (466)
T cd03685 124 LRLKTLLVKIVGVILSVSGGLALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAF 203 (466)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhcc
Confidence 57899999999999999999999999999999999999999865555666667888877889999999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.++|+.+.+|+.++++.+++++.+.+.......+...|+++....|........+++.++++++++
T Consensus 204 ~APl~G~lFa~E~l~~~~~~~~~~~~l~~s~ias~va~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ill 283 (466)
T cd03685 204 GAPVGGVLFSLEEVASFWNQALTWRTFFSSMIVTFTLNFFLSGCNSGKCGLFGPGGLIMFDGSSTKYLYTYFELIPFMLI 283 (466)
T ss_pred CCCcceeeeeeehhhhhcchhHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCccceecccccCCCCccHHHHHHHHHH
Confidence 99999999999999999999999999999999999888765543322233454333334444333456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++.++++++++.+...++.|++.+++++++++++.+
T Consensus 284 Gi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~lv~~~~~~~~~------------------------------- 332 (466)
T cd03685 284 GVIGGLLGALFNHLNHKVTRFRKRINHKGKLLKVLEALLVSLVTSVVAF------------------------------- 332 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHH-------------------------------
Confidence 9999999999999999999988876533455567777766666554321
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
...+++++++|+++|++|+|+|+|||+|+|++++||++|+++|.+
T Consensus 333 -----------------------------------~~~l~~~~~~k~l~t~lt~gsG~~GGif~Psl~iGA~~G~~~g~~ 377 (466)
T cd03685 333 -----------------------------------PQTLLIFFVLYYFLACWTFGIAVPSGLFIPMILIGAAYGRLVGIL 377 (466)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHHHHH
Confidence 122455667899999999999999999999999999999999998
Q ss_pred hhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHhcCCC
Q 007394 322 MGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLP 398 (605)
Q Consensus 322 ~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy~~~l~~~g~~ 398 (605)
++.. ...+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+.+++.+++++||.+++.||+|
T Consensus 378 ~~~~~~~~~~~~~~~aliGmaa~lag~~raPlt~iviv~ElTg~~~~l~pl~ia~~iA~~va~~~~~siY~~~l~~~g~p 457 (466)
T cd03685 378 LGSYFGFTSIDPGLYALLGAAAFLGGVMRMTVSLTVILLELTNNLTYLPPIMLVLMIAKWVGDYFNEGIYDIIIQLKGVP 457 (466)
T ss_pred HHHHccccCCCchHHHHHHHHHHHhHHhhhhHHHHHHhhhhcCChhhHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCCc
Confidence 7653 3578999999999999999999999999999999999999999999999999999999899999999999999
Q ss_pred CCCCC
Q 007394 399 FLDAH 403 (605)
Q Consensus 399 ~l~~~ 403 (605)
++++.
T Consensus 458 ~l~~~ 462 (466)
T cd03685 458 FLHNG 462 (466)
T ss_pred cccCC
Confidence 99764
|
This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. |
| >PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-53 Score=453.24 Aligned_cols=319 Identities=22% Similarity=0.351 Sum_probs=266.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| |++ ++++||.+++||+|||+|++|
T Consensus 95 ~~~~~~~~k~~~~~l~igsG~S~GrEGP~v~iGa~~g~~~~~-----------~~~---~~~~~r~li~~GaaAGlaa~F 160 (418)
T PRK01610 95 FDYAASLVKSLASLLVVTSGSAIGREGAMILLAALAASCFAQ-----------RFT---PRQEWKLWIACGAAAGMASAY 160 (418)
T ss_pred CCccHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH-----------HhC---ChHHHHHHHHHHHHHHHHHHh
Confidence 678999999999999999999999999999999999999998 444 467899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.++++.+.+.++++++++++.+.+.+ ++.++ ..|+++ ....+++.++++++++
T Consensus 161 ~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v~~~~-----------~g~~~-~~~~i~-~~~~~~~~~l~~~i~l 227 (418)
T PRK01610 161 HAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLTTNLL-----------NGSDA-LLYNVQ-LSVTVQARDYALIIST 227 (418)
T ss_pred CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-----------cCCCC-CeeecC-CcCCCCHHHHHHHHHH
Confidence 9999999999999998888888888888888777776643 34322 145665 2456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++++.++++++++. ++++.+.+++++++++++++|++ .|.
T Consensus 228 Gii~Gl~g~~f~~~~~~~~~~~~~~~~----~~~~~~~lggli~g~l~~~~p~~----------------~G~------- 280 (418)
T PRK01610 228 GLLAGLCGPLLLTLMNASHRGFVSLKL----APPWQLALGGLIVGLLSLFTPAV----------------WGN------- 280 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccc----chhHHHHHHHHHHHHHHHHhhHH----------------hCC-------
Confidence 999999999999999999988876542 23344567788888888888876 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+.+ +..++ .++.+..++.+++.|+++|++|+|+|++||.|+|++++||++|.++|++
T Consensus 281 -----G~~~i------------~~~~~----~~~~~~~l~~l~l~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~ 339 (418)
T PRK01610 281 -----GYSVV------------QSFLT----APPLLMLIAGIFLCKLLAVLASSGSGAPGGVFTPTLFVGLAIGMLYGRS 339 (418)
T ss_pred -----cHHHH------------HHHHc----CChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 24322 22221 2234445666778999999999999999999999999999999999999
Q ss_pred hhcc-c--CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHhc
Q 007394 322 MGSY-T--NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK 395 (605)
Q Consensus 322 ~~~~-~--~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~~ 395 (605)
++.. + ...+..|+++||+|++++++|+|+|++++++|+||++++++|+++++++|+.+++.+ ++++|+.++..+
T Consensus 340 ~~~~~~~~~~~~~~~a~vGmaA~laa~~~aPltaivl~~Eltg~~~~~~p~~ia~~ia~~vs~~~~~~siy~~~~~~~ 417 (418)
T PRK01610 340 LGLWLPDGEEITLLLGLTGMATLLAATTHAPIMSTLMICEMTGEYQLLPGLLIACVIASVISRTLRRDSIYRQHTAEH 417 (418)
T ss_pred HHHhCCCcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCCchHHHHhcc
Confidence 8753 1 233688999999999999999999999999999999999999999999999999988 899999998764
|
|
| >cd03683 ClC_1_like ClC-1-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-54 Score=460.76 Aligned_cols=321 Identities=32% Similarity=0.575 Sum_probs=264.8
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+++.|++++++++++|+|+|||||++|+|+++++.++| .++.+ .. .++++.+||++++||+|||+||+|
T Consensus 91 l~~r~~~~k~i~~~l~i~sG~svGrEGP~v~iGa~i~~~~~~----~~~~~--~~-~~~~~~~rr~Li~~GaaAGlaAaF 163 (426)
T cd03683 91 LTFKTLVAKVIGLTCALGSGLPLGKEGPFVHISSIVAALLSK----LTTFF--SG-IYENESRRMEMLAAACAVGVACTF 163 (426)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHh----hcccc--cc-cccCHHHHHHHHHhHhhhhhHHhc
Confidence 578999999999999999999999999999999999999998 22210 00 023677889999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCce-eEEeec-cCCcccchhhHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGL-IMFDVS-NVPVRYHVMDIIPVT 159 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~-~~f~~~-~~~~~~~~~~l~~~i 159 (605)
|||++|++|++|++.++|+.+.+|++++++++++++.+.+..+.. +..+. ..|... .....++..++++++
T Consensus 164 ~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~v~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~l~~~i 236 (426)
T cd03683 164 GAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAFTFRLLAVFFS-------DQETITALFKTTFFVDFPFDVQELPIFA 236 (426)
T ss_pred CCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHHHHHHHHhhcC-------CCccccccccccccCCCCCcHHHHHHHH
Confidence 999999999999999999999999999999999888876543211 11110 012111 123467889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCC
Q 007394 160 LIGIIGGILGGLYNHILHKVLRLYNLINQ---KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSG 236 (605)
Q Consensus 160 llgi~~gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g 236 (605)
++|++||++|.+|++++.++.+++++.+. ..+..+++.+++++++++++.+ |
T Consensus 237 ~lGv~~Gl~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~--p----------------------- 291 (426)
T cd03683 237 LLGIICGLLGALFVFLHRKIVRFRRKNRLFSKFLKRSPLLYPAIVALLTAVLTF--P----------------------- 291 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHH--H-----------------------
Confidence 99999999999999999999988765432 1233567777777777664321 1
Q ss_pred CcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHH
Q 007394 237 NFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGR 316 (605)
Q Consensus 237 ~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~ 316 (605)
+..++++++.|+++|++|+|+|+|||.|+|++++||++|+
T Consensus 292 ----------------------------------------~~~l~~~~~~K~~~t~~t~gsG~~GGif~Psl~iGa~~G~ 331 (426)
T cd03683 292 ----------------------------------------FLTLFLFIVVKFVLTALAITLPVPAGIFMPVFVIGAALGR 331 (426)
T ss_pred ----------------------------------------HHHHHHHHHHHHHHHHHHHhCCCChhhhHHHHHHHHHHHH
Confidence 1235667789999999999999999999999999999999
Q ss_pred HHHHHhhccc----------CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCc
Q 007394 317 LLGMAMGSYT----------NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPS 386 (605)
Q Consensus 317 ~~g~~~~~~~----------~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~ 386 (605)
++|.+++... ..+|..|+++||+|++++++|+|.++ ++++|+||++++++|+++++++|+.+++.++++
T Consensus 332 ~~g~~~~~~~p~~~~~~~~~~~~~~~~alvGmaa~~a~~~ra~~t~-vlv~E~Tg~~~~llpl~ia~~ia~~v~~~~~~~ 410 (426)
T cd03683 332 LVGEIMAVLFPEGIRGGISNPIGPGGYAVVGAAAFSGAVTHTVSVA-VIIFELTGQISHLLPVLIAVLISNAVAQFLQPS 410 (426)
T ss_pred HHHHHHHHHcCcccccCCCCCcCchHHHHHHHHHHHHHHHhHHHHH-heeeeecCCcchHHHHHHHHHHHHHHHHhhCCC
Confidence 9999886532 36789999999999999999997766 699999999999999999999999999999889
Q ss_pred HHHHHHHhcCCCCCCC
Q 007394 387 IYEIILELKGLPFLDA 402 (605)
Q Consensus 387 iy~~~l~~~g~~~l~~ 402 (605)
+||.+++.||+|++++
T Consensus 411 iY~~~l~~~~~p~l~~ 426 (426)
T cd03683 411 IYDSIIKIKKLPYLPD 426 (426)
T ss_pred HHHHHHHhCCCCCCCC
Confidence 9999999999999863
|
This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia |
| >cd01036 ClC_euk Chloride channel, ClC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-54 Score=457.24 Aligned_cols=321 Identities=36% Similarity=0.641 Sum_probs=263.2
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+++.|++++++++++|+|+|||||++|+|+++|++++|.....++...+++++++++++||++++||+|||+|++|
T Consensus 83 l~~~~~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF 162 (416)
T cd01036 83 LSIRTLIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAF 162 (416)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhcc
Confidence 67899999999999999999999999999999999999999833221111113445556788999999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCC-ceeEEeeccCCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTG-GLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~-~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
|||++|++|++|++.++|+.+.+|++++++++++++.+.+.++........+... ....++++ ...++++.+++++++
T Consensus 163 ~APiaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~il 241 (416)
T cd01036 163 GAPIGGLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIYNSFNSGFELLDRSSAMFLSLTVFE-LHVPLNLYEFIPTVV 241 (416)
T ss_pred CCcceeeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHhccccCCccccccccccceeccccC-CCCCCCHHHHHHHHH
Confidence 9999999999999999999999999999999998888876433211000000000 00012222 235678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc-cchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQK-GKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFK 239 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~ 239 (605)
+|++||++|.+|+++++++.+++++.+.. .++++++.+++++++++++.+
T Consensus 242 lGv~~G~~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----------------------------- 292 (416)
T cd01036 242 IGVICGLLAALFVRLSIIFLRWRRRLLFRKTARYRVLEPVLFTLIYSTIHY----------------------------- 292 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHH-----------------------------
Confidence 99999999999999999999988765321 345677888888888765432
Q ss_pred cccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 240 ~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
...++++++.|+++|++|+++|+|||.|+|++++||++|+++|
T Consensus 293 -------------------------------------~~~l~~~~~~K~~~t~~t~~sg~pGG~f~Psl~iGA~~G~~~g 335 (416)
T cd01036 293 -------------------------------------APTLLLFLLIYFWMSALAFGIAVPGGTFIPSLVIGAAIGRLVG 335 (416)
T ss_pred -------------------------------------HHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHH
Confidence 1234567789999999999999999999999999999999999
Q ss_pred HHhhccc-----------CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHH
Q 007394 320 MAMGSYT-----------NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIY 388 (605)
Q Consensus 320 ~~~~~~~-----------~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy 388 (605)
.+++... ..+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+.+++.+++++|
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~alvGmaa~l~~~~r~Plt~~vi~~ElTg~~~~l~pl~ia~~ia~~v~~~~~~siY 415 (416)
T cd01036 336 LLVHRIAVAGIGAESATLWADPGVYALIGAAAFLGGTTRLTFSICVIMMELTGDLHHLLPLMVAILIAKAVADAFCESLY 415 (416)
T ss_pred HHHHHHccccccccccCCccChHHHHHHHHHHHhhhhhcchHhhhhheeeccCChhhHHHHHHHHHHHHHHHHhhCCCCC
Confidence 9886532 36899999999999999999999999999999999999999999999999999999988998
Q ss_pred H
Q 007394 389 E 389 (605)
Q Consensus 389 ~ 389 (605)
|
T Consensus 416 ~ 416 (416)
T cd01036 416 H 416 (416)
T ss_pred C
Confidence 6
|
These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. |
| >PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-53 Score=442.29 Aligned_cols=312 Identities=32% Similarity=0.613 Sum_probs=251.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|++++++++| +++.. +++++|.+++||+|||+|++|
T Consensus 36 ~~~~~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~-----------~~~~~-~~~~~r~l~~~g~aAglaa~F 103 (355)
T PF00654_consen 36 LPFRTLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGR-----------RFRLS-RNETRRLLLAAGAAAGLAAAF 103 (355)
T ss_dssp -HHHHHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHH-----------HTT---CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHH-----------hhccc-chHHHhHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999998 44441 233378899999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEe-eccCCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFD-VSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~-~~~~~~~~~~~~l~~~il 160 (605)
|||++|++|++|++.++++.+.++++++++++++++.+.+ +++.+ .|+ ++. ...+++.+++++++
T Consensus 104 ~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~~~~~--~f~~~~~-~~~~~~~~~~~~~l 169 (355)
T PF00654_consen 104 NAPLAGVLFALEELSRDFSVRLLLPALVASIVATLVSRLL-----------FGNHP--IFGSVPQ-LFPFSLWELPLFLL 169 (355)
T ss_dssp T-HHHHHHHHHCCTCHCCSTTTHHHHHHHHHHHHHHHHHH-----------HTSS---SS---TT------GGGHHHHHH
T ss_pred cCCcccceehhheeeccccchhhHHHHHHHHHHHHHHHHH-----------cCcCc--ccccccc-cccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999998865 34444 244 442 34789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhcccc--ccccCCCCCCCCCCCCCCCCCCCc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPF--LADCKACDPSFPETCPTNGRSGNF 238 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~--~~~~~~~~~~~~~~~~~~g~~g~~ 238 (605)
+|++||++|.+|+++++++++++++++ +.+.++++.+.+++++++++.++.|+ . .|.
T Consensus 170 lGi~~Gl~g~~f~~~~~~~~~~~~~~~-~~~~~~~l~~~i~gl~~g~l~~~~p~~~~----------------~g~---- 228 (355)
T PF00654_consen 170 LGIICGLLGALFNRLLRWLRKFFRKLK-RLKIPPILRPVIGGLVIGLLAFFFPEGSV----------------LGS---- 228 (355)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHSSGG-SG----------------SSS----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHHHHHHhhhcc----------------cCC----
Confidence 999999999999999999999998875 23334556888899999999999887 4 221
Q ss_pred ccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHH
Q 007394 239 KQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLL 318 (605)
Q Consensus 239 ~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~ 318 (605)
+|+ .++++++++ ...+.+..++.+++.|+++|++|+++|++||.|+|++++|+++|+++
T Consensus 229 --------G~~------------~i~~ll~~~-~~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~ 287 (355)
T PF00654_consen 229 --------GYE------------LIQSLLSGS-PPWFSLGSLLLLFLLKFLATALTLGSGAPGGIFFPSLFIGAALGRLF 287 (355)
T ss_dssp --------STT------------HHHHHCTT-----S-HHHHHHHHHHHHHHHHHHHHTT-BSBSHHHHHHHHHHHHHHH
T ss_pred --------cHH------------HHHHHHcCC-cchhhHHHHHHHHHHHHHHHHHhcCccCCCCEEccHHHHHHHHHHHH
Confidence 232 344444321 12467788899999999999999999999999999999999999999
Q ss_pred HHHhhccc----CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Q 007394 319 GMAMGSYT----NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGD 381 (605)
Q Consensus 319 g~~~~~~~----~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~ 381 (605)
+.+++... ..+|..|+++||+|++++++|+|++++++++|+||++++++|+++++++||.+++
T Consensus 288 ~~~~~~~~~~~~~~~~~~~al~G~~a~~~a~~~~Plt~~vl~~Eltg~~~~~~p~lia~~~a~~v~~ 354 (355)
T PF00654_consen 288 GALLGSFFPGISSVDPGVYALVGMAAFLAAVTRAPLTAIVLVLELTGDFQLLLPLLIAVAVAYLVAR 354 (355)
T ss_dssp HHHHHHH-GGG-T-SHHHHHHHHTTHHHHHHCS-HHHHHHHHHHHH--GGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhCCCcCCCchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhC
Confidence 99997641 2379999999999999999999999999999999999999999999999999986
|
; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A .... |
| >cd01033 ClC_like Putative ClC chloride channel | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-51 Score=434.38 Aligned_cols=305 Identities=22% Similarity=0.333 Sum_probs=256.4
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|.+++++++++|+|+|||||++|+|++++++++| +++. ++++||.+++||+|||+|++|
T Consensus 80 ~~~~~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa~i~~~~~~-----------~~~~--~~~~~r~li~~GaaAGlaa~F 146 (388)
T cd01033 80 MPFWETIIHAVLQIVTVGLGAPLGREVAPREVGALLAQRFSD-----------WLGL--TVADRRLLVACAAGAGLAAVY 146 (388)
T ss_pred CCHHHHHHHHHHHHhhhhcCCCcCcccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 568899999999999999999999999999999999999998 5554 678899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|+++++++.+.+++.++++++++.+.+. ++++++ .|.++. .++++.++++++++
T Consensus 147 ~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~-----------~~g~~~--~f~~~~--~~~~~~~l~~~ill 211 (388)
T cd01033 147 NVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASL-----------LKGDHP--IYDIPP--MQLSTPLLIWALLA 211 (388)
T ss_pred CCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-----------hCCCCc--eeecCC--CCCCHHHHHHHHHH
Confidence 999999999999999999999999999998888887775 346666 455552 34568899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|+++++++++++++.+ +.+..+.+++++++++.+++|+. .|.
T Consensus 212 Gi~~Gl~~~lf~~~~~~~~~~~~~~~-----~~~~~~~l~gl~~g~~~~~~p~~----------------~G~------- 263 (388)
T cd01033 212 GPVLGVVAAGFRRLSQAARAKRPKGK-----RILWQMPLAFLVIGLLSIFFPQI----------------LGN------- 263 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc-----chHHHHHHHHHHHHHHHHHHHHH----------------hCC-------
Confidence 99999999999999999988774321 12233456677888888888876 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+. ++.+++ ++.+...++.+++.|+++|++|+|+|++||.|+|++++||++|+++|++
T Consensus 264 -----G~~~------------i~~~~~----~~~~~~~ll~~~~~K~~~t~lt~gsG~~GG~f~P~l~iGa~~G~~~g~~ 322 (388)
T cd01033 264 -----GRAL------------AQLAFS----TTLTLSLLLILLVLKIVATLLALRAGAYGGLLTPSLALGALLGALLGIV 322 (388)
T ss_pred -----cHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHHH
Confidence 2322 223332 2244556677889999999999999999999999999999999999999
Q ss_pred hhcc-cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHHhhc
Q 007394 322 MGSY-TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NLLLLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 322 ~~~~-~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg-~~~~l~p~~~a~~~a~~v~~~l 383 (605)
++.. +..++..|+++||+|++++++|+|+|++++++|+|| +++.++|+|+++++|+.+++.+
T Consensus 323 ~~~~~p~~~~~~~a~~GmaA~laa~~~aPlt~ivl~~Eltg~~~~~l~Pl~ia~~~a~~vs~~~ 386 (388)
T cd01033 323 WNALLPPLSIAAFALIGAAAFLAATQKAPLTALILVLEFTRQNPLFLIPLMLAVAGAVAVSRFI 386 (388)
T ss_pred HHHhCCcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 8653 356788999999999999999999999999999999 8999999999999999999865
|
Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. |
| >cd01031 EriC ClC chloride channel EriC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-51 Score=437.42 Aligned_cols=318 Identities=30% Similarity=0.510 Sum_probs=270.7
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+.+|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++. ++.++|.+++||+|||++++|
T Consensus 81 ~~~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ig~~~~~-----------~~~~--~~~~~~~l~~~g~aag~aa~f 147 (402)
T cd01031 81 NWWRVLPVKFVGGVLALGSGLSLGREGPSVQIGAAIGQGVSK-----------WFKT--SPEERRQLIAAGAAAGLAAAF 147 (402)
T ss_pred ccHHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------HhcC--CHHHHHHHHHHHHHHhHHHHh
Confidence 467899999999999999999999999999999999999998 4444 577899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.++++.+.+++.++++++++++.+. .+++++ .|.++ ..+.+++.++++++++
T Consensus 148 ~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~-----------~~~~~~--~~~~~-~~~~~~~~~l~~~ill 213 (402)
T cd01031 148 NAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRL-----------FFGLGP--VLSIP-PLPALPLKSYWLLLLL 213 (402)
T ss_pred CCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH-----------HcCCCc--eEecC-CCCCCCHHHHHHHHHH
Confidence 999999999999999988888899999998888887764 345555 45554 2456889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++.+.+.+++++++++. ++++.+.+++++++++.++.|+. .|.
T Consensus 214 Gv~~G~~g~~f~~~~~~~~~~~~~~~~~---~~~~~~~l~gl~~~~~~~~~p~~----------------~g~------- 267 (402)
T cd01031 214 GIIAGLLGYLFNRSLLKSQDLYRKLKKL---PRELRVLLPGLLIGPLGLLLPEA----------------LGG------- 267 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC---ChhHHHHHHHHHHHHHHHHHHHH----------------hCC-------
Confidence 9999999999999999999998875322 23444556777888888878876 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+| +.++.+++ +++++..++.+++.|+++|++|+++|++||.|+|++++||++|+++|++
T Consensus 268 -----G~------------~~i~~~~~----~~~~~~~l~~~~~~K~~~t~lt~~~G~~GG~f~Psl~iGa~~G~~~g~~ 326 (402)
T cd01031 268 -----GH------------GLILSLAG----GNFSISLLLLIFVLRFIFTMLSYGSGAPGGIFAPMLALGALLGLLFGTI 326 (402)
T ss_pred -----HH------------HHHHHHHc----CCchHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 12 22333332 3456677778889999999999999999999999999999999999998
Q ss_pred hhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHH
Q 007394 322 MGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILE 393 (605)
Q Consensus 322 ~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~ 393 (605)
++.. ...+|..|+++||+|++++++|+|++++++++|+||++++++|+++++++|+.+++.+ ++++||.+++
T Consensus 327 ~~~~~~~~~~~~~~~a~~G~aa~~a~~~~aPlta~vl~~Eltg~~~~l~p~~ia~~ia~~v~~~~~~~siY~~~l~ 402 (402)
T cd01031 327 LVQLGPIPISAPATFAIAGMAAFFAAVVRAPITAIILVTEMTGNFNLLLPLMVVCLVAYLVADLLGGKPIYEALLE 402 (402)
T ss_pred HHHhcCcccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHhCCCChhHHHhC
Confidence 8752 2468999999999999999999999999999999999999999999999999999998 8999998763
|
This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter. |
| >COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=434.13 Aligned_cols=325 Identities=29% Similarity=0.506 Sum_probs=270.9
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|..+.|++++++++++|+|+|||||++|+|+++|+.++| |++. ++++||.+++||+|||+|++|
T Consensus 108 ~~~~~~~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~-----------~l~~--~~~~~r~Ll~~GaAaGlaaaF 174 (443)
T COG0038 108 ISPRVLPVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGR-----------LLKL--SREDRRILLAAGAAAGLAAAF 174 (443)
T ss_pred ccHHHHHHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999998 5655 678999999999999999999
Q ss_pred ccchhHHHHHHHHhcch-hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATW-WRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
|||++|++|++|+++++ +..+.++++++++.++..+...+ ++.+. .+.++. ...++.++++.+++
T Consensus 175 ~aPlagvlF~~E~l~~~~~~~~~l~p~~vaa~va~~v~~~~-----------~~~~~--~~~~~~-~~~~~~~~~~~~~~ 240 (443)
T COG0038 175 NAPLAGALFAIEVLYGRFLEYRALVPVLVAAVVALLVAGLF-----------GGPHF--LLPIVT-TPHMSLWDLLLYLV 240 (443)
T ss_pred CCcHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHc-----------CCCCc--eeeccc-cCcCCHHHHHHHHH
Confidence 99999999999999987 88888888888887777776642 23222 344432 56688999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
+|+++|++|.+|.+++...++++++.+ ..+.+.+.+++++++.+.++.|+. .|.
T Consensus 241 lGii~G~~g~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~l~g~~~l~~P~~----------------lg~------ 294 (443)
T COG0038 241 LGIIAGLFGVLLSRLLALSRRFFRRLP----LPPLLRPALGGLLVGALGLLFPEV----------------LGN------ 294 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc----chHHHHHHHHHHHHHHHHHhchhh----------------hCC------
Confidence 999999999999999987766666543 235666777888888899988887 221
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGM 320 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~ 320 (605)
+|+..... + ..++.+..++.+++.|+++|++|+|+|+|||+|+|++++||++|.++|.
T Consensus 295 ------G~~~~~~~------------~----~~~~~~~~l~~l~~~K~l~t~~s~gSG~~GGif~Psl~iGa~lG~~~g~ 352 (443)
T COG0038 295 ------GYGLIQLA------------L----AGEGGLLVLLLLFLLKLLATLLSYGSGAPGGIFAPSLFIGAALGLAFGA 352 (443)
T ss_pred ------CccHHHHH------------H----ccCccHHHHHHHHHHHHHHHHHHHhcCCCcceehHHHHHHHHHHHHHHH
Confidence 12221111 1 1223333366778999999999999999999999999999999999999
Q ss_pred Hhhccc---CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHhcC
Q 007394 321 AMGSYT---NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELKG 396 (605)
Q Consensus 321 ~~~~~~---~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~~g 396 (605)
+++... ...+..|+++||+|++++++|+|+|++++++||||+++.++|++++++++|.+++.+ ++++|+..+++++
T Consensus 353 ~~~~~~~~~~~~~~~~al~Gm~a~la~~~~aPlta~vlv~EmTg~~~~~l~ll~a~~ia~~~~~~~~~~~~~~~~~~~~~ 432 (443)
T COG0038 353 LLGLLFPPSILEPGLFALLGMAAFLAATTRAPLTAIVLVLEMTGNYQLLLPLLIACLIAYLVSRLLGGRPIYTQLLARRG 432 (443)
T ss_pred HHHhhcCccccchHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcC
Confidence 887632 245679999999999999999999999999999999999999999999999999988 8899999999988
Q ss_pred CCCCC
Q 007394 397 LPFLD 401 (605)
Q Consensus 397 ~~~l~ 401 (605)
.+..+
T Consensus 433 ~~~~~ 437 (443)
T COG0038 433 APILR 437 (443)
T ss_pred chhhh
Confidence 76443
|
|
| >cd01034 EriC_like ClC chloride channel family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-51 Score=433.05 Aligned_cols=314 Identities=24% Similarity=0.394 Sum_probs=255.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++.. ++.+||++++||+|||+|++|
T Consensus 75 ~~~r~~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~-----------~~~~~-~~~~~r~li~~GaaAGlaa~F 142 (390)
T cd01034 75 LSLRTAVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGR-----------RLPKW-GGLSERGLILAGGAAGLAAAF 142 (390)
T ss_pred ccHHHHHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHH-----------HcccC-chHHHHHHHHHHHHHhHHHHh
Confidence 678999999999999999999999999999999999999998 44431 367899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.++++.+.+++.+.++.+++++.+. ++++.+ .|.++. ...+++.++++++++
T Consensus 143 ~aPlaG~lF~~E~~~~~~~~~~~~~~~~~~~~a~~~~~~-----------~~g~~~--~f~~~~-~~~~~~~~~~~~ill 208 (390)
T cd01034 143 NTPLAGIVFAIEELSRDFELRFSGLVLLAVIAAGLVSLA-----------VLGNYP--YFGVAA-VALPLGEAWLLVLVC 208 (390)
T ss_pred CCcchhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-----------HcCCCC--ccCCCC-CCcCCHHHHHHHHHH
Confidence 999999999999999998888888888777777776654 345544 344442 234678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhh-ccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQ-KGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
|++||++|.+|++.+.++++++++... +...++++.+.+++++++++.++.|... .|.
T Consensus 209 Gii~G~~g~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~---------------~G~------ 267 (390)
T cd01034 209 GVVGGLAGGLFARLLVALSSGLPGWVRRFRRRRPVLFAALCGLALALIGLVSGGLT---------------FGT------ 267 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHHHHhCCCcc---------------ccC------
Confidence 999999999999999999988876532 2233445666677777777776654210 111
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGM 320 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~ 320 (605)
+|+.+ +..++++. .. ...+++.|+++|.+|+|+|+|||+|+|++++||++|+++++
T Consensus 268 ------G~~~i------------~~~~~~~~--~~----~~~~~l~K~i~t~lt~gsG~~gG~f~P~l~iGa~~G~~~~~ 323 (390)
T cd01034 268 ------GYLQA------------RAALEGGG--GL----PLWFGLLKFLATLLSYWSGIPGGLFAPSLAVGAGLGSLLAA 323 (390)
T ss_pred ------cHHHH------------HHHHhCCC--cc----cHHHHHHHHHHHHHHHHcCCCcceechHHHHHHHHHHHHHH
Confidence 23333 22222211 11 12456799999999999999999999999999999999999
Q ss_pred HhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHH
Q 007394 321 AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYE 389 (605)
Q Consensus 321 ~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~ 389 (605)
+++ ..++..|+++||+|++++++|+|+|++++++|+||++++++|+++++++|+.+++.+ ++++||
T Consensus 324 ~~~---~~~~~~~a~~G~aA~laa~~~aPlt~~vl~~Elt~~~~~l~p~lia~~~A~~v~~~~~~~~iY~ 390 (390)
T cd01034 324 LLG---SVSQGALVLLGMAAFLAGVTQAPLTAFVIVMEMTGDQQMLLPLLAAALLASGVSRLVCPEPLYH 390 (390)
T ss_pred Hhc---CCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 885 258999999999999999999999999999999999999999999999999999998 788885
|
These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. |
| >PRK05277 chloride channel protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=434.39 Aligned_cols=322 Identities=27% Similarity=0.493 Sum_probs=267.1
Q ss_pred cchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhhcc
Q 007394 4 ATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAFRA 83 (605)
Q Consensus 4 ~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F~a 83 (605)
+|+.+.|++++++++++|+|+|||||++|+|+++|+++++ +++. +++.++|++++||+|||++++|||
T Consensus 90 ~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iGa~ig~~~~~-----------~~~~-~~~~~~~~li~~G~aaglaa~f~A 157 (438)
T PRK05277 90 WRVLPVKFFGGLGTLGSGMVLGREGPTVQMGGNIGRMVLD-----------IFRL-RSDEARHTLLAAGAAAGLAAAFNA 157 (438)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHHHH-----------Hccc-CCHHHHHHHHHHHHHHhHHHhcCC
Confidence 5788999999999999999999999999999999999998 4443 156789999999999999999999
Q ss_pred chhHHHHHHHHhcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 84 PVGGVLFSLEEVATW--WRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 84 Pl~g~lF~~E~~~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|++|++|++|++.++ ++.+.+++.++++++++.+.+.+ +++++ .|+++. ...+++.++++++++
T Consensus 158 Pl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~~-----------~g~~~--~~~~~~-~~~~~~~~l~~~i~l 223 (438)
T PRK05277 158 PLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRLF-----------NGEQA--VIEVGK-FSAPPLNTLWLFLLL 223 (438)
T ss_pred chHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHh-----------cCCCc--eEeccC-CCCCCHHHHHHHHHH
Confidence 999999999998764 46667788888888887777653 34444 355542 344678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++.++++++++++...+++.++.+.+++++++.+.++.|+. .|.
T Consensus 224 Gi~~G~~g~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~p~~----------------~g~------- 280 (438)
T PRK05277 224 GIIFGIFGVLFNKLLLRTQDLFDRLHGGNKKRWVLMGGAVGGLCGLLGLLAPAA----------------VGG------- 280 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHhhhh----------------cCC-------
Confidence 999999999999999999999887644333344455667778888888877765 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+. ++..++ +++++..++.+++.|+++|++|+|+|++||.|+|++++||++|+++|++
T Consensus 281 -----G~~~------------i~~~~~----~~~~~~~l~~~~~~K~i~t~ls~gsG~~GG~f~Psl~iGa~~G~~~g~~ 339 (438)
T PRK05277 281 -----GFNL------------IPIALA----GNFSIGMLLFIFVARFITTLLCFGSGAPGGIFAPMLALGTLLGLAFGMV 339 (438)
T ss_pred -----hHHH------------HHHHHc----CCchHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 2332 222322 2355666777889999999999999999999999999999999999998
Q ss_pred hhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHhc
Q 007394 322 MGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK 395 (605)
Q Consensus 322 ~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~~ 395 (605)
+... ...+|..|+++||+|++++++|+|++++++++|+||++++++|+++++++|+.+++.+ ++++|+.++++.
T Consensus 340 ~~~~~p~~~~~~~~~a~~G~aA~la~~~~aPlt~~v~~~Eltg~~~~l~p~lia~~~A~~v~~~~~~~~iy~~~l~~~ 417 (438)
T PRK05277 340 AAALFPQYHIEPGTFAIAGMGALFAATVRAPLTGIVLVLEMTDNYQLILPLIITCLGATLLAQFLGGKPIYSALLERT 417 (438)
T ss_pred HHHHcCcccccHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 7652 2467899999999999999999999999999999999999999999999999999999 789999999874
|
|
| >cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-46 Score=400.15 Aligned_cols=301 Identities=28% Similarity=0.521 Sum_probs=254.8
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++. ++.++|.+++||++||++++|
T Consensus 80 ~~~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~g~~~~~-----------~~~~--~~~~~~~l~~~G~aaglaa~f 146 (383)
T cd00400 80 LPLRVALVKFLASALTLGSGGSVGREGPIVQIGAAIGSWLGR-----------RLRL--SRNDRRILVACGAAAGIAAAF 146 (383)
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHhc
Confidence 468999999999999999999999999999999999999998 4443 567899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLI 161 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ill 161 (605)
|||++|++|++|++.+++..+.++++++++++++.+.+.+ +++.+ .|+++ ...++++.++++++++
T Consensus 147 ~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~-----------~~~~~--~~~~~-~~~~~~~~~~~~~il~ 212 (383)
T cd00400 147 NAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL-----------FGAEP--AFGVP-LYDPLSLLELPLYLLL 212 (383)
T ss_pred CChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--eeeCC-CCCcCCHHHHHHHHHH
Confidence 9999999999999998888888889998888888887753 33433 45554 2467899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQF 241 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~~ 241 (605)
|++||++|.+|++++.++++++++++ +++.+.+.+++++++++.++.|+. .|.
T Consensus 213 Gv~~g~~g~~f~~~~~~~~~~~~~~~----~~~~~~~~i~gll~~~~~~~~p~~----------------~g~------- 265 (383)
T cd00400 213 GLLAGLVGVLFVRLLYKIERLFRRLP----IPPWLRPALGGLLLGLLGLFLPQV----------------LGS------- 265 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHHHHHH----------------HcC-------
Confidence 99999999999999999999887642 234556667788888888888886 221
Q ss_pred cCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHH
Q 007394 242 NCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMA 321 (605)
Q Consensus 242 ~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~ 321 (605)
+|+.. +..+ .++++...++.+++.|+++|++|+++|+|||.|+|++++||++|++++++
T Consensus 266 -----G~~~~------------~~~~----~~~~~~~~l~~~~~~K~~~t~l~~~sG~~GG~~~P~l~iGa~~G~~~~~~ 324 (383)
T cd00400 266 -----GYGAI------------LLAL----AGELSLLLLLLLLLLKLLATALTLGSGFPGGVFAPSLFIGAALGAAFGLL 324 (383)
T ss_pred -----cHHHH------------HHHH----cCChhHHHHHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHH
Confidence 13222 2222 12455666777889999999999999999999999999999999999999
Q ss_pred hhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 007394 322 MGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK 377 (605)
Q Consensus 322 ~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~ 377 (605)
++.. ...++..|+++||+|++++++|+|++++++++|+||+++.++|+++++++||
T Consensus 325 ~~~~~~~~~~~~~~~~~~G~aa~la~~~~aPlt~~vl~~Eltg~~~~l~p~~ia~~ia~ 383 (383)
T cd00400 325 LPALFPGLVASPGAYALVGMAALLAAVLRAPLTAILLVLELTGDYSLLLPLMLAVVIAY 383 (383)
T ss_pred HHHhCCcccCChHHHHHHHHHHHHHHHhCchHHHHHHHHHHhCChhhHHHHHHHHHhcC
Confidence 8752 3468999999999999999999999999999999999999999999998875
|
The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore |
| >cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-46 Score=391.05 Aligned_cols=305 Identities=22% Similarity=0.337 Sum_probs=242.7
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|..+.|++++.+++++|+|+|||||++|+|++++++++| ++|. +++++|.+++||+|||++++|
T Consensus 73 ~~~~~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~~~~-----------~~~~--~~~~~r~l~~~g~aAglaa~f 139 (378)
T cd03682 73 IPLRMAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADAFGR-----------VFKL--PEEDRRILLIAGIAAGFAAVF 139 (378)
T ss_pred CchHHHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHHHHH-----------HhCC--CHHHHHHHHHHHHHHHHHHHh
Confidence 578999999999999999999999999999999999999998 4443 566889999999999999999
Q ss_pred ccchhHHHHHHHHhc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 82 RAPVGGVLFSLEEVA-TWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
|||++|++|++|+++ ++++.+.+++.++++.+++.+.+.+ +..+. .|.++ ..+++++.+++++++
T Consensus 140 ~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~------------~~~~~-~~~~~-~~~~~~~~~l~~~i~ 205 (378)
T cd03682 140 GTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL------------GLEHT-HYHIV-FIPTLDPLLFVKVIL 205 (378)
T ss_pred CCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh------------CCCCC-ccccC-CCCCCCHHHHHHHHH
Confidence 999999999999996 6677777778888777777666542 11111 24433 235678899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
+|++||++|.+|+++++++++++++... .+++.+.+++++++++.++.+.-. . .|
T Consensus 206 ~Gi~~gl~g~~f~~~~~~~~~~~~~~~~----~~~~~~~iggl~~g~~~~~~~~~~------------~--~G------- 260 (378)
T cd03682 206 AGIIFGLAGRLFAELLHFLKKLLKKRIK----NPYLRPFVGGLLIILLVYLLGSRR------------Y--LG------- 260 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccC----CcHHHHHHHHHHHHHHHHHhcCCc------------c--cc-------
Confidence 9999999999999999999998876432 234455666777777666543210 0 11
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGM 320 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~ 320 (605)
.+|+.+... +++ ++.+ ....+.|+++|++|+|+|+|||.|+|++++||++|+++++
T Consensus 261 -----~g~~~i~~~-----------~~~----~~~~----~~~~l~K~~~t~~s~g~G~~GG~f~P~l~iGa~~G~~~~~ 316 (378)
T cd03682 261 -----LGTPLIEDS-----------FFG----GTVY----PYDWLLKLIFTVITLGAGFKGGEVTPLFFIGATLGNALAP 316 (378)
T ss_pred -----CCHHHHHHH-----------Hhc----CCch----HHHHHHHHHHHHHHHhcCCCCceechHHHHHHHHHHHHHH
Confidence 123222210 111 1122 2235799999999999999999999999999999999999
Q ss_pred HhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHHH
Q 007394 321 AMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYE 389 (605)
Q Consensus 321 ~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy~ 389 (605)
++ ..++..|+++||+|++++++|+|+|++++++|+|| ++.++|+++++++||.+++ ++++|+
T Consensus 317 ~~----~~~~~~~~~~Gmaa~laa~~raPlt~ivl~~Eltg-~~~~~p~~ia~~ia~~~~~--~~~iy~ 378 (378)
T cd03682 317 IL----GLPVSLLAALGFVAVFAGATNTPLACIIMGIELFG-AENAPYFFIACLVAYLFSG--HTGIYG 378 (378)
T ss_pred HH----CCCHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhC-ccchHHHHHHHHHHHHHhC--CCCCCC
Confidence 98 46788999999999999999999999999999999 5788899999999999987 777874
|
This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. |
| >PRK03655 putative ion channel protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-43 Score=372.27 Aligned_cols=295 Identities=15% Similarity=0.199 Sum_probs=224.8
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
++.+....|++++++++++|+|+|||||++|+|++++++++| +++ ++.++|+++.||+|||+||+|
T Consensus 95 ~~~~~~~~~~~~~~l~l~~G~S~GrEGP~VqiGa~igs~~~r-----------~~~---~~~~~~~l~~~gaAaGiaAaF 160 (414)
T PRK03655 95 VPPSALPGLLLALILGLAGGVSLGPEHPIMTVNIALAVAIGA-----------RLL---PRVNRMDWTILASAGTIGALF 160 (414)
T ss_pred CCccHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHH-----------Hhc---cCCChhHHHHHHHHHHHHHHh
Confidence 356788899999999999999999999999999999999998 332 234567789999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhh---HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSAL---LWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPV 158 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~ 158 (605)
|||++|++|++|++.+++..+. ...++.++++++.+.+. .++ +...++++ ....++..+++++
T Consensus 161 naPLaG~lFa~E~l~~~~~~~~~~~~~~~v~aa~~a~~v~~~-----------~~~--~~~~~~~~-~~~~~~~~~~~~~ 226 (414)
T PRK03655 161 GTPVAAALIFSQTLNGSNEVPLWDRLFAPLMAAAAGALTTGL-----------FFH--PHFSLPIA-HYGQMEMTDILSG 226 (414)
T ss_pred CchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-----------hCC--CCcceecC-CCCCCCHHHHHHH
Confidence 9999999999999988776422 12222333333333322 111 22233443 2345677899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhcc-ccccccCCCCCCCCCCCCCCCCCCC
Q 007394 159 TLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCL-PFLADCKACDPSFPETCPTNGRSGN 237 (605)
Q Consensus 159 illgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~~~~~~~~~~~~~~~~~g~~g~ 237 (605)
+++|++||++|.+|++...+.++++++++. +.....++|++++.++++. |+. .|
T Consensus 227 l~lgi~~gl~G~lf~~~~~~~~~~~~~~~~-----p~~~~~lgGl~vg~l~l~~~~~~----------------~g---- 281 (414)
T PRK03655 227 AIVAAIAIAAGMVAVWCLPRLHALMHRLKN-----PVLVLGIGGFILGILGVIGGPLT----------------LF---- 281 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----chHHHHHHHHHHHHHHHHhCCcc----------------cc----
Confidence 999999999999999999998888776432 2233456677777777653 332 12
Q ss_pred cccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH
Q 007394 238 FKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 317 (605)
Q Consensus 238 ~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~ 317 (605)
.+|+.+.... .. .++++..++++.+.|+++|++|+++|+|||.|+|++++||++|..
T Consensus 282 --------~Gy~~i~~~~------------~~---~~~~~~~ll~l~l~K~lat~ls~~sG~~GGiF~PsL~iGA~~G~~ 338 (414)
T PRK03655 282 --------KGLDEMQQMA------------AN---QAFSASDYFLLAVVKLAALVVAAASGFRGGRIFPAVFVGVALGLM 338 (414)
T ss_pred --------CCHHHHHHHH------------hc---CCccHHHHHHHHHHHHHHHHHHHccCCCCceehHHHHHHHHHHHH
Confidence 1354443322 11 245666777788999999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcHHHHHHHHHhhhhhhcc----hhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH
Q 007394 318 LGMAMGSYTNIDQGLYAVLGAASLMAGSMR----MTVSLCVIFLELTNNLLLLPITMIVLLIAKTVG 380 (605)
Q Consensus 318 ~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~----~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~ 380 (605)
++++++ ..++...+++||+|++++++| +|+|++++++||| +.|+|++++++.++.
T Consensus 339 ~~~l~p---~~~~~~~v~~~m~a~la~vtr~p~~sp~ta~viv~em~-----~~~l~~~~~~~~~~~ 397 (414)
T PRK03655 339 LHAHVP---AVPAAITVSCAILGIVLVVTRDGWLSLFMAAVVVPDTT-----LLPLLCIVMLPAWLL 397 (414)
T ss_pred HHHhcc---CCChHHHHHHHHHHHHHHHhccchhhHHHHHHHHhcch-----HHHHHHHHHHHHHHH
Confidence 999884 467888999999999999999 5999999999999 777888777766654
|
|
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-17 Score=155.34 Aligned_cols=135 Identities=21% Similarity=0.253 Sum_probs=114.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+.++++.|||++ +++++++++++.++.+.|.+++++.+||+|++ .+++|+|+++|+.+.....-
T Consensus 242 ~~~LtcadIMSr--dVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~-----------~rl~GiVt~~dl~~~a~~~p--- 305 (382)
T COG3448 242 MGELTCADIMSR--DVVTVSTDTSIDHARKLLQEHRIKALPVLDEH-----------RRLVGIVTQRDLLKHARPSP--- 305 (382)
T ss_pred hccccHHHhcCc--cceecCCcCChHHHHHHHHHcCcccccccccc-----------cceeeeeeHHHHhhccCcch---
Confidence 457799999999 99999999999999999999999999999998 89999999999965321100
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
.+.++ ++ ...+++.+|+++..|+.+|++..|....|.+.+.+++||+|+
T Consensus 306 ------~qrlr-------~~-----------------~~~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~- 354 (382)
T COG3448 306 ------FQRLR-------FL-----------------RPPTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA- 354 (382)
T ss_pred ------HHHhh-------cc-----------------CCCcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-
Confidence 00000 11 124689999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
+|+++||||++|++.++.++..
T Consensus 355 ----~g~lvGIvsQtDliaal~r~~~ 376 (382)
T COG3448 355 ----AGKLVGIVSQTDLIAALYRNWS 376 (382)
T ss_pred ----CCcEEEEeeHHHHHHHHHHHHH
Confidence 8999999999999998876543
|
|
| >PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-16 Score=178.99 Aligned_cols=185 Identities=13% Similarity=0.093 Sum_probs=133.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCC
Q 007394 154 DIIPVTLIGIIGGILGGLYNHILHKVLRLYNL--------INQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSF 225 (605)
Q Consensus 154 ~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~ 225 (605)
.+...+++|+++|+++.+|.+++++.++++-. ....+++++++.++++|++++.+.++.....
T Consensus 24 ~~~~~~~vG~~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ggli~~~~~~~~~~~~--------- 94 (574)
T PRK01862 24 MLIWSAIVGIGGAFATTAFREGIELIQHLISGHSGSFVEMAKSLPWYVRVWLPAAGGFLAGCVLLLANRGA--------- 94 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHHHhhcccHHHHHHHHHHHHHHHHHHHHHhcccc---------
Confidence 45667999999999999999999999888531 1222234456667777777776554332210
Q ss_pred CCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchh
Q 007394 226 PETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFL 305 (605)
Q Consensus 226 ~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~ 305 (605)
.+. | .- +.++....+ .+..++. ..+.|++.+++|+|+|.|.|.+.
T Consensus 95 ------~~~-g----------~~------------~~~~~~~~~--~~~~~~~----~~~~k~~~~~l~i~~G~s~G~Eg 139 (574)
T PRK01862 95 ------RKG-G----------KT------------DYMEAVALG--DGVVPVR----QSLWRSASSLLTIGSGGSIGREG 139 (574)
T ss_pred ------ccC-C----------cH------------HHHHHHHcC--CCCCChH----HHHHHHHHHHHHHHcCCCcCCcc
Confidence 000 0 01 112222111 1223332 23459999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHHHHhh
Q 007394 306 PIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKTVGDS 382 (605)
Q Consensus 306 Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~v~~~ 382 (605)
|++++||++|..++++++.. ......+.+||+||.+|+++++|++++++.+|.. +++. .+.|.++++++++.+++.
T Consensus 140 P~v~~ga~~~~~~~~~~~~~-~~~~r~l~~~G~aAglaa~F~aPl~g~lFa~E~~~~~~~~~~~~~~~~as~~a~~v~~~ 218 (574)
T PRK01862 140 PMVQLAALAASLVGRFAHFD-PPRLRLLVACGAAAGITSAYNAPIAGAFFVAEIVLGSIAMESFGPLVVASVVANIVMRE 218 (574)
T ss_pred hHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998421 2344678999999999999999999999999975 6664 588899999999999987
Q ss_pred c
Q 007394 383 F 383 (605)
Q Consensus 383 l 383 (605)
+
T Consensus 219 ~ 219 (574)
T PRK01862 219 F 219 (574)
T ss_pred H
Confidence 6
|
|
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2e-16 Score=150.04 Aligned_cols=123 Identities=20% Similarity=0.281 Sum_probs=111.4
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
.-+.+|+++|++ +++++.+++|++|+.+.|.++++++.||+|+ ++++|+++..|+..++.+..
T Consensus 169 iPk~~V~~~~s~--~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------------dk~vGiit~~dI~~aia~g~--- 231 (294)
T COG2524 169 IPKEKVKNLMSK--KLITVRPDDTLREAAKLFYEKGIRGAPVVDD------------DKIVGIITLSDIAKAIANGN--- 231 (294)
T ss_pred cCcchhhhhccC--CceEecCCccHHHHHHHHHHcCccCCceecC------------CceEEEEEHHHHHHHHHcCC---
Confidence 345689999999 9999999999999999999999999999998 59999999999988766532
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...+++++|.++++++.+|+.+.||+++|..+++.++.|+|.
T Consensus 232 -------------------------------------~~~kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds- 273 (294)
T COG2524 232 -------------------------------------LDAKVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS- 273 (294)
T ss_pred -------------------------------------ccccHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-
Confidence 124688999999999999999999999999999999999997
Q ss_pred ccCCCCceEEEEeHHHhHHHHh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+|+.+|+|||+|+++...
T Consensus 274 ----~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 274 ----NGKPVGIITRTDILTRIA 291 (294)
T ss_pred ----CCcEEEEEehHHHHHHhh
Confidence 799999999999998764
|
|
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-15 Score=157.78 Aligned_cols=147 Identities=14% Similarity=0.102 Sum_probs=125.4
Q ss_pred CCcHHHHHHHhcCCCC---CCCCCCcccc---ccccccccccCCC--eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCC
Q 007394 384 NPSIYEIILELKGLPF---LDAHPEPWMR---TLTVGELIDAKPP--VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVV 455 (605)
Q Consensus 384 ~~~iy~~~l~~~g~~~---l~~~~~~~l~---~~~v~diM~~~~~--v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~ 455 (605)
...+|...+..+|... ...++...+. ..+|+++|.+ + ++++++++++.++.+.|.+++...+||+|++
T Consensus 164 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~~im~~--~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~-- 239 (321)
T PRK11543 164 GDALAMAVMQARGFNEEDFARSHPAGALGARLLNKVHHLMRR--DDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQ-- 239 (321)
T ss_pred HHHHHHHHHHHcCCCHHHhccCCCCCHHHHHHHhHHHHHhcc--CCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCC--
Confidence 4478888888888766 6667777888 8999999999 6 9999999999999999988888899999987
Q ss_pred CCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc
Q 007394 456 PPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT 535 (605)
Q Consensus 456 ~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~ 535 (605)
++++|+|+.+|+.+.+..... ...+++++|++
T Consensus 240 ---------g~~iG~vt~~dl~~~~~~~~~---------------------------------------~~~~v~~im~~ 271 (321)
T PRK11543 240 ---------QQVQGVFTDGDLRRWLVGGGA---------------------------------------LTTPVNEAMTR 271 (321)
T ss_pred ---------CcEEEEecHHHHHHHHhCCCC---------------------------------------cCCcHHHhcCC
Confidence 899999999999764432100 01236788889
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
++.++.+++++.++++.|.+++.+.+||||+ +++++|+||++|++++
T Consensus 272 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 272 GGTTLQAQSRAIDAKEILMKRKITAAPVVDE-----NGKLTGAINLQDFYQA 318 (321)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHhc
Confidence 9999999999999999999999999999998 7899999999999874
|
|
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=156.40 Aligned_cols=150 Identities=13% Similarity=0.168 Sum_probs=123.2
Q ss_pred CCcHHHHHHHhcCCCC---CCCCCCccc---cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCC
Q 007394 384 NPSIYEIILELKGLPF---LDAHPEPWM---RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 457 (605)
Q Consensus 384 ~~~iy~~~l~~~g~~~---l~~~~~~~l---~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~ 457 (605)
..++|...+..+|... ...++...+ ..++|+|+|.+..+++++++++++.++.+.|.+++++.+||+|++
T Consensus 169 ~dsL~~~~l~~~g~~~~~~~~~~~~~~l~~~~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~---- 244 (326)
T PRK10892 169 GDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDN---- 244 (326)
T ss_pred HHHHHHHHHHHhCCCHHHHHhcCCCchhcccccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCC----
Confidence 5578888888888766 666666666 889999999853368899999999999999988887777888877
Q ss_pred CCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCC
Q 007394 458 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 537 (605)
Q Consensus 458 ~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 537 (605)
++++|+|+.+|+.+.+.+... ....+++++|++++
T Consensus 245 -------g~lvGivt~~Dl~~~~~~~~~--------------------------------------~~~~~v~~im~~~~ 279 (326)
T PRK10892 245 -------MKIEGIFTDGDLRRVFDMGID--------------------------------------LRQASIADVMTPGG 279 (326)
T ss_pred -------CcEEEEEecHHHHHHHhcCCC--------------------------------------cccCCHHHhcCCCC
Confidence 899999999999764322100 00135778899999
Q ss_pred ceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 538 ~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
.++.+++++.++++.|.+++.+++||+|+ ++++|+||++|++++.
T Consensus 280 ~~v~~~~~l~~a~~~m~~~~~~~lpVv~~------~~lvGiit~~dil~~~ 324 (326)
T PRK10892 280 IRVRPGILAVDALNLMQSRHITSVLVADG------DHLLGVLHMHDLLRAG 324 (326)
T ss_pred EEECCCCCHHHHHHHHHHCCCcEEEEeeC------CEEEEEEEhHHhHhcc
Confidence 99999999999999999999999999986 7999999999999753
|
|
| >cd00400 Voltage_gated_ClC CLC voltage-gated chloride channel | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=155.23 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-------hccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCC
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLIN-------QKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGR 234 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~ 234 (605)
|+++|+++.+|.+++.+.++++.+.. ..+++++.+.+++++++++.+..+.|.. .|.
T Consensus 1 Gi~~Gl~~~lf~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~l~~~~~~~~----------------~g~ 64 (383)
T cd00400 1 GVLSGLGAVLFRLLIELLQNLLFGGLPGELAAGSLSPLYILLVPVIGGLLVGLLVRLLGPA----------------RGH 64 (383)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHHHhCcc----------------cCC
Confidence 68999999999999999999876542 1223445566777777777666544321 111
Q ss_pred CCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHH
Q 007394 235 SGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAY 314 (605)
Q Consensus 235 ~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~ 314 (605)
+++++..... .+ ....+ ....+.|++.+.+|+++|.++|.+.|++++|+++
T Consensus 65 ------------G~~~v~~~~~------------~~-~~~~~----~~~~~~k~l~~~l~~~~G~s~G~egP~v~iGa~~ 115 (383)
T cd00400 65 ------------GIPEVIEAIA------------LG-GGRLP----LRVALVKFLASALTLGSGGSVGREGPIVQIGAAI 115 (383)
T ss_pred ------------ChHHHHHHHH------------hC-CCCCC----HHHHHHHHHHHHHHHHcCCCCCcchHHHHHHHHH
Confidence 2333322111 10 11112 2245689999999999999999999999999999
Q ss_pred HHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCc---chHHHHHHHHHHHHHHhhc
Q 007394 315 GRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLL---LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 315 G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~---~l~p~~~a~~~a~~v~~~l 383 (605)
|..+++.++. ...+...++++||+|.+++++++|++++++++|++++.. .+.|+++++++++.+++.+
T Consensus 116 g~~~~~~~~~-~~~~~~~l~~~G~aaglaa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~~~~~a~~v~~~~ 186 (383)
T cd00400 116 GSWLGRRLRL-SRNDRRILVACGAAAGIAAAFNAPLAGALFAIEVLLGEYSVASLIPVLLASVAAALVSRLL 186 (383)
T ss_pred HHHHHHHhCC-CHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998853 234567899999999999999999999999999997655 6889999999999999877
|
The ClC chloride channels catalyse the selective flow of Cl- ions across cell membranes, thereby regulating electrical excitation in skeletal muscle and the flow of salt and water across epithelial barriers. This domain is found in the halogen ions (Cl-, Br- and I-) transport proteins of the ClC family. The ClC channels are found in all three kingdoms of life and perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, transepithelial transport in animals, and the extreme acid resistance response in eubacteria. They lack any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. Unlike cation-selective ion channels, which form oligomers containing a single pore along the axis of symmetry, the ClC channels form two-pore |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3e-15 Score=147.71 Aligned_cols=206 Identities=20% Similarity=0.247 Sum_probs=154.2
Q ss_pred hHHHHHHHHHHHHHHHHhhccc----C--CCcHHHHH-HHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHH
Q 007394 305 LPIILMGSAYGRLLGMAMGSYT----N--IDQGLYAV-LGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAK 377 (605)
Q Consensus 305 ~Psl~iGa~~G~~~g~~~~~~~----~--~~~~~~a~-~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~ 377 (605)
.-=++|||+-=-.+...+.... + .+....|+ -|+|-..+|-+..-= =+.++.. +.-+|++-++.=.+
T Consensus 95 ~sKFvIGAMt~~~i~rY~~~g~LlIVGnR~~iq~lAL~~~~AVLvTGGF~~s~----evi~lAn--e~~lPvlstsYDTF 168 (432)
T COG4109 95 LSKFVIGAMTLDAILRYLDPGGLLIVGNREDIQLLALENGNAVLVTGGFDVSD----EVIKLAN--EKGLPVLSTSYDTF 168 (432)
T ss_pred hhhhhhhhhhHHHHHhhcCCCceEEEecHHHHHHHHHhcCCeEEEeCCCCccH----HHHHhhc--ccCCceEEecccce
Confidence 3345677766666655543210 0 11222333 344444455443221 1122222 23467777777788
Q ss_pred HHHhhcCCcHHHHHHHhcCCCCCCCCCCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCC
Q 007394 378 TVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 457 (605)
Q Consensus 378 ~v~~~l~~~iy~~~l~~~g~~~l~~~~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~ 457 (605)
.++.++++.+|+.+++.. -++|+|+|.|.++..++++++++++..+.-.+++|+.|||+|+.
T Consensus 169 TVAtmIN~Al~n~lIKkd--------------I~~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~---- 230 (432)
T COG4109 169 TVATMINKALSNQLIKKD--------------IITVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRS---- 230 (432)
T ss_pred eHHHHHHHHHHHhhhhhh--------------eeeHHHhccccccceeccccccHHHHHHHHHHcCCCccceeccc----
Confidence 888888999999988752 36899999977688999999999999999999999999999998
Q ss_pred CCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCC
Q 007394 458 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 537 (605)
Q Consensus 458 ~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 537 (605)
.+++|+|+.+|+... + ...++..+|+++|
T Consensus 231 -------~kvvGvVt~rDv~~~--------~------------------------------------~~t~ieKVMtknp 259 (432)
T COG4109 231 -------MKVVGVVTMRDVLDK--------K------------------------------------PSTTIEKVMTKNP 259 (432)
T ss_pred -------ceEEEEEEehhhhcC--------C------------------------------------CCccHHHHhccCC
Confidence 899999999999431 0 1134678899999
Q ss_pred ceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 538 ~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.++.+.+++..+.+.|.=.+++.+||+|+ +.+++|+|||+|+++.++.
T Consensus 260 ~tv~~~tsVAsvaq~MiwE~iem~PVv~~-----n~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 260 ITVRAKTSVASVAQMMIWEGIEMLPVVDS-----NNTLLGIITRQDVLKSLQM 307 (432)
T ss_pred eeecccchHHHHHHHHHhccceeeeEEcC-----CceEEEEEEHHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999999998875
|
|
| >cd01031 EriC ClC chloride channel EriC | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.5e-14 Score=153.16 Aligned_cols=177 Identities=15% Similarity=0.189 Sum_probs=127.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cchh---hHHHHHHHHHHHhhhhh-ccccccccCCCCCCCCCCCCCCC
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQK---GKMH---KLLLALSVSVFTSVCQY-CLPFLADCKACDPSFPETCPTNG 233 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~~-~~p~~~~~~~~~~~~~~~~~~~g 233 (605)
+|+++|+++.+|.++++++++++...... .+++ .++.+.+++++.+.+.. +.|+. .|
T Consensus 1 iGi~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~p~~----------------~g 64 (402)
T cd01031 1 IGLLAGLVAVLFRLGIDKLGNLRLSLYDFAANNPPLLLVLPLISAVLGLLAGWLVKKFAPEA----------------KG 64 (402)
T ss_pred CeehHhHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCcc----------------CC
Confidence 48899999999999999999987653321 1111 12333444555544332 24443 11
Q ss_pred CCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHH
Q 007394 234 RSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSA 313 (605)
Q Consensus 234 ~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~ 313 (605)
.+++++.. .++.+. .... .-..+.|++.+++|+|+|.|+|.+.|++++|++
T Consensus 65 ------------~G~~~v~~------------~l~~~~-~~~~----~~~~~~k~~~~~l~~gsG~s~G~EgP~v~iga~ 115 (402)
T cd01031 65 ------------SGIPQVEG------------VLAGLL-PPNW----WRVLPVKFVGGVLALGSGLSLGREGPSVQIGAA 115 (402)
T ss_pred ------------CCHHHHHH------------HHcCCC-Cccc----HHHHHHHHHHHHHHHhcCCCCCCCCcHHHHHHH
Confidence 12333322 222211 1111 224568999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHH-HhcCCc--chHHHHHHHHHHHHHHhhc
Q 007394 314 YGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE-LTNNLL--LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 314 ~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E-~tg~~~--~l~p~~~a~~~a~~v~~~l 383 (605)
+|..+++.++.. ..+...++.+||+|.+++++|+|++++++.+| ++++++ .+.|+++++++++.+++.+
T Consensus 116 ig~~~~~~~~~~-~~~~~~l~~~g~aag~aa~f~aPl~g~lf~~E~~~~~~~~~~~~~~~~a~~~a~~v~~~~ 187 (402)
T cd01031 116 IGQGVSKWFKTS-PEERRQLIAAGAAAGLAAAFNAPLAGVLFVLEELRHSFSPLALLTALVASIAADFVSRLF 187 (402)
T ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHHhHHHHhCCccHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988532 34567899999999999999999999999999 777766 6889999999999998865
|
This domain is found in the EriC chloride transporters that mediate the extreme acid resistance response in eubacteria and archaea. This response allows bacteria to survive in the acidic environments by decarboxylation-linked proton utilization. As shown for Escherichia coli EriC, these channels can counterbalance the electric current produced by the outwardly directed virtual proton pump linked to amino acid decarboxylation. The EriC proteins belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. In Escherichia coli EriC, a glutamate residue that protrudes into the pore is thought to participate in gating by binding to a Cl- ion site within the selectivity filter. |
| >PRK05277 chloride channel protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.3e-14 Score=151.12 Aligned_cols=183 Identities=15% Similarity=0.180 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccchhhHHHHHHHHHHHhhhhh-----ccccccccCCCCCCCCC
Q 007394 156 IPVTLIGIIGGILGGLYNHILHKVLRLYNLINQ---KGKMHKLLLALSVSVFTSVCQY-----CLPFLADCKACDPSFPE 227 (605)
Q Consensus 156 ~~~illgi~~gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~-----~~p~~~~~~~~~~~~~~ 227 (605)
.+.+++|+++|+++.+|.++++++++++..+.. ...+..+...++++.+.+.++. +.|+.
T Consensus 2 ~~~i~iGi~~Gl~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~p~~------------ 69 (438)
T PRK05277 2 FMAAVVGTLTGLVGVAFELAVDWVQNQRLGLLASVADNGLLLWIVAFLISAVLAMIGYFLVRRFAPEA------------ 69 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhcCccc------------
Confidence 467899999999999999999999998754321 1112222222222222222221 22322
Q ss_pred CCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHH
Q 007394 228 TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPI 307 (605)
Q Consensus 228 ~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Ps 307 (605)
.| .++.++... ++.. ..... .-....|++.+.+++|+|.++|.+.|+
T Consensus 70 ----~G------------sGi~~i~~~------------l~~~--~~~~~---~~~~~~k~~~~~l~~gsG~s~G~EgP~ 116 (438)
T PRK05277 70 ----GG------------SGIPEIEGA------------LEGL--RPVRW---WRVLPVKFFGGLGTLGSGMVLGREGPT 116 (438)
T ss_pred ----CC------------CCHHHHHHH------------HcCC--Cccch---HHHHHHHHHHHHHHHhcCCCCCCCCcH
Confidence 11 123333322 2211 11111 113468999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHH-HhcC--Cc--chHHHHHHHHHHHHHHhh
Q 007394 308 ILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLE-LTNN--LL--LLPITMIVLLIAKTVGDS 382 (605)
Q Consensus 308 l~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E-~tg~--~~--~l~p~~~a~~~a~~v~~~ 382 (605)
+++|+++|..+++.++.....+...+.++||+|.+++++++|++++++.+| ++++ ++ .+.|+++++++|+.+.+.
T Consensus 117 v~iGa~ig~~~~~~~~~~~~~~~~~li~~G~aaglaa~f~APl~g~lf~~E~~~~~~~~~~~~~~~~~~a~~~a~~v~~~ 196 (438)
T PRK05277 117 VQMGGNIGRMVLDIFRLRSDEARHTLLAAGAAAGLAAAFNAPLAGILFVIEEMRPQFRYSLISIKAVFIGVIMATIVFRL 196 (438)
T ss_pred HHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHhHHHhcCCchHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998542234567899999999999999999999999999 5663 34 378899999999999887
Q ss_pred c
Q 007394 383 F 383 (605)
Q Consensus 383 l 383 (605)
+
T Consensus 197 ~ 197 (438)
T PRK05277 197 F 197 (438)
T ss_pred h
Confidence 6
|
|
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-14 Score=125.46 Aligned_cols=123 Identities=23% Similarity=0.336 Sum_probs=105.0
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
..++++.+|.. +++.+++++++.+++++|++++++.+||+++ ++++|-|+.+++.+.+.+..
T Consensus 63 ~~ita~~iM~s--pvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------------~k~VGsItE~~iv~~~le~~---- 124 (187)
T COG3620 63 TRITAKTIMHS--PVVSVSPDDSISDVVNLMRDKGISQLPVIEE------------DKVVGSITENDIVRALLEGM---- 124 (187)
T ss_pred ceEeHhhhccC--CeeEECchhhHHHHHHHHHHcCCccCceeeC------------CeeeeeecHHHHHHHHhccc----
Confidence 46889999999 9999999999999999999999999999998 69999999999988765421
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
+++ ....++++|..+.+++.+++++..+.+++..++. +.|++
T Consensus 125 ---------------e~i------------------~~~~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--- 166 (187)
T COG3620 125 ---------------ESI------------------RSLRVREVMGEPFPTVSPDESLNVISQLLEEHPA--VLVVE--- 166 (187)
T ss_pred ---------------cch------------------hhhhHHHHhcCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe---
Confidence 000 1256889999999999999999999999887654 77775
Q ss_pred cCCCCceEEEEeHHHhHHHHhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++||||+.|+++....
T Consensus 167 ---~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 167 ---NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ---CCceEEEEeHHHHHHHHhc
Confidence 4999999999999987653
|
|
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.6e-14 Score=148.16 Aligned_cols=130 Identities=18% Similarity=0.246 Sum_probs=110.4
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++.+|+|+|+|+.++++++.+++++++.+.+.+++++.+||++++. ++++|+++.+|++..+.++
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~----------d~ivGiv~~kDll~~~~~~---- 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETI----------DNITGVLYIKDLLPHLNKK---- 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCC----------CceEEEEEHHHHHhHhccC----
Confidence 66889999999988999999999999999999999999999998742 6899999999997532110
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
..+++++| +++.++++++++.++++.|++.+.+..+|+|+
T Consensus 254 --------------------------------------~~~l~~~~-~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE- 293 (408)
T TIGR03520 254 --------------------------------------NFDWQSLL-REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE- 293 (408)
T ss_pred --------------------------------------CCCHHHHc-CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-
Confidence 01244555 46789999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
.|.++|+||.+|+++....+..++
T Consensus 294 ----~G~~~GiVT~eDileeivgei~de 317 (408)
T TIGR03520 294 ----YGGTSGLVTLEDIIEEIVGDISDE 317 (408)
T ss_pred ----CCCEEEEEEHHHHHHHHhCCCCCc
Confidence 799999999999999987655443
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.2e-13 Score=119.17 Aligned_cols=118 Identities=15% Similarity=0.177 Sum_probs=94.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+...+.++..... ..
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~-----------~~~~Giv~~~dl~~~~~~~~~~~~-----------~~ 59 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDEN-----------GKVVDVYSRFDVINLAKEGAYNNL-----------DL 59 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEeHHHHHHHHhcCccccc-----------cC
Confidence 67889999999999999999999999999987 899999999999875433211000 00
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
+..+ ....+++|..++.++++++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 60 ~~~~--------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-----~~~~~Givt~ 114 (120)
T cd04641 60 TVGE--------------------ALERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-----NKRVEGIISL 114 (120)
T ss_pred CHHH--------------------HHhhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-----CCCEEEEEEH
Confidence 0000 01234556677889999999999999999999999999998 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 115 ~di~~ 119 (120)
T cd04641 115 SDILQ 119 (120)
T ss_pred HHhhc
Confidence 99986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK01610 putative voltage-gated ClC-type chloride channel ClcB; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=8e-13 Score=141.57 Aligned_cols=185 Identities=14% Similarity=0.180 Sum_probs=136.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hhhccchhhHHHHHHHHHHHhhhhhcc-ccccccCCCC
Q 007394 153 MDIIPVTLIGIIGGILGGLYNHILHKVLRLYNL---------INQKGKMHKLLLALSVSVFTSVCQYCL-PFLADCKACD 222 (605)
Q Consensus 153 ~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~l~~~~~~~~-p~~~~~~~~~ 222 (605)
+.+...+++|+++|+.+.+|.++++++++++-. ....++|++++.+.++|++++.+.+++ |+. .
T Consensus 3 ~~~~~a~~iG~~~G~~~~~f~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~~ggll~g~~~~~~~~~~-~----- 76 (418)
T PRK01610 3 RRLLIATVVGILAALAVAGFRHAMLLLEWLFLSNDSGSLVNAATNLSPWRRLLTPALGGLAAGLLLWGWQKFT-Q----- 76 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchhhcccccchHHHHHHHHHHHHHHHHHHHHHcccc-c-----
Confidence 456677899999999999999999988775311 122345667777888888888766543 221 0
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcc
Q 007394 223 PSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 302 (605)
Q Consensus 223 ~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG 302 (605)
..+. | -+++ ++.. +. .+..+.. -.+.|++.+.+++|+|.|.|
T Consensus 77 --------~~~~-g-----------~~~v-----------i~av-~~--~g~~~~~----~~~~k~~~~~l~igsG~S~G 118 (418)
T PRK01610 77 --------QRPH-A-----------PTDY-----------MEAL-QT--DGQFDYA----ASLVKSLASLLVVTSGSAIG 118 (418)
T ss_pred --------ccCC-C-----------cHHH-----------HHHH-Hc--CCCCCcc----HHHHHHHHHHHHHHcCCccc
Confidence 0000 0 1111 1111 11 1222332 24579999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHHH
Q 007394 303 LFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKTV 379 (605)
Q Consensus 303 ~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~v 379 (605)
++.|+.++|+++|..++++++. ..+...+..||++|.+++++++|++++++.+|.. +++. .+.|+++++++++.+
T Consensus 119 rEGP~v~iGa~~g~~~~~~~~~--~~~~r~li~~GaaAGlaa~F~aPlaG~lFa~E~l~~~~~~~~~~p~~ias~~a~~v 196 (418)
T PRK01610 119 REGAMILLAALAASCFAQRFTP--RQEWKLWIACGAAAGMASAYHAPLAGSLFIAEILFGTLMLASLGPVVISAVVALLT 196 (418)
T ss_pred cccHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999962 4566789999999999999999999999999974 6554 588999999999999
Q ss_pred Hhhc
Q 007394 380 GDSF 383 (605)
Q Consensus 380 ~~~l 383 (605)
++.+
T Consensus 197 ~~~~ 200 (418)
T PRK01610 197 TNLL 200 (418)
T ss_pred HHHH
Confidence 9876
|
|
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-13 Score=117.96 Aligned_cols=109 Identities=14% Similarity=0.181 Sum_probs=92.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+.... ..
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~-~~---------------- 53 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEE-----------NKVLGQVTLSDLLEIGPN-DY---------------- 53 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHhhccc-cc----------------
Confidence 46788999999999999998888899999987 899999999999652100 00
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|..++.++.+++++.+++++|.+++.+.+||+|+ +|+++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-----~~~~~Giit~ 105 (111)
T cd04603 54 -----------------------ETLKVCEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-----EGKLVGTIYE 105 (111)
T ss_pred -----------------------cccChhheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-----CCeEEEEEEh
Confidence 012366788888899999999999999999999999999998 7999999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04603 106 RELLR 110 (111)
T ss_pred HHhhc
Confidence 99975
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-13 Score=138.85 Aligned_cols=132 Identities=18% Similarity=0.318 Sum_probs=109.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+.+.+|+++|+++.++++++.++++.++.+.+.+++++.+||++++. ++++|+++.+|++..+....
T Consensus 64 l~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~----------d~iiGiv~~kDll~~~~~~~--- 130 (292)
T PRK15094 64 IADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK----------DHIEGILMAKDLLPFMRSDA--- 130 (292)
T ss_pred cCCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCC----------CcEEEEEEHHHHHhHhhccC---
Confidence 56679999999977799999999999999999999999999998641 68999999999975432100
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...+++++|. ++.++++++++.++++.|++.+.+.+||+|+
T Consensus 131 -------------------------------------~~~~l~~l~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe- 171 (292)
T PRK15094 131 -------------------------------------EAFSMDKVLR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDE- 171 (292)
T ss_pred -------------------------------------CcCCHHHHcC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-
Confidence 0012445564 4568999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
.|.++|+||++|+++.+..+...+
T Consensus 172 ----~G~viGiVTleDIle~ivGei~de 195 (292)
T PRK15094 172 ----FGGVSGLVTIEDILELIVGEIEDE 195 (292)
T ss_pred ----CCCEEEEeEHHHHHHHHhCCCccc
Confidence 788999999999999988765444
|
|
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.4e-13 Score=117.93 Aligned_cols=112 Identities=13% Similarity=0.141 Sum_probs=94.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
.+.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----------g~~~G~vt~~dl~~~~~~~~~~--------------- 55 (114)
T cd04619 2 RLAKIDVNATLQRAAKILGEPGIDLVVVCDPH-----------GKLAGVLTKTDVVRQMGRCGGP--------------- 55 (114)
T ss_pred ceEEECCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEehHHHHHHHhhcCCC---------------
Confidence 36788999999999999999999999999987 8999999999997644321000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 56 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~Gvi~~ 108 (114)
T cd04619 56 ----------------------GCTAPVENVMTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-----NARPLGVLNA 108 (114)
T ss_pred ----------------------cccCCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-----CCcEEEEEEh
Confidence 0112466778889999999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04619 109 RDALK 113 (114)
T ss_pred Hhhcc
Confidence 99875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-13 Score=148.42 Aligned_cols=144 Identities=20% Similarity=0.220 Sum_probs=117.3
Q ss_pred cHHHHHHHhcCCCCCCCC-----CCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCC
Q 007394 386 SIYEIILELKGLPFLDAH-----PEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGL 460 (605)
Q Consensus 386 ~iy~~~l~~~g~~~l~~~-----~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~ 460 (605)
.++....+..|+.+++.. ....++.++++++|.+ +++++++++++.++.+.|.+++++.+||+|++
T Consensus 59 ~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~--~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~------- 129 (479)
T PRK07807 59 RMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFD--TPVTLSPDDTVGDALALLPKRAHGAVVVVDEE------- 129 (479)
T ss_pred HHHHHHHHCCCceEeeCCCCHHHHHHHHhhccccccccc--CCeEECCCCCHHHHHHHHHhcCCceEEEECCC-------
Confidence 455555444444443321 2344678889999998 99999999999999999999999999999987
Q ss_pred CCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCcee
Q 007394 461 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV 540 (605)
Q Consensus 461 ~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v 540 (605)
++++|+|+.+|+... . ...+++++|++++.++
T Consensus 130 ----gklvGIVT~rDL~~~--~------------------------------------------~~~~V~diMt~~~itV 161 (479)
T PRK07807 130 ----GRPVGVVTEADCAGV--D------------------------------------------RFTQVRDVMSTDLVTL 161 (479)
T ss_pred ----CeEEEEEeHHHHhcC--c------------------------------------------cCCCHHHhccCCceEE
Confidence 899999999998321 0 0024778899999999
Q ss_pred cCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 541 IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 541 ~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
++++++.+++++|.+++.+++||+|+ +++++|+||++||++.....
T Consensus 162 ~~d~sL~eAl~lM~~~~i~~LPVVD~-----~g~lvGIIT~~DIl~~~~~~ 207 (479)
T PRK07807 162 PAGTDPREAFDLLEAARVKLAPVVDA-----DGRLVGVLTRTGALRATIYT 207 (479)
T ss_pred CCCCcHHHHHHHHHhcCCCEEEEEcC-----CCeEEEEEEHHHHHHHhhCC
Confidence 99999999999999999999999998 78999999999999976643
|
|
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.6e-13 Score=113.02 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=83.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
.++++++++++.++.+.|.+++++++||+|++ +++++|+++.+|+.+.+
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~----------~~~~~Givt~~Dl~~~~--------------------- 50 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSR----------KQQFVGMLTITDFILIL--------------------- 50 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCC----------CCEEEEEEEHHHHhhhe---------------------
Confidence 47889999999999999999999999999862 16899999999995410
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEe
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILT 580 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiIT 580 (605)
. +.++.+++++.+++++|.+++.+++||+|+ + |+++|+||
T Consensus 51 --------------------------------~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~~~giit 91 (98)
T cd04618 51 --------------------------------R--LVSIHPERSLFDAALLLLKNKIHRLPVIDP-----STGTGLYILT 91 (98)
T ss_pred --------------------------------e--eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-----CCCCceEEee
Confidence 0 568999999999999999999999999997 5 89999999
Q ss_pred HHHhHH
Q 007394 581 RQDLRA 586 (605)
Q Consensus 581 r~Dll~ 586 (605)
++|+++
T Consensus 92 ~~d~~~ 97 (98)
T cd04618 92 SRRILK 97 (98)
T ss_pred hhhhhc
Confidence 999975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=115.44 Aligned_cols=111 Identities=21% Similarity=0.175 Sum_probs=91.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+.......
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~Givt~~dl~~~~~~~~~---------------- 54 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDED-----------GDLVGVVSRKDLLKASIGGAD---------------- 54 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHcCCC----------------
Confidence 56789999999999999988888999999987 899999999999775432100
Q ss_pred chhHhhhhcCcccccccChhhhhhhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC---CceE
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV---SPVV 576 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~---g~lv 576 (605)
....++.++|.+ ++.++++++++.+++++|.+++++.+||+|+ + ++++
T Consensus 55 ----------------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-----~~~~~~l~ 107 (118)
T cd04617 55 ----------------------LQKVPVGVIMTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-----VDEGLEVI 107 (118)
T ss_pred ----------------------ccCCCHHHHhCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-----CCccceEE
Confidence 001235566764 6779999999999999999999999999997 4 6999
Q ss_pred EEEeHHHhHH
Q 007394 577 GILTRQDLRA 586 (605)
Q Consensus 577 GiITr~Dll~ 586 (605)
|+||++|+++
T Consensus 108 Gvit~~~l~~ 117 (118)
T cd04617 108 GRITKTNITK 117 (118)
T ss_pred EEEEhhheec
Confidence 9999999875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=114.27 Aligned_cols=114 Identities=24% Similarity=0.280 Sum_probs=93.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 54 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRD-----------GGVVGIITLPDLLRALEADEA---------------- 54 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCC-----------CCEEEEEEHHHHHHHHhcccc----------------
Confidence 56788999999999999998888999999987 899999999999765432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....+++++|.+++.++.+++++.++++.|.+++.+.+||+|+ .+.|+++|+||+
T Consensus 55 ----------------------~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~---~~~~~~~Gvit~ 109 (115)
T cd04593 55 ----------------------GEPSAVDEVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR---GNPGQVLGLLTR 109 (115)
T ss_pred ----------------------cccccHHHhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeC---CCCCeEEEEEEh
Confidence 0012356677888999999999999999999999999999987 112799999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 110 ~di~~~ 115 (115)
T cd04593 110 ENVLLA 115 (115)
T ss_pred HHhhcC
Confidence 999863
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=115.70 Aligned_cols=122 Identities=21% Similarity=0.244 Sum_probs=97.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+...+........ .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~~~---------~--- 59 (124)
T cd04600 3 DVVTVTPDTSLEEAWALLRRHRIKALPVVDGD-----------RRLVGIVTQRDLLRHARPDGRRPL---------R--- 59 (124)
T ss_pred CcEEeCCCCCHHHHHHHHHHcCCceeeEECCC-----------CCEEEEEEHHHHHhhhcccccchh---------h---
Confidence 67889999999999999999888999999987 899999999999765432110000 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
... +......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 60 ---~~~-------------~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvit~ 118 (124)
T cd04600 60 ---GRL-------------RGRDKPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-----DRRLVGIVTQ 118 (124)
T ss_pred ---hhh-------------hcccccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-----CCCEEEEEEh
Confidence 000 0001124577888899999999999999999999999999999997 7899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 119 ~di~~~ 124 (124)
T cd04600 119 TDLIAA 124 (124)
T ss_pred HHhhcC
Confidence 999863
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.6e-13 Score=144.60 Aligned_cols=150 Identities=15% Similarity=0.189 Sum_probs=114.8
Q ss_pred CCcHHHHHHHhcCCCCCCCC-C-Ccccc-ccccccccccC-CCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCC
Q 007394 384 NPSIYEIILELKGLPFLDAH-P-EPWMR-TLTVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSG 459 (605)
Q Consensus 384 ~~~iy~~~l~~~g~~~l~~~-~-~~~l~-~~~v~diM~~~-~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~ 459 (605)
+..+.-.+++.+|+.+.+.. . ++..+ -.+|+++|... .+..++++++++.++.+.|.++++..+||+|++
T Consensus 64 gdalAiala~~gG~g~Ih~n~sie~qa~lV~kVk~~~~g~i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~------ 137 (502)
T PRK07107 64 DDNMAIALAREGGLSFIFGSQSIESEAAMVRRVKNYKAGFVVSDSNLTPDNTLADVLDLKEKTGHSTVAVTEDG------ 137 (502)
T ss_pred hHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHHHHhcCCcCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEeCC------
Confidence 55777778888888865432 1 11111 23577887531 144689999999999999999999999999972
Q ss_pred CCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc--CC
Q 007394 460 LANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TP 537 (605)
Q Consensus 460 ~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~ 537 (605)
+++++++|+||.+|+.... . +...+++++|++ ++
T Consensus 138 --~~~gkLvGIVT~~DLr~~~---~---------------------------------------~~~~~V~dIMt~~~~~ 173 (502)
T PRK07107 138 --TAHGKLLGIVTSRDYRISR---M---------------------------------------SLDTKVKDFMTPFEKL 173 (502)
T ss_pred --CcCCEEEEEEEcHHhhccc---c---------------------------------------CCCCCHHHHhCCCCCe
Confidence 1238999999999995310 0 001347788886 67
Q ss_pred ceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 538 ~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
.++++++++.+|+++|.+++++.+||||+ +++++|+||++|+++..
T Consensus 174 itv~~d~~l~eAl~lM~e~~i~~LPVVD~-----~g~LvGIIT~~Dilk~~ 219 (502)
T PRK07107 174 VTANEGTTLKEANDIIWDHKLNTLPIVDK-----NGNLVYLVFRKDYDSHK 219 (502)
T ss_pred EEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEhHHHHhcc
Confidence 88999999999999999999999999998 78999999999999854
|
|
| >cd03682 ClC_sycA_like ClC sycA-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-12 Score=133.93 Aligned_cols=175 Identities=14% Similarity=0.110 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCC
Q 007394 158 VTLIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGN 237 (605)
Q Consensus 158 ~illgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~ 237 (605)
.+++|+++|+++.+|++++.+.++++.. .+|..+..+ +++++++.+...+|.. .+.
T Consensus 2 a~~iGii~G~~~~~f~~~i~~~~~~~~~----~~~~~~~~p-~~g~~i~~l~~~~~~~----------------~~~--- 57 (378)
T cd03682 2 ALLIGLLVGSASALFLWSLDWATEFREA----HPWLLPFLP-LAGLLIGYLYQKFGKN----------------SEK--- 57 (378)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhHHHHHHH-HHHHHHHHHHHHhCcc----------------cCC---
Confidence 5789999999999999999999988643 123223333 3344444333322221 010
Q ss_pred cccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH
Q 007394 238 FKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 317 (605)
Q Consensus 238 ~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~ 317 (605)
+.++. ++ ..+.+ ....++. ....|++.+.+++++|.|+|.+.|++++|+++|..
T Consensus 58 ---------g~~~v-----------~~-~~~~~-~~~~~~~----~~~~k~~~~~l~l~~G~s~G~Egp~v~~ga~~~~~ 111 (378)
T cd03682 58 ---------GNNLI-----------IE-EIHGP-EEGIPLR----MAPLVLFGTVLTHLFGGSAGREGTAVQMGGSLADA 111 (378)
T ss_pred ---------ChHHH-----------HH-HHHcc-CCCCchH----HHHHHHHHHHHHHHcCCccCCcchHHHHHHHHHHH
Confidence 11111 11 11111 1112222 23469999999999999999999999999999999
Q ss_pred HHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh--cCC--cchHHHHHHHHHHHHHHhhc
Q 007394 318 LGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT--NNL--LLLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 318 ~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t--g~~--~~l~p~~~a~~~a~~v~~~l 383 (605)
+++.++.. ..+...++.+||+|.+++++|+|++++++.+|++ +++ ..+.|.++++++++.+++.+
T Consensus 112 ~~~~~~~~-~~~~r~l~~~g~aAglaa~f~aPl~g~~f~~E~~~~~~~~~~~~~~~~i~~~~a~~v~~~~ 180 (378)
T cd03682 112 FGRVFKLP-EEDRRILLIAGIAAGFAAVFGTPLAGAIFALEVLVLGRLRYSALIPCLVAAIVADWVSHAL 180 (378)
T ss_pred HHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 99988431 2345678999999999999999999999999987 443 45888999999999988765
|
This ClC family presents in bacteria, where it facilitates acid resistance in acidic soil. Mutation of this gene (sycA) in Rhizobium tropici CIAT899 causes serious deficiencies in nodule development, nodulation competitiveness, and N2 fixation on Phaseolus vulgaris plants, due to its reduced ability for acid resistance. This family is part of the ClC chloride channel superfamiy. These proteins catalyse the selective flow of Cl- ions across cell membranes and Cl-/H+ exchange transport. These proteins share two characteristics that are apparently inherent to the entire ClC chloride channel superfamily: a unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.4e-12 Score=112.72 Aligned_cols=105 Identities=24% Similarity=0.326 Sum_probs=91.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.+++++++++++.+.|.+++++.+||+|++ ++++|+++.+|+.... .
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~------~-------------- 51 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEK-----------NKVVGIVTSKDVAGKD------P-------------- 51 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCC-----------CeEEEEecHHHHhccc------c--------------
Confidence 67889999999999999998888899999987 8999999999995310 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+++++|.+.+.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 52 ------------------------~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 102 (108)
T cd04596 52 ------------------------DTTIEKVMTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-----NKKLLGIISR 102 (108)
T ss_pred ------------------------cccHHHHhcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCCEEEEEEH
Confidence 01356677788889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 103 ~di~~ 107 (108)
T cd04596 103 QDVLK 107 (108)
T ss_pred HHhhc
Confidence 99975
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.1e-12 Score=110.69 Aligned_cols=107 Identities=21% Similarity=0.315 Sum_probs=92.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.+.+++++.+||+|++ ++++|+++.+|+++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~----------------- 54 (110)
T cd04605 3 PVVTISEDASIKEAAKLMIEENINHLPVVDED-----------GRLVGIVTSWDISKAVARDK----------------- 54 (110)
T ss_pred CCEEECCCCCHHHHHHHHHhCCCceEEEECCC-----------CcEEEEEeHHHHHHHHhhCc-----------------
Confidence 67789999999999999998888999999987 89999999999976432210
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.++.++|.+++.+++++++++++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 55 -------------------------~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~v~~ 104 (110)
T cd04605 55 -------------------------KSVEDIMTRNVITATPDEPIDVAARKMERHNISALPVVDA-----ENRVIGIITS 104 (110)
T ss_pred -------------------------cCHHHhcCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-----CCcEEEEEEH
Confidence 1245666778889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+.+
T Consensus 105 ~di~~ 109 (110)
T cd04605 105 EDISK 109 (110)
T ss_pred HHhhh
Confidence 99964
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.1e-12 Score=111.98 Aligned_cols=109 Identities=27% Similarity=0.312 Sum_probs=92.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.+++++++++++.+.+.+.+++.+||+|++ ++++|+++..|+.+.+....
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~----------------- 53 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGD-----------GHLVGLLTRDDLIRALAEGG----------------- 53 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCC-----------CcEEEEeeHHHHHHHHHhcC-----------------
Confidence 56788999999999999988888999999987 89999999999976543211
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.+++++++++++++.|.+++.+.+||+|+ +++++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~ 105 (111)
T cd04639 54 -----------------------PDAPVRGVMRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-----SGRLVGLVTL 105 (111)
T ss_pred -----------------------CCCcHHHHhcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-----CCCEEEEEEH
Confidence 001356677788899999999999999999999999999997 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+.+
T Consensus 106 ~dl~~ 110 (111)
T cd04639 106 ENVGE 110 (111)
T ss_pred HHhhc
Confidence 99975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.40 E-value=7.2e-13 Score=117.93 Aligned_cols=112 Identities=15% Similarity=0.207 Sum_probs=93.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|++++++.+||+|++ ++++|+++.+|+.+.+..+..
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Gii~~~dl~~~~~~~~~---------------- 55 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDES-----------GKILGMVTLGNLLSSLSSGKV---------------- 55 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CCEEEEEEHHHHHHHHHHhcc----------------
Confidence 67889999999999999999999999999987 899999999999765433110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHH---------HcCCcEEEEccccccCCC
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFR---------QVGLRHLLVVPKYEAAGV 572 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~---------~~~~~~lpVVd~~~~~~~ 572 (605)
+...+++++|++++.++.+++++.++.+++. +.+.+++||+|+ +
T Consensus 56 ----------------------~~~~~v~~im~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-----~ 108 (124)
T cd04608 56 ----------------------QPSDPVSKALYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-----Q 108 (124)
T ss_pred ----------------------CCCCcHHHHhhccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-----c
Confidence 0123588899999999999999999999653 336788899987 7
Q ss_pred CceEEEEeHHHhHHH
Q 007394 573 SPVVGILTRQDLRAF 587 (605)
Q Consensus 573 g~lvGiITr~Dll~~ 587 (605)
|+++|+||++|++++
T Consensus 109 ~~~~Givt~~Dl~~~ 123 (124)
T cd04608 109 EKPIGIVTKIDLLSY 123 (124)
T ss_pred cceEEEEehhHhhhh
Confidence 999999999999875
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.8e-12 Score=111.93 Aligned_cols=112 Identities=13% Similarity=0.246 Sum_probs=92.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++++.|.+.+.+.+||+|++. ++++|+++.+|+++.+.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~----------~~~~G~v~~~dl~~~~~~~~~~~-------------- 57 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRE----------SDAYGIVTMRDILKKVVAEGRDP-------------- 57 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCC----------CcEEEEEehHHHHHHHHhCCCCC--------------
Confidence 678899999999999999988889999998621 58999999999987553311000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 58 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~Gvi~~ 108 (114)
T cd04630 58 -----------------------DRVNVYEIMTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN------NELIGIISL 108 (114)
T ss_pred -----------------------CccCHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------CEEEEEEEH
Confidence 012466778788899999999999999999999999999986 889999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 109 ~dl~~ 113 (114)
T cd04630 109 TDIFL 113 (114)
T ss_pred HHhhc
Confidence 99975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-12 Score=141.09 Aligned_cols=150 Identities=15% Similarity=0.159 Sum_probs=117.5
Q ss_pred HhhcCCcHHHHHHHhcCCCCCCC-CCCccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCC
Q 007394 380 GDSFNPSIYEIILELKGLPFLDA-HPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPS 458 (605)
Q Consensus 380 ~~~l~~~iy~~~l~~~g~~~l~~-~~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~ 458 (605)
-++++..+++.|+..+++..... ...+.++.++++++|.+ ++.++++++++.++.+.|.+++++.+||+|++
T Consensus 303 ~~y~~~~~~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~----- 375 (454)
T TIGR01137 303 RNYMTKFLNDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLP--APVTVHPTETVGDAIEILREYGFDQLPVVTEA----- 375 (454)
T ss_pred ccccCcccChHHHHhcCCcccccccHHHHhccCCHHHhCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----
Confidence 45556666778888877643222 12355888999999998 89999999999999999998888999999987
Q ss_pred CCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCc
Q 007394 459 GLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPY 538 (605)
Q Consensus 459 ~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~ 538 (605)
++++|+|+.+|+.+.+...... ...++.++|++++.
T Consensus 376 ------~~~~Givt~~dl~~~~~~~~~~--------------------------------------~~~~v~~im~~~~~ 411 (454)
T TIGR01137 376 ------GKVLGSVTLRELLSALFAGKAN--------------------------------------PDDAVSKVMSKKFI 411 (454)
T ss_pred ------CeEEEEEEHHHHHHHHhccCCC--------------------------------------cCCCHHHhcCCCCe
Confidence 8999999999997754321100 01246778888888
Q ss_pred eecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 539 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 539 ~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
++++++++.+++++|.+++ .+||++ +++++|+||++|+++++
T Consensus 412 ~v~~~~~l~~a~~~~~~~~---~~vV~~-----~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 412 QIGEGEKLSDLSKFLEKNS---SAIVTE-----EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred EECCcCcHHHHHHHHHHCC---eeEEEE-----CCEEEEEEEHHHHHHhh
Confidence 9999999999999998754 355665 58999999999999864
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.1e-12 Score=108.37 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=84.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+++++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+...
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~---------------------- 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDD-----------GKLSGIITERDLIAK---------------------- 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEEHHHHhcC----------------------
Confidence 67889999999999999998888999999987 899999999999431
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+.++.+++++.+++++|.+++.+.+||+|+ +|+++|+||+
T Consensus 49 ---------------------------------~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-----~~~~~Giit~ 90 (96)
T cd04614 49 ---------------------------------SEVVTATKRTTVSECAQKMKRNRIEQIPIING-----NDKLIGLLRD 90 (96)
T ss_pred ---------------------------------CCcEEecCCCCHHHHHHHHHHhCCCeeeEECC-----CCcEEEEEEH
Confidence 11568999999999999999999999999998 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 91 ~di~~ 95 (96)
T cd04614 91 HDLLK 95 (96)
T ss_pred HHhhc
Confidence 99986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.8e-12 Score=110.86 Aligned_cols=110 Identities=22% Similarity=0.250 Sum_probs=92.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
...++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.+...
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 55 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDEN-----------GRLLGTVTDGDIRRALLKGLS---------------- 55 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCC-----------CCEEEEEEcHHHHHHHhcCCC----------------
Confidence 35678999999999999998888899999987 899999999999764432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 56 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 107 (113)
T cd04607 56 -----------------------LDDPVSEVMNRNPITAKVGSSREEILALMRERSIRHLPILDE-----EGRVVGLATL 107 (113)
T ss_pred -----------------------cCCCHHHhhcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-----CCCEEEEEEh
Confidence 012356777788889999999999999999999999999997 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|++.
T Consensus 108 ~di~~ 112 (113)
T cd04607 108 DDLLS 112 (113)
T ss_pred HHhcc
Confidence 99874
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.2e-12 Score=109.58 Aligned_cols=111 Identities=23% Similarity=0.297 Sum_probs=93.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~Giv~~~~l~~~~~~~~~~--------------- 55 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDG-----------GRLVGIFSERDIVRKVALRGAS--------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEehHHHHHHHhhcCCC---------------
Confidence 56788999999999999998899999999987 8999999999997754321100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 56 ----------------------~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~------~~~~Gvit~ 107 (113)
T cd04623 56 ----------------------ALDTPVSEIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG------GKLVGIVSI 107 (113)
T ss_pred ----------------------ccccCHHHhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC------CEEEEEEEH
Confidence 0012466778788899999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04623 108 GDVVK 112 (113)
T ss_pred HHhhc
Confidence 99975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-12 Score=108.64 Aligned_cols=104 Identities=14% Similarity=0.112 Sum_probs=89.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++..|+.+...
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~-----------g~~~Giv~~~dl~~~~~-------------------- 50 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDAD-----------GQPLGFVTRREAARASG-------------------- 50 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEeHHHHHHhcc--------------------
Confidence 56788999999999999998888899999877 89999999999964210
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.++.++|.+.+.++.+++++.++++.|.+.+...+||+|+ +++++|+||+
T Consensus 51 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 100 (106)
T cd04582 51 -------------------------GCCGDHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-----DGRYVGEVTQ 100 (106)
T ss_pred -------------------------cchhhhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-----CCcEEEEEEH
Confidence 0144566677788999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 101 ~~l~~ 105 (106)
T cd04582 101 RSIAD 105 (106)
T ss_pred HHhhc
Confidence 99975
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=108.44 Aligned_cols=106 Identities=21% Similarity=0.310 Sum_probs=91.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++..+++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~------------------- 52 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKD-----------NKLLGIVSLESLEQAYKE------------------- 52 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCC-----------CcEEEEEEHHHHHHHhhc-------------------
Confidence 56788999999999999998888999999987 899999999999653211
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..++.++|.+.+.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 53 ------------------------~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-----~g~~~Gvit~ 103 (109)
T cd04583 53 ------------------------AKSLEDIMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-----DGKLVGLITR 103 (109)
T ss_pred ------------------------CCcHhHhhcCCceEECCCCcHHHHHHHHHHcCCceeeEECC-----CCeEEEEEeh
Confidence 01355667788889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 104 ~~l~~ 108 (109)
T cd04583 104 SSLVD 108 (109)
T ss_pred HHhhc
Confidence 99875
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.4e-12 Score=111.14 Aligned_cols=112 Identities=20% Similarity=0.250 Sum_probs=92.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~-------------- 56 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDN-----------GNLVGFLSEQDCLKQLLESSYHC-------------- 56 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCC-----------CeEEEEeehHHHHHHhhhhhhcc--------------
Confidence 56789999999999999988888899999987 89999999999976543211000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 57 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvit~ 108 (114)
T cd04629 57 ----------------------DGVATVRDIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD------GKLVGQISR 108 (114)
T ss_pred ----------------------CCCccHHHHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC------CEEEEEEEH
Confidence 0012466778888889999999999999999999999999986 799999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04629 109 RDVLR 113 (114)
T ss_pred HHHhc
Confidence 99975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.2e-12 Score=109.18 Aligned_cols=110 Identities=23% Similarity=0.302 Sum_probs=93.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+++.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~l~~~~~~~~~---------------- 54 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPD-----------ERPIGIVTERDIVRAVAAGID---------------- 54 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEeeHHHHHHHHhccCC----------------
Confidence 56788999999999999998888999999987 899999999999765433110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+++++|.+++.++.+++++.++++.|.+++...+||+|+ +|+++|++|+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gilt~ 106 (112)
T cd04624 55 -----------------------LDTPVSEIMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-----GGELVGVISI 106 (112)
T ss_pred -----------------------CccCHHHhccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-----CCcEEEEEEH
Confidence 012356777788899999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04624 107 RDLVR 111 (112)
T ss_pred HHhcc
Confidence 99975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=7.9e-12 Score=110.73 Aligned_cols=120 Identities=16% Similarity=0.220 Sum_probs=92.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++. ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~----------~~~~Giv~~~dl~~~~~~~~~~~-------------- 57 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEES----------GEVIGILSQRRLVEFLWENARSF-------------- 57 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCC----------CcEEEEEEHHHHHHHHHHhHHhc--------------
Confidence 677899999999999999988889999998721 68999999999987654321000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
+..+.. ........++|.+++.++.+++++.++++.|.+++.+++||+|+ +++++|+||+
T Consensus 58 ~~~~~~---------------~~~~~~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-----~~~~vGiit~ 117 (123)
T cd04627 58 PGLDPL---------------YPIPLRDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-----QGNLIGNISV 117 (123)
T ss_pred cchhhh---------------hhhhhhhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-----CCcEEEEEeH
Confidence 000000 00012234567788899999999999999999999999999998 7899999999
Q ss_pred HHhH
Q 007394 582 QDLR 585 (605)
Q Consensus 582 ~Dll 585 (605)
+|+-
T Consensus 118 ~di~ 121 (123)
T cd04627 118 TDVR 121 (123)
T ss_pred HHhh
Confidence 9975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.2e-12 Score=110.78 Aligned_cols=109 Identities=23% Similarity=0.309 Sum_probs=89.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 007394 422 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 500 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~-~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 500 (605)
++.++++++++.++.+.|.+.+ .+.+||+|++ ++++|+++.+|+.+......
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~dl~~~~~~~~---------------- 54 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNE-----------GRYVGIISLADLRAIPTSQW---------------- 54 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCC-----------CcEEEEEEHHHHHHHHHhhc----------------
Confidence 6778999999999999987664 7889999987 89999999999976432100
Q ss_pred cchhHhhhhcCcccccccChhhhhhhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEE
Q 007394 501 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578 (605)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGi 578 (605)
...++.++|.+ .+.++.+++++.++++.|.+++.+++||+|+ +++++|+
T Consensus 55 ------------------------~~~~v~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-----~~~~~Gv 105 (114)
T cd04801 55 ------------------------AQTTVIQVMTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-----SGQVIGL 105 (114)
T ss_pred ------------------------cccchhhhhcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-----CCcEEEE
Confidence 00235566653 3568999999999999999999999999997 7899999
Q ss_pred EeHHHhHH
Q 007394 579 LTRQDLRA 586 (605)
Q Consensus 579 ITr~Dll~ 586 (605)
||.+|+++
T Consensus 106 l~~~di~~ 113 (114)
T cd04801 106 ITEADLLR 113 (114)
T ss_pred Eeccceec
Confidence 99999875
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.6e-12 Score=111.79 Aligned_cols=124 Identities=20% Similarity=0.261 Sum_probs=93.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++..|+.+...+.......
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~------------ 58 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEK-----------GKLIGNISASDLKGLLLSPDDLLLY------------ 58 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCC-----------CcEEEEEEHHHhhhhhcCcchhhcc------------
Confidence 57889999999999999998889999999987 8999999999998754321100000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....... +. .......+.|.+++.++++++++.+++++|.+++.+++||+|+ +++++|+||+
T Consensus 59 ~~~~~~~-------~~------~~~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-----~~~~~Giit~ 120 (126)
T cd04642 59 RTITFKE-------LS------EKFTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-----EGKPIGVITL 120 (126)
T ss_pred cchhhhh-------hh------hhcccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-----CCCEEEEEEH
Confidence 0000000 00 0001123456678889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 121 ~dil~ 125 (126)
T cd04642 121 TDIIS 125 (126)
T ss_pred HHHhc
Confidence 99975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.8e-12 Score=109.56 Aligned_cols=111 Identities=20% Similarity=0.201 Sum_probs=92.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++.+++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 54 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDK-----------KRLVGIITRYDVLSYALESEE---------------- 54 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCC-----------CCEEEEEEHHHHHHhhhhhhh----------------
Confidence 35678999999999999999888999999987 899999999999764322110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 55 ----------------------~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvvt~ 107 (113)
T cd04615 55 ----------------------LKDAKVREVMNSPVITIDANDSIAKARWLMSNNNISRLPVLDD-----KGKVGGIVTE 107 (113)
T ss_pred ----------------------hcCCcHHHhccCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEEH
Confidence 0012356777788899999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 108 ~dl~~ 112 (113)
T cd04615 108 DDILR 112 (113)
T ss_pred HHhhc
Confidence 99975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.4e-12 Score=111.38 Aligned_cols=120 Identities=24% Similarity=0.315 Sum_probs=96.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++.+++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~~~------------ 58 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNED-----------GKLVGLLTQRDLLRAALSSLSDNGE------------ 58 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCC-----------CCEEEEEEHHHHHHHhccccccccc------------
Confidence 56789999999999999999999999999987 8999999999997754321100000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
+.. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 59 ---~~~--------------~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 116 (122)
T cd04803 59 ---ESL--------------TKERDVPVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-----KGTLVGIITR 116 (122)
T ss_pred ---ccc--------------ccccCcCHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-----CCCEEEEEEH
Confidence 000 001124577888888999999999999999999999999999998 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
.|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04803 117 SDFLR 121 (122)
T ss_pred HHhhc
Confidence 99985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-12 Score=114.91 Aligned_cols=132 Identities=22% Similarity=0.304 Sum_probs=96.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++++|+.+....+......
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~-----------~~~~Gvi~~~dl~~~~~~~~~~~~~------------ 59 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDD-----------GRLVGIVSEGDLLRRAELGTERRRA------------ 59 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCC-----------CCEEEEeeHHHHHHHhcccCcchhh------------
Confidence 67889999999999999999999999999987 8999999999997654332100000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.+.+.... .++.. .........+++++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|+||+
T Consensus 60 ~~~~~~~~---~~~~~-~~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd~------g~~~Gvit~ 129 (135)
T cd04586 60 RWLDLLAG---AEELA-AAFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVRG------GRLVGIVSR 129 (135)
T ss_pred hHHHHhcc---hHHHH-HHHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEecC------CEEEEEEEh
Confidence 00000000 00000 000001124578888888999999999999999999999999999986 899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04586 130 ADLLR 134 (135)
T ss_pred Hhhhc
Confidence 99875
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.5e-12 Score=108.94 Aligned_cols=109 Identities=15% Similarity=0.226 Sum_probs=91.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~dl~~~~~~~~~---------------- 54 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNE-----------EKLKGVVTFTDILDLDLFESF---------------- 54 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCC-----------CCEEEEEehHHhHHHHhhccc----------------
Confidence 57789999999999999998899999999987 899999999999764321100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++.+++++.++++.|.+++.+.+||+|+ |+++|+||+
T Consensus 55 -----------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 105 (111)
T cd04626 55 -----------------------LEKKVFNIVSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD------NKLIGVVRT 105 (111)
T ss_pred -----------------------ccCcHHHHhcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEh
Confidence 012356677888889999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04626 106 KDILD 110 (111)
T ss_pred HHhcc
Confidence 99874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd03685 ClC_6_like ClC-6-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-12 Score=136.02 Aligned_cols=187 Identities=17% Similarity=0.180 Sum_probs=122.6
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhccchhh----HHHHHHHHHHHhhhhh-ccccccccCC
Q 007394 151 HVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLI-----NQKGKMHK----LLLALSVSVFTSVCQY-CLPFLADCKA 220 (605)
Q Consensus 151 ~~~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~~-----~~~~~~~~----~~~~~~~~~l~~~~~~-~~p~~~~~~~ 220 (605)
....+.+.+++|+++|+++.+|.+++.++++++... .....+.+ +..+++++++.+.+.. +.|+.
T Consensus 29 ~~~~w~l~ilvGi~~Gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~p~a----- 103 (466)
T cd03685 29 EFLKWIICLLIGIFTGLVAYFIDLAVENLAGLKFLVVKNYIEKGRLFTAFLVYLGLNLVLVLVAALLVAYIAPTA----- 103 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCccc-----
Confidence 345566779999999999999999999999885322 11111121 2344455565555443 33443
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCC-CCCcchhHHHHHHHHHHHHHHHHhcCCC
Q 007394 221 CDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNT-PTEFQPSSILIFFILYCILGLITFGIAV 299 (605)
Q Consensus 221 ~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~l~~~~~~k~~~t~~t~g~g~ 299 (605)
.|. | ..++ +...+... ...+++. .++.|++.+.+++|+|.
T Consensus 104 -----------~Gs-G-----------ip~v------------~~~l~g~~~~~~l~~r----~~~~K~i~~~l~vgsG~ 144 (466)
T cd03685 104 -----------AGS-G-----------IPEV------------KGYLNGVKIPHILRLK----TLLVKIVGVILSVSGGL 144 (466)
T ss_pred -----------CCC-C-----------HHHH------------HHHHcCcCccccchHH----HHHHHHHHHHHHHhcCC
Confidence 121 1 2222 22221111 1111222 34589999999999999
Q ss_pred CccchhHHHHHHHHHHHHHHHHhh-----------c-ccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-CC--c
Q 007394 300 PSGLFLPIILMGSAYGRLLGMAMG-----------S-YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-NL--L 364 (605)
Q Consensus 300 ~gG~f~Psl~iGa~~G~~~g~~~~-----------~-~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg-~~--~ 364 (605)
|.|.+.|++.+||++|..+++... . ....+...+..+|+||.+++++++|++++++.+|.++ .+ +
T Consensus 145 s~GrEGP~v~iGa~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~r~li~~GaAAGlaaaF~APl~G~lFa~E~l~~~~~~~ 224 (466)
T cd03685 145 ALGKEGPMIHIGACIAAGLSQGGSTSLRLDFRWFRYFRNDRDKRDFVTCGAAAGVAAAFGAPVGGVLFSLEEVASFWNQA 224 (466)
T ss_pred CCCCCCCcchHHHHHHHHHhhccccccccchhhhhhccCHHHHHHHHHHHhhcchhhccCCCcceeeeeeehhhhhcchh
Confidence 999999999999999999997431 0 1123456789999999999999999999999999875 33 2
Q ss_pred chHHHHHHHHHHHHHHh
Q 007394 365 LLPITMIVLLIAKTVGD 381 (605)
Q Consensus 365 ~l~p~~~a~~~a~~v~~ 381 (605)
...+.++++++|..+++
T Consensus 225 ~~~~~l~~s~ias~va~ 241 (466)
T cd03685 225 LTWRTFFSSMIVTFTLN 241 (466)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44555555566655554
|
This CD includes ClC-6, ClC-7 and ClC-B, C, D in plants. Proteins in this family are ubiquitous in eukarotes and their functions are unclear. They are expressed in intracellular organelles membranes. This family belongs to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. ClC chloride ion channel superfamily perform a variety of functions including cellular excitability regulation, cell volume regulation, membrane potential stabilization, acidification of intracellular organelles, signal transduction, and transepithelial transport in animals. |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.9e-12 Score=113.40 Aligned_cols=133 Identities=18% Similarity=0.193 Sum_probs=96.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++..|+++.+......... ..+.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~--------~~~~ 62 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDN-----------GKPVGVITYRDLAFAEFEDNERGLP--------KKSI 62 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCC-----------CCEEEEEeHHHHHHHhhcccccccc--------hhhh
Confidence 56788999999999999999888999999987 8999999999998765432110000 0000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.+ ....+...+... .....+++++|.+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||+
T Consensus 63 ~~---~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------~~~~Gvit~ 129 (135)
T cd04621 63 KM---KRKAGQKRYRYV----KEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN------DNIVGVITK 129 (135)
T ss_pred hh---hhhccccccccc----ccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------CEEEEEEEH
Confidence 00 000000000000 01123578889888899999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 130 ~di~~ 134 (135)
T cd04621 130 TDICR 134 (135)
T ss_pred HHHhh
Confidence 99986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.7e-12 Score=108.79 Aligned_cols=111 Identities=21% Similarity=0.197 Sum_probs=93.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+++.+.+.+... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~-----------~~~~G~v~~~~i~~~~~~~~~-~-------------- 56 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDED-----------GRLVGIFTDGDLRRALEKGLD-I-------------- 56 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCC-----------CCEEEEechHHHHHHHhccCc-c--------------
Confidence 56778999999999999988888899999987 899999999999875543110 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +++++|+||+
T Consensus 57 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~iG~it~ 108 (114)
T cd04604 57 -----------------------LTLPVADVMTRNPKTIDPDALAAEALELMEENKITALPVVDD-----NGRPVGVLHI 108 (114)
T ss_pred -----------------------ccCCHHHhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEEEH
Confidence 002366778888889999999999999999999999999997 6899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+||++
T Consensus 109 ~di~~ 113 (114)
T cd04604 109 HDLLR 113 (114)
T ss_pred HHhhc
Confidence 99975
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd01033 ClC_like Putative ClC chloride channel | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.1e-11 Score=129.78 Aligned_cols=174 Identities=17% Similarity=0.207 Sum_probs=127.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---------hhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCC
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLI---------NQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTN 232 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 232 (605)
|+++|+.+.+|.++++++++++-.. ...+++++++.+.+++++++++.++.+..
T Consensus 1 G~~~gl~a~~f~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ggl~~~l~~~~~~~~----------------- 63 (388)
T cd01033 1 GVGAGLGGGLLTLLLHGVQHLAFGYSEGSFLTGVAAVSPIRRALSLTVGGLIAGLGWYLLRRK----------------- 63 (388)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccchhhhccCChHHHHHHHHHHHHHHHHHHHHHhcc-----------------
Confidence 6789999999999999999986321 12234566777778888887665543211
Q ss_pred CCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHH
Q 007394 233 GRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGS 312 (605)
Q Consensus 233 g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa 312 (605)
|. | -.+ +++..+.+ ...++. -.+.|++.+.+|+|+|.+.|++.|+.++|+
T Consensus 64 g~-g-----------i~~------------v~~~~~~~--~~~~~~----~~~~k~~~~~l~ig~G~s~G~EGP~v~iGa 113 (388)
T cd01033 64 GK-K-----------LVS------------IKQAVRGK--KRMPFW----ETIIHAVLQIVTVGLGAPLGREVAPREVGA 113 (388)
T ss_pred CC-C-----------ccc------------HHHHhcCC--CCCCHH----HHHHHHHHHHhhhhcCCCcCcccHHHHHHH
Confidence 11 0 011 11111111 112222 234699999999999999999999999999
Q ss_pred HHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHHHHhhc
Q 007394 313 AYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 313 ~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~v~~~l 383 (605)
++|..+++.++.. ..+...+..||++|.+++++++|++++++.+|.. .+++ .+.|+++++++++.+++.+
T Consensus 114 ~i~~~~~~~~~~~-~~~~r~li~~GaaAGlaa~F~aPlaG~lFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 186 (388)
T cd01033 114 LLAQRFSDWLGLT-VADRRLLVACAAGAGLAAVYNVPLAGALFALEILLRTISLRSVVAALATSAIAAAVASLL 186 (388)
T ss_pred HHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999988532 3456689999999999999999999999999976 4444 5889999999999998876
|
Clc proteins are putative halogen ion (Cl-, Br- and I-) transporters found in eubacteria. They belong to the ClC superfamily of halogen ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.3e-12 Score=109.05 Aligned_cols=115 Identities=20% Similarity=0.241 Sum_probs=91.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+++++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+.+.+.+... .
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~-~-------------- 55 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKE-----------GKYVGTISLTDILWKLKGLEN-L-------------- 55 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCC-----------CcEEEEEeHHHHHHHhhccCc-h--------------
Confidence 67889999999999999998888999999987 899999999999775432110 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++ ...++.++|.+.+.++++++++.++++.|.+.+ .+||+|+ +++++|+||+
T Consensus 56 ~~~~~------------------~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-----~~~~~Gvit~ 110 (116)
T cd04643 56 DLERL------------------VDLKVIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-----DGIFIGIITR 110 (116)
T ss_pred hHHHH------------------hCCcHHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-----CCeEEEEEEH
Confidence 00000 012466778888999999999999999998754 5999998 7899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 111 ~dil~~ 116 (116)
T cd04643 111 REILKA 116 (116)
T ss_pred HHhhcC
Confidence 999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=99.33 E-value=4.3e-12 Score=137.55 Aligned_cols=126 Identities=18% Similarity=0.233 Sum_probs=105.9
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhc-----CCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRN-----TTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~-----~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+.+++++|++ ++++++++++++++.+.+++ ++...+||+|++ ++++|+++.+|++.. +
T Consensus 128 ~~e~tvg~iMt~--~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~-----------~~l~GvV~l~dLl~a--~ 192 (449)
T TIGR00400 128 YSDDSAGRIMTI--EYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNES-----------KHLKGVLSIRDLILA--K 192 (449)
T ss_pred CCcchHHHhCcC--ceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCC-----------CeEEEEEEHHHHhcC--C
Confidence 345689999998 99999999999999999975 334578888887 899999999998531 0
Q ss_pred chhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEE
Q 007394 483 KWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLL 562 (605)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lp 562 (605)
. ..+++++|++++.+++++++++++.+.|++++...+|
T Consensus 193 ----~--------------------------------------~~~v~~im~~~~~~v~~~~~~~eal~~m~~~~~~~lp 230 (449)
T TIGR00400 193 ----P--------------------------------------EEILSSIMRSSVFSIVGVNDQEEVARLIQKYDFLAVP 230 (449)
T ss_pred ----C--------------------------------------CCcHHHHhCCCCeeECCCCCHHHHHHHHHHcCCCEEe
Confidence 0 0236778888889999999999999999999999999
Q ss_pred EccccccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 563 VVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 563 VVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
|||+ +|+++|+||.+|+++.+.++..++
T Consensus 231 VVD~-----~g~lvGiIt~~Dil~~l~~~~~ed 258 (449)
T TIGR00400 231 VVDN-----EGRLVGIVTVDDIIDVIQSEATED 258 (449)
T ss_pred EEcC-----CCeEEEEEEHHHHHHHHHhhhHHH
Confidence 9998 799999999999999887755433
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1e-11 Score=108.50 Aligned_cols=110 Identities=20% Similarity=0.285 Sum_probs=88.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 007394 422 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 500 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~-~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 500 (605)
++.++++++++.++.+.|.+++ ...+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~-------------- 55 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVEK------------GRLLGIFTERDIVRLTAIGKDL-------------- 55 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcCC------------CcEEEEEeHHHHHHHHhcCCCc--------------
Confidence 5677899999999999998777 566777764 7999999999997654321100
Q ss_pred cchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCC--CCHHHHHHHHHHcCCcEEEEccccccCCCCceEEE
Q 007394 501 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIES--MSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578 (605)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~--~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGi 578 (605)
...++.++|.+++.++.++ +++.++++.|.+++.+.+||+|+ +|+++|+
T Consensus 56 ------------------------~~~~i~~~~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Gv 106 (115)
T cd04620 56 ------------------------SDLPIGEVMTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-----QGQLIGL 106 (115)
T ss_pred ------------------------cccCHHHhcCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-----CCCEEEE
Confidence 0123566777778888887 78999999999999999999998 7999999
Q ss_pred EeHHHhHH
Q 007394 579 LTRQDLRA 586 (605)
Q Consensus 579 ITr~Dll~ 586 (605)
||++|+++
T Consensus 107 it~~dl~~ 114 (115)
T cd04620 107 VTAESIRQ 114 (115)
T ss_pred EEhHHhhc
Confidence 99999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=7.3e-12 Score=110.51 Aligned_cols=120 Identities=23% Similarity=0.351 Sum_probs=94.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|++ ++++|++++.|+++.......... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~~~~~-----~-~----- 59 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKA-----------GELIGIITRRDIIRAGSVRTSVED-----Q-Q----- 59 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEcHHHHhhccccccccc-----h-h-----
Confidence 67789999999999999998888999999987 899999999999753211000000 0 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|++|+
T Consensus 60 ~~------------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-----~g~~~Gvit~ 116 (122)
T cd04635 60 RT------------------QTKASPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-----KDQLVGIVDR 116 (122)
T ss_pred hh------------------hhhccCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-----CCcEEEEEEh
Confidence 00 000123466778888899999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 117 ~dl~~ 121 (122)
T cd04635 117 HDVLK 121 (122)
T ss_pred HHhhc
Confidence 99986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.5e-11 Score=131.34 Aligned_cols=134 Identities=13% Similarity=0.199 Sum_probs=110.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++.+|+|+|+|+.++++++.+++++++.+.+.+++|+.+||.+++. +.++|++..+|++..+.++.
T Consensus 184 l~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~----------D~IiGiv~~kDll~~~~~~~--- 250 (413)
T PRK11573 184 LEKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSL----------DDAISMLRVREAYRLMTEKK--- 250 (413)
T ss_pred cCCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCC----------CceEEEEEHHHHHHHhhccC---
Confidence 66789999999999999999999999999999999999999997642 78999999999976432210
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
..... ++.+++ +++.+|++++++.++++.|++++.+...|+|+
T Consensus 251 ------------~~~~~-----------------------~l~~~~-r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE- 293 (413)
T PRK11573 251 ------------EFTKE-----------------------NMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE- 293 (413)
T ss_pred ------------cCCHH-----------------------HHHhhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-
Confidence 00000 122332 57889999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
.|...|+||.+|+++....+...+
T Consensus 294 ----yG~~~GiVTleDilEeivGei~de 317 (413)
T PRK11573 294 ----YGDIQGLVTVEDILEEIVGDFTTS 317 (413)
T ss_pred ----CCCeEEEeeHHHHHHHHhCCCCcc
Confidence 899999999999999988766544
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=99.33 E-value=5.4e-12 Score=136.11 Aligned_cols=121 Identities=21% Similarity=0.208 Sum_probs=104.9
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
++.+++.++|.+ +++++++++++.++.+.|.+++++.+||+|+ ++++|+|+.+|+... .
T Consensus 85 v~~VKv~eim~~--~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD~------------gklvGIVT~rDL~~~----~--- 143 (475)
T TIGR01303 85 VAFVKSRDLVLD--TPITLAPHDTVSDAMALIHKRAHGAAVVILE------------DRPVGLVTDSDLLGV----D--- 143 (475)
T ss_pred Hhhcchhhcccc--CCeEECCCCCHHHHHHHHHhcCCeEEEEEEC------------CEEEEEEEHHHhhcC----C---
Confidence 567788899998 8899999999999999999988888888875 689999999998321 0
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...+++++|++++.++++++++.+++++|.+++.+++||+|+
T Consensus 144 -------------------------------------~~~~V~dIMt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~- 185 (475)
T TIGR01303 144 -------------------------------------RFTQVRDIMSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA- 185 (475)
T ss_pred -------------------------------------CCCCHHHHccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-
Confidence 012477889999999999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++||++.....
T Consensus 186 ----~g~LvGIIT~~DLl~~~~~~ 205 (475)
T TIGR01303 186 ----DGTLAGILTRTGALRATIYT 205 (475)
T ss_pred ----CCeEEEEEEHHHHHHHHhCC
Confidence 78999999999999976654
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-11 Score=110.09 Aligned_cols=126 Identities=24% Similarity=0.267 Sum_probs=94.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++.+|+...+.......... ..
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~~~~~~~~~~~~~---------~~ 61 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDN-----------GKLTGIVTRHDIVDFVVRDRDKARTG---------DR 61 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCC-----------CcEEEEEEHHHHHHHHhhhhhhcchh---------hh
Confidence 56788999999999999999999999999987 89999999999987543211000000 00
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.. + .......+++++|++++.++++++++.++++.|.+.+.+.+||+++ .++++++|+||+
T Consensus 62 ~~-~---------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~---~~~~~~~Gvit~ 122 (128)
T cd04632 62 SG-E---------------KERMLDLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTP---DDDTKVVGILTK 122 (128)
T ss_pred hh-h---------------hhhhccCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEecc---CCCCcEEEEEEh
Confidence 00 0 0000113467888888999999999999999999999999999842 115899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 123 ~di~~ 127 (128)
T cd04632 123 KDVLR 127 (128)
T ss_pred Hhhhc
Confidence 99986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.33 E-value=9.9e-12 Score=111.64 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=96.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++..|+.+.+.+........
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~i~~~~l~~~~~~~~~~~~~~----------- 59 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNE-----------GRVVGIVSEGDLIRKIYKGKGLFYVT----------- 59 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCC-----------CCEEEEEeHHHHHHHHhccCCccccc-----------
Confidence 56789999999999999998888999999987 89999999999987654321000000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+ .. ..+ + .........++.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+||+
T Consensus 60 ~~~~-~~----~~~-~-~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~iGvit~ 126 (132)
T cd04636 60 LLYS-VI----FLD-E-SKIKKLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD------GKLVGIISR 126 (132)
T ss_pred cccc-cc----ccc-h-HHHHHHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC------CEEEEEEEH
Confidence 0000 00 000 0 000001123677889899999999999999999999999999999986 899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 127 ~dl~~ 131 (132)
T cd04636 127 GDIIR 131 (132)
T ss_pred HHhhc
Confidence 99986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1e-11 Score=135.16 Aligned_cols=116 Identities=13% Similarity=0.180 Sum_probs=98.2
Q ss_pred cccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHH
Q 007394 417 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE 496 (605)
Q Consensus 417 M~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~ 496 (605)
|.+ +++++++++++.++.+.|.+++++.+||+|++ +.+++++|+|+.+|+.... .
T Consensus 106 mi~--dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~--------~~~GklvGIVT~~DL~~v~-~-------------- 160 (505)
T PLN02274 106 FVS--DPVVKSPSSTISSLDELKASRGFSSVCVTETG--------TMGSKLLGYVTKRDWDFVN-D-------------- 160 (505)
T ss_pred ccC--CCeeeCCCCcHHHHHHHHHhcCCceEEEEeCC--------CcCCeEEEEEEHHHHhhcc-c--------------
Confidence 667 88999999999999999999999999999872 1127999999999995321 0
Q ss_pred HhhhcchhHhhhhcCcccccccChhhhhhhcccccccccC--CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCc
Q 007394 497 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 574 (605)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~ 574 (605)
...+++++|+++ ..++++++++++++++|.+++.+.+||||+ +++
T Consensus 161 ----------------------------~~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-----~g~ 207 (505)
T PLN02274 161 ----------------------------RETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-----DGE 207 (505)
T ss_pred ----------------------------cCCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCe
Confidence 013477788766 679999999999999999999999999998 789
Q ss_pred eEEEEeHHHhHHHHhh
Q 007394 575 VVGILTRQDLRAFNIL 590 (605)
Q Consensus 575 lvGiITr~Dll~~~~~ 590 (605)
++|+||++|+++....
T Consensus 208 LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 208 LVDLVTRTDVKRVKGY 223 (505)
T ss_pred EEEEEEHHHHHHHhhC
Confidence 9999999999998764
|
|
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=107.24 Aligned_cols=112 Identities=23% Similarity=0.360 Sum_probs=93.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+++++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~---------------- 54 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDD-----------GRLVGIVSLDDIREILFDPSL---------------- 54 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCC-----------CCEEEEEEHHHHHHHHhcccc----------------
Confidence 67789999999999999998888999999987 899999999999765432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|++++.++++++++.++++.|.+.+.+.+||+|+ . +++++|++|+
T Consensus 55 ----------------------~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~---~-~~~~~Gvvt~ 108 (114)
T cd04613 55 ----------------------YDLVVASDIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDD---D-PGKLLGILSR 108 (114)
T ss_pred ----------------------cccEEHHHhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeC---C-CCEEEEEEEh
Confidence 0013467788889999999999999999999999999999974 1 3789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 109 ~di~~ 113 (114)
T cd04613 109 SDLLS 113 (114)
T ss_pred HHhhc
Confidence 99975
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=106.06 Aligned_cols=107 Identities=23% Similarity=0.313 Sum_probs=91.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++..|+.+.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~dl~~~~~~~~----------------- 53 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG------------GRVVGIISRRDVEKALRHGL----------------- 53 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence 6788999999999999999888889999987 68999999999976432210
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++.+++++.+++++|.+.+.+.+||+|+ |+++|+||+
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvvt~ 104 (110)
T cd04595 54 -----------------------GHAPVKDYMSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVED------GRLVGIVTR 104 (110)
T ss_pred -----------------------ccCcHHHHhcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEeC------CEEEEEEEh
Confidence 012466778888999999999999999999999999999986 799999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 105 ~di~~ 109 (110)
T cd04595 105 TDLLR 109 (110)
T ss_pred HHhhc
Confidence 99975
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.3e-11 Score=107.69 Aligned_cols=109 Identities=18% Similarity=0.316 Sum_probs=88.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+. +++++++|+++.+|+... .. .
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~--------~~~~~~~G~v~~~dl~~~-~~-~----------------- 55 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDG--------KSGGKLLGIVTSRDIDFL-TD-S----------------- 55 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCC--------CcCCEEEEEEEhHHhhhh-hc-c-----------------
Confidence 56788999999999999988888899999971 112899999999998531 00 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecC--CCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEE
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE--SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL 579 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~--~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiI 579 (605)
..+++++|.+.+.++.+ ++++.++++.|.+++.+.+||+|+ +++++|+|
T Consensus 56 ------------------------~~~v~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-----~~~~~Gvi 106 (114)
T cd04602 56 ------------------------ETPLSEVMTPREVLVVAPTGITLEEANEILRESKKGKLPIVND-----DGELVALV 106 (114)
T ss_pred ------------------------CCCHHHhcCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-----CCeEEEEE
Confidence 01356777777777766 999999999999999999999998 78999999
Q ss_pred eHHHhHH
Q 007394 580 TRQDLRA 586 (605)
Q Consensus 580 Tr~Dll~ 586 (605)
|++|+++
T Consensus 107 t~~di~~ 113 (114)
T cd04602 107 TRSDLKK 113 (114)
T ss_pred EHHHhhc
Confidence 9999875
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=105.44 Aligned_cols=108 Identities=21% Similarity=0.350 Sum_probs=91.7
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+++...+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~~l~~~~~~~~----------------- 52 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD------------GKLVGIVTLSDIAHAIARGL----------------- 52 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccc-----------------
Confidence 6778999999999999999888899999987 69999999999976533211
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 53 -----------------------~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 104 (110)
T cd04588 53 -----------------------ELAKVKDVMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-----EGRPVGIITR 104 (110)
T ss_pred -----------------------cccCHHHHhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEEh
Confidence 002355667788889999999999999999999999999987 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 105 ~dl~~ 109 (110)
T cd04588 105 TDILR 109 (110)
T ss_pred HHhhc
Confidence 99975
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.1e-11 Score=105.83 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=88.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++...++|.+ + ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~-----------~~~~G~v~~~dl~~~~~~~~~~--------------- 54 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-R-----------GELVGLLTFREVLQAMAQHGAG--------------- 54 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-C-----------CEEEEEEEHHHHHHHHHhcCCc---------------
Confidence 677899999999999999877776666654 4 7999999999997654321000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....+++++|++.+.++.+++++++++++|.+++.+.+||+|+ ++++|+||+
T Consensus 55 ----------------------~~~~~v~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------~~~~Gvvt~ 106 (112)
T cd04625 55 ----------------------VLDTTVRAIMNPEPIVASPDDSIDEVRRLMVERHLRYLPVLDG------GTLLGVISF 106 (112)
T ss_pred ----------------------hhcCCHHHHhCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------CEEEEEEEH
Confidence 0012466778788889999999999999999999999999986 899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 107 ~dl~~ 111 (112)
T cd04625 107 HDVAK 111 (112)
T ss_pred HHhhc
Confidence 99986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.6e-11 Score=106.65 Aligned_cols=111 Identities=23% Similarity=0.269 Sum_probs=91.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+...+.......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG------------NKLVGIFTSKDIALRVVAQGLDP-------------- 55 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHHhcCCCc--------------
Confidence 5678899999999999998888889999986 69999999999964332211000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|++++.++++++++.++++.|.+++.+++||+|+ +++++|+||+
T Consensus 56 -----------------------~~~~v~~i~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-----~~~~~Gvvs~ 107 (113)
T cd04587 56 -----------------------ESTLVERVMTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-----SGQVVGLLDV 107 (113)
T ss_pred -----------------------CcCCHHHhcCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-----CCCEEEEEEH
Confidence 012466778888899999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|++.
T Consensus 108 ~dl~~ 112 (113)
T cd04587 108 TKLTH 112 (113)
T ss_pred HHhcc
Confidence 99975
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=108.28 Aligned_cols=124 Identities=19% Similarity=0.246 Sum_probs=95.6
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++++.|.+.+++.+||+|++. ++++|+++.+|+.+.+.+....... ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~----------~~~~G~v~~~dl~~~~~~~~~~~~~---------~~- 61 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGT----------GKLVGIITATDILKYLGGGEKFNKI---------KT- 61 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCC----------CEEEEEEEHHHHHHHhhccchhccc---------cc-
Confidence 577889999999999999988888999998731 6999999999998765432100000 00
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
. . . ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 62 -----~------~----~--~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-----~~~~~Gvit~ 119 (125)
T cd04631 62 -----G------N----G--LEAINEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-----DGKLVGIVTE 119 (125)
T ss_pred -----c------c----c--chhhhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-----CCcEEEEEEH
Confidence 0 0 0 000123567778888999999999999999999999999999997 6899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 120 ~di~~~ 125 (125)
T cd04631 120 RDLLKA 125 (125)
T ss_pred HHhhcC
Confidence 999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-11 Score=105.93 Aligned_cols=109 Identities=20% Similarity=0.308 Sum_probs=91.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.+++++++++++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~~~--------------- 54 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD------------GRLVGIVTDRDLRNRVVAEGLD--------------- 54 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC------------CEEEEEEEhHHHHHHHhccCCC---------------
Confidence 6778999999999999998888889999987 6999999999997643321100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ |+++|++|+
T Consensus 55 -----------------------~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Giit~ 105 (111)
T cd04800 55 -----------------------PDTPVSEVMTAPPITIPPDATVFEALLLMLERGIHHLPVVDD------GRLVGVISA 105 (111)
T ss_pred -----------------------ccCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------CEEEEEEEH
Confidence 012466777788999999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04800 106 TDLLR 110 (111)
T ss_pred HHhhc
Confidence 99975
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-11 Score=105.49 Aligned_cols=111 Identities=23% Similarity=0.275 Sum_probs=91.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++..|++..........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~i~~~~l~~~~~~~~~~~-------------- 55 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN------------DRLVGIVTDRDIVVRAVAEGRDP-------------- 55 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEhHHHHHHHhhccCCc--------------
Confidence 6788999999999999999988999999987 69999999999863211100000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+++++|.+.+.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 107 (113)
T cd04622 56 -----------------------DTTTVGDVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-----DGRLVGIVSL 107 (113)
T ss_pred -----------------------ccCCHHHhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-----CCcEEEEEEH
Confidence 012366778888999999999999999999999999999987 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 108 ~di~~ 112 (113)
T cd04622 108 GDLAR 112 (113)
T ss_pred HHhhc
Confidence 99975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=105.03 Aligned_cols=99 Identities=45% Similarity=0.712 Sum_probs=86.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecC---CCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHh
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDE---GVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVR 498 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~---~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~ 498 (605)
....+++++++.++.+.+.+.+++.+||+|+ + ++++|+++.+|+.+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~-----------~~~~G~v~~~dl~~~~~----------------- 54 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEES-----------PRLVGYILRSQLVVALK----------------- 54 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCC-----------CEEEEEEeHHHHHHHHH-----------------
Confidence 5778899999999999999988889999988 5 89999999999954311
Q ss_pred hhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEE
Q 007394 499 EKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578 (605)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGi 578 (605)
++|.+++.++++++++.++++.|.+++.+.+||+++ |+++|+
T Consensus 55 --------------------------------~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------~~~~Gv 96 (105)
T cd04591 55 --------------------------------NYIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------GRLVGI 96 (105)
T ss_pred --------------------------------HhccCCCceECCCCcHHHHHHHHHHcCCCEEEEEEC------CeEEEE
Confidence 045677889999999999999999999999999964 899999
Q ss_pred EeHHHhHH
Q 007394 579 LTRQDLRA 586 (605)
Q Consensus 579 ITr~Dll~ 586 (605)
||++|+++
T Consensus 97 vt~~dl~~ 104 (105)
T cd04591 97 ITRKDLLK 104 (105)
T ss_pred EEhhhhhc
Confidence 99999976
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.5e-11 Score=109.60 Aligned_cols=117 Identities=15% Similarity=0.212 Sum_probs=88.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++.+|+.+....+......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~-----------~~~~Giv~~~dl~~~~~~~~~~~~~------------ 58 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSD-----------DNFIGVITAVDLLGEEPIKRIQEGG------------ 58 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEHHHHhhChhhHHHHHcC------------
Confidence 46788999999999999988888899999987 8999999999997521100000000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCcee------cCCCCHHHHHHHHHHcCCcEEEEccccccCCC-Cc
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV------IESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SP 574 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v------~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~ 574 (605)
......+++++|++++.++ .+++++.++++.|.+++.+.+||+|+ + |+
T Consensus 59 --------------------~~~~~~~v~~im~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-----~~~~ 113 (126)
T cd04640 59 --------------------ISRSELTVADVMTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-----EHHQ 113 (126)
T ss_pred --------------------CCchheEHHHhcCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-----CCCE
Confidence 0000123667776655433 37899999999999999999999998 5 78
Q ss_pred eEEEEeHHHhHH
Q 007394 575 VVGILTRQDLRA 586 (605)
Q Consensus 575 lvGiITr~Dll~ 586 (605)
++|+||++|+++
T Consensus 114 ~~G~it~~di~~ 125 (126)
T cd04640 114 IRGIISTSDIAR 125 (126)
T ss_pred EEEEEeHHHHhh
Confidence 999999999986
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=104.31 Aligned_cols=109 Identities=20% Similarity=0.293 Sum_probs=92.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+....+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~~l~~~~~~~~~---------------- 53 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD------------GRPLGIVTERDILRLLASGPD---------------- 53 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEeHHHHHHHHhcCCC----------------
Confidence 5678899999999999999888889999986 699999999999765432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 54 -----------------------~~~~v~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-----~~~~~Gvi~~ 105 (111)
T cd04611 54 -----------------------LQTPVGEVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-----DGELLGLLSQ 105 (111)
T ss_pred -----------------------CCcCHHHhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-----CCcEEEEEEh
Confidence 012466777788889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04611 106 TDLLQ 110 (111)
T ss_pred HHhhc
Confidence 99975
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-11 Score=104.09 Aligned_cols=109 Identities=21% Similarity=0.313 Sum_probs=91.5
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+...+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~---------------- 53 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD------------GRLVGIVTLADIRRVPAEGRE---------------- 53 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC------------CeEEEEEEHHHHHHHHhcCcc----------------
Confidence 6778999999999999999888889999987 689999999999764322100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||.
T Consensus 54 -----------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~it~ 105 (111)
T cd04612 54 -----------------------ATVLVGDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDD-----SGRLVGIVSR 105 (111)
T ss_pred -----------------------cccCHHHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-----CCCEEEEEEH
Confidence 002355667788899999999999999999999999999987 7999999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04612 106 SDLLR 110 (111)
T ss_pred HHhhh
Confidence 99975
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.2e-11 Score=138.10 Aligned_cols=161 Identities=18% Similarity=0.124 Sum_probs=115.1
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh--hh
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL--QE 488 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~--~~ 488 (605)
.+++|+|.+ ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+.+..-. ..
T Consensus 68 ~~V~dim~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~l~Givt~~di~~~~~~~~~~~~~~ 134 (546)
T PRK14869 68 PQVRDLEID--KPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-----------GKLLGLVSLSDLARAYMDILDPEILS 134 (546)
T ss_pred CcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHhhcchhhhh
Confidence 689999998 99999999999999999999999999999987 8999999999999876653210 00
Q ss_pred cccchhHHHhh------------------hc-----chhHh---hhhc--------------------C-----------
Q 007394 489 KRRTEEWEVRE------------------KF-----SWVEL---AERE--------------------G----------- 511 (605)
Q Consensus 489 ~~~~~~~~~~~------------------~~-----~~~~~---~~~~--------------------~----------- 511 (605)
.....-.++.+ .+ ....+ +.+. .
T Consensus 135 ~~~~t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d~~~~ai~~~~~~lIlt~g~~~~ 214 (546)
T PRK14869 135 KSPTSLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDREDIQLAAIEAGVRLLIITGGAPVS 214 (546)
T ss_pred hcCCCHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHHHHHHHHHcCCCEEEECCCCCCC
Confidence 00000000000 00 00000 0000 0
Q ss_pred ----------------cccccccChhhhhhhcccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCc
Q 007394 512 ----------------KIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 574 (605)
Q Consensus 512 ----------------~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~ 574 (605)
+..+...+........+++++|+ +++.+++++++++++.+.|.+++.+++||+|+ +|+
T Consensus 215 ~~v~~la~~~~i~ii~t~~dt~~t~~~l~~~~~V~~iM~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~-----~g~ 289 (546)
T PRK14869 215 EDVLELAKENGVTVISTPYDTFTTARLINQSIPVSYIMTTEDLVTFSKDDYLEDVKEVMLKSRYRSYPVVDE-----DGK 289 (546)
T ss_pred HHHHHHHHhCCCeEEEecccHHHHHHHhhcCCCHHHhccCCCcEEECCCCcHHHHHHHHHhcCCCceEEEcC-----CCC
Confidence 00111112222345578899999 89999999999999999999999999999998 799
Q ss_pred eEEEEeHHHhHHHHh
Q 007394 575 VVGILTRQDLRAFNI 589 (605)
Q Consensus 575 lvGiITr~Dll~~~~ 589 (605)
++|+||++|+++...
T Consensus 290 lvGiit~~dl~~~~~ 304 (546)
T PRK14869 290 VVGVISRYHLLSPVR 304 (546)
T ss_pred EEEEEEHHHhhcccc
Confidence 999999999998654
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.5e-11 Score=133.84 Aligned_cols=120 Identities=14% Similarity=0.163 Sum_probs=101.2
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 491 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~ 491 (605)
++++.|.+ +++++++++++.++.+.|.+++++.+||+|++ ..+++++|+|+.+|+... + .
T Consensus 97 ~~e~g~i~--dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~--------~~~gkLvGIVt~~DL~~~--~-~------- 156 (495)
T PTZ00314 97 RFENGFIM--DPYVLSPNHTVADVLEIKEKKGFSSILITVDG--------KVGGKLLGIVTSRDIDFV--K-D------- 156 (495)
T ss_pred cccccccc--CCeecCCCCCHHHHHHHHHHcCCcEEEEEeCC--------ccCCeEEEEEEHHHHhhc--c-c-------
Confidence 35667877 88999999999999999999999999999873 123799999999999521 0 0
Q ss_pred chhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 492 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
...+++++|++ ++.++++++++.|++++|.+++.+.+||+|+
T Consensus 157 ---------------------------------~~~~V~diMt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~--- 200 (495)
T PTZ00314 157 ---------------------------------KSTPVSEVMTPREKLVVGNTPISLEEANEVLRESRKGKLPIVND--- 200 (495)
T ss_pred ---------------------------------CCCCHHHhhCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC---
Confidence 01347788877 7889999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHh
Q 007394 570 AGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~ 589 (605)
+++++|+||++|+++...
T Consensus 201 --~g~liGIIT~~DIl~~~~ 218 (495)
T PTZ00314 201 --NGELVALVSRSDLKKNRG 218 (495)
T ss_pred --CCcEEEEEEehHhhhccc
Confidence 899999999999998754
|
|
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=104.23 Aligned_cols=109 Identities=17% Similarity=0.240 Sum_probs=90.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++++++++++++++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+.....
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~~---------------- 53 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG------------DPRLGIVTRTDLLDAVLLDGL---------------- 53 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC------------CeEEEEEEHHHHHHHHHcCCC----------------
Confidence 4678899999999999998888888999887 589999999999765432110
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.++|.+++..+++++++.++++.|.+++.+.+||+|+ ++++|+||+
T Consensus 54 ----------------------~~~~~i~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 105 (111)
T cd04589 54 ----------------------PSSTPVGEIATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG------GEVVGVLEQ 105 (111)
T ss_pred ----------------------CCCCCHHHHhCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC------CEEEEEEEh
Confidence 0012466778788889999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~dl~~ 110 (111)
T cd04589 106 TDLLS 110 (111)
T ss_pred HHhhc
Confidence 99975
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-11 Score=132.26 Aligned_cols=121 Identities=19% Similarity=0.314 Sum_probs=102.5
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+.++.|.+ +++++++++++.++.+.|.+++++.+||+|++ .++++++|+|+.+|+.... .
T Consensus 80 k~~~~~~~~--~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~--------~~~~~lvGIVt~rDL~~~~-~-------- 140 (450)
T TIGR01302 80 KRAENGIIS--DPVTISPETTVADVLELMERKGISGIPVVEDG--------DMTGKLVGIITKRDIRFVK-D-------- 140 (450)
T ss_pred ccccCceec--CceEeCCCCCHHHHHHHHHHcCCCEEEEEeCC--------CCCCeEEEEEEHHHHhhhh-c--------
Confidence 456788888 89999999999999999999999999999874 1124899999999995321 0
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
...+++++|+ +++.++++++++.++++.|.+++.+.+||+|+
T Consensus 141 ----------------------------------~~~~V~dvm~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe--- 183 (450)
T TIGR01302 141 ----------------------------------KGKPVSEVMTREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK--- 183 (450)
T ss_pred ----------------------------------CCCCHHHhhCCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC---
Confidence 0124677787 48899999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHh
Q 007394 570 AGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++|+++...
T Consensus 184 --~G~lvGiVT~~DIl~~~~ 201 (450)
T TIGR01302 184 --NGELVGLITMKDIVKRRK 201 (450)
T ss_pred --CCcEEEEEEhHHhhhccc
Confidence 899999999999998753
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.6e-11 Score=106.16 Aligned_cols=121 Identities=21% Similarity=0.305 Sum_probs=94.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+.+.+.+.. .... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~~~~-~~~~----~-~----- 58 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED------------NELVGVISDRDYLKAISPFL-GTAG----E-T----- 58 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC------------CeEEEEEEHHHHHHHHHHHh-cccc----c-h-----
Confidence 5778999999999999999888899999986 79999999999987554210 0000 0 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+. .....+++++|.+++.++++++++.++++.|.+++.+.+||+|+ +++++|++|+
T Consensus 59 -~~~~----------------~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-----~~~~~Gvit~ 116 (122)
T cd04637 59 -EKDL----------------ATLNRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDE-----NGQLIGIITW 116 (122)
T ss_pred -HHHH----------------HHHHhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-----CCCEEEEEEH
Confidence 0000 00112467788889999999999999999999999999999988 7899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 117 ~dll~~ 122 (122)
T cd04637 117 KDLLKY 122 (122)
T ss_pred HHhhhC
Confidence 999863
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.8e-11 Score=105.54 Aligned_cols=120 Identities=25% Similarity=0.285 Sum_probs=94.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|+ ++++|+++.+|+...........
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~i~~~~l~~~~~~~~~~~-------------- 55 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR------------GKLVGIVTDRDLKLASPSKATTL-------------- 55 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC------------CeEEEEEeHHHHHHhhhcccccc--------------
Confidence 5678899999999999999888899999987 69999999999976543211000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+.. ......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||+
T Consensus 56 ~~~~~~--------------~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvvt~ 116 (122)
T cd04585 56 DIWELY--------------YLLSKIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDD-----QGRLVGIITE 116 (122)
T ss_pred cchhhh--------------hhhcccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-----CCcEEEEEEH
Confidence 000000 000123577888889999999999999999999999999999997 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 117 ~di~~ 121 (122)
T cd04585 117 SDLFR 121 (122)
T ss_pred HHhhh
Confidence 99986
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=104.41 Aligned_cols=113 Identities=22% Similarity=0.301 Sum_probs=96.1
Q ss_pred cccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchh
Q 007394 415 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE 494 (605)
Q Consensus 415 diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~ 494 (605)
++|.+ +++++.++.++.++...|.+++...+||+++ ++++|+++.+|+.+.+......
T Consensus 3 ~~~~~--~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~------------~~l~Giit~~di~~~~~~~~~~-------- 60 (117)
T COG0517 3 DIMTK--DVITVKPDTSVRDALLLMSENGVSAVPVVDD------------GKLVGIITERDILRALAAGGKR-------- 60 (117)
T ss_pred ccccC--CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC------------CEEEEEEEHHHHHHHHhccCCc--------
Confidence 44556 8899999999999999999999999999987 4899999999998865442100
Q ss_pred HHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHH-cCCcEEEEccccccCCCC
Q 007394 495 WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQ-VGLRHLLVVPKYEAAGVS 573 (605)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~-~~~~~lpVVd~~~~~~~g 573 (605)
..++.++|++++.++.+++++.++.+.|.+ ++.+++||+|+ ++
T Consensus 61 -------------------------------~~~v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-----~~ 104 (117)
T COG0517 61 -------------------------------LLPVKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-----DG 104 (117)
T ss_pred -------------------------------cccHHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-----CC
Confidence 003677888889999999999999999999 79999999998 65
Q ss_pred -ceEEEEeHHHhH
Q 007394 574 -PVVGILTRQDLR 585 (605)
Q Consensus 574 -~lvGiITr~Dll 585 (605)
+++|++|++|++
T Consensus 105 ~~lvGivt~~di~ 117 (117)
T COG0517 105 GKLVGIITLSDIL 117 (117)
T ss_pred CeEEEEEEHHHcC
Confidence 999999999974
|
|
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=103.35 Aligned_cols=109 Identities=22% Similarity=0.363 Sum_probs=89.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|++. ++++|+++..|+.+...+.. .
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~----------~~~~G~v~~~~l~~~~~~~~-~--------------- 55 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDL----------DNIIGVVHVKDLLRALAEGE-E--------------- 55 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCC----------ceEEEEEEHHHHHHHHHcCC-C---------------
Confidence 678899999999999999988889999998631 68999999999977543211 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..++.++| +++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 56 ------------------------~~~~~~~~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit~ 105 (111)
T cd04590 56 ------------------------DLDLRDLL-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-----YGGTAGLVTL 105 (111)
T ss_pred ------------------------cCCHHHHh-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-----CCCEEEEeEH
Confidence 01233344 45678999999999999999999999999998 7999999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 106 ~di~~ 110 (111)
T cd04590 106 EDILE 110 (111)
T ss_pred HHhhc
Confidence 99975
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-11 Score=124.89 Aligned_cols=114 Identities=17% Similarity=0.212 Sum_probs=98.1
Q ss_pred ccccccccccCCC-eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 410 TLTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 410 ~~~v~diM~~~~~-v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
.++|+|+|.+ + +.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+.+.+....
T Consensus 154 ~~~v~~im~~--~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~-----------g~~~Givt~~dl~~~~~~~~---- 216 (268)
T TIGR00393 154 LVKVKDLMQT--TDLPLIAPTTSFKDALLEMSEKRLGSAIVCDEN-----------NQLVGVFTDGDLRRALLGGG---- 216 (268)
T ss_pred hhhHHHHhCC--CCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCC-----------CCEEEEEEcHHHHHHHhcCC----
Confidence 4789999988 7 8899999999999999998888999999987 89999999999976432210
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
+...+++++|.+++.++++++++.++++.|.+.+.+.+||+|+
T Consensus 217 -----------------------------------~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 259 (268)
T TIGR00393 217 -----------------------------------SLKSEVRDFMTLGPKTFKLDALLLEALEFLERRKITSLVVVDD-- 259 (268)
T ss_pred -----------------------------------cccCcHHHhCCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC--
Confidence 0013467888888999999999999999999999999999998
Q ss_pred cCCCCceEEEEe
Q 007394 569 AAGVSPVVGILT 580 (605)
Q Consensus 569 ~~~~g~lvGiIT 580 (605)
+|+++|+|+
T Consensus 260 ---~g~l~GvI~ 268 (268)
T TIGR00393 260 ---HNKVLGVLH 268 (268)
T ss_pred ---CCeEEEEEC
Confidence 789999985
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.2e-11 Score=105.20 Aligned_cols=106 Identities=19% Similarity=0.296 Sum_probs=88.8
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.... .
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~---~----------------- 51 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDD-----------GKLVGIVTNRDLRFET---D----------------- 51 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CEEEEEEEhhHeeecc---c-----------------
Confidence 67788999999999999998888999999987 8999999999884210 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecC-CCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEe
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIE-SMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 580 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~-~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiIT 580 (605)
...++.++|.+.+.++.+ ++++.++++.|.+.+.+.+||+|+ +++++|+||
T Consensus 52 -----------------------~~~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvi~ 103 (110)
T cd04601 52 -----------------------LDKPVSEVMTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-----EGKLKGLIT 103 (110)
T ss_pred -----------------------CCCCHHHhcccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-----CCCEEEEEE
Confidence 002355667666666677 999999999999999999999997 789999999
Q ss_pred HHHhHH
Q 007394 581 RQDLRA 586 (605)
Q Consensus 581 r~Dll~ 586 (605)
++|+++
T Consensus 104 ~~dil~ 109 (110)
T cd04601 104 VKDIEK 109 (110)
T ss_pred hhhhhc
Confidence 999975
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.6e-11 Score=103.66 Aligned_cols=110 Identities=22% Similarity=0.279 Sum_probs=91.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+.+.......
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~------------~~~~G~v~~~dl~~~~~~~~~~~-------------- 55 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN------------EKPVGIITERDLVKKVVSRNLKP-------------- 55 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC------------CEEEEEEEHHHHHHHHhhccCCc--------------
Confidence 5678899999999999999888899999986 58999999999977543211000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|++++.++++++++.++++.|.+.+.+.+||+|+ + +++|+||+
T Consensus 56 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~-~~~Gvi~~ 106 (112)
T cd04802 56 -----------------------REVPVGEVMSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-----D-ELVGIVTT 106 (112)
T ss_pred -----------------------ccCCHHHhcCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-----C-EEEEEEEh
Confidence 012466777788889999999999999999999999999997 4 89999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 107 ~di~~ 111 (112)
T cd04802 107 TDIVM 111 (112)
T ss_pred hhhhc
Confidence 99875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK03655 putative ion channel protein; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.3e-10 Score=122.15 Aligned_cols=180 Identities=13% Similarity=0.118 Sum_probs=124.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-h------hccchhhHHHHHHHHHHHhhhhhccccccccCCCCCC
Q 007394 152 VMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLI-N------QKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPS 224 (605)
Q Consensus 152 ~~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~ 224 (605)
..-+...+++|+++|+.+.+|.+++.+.++++-.. . ...+++.+..+.++|++++.+..+.|.-
T Consensus 10 ~~l~~~ailvG~~aGl~a~lf~~li~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gGllvgll~~~~~~~--------- 80 (414)
T PRK03655 10 LLLSLPALAIGIASSLILIVVMKIASVLQNLLWQRLPGTLGIAQDSPLWIIGMLTLTGIAVGLVIRFSPGH--------- 80 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccccchHHHHHHHHHHHHHHHHHHHcCCC---------
Confidence 34567789999999999999999999999876321 1 1223445555667788877765433311
Q ss_pred CCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccch
Q 007394 225 FPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLF 304 (605)
Q Consensus 225 ~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f 304 (605)
+ | .+...... .. ..+.. .....|++.+.+++++|.+.|++
T Consensus 81 --------~--G----------~~~~~~~~-------------~~---~~~~~----~~~~~~~~~~~l~l~~G~S~GrE 120 (414)
T PRK03655 81 --------A--G----------PDPATEPL-------------IG---APVPP----SALPGLLLALILGLAGGVSLGPE 120 (414)
T ss_pred --------C--C----------ChHHHHHH-------------hc---CCCCc----cHHHHHHHHHHHHHhcCCCCCch
Confidence 1 1 11101111 00 11121 12457889999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHH-hcCCc------chHHHHHHHHHHH
Q 007394 305 LPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLEL-TNNLL------LLPITMIVLLIAK 377 (605)
Q Consensus 305 ~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~-tg~~~------~l~p~~~a~~~a~ 377 (605)
.|++++||++|..+++.+.. ..+.....++|++|.+++++|+|++++++.+|. .+++. .++|+ +++.++.
T Consensus 121 GP~VqiGa~igs~~~r~~~~--~~~~~~l~~~gaAaGiaAaFnaPLaG~lFa~E~l~~~~~~~~~~~~~~~v-~aa~~a~ 197 (414)
T PRK03655 121 HPIMTVNIALAVAIGARLLP--RVNRMDWTILASAGTIGALFGTPVAAALIFSQTLNGSNEVPLWDRLFAPL-MAAAAGA 197 (414)
T ss_pred HHHHHHHHHHHHHHHHHhcc--CCChhHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999987732 234555788999999999999999999999996 46554 25554 4555677
Q ss_pred HHHhhc
Q 007394 378 TVGDSF 383 (605)
Q Consensus 378 ~v~~~l 383 (605)
.++..+
T Consensus 198 ~v~~~~ 203 (414)
T PRK03655 198 LTTGLF 203 (414)
T ss_pred HHHHHh
Confidence 666554
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.9e-11 Score=132.18 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=102.2
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 491 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~ 491 (605)
+++++|.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.... .
T Consensus 88 ~~~dim~~--~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~-----------g~lvGiVt~~DL~~~~---~------- 144 (486)
T PRK05567 88 RSESGVVT--DPVTVTPDTTLAEALALMARYGISGVPVVDEN-----------GKLVGIITNRDVRFET---D------- 144 (486)
T ss_pred hhhhcccC--CCeEeCCCCCHHHHHHHHHHhCCCEEEEEccC-----------CEEEEEEEHHHhhhcc---c-------
Confidence 46788988 99999999999999999999999999999987 8999999999994310 0
Q ss_pred chhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 492 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
...+++++|+ +++.++++++++.++++.|.+++.+.+||+|+
T Consensus 145 ---------------------------------~~~~V~dim~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe---- 187 (486)
T PRK05567 145 ---------------------------------LSQPVSEVMTKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD---- 187 (486)
T ss_pred ---------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC----
Confidence 0124667787 68889999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHh
Q 007394 571 GVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++|+++...
T Consensus 188 -~g~lvGiIT~~DLl~~~~ 205 (486)
T PRK05567 188 -NGRLKGLITVKDIEKAEE 205 (486)
T ss_pred -CCcEEEEEEhHHhhhhhh
Confidence 899999999999998753
|
|
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-11 Score=103.19 Aligned_cols=103 Identities=19% Similarity=0.292 Sum_probs=88.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~Giv~~~~l~~~~~-------------------- 49 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVED------------GKLVGIITSRDVRRAHP-------------------- 49 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEehHHhhcccc--------------------
Confidence 5677899999999999999888889999984 79999999999954210
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..++.++|.+++.++++++++.++++.|.+++.+.+||+|+ |+++|+||+
T Consensus 50 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~G~it~ 99 (105)
T cd04599 50 ------------------------NRLVADAMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE------RKLVGIITK 99 (105)
T ss_pred ------------------------cCCHHHHccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------CEEEEEEEH
Confidence 01255667788899999999999999999999999999986 899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|++.
T Consensus 100 ~~l~~ 104 (105)
T cd04599 100 GTIAL 104 (105)
T ss_pred HHhcc
Confidence 99873
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.4e-11 Score=129.44 Aligned_cols=126 Identities=19% Similarity=0.236 Sum_probs=110.0
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+...++.++++. +.+++++..++.++.+.|.+++.+.+.++|++ +.+.||||++|+.........
T Consensus 146 ~~~trv~~~~~~--~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~-----------~~~~GIvT~~dl~~~v~~~g~-- 210 (610)
T COG2905 146 FILTRVGEVKTL--PAVTVSPQASIQDAARKMKDEGVSSLVVLDDS-----------GPLLGIVTRKDLRSRVIADGR-- 210 (610)
T ss_pred HHHHHHHHHhcC--CCcccCccCcHHHHHHHHHhcCCCeEEEEcCC-----------CCccceeehHHHHHHHHhcCC--
Confidence 445678999999 99999999999999999999999988899887 899999999999765443211
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
+...+++++|+.++.++.+++.+.||+-+|.+++++|+||+++
T Consensus 211 ------------------------------------~~~~~V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e~- 253 (610)
T COG2905 211 ------------------------------------SKTQKVSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTED- 253 (610)
T ss_pred ------------------------------------CcccchhhhhccCceeecCcchHHHHHHHHHHhCCceeeeecC-
Confidence 1224689999999999999999999999999999999999986
Q ss_pred ccCCCCceEEEEeHHHhHHHHhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
|+++|+||.+||++....
T Consensus 254 -----gq~~Gilt~~dIl~l~s~ 271 (610)
T COG2905 254 -----GQPLGILTLTDILRLFSQ 271 (610)
T ss_pred -----CeeeEEeeHHHHHHhhCC
Confidence 999999999999987663
|
|
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=102.25 Aligned_cols=100 Identities=17% Similarity=0.135 Sum_probs=85.9
Q ss_pred eEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcch
Q 007394 424 ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSW 503 (605)
Q Consensus 424 ~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 503 (605)
.++++++++.++.+.+.+.+...+||+|+ ++++|+++.+|+.+...
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~------------~~~~G~v~~~~l~~~~~---------------------- 49 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY------------NKFLGAVYLKDIENATY---------------------- 49 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC------------CEEEEEEEHHHHhhhcc----------------------
Confidence 46789999999999999888899999986 68999999999854100
Q ss_pred hHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHH
Q 007394 504 VELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD 583 (605)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~D 583 (605)
.++.++|.+.+.++++++++.++++.|.+++.+.+||+|+ |+++|+||++|
T Consensus 50 -----------------------~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~iGvit~~d 100 (104)
T cd04594 50 -----------------------GDVVDYIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------GKFKGIVTLDS 100 (104)
T ss_pred -----------------------cchhhhhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------CEEEEEEEHHH
Confidence 1244567788889999999999999999999999999975 89999999999
Q ss_pred hHH
Q 007394 584 LRA 586 (605)
Q Consensus 584 ll~ 586 (605)
+++
T Consensus 101 l~~ 103 (104)
T cd04594 101 ILD 103 (104)
T ss_pred hhc
Confidence 875
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-11 Score=105.14 Aligned_cols=102 Identities=24% Similarity=0.237 Sum_probs=85.5
Q ss_pred EcCcccHHHHHHHHhcCC-----CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 007394 426 LSGIEKVSQIVDVLRNTT-----HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 500 (605)
Q Consensus 426 v~~~~tl~~a~~~l~~~~-----~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 500 (605)
+.+++++.++.+.|.+++ ...+||+|++ ++++|+++.+|+.+. . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~-----------~~~~G~v~~~~l~~~----~--~------------- 51 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEE-----------GRLLGVVSLRDLLLA----D--P------------- 51 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCC-----------CCEEEEEEHHHHhcC----C--C-------------
Confidence 567899999999998766 3678999987 899999999988531 0 0
Q ss_pred cchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEe
Q 007394 501 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 580 (605)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiIT 580 (605)
..+++++|.+++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+||
T Consensus 52 -------------------------~~~v~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~Gvit 101 (109)
T cd04606 52 -------------------------DTPVSDIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDE-----EGRLVGIIT 101 (109)
T ss_pred -------------------------cchHHHHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-----CCcEEEEEE
Confidence 01355677778889999999999999999999999999997 789999999
Q ss_pred HHHhHHH
Q 007394 581 RQDLRAF 587 (605)
Q Consensus 581 r~Dll~~ 587 (605)
++|+++.
T Consensus 102 ~~dll~~ 108 (109)
T cd04606 102 VDDVIDV 108 (109)
T ss_pred hHHhhhh
Confidence 9999875
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd03683 ClC_1_like ClC-1-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-11 Score=128.08 Aligned_cols=183 Identities=14% Similarity=0.145 Sum_probs=124.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---cch----hhHHHHHHHHHHHhhhh-hccccccccCCCCCCCCC
Q 007394 156 IPVTLIGIIGGILGGLYNHILHKVLRLYNLINQK---GKM----HKLLLALSVSVFTSVCQ-YCLPFLADCKACDPSFPE 227 (605)
Q Consensus 156 ~~~illgi~~gl~g~~f~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~l~~~~~-~~~p~~~~~~~~~~~~~~ 227 (605)
...+++|++.|+++.+|..+.++..+++..+-.. ..+ ..++.+++++++.+.+. ++.|..
T Consensus 3 ~~~~l~gv~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~p~a------------ 70 (426)
T cd03683 3 LFLALLGILMALISIAMDFAVEKLLNARRWLYSLLTGNSLLQYLVWVAYPVALVLFSALFCKYISPQA------------ 70 (426)
T ss_pred EeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcc------------
Confidence 4567899999999999999999998887644221 111 12344555555555444 344543
Q ss_pred CCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCC-CCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhH
Q 007394 228 TCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSN-TPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLP 306 (605)
Q Consensus 228 ~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~P 306 (605)
.| +| -.++ +...+.. ..+.+++. -++.|++.+.+++|+|.+-|++.|
T Consensus 71 ----~G-sG-----------Ip~v------------~~~l~g~~~~~~l~~r----~~~~k~i~~~l~i~sG~svGrEGP 118 (426)
T cd03683 71 ----VG-SG-----------IPEM------------KTILRGVVLPEYLTFK----TLVAKVIGLTCALGSGLPLGKEGP 118 (426)
T ss_pred ----CC-CC-----------HHHH------------HHHHcCCCccccccHH----HHHHHHHHHHHHHhcCCCCCCCCc
Confidence 11 11 1111 1111110 01112222 345799999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcc-----cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHH
Q 007394 307 IILMGSAYGRLLGMAMGSY-----TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKT 378 (605)
Q Consensus 307 sl~iGa~~G~~~g~~~~~~-----~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~ 378 (605)
+.++||++|..++++.... ...+...+..+|++|.++++.++|++++++.+|.. .+++ .+.|.+++++++..
T Consensus 119 ~v~iGa~i~~~~~~~~~~~~~~~~~~~~rr~Li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~i~s~~a~~ 198 (426)
T cd03683 119 FVHISSIVAALLSKLTTFFSGIYENESRRMEMLAAACAVGVACTFGAPIGGVLFSIEVTSTYFAVRNYWRGFFAATCGAF 198 (426)
T ss_pred hHHHHHHHHHHHHhhcccccccccCHHHHHHHHHhHhhhhhHHhcCCcceeeEEEeehhhhhccHHHHHHHHHHHHHHHH
Confidence 9999999999999987521 11233468999999999999999999999999976 4444 56778888888887
Q ss_pred HHhh
Q 007394 379 VGDS 382 (605)
Q Consensus 379 v~~~ 382 (605)
+.+.
T Consensus 199 v~~~ 202 (426)
T cd03683 199 TFRL 202 (426)
T ss_pred HHHH
Confidence 7654
|
This CD includes isoforms ClC-0, ClC-1, ClC-2 and ClC_K. ClC-1 is expressed in skeletal muscle and its mutation leads to both recessively and dominantly-inherited forms of muscle stiffness or myotonia. ClC-K is exclusively expressed in kidney. Similarly, mutation of ClC-K leads to nephrogenic diabetes insipidus in mice and Bartter's syndrome in human. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. This domain is found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins, that perform a variety of functions including cell volume regulation, regulation of intracelluar chloride concentration, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles and transepithelia |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.1e-11 Score=102.38 Aligned_cols=104 Identities=24% Similarity=0.418 Sum_probs=89.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.+++.+.++.++.+.|.+.+.+.+||+|+ ++++|+++..|+... . .
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~------------~~~~g~v~~~~l~~~--~----~-------------- 50 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN------------GKVVGIVSARDLLGK--D----P-------------- 50 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhcc--C----c--------------
Confidence 6788999999999999998888788999886 699999999998531 0 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+++++|.+.+.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||+
T Consensus 51 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-----~g~~~Gvi~~ 101 (107)
T cd04610 51 ------------------------DETVEEIMSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-----NNNLVGIITN 101 (107)
T ss_pred ------------------------cccHHHhCCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-----CCeEEEEEEH
Confidence 01356777788889999999999999999999999999998 7899999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 102 ~di~~ 106 (107)
T cd04610 102 TDVIR 106 (107)
T ss_pred HHhhc
Confidence 99985
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG0038 EriC Chloride channel protein EriC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.8e-10 Score=122.69 Aligned_cols=99 Identities=22% Similarity=0.284 Sum_probs=88.1
Q ss_pred HHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-C-
Q 007394 285 ILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-N- 362 (605)
Q Consensus 285 ~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg-~- 362 (605)
..|++.+.+++++|.+.|++.|+.++|+++|..++++++.. ..+...+.++|++|.+++.+++|++++++++|+.. .
T Consensus 114 ~vk~~~~~l~i~sG~s~GrEGP~vqiga~~g~~~~~~l~~~-~~~~r~Ll~~GaAaGlaaaF~aPlagvlF~~E~l~~~~ 192 (443)
T COG0038 114 PVKLVATLLTIGSGASLGREGPSVQIGAAIGSLLGRLLKLS-REDRRILLAAGAAAGLAAAFNAPLAGALFAIEVLYGRF 192 (443)
T ss_pred HHHHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhhc
Confidence 35999999999999999999999999999999999999532 34667899999999999999999999999999763 3
Q ss_pred Cc--chHHHHHHHHHHHHHHhhcC
Q 007394 363 LL--LLPITMIVLLIAKTVGDSFN 384 (605)
Q Consensus 363 ~~--~l~p~~~a~~~a~~v~~~l~ 384 (605)
+. .+.|+++++++++.+.+.++
T Consensus 193 ~~~~~l~p~~vaa~va~~v~~~~~ 216 (443)
T COG0038 193 LEYRALVPVLVAAVVALLVAGLFG 216 (443)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHcC
Confidence 43 58899999999999998873
|
|
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=8.5e-11 Score=126.72 Aligned_cols=133 Identities=21% Similarity=0.325 Sum_probs=111.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+.+.+|+++|+|+.++.+++.+.+++++.+.+.+++|+.+||++++ .+.++|+++.+|++..+.+...
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~----------~D~iiGiv~~Kdll~~~~~~~~-- 270 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGD----------LDNIIGIVHVKDLLRALLDGQS-- 270 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCC----------CCcEEEEEEHHHHHHHHhcCcc--
Confidence 6788999999999999999999999999999999999999999942 2789999999999876544210
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
. ......+ ++|+.+++++++.++++.|++.+.+...|+|+
T Consensus 271 ~--------------------------------------~~~~~~~-~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE- 310 (429)
T COG1253 271 D--------------------------------------LDLRVLV-RPPLFVPETLSLSDLLEEFREERTHMAIVVDE- 310 (429)
T ss_pred c--------------------------------------cchhhcc-cCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-
Confidence 0 0011111 37889999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCCc
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPHL 596 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~~ 596 (605)
.|.+.|+||.+|+++....+...+-
T Consensus 311 ----yG~~~GlVTleDIiEeIvGei~de~ 335 (429)
T COG1253 311 ----YGGVEGLVTLEDIIEEIVGEIPDEH 335 (429)
T ss_pred ----CCCeEEEeEHHHHHHHHhCCCcCcc
Confidence 8999999999999999987665443
|
|
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-11 Score=101.94 Aligned_cols=109 Identities=24% Similarity=0.311 Sum_probs=88.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+++.+.+||+|+ ++++|+++.+|+.+.+......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------------~~~~G~v~~~dl~~~~~~~~~~--------------- 54 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------------GRVVGSIDESDLLDALIEGKAK--------------- 54 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------------CeeEEEEeHHHHHHHHhccccc---------------
Confidence 5678899999999999999988899999986 6899999999998754321100
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...++.++|.+++.++++++++.++.++|.+ . ..+||+|+ +++++|+||+
T Consensus 55 -----------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-----~~~~~Gvvt~ 104 (110)
T cd04609 55 -----------------------FSLPVREVMGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE-----GGKFVGIITR 104 (110)
T ss_pred -----------------------cCcCHHHHhcCCCceeCCCCcHHHHHHHHHh-C-CceeEEec-----CCeEEEEEeH
Confidence 0123556677888899999999999999988 3 34789987 7899999999
Q ss_pred HHhHHH
Q 007394 582 QDLRAF 587 (605)
Q Consensus 582 ~Dll~~ 587 (605)
+|++++
T Consensus 105 ~di~~~ 110 (110)
T cd04609 105 ADLLKY 110 (110)
T ss_pred HHhhcC
Confidence 999863
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.23 E-value=1e-10 Score=100.49 Aligned_cols=111 Identities=26% Similarity=0.378 Sum_probs=92.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+++.+||+|++ ++++|+++.+|+...+.+.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~G~v~~~~l~~~~~~~~~~~-------------- 56 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDD-----------GRLVGIVTERDLLRALAEGGLDP-------------- 56 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCC-----------CCEEEEEeHHHHHHHHHhccCCc--------------
Confidence 56788999999999999998888999999987 89999999999977544311000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
...+.++|..++.++++++++.++.+.|.+.+.+.+||+|+ +++++|++|+
T Consensus 57 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~i~~ 107 (113)
T cd02205 57 ------------------------LVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-----EGRLVGIVTR 107 (113)
T ss_pred ------------------------cccHHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEEH
Confidence 00144566778889999999999999999999999999998 7999999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 108 ~dl~~ 112 (113)
T cd02205 108 SDILR 112 (113)
T ss_pred HHhhc
Confidence 99975
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd01036 ClC_euk Chloride channel, ClC | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.2e-11 Score=127.27 Aligned_cols=100 Identities=19% Similarity=0.174 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcc------------cCCCcHHHHHHHHHhhhhhhcchhHH
Q 007394 284 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY------------TNIDQGLYAVLGAASLMAGSMRMTVS 351 (605)
Q Consensus 284 ~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~------------~~~~~~~~a~~G~aa~~a~~~~~pls 351 (605)
++.|++.+.+++|+|.+.|.+.|+.++||++|..+++.+... ...+...+..+|++|.++++.++|++
T Consensus 88 ~~~K~i~~~l~igsG~svGrEGP~V~iGa~ig~~l~~~~~~~~~~~~~~~~~~~~~~~~r~ll~aGaaAGlaAaF~APia 167 (416)
T cd01036 88 LIAKTISCICAVASGLPLGKEGPLVHLGAMIGAGLLQGRSRTLGCHVHLFQLFRNPRDRRDFLVAGAAAGVASAFGAPIG 167 (416)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCchHHHHHHHHHHHHhhcccccccccchhhhccCHHHHHHHHHHHhhcchhhccCCcce
Confidence 458999999999999999999999999999999999976421 12345679999999999999999999
Q ss_pred HHHHHHHHhc-CCc--chHHHHHHHHHHHHHHhhc
Q 007394 352 LCVIFLELTN-NLL--LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 352 ~~vi~~E~tg-~~~--~l~p~~~a~~~a~~v~~~l 383 (605)
++++.+|.+. +++ .+.+++++++++..+.+.+
T Consensus 168 GvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~ 202 (416)
T cd01036 168 GLLFVLEEVSTFFPVRLAWRVFFAALVSAFVIQIY 202 (416)
T ss_pred eeeeeeHHhhccccHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999874 333 5788889999999888765
|
These domains are found in the eukaryotic halogen ion (Cl-, Br- and I-) channel proteins that perform a variety of functions including cell volume regulation, membrane potential stabilization, charge compensation necessary for the acidification of intracellular organelles, signal transduction and transepithelial transport. They are also involved in many pathophysiological processes and are responsible for a number of human diseases. These proteins belong to the ClC superfamily of chloride ion channels, which share the unique double-barreled architecture and voltage-dependent gating mechanism. The gating is conferred by the permeating anion itself, acting as the gating charge. Some proteins possess long C-terminal cytoplasmic regions containing two CBS (cystathionine beta synthase) domains of putative regulatory function. |
| >cd03684 ClC_3_like ClC-3-like chloride channel proteins | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=124.64 Aligned_cols=176 Identities=16% Similarity=0.165 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhh-hccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 162 GIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQ-YCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 162 gi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
|++.|+++..+..+.+++..++.... .+...++.+++++++.+.+. ++.|.. .|. |
T Consensus 1 g~~~g~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~~~l~~~~~p~a----------------~Gs-G---- 57 (445)
T cd03684 1 GIAIGLIAGLIDIIASWLSDLKEGYC--NYIIYVLLALLFAFIAVLLVKVVAPYA----------------AGS-G---- 57 (445)
T ss_pred CHhHHHHHHHHHHHHHHHHHHHHhHH--HHHHHHHHHHHHHHHHHHHHHhcCccc----------------cCC-C----
Confidence 67899999999999998888775432 11223444455555555443 444443 111 1
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCC-CCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSN-TPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
-.+ ++..++.. ..+.+++. -.+.|++.+.+++++|.+.|++.|+.++||++|..++
T Consensus 58 -------Ip~------------v~~~l~g~~~~~~~~~~----~~~~k~l~~~l~i~~G~s~GrEGP~v~iGa~ia~~l~ 114 (445)
T cd03684 58 -------IPE------------IKTILSGFIIRGFLGKW----TLLIKSVGLVLAVASGLSLGKEGPLVHIATCVGNIIS 114 (445)
T ss_pred -------HHH------------HHHHHcCccccccccHH----HHHHHHHhhHHhhccCCcCCCCCCcchHHHHHHHHHH
Confidence 111 11111110 01122232 2457999999999999999999999999999999999
Q ss_pred HHhhc--ccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--chHHHHHHHHHHHHHHhhc
Q 007394 320 MAMGS--YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 320 ~~~~~--~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~l~p~~~a~~~a~~v~~~l 383 (605)
+++.. ....+...+..+|++|.+++++++|++++++.+|.. .+++ .+.|.++++++|+.+.+.+
T Consensus 115 ~~~~~~~~~~~~~r~li~~GaaAGlaAaF~APi~G~lFalE~l~~~~~~~~l~~~~~as~~a~~v~~~~ 183 (445)
T cd03684 115 RLFPKYRRNEAKRREILSAAAAAGVAVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALVAAFTLKSL 183 (445)
T ss_pred HHHHHhccCHHHHHHHHHHHHhhhhHHhcCCccchhhhhhHhhhhhccHHHHHHHHHHHHHHHHHHHHh
Confidence 98853 223456778999999999999999999999999965 4544 4788899999999888754
|
This CD includes ClC-3, ClC-4, ClC-5 and ClC-Y1. ClC-3 was initially cloned from rat kidney. Expression of ClC-3 produces outwardly-rectifying Cl currents that are inhibited by protein kinase C activation. It has been suggested that ClC-3 may be a ubiquitous swelling-activated Cl channel that has very similar characteristics to those of native volume-regulated Cl currents. The function of ClC-4 is unclear. Studies of human ClC-4 have revealed that it gives rise to Cl currents that rapidly activate at positive voltages, and are sensitive to extracellular pH, with currents decreasing when pH falls below 6.5. ClC-4 is broadly distributed, especially in brain and heart. ClC-5 is predominantly expressed in the kidney, but can be found in the brain and liver. Mutations in the ClC-5 gene cause certain hereditary diseases, including Dent's disease, an X-chromosome linked syndrome characterised by proteinuria, hypercalciuria, and kidn |
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=99.21 E-value=1e-10 Score=102.95 Aligned_cols=119 Identities=24% Similarity=0.333 Sum_probs=93.2
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+|+.+...... .....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~-----------~~~~G~v~~~~l~~~~~~~~-~~~~~----------- 58 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEE-----------GRLVGIVTDRDLRDASPSPF-TTLSE----------- 58 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCC-----------CcEEEEEEHHHHHHHhhhhc-ccchh-----------
Confidence 56788999999999999998888899999987 89999999999976432110 00000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.+. ......+++++|.+.+.++++++++.++++.|.+.+.+.+||+|+ ++++|++|.
T Consensus 59 --~~~---------------~~~~~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~------~~~~Gvv~~ 115 (121)
T cd04584 59 --HEL---------------YLLLKMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED------GRLVGIITE 115 (121)
T ss_pred --hhh---------------hhhcCcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC------CEEEEEEEH
Confidence 000 001123467778888899999999999999999999999999986 789999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 116 ~di~~ 120 (121)
T cd04584 116 TDLLR 120 (121)
T ss_pred HHhhc
Confidence 99986
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=1e-10 Score=102.92 Aligned_cols=119 Identities=23% Similarity=0.306 Sum_probs=92.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++..|+.+.+.... ..+.. .
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~------------~~~~G~v~~~~l~~~~~~~~-~~~~~---------~- 58 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG------------GKLVGIVTEKDIADALRSFR-PLVRD---------R- 58 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC------------CEEEEEEchHHHHHhhhhhh-hcccc---------h-
Confidence 5678899999999999999888899999986 79999999999977544211 00000 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
.. .......++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 59 ---~~--------------~~~~~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------~~~~Gvi~~ 115 (121)
T cd04633 59 ---HQ--------------ERRIRNLPVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD------GKLVGIVTR 115 (121)
T ss_pred ---hh--------------hhhhhccCHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC------CEEEEEEEH
Confidence 00 0000123466778888999999999999999999999999999986 799999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 116 ~dl~~ 120 (121)
T cd04633 116 TDILR 120 (121)
T ss_pred HHhhc
Confidence 99985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd01034 EriC_like ClC chloride channel family | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.2e-10 Score=120.94 Aligned_cols=100 Identities=14% Similarity=0.161 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-C
Q 007394 284 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN-N 362 (605)
Q Consensus 284 ~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg-~ 362 (605)
.+.|++.+.+|+++|.+.|.+.|+.++|+++|..+++.++.....+...+..+|++|.+++++++|++++++.+|... +
T Consensus 80 ~~~k~i~~~l~i~~G~s~GrEGP~v~iga~i~~~~~~~~~~~~~~~~r~li~~GaaAGlaa~F~aPlaG~lF~~E~~~~~ 159 (390)
T cd01034 80 AVGKILLTLLGLLGGASVGREGPSVQIGAAVMLAIGRRLPKWGGLSERGLILAGGAAGLAAAFNTPLAGIVFAIEELSRD 159 (390)
T ss_pred HHHHHHHHHHHHHcCCCcCCcccHHHHHHHHHHHHHHHcccCchHHHHHHHHHHHHHhHHHHhCCcchhHHHHHHHhhhh
Confidence 457999999999999999999999999999999999998643235667899999999999999999999999999764 3
Q ss_pred C--cchHHHHHHHHHHHHHHhhc
Q 007394 363 L--LLLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 363 ~--~~l~p~~~a~~~a~~v~~~l 383 (605)
+ ....+++++++++..+++.+
T Consensus 160 ~~~~~~~~~~~~~~~a~~~~~~~ 182 (390)
T cd01034 160 FELRFSGLVLLAVIAAGLVSLAV 182 (390)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Confidence 3 35667788888888877654
|
These protein sequences, closely related to the ClC Eric family, are putative halogen ion (Cl-, Br- and I-) transport proteins found in eubacteria. They belong to the ClC superfamily of chloride ion channels, which share a unique double-barreled architecture and voltage-dependent gating mechanism. This superfamily lacks any structural or sequence similarity to other known ion channels and exhibit unique properties of ion permeation and gating. The voltage-dependent gating is conferred by the permeating anion itself, acting as the gating charge. |
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.7e-10 Score=99.11 Aligned_cols=104 Identities=26% Similarity=0.337 Sum_probs=88.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++.+.+.+.+++.+||+|++ ++++|+++.+++... . .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~v~~~~l~~~--~-~----------------- 50 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKS-----------GELVGIITRKDLLRN--P-E----------------- 50 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEHHHHHhc--c-c-----------------
Confidence 57788999999999999998888899999987 899999999998531 0 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..++.++|++++.+++++++++++++.|.+.+.+.+||+|+ ++++|+||+
T Consensus 51 ------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------~~~~G~it~ 100 (106)
T cd04638 51 ------------------------EEQLALLMTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------GKLVGIVTV 100 (106)
T ss_pred ------------------------cchHHHHhcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEH
Confidence 01244556778889999999999999999999999999986 689999999
Q ss_pred HHhHH
Q 007394 582 QDLRA 586 (605)
Q Consensus 582 ~Dll~ 586 (605)
+|+++
T Consensus 101 ~d~~~ 105 (106)
T cd04638 101 ADIVR 105 (106)
T ss_pred HHhhc
Confidence 99875
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.5e-10 Score=116.10 Aligned_cols=132 Identities=20% Similarity=0.299 Sum_probs=112.3
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++++|.|+|.++.++..+..+++.+++++.+.+..|+.+||-.++. +..+|++..+|+++++.++.-
T Consensus 197 Le~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~----------DnIiGvlh~r~llr~l~e~~~-- 264 (423)
T COG4536 197 LENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDL----------DNIIGVLHVRDLLRLLNEKNE-- 264 (423)
T ss_pred cccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCCh----------hHhhhhhhHHHHHHHhhccCc--
Confidence 77899999999998999999999999999999999999999987753 679999999999998876431
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
++-.++++ + -..|+++++++++.+-+..|++++-+.-.|||+
T Consensus 265 -------------~~k~d~~~-----------------------~-a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE- 306 (423)
T COG4536 265 -------------FTKEDILR-----------------------A-ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE- 306 (423)
T ss_pred -------------ccHhHHHH-----------------------H-hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-
Confidence 11112221 0 267889999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
.|.+.|+||.+|+++....+..
T Consensus 307 ----YG~i~GLVTLEDIlEEIVGdft 328 (423)
T COG4536 307 ----YGDIQGLVTLEDILEEIVGDFT 328 (423)
T ss_pred ----cCcEEeeeeHHHHHHHHhcccc
Confidence 8999999999999998876554
|
|
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-10 Score=100.05 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=89.4
Q ss_pred CeeEEcCcccHHHHHHHHhcCC-CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhh
Q 007394 422 PVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREK 500 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~-~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~ 500 (605)
++.++++++++.++.+.+.+.+ ++.+||+|+ ++++|+++.+|+.+.+.+.. ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~~l~~~~~~~~-~~------------- 55 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD------------GRPVGLIMREALMELLSTPY-GR------------- 55 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC------------CeeEEEEEHHHHHHHHhchh-hH-------------
Confidence 5667899999999999998776 789999987 68999999999976543210 00
Q ss_pred cchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCc---EEEEccccccCCCCceEE
Q 007394 501 FSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLR---HLLVVPKYEAAGVSPVVG 577 (605)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~---~lpVVd~~~~~~~g~lvG 577 (605)
+ .....++.++|.+++.++++++++.++++.|.+++.+ ..+|+|+ +|+++|
T Consensus 56 ----~-----------------~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-----~~~~~G 109 (119)
T cd04598 56 ----A-----------------LYGKKPVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-----EGRYLG 109 (119)
T ss_pred ----H-----------------HHcCCcHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-----CCeEEE
Confidence 0 0011346778888999999999999999999998864 3468887 799999
Q ss_pred EEeHHHhHH
Q 007394 578 ILTRQDLRA 586 (605)
Q Consensus 578 iITr~Dll~ 586 (605)
+||++|+++
T Consensus 110 vvs~~di~~ 118 (119)
T cd04598 110 IGTVKDLLR 118 (119)
T ss_pred EEEHHHHhc
Confidence 999999975
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.1e-10 Score=103.57 Aligned_cols=136 Identities=23% Similarity=0.298 Sum_probs=96.1
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc---c-cc-hhHH
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK---R-RT-EEWE 496 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~---~-~~-~~~~ 496 (605)
+++++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+.......+. + .. ..+.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------------~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG------------GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELP 69 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------------CeEEEEecHHHHHHHHHhccCccccccCCcceeeecc
Confidence 6788999999999999999999999999986 6899999999998766432210000 0 00 0000
Q ss_pred HhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceE
Q 007394 497 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVV 576 (605)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lv 576 (605)
......+.+.... .++ ....++.++|.+++.++++++++.++++.|.+.+.+.+||+|+ ++++
T Consensus 70 ~~~~~~~~~~~~~----------~~~-~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------~~~~ 132 (143)
T cd04634 70 LREFINWEETKRA----------LTD-AGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED------GRLV 132 (143)
T ss_pred chheeehHHHHHH----------HHH-HhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEE
Confidence 0000111111000 000 0124577888899999999999999999999999999999986 7899
Q ss_pred EEEeHHHhHH
Q 007394 577 GILTRQDLRA 586 (605)
Q Consensus 577 GiITr~Dll~ 586 (605)
|+||++|+++
T Consensus 133 Gvvt~~dl~~ 142 (143)
T cd04634 133 GIVTRGDIIE 142 (143)
T ss_pred EEEEHHHhhc
Confidence 9999999874
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.5e-10 Score=123.05 Aligned_cols=127 Identities=23% Similarity=0.236 Sum_probs=109.1
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhc-----CCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhch
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRN-----TTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 484 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~-----~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~ 484 (605)
+-+++.+|++ +.++++++.|++++++.+++ .....++|+|++ ++++|+++.++++.. +
T Consensus 131 e~taG~~Mt~--e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~-----------~~L~Gvvsl~~Ll~a--~-- 193 (451)
T COG2239 131 EDTAGRIMTT--EFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEK-----------GKLLGVVSLRDLLTA--E-- 193 (451)
T ss_pred hhhhhcccee--eeEEeccCcCHHHHHHHHHHhcccccccceEEEECCc-----------cceEEEeeHHHHhcC--C--
Confidence 3578999999 99999999999999999984 345688999998 899999999998531 0
Q ss_pred hhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEc
Q 007394 485 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 564 (605)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVV 564 (605)
....++++|.+.+.++.++++.+++.++|++++.-.+|||
T Consensus 194 ----------------------------------------~~~~i~~im~~~~~~V~~~~dqeevA~~~~~ydl~a~PVV 233 (451)
T COG2239 194 ----------------------------------------PDELLKDLMEDDVVSVLADDDQEEVARLFEKYDLLAVPVV 233 (451)
T ss_pred ----------------------------------------cHhHHHHHhcccceeecccCCHHHHHHHHHHhCCeecceE
Confidence 0124778888999999999999999999999999999999
Q ss_pred cccccCCCCceEEEEeHHHhHHHHhhhhCCCcCC
Q 007394 565 PKYEAAGVSPVVGILTRQDLRAFNILTAFPHLER 598 (605)
Q Consensus 565 d~~~~~~~g~lvGiITr~Dll~~~~~~~~~~~~~ 598 (605)
|+ +++++|+||.+|+++...++..+...+
T Consensus 234 d~-----~~~LiG~itiDDiidvi~eEa~eDi~~ 262 (451)
T COG2239 234 DE-----DNRLIGIITIDDIIDVIEEEATEDILR 262 (451)
T ss_pred CC-----CCceeeeeeHHHHHHHHHHHHHHHHHH
Confidence 99 899999999999999988876655443
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.4e-10 Score=104.23 Aligned_cols=133 Identities=21% Similarity=0.320 Sum_probs=110.9
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
..+++|+|+|.|+...++++.+.++.+.+..+.+..|+.|||+.++. +.+.|++..+||++++....-
T Consensus 64 iadl~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edk----------D~v~GIL~AKDLL~~~~~~~~-- 131 (293)
T COG4535 64 IADLRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK----------DHVEGILLAKDLLPFMRSDAE-- 131 (293)
T ss_pred HHHhhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccCCc----------hhhhhhhhHHHHHHHhcCCcc--
Confidence 34779999999988999999999999999999999999999998753 789999999999987654210
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
. .+++++ -++...|+++-.+...++-|+..+-+...|||+
T Consensus 132 ------------~--------------------------F~i~~l-LRPav~VPESKrvd~lLkeFR~~RnHMAIViDE- 171 (293)
T COG4535 132 ------------P--------------------------FDIKEL-LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE- 171 (293)
T ss_pred ------------c--------------------------ccHHHh-cccceecccchhHHHHHHHHHhhcCceEEEEec-
Confidence 1 122232 266778999999999999999999999999999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCCc
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPHL 596 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~~ 596 (605)
.|-+.|.||.+|+++....+...+.
T Consensus 172 ----fGgVsGLVTIEDiLEqIVGdIEDE~ 196 (293)
T COG4535 172 ----FGGVSGLVTIEDILEQIVGDIEDEY 196 (293)
T ss_pred ----cCCeeeeEEHHHHHHHHhccccccc
Confidence 7999999999999998876555443
|
|
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-09 Score=95.49 Aligned_cols=116 Identities=13% Similarity=0.104 Sum_probs=81.0
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++.+.......... .+.-...+..
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~-----------g~l~Givt~~Dl~~~~~~~~~~~~~~-~~~~~~~~~~ 69 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSD-----------DFLEGILTLGDIQRFLFTNKTTRVQP-EDETKQTNTC 69 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHhhcccccccc-chhhcccccc
Confidence 67889999999999999998888999999987 89999999999988665422111000 0000000000
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
...+++. ...+.++|.+++.++.+++++.+|++.|.+++.+.+||+|+
T Consensus 70 ~v~~i~~-----------------~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 70 LVSSVCT-----------------KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred cHHHHhh-----------------hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 0001110 01133445677889999999999999999999999999987
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.2e-09 Score=81.27 Aligned_cols=55 Identities=29% Similarity=0.425 Sum_probs=51.9
Q ss_pred ccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 530 HPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 530 ~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+++|++++.++++++++.++++.|.+++.+++||+|+ +++++|+||++||+++..
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-----DGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-----TSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCEEEEEEEHHHHHhhhh
Confidence 5788999999999999999999999999999999998 899999999999998764
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >PF00654 Voltage_CLC: Voltage gated chloride channel Mutation in several of these channels lead to human disease | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=108.12 Aligned_cols=101 Identities=20% Similarity=0.264 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhc-
Q 007394 283 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTN- 361 (605)
Q Consensus 283 ~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg- 361 (605)
-.+.|++.+.+|+++|.+.|.+.|+..+|+++|..+++.++.........+..+|++|.+++.+++|++++++.+|...
T Consensus 40 ~~~~k~~~~~~s~~~G~s~G~EGp~v~iga~i~~~~~~~~~~~~~~~~r~l~~~g~aAglaa~F~aPlaG~lFalE~~~~ 119 (355)
T PF00654_consen 40 TLPVKFVGSILSLGSGLSVGREGPSVQIGAAIGSWLGRRFRLSRNETRRLLLAAGAAAGLAAAFNAPLAGVLFALEELSR 119 (355)
T ss_dssp HHHHHHHHHHHHHHTT-S-BSHHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHT-HHHHHHHHHCCTCH
T ss_pred HHHHHHHHHHHHHhcCCCCcCccHHHHHHHHHHHHHHHhhcccchHHHhHHHHHHHHHHHHHHhcCCcccceehhheeec
Confidence 3467999999999999999999999999999999999998532222245599999999999999999999999999863
Q ss_pred CC--cchHHHHHHHHHHHHHHhhc
Q 007394 362 NL--LLLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 362 ~~--~~l~p~~~a~~~a~~v~~~l 383 (605)
++ ..+.|.++++++++.+.+.+
T Consensus 120 ~~~~~~~~~~~~as~~a~~v~~~~ 143 (355)
T PF00654_consen 120 DFSVRLLLPALVASIVATLVSRLL 143 (355)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHHHH
Confidence 43 46999999999999999987
|
; InterPro: IPR001807 Chloride channels (CLCs) constitute an evolutionarily well-conserved family of voltage-gated channels that are structurally unrelated to the other known voltage-gated channels. They are found in organisms ranging from bacteria to yeasts and plants, and also to animals. Their functions in higher animals likely include the regulation of cell volume, control of electrical excitability and trans-epithelial transport []. The first member of the family (CLC-0) was expression-cloned from the electric organ of Torpedo marmorata [], and subsequently nine CLC-like proteins have been cloned from mammals. They are thought to function as multimers of two or more identical or homologous subunits, and they have varying tissue distributions and functional properties. To date, CLC-0, CLC-1, CLC-2, CLC-4 and CLC-5 have been demonstrated to form functional Cl- channels; whether the remaining isoforms do so is either contested or unproven. One possible explanation for the difficulty in expressing activatable Cl- channels is that some of the isoforms may function as Cl- channels of intracellular compartments, rather than of the plasma membrane. However, they are all thought to have a similar transmembrane (TM) topology, initial hydropathy analysis suggesting 13 hydrophobic stretches long enough to form putative TM domains []. Recently, the postulated TM topology has been revised, and it now seems likely that the CLCs have 10 (or possibly 12) TM domains, with both N- and C-termini residing in the cytoplasm []. A number of human disease-causing mutations have been identified in the genes encoding CLCs. Mutations in CLCN1, the gene encoding CLC-1, the major skeletal muscle Cl- channel, lead to both recessively and dominantly-inherited forms of muscle stiffness or myotonia []. Similarly, mutations in CLCN5, which encodes CLC-5, a renal Cl- channel, lead to several forms of inherited kidney stone disease []. These mutations have been demonstrated to reduce or abolish CLC function.; GO: 0005247 voltage-gated chloride channel activity, 0006821 chloride transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 2FEC_B 1KPK_F 2EZ0_A 1OTS_A 1OTT_B 2H2S_A 2FED_B 2HTL_A 2HTK_B 3NMO_A .... |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.5e-08 Score=101.03 Aligned_cols=111 Identities=19% Similarity=0.326 Sum_probs=95.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+++++.|+.++.++++....+++.++||.++. .-+.+|+|+|+.+|+-.. ++
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g--------~~~~KLvG~vtsrdi~f~-~~------------------- 168 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDG--------KRGSKLVGIITSRDIQFL-ED------------------- 168 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCC--------cccceeEEEEehhhhhhh-hc-------------------
Confidence 45778999999999999999999999999865 345799999999999432 11
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++++|++.+.+.+.+.+++++-+++++.+...+||||+ +|+++-+|+|
T Consensus 169 -----------------------~~~~~~~vmt~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-----~gelva~~~r 220 (503)
T KOG2550|consen 169 -----------------------NSLLVSDVMTKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-----KGELVAMLSR 220 (503)
T ss_pred -----------------------ccchhhhhcccccccccccccHHHHHHHHHhhhcCCcceecc-----CCceeeeeeh
Confidence 123578899999999999999999999999999999999999 8999999999
Q ss_pred HHhHHHH
Q 007394 582 QDLRAFN 588 (605)
Q Consensus 582 ~Dll~~~ 588 (605)
+||.+..
T Consensus 221 tDl~k~~ 227 (503)
T KOG2550|consen 221 TDLMKNR 227 (503)
T ss_pred hhhhhhc
Confidence 9999854
|
|
| >KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.6e-08 Score=100.61 Aligned_cols=127 Identities=16% Similarity=0.196 Sum_probs=98.9
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
++..+.+++++.++++.|.+.+.+++||||++ ++.+|.++..|+........+...... .
T Consensus 238 ~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~-----------g~~v~~~s~~Dv~~l~~~~~~~~~~~~----~----- 297 (381)
T KOG1764|consen 238 NIASISEDTPVIEALKIMSERRISALPVVDEN-----------GKKVGNYSRFDVIHLAREGTYNNLDLS----C----- 297 (381)
T ss_pred hheeecCCCcHHHHHHHHHhcCcCcceEEcCC-----------CceecceehhhhhhhhhcCccCccchh----H-----
Confidence 57889999999999999999999999999998 788999999999876555433221100 0
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
..+.. ..+..=....+++.++.++.++++.+..++.++++|||+ +|+++|+||.
T Consensus 298 -l~~~~--------------------~~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~-----~~~l~GvvSL 351 (381)
T KOG1764|consen 298 -LSEAL--------------------SHRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE-----DGVLVGVISL 351 (381)
T ss_pred -HHHHh--------------------hhcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcC-----CCcEEEEeeH
Confidence 11111 111111234689999999999999999999999999998 8999999999
Q ss_pred HHhHHHHhhhhCC
Q 007394 582 QDLRAFNILTAFP 594 (605)
Q Consensus 582 ~Dll~~~~~~~~~ 594 (605)
.|++.++..+...
T Consensus 352 sDil~~l~~~p~~ 364 (381)
T KOG1764|consen 352 SDILSYLVLTPSG 364 (381)
T ss_pred HHHHHHHHhCccC
Confidence 9999998865433
|
|
| >PF00571 CBS: CBS domain CBS domain web page | Back alignment and domain information |
|---|
Probab=98.69 E-value=4.2e-08 Score=74.17 Aligned_cols=56 Identities=32% Similarity=0.588 Sum_probs=52.3
Q ss_pred cccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHh
Q 007394 413 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 481 (605)
Q Consensus 413 v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~ 481 (605)
|+++|++ ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+++++.
T Consensus 1 v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~-----------~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 1 VGDIMTP--PPITVSPDDSLEEALEIMRKNGISRLPVVDED-----------GKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHHSBS--SSEEEETTSBHHHHHHHHHHHTSSEEEEESTT-----------SBEEEEEEHHHHHHHHH
T ss_pred CeECCcC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------CEEEEEEEHHHHHhhhh
Confidence 5789999 99999999999999999999999999999988 99999999999988653
|
Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A .... |
| >COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.8e-08 Score=95.77 Aligned_cols=61 Identities=21% Similarity=0.228 Sum_probs=56.2
Q ss_pred hhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 525 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 525 ~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
..+++.+||++++.++++++++++|.+++.+++++.+||+|+ +.|++||||++|+.+....
T Consensus 243 ~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~-----~~rl~GiVt~~dl~~~a~~ 303 (382)
T COG3448 243 GELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDE-----HRRLVGIVTQRDLLKHARP 303 (382)
T ss_pred ccccHHHhcCccceecCCcCChHHHHHHHHHcCccccccccc-----ccceeeeeeHHHHhhccCc
Confidence 347899999999999999999999999999999999999999 8999999999999985443
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=98.57 E-value=5.4e-07 Score=94.74 Aligned_cols=108 Identities=21% Similarity=0.225 Sum_probs=89.5
Q ss_pred eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcc
Q 007394 423 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFS 502 (605)
Q Consensus 423 v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~ 502 (605)
.....++.+..++.+.|.+.+.+...|+|++ +++.|.++.+++...+...
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~------------------- 301 (363)
T TIGR01186 252 PITKTADKGPRSALQLMRDERVDSLYVVDRQ-----------NKLVGVVDVESIKQARKKA------------------- 301 (363)
T ss_pred ceeecCCCCHHHHHHHHHhcCCceEEEEcCC-----------CCEEEEEeHHHHHHHhhcC-------------------
Confidence 3445667788999999998888889999988 8999999999886543321
Q ss_pred hhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHH
Q 007394 503 WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582 (605)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~ 582 (605)
-.+.+.|.+...++++++++.+++..|.+++.. +||+|+ +|+++|+||+.
T Consensus 302 ------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-----~~~~~g~i~~~ 351 (363)
T TIGR01186 302 ------------------------QGLQDVLIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-----DQRLVGIVTRG 351 (363)
T ss_pred ------------------------CchhhhhccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-----CCcEEEEEEHH
Confidence 123445567778899999999999999999998 999998 89999999999
Q ss_pred HhHHHHhh
Q 007394 583 DLRAFNIL 590 (605)
Q Consensus 583 Dll~~~~~ 590 (605)
++++.+.+
T Consensus 352 ~~~~~~~~ 359 (363)
T TIGR01186 352 SLVDALYD 359 (363)
T ss_pred HHHHHHHh
Confidence 99998865
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.2e-07 Score=94.48 Aligned_cols=120 Identities=16% Similarity=0.151 Sum_probs=93.8
Q ss_pred cccccccccCCC-eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 411 LTVGELIDAKPP-VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 411 ~~v~diM~~~~~-v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
+++.++|.+... .+...++.+..++++.|.+.+.+.++|+|++ +++.|+++.+++.+.....
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~------ 336 (400)
T PRK10070 274 FSAKDIARRTPNGLIRKTPGFGPRSALKLLQDEDREYGYVIERG-----------NKFVGAVSIDSLKTALTQQ------ 336 (400)
T ss_pred cchhhhhhcCcccccccCCCCCHHHHHHHHHhcCCceEEEEcCC-----------CcEEEEEeHHHHHhhhhcC------
Confidence 466777754111 1233466788999999999999999999998 8999999999996532210
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
.++.+.+.+...++.+++++.+++..+.+.... +||||+
T Consensus 337 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--- 375 (400)
T PRK10070 337 -------------------------------------QGLDAALIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDE--- 375 (400)
T ss_pred -------------------------------------CchhhhhccCCceeCCCCCHHHHHHHHHhCCCc-EEEECC---
Confidence 123444556778999999999999999997776 999998
Q ss_pred CCCCceEEEEeHHHhHHHHhh
Q 007394 570 AGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||+.++++.+..
T Consensus 376 --~~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 376 --DQQYVGIISKGMLLRALDR 394 (400)
T ss_pred --CCcEEEEEEHHHHHHHHHh
Confidence 8999999999999998864
|
|
| >KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.1e-06 Score=91.76 Aligned_cols=98 Identities=22% Similarity=0.145 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcc------------cCCCcHHHHHHHHHhhhhhhcchhHH
Q 007394 284 FILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSY------------TNIDQGLYAVLGAASLMAGSMRMTVS 351 (605)
Q Consensus 284 ~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~------------~~~~~~~~a~~G~aa~~a~~~~~pls 351 (605)
++.|++-...+.+.|...|..+|.+..||+++..+++.=... ..-+..-++.||+||..++++|+|+.
T Consensus 189 L~~Ki~Gvi~sV~gGL~~GKEGPMIHsGa~Vaagl~QG~S~~~r~~~r~fr~FrnDrdrRD~VscGaAAGVaAAF~APvG 268 (762)
T KOG0474|consen 189 LIVKILGVIFSVAGGLAVGKEGPMIHSGSVVAAGLGQGGSTSLRKDWRWFRYFRNDRDRRDLVSCGAAAGVAAAFRAPVG 268 (762)
T ss_pred hHHhHhhhhhhhhhhhhccCcCCeeehhHHHHhcccCCCccchhhhhhhhhhhcccchhhhhhhcchHHhHHHHhCCCcc
Confidence 457999999999999999999999999999999998753220 12345678999999999999999999
Q ss_pred HHHHHHHHhcCC---cchHHHHHHHHHHHHHHh
Q 007394 352 LCVIFLELTNNL---LLLPITMIVLLIAKTVGD 381 (605)
Q Consensus 352 ~~vi~~E~tg~~---~~l~p~~~a~~~a~~v~~ 381 (605)
++++.+|=.-++ .++-=+..++.++..+-+
T Consensus 269 GvLFaLEE~aS~Wnq~L~WR~fFss~i~~f~l~ 301 (762)
T KOG0474|consen 269 GVLFALEEGASWWNQALLWRTFFSSAIVAFVLR 301 (762)
T ss_pred ceEEEechhhHHHHhhHHHHHHHHhHHHHHhHH
Confidence 999999965443 344455555555555554
|
|
| >PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.1e-07 Score=100.98 Aligned_cols=144 Identities=19% Similarity=0.294 Sum_probs=100.1
Q ss_pred cccccccccc-cCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 409 RTLTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 409 ~~~~v~diM~-~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
...+|+++|+ + +++++++++++.++.+.|.+++++.+||+|++ ++++|+++++|+.+...++....
T Consensus 244 ~~~~V~~iM~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~PVvd~~-----------g~lvGiit~~dl~~~~~~~~iLV 310 (546)
T PRK14869 244 QSIPVSYIMTTE--DLVTFSKDDYLEDVKEVMLKSRYRSYPVVDED-----------GKVVGVISRYHLLSPVRKKVILV 310 (546)
T ss_pred cCCCHHHhccCC--CcEEECCCCcHHHHHHHHHhcCCCceEEEcCC-----------CCEEEEEEHHHhhccccCceEEE
Confidence 3578999999 7 89999999999999999999999999999988 89999999999987543321110
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCcee---cCCCCHHHHHHHHHHcCCcEEEEc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTV---IESMSVAKAMVLFRQVGLRHLLVV 564 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v---~~~~sl~~a~~~~~~~~~~~lpVV 564 (605)
+.. +.... .... ++.+.. .-.| +-++.++|++.|..+ +...+...+.++|.+.++...|++
T Consensus 311 D~~-----e~~q~--~~~~-------~~~~i~-~iiD-HH~~~~~~~~~pi~~~~~~~gst~tiv~~~~~~~~i~~~~~i 374 (546)
T PRK14869 311 DHN-----EKSQA--VEGI-------EEAEIL-EIID-HHRLGDIQTSNPIFFRNEPVGSTSTIVARMYRENGIEPSPEI 374 (546)
T ss_pred cCc-----ccccc--ccch-------hhceEE-EEec-CCccCCCCCCCCcEEEeeeeeeHHHHHHHHHHHcCCCCCHHH
Confidence 000 00000 0000 000000 0001 123556777777655 446778899999999999988888
Q ss_pred cccccCCCCceEEEEeHHHhHHH
Q 007394 565 PKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 565 d~~~~~~~g~lvGiITr~Dll~~ 587 (605)
.. ..+.||+|.++.++.
T Consensus 375 a~------~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 375 AG------LLLAAILSDTLLFKS 391 (546)
T ss_pred HH------HHHHHHHHHhcCccC
Confidence 75 579999999888864
|
|
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=98.08 E-value=5.2e-06 Score=72.34 Aligned_cols=55 Identities=25% Similarity=0.314 Sum_probs=50.9
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
.+++++|.+++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+.+
T Consensus 58 ~~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-----~~~l~Givt~~dl~~ 112 (113)
T cd04597 58 PRVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-----DGTPAGIITLLDLAE 112 (113)
T ss_pred hhHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHhhc
Confidence 4588999999999999999999999999999999999998 789999999999864
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.7e-06 Score=74.24 Aligned_cols=61 Identities=21% Similarity=0.301 Sum_probs=56.3
Q ss_pred hhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 525 MYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 525 ~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
..+.++.+|+++.+.+.|++++.++.++|+++++.++||+++ ++++|-||..|+.+...+.
T Consensus 63 ~~ita~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~------~k~VGsItE~~iv~~~le~ 123 (187)
T COG3620 63 TRITAKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE------DKVVGSITENDIVRALLEG 123 (187)
T ss_pred ceEeHhhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC------CeeeeeecHHHHHHHHhcc
Confidence 346789999999999999999999999999999999999997 8999999999999988654
|
|
| >TIGR00400 mgtE Mg2+ transporter (mgtE) | Back alignment and domain information |
|---|
Probab=98.01 E-value=5.3e-06 Score=90.23 Aligned_cols=113 Identities=11% Similarity=0.216 Sum_probs=88.7
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+++++|++ ++.++++++++.++.+.|+++++..+||||++ ++++|+|+.+|+++.+.+..
T Consensus 195 ~~v~~im~~--~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~~-----------g~lvGiIt~~Dil~~l~~~~------ 255 (449)
T TIGR00400 195 EILSSIMRS--SVFSIVGVNDQEEVARLIQKYDFLAVPVVDNE-----------GRLVGIVTVDDIIDVIQSEA------ 255 (449)
T ss_pred CcHHHHhCC--CCeeECCCCCHHHHHHHHHHcCCCEEeEEcCC-----------CeEEEEEEHHHHHHHHHhhh------
Confidence 468999998 88999999999999999999999999999988 89999999999987665421
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
.+++|+....+..+++++.++...+.+++...++|.
T Consensus 256 --------------------------------------~ed~~~~~gv~~~~~~~l~~~~~~~~~~R~~wL~v~------ 291 (449)
T TIGR00400 256 --------------------------------------TEDFYMIAAVKPLDDSYFDTSILVMAKNRIIWLLVL------ 291 (449)
T ss_pred --------------------------------------HHHHHHhcCCCCCcchhhhchHHHHHHhccchHHHH------
Confidence 112333334444457788999999999999888875
Q ss_pred CCCceEEEEeHHHhHHHHhh
Q 007394 571 GVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~ 590 (605)
.+.|++| ..+++.+.+
T Consensus 292 ---~~~~~~t-~~ii~~f~~ 307 (449)
T TIGR00400 292 ---LVSSTFT-ATIISNYED 307 (449)
T ss_pred ---HHHHHHH-HHHHHHHHH
Confidence 2778888 777766543
|
This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer. |
| >KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00032 Score=76.92 Aligned_cols=66 Identities=14% Similarity=0.134 Sum_probs=57.1
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
+.+.++|.++...+..++|..|..+.+....++.+|+||+ .+..-++|.|.|+.|...+..+.-++
T Consensus 588 v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s---~esmiLlGSV~R~~L~~ll~~~ig~~ 653 (931)
T KOG0476|consen 588 VKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES---KESMILLGSVARRYLTALLQRHIGPE 653 (931)
T ss_pred EEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccC---cccceeeehhHHHHHHHHHHhhcCcc
Confidence 5689999999999999999999999988888999999987 44556999999999998887755444
|
|
| >COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.7e-06 Score=78.33 Aligned_cols=58 Identities=26% Similarity=0.278 Sum_probs=54.5
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.++.++|+++++++.+++|++|+.+.|.+++++..||+|+ ++++|++|.+|+.++..+
T Consensus 172 ~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~------dk~vGiit~~dI~~aia~ 229 (294)
T COG2524 172 EKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDD------DKIVGIITLSDIAKAIAN 229 (294)
T ss_pred chhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecC------CceEEEEEHHHHHHHHHc
Confidence 4689999999999999999999999999999999999997 599999999999998775
|
|
| >cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.8e-05 Score=66.37 Aligned_cols=55 Identities=27% Similarity=0.338 Sum_probs=50.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|++|++|+++
T Consensus 56 ~~v~~~~~~--~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~-----------~~~~Giit~~di~~ 110 (111)
T cd04603 56 LKVCEVYIV--PVPIVYCDSKVTDLLRIFRETEPPVVAVVDKE-----------GKLVGTIYERELLR 110 (111)
T ss_pred cChhheeec--CCcEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CeEEEEEEhHHhhc
Confidence 458899987 88899999999999999999999999999987 89999999999864
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=97.77 E-value=4.2e-05 Score=66.60 Aligned_cols=54 Identities=17% Similarity=0.313 Sum_probs=50.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.+++|+|.+ ++.++++++++.++++.|.+.++..+||+|++ ++++|+++.+|+.
T Consensus 58 ~~v~dim~~--~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~-----------~~l~Givt~~dl~ 111 (113)
T cd04597 58 PRVRDVINR--KPVTARPNDPLREALNLMHEHNIRTLPVVDDD-----------GTPAGIITLLDLA 111 (113)
T ss_pred hhHHHhcCC--CCCEECCcCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHhh
Confidence 679999998 88899999999999999999999999999987 8999999999984
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.66 E-value=6.5e-05 Score=65.18 Aligned_cols=56 Identities=16% Similarity=0.278 Sum_probs=50.8
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++++|+++
T Consensus 58 ~~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~~Gvi~~~dl~~ 113 (114)
T cd04619 58 TAPVENVMTR--AVVSCRPGDLLHDVWQVMKQRGLKNIPVVDEN-----------ARPLGVLNARDALK 113 (114)
T ss_pred cCCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeEEEECCC-----------CcEEEEEEhHhhcc
Confidence 3568899988 88999999999999999999999999999987 89999999999853
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.64 E-value=8.5e-05 Score=62.84 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=42.5
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHH
Q 007394 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFN 588 (605)
Q Consensus 537 ~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~ 588 (605)
+.++++++++.++.+.|.+.+.+.+||+|+ + |+++|+||.+|+.+..
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-----~~~~~~Givt~~Dl~~~~ 50 (98)
T cd04618 3 LVVFDTKLPVKKAFNALVENGIRSAPLWDS-----RKQQFVGMLTITDFILIL 50 (98)
T ss_pred EEEECCCCcHHHHHHHHHHcCCceEEEEeC-----CCCEEEEEEEHHHHhhhe
Confidence 468999999999999999999999999986 4 7899999999998754
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00013 Score=63.88 Aligned_cols=49 Identities=14% Similarity=0.157 Sum_probs=44.4
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+..++++++++.++.+.|.+++.+.+||+|+ +|+++|++|++|+++...
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~-----~~~~~Giv~~~dl~~~~~ 50 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDE-----NGKVVDVYSRFDVINLAK 50 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECC-----CCeEEEEEeHHHHHHHHh
Confidence 4568899999999999999999999999998 799999999999997653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=79.43 Aligned_cols=118 Identities=16% Similarity=0.194 Sum_probs=81.7
Q ss_pred cccccccc-cCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 411 LTVGELID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 411 ~~v~diM~-~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
.+++++|. + +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.+.......
T Consensus 147 ~~V~dim~~~--~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~-----------g~lvGiIT~~DLl~~~~~p~a~~-- 211 (486)
T PRK05567 147 QPVSEVMTKE--RLVTVPEGTTLEEALELLHEHRIEKLPVVDDN-----------GRLKGLITVKDIEKAEEFPNACK-- 211 (486)
T ss_pred CcHHHHcCCC--CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEEhHHhhhhhhCCCccc--
Confidence 46889998 5 78999999999999999999999999999998 89999999999976542211000
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
+.+..+.+...|..++ .+ .+..+.|.+.+.+.+ |+|.
T Consensus 212 --------------------------------d~~g~l~V~aai~~~~------~~-~e~a~~L~~agvdvi-vvD~--- 248 (486)
T PRK05567 212 --------------------------------DEQGRLRVGAAVGVGA------DN-EERAEALVEAGVDVL-VVDT--- 248 (486)
T ss_pred --------------------------------ccCCCEEEEeecccCc------ch-HHHHHHHHHhCCCEE-EEEC---
Confidence 0001123444444332 12 667777888899855 6664
Q ss_pred CCCCceEEEEeHHHhHHH
Q 007394 570 AGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~ 587 (605)
.+++..++++.-+.++.
T Consensus 249 -a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 249 -AHGHSEGVLDRVREIKA 265 (486)
T ss_pred -CCCcchhHHHHHHHHHh
Confidence 14667777765555543
|
|
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00017 Score=51.11 Aligned_cols=47 Identities=34% Similarity=0.468 Sum_probs=42.1
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 537 ~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
+.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-----EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-----CCeEEEEEEHHHHHHhh
Confidence 457889999999999999999999999998 78999999999997653
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00022 Score=64.14 Aligned_cols=50 Identities=24% Similarity=0.238 Sum_probs=45.4
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+|+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~-----~g~l~Givt~~Dl~~~~~~ 51 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDS-----DDFLEGILTLGDIQRFLFT 51 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECC-----CCeEEEEEEHHHHHHHHhh
Confidence 4568999999999999999999999999998 7999999999999987654
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually |
| >cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00027 Score=59.39 Aligned_cols=47 Identities=26% Similarity=0.290 Sum_probs=43.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
++.++.+++++.++.+.|.+.+.+.+||+|+ +|+++|++|.+|+.+.
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~ 48 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDD-----DGKLSGIITERDLIAK 48 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHhcC
Confidence 4678899999999999999999999999998 7999999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >PRK10892 D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00017 Score=75.23 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=52.8
Q ss_pred hhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 525 MYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 525 ~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
..++++++|++ ++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+||.+|+.+...
T Consensus 200 ~~~~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~-----~g~lvGivt~~Dl~~~~~ 261 (326)
T PRK10892 200 LLLRVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDD-----NMKIEGIFTDGDLRRVFD 261 (326)
T ss_pred ccCcHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcC-----CCcEEEEEecHHHHHHHh
Confidence 34678999997 8899999999999999999999888888887 799999999999987543
|
|
| >cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00018 Score=63.05 Aligned_cols=57 Identities=28% Similarity=0.579 Sum_probs=51.3
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
...+++++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++++|+++
T Consensus 67 ~~~~i~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSP--PVVTVRPDTPIAELVPLLADGGHHHVPVVDED-----------RRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccC--CCeeeCCCCcHHHHHHHHHhcCCCceeEEcCC-----------CCEEEEEEhHHhhc
Confidence 34578899988 89999999999999999999999999999977 89999999999854
|
These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00046 Score=61.02 Aligned_cols=51 Identities=24% Similarity=0.406 Sum_probs=45.9
Q ss_pred cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 535 ~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+++...+
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~Gii~~~dl~~~~~~ 52 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVDE-----SGKILGMVTLGNLLSSLSS 52 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHHH
Confidence 45678999999999999999999999999998 7899999999999976554
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten |
| >cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00024 Score=61.27 Aligned_cols=54 Identities=24% Similarity=0.333 Sum_probs=49.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++++|++
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~di~ 111 (113)
T cd04607 58 DPVSEVMNR--NPITAKVGSSREEILALMRERSIRHLPILDEE-----------GRVVGLATLDDLL 111 (113)
T ss_pred CCHHHhhcC--CCEEEcCCCCHHHHHHHHHHCCCCEEEEECCC-----------CCEEEEEEhHHhc
Confidence 467889987 88899999999999999999999999999987 8999999999984
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00021 Score=74.37 Aligned_cols=59 Identities=27% Similarity=0.327 Sum_probs=53.7
Q ss_pred hcccccccccC--CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 526 YIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 526 ~~~v~~im~~~--~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
..+++++|+++ +.++++++++.++.+.|.+.+...+||+|+ +|+++|+||.+|+.+...
T Consensus 196 ~~~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~-----~g~~iG~vt~~dl~~~~~ 256 (321)
T PRK11543 196 LNKVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDA-----QQQVQGVFTDGDLRRWLV 256 (321)
T ss_pred HhHHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEecHHHHHHHHh
Confidence 36799999998 999999999999999999999999999998 899999999999987553
|
|
| >cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00027 Score=61.15 Aligned_cols=56 Identities=27% Similarity=0.512 Sum_probs=49.2
Q ss_pred ccccccccccCCCeeEEcCc--ccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGI--EKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~--~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.++.++|.+ ++.+++++ +++.++++.|.+++...+||+|++ ++++|+++++|+++
T Consensus 57 ~~~i~~~~~~--~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~-----------~~~~Gvit~~dl~~ 114 (115)
T cd04620 57 DLPIGEVMTQ--PVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQ-----------GQLIGLVTAESIRQ 114 (115)
T ss_pred ccCHHHhcCC--CcEEEecccccCHHHHHHHHHHhCCceEEEEcCC-----------CCEEEEEEhHHhhc
Confidence 3568889987 78888877 689999999999999999999987 89999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0003 Score=60.26 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=50.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
+.+++++|.+ ++..+.+++++.++++.|.+++...+||+|++ ++++|+++..|+++.
T Consensus 52 ~~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dll~~ 108 (109)
T cd04606 52 DTPVSDIMDT--DVISVSADDDQEEVARLFEKYDLLALPVVDEE-----------GRLVGIITVDDVIDV 108 (109)
T ss_pred cchHHHHhCC--CCeEEcCCCCHHHHHHHHHHcCCceeeeECCC-----------CcEEEEEEhHHhhhh
Confidence 3568889987 88999999999999999999998899999987 899999999999753
|
MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00035 Score=60.81 Aligned_cols=57 Identities=23% Similarity=0.416 Sum_probs=51.4
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvvt~~di~~ 121 (122)
T cd04585 65 SKIKVSDIMTR--DPITVSPDASVEEAAELMLERKISGLPVVDDQ-----------GRLVGIITESDLFR 121 (122)
T ss_pred cccCHHHhccC--CCeEeCCCCcHHHHHHHHHHcCCCceeEECCC-----------CcEEEEEEHHHhhh
Confidence 34678899988 88999999999999999999999999999987 89999999999864
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i |
| >cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00035 Score=59.76 Aligned_cols=56 Identities=20% Similarity=0.334 Sum_probs=50.3
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.+++++|.+ ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+
T Consensus 52 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~di~~ 107 (108)
T cd04596 52 DTTIEKVMTK--NPITVNPKTSVASVAHMMIWEGIEMLPVVDDN-----------KKLLGIISRQDVLK 107 (108)
T ss_pred cccHHHHhcC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CCEEEEEEHHHhhc
Confidence 3468899988 88999999999999999999999999999987 89999999999853
|
The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0006 Score=58.34 Aligned_cols=50 Identities=28% Similarity=0.316 Sum_probs=44.9
Q ss_pred cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 535 ~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|++|.+|+++...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~~l~~~~~ 51 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDE-----DGRLVGIVTSWDISKAVA 51 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECC-----CCcEEEEEeHHHHHHHHh
Confidence 56678999999999999999999999999998 799999999999987543
|
Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00039 Score=61.09 Aligned_cols=52 Identities=17% Similarity=0.214 Sum_probs=46.7
Q ss_pred cccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 413 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 413 v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
+.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.
T Consensus 70 ~~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------~~~vGiit~~di~ 121 (123)
T cd04627 70 DLTIGTS--DVISINGDQPLIDALHLMHNEGISSVAVVDNQ-----------GNLIGNISVTDVR 121 (123)
T ss_pred hcccCcC--CceEeCCCCCHHHHHHHHHHcCCceEEEECCC-----------CcEEEEEeHHHhh
Confidence 3457777 88999999999999999999999999999987 8999999999984
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00043 Score=59.59 Aligned_cols=56 Identities=21% Similarity=0.484 Sum_probs=50.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.+.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++..|+.
T Consensus 56 ~~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvvt~~dl~ 111 (113)
T cd04615 56 KDAKVREVMNS--PVITIDANDSIAKARWLMSNNNISRLPVLDDK-----------GKVGGIVTEDDIL 111 (113)
T ss_pred cCCcHHHhccC--CceEECCCCcHHHHHHHHHHcCCCeeeEECCC-----------CeEEEEEEHHHhh
Confidence 34578899988 88999999999999999999888899999987 8999999999984
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0017 Score=68.69 Aligned_cols=131 Identities=18% Similarity=0.197 Sum_probs=96.3
Q ss_pred CeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhc
Q 007394 422 PVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKF 501 (605)
Q Consensus 422 ~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~ 501 (605)
+.+.+.+..++-++...+.+++++.+||.|.+ .+.++.+++.+-+++.+.......
T Consensus 163 ~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~----------~~~v~~ilt~~rIl~~l~~~~~~~-------------- 218 (381)
T KOG1764|consen 163 PFVSISPESSLLDAVLLLIKSRIHRVPVIDPE----------TGEVLYILTQRRILKFLWLNGRLL-------------- 218 (381)
T ss_pred CceeecCcHHHHHHHHHHHhCCccceeeeccc----------ccceeeehhHHHHHHHHHHhhccc--------------
Confidence 44888999999999999999999999999943 279999999999988776532111
Q ss_pred chhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeH
Q 007394 502 SWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581 (605)
Q Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr 581 (605)
....++.. ++.+.. --+..+...+.+++++.+|+++|.+.++..+||||+ .|+.+|++++
T Consensus 219 ~~~~~l~~--s~~dl~-------------ig~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~~-----~g~~v~~~s~ 278 (381)
T KOG1764|consen 219 PLPSLLSK--SLSDLG-------------IGTWSNIASISEDTPVIEALKIMSERRISALPVVDE-----NGKKVGNYSR 278 (381)
T ss_pred ccHHHhhC--CHHHhC-------------cchhhhheeecCCCcHHHHHHHHHhcCcCcceEEcC-----CCceecceeh
Confidence 11111110 011110 011235678899999999999999999999999999 7888999999
Q ss_pred HHhHHHHhhhhCCCc
Q 007394 582 QDLRAFNILTAFPHL 596 (605)
Q Consensus 582 ~Dll~~~~~~~~~~~ 596 (605)
.|+.....+.-+..+
T Consensus 279 ~Dv~~l~~~~~~~~~ 293 (381)
T KOG1764|consen 279 FDVIHLAREGTYNNL 293 (381)
T ss_pred hhhhhhhhcCccCcc
Confidence 999987765444433
|
|
| >cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00045 Score=59.34 Aligned_cols=54 Identities=20% Similarity=0.269 Sum_probs=48.6
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.++.++|.+ ++.++++++++.++++.|.+++...+||+|+ ++++|+++.+|+++
T Consensus 58 ~~v~~~~~~--~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~~------------~~~~Gvvt~~dl~~ 111 (112)
T cd04625 58 TTVRAIMNP--EPIVASPDDSIDEVRRLMVERHLRYLPVLDG------------GTLLGVISFHDVAK 111 (112)
T ss_pred CCHHHHhCC--CCeEECCCCCHHHHHHHHHHcCCCeeeEEEC------------CEEEEEEEHHHhhc
Confidence 468899987 7889999999999999999999899999985 79999999999854
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00044 Score=75.72 Aligned_cols=59 Identities=15% Similarity=0.256 Sum_probs=53.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
+.+++++|++.++++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++.
T Consensus 160 ~~~V~dIMt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~-----------g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 160 DTKVKDFMTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKN-----------GNLVYLVFRKDYDSH 218 (502)
T ss_pred CCCHHHHhCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEhHHHHhc
Confidence 46799999865578899999999999999999999999999987 899999999999774
|
|
| >cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00092 Score=57.37 Aligned_cols=50 Identities=22% Similarity=0.218 Sum_probs=44.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+++...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~G~v~~~~l~~~~~~ 51 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDP-----DERPIGIVTERDIVRAVAA 51 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECC-----CCCEEEEeeHHHHHHHHhc
Confidence 4568899999999999999999999999998 7999999999999876543
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00042 Score=59.94 Aligned_cols=55 Identities=24% Similarity=0.393 Sum_probs=49.4
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.+++++|.+ ++.++++++++.++++.|.+.+...+||+|+ ++++|+++++|+++
T Consensus 59 ~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~Gvi~~~dl~~ 113 (114)
T cd04630 59 RVNVYEIMTK--PLISVSPDMDIKYCARLMERTNIRRAPVVEN------------NELIGIISLTDIFL 113 (114)
T ss_pred ccCHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCEeeEeeC------------CEEEEEEEHHHhhc
Confidence 3578899987 8999999999999999999999999999986 68999999999854
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00077 Score=57.21 Aligned_cols=48 Identities=27% Similarity=0.341 Sum_probs=43.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|++|.+|+.+..
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~-----~g~~~Giv~~~dl~~~~ 49 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDA-----DGQPLGFVTRREAARAS 49 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECC-----CCCEEEEEeHHHHHHhc
Confidence 4668999999999999999999999999997 79999999999998753
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi |
| >cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00053 Score=58.96 Aligned_cols=55 Identities=15% Similarity=0.289 Sum_probs=49.7
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.++.++|.+ ++.++++++++.++++.|.+++...+||+|++ ++++|+++..|+++
T Consensus 59 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~iG~it~~di~~ 113 (114)
T cd04604 59 LPVADVMTR--NPKTIDPDALAAEALELMEENKITALPVVDDN-----------GRPVGVLHIHDLLR 113 (114)
T ss_pred CCHHHhhcc--CCeEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CCEEEEEEHHHhhc
Confidence 468899988 88899999999999999999888999999976 89999999999853
|
These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct |
| >cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00048 Score=60.19 Aligned_cols=57 Identities=21% Similarity=0.430 Sum_probs=51.2
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+++..|++.
T Consensus 65 ~~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvit~~dl~~ 121 (122)
T cd04803 65 RDVPVAEVMKT--DVLTVTPDTPLREAAEIMVENKIGCLPVVDDK-----------GTLVGIITRSDFLR 121 (122)
T ss_pred cCcCHHHhhCC--CCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CCEEEEEEHHHhhc
Confidence 45678899988 88999999999999999999888899999987 79999999999853
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.00054 Score=58.26 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=49.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++
T Consensus 52 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------g~~~Gvi~~~di~~ 106 (107)
T cd04610 52 ETVEEIMSK--DLVVAVPEMDIMDAARVMFRTGISKLPVVDEN-----------NNLVGIITNTDVIR 106 (107)
T ss_pred ccHHHhCCC--CCeEECCCCCHHHHHHHHHHhCCCeEeEECCC-----------CeEEEEEEHHHhhc
Confidence 458889987 78899999999999999999888899999987 89999999999853
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >TIGR01137 cysta_beta cystathionine beta-synthase | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0005 Score=75.28 Aligned_cols=59 Identities=25% Similarity=0.358 Sum_probs=54.1
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
..+++++|++++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|+||.+|+.+...
T Consensus 334 ~~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 392 (454)
T TIGR01137 334 NATVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTE-----AGKVLGSVTLRELLSALF 392 (454)
T ss_pred cCCHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHh
Confidence 46789999999999999999999999999999999999998 789999999999998654
|
Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven. |
| >cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0005 Score=59.11 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=49.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|++
T Consensus 58 ~~v~~i~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~-----------~~~~Gvvs~~dl~ 111 (113)
T cd04587 58 TLVERVMTP--NPVCATSDTPVLEALHLMVQGKFRHLPVVDKS-----------GQVVGLLDVTKLT 111 (113)
T ss_pred CCHHHhcCC--CCeEEcCCCCHHHHHHHHHHcCCCcccEECCC-----------CCEEEEEEHHHhc
Confidence 568899987 88899999999999999999998899999987 8999999999985
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai |
| >cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.00093 Score=58.22 Aligned_cols=49 Identities=33% Similarity=0.420 Sum_probs=44.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++.++++++++.++.+.|.+++.+.+||+|+ +++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~-----~~~~~Givt~~dl~~~~~ 50 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDE-----DGDLVGVVSRKDLLKASI 50 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCEEEEEEHHHHHHHHH
Confidence 4568999999999999999999999999998 789999999999998764
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >TIGR00393 kpsF KpsF/GutQ family protein | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00047 Score=69.81 Aligned_cols=58 Identities=22% Similarity=0.288 Sum_probs=53.3
Q ss_pred hcccccccccC-CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 526 YIDLHPLTNTT-PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 526 ~~~v~~im~~~-~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
..+++++|+++ +.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+||.+|+.+..
T Consensus 154 ~~~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~-----~g~~~Givt~~dl~~~~ 212 (268)
T TIGR00393 154 LVKVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDE-----NNQLVGVFTDGDLRRAL 212 (268)
T ss_pred hhhHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeC-----CCCEEEEEEcHHHHHHH
Confidence 46789999988 899999999999999999999999999998 79999999999998754
|
This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli. |
| >TIGR03520 GldE gliding motility-associated protein GldE | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00079 Score=72.30 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=51.9
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.+++|+|++ ++.+++.+++++++.+.+.+++++++||.++ ..++++|+|+.+|++....
T Consensus 191 ~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~----~~d~ivGiv~~kDll~~~~ 251 (408)
T TIGR03520 191 TDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE----TIDNITGVLYIKDLLPHLN 251 (408)
T ss_pred CEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC----CCCceEEEEEHHHHHhHhc
Confidence 468999997 6789999999999999999999999999976 1368999999999997543
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype. |
| >smart00116 CBS Domain in cystathionine beta-synthase and other proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.001 Score=47.01 Aligned_cols=46 Identities=28% Similarity=0.491 Sum_probs=41.1
Q ss_pred eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 423 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 423 v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
+.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+.+.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-----------~~~~g~i~~~~l~~~ 47 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEE-----------GRLVGIVTRRDIIKA 47 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCC-----------CeEEEEEEHHHHHHh
Confidence 4678899999999999999999999999987 799999999999664
|
Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. |
| >cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.001 Score=56.96 Aligned_cols=50 Identities=26% Similarity=0.304 Sum_probs=44.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++.+++++.++.+.|.+.+.+.+||+|+ +++++|++|.+|+++....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~Giv~~~~l~~~~~~ 51 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDD-----GGRLVGIFSERDIVRKVAL 51 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEehHHHHHHHhh
Confidence 3467899999999999999999999999998 7899999999999986543
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00091 Score=57.41 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=44.0
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+|+++|+.+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~G~v~~~~l~~~~~ 50 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDD-----DGRLVGIVSLDDIREILF 50 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECC-----CCCEEEEEEHHHHHHHHh
Confidence 4568899999999999999999999999998 789999999999987543
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0018 Score=70.51 Aligned_cols=59 Identities=17% Similarity=0.289 Sum_probs=53.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
.+++++|++ +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+++|+++....
T Consensus 146 ~~V~dIMt~--~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~-----------g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 146 TQVRDIMST--DLVTAPADTEPRKAFDLLEHAPRDVAPLVDAD-----------GTLAGILTRTGALRATIY 204 (475)
T ss_pred CCHHHHccC--CceEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHhC
Confidence 468999998 99999999999999999999999999999987 899999999999876544
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00069 Score=58.57 Aligned_cols=55 Identities=16% Similarity=0.345 Sum_probs=47.4
Q ss_pred cccccccccCCCeeEEcC--cccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSG--IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~--~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++++|.+ +...+.. ++++.++++.|.+++...+||+|++ ++++|+|+++|+.+
T Consensus 57 ~~v~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~-----------~~~~Gvit~~di~~ 113 (114)
T cd04602 57 TPLSEVMTP--REVLVVAPTGITLEEANEILRESKKGKLPIVNDD-----------GELVALVTRSDLKK 113 (114)
T ss_pred CCHHHhcCC--CceEEECCCCCCHHHHHHHHHhcCCCceeEECCC-----------CeEEEEEEHHHhhc
Confidence 357889987 6666655 9999999999999999999999987 89999999999853
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos |
| >cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00073 Score=60.73 Aligned_cols=56 Identities=20% Similarity=0.427 Sum_probs=50.2
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+.+++++|.+ ++..+.+++++.++.+.|.+++++.+||+|+ ++++|+|+++|+.+
T Consensus 79 ~~~~v~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~------------~~~~Gvit~~di~~ 134 (135)
T cd04621 79 VPLVAEDIMTE--EIITVSPNDDVVDAAKLMLEANISGLPVVDN------------DNIVGVITKTDICR 134 (135)
T ss_pred ccccHHHhcCC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEeC------------CEEEEEEEHHHHhh
Confidence 35679999988 8889999999999999999999999999986 68999999999854
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00059 Score=58.48 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=49.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++.+|+.+
T Consensus 56 ~~v~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~-----------~~~~G~it~~dl~~ 110 (111)
T cd04639 56 APVRGVMRR--DFPTVSPSATLDAVLRLMQQGGAPAVPVVDGS-----------GRLVGLVTLENVGE 110 (111)
T ss_pred CcHHHHhcC--CCcEECCCCcHHHHHHHHHhcCCceeeEEcCC-----------CCEEEEEEHHHhhc
Confidence 357888987 88999999999999999999888999999987 89999999999853
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00055 Score=59.81 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=50.9
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
...++.++|.+ ++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~-----------g~~~Gvit~~dl~~ 121 (122)
T cd04635 65 ASPTVEKIMST--PVYSVTPDDSIATAVELMLEHDIGRLPVVNEK-----------DQLVGIVDRHDVLK 121 (122)
T ss_pred ccCcHHHHhcC--CCeeECCCCCHHHHHHHHHHcCCCeeeEEcCC-----------CcEEEEEEhHHhhc
Confidence 34568889987 88999999999999999999999999999987 89999999999854
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00097 Score=57.57 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=44.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.+.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~~~~ 50 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDK-----EGKYVGTISLTDILWKLK 50 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECC-----CCcEEEEEeHHHHHHHhh
Confidence 3467899999999999999999999999998 789999999999987654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00057 Score=59.99 Aligned_cols=56 Identities=20% Similarity=0.415 Sum_probs=50.3
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ ++++|+|+.+|+++
T Consensus 69 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~-----------~~~~Gvit~~di~~ 124 (125)
T cd04631 69 NEPVRSIMTR--NVITITPDDSIKDAAELMLEKRVGGLPVVDDD-----------GKLVGIVTERDLLK 124 (125)
T ss_pred hcCHHHHhcC--CceEeCCCCcHHHHHHHHHHcCCceEEEEcCC-----------CcEEEEEEHHHhhc
Confidence 4568889987 89999999999999999999998999999986 79999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0011 Score=57.23 Aligned_cols=49 Identities=24% Similarity=0.194 Sum_probs=44.2
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++.++.+++++.++.+.|.+.+.+.+||+|+ +|+++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~dl~~~~~ 50 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDR-----DGGVVGIITLPDLLRALE 50 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcC-----CCCEEEEEEHHHHHHHHh
Confidence 4568899999999999999999999999998 799999999999987654
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00077 Score=73.43 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=51.5
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
..+++++|.++|.++++++++.++.++|.+++.+.+||+|+ +++++|+||.+|+..
T Consensus 88 ~VKv~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~-----~gklvGIVT~rDL~~ 143 (479)
T PRK07807 88 WVKSRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDE-----EGRPVGVVTEADCAG 143 (479)
T ss_pred hcccccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECC-----CCeEEEEEeHHHHhc
Confidence 35678899999999999999999999999999999999998 789999999999854
|
|
| >cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00071 Score=57.63 Aligned_cols=54 Identities=24% Similarity=0.378 Sum_probs=48.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.++.++|.+ ++.++++++++.++.+.|.+.+.+.+||+|++ ++++|+++++|++
T Consensus 54 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------g~~~Gvit~~~l~ 107 (109)
T cd04583 54 KSLEDIMLE--DVFTVQPDASLRDVLGLVLKRGPKYVPVVDED-----------GKLVGLITRSSLV 107 (109)
T ss_pred CcHhHhhcC--CceEECCCCcHHHHHHHHHHcCCceeeEECCC-----------CeEEEEEehHHhh
Confidence 357888987 88999999999999999999888999999987 8999999999985
|
OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz |
| >cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00074 Score=57.75 Aligned_cols=56 Identities=23% Similarity=0.428 Sum_probs=50.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++.++|.+ ++.++++++++.++++.|.+.+...+||+|++ +++.|+++.+|+.+
T Consensus 55 ~~~v~~~~~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~di~~ 110 (111)
T cd04611 55 QTPVGEVMSS--PLLTVPADTSLYDARQLMREHGIRHLVVVDDD-----------GELLGLLSQTDLLQ 110 (111)
T ss_pred CcCHHHhcCC--CceEECCCCCHHHHHHHHHHcCCeEEEEECCC-----------CcEEEEEEhHHhhc
Confidence 4668899988 88999999999999999998888889999987 89999999999853
|
PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB |
| >cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00076 Score=57.75 Aligned_cols=55 Identities=18% Similarity=0.362 Sum_probs=49.4
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..++.++|.+ ++.++++++++.++++.|.+++.+.+||+| + ++++|+++.+|+++
T Consensus 55 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~-----------~~~~Gvvt~~di~~ 109 (110)
T cd04595 55 HAPVKDYMST--DVVTVPPDTPLSEVQELMVEHDIGRVPVVE-D-----------GRLVGIVTRTDLLR 109 (110)
T ss_pred cCcHHHHhcC--CCEEECCCCcHHHHHHHHHHcCCCeeEEEe-C-----------CEEEEEEEhHHhhc
Confidence 4578899988 889999999999999999999999999999 5 89999999999853
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00073 Score=57.66 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=47.9
Q ss_pred ccccccccccCCCeeEEcC-cccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSG-IEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~-~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.++.++|.+ ++..+.+ ++++.++++.|.+.+.+.+||+|++ ++++|+++.+|+++
T Consensus 53 ~~~v~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~-----------~~~~Gvi~~~dil~ 109 (110)
T cd04601 53 DKPVSEVMTP--ENLLTTVEGTSLEEALELLHEHKIEKLPVVDDE-----------GKLKGLITVKDIEK 109 (110)
T ss_pred CCCHHHhccc--CceEEecCCCCHHHHHHHHHHhCCCeeeEEcCC-----------CCEEEEEEhhhhhc
Confidence 3568889977 5666666 9999999999999999999999987 89999999999853
|
IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa. |
| >cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00057 Score=61.13 Aligned_cols=55 Identities=22% Similarity=0.462 Sum_probs=49.9
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
..+++++|.+ ++.++++++++.++++.|.+.+.+.+||+| + |+++|+++++|+.+
T Consensus 80 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~-----------g~~~Gvit~~di~~ 134 (135)
T cd04586 80 GRKVADVMTR--PVVTVGEDTPLAEVAELMEEHRIKRVPVVR-G-----------GRLVGIVSRADLLR 134 (135)
T ss_pred CCCHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCccCEec-C-----------CEEEEEEEhHhhhc
Confidence 4578899988 889999999999999999999999999999 6 89999999999854
|
BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0013 Score=58.20 Aligned_cols=48 Identities=38% Similarity=0.491 Sum_probs=43.2
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
++.++.+++++.++.++|.+.+.+.+||+|+ +++++|+||+.|+.+.+
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-----~~~~~G~it~~dl~~~~ 49 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDD-----NGKLTGIVTRHDIVDFV 49 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECC-----CCcEEEEEEHHHHHHHH
Confidence 3457899999999999999999999999998 78999999999998654
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >PRK15094 magnesium/cobalt efflux protein CorC; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0011 Score=67.79 Aligned_cols=57 Identities=14% Similarity=0.207 Sum_probs=51.4
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHH
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFN 588 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~ 588 (605)
..++++|++ +..+++++++++++.+.+.+++.+++||+++ + ++++|+|+.+|++...
T Consensus 67 ~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~-----~~d~iiGiv~~kDll~~~ 126 (292)
T PRK15094 67 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-----DKDHIEGILMAKDLLPFM 126 (292)
T ss_pred CEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecC-----CCCcEEEEEEHHHHHhHh
Confidence 468999987 5889999999999999999999999999986 4 7899999999998654
|
|
| >cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0012 Score=56.95 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=42.7
Q ss_pred CCceecCCCCHHHHHHHHHHcC-CcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVG-LRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~-~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+..++++++++.++.+.|.+.+ .+.+||+|+ +++++|+||.+|+.+...
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~dl~~~~~ 51 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDN-----EGRYVGIISLADLRAIPT 51 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcC-----CCcEEEEEEHHHHHHHHH
Confidence 3467899999999999997775 889999998 799999999999998654
|
CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00067 Score=58.27 Aligned_cols=55 Identities=24% Similarity=0.445 Sum_probs=49.4
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+++++|.+ ++.++++++++.++.+.|.+.+.+.+||+|++ ++++|++++.|+.+
T Consensus 58 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 112 (113)
T cd04622 58 TTVGDVMTR--GVVTVTEDDDVDEAARLMREHQVRRLPVVDDD-----------GRLVGIVSLGDLAR 112 (113)
T ss_pred CCHHHhccC--CccEECCCCCHHHHHHHHHHcCCCeeeEECCC-----------CcEEEEEEHHHhhc
Confidence 358899988 88899999999999999999888899999886 89999999999854
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0009 Score=57.43 Aligned_cols=54 Identities=24% Similarity=0.537 Sum_probs=48.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
+.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|+ ++++|+++++|+.
T Consensus 57 ~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~di~ 110 (112)
T cd04802 57 EVPVGEVMST--PLITIDPNASLNEAAKLMAKHGIKRLPVVDD------------DELVGIVTTTDIV 110 (112)
T ss_pred cCCHHHhcCC--CcEEECCCCCHHHHHHHHHHcCCCeeEEeeC------------CEEEEEEEhhhhh
Confidence 4578899987 8889999999999999999999989999986 5899999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera |
| >cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0009 Score=57.23 Aligned_cols=54 Identities=19% Similarity=0.325 Sum_probs=48.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.++.++|.+ ++.++++++++.++++.|.+.+.+.+||+|++ +++.|+++.+|+.
T Consensus 55 ~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~i~~~dl~ 108 (110)
T cd04588 55 AKVKDVMTK--DVITIDEDEQLYDAIRLMNKHNVGRLIVTDDE-----------GRPVGIITRTDIL 108 (110)
T ss_pred cCHHHHhcC--CceEECCCCCHHHHHHHHHhcCCCEEEEECCC-----------CCEEEEEEhHHhh
Confidence 457788887 88999999999999999999988999999987 8999999999985
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. |
| >cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0011 Score=56.95 Aligned_cols=50 Identities=26% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+|+.+|+.+...+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-----~~~~~G~v~~~~l~~~~~~ 51 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDD-----NGNLVGFLSEQDCLKQLLE 51 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECC-----CCeEEEEeehHHHHHHhhh
Confidence 4568899999999999999999999999998 7899999999999875543
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0011 Score=58.52 Aligned_cols=51 Identities=18% Similarity=0.245 Sum_probs=45.5
Q ss_pred cccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 415 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 415 diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.|.+ ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+|+.+|+++
T Consensus 75 ~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~-----------~~~~Giit~~dil~ 125 (126)
T cd04642 75 GVKSR--PLITCTPSSTLKEVITKLVANKVHRVWVVDEE-----------GKPIGVITLTDIIS 125 (126)
T ss_pred ccccC--CCeEECCCCcHHHHHHHHHHhCCcEEEEECCC-----------CCEEEEEEHHHHhc
Confidence 45666 78899999999999999999988999999987 89999999999853
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00098 Score=57.15 Aligned_cols=55 Identities=18% Similarity=0.262 Sum_probs=49.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.+++++|.+ ++..+++++++.++++.|.+++...+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~dl~~ 110 (111)
T cd04589 56 STPVGEIATF--PLITVDPDDFLFNALLLMTRHRIHRVVVREG------------GEVVGVLEQTDLLS 110 (111)
T ss_pred CCCHHHHhCC--CcEEECCCCcHHHHHHHHHHhCccEEEEeeC------------CEEEEEEEhHHhhc
Confidence 3468889988 8899999999999999999999999999986 68999999999854
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0012 Score=72.59 Aligned_cols=62 Identities=16% Similarity=0.280 Sum_probs=55.3
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+++++|+++++++++++++++.++++.|.+++...+||+|++ ++++|+|+++|+.+.+..
T Consensus 162 ~~~V~eIMt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~-----------g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 162 ETKLSEVMTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNED-----------GELVDLVTRTDVKRVKGY 223 (505)
T ss_pred CCcHHHHhccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHhhC
Confidence 46789999983348899999999999999999999999999987 899999999999987764
|
|
| >cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0013 Score=56.25 Aligned_cols=55 Identities=22% Similarity=0.398 Sum_probs=49.5
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++..|+.+
T Consensus 56 ~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~-----------~~~~G~it~~di~~ 110 (111)
T cd04612 56 VLVGDVMTR--DPVTASPDETLRDALKRMAERDIGRLPVVDDS-----------GRLVGIVSRSDLLR 110 (111)
T ss_pred cCHHHhccC--CCeEECCCCCHHHHHHHHHhCCCCeeeEEcCC-----------CCEEEEEEHHHhhh
Confidence 467788988 89999999999999999999988999999987 89999999999853
|
SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an |
| >COG0517 FOG: CBS domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0012 Score=56.93 Aligned_cols=52 Identities=21% Similarity=0.444 Sum_probs=48.4
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhc-CCCCeeeeecCCCCCCCCCCCCCc-eEEEeEeHHHH
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRN-TTHNGFPVLDEGVVPPSGLANVAT-ELHGLILRAHL 476 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~-~~~~~~PVvd~~~~~~~~~~~~~~-~lvGiVs~~dl 476 (605)
++.++|.+ ++.++.+++++.++.+.|.+ ++++.+||+|++ + +++|+++++|+
T Consensus 63 ~v~~v~~~--~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~-----------~~~lvGivt~~di 116 (117)
T COG0517 63 PVKEVMTK--PVVTVDPDTPLEEALELMVERHKIRRLPVVDDD-----------GGKLVGIITLSDI 116 (117)
T ss_pred cHHHhccC--CcEEECCCCCHHHHHHHHHHHcCcCeEEEEECC-----------CCeEEEEEEHHHc
Confidence 68899998 89999999999999999999 799999999986 6 99999999987
|
|
| >cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0016 Score=57.43 Aligned_cols=46 Identities=30% Similarity=0.470 Sum_probs=42.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
++.++++++++.++++.|.+.+.+.+||+|+ +|+++|+++.+|+.+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~-----~~~~~Giv~~~dl~~ 47 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDS-----DDNFIGVITAVDLLG 47 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcC-----CCcEEEEEEHHHHhh
Confidence 3568899999999999999999999999998 789999999999985
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0018 Score=55.44 Aligned_cols=50 Identities=12% Similarity=0.122 Sum_probs=44.5
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~~ 590 (605)
+..++++++++.++.+.|.+.+.+.+||+|+ + ++++|++|.+|+.+...+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~-----~~~~~~G~v~~~~l~~~~~~ 52 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDG-----DLDNIIGVVHVKDLLRALAE 52 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECC-----CCceEEEEEEHHHHHHHHHc
Confidence 3467899999999999999999999999998 6 899999999999987654
|
CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, |
| >cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0013 Score=56.36 Aligned_cols=55 Identities=25% Similarity=0.364 Sum_probs=49.4
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.+
T Consensus 56 ~~~i~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Giit~~di~~ 110 (111)
T cd04800 56 DTPVSEVMTA--PPITIPPDATVFEALLLMLERGIHHLPVVDD------------GRLVGVISATDLLR 110 (111)
T ss_pred cCCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCeeeEeEC------------CEEEEEEEHHHhhc
Confidence 3568899988 8899999999999999999999999999986 68999999999854
|
Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa |
| >cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0024 Score=54.06 Aligned_cols=51 Identities=31% Similarity=0.287 Sum_probs=45.1
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +++++|+++++|+++.....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-----~~~~~G~v~~~~l~~~~~~~ 52 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDD-----DGRLVGIVTERDLLRALAEG 52 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECC-----CCCEEEEEeHHHHHHHHHhc
Confidence 3467889999999999999999999999998 78999999999999877653
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali |
| >cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0013 Score=58.51 Aligned_cols=50 Identities=20% Similarity=0.157 Sum_probs=44.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++.+++++.++.+.|.+.+.+++||+|+ +++++|++++.|+.+....
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-----~~~~~G~i~~~~l~~~~~~ 51 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDN-----EGRVVGIVSEGDLIRKIYK 51 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECC-----CCCEEEEEeHHHHHHHHhc
Confidence 4568899999999999999999999999998 7899999999999976643
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0011 Score=57.92 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=49.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ ++++|+++..|+++
T Consensus 67 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvit~~dll~ 121 (122)
T cd04637 67 RRAHQIMTR--DPITVSPDTPVDEASKLLLENSISCLPVVDEN-----------GQLIGIITWKDLLK 121 (122)
T ss_pred hHHHHhhcC--CCeeeCCCCcHHHHHHHHHHcCCCeEeEECCC-----------CCEEEEEEHHHhhh
Confidence 468899988 89999999999999999999998999999987 89999999999864
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0011 Score=71.13 Aligned_cols=62 Identities=26% Similarity=0.371 Sum_probs=56.0
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
..+.++++.++++|++++|+.+|.+.|.+.|.+.+.|+|+ +++..||||++|+......+-.
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~-----~~~~~GIvT~~dl~~~v~~~g~ 210 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDD-----SGPLLGIVTRKDLRSRVIADGR 210 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcC-----CCCccceeehHHHHHHHHhcCC
Confidence 4578889999999999999999999999999998999988 8999999999999998875433
|
|
| >cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0021 Score=55.01 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=43.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ +|+++|+++.+|+.+...
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-----~~~~~G~v~~~dl~~~~~ 50 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDN-----EEKLKGVVTFTDILDLDL 50 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcC-----CCCEEEEEehHHhHHHHh
Confidence 3467899999999999999999999999998 799999999999987543
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0016 Score=70.95 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=50.7
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC---CceEEEEeHHHhHH
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV---SPVVGILTRQDLRA 586 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~---g~lvGiITr~Dll~ 586 (605)
.++++.|.+++.++++++++.++.++|.+++++.+||+|+ + ++++|+||.+|+..
T Consensus 80 k~~~~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~-----~~~~~~lvGIVt~rDL~~ 137 (450)
T TIGR01302 80 KRAENGIISDPVTISPETTVADVLELMERKGISGIPVVED-----GDMTGKLVGIITKRDIRF 137 (450)
T ss_pred ccccCceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeC-----CCCCCeEEEEEEHHHHhh
Confidence 4577888999999999999999999999999999999998 5 79999999999975
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0013 Score=57.30 Aligned_cols=56 Identities=29% Similarity=0.587 Sum_probs=49.9
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
...++.++|.+ +..++++++++.++++.|.+.+.+.+||+|+ ++++|+++.+|+++
T Consensus 65 ~~~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~Gvi~~~dl~~ 120 (121)
T cd04633 65 RNLPVSDIMTR--PVITIEPDTSVSDVASLMLENNIGGLPVVDD------------GKLVGIVTRTDILR 120 (121)
T ss_pred hccCHHHHccC--CceEECCCCcHHHHHHHHHHcCCCcccEEEC------------CEEEEEEEHHHhhc
Confidence 45678899988 8899999999999999999999999999987 68999999999853
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0015 Score=55.14 Aligned_cols=53 Identities=21% Similarity=0.358 Sum_probs=48.0
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
.++.++|.+ ++.++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+.
T Consensus 51 ~~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~------------~~~~G~it~~~l~ 103 (105)
T cd04599 51 RLVADAMTR--EVVTISPEASLLEAKRLMEEKKIERLPVLRE------------RKLVGIITKGTIA 103 (105)
T ss_pred CCHHHHccC--CCEEECCCCCHHHHHHHHHHcCCCEeeEEEC------------CEEEEEEEHHHhc
Confidence 357888988 8899999999999999999999999999986 7999999999984
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0015 Score=55.45 Aligned_cols=53 Identities=13% Similarity=0.201 Sum_probs=47.1
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
++.++|.+ +..++++++++.++++.|.+++.+.+||+|+ ++++|+++.+|+..
T Consensus 51 ~~~~~~~~--~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~------------~~~iGvit~~dl~~ 103 (104)
T cd04594 51 DVVDYIVR--GIPYVRLTSTAEEAWEVMMKNKTRWCPVVDD------------GKFKGIVTLDSILD 103 (104)
T ss_pred chhhhhhc--CCcEEcCCCCHHHHHHHHHHcCcceEEEEEC------------CEEEEEEEHHHhhc
Confidence 46778887 7889999999999999999999999999984 79999999999853
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do |
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0017 Score=65.21 Aligned_cols=114 Identities=20% Similarity=0.195 Sum_probs=80.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
.+-++++++|.+.+....-.+...-..+...+.+.....+.+++.+ ++.+|+|+..++...
T Consensus 271 ~~VltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~-----------~~~~g~v~~~~~~~~-------- 331 (386)
T COG4175 271 SRVLTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRG-----------NKFVGVVSIDSLVKA-------- 331 (386)
T ss_pred hheeeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhcc-----------CceeeEEeccchhcc--------
Confidence 4556888999851112222222333456667776666666677765 679999987666321
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
.+.+.+.++.+++++.+.+....+... .++|+|+
T Consensus 332 --------------------------------------------~~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde- 365 (386)
T COG4175 332 --------------------------------------------ALIDDVLTVDADTPLSEILARIRQAPC-PVAVVDE- 365 (386)
T ss_pred --------------------------------------------cccccccccCccchHHHHHHHHhcCCC-ceeEEcC-
Confidence 223566788999999999998887666 6899999
Q ss_pred ccCCCCceEEEEeHHHhHHHHhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++++|+|++.++++++..
T Consensus 366 ----~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 366 ----DGRYVGIISRGELLEALAR 384 (386)
T ss_pred ----CCcEEEEecHHHHHHHHhc
Confidence 8999999999999988753
|
|
| >KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0013 Score=71.19 Aligned_cols=101 Identities=14% Similarity=0.101 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHhhcccC--CCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh
Q 007394 283 FFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLGMAMGSYTN--IDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360 (605)
Q Consensus 283 ~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g~~~~~~~~--~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t 360 (605)
-+++|-+..++++++|.+-|.++|+..++.++|.++.++++++.. +-..-+....+||..|.++++|++++++.+|-.
T Consensus 180 tl~iKsVal~lsvaSGLSlGKEGP~VHiA~c~g~~~s~~f~~~~~~e~~~reilsAaaAaGvavaFgAPIGGVlFslEev 259 (696)
T KOG0475|consen 180 TLLIKSVALCLSVASGLSLGKEGPSVHIATCIGNIFSKIFPKYRLNEAKKREILSAAAAAGVAVAFGAPIGGVLFSLEEV 259 (696)
T ss_pred HHhhhhhhheeeeccccccCCCCCceeeeechhhhHhhhhhhhccchhHHHHHHHHHhhccchhhcCCccceeeeehhhh
Confidence 356899999999999999999999999999999999999987522 334556677788888999999999999999976
Q ss_pred cCCc---chHHHHHHHHHHHHHHhhc
Q 007394 361 NNLL---LLPITMIVLLIAKTVGDSF 383 (605)
Q Consensus 361 g~~~---~l~p~~~a~~~a~~v~~~l 383 (605)
-.+. .+---..++++|..+.+.+
T Consensus 260 ~~~fp~ktlw~sff~aLsAv~~L~~i 285 (696)
T KOG0475|consen 260 SYYFPLKTLWRSFFCALSAVTALRSI 285 (696)
T ss_pred hhcCCccchHHHHHHHHHHHHHHeee
Confidence 5322 2222233445555555444
|
|
| >cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0024 Score=55.47 Aligned_cols=48 Identities=35% Similarity=0.529 Sum_probs=43.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
++.++++++++.++.+.|.+.+.+++||+|+ +++++|+++.+|+.+..
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~-----~~~~~G~v~~~~l~~~~ 49 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDE-----EGRLVGIVTDRDLRDAS 49 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECC-----CCcEEEEEEHHHHHHHh
Confidence 4568899999999999999999999999998 79999999999998754
|
Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in |
| >cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0029 Score=53.86 Aligned_cols=49 Identities=29% Similarity=0.326 Sum_probs=43.3
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++.+++++.++.+.|.+.+.+.+||+|+ ++++|++|.+|+.+...+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~------~~~~G~v~~~dl~~~~~~ 50 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD------GRVVGSIDESDLLDALIE 50 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC------CeeEEEEeHHHHHHHHhc
Confidence 3467899999999999999999999999986 789999999999987543
|
The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote |
| >cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0021 Score=54.83 Aligned_cols=49 Identities=27% Similarity=0.379 Sum_probs=44.3
Q ss_pred ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 416 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 416 iM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
+|.+ ++.++++++++.++.+.|.+++.+.+||+++ ++++|+++++|+.+
T Consensus 56 ~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~~------------~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 YIDP--SPFTVSPRTSLEKVHQLFRKLGLRHLLVVDE------------GRLVGIITRKDLLK 104 (105)
T ss_pred hccC--CCceECCCCcHHHHHHHHHHcCCCEEEEEEC------------CeEEEEEEhhhhhc
Confidence 7877 8889999999999999999999999999964 79999999999854
|
These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS |
| >COG4109 Predicted transcriptional regulator containing CBS domains [Transcription] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0031 Score=63.70 Aligned_cols=62 Identities=19% Similarity=0.319 Sum_probs=56.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
..+.++..+|++ ++.++.+.+++..+.+.|--.++.-+||+|++ .+++|+|+|+|+++.+..
T Consensus 246 ~~~t~ieKVMtk--np~tv~~~tsVAsvaq~MiwE~iem~PVv~~n-----------~~llGiitR~dvlk~lq~ 307 (432)
T COG4109 246 KPSTTIEKVMTK--NPITVRAKTSVASVAQMMIWEGIEMLPVVDSN-----------NTLLGIITRQDVLKSLQM 307 (432)
T ss_pred CCCccHHHHhcc--CCeeecccchHHHHHHHHHhccceeeeEEcCC-----------ceEEEEEEHHHHHHHHHH
Confidence 345678899999 99999999999999999999999999999998 899999999999987765
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0055 Score=65.01 Aligned_cols=50 Identities=12% Similarity=0.254 Sum_probs=42.8
Q ss_pred cccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 533 TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 533 m~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
+.++..++++++++.+++....+.+. -++|+|+ |+++|+|++.++++.+.
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 331 LEAAPTVINPDTLMRDVLAARHRTGG-AILLVEN------GRIVGVIGDDNIYHALL 380 (382)
T ss_pred hcccCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------CeEEEEEeHHHHHHHHh
Confidence 34566789999999999999888776 5888875 99999999999998875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0039 Score=56.49 Aligned_cols=49 Identities=20% Similarity=0.314 Sum_probs=43.6
Q ss_pred CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 536 TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 536 ~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++.++++++++.++.+.|.+.+.+.+||+|+ ++++|++|+.|+.+.+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~------~~~~G~v~~~dl~~~~~~ 50 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG------GKLVGIVSESDILKLLVT 50 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC------CeEEEEecHHHHHHHHHh
Confidence 4568899999999999999999999999986 789999999999876643
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0044 Score=53.73 Aligned_cols=55 Identities=11% Similarity=0.140 Sum_probs=46.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCC---eeeeecCCCCCCCCCCCCCceEEEeEeHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHN---GFPVLDEGVVPPSGLANVATELHGLILRAHLV 477 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~---~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~ 477 (605)
+.+++++|.+ ++..+++++++.++++.|.+++.. ..||++++ ++++|+|+..|+.
T Consensus 60 ~~~v~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~-----------~~~~Gvvs~~di~ 117 (119)
T cd04598 60 KKPVSEVMDP--DPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEE-----------GRYLGIGTVKDLL 117 (119)
T ss_pred CCcHHHhcCC--CcEEecCCCCHHHHHHHHHcCCcccccccEEEeeC-----------CeEEEEEEHHHHh
Confidence 4568899988 899999999999999999887643 44688877 8999999999985
|
The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0035 Score=68.79 Aligned_cols=57 Identities=18% Similarity=0.288 Sum_probs=48.5
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
..++.|.++|.++++++++.++.++|.+++.+.+||+|+ ...+++++|+||.+|+..
T Consensus 97 ~~e~g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~--~~~~gkLvGIVt~~DL~~ 153 (495)
T PTZ00314 97 RFENGFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVD--GKVGGKLLGIVTSRDIDF 153 (495)
T ss_pred ccccccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeC--CccCCeEEEEEEHHHHhh
Confidence 356678899999999999999999999999999999986 001279999999999863
|
|
| >cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0073 Score=51.18 Aligned_cols=53 Identities=21% Similarity=0.313 Sum_probs=46.6
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~ 478 (605)
++.++|.+ ++.++++++++.++.+.|.+.+.+.+||+|+ ++++|+++.+|+.+
T Consensus 53 ~~~~~~~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~------------~~~~G~it~~d~~~ 105 (106)
T cd04638 53 QLALLMTR--DPPTVSPDDDVKEAAKLMVENNIRRVPVVDD------------GKLVGIVTVADIVR 105 (106)
T ss_pred hHHHHhcC--CCceECCCCCHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHhhc
Confidence 46677877 7888999999999999999999889999985 69999999999853
|
CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener |
| >COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0068 Score=65.16 Aligned_cols=60 Identities=15% Similarity=0.324 Sum_probs=55.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+..++++|.+ +++++.++++.+++.+.+++++.-..||||++ ++++|+++..|++..+..
T Consensus 195 ~~~i~~im~~--~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~~-----------~~LiG~itiDDiidvi~e 254 (451)
T COG2239 195 DELLKDLMED--DVVSVLADDDQEEVARLFEKYDLLAVPVVDED-----------NRLIGIITIDDIIDVIEE 254 (451)
T ss_pred HhHHHHHhcc--cceeecccCCHHHHHHHHHHhCCeecceECCC-----------CceeeeeeHHHHHHHHHH
Confidence 4578899999 89999999999999999999999999999998 999999999999988765
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.023 Score=59.98 Aligned_cols=57 Identities=23% Similarity=0.317 Sum_probs=50.5
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
.+++.|.+ ++.++++++++.+++..+.++++. +||+|++ ++++|+|++.+++..+..
T Consensus 303 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~i~~~~~~~~~~~ 359 (363)
T TIGR01186 303 GLQDVLID--DIYTVDAGTLLRETVRKVLKAGIK-VPVVDED-----------QRLVGIVTRGSLVDALYD 359 (363)
T ss_pred chhhhhcc--CCceECCCCcHHHHHHHHHhCCCC-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence 46677777 788999999999999999999888 9999988 999999999999887654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11573 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.03 Score=60.28 Aligned_cols=58 Identities=2% Similarity=0.023 Sum_probs=49.6
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
.+++++|++ +...++.+++++++.+.+.+++++++||.++ ..++++|+|..+|++...
T Consensus 187 ~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~----~~D~IiGiv~~kDll~~~ 246 (413)
T PRK11573 187 VTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRD----SLDDAISMLRVREAYRLM 246 (413)
T ss_pred CChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcC----CCCceEEEEEHHHHHHHh
Confidence 457888876 5567899999999999999999999999876 147899999999999754
|
|
| >COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.043 Score=59.47 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=52.5
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
.+++++|++ +...++.+.+.+++.+.+.+++++++||.++ ..+.++|+++.+|++.+..+.
T Consensus 206 ~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~----~~D~iiGiv~~Kdll~~~~~~ 268 (429)
T COG1253 206 RTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDG----DLDNIIGIVHVKDLLRALLDG 268 (429)
T ss_pred cEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcC----CCCcEEEEEEHHHHHHHHhcC
Confidence 458888886 4467788999999999999999999999984 167899999999999988765
|
|
| >COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.045 Score=52.59 Aligned_cols=61 Identities=15% Similarity=0.200 Sum_probs=52.0
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+.++|+|-+ ...++..+.++.+.+..+.+..++++||+.+ ..+.+.||+--+||++.+...
T Consensus 67 l~vrDiMIPRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e----dkD~v~GIL~AKDLL~~~~~~ 129 (293)
T COG4535 67 LRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE----DKDHVEGILLAKDLLPFMRSD 129 (293)
T ss_pred hhHhhhcccHHHheeccccCCHHHHHHHHHHhccccCCcccC----CchhhhhhhhHHHHHHHhcCC
Confidence 457888875 4468899999999999999999999999965 257899999999999977654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.081 Score=56.63 Aligned_cols=57 Identities=18% Similarity=0.336 Sum_probs=49.2
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
++++.+.+ +..++++++++.+++..+.++... +||||++ ++++|+|++.++++.+..
T Consensus 338 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~-----------~~~~g~~~~~~~~~~~~~ 394 (400)
T PRK10070 338 GLDAALID--APLAVDAQTPLSELLSHVGQAPCA-VPVVDED-----------QQYVGIISKGMLLRALDR 394 (400)
T ss_pred chhhhhcc--CCceeCCCCCHHHHHHHHHhCCCc-EEEECCC-----------CcEEEEEEHHHHHHHHHh
Confidence 46667766 788999999999999999886655 9999988 999999999999988765
|
|
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.095 Score=54.30 Aligned_cols=57 Identities=19% Similarity=0.340 Sum_probs=51.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
...+.|+|++ +.++.+.+.+++++-+++++++...+||||++ ++++-++++.||.+.
T Consensus 170 ~~~~~~vmt~--~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~-----------gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 170 SLLVSDVMTK--NPVTGAQGITLKEANEILKKIKKGKLPVVDDK-----------GELVAMLSRTDLMKN 226 (503)
T ss_pred cchhhhhccc--ccccccccccHHHHHHHHHhhhcCCcceeccC-----------Cceeeeeehhhhhhh
Confidence 4567899999 66888999999999999999988899999998 999999999999664
|
|
| >KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown] | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.14 Score=56.18 Aligned_cols=135 Identities=16% Similarity=0.120 Sum_probs=89.9
Q ss_pred ccccccccccccccCCCeeEEcCcccHH-HHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhch
Q 007394 406 PWMRTLTVGELIDAKPPVITLSGIEKVS-QIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 484 (605)
Q Consensus 406 ~~l~~~~v~diM~~~~~v~~v~~~~tl~-~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~ 484 (605)
..+....++|+|++-.++..+..+..+. +......+++++.+||.+.+ ...++.+.+. ..+..++....
T Consensus 199 l~l~ek~~~evmtpi~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~---------~~~~i~~~L~-~~~~~~~~~~~ 268 (498)
T KOG2118|consen 199 LELTEKLVGEVMTPIEDVFALDANTKLDRETVGEIVKHGYSRIPVYEQE---------PKNKIGGLLV-MNLLRLLQVEV 268 (498)
T ss_pred HHHHHHHHHHhccchhhheeeccccccchHHHhhHhhcCcceeeeccCc---------ccchhhHHHH-hhhhhhhcccc
Confidence 3466788999999977777777777765 55556668899999999875 2223333222 23322221100
Q ss_pred hhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEc
Q 007394 485 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 564 (605)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVV 564 (605)
.....++.+.+......+++++++.+.++.|++.+.+.+.|.
T Consensus 269 --------------------------------------~~~~~~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~ 310 (498)
T KOG2118|consen 269 --------------------------------------PLEPLPVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVR 310 (498)
T ss_pred --------------------------------------ccccccchhhhccccccCCCcccHHHHHHHHhhhhceeEEEe
Confidence 011245667777888889999999999999998777655554
Q ss_pred cccccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 565 PKYEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 565 d~~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
+ ...-.+++|..|+ +...++...+
T Consensus 311 ~------~~~~~~~~~l~~~-~~~~~ev~de 334 (498)
T KOG2118|consen 311 N------GHVDIFVLTLEDL-EEVVKEVEDE 334 (498)
T ss_pred c------CCcceeeEeccch-hhhcceeccc
Confidence 4 3668899999998 5555444333
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.26 E-value=1.5 Score=43.33 Aligned_cols=43 Identities=28% Similarity=0.264 Sum_probs=35.9
Q ss_pred ecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 540 VIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 540 v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
+.....-.+++..+...+...+||+|+ +|+++|.||+.|++..
T Consensus 266 ~~~~~~~~~~ls~~~~~~~~~~~Vvd~-----~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 266 LLEGFVDRDALSDFLARGRSVLPVVDE-----DGRPLGTVTRADLLDE 308 (309)
T ss_pred cccchhhHHHHHHHHhcCCceeEEECC-----CCcEeeEEEHHHHhhh
Confidence 344455566888888899999999999 8999999999999864
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=85.52 E-value=1.5 Score=46.60 Aligned_cols=54 Identities=13% Similarity=0.184 Sum_probs=43.6
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHh
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 481 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~ 481 (605)
++.+ +.+ +..++++++++.+++....++++ .+||+|+ |+++|+|++.+++..+.
T Consensus 327 ~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~------------~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 327 EVES-LEA--APTVINPDTLMRDVLAARHRTGG-AILLVEN------------GRIVGVIGDDNIYHALL 380 (382)
T ss_pred chhh-hcc--cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC------------CeEEEEEeHHHHHHHHh
Confidence 3455 455 67889999999999998887664 4788875 89999999999988764
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.19 E-value=6.3 Score=41.00 Aligned_cols=55 Identities=13% Similarity=0.182 Sum_probs=44.9
Q ss_pred cccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 007394 415 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480 (605)
Q Consensus 415 diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l 480 (605)
++++-..++..+++.+++.+-+..|++++.+---|||+. |.+.|+||.+|++.-+
T Consensus 269 d~~~~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDEY-----------G~i~GLVTLEDIlEEI 323 (423)
T COG4536 269 DILRAADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDEY-----------GDIQGLVTLEDILEEI 323 (423)
T ss_pred HHHHHhcCCeecCCCCcHHHHHHHHHHhcceEEEEEecc-----------CcEEeeeeHHHHHHHH
Confidence 444322368899999999999999988877777899998 9999999999997643
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.18 E-value=3 Score=42.53 Aligned_cols=53 Identities=26% Similarity=0.369 Sum_probs=44.1
Q ss_pred ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 416 LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 416 iM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
.+.+ ++.++..++++.+.+....+.+ ..+||+|++ ++++|++++.+++.+|.+
T Consensus 332 ~~~~--~~~~v~~d~~~~~~~~~~~~~~-~p~aVvde~-----------~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 332 ALID--DVLTVDADTPLSEILARIRQAP-CPVAVVDED-----------GRYVGIISRGELLEALAR 384 (386)
T ss_pred cccc--cccccCccchHHHHHHHHhcCC-CceeEEcCC-----------CcEEEEecHHHHHHHHhc
Confidence 4555 7788999999999988887765 358999998 999999999999887654
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 605 | ||||
| 3org_A | 632 | Crystal Structure Of A Eukaryotic Clc Transporter L | 4e-10 | ||
| 1kpl_A | 473 | Crystal Structure Of The Clc Chloride Channel From | 5e-09 | ||
| 3nd0_A | 466 | X-Ray Crystal Structure Of A Slow Cyanobacterial Cl | 6e-05 |
| >pdb|3ORG|A Chain A, Crystal Structure Of A Eukaryotic Clc Transporter Length = 632 | Back alignment and structure |
|
| >pdb|1KPL|A Chain A, Crystal Structure Of The Clc Chloride Channel From S. Typhimurium Length = 473 | Back alignment and structure |
|
| >pdb|3ND0|A Chain A, X-Ray Crystal Structure Of A Slow Cyanobacterial Cl-H+ ANTIPORTER Length = 466 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} Length = 632 | Back alignment and structure |
|---|
Score = 430 bits (1108), Expect = e-144
Identities = 129/601 (21%), Positives = 223/601 (37%), Gaps = 91/601 (15%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
L K +G I A+ GL +G EGP VHI IA + G +
Sbjct: 99 ALELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYRLGV--------FKELCT 150
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
+ R + + G+ ++F AP+GGVL+S+E +A+++ W+ S +V
Sbjct: 151 DRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYEL 210
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVR-YHVMDIIPVTLIGIIGGILGGLYNHILHKV 179
+ T + F+ +N + ++G + G+LG L+ + +
Sbjct: 211 L-----------YTTPLVEAFEGTNFDASDVSRTQTLLYAILGALMGVLGALFIRCVRSI 259
Query: 180 LRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFK 239
L + ++ L V++F S QY
Sbjct: 260 YELR--MRHYPGTNRYFLVGVVALFASALQYPFRLF------------------------ 293
Query: 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAV 299
P NDL + D F + +++ I+ IL ++ G+ +
Sbjct: 294 -ALDPRATINDLFKAVPLYQTD------------HFGWTELILMPIIKFILVALSIGLPL 340
Query: 300 PSGLFLPIILMGSAYGRLLGMAMGSY--TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFL 357
P+G+F+P L+G+ +GRL G M I G YAV+GAA+ AG R +S VI
Sbjct: 341 PAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPGSYAVVGAAAFTAGVTR-ALSCAVIIF 399
Query: 358 ELTNNL-LLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGEL 416
E+T + L+P+ +I +L+A VG++FN S+YE ++ +K LP++ +T E+
Sbjct: 400 EVTGQIRHLVPV-LISVLLAVIVGNAFNRSLYETLVLMKHLPYMPILRRDRSPEMTAREI 458
Query: 417 IDAKPPVITLSGIEKVSQIVDVLRNTT-HNGFPVLDEGVVPPSGLANVATELHGLILRAH 475
+ L + I +L FPV+D L G I R
Sbjct: 459 MHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDA-----------NGYLLGAISRKE 507
Query: 476 LVLALKKKWFLQEKRRTEE---------WEVREKFSWVELAEREGKIEEVAVTSEEMEMY 526
+V L+ + V+ + T+ +E
Sbjct: 508 IVDRLQHVLEDVPEPIAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPT 567
Query: 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586
L + +P V V + LF + + V + +VGI+ R+D+
Sbjct: 568 SSLVVPCDVSPIVVTSYSLVRQLHFLFVMLMPSMIYVTER------GKLVGIVEREDVAY 621
Query: 587 F 587
Sbjct: 622 G 622
|
| >1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... Length = 465 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 3e-44
Identities = 79/394 (20%), Positives = 150/394 (38%), Gaps = 76/394 (19%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
L VK G +G + G+ LG+EGP V IG I ++ R D R
Sbjct: 127 VLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFR-LKGDEAR 174
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVV--VVLRAFIE 123
L+ G+++G+ AAF AP+ G+LF +EE+ +R L+ V++ ++ R F
Sbjct: 175 HTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIFN- 233
Query: 124 ICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLY 183
+ + DV + + + ++GII GI G ++N + + L
Sbjct: 234 ------------HEVALIDVGKLSD-APLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLL 280
Query: 184 NLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNC 243
+ ++ +L+ ++ + + P
Sbjct: 281 HRVHGGNITKWVLMGGAIGGLCGLLGFVAP------------------------------ 310
Query: 244 PNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 303
+ + + N ++ F+ I L+ F P G+
Sbjct: 311 ----------ATSGGGFNLIPIATAGNFSMGM----LVFIFVARVITTLLCFSSGAPGGI 356
Query: 304 FLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
F P++ +G+ G GM +++ G +A+ G +L+A S+R ++ ++ LE+T
Sbjct: 357 FAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMT 416
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNP-SIYEIILE 393
+N L+ +I L A + +Y IL
Sbjct: 417 DNYQLILPMIITGLGATLLAQFTGGKPLYSAILA 450
|
| >3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A Length = 466 | Back alignment and structure |
|---|
Score = 154 bits (392), Expect = 3e-41
Identities = 77/407 (18%), Positives = 150/407 (36%), Gaps = 80/407 (19%)
Query: 6 TLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDR 65
L +K++G ++ AG+ G EGP + +G I + G W + ++
Sbjct: 123 VLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGG-----------WFKA--TQENQ 169
Query: 66 RDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVV--VVLRAFIE 123
R LI G+ +G+ AF AP+ GV EE+ +RS L V+ ++LR
Sbjct: 170 RILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRMIR- 228
Query: 124 ICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLY 183
G + ++ + + ++GI+ G++G +N L KVL +
Sbjct: 229 ------------GQSAIISLTEFKR-VPLDSLWMFIILGILFGVMGYTFNRGLFKVLDWF 275
Query: 184 NLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQFNC 243
+ + K L S+ S+
Sbjct: 276 DRLPPLATKWKGFLLGSIIGILSLF----------------PLP---------------- 303
Query: 244 PNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 303
L D+AV F+S + +++ F +L LI +G G+
Sbjct: 304 -----------LTDGGDNAVLWAFNSQSHFST----LILVFCGRFLLTLICYGSGAIGGI 348
Query: 304 FLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT 360
F P++ + S + + + A+ G +L+A ++R ++ ++ +E+T
Sbjct: 349 FAPMLGIASIVSVAMARHFHLLFPSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMT 408
Query: 361 NNLLLLPITMIVLLIAKTVGDSFNP-SIYEIILELKGLPFLDAHPEP 406
+N ++ ++ L+A V ++ IY ++LE P
Sbjct: 409 DNYFVILPLLVTCLVASVVAEALGGKPIYTVLLERTLAKQNRGSLVP 455
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* Length = 185 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 8e-26
Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 33/184 (17%)
Query: 405 EPWMRTLTVGEL----IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGL 460
E + ++ + + V + ++ TT++GFPV+
Sbjct: 5 EEFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQ---- 60
Query: 461 ANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTS 520
L G +LR L+++++ R+K V E
Sbjct: 61 -----RLVGFVLRRDLIISIENA--------------RKKQDGVVSTSIIYFTEHSPPLP 101
Query: 521 EEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILT 580
+ L + + +P+TV + + + +FR++GLR LV ++GI+T
Sbjct: 102 PYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN------GRLLGIIT 155
Query: 581 RQDL 584
++D+
Sbjct: 156 KKDV 159
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} Length = 164 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 6e-09
Identities = 27/188 (14%), Positives = 61/188 (32%), Gaps = 46/188 (24%)
Query: 398 PFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPP 457
P + + V + + TL+ + ++V V+ +T +P+++
Sbjct: 1 PRILGRNIG-SHHVRVEHFM--NHSITTLAKDTPLEEVVKVVTSTDVTEYPLVESTESQ- 56
Query: 458 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVA 517
L G++ RA LV AL+ + + + +
Sbjct: 57 --------ILVGIVQRAQLVQALQAEPPSRAPGHQQCLQDILARGCP------------- 95
Query: 518 VTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVG 577
T T+ ++ +A LF+ + L+ L V + G VG
Sbjct: 96 ---------------TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVT----SRGR--AVG 134
Query: 578 ILTRQDLR 585
++ +++
Sbjct: 135 CVSWVEMK 142
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 7e-09
Identities = 36/178 (20%), Positives = 63/178 (35%), Gaps = 28/178 (15%)
Query: 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGL 470
TVG+ + + + + V +++L G PV+D+ L G+
Sbjct: 4 YTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-----------WTLVGV 52
Query: 471 ILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLH 530
+ L+ Q ++ EL + K V + M
Sbjct: 53 VSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVV-GDLM------- 104
Query: 531 PLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAF 587
+P V +S ++ A L + R L VV +A G ++GILTR + +RA
Sbjct: 105 ---TPSPLVVRDSTNLEDAARLLLETKFRRLPVV---DADGK--LIGILTRGNVVRAA 154
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 1e-07
Identities = 27/183 (14%), Positives = 51/183 (27%), Gaps = 47/183 (25%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEG--VVPPSGLANVAT 465
M+ V +LI + + +IVD + + +V
Sbjct: 13 MKVKDVCKLI--SLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARDNKLV---------- 60
Query: 466 ELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEM 525
G+I HL+ +F + ++ E+ M
Sbjct: 61 ---GMIPVMHLLKVSGFHFFGFIPKEELIRSSMKRLI-------AKNASEI--------M 102
Query: 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-L 584
P V + +A+ L ++ + VV + G +VG L + L
Sbjct: 103 ---------LDPVYVHMDTPLEEALKLMIDNNIQEMPVV---DEKGE--IVGDLNSLEIL 148
Query: 585 RAF 587
A
Sbjct: 149 LAL 151
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 Length = 250 | Back alignment and structure |
|---|
Score = 51.2 bits (121), Expect = 3e-07
Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 7/67 (10%)
Query: 520 SEEMEMYIDLHPLT-NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578
E + ++ + +P+ ++E S+ K LF +GL V +VG+
Sbjct: 181 QREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM------GKLVGV 234
Query: 579 LTRQDLR 585
+ +++
Sbjct: 235 VALAEIQ 241
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 7e-06
Identities = 36/182 (19%), Positives = 57/182 (31%), Gaps = 52/182 (28%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
+TV + V + + + VL T ++ PVLD +L
Sbjct: 8 FMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-----------YKL 56
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
HGLI ++ A+ E+ + L K+EEV M
Sbjct: 57 HGLISMTMMMDAILGL---------------ERIEFERLETM--KVEEV------M---- 89
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRA 586
N + S+ KA+ L V + V GI TR++ L+
Sbjct: 90 ------NRNIPRLRLDDSLMKAVGLI--VNHPFVCVENDDGY-----FAGIFTRREVLKQ 136
Query: 587 FN 588
N
Sbjct: 137 LN 138
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 4e-05
Identities = 34/182 (18%), Positives = 61/182 (33%), Gaps = 52/182 (28%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
+ + V +L+ + V + + + VL + ++ PVLD +L
Sbjct: 12 FQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPMY-----------KL 60
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
HGLI A ++ + E+ + L E K+E+V M
Sbjct: 61 HGLISTAMILDGILGL---------------ERIEFERLEEM--KVEQV------M---- 93
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRA 586
+ S AKA+ + + + V + GILTR+ L+
Sbjct: 94 ------KQDIPVLKLEDSFAKALEMT--IDHPFICAVNEDGY-----FEGILTRRAILKL 140
Query: 587 FN 588
N
Sbjct: 141 LN 142
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330 | Back alignment and structure |
|---|
Score = 44.6 bits (105), Expect = 5e-05
Identities = 35/234 (14%), Positives = 68/234 (29%), Gaps = 47/234 (20%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE------GVVPPSGLA 461
M++ +LI ++ +V + L P+ D G++ +
Sbjct: 32 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQSFVGMLTITDFI 91
Query: 462 NVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE----VREKFSWVELAER--EGKIEE 515
N+ + L L K +E + ++ + S + KI
Sbjct: 92 NILHRYYKSALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHR 151
Query: 516 VAVTSEEMEMYI------------------------------DLHPLTNTTPYTVIESMS 545
+ V E + +L T V +
Sbjct: 152 LPVIDPESGNTLYILTHKRILKFLKLFITEFPKPEFMSKSLEELQIGTYANIAMVRTTTP 211
Query: 546 VAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFPHLERS 599
V A+ +F Q + L VV + G VV I ++ D+ + +L+ S
Sbjct: 212 VYVALGIFVQHRVSALPVV---DEKGR--VVDIYSKFDVINLAAEKTYNNLDVS 260
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 9e-05
Identities = 21/180 (11%), Positives = 56/180 (31%), Gaps = 41/180 (22%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
M + ++T+ + + + + + PV++ G ++
Sbjct: 1 MFVRVMKIA--QNKKIVTVYPTTTIRKALMTMNENKYRRLPVVNAG----------NNKV 48
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
G+I +V + ++ +REK LA + E+ +
Sbjct: 49 VGIITSMDIVDFM--------GGGSKYNLIREKHERNFLAAINEPVREIMEEN------- 93
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
T+ E+ + +A+ F + +V ++ ++T +D+
Sbjct: 94 ---------VITLKENADIDEAIETFLTKNVGGAPIV---NDENQ--LISLITERDVIRA 139
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280 | Back alignment and structure |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 29/190 (15%), Positives = 54/190 (28%), Gaps = 47/190 (24%)
Query: 399 FLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPS 458
+ A + + + I VI + E++ + + PV+ EG
Sbjct: 136 VIRALLDKIDENEVIDDYI--TRDVIVATPGERLKDVARTMVRNGFRRLPVVSEG----- 188
Query: 459 GLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAV 518
L G+I + L W + E+ ++EE+
Sbjct: 189 -------RLVGIITSTDFIKLLGSDWAFNHMQTGNVREITNV-----------RMEEIMK 230
Query: 519 TSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGI 578
T E + K + + L VV + + GI
Sbjct: 231 RD----------------VITAKEGDKLKKIAEIMVTNDIGALPVV---DENLR--IKGI 269
Query: 579 LTRQD-LRAF 587
+T +D L+ F
Sbjct: 270 ITEKDVLKYF 279
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133 | Back alignment and structure |
|---|
Score = 41.4 bits (98), Expect = 1e-04
Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 58/177 (32%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
M V E + K VI+++ K++ I V+ V+D +
Sbjct: 1 MEEEIVKEYM--KTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGN------------KP 46
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
G+I +V A+ K L E K EE M
Sbjct: 47 VGIITERDIVKAIGKGKSL-----------------------ETKAEEF--------M-- 73
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ T+ E + A+ L RQ +RHL VV + G + GI++ +D+
Sbjct: 74 ------TASLITIREDSPITGALALMRQFNIRHLPVV---DDKGN--LKGIISIRDI 119
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.3 bits (101), Expect = 2e-04
Identities = 40/236 (16%), Positives = 67/236 (28%), Gaps = 76/236 (32%)
Query: 390 IILELKGLP----FLDAHPEP---WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT 442
L K F++ ++ + E P ++T IE+ R+
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ--PSMMTRMYIEQ--------RDR 118
Query: 443 THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTE--------- 493
+N V + V R L L++ L E R +
Sbjct: 119 LYNDNQVFAKYNVS----------------RLQPYLKLRQA--LLELRPAKNVLIDGVLG 160
Query: 494 ------------EWEVREKFS----WVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 537
++V+ K W+ L E V +EM L +
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETV------LEMLQKLLYQIDPNW 213
Query: 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGIL----TRQDLRAFNI 589
+ + S K + Q LR LL YE + +L + AFN+
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL-----VLLNVQNAKAWNAFNL 264
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 3e-04
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+P TV+++ V A R+ +RH++VV G +VG+L+ +DL
Sbjct: 78 NSPITVLDTDPVHVAAEKMRRHNIRHVVVV---NKNGE--LVGVLSIRDL 122
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 Length = 159 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 3e-04
Identities = 31/178 (17%), Positives = 55/178 (30%), Gaps = 52/178 (29%)
Query: 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLI 471
TVG+ + V + + + VL T + PVLD LHGLI
Sbjct: 15 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----------YRLHGLI 63
Query: 472 LRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHP 531
++ ++ E+ + +L + +EEV M
Sbjct: 64 GTNMIMNSIFGL---------------ERIEFEKLDQI--TVEEV--------M------ 92
Query: 532 LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQD-LRAFN 588
T + + + K + + + V + GI TR+ L+ N
Sbjct: 93 --LTDIPRLHINDPIMKGFGMV--INNGFVCVENDEQV-----FEGIFTRRVVLKELN 141
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 20/169 (11%), Positives = 37/169 (21%), Gaps = 46/169 (27%)
Query: 419 AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL 478
LS +++ + V +E + GL+ L+
Sbjct: 26 MIKNPPILSKEDRLGSAFKKINEGGIGRIIVANEKIE-------------GLLTTRDLL- 71
Query: 479 ALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPY 538
E + I + P
Sbjct: 72 -----------STVESYCKDSCSQGDLYHISTTPIIDYM----------------TPNPV 104
Query: 539 TVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587
TV + A+ + L VV + VGI+T ++
Sbjct: 105 TVYNTSDEFTAINIMVTRNFGSLPVVDINDK-----PVGIVTEREFLLL 148
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 100.0 | |
| 1ots_A | 465 | Voltage-gated CLC-type chloride channel ERIC; CLC | 100.0 | |
| 4ene_A | 446 | CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem | 100.0 | |
| 3nd0_A | 466 | SLL0855 protein; CLC family CL-/H+ antiporter, CLC | 100.0 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 99.8 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 99.78 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 99.77 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 99.76 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 99.76 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 99.75 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 99.74 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 99.74 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 99.74 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 99.74 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 99.73 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 99.72 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 99.72 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 99.72 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 99.72 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 99.72 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 99.72 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 99.71 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 99.71 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 99.71 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 99.71 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 99.7 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 99.7 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 99.69 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 99.69 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 99.69 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 99.69 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 99.68 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 99.68 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 99.67 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 99.67 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 99.67 | |
| 3org_A | 632 | CMCLC; transporter, transport protein; 3.50A {Cyan | 99.67 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 99.67 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 99.67 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 99.66 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 99.66 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 99.66 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 99.66 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 99.65 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 99.63 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 99.62 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 99.61 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 99.59 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 99.58 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.56 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.55 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.53 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.53 | |
| 1ots_A | 465 | Voltage-gated CLC-type chloride channel ERIC; CLC | 99.52 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 99.51 | |
| 3kh5_A | 280 | Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a | 99.51 | |
| 3ddj_A | 296 | CBS domain-containing protein; structural genomics | 99.5 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.48 | |
| 3nd0_A | 466 | SLL0855 protein; CLC family CL-/H+ antiporter, CLC | 99.47 | |
| 2yzq_A | 282 | Putative uncharacterized protein PH1780; sheet/hel | 99.46 | |
| 4ene_A | 446 | CLC-EC1, H(+)/CL(-) exchange transporter CLCA; mem | 99.44 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.42 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 99.41 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 99.37 | |
| 2qrd_G | 334 | Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, | 99.36 | |
| 2v8q_E | 330 | 5'-AMP-activated protein kinase subunit gamma-1; p | 99.36 | |
| 3t4n_C | 323 | Nuclear protein SNF4; CBS domain, nucleotide bindi | 99.36 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 99.34 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.3 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 99.3 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 99.28 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 99.25 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 99.18 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 99.08 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.83 | |
| 4esy_A | 170 | CBS domain containing membrane protein; structural | 98.62 | |
| 1vr9_A | 213 | CBS domain protein/ACT domain protein; structural | 98.57 | |
| 3ghd_A | 70 | A cystathionine beta-synthase domain protein FUSE | 98.49 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.47 | |
| 3lhh_A | 172 | CBS domain protein; structural genomics, PSI-2, pr | 98.42 | |
| 2d4z_A | 250 | Chloride channel protein; CLC chloride channel cyt | 98.41 | |
| 3lv9_A | 148 | Putative transporter; CBS domain, PSI, MCSG, struc | 98.38 | |
| 3l2b_A | 245 | Probable manganase-dependent inorganic pyrophospha | 98.35 | |
| 3kpb_A | 122 | Uncharacterized protein MJ0100; CBS domain, S-aden | 98.3 | |
| 3oi8_A | 156 | Uncharacterized protein; structural genomics, PSI- | 98.3 | |
| 3k2v_A | 149 | Putative D-arabinose 5-phosphate isomerase; KPSF-l | 98.29 | |
| 2rih_A | 141 | Conserved protein with 2 CBS domains; bateman doma | 98.28 | |
| 2o16_A | 160 | Acetoin utilization protein ACUB, putative; struct | 98.28 | |
| 3gby_A | 128 | Uncharacterized protein CT1051; CBS domain, struct | 98.28 | |
| 2yzi_A | 138 | Hypothetical protein PH0107; sheet/helix/sheet/she | 98.28 | |
| 3nqr_A | 127 | Magnesium and cobalt efflux protein CORC; structur | 98.28 | |
| 3fio_A | 70 | A cystathionine beta-synthase domain protein fused | 98.27 | |
| 3jtf_A | 129 | Magnesium and cobalt efflux protein; CBS domain, C | 98.25 | |
| 2p9m_A | 138 | Hypothetical protein MJ0922; structural genomics, | 98.24 | |
| 3lfr_A | 136 | Putative metal ION transporter; CBS, AMP, PSI, MCS | 98.2 | |
| 3i8n_A | 130 | Uncharacterized protein VP2912; APC64273.1, vibrio | 98.19 | |
| 1pbj_A | 125 | Hypothetical protein; structural genomics, domain, | 98.19 | |
| 3fv6_A | 159 | YQZB protein; CBS domain dimer, metabolism regulat | 98.19 | |
| 3lqn_A | 150 | CBS domain protein; csgid, structural genomics, un | 98.18 | |
| 3hf7_A | 130 | Uncharacterized CBS-domain protein; CSB-domain PAI | 98.18 | |
| 2ef7_A | 133 | Hypothetical protein ST2348; CBS-domain, structura | 98.16 | |
| 3k6e_A | 156 | CBS domain protein; streptococcus pneumoniae TIGR4 | 98.15 | |
| 3ctu_A | 156 | CBS domain protein; structural genomics, PSI-2, pr | 98.14 | |
| 4gqw_A | 152 | CBS domain-containing protein CBSX1, chloroplasti; | 98.13 | |
| 1y5h_A | 133 | Hypothetical protein RV2626C; CBS domain, unknown | 98.13 | |
| 2emq_A | 157 | Hypothetical conserved protein; CBS domains, NPPSF | 98.13 | |
| 1yav_A | 159 | Hypothetical protein BSU14130; cystathionine beta | 98.12 | |
| 3fhm_A | 165 | Uncharacterized protein ATU1752; CBS domain, proka | 98.12 | |
| 1pvm_A | 184 | Conserved hypothetical protein TA0289; structural | 98.11 | |
| 3ocm_A | 173 | Putative membrane protein; structural genomics, PS | 98.1 | |
| 3oco_A | 153 | Hemolysin-like protein containing CBS domains; str | 98.09 | |
| 2nyc_A | 144 | Nuclear protein SNF4; bateman2 domain, AMP kinase, | 98.07 | |
| 1o50_A | 157 | CBS domain-containing predicted protein TM0935; CB | 98.07 | |
| 2pfi_A | 164 | Chloride channel protein CLC-Ka; cystathionine bet | 98.05 | |
| 2j9l_A | 185 | Chloride channel protein 5; ION channel, ION trans | 98.02 | |
| 3sl7_A | 180 | CBS domain-containing protein CBSX2; CBS-PAIR prot | 97.99 | |
| 3kxr_A | 205 | Magnesium transporter, putative; cystathionine bet | 97.96 | |
| 2uv4_A | 152 | 5'-AMP-activated protein kinase subunit gamma-1; t | 97.94 | |
| 2rc3_A | 135 | CBS domain; in SITU proteolysis, BR, structural ge | 97.94 | |
| 3pc3_A | 527 | CG1753, isoform A; CBS, synthase, PLP, heme, amino | 97.89 | |
| 4fry_A | 157 | Putative signal-transduction protein with CBS DOM; | 97.82 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 97.6 | |
| 2oux_A | 286 | Magnesium transporter; 10001B, structural genomics | 97.55 | |
| 2yvy_A | 278 | MGTE, Mg2+ transporter MGTE; membrane protein, tra | 97.55 | |
| 2zy9_A | 473 | Mg2+ transporter MGTE; membrane protien, metal tra | 97.45 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 97.44 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 97.26 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 97.01 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 96.87 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 96.69 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 96.65 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 96.52 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 96.46 |
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-75 Score=657.56 Aligned_cols=510 Identities=24% Similarity=0.361 Sum_probs=373.2
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhh-ccCChhhhHHHHHHhHhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLR-YFNNDRDRRDLITCGSSSGVCAA 80 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~~r~l~~~g~aagiaa~ 80 (605)
+++|+++.|++++++++++|+|+|||||++|+||++|++++| . .+++ .++++.+||.+++||+|||+||+
T Consensus 100 ~~~~~~~~K~~~~~l~igsG~s~GrEGP~vqiGa~ig~~~~~----~-----~~f~~~~~~~~~~r~ll~aGaaAG~aaa 170 (632)
T 3org_A 100 LELRVLFAKALGLICAIGGGLPVGWEGPNVHIACIIAHQFYR----L-----GVFKELCTDRALRLQTLAAACAVGLASS 170 (632)
T ss_dssp GSHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHTT----S-----HHHHHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCCCccccchHHHHHHHHHHHHhh----h-----hhhccccCCHHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999999999999998876 0 0222 12367889999999999999999
Q ss_pred hccchhHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHHH
Q 007394 81 FRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTL 160 (605)
Q Consensus 81 F~aPl~g~lF~~E~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~il 160 (605)
||||+||++|++|+++++|+.+.+|++++++++++++++.+..... ...+|+. .|+. ..++++.++ ++++
T Consensus 171 F~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~a~~v~~~~~~~~~--~~~~~~~----~~~~---~~~~~~~~l-~~~~ 240 (632)
T 3org_A 171 FGAPLGGVLYSIETIASFYLVQAFWKGVLSALSGAIVYELLYTTPL--VEAFEGT----NFDA---SDVSRTQTL-LYAI 240 (632)
T ss_dssp HTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHHHHHHTTC---------------------------CCCCSCTH-HHHH
T ss_pred hCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhccCcc--ccccccc----cccc---cCCCcHHHH-HHHH
Confidence 9999999999999999999999999999999999888764321000 0011111 1221 235778899 9999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCccc
Q 007394 161 IGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240 (605)
Q Consensus 161 lgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~~ 240 (605)
+|++||++|.+|+++++++.+++ .++...+++++.+++++++++.+ ++|.. .|.
T Consensus 241 lGi~~Gl~g~~f~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l--~~p~~----------------~g~------ 294 (632)
T 3org_A 241 LGALMGVLGALFIRCVRSIYELR--MRHYPGTNRYFLVGVVALFASAL--QYPFR----------------LFA------ 294 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH--HHSSTTCCTHHHHHHHHHHHHHH--TTTC--------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHhhcchhHHHHHHHHHHHHHHH--HHHHH----------------hcC------
Confidence 99999999999999999888762 12222345667777777776643 33432 111
Q ss_pred ccCCCCCchhhHHHhhcCchhHHHhhhcCCCC---CCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHH
Q 007394 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTP---TEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRL 317 (605)
Q Consensus 241 ~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~ 317 (605)
+ ++++.++++|++... +++.+..++++++.|+++|++|+|+|+|||.|+|++++||++|++
T Consensus 295 -------~---------~~~~~i~~l~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~s~g~g~pGGif~P~l~iGA~~G~~ 358 (632)
T 3org_A 295 -------L---------DPRATINDLFKAVPLYQTDHFGWTELILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRL 358 (632)
T ss_dssp ------------------CHHHHHHHHSCC----------CCSSHHHHHHHHHHHHHTTSSSBCBCHHHHHHHHHHHHHH
T ss_pred -------C---------cHHHHHHHHHcCCccccccchhHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHH
Confidence 1 011223334432110 123344567788999999999999999999999999999999999
Q ss_pred HHHHhhcc-c-CCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHhc
Q 007394 318 LGMAMGSY-T-NIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELK 395 (605)
Q Consensus 318 ~g~~~~~~-~-~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy~~~l~~~ 395 (605)
+|.+++.. + ..+|+.||++||+|+++|++|+|++++ |++||||++++++|+|+++++||++++.+++++|+.+++.+
T Consensus 359 ~g~~~~~~~p~~~~p~~~a~vGmaa~~~~v~~ap~t~v-i~~E~tg~~~~~lpl~ia~~~a~~v~~~~~~~iY~~~~~~k 437 (632)
T 3org_A 359 YGELMRVVFGNAIVPGSYAVVGAAAFTAGVTRALSCAV-IIFEVTGQIRHLVPVLISVLLAVIVGNAFNRSLYETLVLMK 437 (632)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHHHHHHHHHSCCTTHHH-HHHHHTCCCSCSHHHHHHHHHHHHHHHHHCCCHHHHHHHHT
T ss_pred HHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhCChhHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Confidence 99987652 2 268999999999999999999999975 89999999999999999999999999999889999999999
Q ss_pred CCCCCCCCCCccccccccccccccCCCeeEEcCcccHHHHHHHHh-cCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHH
Q 007394 396 GLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLR-NTTHNGFPVLDEGVVPPSGLANVATELHGLILRA 474 (605)
Q Consensus 396 g~~~l~~~~~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~-~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~ 474 (605)
++|++++...+..++++|+|+|+++.++++++++++++|+.+.|+ +++++.+||+|++ ++++|+|+++
T Consensus 438 ~lp~l~~~~~~~~~~~~V~diM~p~~~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd~~-----------~~lvGiVt~~ 506 (632)
T 3org_A 438 HLPYMPILRRDRSPEMTAREIMHPIEGEPHLFPDSEPQHIKGILEKFPNRLVFPVIDAN-----------GYLLGAISRK 506 (632)
T ss_dssp TCCEEEEECTTCCTTSBHHHHCBCTTTSCCBCSSSCHHHHHHHHHHSTTCCEECBBCTT-----------CBBCCEESHH
T ss_pred CCCccccccccccccCcHHHHhhcCCCceEecCCCcHHHHHHHHHhcCCcceEEEEecC-----------CeEEEEEEHH
Confidence 999886554455588999999994449999999999999999999 8999999999987 8999999999
Q ss_pred HHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCc-cccc----cc--Ch---hhhhhhcccccccccCCceecCCC
Q 007394 475 HLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGK-IEEV----AV--TS---EEMEMYIDLHPLTNTTPYTVIESM 544 (605)
Q Consensus 475 dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~--~~---~~~~~~~~v~~im~~~~~~v~~~~ 544 (605)
|+.+.+.++....+.. .+..+........++.+.... .++. .. .+ ...+...+++++|+++|.++++|+
T Consensus 507 DL~~~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~v~~iMt~~pitV~~~~ 585 (632)
T 3org_A 507 EIVDRLQHVLEDVPEP-IAGHRTLVLLDAADLSENIEGLVDETPSGEHSSKGKRTATVLEPTSSLVVPCDVSPIVVTSYS 585 (632)
T ss_dssp HHTTTTTTC--------------------------------------------------------CCSCCCCCCEEETTC
T ss_pred HHHHHHHHHhhhcccc-cccccceeccCHHHHHhhcccCCCCCcccchhhhcccceEeeccccccchhhcCCCceecCCC
Confidence 9987655431111000 000000000111111110000 0000 00 00 000111248999999999999999
Q ss_pred CHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 545 SVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 545 sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
++.|+.++|.+++.+++||+ | +|+++||||++|+++.+.++
T Consensus 586 ~l~ea~~~M~~~~i~~lpVv-e-----~G~lvGIVT~~Dll~~~~~~ 626 (632)
T 3org_A 586 LVRQLHFLFVMLMPSMIYVT-E-----RGKLVGIVEREDVAYGYSNS 626 (632)
T ss_dssp BHHHHHHHHHHTCCSEEEEE-E-----TTEEEEEEEGGGTEECCCC-
T ss_pred cHHHHHHHHHhcCCCEEEEE-E-----CCEEEEEEehhhHHHHHhhh
Confidence 99999999999999999999 5 59999999999999876653
|
| >1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-57 Score=489.20 Aligned_cols=324 Identities=25% Similarity=0.455 Sum_probs=277.5
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
.++|+.+.|++++++++++|+|+|||||++|+|+++|++++| +++. +++++||++++||+|||+|++|
T Consensus 123 ~~~r~~~~k~~~~~lti~sG~s~GrEGP~vqiGa~ig~~l~~-----------~~~l-~~~~~~r~li~~GaaAGlaAaF 190 (465)
T 1ots_A 123 RWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL-KGDEARHTLLATGAAAGLAAAF 190 (465)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC-CSHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHHHH-----------Hhcc-CCHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999998 4442 2678899999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhhhh--HHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRSAL--LWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVT 159 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~i 159 (605)
|||++|++|++|+++++|+.+. ++++++++++++.+.+.+ +|+++ .|+++. .+.+++.++++++
T Consensus 191 ~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~G~~~--~f~~~~-~~~~~~~~l~~~i 256 (465)
T 1ots_A 191 NAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVGK-LSDAPLNTLWLYL 256 (465)
T ss_dssp TCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH-----------SCSCC--SSCCCC-CCCCCGGGHHHHH
T ss_pred CCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH-----------cCCCc--eeecCC-CCCCCHHHHHHHH
Confidence 9999999999999998888665 889998888888888753 45555 344442 3455778999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcc
Q 007394 160 LIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFK 239 (605)
Q Consensus 160 llgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~ 239 (605)
++|++||++|.+|++++.+.+++++++++.+.+++++.+.+++++++++++++|+. .|.
T Consensus 257 llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~i~gl~~g~l~~~~P~~----------------lG~----- 315 (465)
T 1ots_A 257 ILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT----------------SGG----- 315 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG----------------SSC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHHHHHHHHHHHHhHhh----------------cCC-----
Confidence 99999999999999999999999988754344556677888899999999988876 221
Q ss_pred cccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 240 ~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
+|+ .++.+++. ++++..++.+++.|+++|++|+|+|+|||+|+|++++||++|+++|
T Consensus 316 -------G~~------------~i~~~~~~----~~~~~~l~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g 372 (465)
T 1ots_A 316 -------GFN------------LIPIATAG----NFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG 372 (465)
T ss_dssp -------STT------------HHHHHHHT----CSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHH
T ss_pred -------hHH------------HHHHHHcC----CchHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHHHHHHHHHHH
Confidence 232 34444432 4566778888999999999999999999999999999999999999
Q ss_pred HHhhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHhc
Q 007394 320 MAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILELK 395 (605)
Q Consensus 320 ~~~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~~ 395 (605)
.+++.. ...+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++||.+++.+ ++++|+.+++++
T Consensus 373 ~~~~~~~p~~~~~~~~~alvGmaa~~a~v~raPlt~ivlv~Eltg~~~~llpl~ia~~iA~~v~~~~~~~~iY~~~l~~~ 452 (465)
T 1ots_A 373 MVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILART 452 (465)
T ss_dssp HHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 987642 2478999999999999999999999999999999999999999999999999999998 689999998764
|
| >4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-57 Score=484.03 Aligned_cols=321 Identities=24% Similarity=0.440 Sum_probs=271.1
Q ss_pred ccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhH-HHHHHhHhhhhhhhh
Q 007394 3 GATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRR-DLITCGSSSGVCAAF 81 (605)
Q Consensus 3 ~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r-~l~~~g~aagiaa~F 81 (605)
.+|+.+.|++++++++++|+|+|||||++|+|+++|++++| ++|. +++++| ++++||+|||+|++|
T Consensus 109 ~~r~~~~k~~~~~lti~~G~s~GrEGP~vqiGa~ig~~~~~-----------~~~~--~~~~~r~~ll~aGaaAG~aaaF 175 (446)
T 4ene_A 109 WWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL--KGDEARHTLLATGAAAGLAAAF 175 (446)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC--CSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCccCCcchHHHHHHHHHHHHHH-----------HcCC--CHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999998 4443 456665 999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhh--hhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRS--ALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVT 159 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~i 159 (605)
|||++|++|++|++.++++. +.++++++++++++.+.+. ++|+++ .|+++. ...+++.++++++
T Consensus 176 ~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~-----------~~g~~~--~~~~~~-~~~~~~~~l~~~i 241 (446)
T 4ene_A 176 NAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRI-----------FNHEVA--LIDVGK-LSDAPLNTLWLYL 241 (446)
T ss_dssp TCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHHHHHHHHH-----------TTTTCC--SCCCCC-CCCCCGGGHHHHH
T ss_pred CCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHH-----------HcCCCc--eeecCC-CCccCHHHHHHHH
Confidence 99999999999999887765 6788999998888888775 345555 345542 3456788999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcc
Q 007394 160 LIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFK 239 (605)
Q Consensus 160 llgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~ 239 (605)
++|++||++|.+|++++.+.++++++++...++++++.+.+++++++++++++|+. .|.
T Consensus 242 llGi~~Gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~g~l~~~~p~~----------------~G~----- 300 (446)
T 4ene_A 242 ILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT----------------SGG----- 300 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG----------------SSC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHhHhh----------------cCC-----
Confidence 99999999999999999999999988764333444445556777888888888876 221
Q ss_pred cccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 240 ~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
+|+.+ +.+++ +++++..++.+++.|+++|++|+|+|+|||.|+|++++||++|+++|
T Consensus 301 -------G~~~i------------~~~~~----~~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g 357 (446)
T 4ene_A 301 -------GFNLI------------PIATA----GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG 357 (446)
T ss_dssp -------CSTHH------------HHHHT----TCSCHHHHHHHHHHHHHHHHHHHTTTCSSBSHHHHHHHHHHHHHHHH
T ss_pred -------cHHHH------------HHHHc----CCchHHHHHHHHHHHHHHHHHHHccCCCcchhHHHHHHHHHHHHHHH
Confidence 24332 33332 24566778888999999999999999999999999999999999999
Q ss_pred HHhhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHh
Q 007394 320 MAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILEL 394 (605)
Q Consensus 320 ~~~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~ 394 (605)
.+++.. ...+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++||.+++.+ ++++||.++++
T Consensus 358 ~~~~~~~p~~~~~~~~~a~vGmaa~~a~~~~aPlt~~vl~~Eltg~~~~~lpl~ia~~ia~~v~~~~~~~~iY~~~l~r 436 (446)
T 4ene_A 358 MVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILAR 436 (446)
T ss_dssp HHHHHHCGGGTCCHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred HHHHHhCCccccCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHCChhHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 987653 2478999999999999999999999999999999999999999999999999999999 78999998865
|
| >3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-56 Score=483.02 Aligned_cols=319 Identities=22% Similarity=0.409 Sum_probs=273.0
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
.++|+++.|++++++++++|+|+|||||++|+|+++|++++| +++. ++++||.+++||+|||+||+|
T Consensus 119 ~~~~~~~~k~~~~~ltig~G~S~GrEGP~vqiGa~ig~~l~~-----------~~~~--~~~~~r~ll~aGaAAGlaAaF 185 (466)
T 3nd0_A 119 VWQRVLPIKLVGGFLSLGAGMLAGFEGPTIQMGGSIGQMTGG-----------WFKA--TQENQRILIAVGAGAGLATAF 185 (466)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCCTHHHHHHHHHHHHHHHHH-----------HTTC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHH-----------HcCC--ChhHHHHHHHHHHHHHHHHHh
Confidence 347899999999999999999999999999999999999998 4444 678899999999999999999
Q ss_pred ccchhHHHHHHHHhcchh--hhhhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWW--RSALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVT 159 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~i 159 (605)
|||++|++|++|++.++| +.+.++++++++++++.+.+.+ +|+++ .|+++. ...+++.++++++
T Consensus 186 ~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~v~~~~-----------~g~~~--~f~~~~-~~~~~~~~l~~~i 251 (466)
T 3nd0_A 186 NAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVMATIILRMI-----------RGQSA--IISLTE-FKRVPLDSLWMFI 251 (466)
T ss_dssp TCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHHHHHHHHHH-----------TCSSC--SSCCTT-CCCCCGGGHHHHH
T ss_pred CCchHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHH-----------cCCCC--ceecCC-CCCCCHHHHHHHH
Confidence 999999999999998887 4456779999998888888753 45555 355542 3457889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcc
Q 007394 160 LIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFK 239 (605)
Q Consensus 160 llgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~ 239 (605)
++|++||++|.+|++++.+.+++++++++ +++++.+.+++++++++++++|+. .|.
T Consensus 252 llGi~~Gl~g~lf~~~~~~~~~~~~~~~~---~~~~~~~~l~g~~~g~l~~~~p~~----------------~G~----- 307 (466)
T 3nd0_A 252 ILGILFGVMGYTFNRGLFKVLDWFDRLPP---LATKWKGFLLGSIIGILSLFPLPL----------------TDG----- 307 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCH---HHHHHHHHHHHHHHHHHTTSSSSC----------------SSS-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccc---ccHHHHHHHHHHHHHHHHHHHHHH----------------cCC-----
Confidence 99999999999999999999998876532 235566777888889888888876 221
Q ss_pred cccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 240 ~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
+|+ .++.+++ +++++..++.+++.|+++|++|+|+|+|||.|+|++++||++|+++|
T Consensus 308 -------G~~------------~i~~~~~----~~~~~~~L~~~~~~K~~~t~lt~gsG~~GGif~Psl~iGA~~G~~~g 364 (466)
T 3nd0_A 308 -------GDN------------AVLWAFN----SQSHFSTLILVFCGRFLLTLICYGSGAIGGIFAPMLGIASIVSVAMA 364 (466)
T ss_dssp -------SHH------------HHHHHTT----SCCCHHHHHHHHHHHHHHHHHHHHTTCBCCSHHHHHHHHHHHHHHHH
T ss_pred -------cHH------------HHHHHHc----CCccHHHHHHHHHHHHHHHHHHHhCCCCCceehHHHHHHHHHHHHHH
Confidence 233 3444443 24567778889999999999999999999999999999999999999
Q ss_pred HHhhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHh
Q 007394 320 MAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILEL 394 (605)
Q Consensus 320 ~~~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~ 394 (605)
.+++.. ...+|+.|+++||+|++++++|+|+|++++++|+||++++++|+|+++++||.+++.+ ++++||.++++
T Consensus 365 ~~~~~~~p~~~~~~~~~a~vGmaa~~a~v~~aPlt~ivlv~Eltg~~~~~lpl~ia~~iA~~v~~~~~~~~iY~~~l~r 443 (466)
T 3nd0_A 365 RHFHLLFPSQIPEPAVMAIAGMGALVAATVRAPLTAILLTIEMTDNYFVILPLLVTCLVASVVAEALGGKPIYTVLLER 443 (466)
T ss_dssp HHHHHHCTTTCSSTHHHHHHTTSHHHHHHHSCHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHTTSCCCCHHHHHHHH
T ss_pred HHHHHhCCccccCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHCChHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 987653 2578999999999999999999999999999999999999999999999999999999 79999999876
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.7e-20 Score=171.82 Aligned_cols=149 Identities=19% Similarity=0.282 Sum_probs=114.9
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
.+++++|+|+|++ +++++++++++.++.+.|.+++++++||+|++ |+++|+||.+|+++.+......
T Consensus 14 ~l~~~~V~diM~~--~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----------g~lvGiit~~Dll~~~~~~~~~ 80 (170)
T 4esy_A 14 AIRQVPIRDILTS--PVVTVREDDTLDAVAKTMLEHQIGCAPVVDQN-----------GHLVGIITESDFLRGSIPFWIY 80 (170)
T ss_dssp HHHTSBGGGGCCS--CCCCEETTSBHHHHHHHHHHTTCSEEEEECTT-----------SCEEEEEEGGGGGGGTCCTTHH
T ss_pred HHcCCCHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCeEEEEEcCC-----------ccEEEEEEHHHHHHHHhhcccc
Confidence 3567899999999 99999999999999999999999999999988 9999999999997644332111
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
... +............. ........+++++|++++.++++++++.+|+++|.+++++++||+|+
T Consensus 81 ~~~-----~~~~~~~~~~~~~~-----------~~~~~~~~~v~~im~~~~~tv~~~~~l~~a~~~m~~~~~~~lpVvd~ 144 (170)
T 4esy_A 81 EAS-----EILSRAIPAPEVEH-----------LFETGRKLTASAVMTQPVVTAAPEDSVGSIADQMRRHGIHRIPVVQD 144 (170)
T ss_dssp HHH-----HHHTTTSCHHHHHH-----------HHHHHTTCBHHHHCBCCSCCBCTTSBHHHHHHHHHHTTCSEEEEEET
T ss_pred chh-----hhhhhccchhhHHh-----------hhccccccchhhhcccCcccCCcchhHHHHHHHHHHcCCcEEEEEEC
Confidence 000 00000000000000 00112245789999999999999999999999999999999999986
Q ss_pred cccCCCCceEEEEeHHHhHHHHhh
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
|+++|+||++||++++..
T Consensus 145 ------g~lvGivt~~Dil~~l~~ 162 (170)
T 4esy_A 145 ------GVPVGIVTRRDLLKLLLL 162 (170)
T ss_dssp ------TEEEEEEEHHHHTTTSCC
T ss_pred ------CEEEEEEEHHHHHHHHHh
Confidence 899999999999998754
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-18 Score=172.60 Aligned_cols=167 Identities=19% Similarity=0.305 Sum_probs=116.1
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
...+++|+|+|++ +++++.+++++.++.++|.+++++++||||++ ++++++|+|+++|+++++......
T Consensus 9 ~~~~~~v~diMt~--~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~---------~~~~LvGiIt~~dl~~~l~~~~~~ 77 (250)
T 2d4z_A 9 NKYNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---------DTNTLLGSIDRTEVEGLLQRRISA 77 (250)
T ss_dssp CCSSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCT---------TTCBEEEEEEHHHHHHHHHHHHHT
T ss_pred ccCCCChHHhcCC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEecC---------CCCeEEEEEEHHHHHHHHHHhhhh
Confidence 5678899999999 99999999999999999999999999999974 236899999999999887653211
Q ss_pred hhcc-------------cchh-H---HHhhhcchhHhh------------------------------------------
Q 007394 487 QEKR-------------RTEE-W---EVREKFSWVELA------------------------------------------ 507 (605)
Q Consensus 487 ~~~~-------------~~~~-~---~~~~~~~~~~~~------------------------------------------ 507 (605)
..+. ..+. . .....+...+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 157 (250)
T 2d4z_A 78 YRRQPAAAAEADEEGRNGETGASFTGEAESSFAYIDQEDAEGQQREGLEAVKVQTEDPRPPSPVPAEEPTQTSGIYQKKQ 157 (250)
T ss_dssp TSSSCCCCCCBCCC------------------------------------------------------------------
T ss_pred hhhhhhhhhcccccccccccccccccCCcceeeeccccccccccccCccccCCcccCCcccccccccccccccccccccc
Confidence 1000 0000 0 000000000000
Q ss_pred -h--hcCcccccccCh--------hhhhhhccccc-ccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCce
Q 007394 508 -E--REGKIEEVAVTS--------EEMEMYIDLHP-LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPV 575 (605)
Q Consensus 508 -~--~~~~~~~~~~~~--------~~~~~~~~v~~-im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~l 575 (605)
. ......+..... ...+..+++++ +|++.|+++.+++++.+++++|++.|++++||+++ |++
T Consensus 158 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~Vdl~~~~md~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~~------GrL 231 (250)
T 2d4z_A 158 KGTGQVASRFEEMLTLEEIYRWEQREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM------GKL 231 (250)
T ss_dssp ---------CCSCCBHHHHHHHHHHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET------TEE
T ss_pred ccccccCcccccccChhhhhhHHHHhcCceeccccccccCCCeEECCCCcHHHHHHHHHHhCCeEEEEEEC------CEE
Confidence 0 000001111111 12334455564 79999999999999999999999999999999986 999
Q ss_pred EEEEeHHHhHHHHhh
Q 007394 576 VGILTRQDLRAFNIL 590 (605)
Q Consensus 576 vGiITr~Dll~~~~~ 590 (605)
+||||++||++++..
T Consensus 232 VGIVTrkDl~kai~~ 246 (250)
T 2d4z_A 232 VGVVALAEIQAAIEG 246 (250)
T ss_dssp EEEEEHHHHHHHHHC
T ss_pred EEEEEHHHHHHHHHH
Confidence 999999999998763
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-18 Score=159.52 Aligned_cols=130 Identities=15% Similarity=0.114 Sum_probs=110.0
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+++++|+|+.+++++++++|+.+|++.|.+++++++||+|++ ++++|+++.+|+++.+.......
T Consensus 15 ~~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~~-----------~~lvGiit~~Di~~~~~~~~~~~--- 80 (156)
T 3k6e_A 15 GQEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTDE-----------KQFVGTIGLRDIMAYQMEHDLSQ--- 80 (156)
T ss_dssp TTGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC------------CBEEEEEEHHHHHHHHHHHTCCH---
T ss_pred ccHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEecchhhhhhhccccc---
Confidence 4688999988799999999999999999999999999999987 89999999999987655422111
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
. .....+++++|++++.++++++++.+++++|.+++ .+||||+
T Consensus 81 -------------~------------------~~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~--~lpVVd~---- 123 (156)
T 3k6e_A 81 -------------E------------------IMADTDIVHMTKTDVAVVSPDFTITEVLHKLVDES--FLPVVDA---- 123 (156)
T ss_dssp -------------H------------------HHTTSBGGGTCBCSCCCBCTTCCHHHHHHHTTTSS--EEEEECT----
T ss_pred -------------c------------------cccccCHHHhhcCCceecccccHHHHHHHHHHHcC--CeEEEec----
Confidence 0 01125689999999999999999999999998765 4999998
Q ss_pred CCCceEEEEeHHHhHHHHhhhh
Q 007394 571 GVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~~~ 592 (605)
+|+++|+||++|+++++....
T Consensus 124 -~g~l~GiiT~~Dil~~~~~~~ 144 (156)
T 3k6e_A 124 -EGIFQGIITRKSILKAVNALL 144 (156)
T ss_dssp -TSBEEEEEEHHHHHHHHHHHS
T ss_pred -CCEEEEEEEHHHHHHHHHHHh
Confidence 899999999999999987644
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-18 Score=154.08 Aligned_cols=127 Identities=13% Similarity=0.152 Sum_probs=107.2
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecC-CCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE-GVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~-~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
+++|+|+|+++.+++++++++++.++++.|.+++++.+||+|+ + ++++|+++.+|+++.+.+....
T Consensus 1 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~~~-----------~~lvGivt~~dl~~~~~~~~~~-- 67 (130)
T 3hf7_A 1 KVSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRDSL-----------DDAISMLRVREAYRLMTEKKEF-- 67 (130)
T ss_dssp CCBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESSSG-----------GGEEEEEEHHHHHHHHTSSSCC--
T ss_pred CcCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcCCC-----------CcEEEEEEHHHHHHHHhccCcc--
Confidence 3689999976447899999999999999999999999999975 4 7999999999998765432100
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
...+++++| +++.++++++++.+++++|.+++.+.+||+|+
T Consensus 68 ------------------------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~-- 108 (130)
T 3hf7_A 68 ------------------------------------TKEIMLRAA-DEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-- 108 (130)
T ss_dssp ------------------------------------CHHHHHHHS-BCCCEEETTCBHHHHHHHHHHHCCCEEEEECT--
T ss_pred ------------------------------------chhhHHHhc-cCCeEeCCCCcHHHHHHHHHhcCCeEEEEEcC--
Confidence 012356777 67889999999999999999999999999998
Q ss_pred cCCCCceEEEEeHHHhHHHHhhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++++..+
T Consensus 109 ---~g~lvGiit~~Dil~~l~g~ 128 (130)
T 3hf7_A 109 ---YGDIQGLVTVEDILEEIVGD 128 (130)
T ss_dssp ---TSCEEEEEEHHHHHHHHHC-
T ss_pred ---CCCEEEEeeHHHHHHHHhCC
Confidence 79999999999999988753
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.6e-18 Score=152.93 Aligned_cols=127 Identities=17% Similarity=0.224 Sum_probs=106.0
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++.+|+|+|+++.+++++++++++.++.+.|.+++++.+||+|++. ++++|+|+.+|+++.+.+..
T Consensus 3 l~~~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~----------~~~~Givt~~dl~~~~~~~~--- 69 (130)
T 3i8n_A 3 AQDVPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSEQK----------DNIIGFVHRLELFKMQQSGS--- 69 (130)
T ss_dssp ----CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESSST----------TCEEEECCHHHHHHHHHTTT---
T ss_pred cCcCCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC----------CcEEEEEEHHHHHHHHhcCC---
Confidence 56789999999755788999999999999999999999999998631 69999999999987654311
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...+++++| +++.++++++++.++++.|.+++.+++||+|+
T Consensus 70 -------------------------------------~~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~- 110 (130)
T 3i8n_A 70 -------------------------------------GQKQLGAVM-RPIQVVLNNTALPKVFDQMMTHRLQLALVVDE- 110 (130)
T ss_dssp -------------------------------------TTSBHHHHS-EECCEEETTSCHHHHHHHHHHHTCCEEEEECT-
T ss_pred -------------------------------------CcCCHHHHh-cCCcCcCCCCcHHHHHHHHHHcCCeEEEEEcC-
Confidence 013467788 45789999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhHHHHhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|+++++..
T Consensus 111 ----~g~~vGivt~~dil~~l~g 129 (130)
T 3i8n_A 111 ----YGTVLGLVTLEDIFEHLVG 129 (130)
T ss_dssp ----TSCEEEEEEHHHHHHHHHT
T ss_pred ----CCCEEEEEEHHHHHHHHcC
Confidence 7999999999999998753
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=99.75 E-value=8.6e-18 Score=153.04 Aligned_cols=128 Identities=15% Similarity=0.232 Sum_probs=112.4
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
.+.+.+|+|+|+++.+++++++++++.++++.|.+++++.+||+|++. ++++|+|+.+|+.+.+.+..
T Consensus 19 ~l~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~----------~~lvGivt~~dl~~~~~~~~-- 86 (148)
T 3lv9_A 19 EFEEKKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRKNK----------DDILGFVHIRDLYNQKINEN-- 86 (148)
T ss_dssp GGGTCBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESSST----------TSEEEEEEHHHHHHHHHHHS--
T ss_pred ccCCCCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCCC----------CcEEEEEEHHHHHHHHhcCC--
Confidence 367889999999766789999999999999999999999999998741 58999999999987543310
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
..+++++| +++.++++++++.++++.|.+++.+++||+|+
T Consensus 87 ---------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~ 126 (148)
T 3lv9_A 87 ---------------------------------------KIELEEIL-RDIIYISENLTIDKALERIRKEKLQLAIVVDE 126 (148)
T ss_dssp ---------------------------------------CCCGGGTC-BCCEEEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred ---------------------------------------CccHHHhc-CCCeEECCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 13588899 88999999999999999999999999999998
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhh
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++++..+
T Consensus 127 -----~g~~~Giit~~dil~~l~~~ 146 (148)
T 3lv9_A 127 -----YGGTSGVVTIEDILEEIVGE 146 (148)
T ss_dssp -----TSSEEEEEEHHHHHHHHHHT
T ss_pred -----CCCEEEEEEHHHHHHHHhCc
Confidence 79999999999999988764
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-18 Score=147.17 Aligned_cols=120 Identities=21% Similarity=0.269 Sum_probs=107.6
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+++++|.+ ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+.+..
T Consensus 1 ~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~G~vt~~dl~~~~~~~~------ 61 (122)
T 3kpb_A 1 TLVKDILSK--PPITAHSNISIMEAAKILIKHNINHLPIVDEH-----------GKLVGIITSWDIAKALAQNK------ 61 (122)
T ss_dssp CBHHHHCCS--CCCCEETTSBHHHHHHHHHHHTCSCEEEECTT-----------SBEEEEECHHHHHHHHHTTC------
T ss_pred CchHHhhCC--CCEEeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CCEEEEEEHHHHHHHHHhcc------
Confidence 368999999 89999999999999999999999999999987 89999999999987654311
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
.+++++|.+++.++++++++.++++.|.+++.+++||+|+
T Consensus 62 ------------------------------------~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---- 101 (122)
T 3kpb_A 62 ------------------------------------KTIEEIMTRNVITAHEDEPVDHVAIKMSKYNISGVPVVDD---- 101 (122)
T ss_dssp ------------------------------------CBGGGTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred ------------------------------------cCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCeEEEECC----
Confidence 2478889999999999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHhh
Q 007394 571 GVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|+++++.+
T Consensus 102 -~g~~~Givt~~dl~~~l~~ 120 (122)
T 3kpb_A 102 -YRRVVGIVTSEDISRLFGG 120 (122)
T ss_dssp -TCBEEEEEEHHHHHHHHC-
T ss_pred -CCCEEEEEeHHHHHHHhhc
Confidence 7999999999999998764
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.1e-18 Score=151.50 Aligned_cols=125 Identities=17% Similarity=0.268 Sum_probs=105.6
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
.+.+|+|+|+++.+++++++++++.++.+.|.+++++.+||+|++ +++++|+|+.+|+++.+.+
T Consensus 3 ~~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~----------~~~~~Givt~~dl~~~~~~------ 66 (129)
T 3jtf_A 3 AERTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYEDD----------RDNIIGILLAKDLLRYMLE------ 66 (129)
T ss_dssp -CCBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESSS----------TTCEEEEEEGGGGGGGGTC------
T ss_pred CCCCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcCC----------CCcEEEEEEHHHHHhHhcc------
Confidence 467899999954488999999999999999999999999999872 1699999999999653211
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
...+++++|. ++.++++++++.+++++|.+++.+.+||+|+
T Consensus 67 ------------------------------------~~~~v~~~m~-~~~~v~~~~~l~~~~~~m~~~~~~~~pVvd~-- 107 (129)
T 3jtf_A 67 ------------------------------------PALDIRSLVR-PAVFIPEVKRLNVLLREFRASRNHLAIVIDE-- 107 (129)
T ss_dssp ------------------------------------TTSCGGGGCB-CCCEEETTCBHHHHHHHHHTSSCCEEEEECC--
T ss_pred ------------------------------------CCcCHHHHhC-CCeEeCCCCcHHHHHHHHHhcCCeEEEEEeC--
Confidence 0135778885 4889999999999999999999999999998
Q ss_pred cCCCCceEEEEeHHHhHHHHhhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++++..+
T Consensus 108 ---~g~~~Giit~~Dil~~l~ge 127 (129)
T 3jtf_A 108 ---HGGISGLVTMEDVLEQIVGD 127 (129)
T ss_dssp ----CCEEEEEEHHHHHHHHHHT
T ss_pred ---CCCEEEEEEHHHHHHHHhCC
Confidence 79999999999999988764
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=2.1e-17 Score=147.32 Aligned_cols=128 Identities=23% Similarity=0.299 Sum_probs=111.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++.+++++|.+ ++.++++++++.++.+.|.+++++.+||+| + ++++|+++.+|+.+.+.+..
T Consensus 1 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----------~~~~Givt~~dl~~~~~~~~--- 63 (133)
T 2ef7_A 1 MEEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVD-G-----------NKPVGIITERDIVKAIGKGK--- 63 (133)
T ss_dssp CCCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHHTTC---
T ss_pred CCcccHHHhccC--CCEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----------CEEEEEEcHHHHHHHHhcCC---
Confidence 356899999998 899999999999999999999999999999 6 89999999999977654311
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
....+++++|++++.++++++++.++++.|.+++.+++||+|+
T Consensus 64 ------------------------------------~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~- 106 (133)
T 2ef7_A 64 ------------------------------------SLETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD- 106 (133)
T ss_dssp ------------------------------------CTTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-
T ss_pred ------------------------------------CcccCHHHHcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEECC-
Confidence 0113578899999999999999999999999999999999997
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
+|+++|+||++|+++.+.++..
T Consensus 107 ----~g~~~Giit~~dll~~~~~~~~ 128 (133)
T 2ef7_A 107 ----KGNLKGIISIRDITRAIDDMFE 128 (133)
T ss_dssp ----TSCEEEEEEHHHHHHHHHHHC-
T ss_pred ----CCeEEEEEEHHHHHHHHHHHHH
Confidence 7999999999999998876543
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-18 Score=153.85 Aligned_cols=130 Identities=18% Similarity=0.240 Sum_probs=105.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
+.+|+++|+++.+++++++++++.++++.|.+++++.+||+|++. ++++|+|+.+|+++.+.+..
T Consensus 2 ~~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~----------~~~vGivt~~dl~~~~~~~~----- 66 (136)
T 3lfr_A 2 DLQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGESH----------DDVLGVLLAKDLLPLILKAD----- 66 (136)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST----------TCEEEEEEGGGGGGGGGSSS-----
T ss_pred CCChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC----------CcEEEEEEHHHHHHHHHhcc-----
Confidence 578999999544789999999999999999999999999998741 58999999999965432100
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
....+++++|.+ +.++++++++.+++++|.+++.+++||+|+
T Consensus 67 ----------------------------------~~~~~v~~~m~~-~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~--- 108 (136)
T 3lfr_A 67 ----------------------------------GDSDDVKKLLRP-ATFVPESKRLNVLLREFRANHNHMAIVIDE--- 108 (136)
T ss_dssp ----------------------------------GGGCCGGGTCBC-CCEEETTCBHHHHHHHHHHHTCCEEEEECT---
T ss_pred ----------------------------------CCCcCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---
Confidence 012457888965 889999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHhhhhCC
Q 007394 570 AGVSPVVGILTRQDLRAFNILTAFP 594 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~~~~~~ 594 (605)
+|+++|+||++|+++.+..+...
T Consensus 109 --~g~lvGiit~~Dil~~l~~~~~d 131 (136)
T 3lfr_A 109 --YGGVAGLVTIEDVLEQIVGDIED 131 (136)
T ss_dssp --TSCEEEEEEHHHHHTTC------
T ss_pred --CCCEEEEEEHHHHHHHHhCCCcC
Confidence 79999999999999988765443
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-17 Score=154.13 Aligned_cols=130 Identities=20% Similarity=0.245 Sum_probs=109.6
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
.+.+.+|+|+|+++.+++++++++++.++++.|.+++++.+||+|++. ++++|+|+.+|+++.+.+..
T Consensus 38 ~l~~~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~~~----------~~lvGivt~~dl~~~~~~~~-- 105 (172)
T 3lhh_A 38 RLDERTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRNNV----------DDMVGIISAKQLLSESIAGE-- 105 (172)
T ss_dssp -----CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESSST----------TSEEEEEEHHHHHHHHHTTC--
T ss_pred ccCCCCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeCCC----------CeEEEEEEHHHHHHHHhhcC--
Confidence 366789999999433889999999999999999999999999998731 58999999999987643210
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
..+++++| +++.++++++++.+++++|.+++.+.+||+|+
T Consensus 106 ---------------------------------------~~~v~~im-~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~ 145 (172)
T 3lhh_A 106 ---------------------------------------RLELVDLV-KNCNFVPNSLSGMELLEHFRTTGSQMVFVVDE 145 (172)
T ss_dssp ---------------------------------------CCCGGGGC-BCCEEEETTCCHHHHHHHHHHHTCSEEEEECT
T ss_pred ---------------------------------------cccHHHHh-cCCeEeCCCCCHHHHHHHHHHcCCeEEEEEeC
Confidence 13588999 99999999999999999999999999999998
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
+|+++|+||++|+++++..+..
T Consensus 146 -----~g~lvGiit~~Dil~~l~~~~~ 167 (172)
T 3lhh_A 146 -----YGDLKGLVTLQDMMDALTGEFF 167 (172)
T ss_dssp -----TSCEEEEEEHHHHHHHHHTTCC
T ss_pred -----CCCEEEEeeHHHHHHHHhCCCc
Confidence 7999999999999999886544
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.3e-17 Score=152.85 Aligned_cols=131 Identities=14% Similarity=0.154 Sum_probs=110.3
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeee-cCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVL-DEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVv-d~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
+.+.+|+++|+++.+++++++++++.++.+.|.+++++.+||+ |++ +++++|+|+.+|+++.+....
T Consensus 17 l~~~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~~----------~~~lvGivt~~dl~~~~~~~~-- 84 (153)
T 3oco_A 17 MNDKVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADND----------KDKIIGYAYNYDIVRQARIDD-- 84 (153)
T ss_dssp HHHCBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETTE----------EEEEEEEEEHHHHHHHHHHHT--
T ss_pred cCCCEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECCC----------CCcEEEEEEHHHHHhHHhcCC--
Confidence 4568999999864478999999999999999999999999999 541 179999999999987654310
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
..+++++| +++.++++++++.+++++|.+++.+++||+|+
T Consensus 85 ---------------------------------------~~~v~~~m-~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~ 124 (153)
T 3oco_A 85 ---------------------------------------KAKISTIM-RDIVSVPENMKVPDVMEEMSAHRVPMAIVIDE 124 (153)
T ss_dssp ---------------------------------------TSBGGGTC-BCCEEEETTSBHHHHHHHHHHTTCSCEEEECT
T ss_pred ---------------------------------------CCcHHHHh-CCCeEECCCCCHHHHHHHHHHcCCcEEEEEeC
Confidence 13588999 89999999999999999999999999999998
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
+|+++|+||++|+++.+..+...+
T Consensus 125 -----~g~~vGivt~~dil~~l~~~~~de 148 (153)
T 3oco_A 125 -----YGGTSGIITDKDVYEELFGNLRDE 148 (153)
T ss_dssp -----TSCEEEEECHHHHHHHHHC-----
T ss_pred -----CCCEEEEeeHHHHHHHHhccCCCc
Confidence 799999999999999988755443
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=146.82 Aligned_cols=123 Identities=17% Similarity=0.258 Sum_probs=107.8
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCc--eEEEeEeHHHHHHHHhhchhhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVAT--ELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~--~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++++|+|.+ ++.++++++++.++++.|.+++++.+||+|++ + +++|+|+.+|+.+.+.+..
T Consensus 4 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~~~Givt~~dl~~~~~~~~--- 67 (141)
T 2rih_A 4 AIRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARD-----------NPKRPVAVVSERDILRAVAQRL--- 67 (141)
T ss_dssp -CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETT-----------EEEEEEEEEEHHHHHHHHHTTC---
T ss_pred ceEHHHHhcC--CCeEeCCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcceeEEEEEHHHHHHHHhcCC---
Confidence 4789999998 99999999999999999999999999999987 7 9999999999987654311
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
....+++++|.+++.+++++ ++.+++++|.+++.+++||+|+
T Consensus 68 ------------------------------------~~~~~v~~~m~~~~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd~- 109 (141)
T 2rih_A 68 ------------------------------------DLDGPAMPIANSPITVLDTD-PVHVAAEKMRRHNIRHVVVVNK- 109 (141)
T ss_dssp ------------------------------------CTTSBSGGGCBCCCEEETTS-BHHHHHHHHHHHTCSEEEEECT-
T ss_pred ------------------------------------CCCCCHHHHcCCCCeEEcCC-CHHHHHHHHHHcCCeEEEEEcC-
Confidence 01145889999999999999 9999999999999999999997
Q ss_pred ccCCCCceEEEEeHHHhHHHHhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|++++...
T Consensus 110 ----~g~~~Giit~~dll~~~~~ 128 (141)
T 2rih_A 110 ----NGELVGVLSIRDLCFERAI 128 (141)
T ss_dssp ----TSCEEEEEEHHHHHSCHHH
T ss_pred ----CCcEEEEEEHHHHHHHHHH
Confidence 7999999999999876553
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.8e-17 Score=151.69 Aligned_cols=139 Identities=15% Similarity=0.111 Sum_probs=116.0
Q ss_pred CCCCccccccccccccccC-CCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 007394 402 AHPEPWMRTLTVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480 (605)
Q Consensus 402 ~~~~~~l~~~~v~diM~~~-~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l 480 (605)
......+..++|+|+|+++ .+++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+.+.+
T Consensus 15 ~~~~~~l~~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~ 83 (165)
T 3fhm_A 15 ENLYFQGMATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDAD-----------GVVLGIFTERDLVKAV 83 (165)
T ss_dssp -CCCCSSSSCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHH
T ss_pred chhhHhhhhcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHH
Confidence 3445667889999999952 268999999999999999999999999999987 8999999999998765
Q ss_pred hhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcE
Q 007394 481 KKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRH 560 (605)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~ 560 (605)
..... .....+++++|.+++.++.+++++.+++++|.+++.++
T Consensus 84 ~~~~~-------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~ 126 (165)
T 3fhm_A 84 AGQGA-------------------------------------ASLQQSVSVAMTKNVVRCQHNSTTDQLMEIMTGGRFRH 126 (165)
T ss_dssp HHHGG-------------------------------------GGGTSBGGGTSBSSCCCBCTTCBHHHHHHHHHHHTCSE
T ss_pred HhcCC-------------------------------------ccccCCHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCE
Confidence 54210 00124688999999999999999999999999999999
Q ss_pred EEEccccccCCCCceEEEEeHHHhHHHHhhhhCC
Q 007394 561 LLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFP 594 (605)
Q Consensus 561 lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~ 594 (605)
+||+|+ |+++|+||++|+++++.++...
T Consensus 127 lpVvd~------g~~~Giit~~dil~~~~~~~~~ 154 (165)
T 3fhm_A 127 VPVEEN------GRLAGIISIGDVVKARIGEIEA 154 (165)
T ss_dssp EEEEET------TEEEEEEEHHHHHHHTTCC---
T ss_pred EEEEEC------CEEEEEEEHHHHHHHHHHHHHH
Confidence 999986 8999999999999988765443
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-17 Score=147.68 Aligned_cols=124 Identities=12% Similarity=0.053 Sum_probs=108.7
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
.+++++++|.+ ++.++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+.+.+.+..
T Consensus 3 ~s~~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------------~~~~Givt~~dl~~~~~~~~---- 64 (128)
T 3gby_A 3 ASVTFSYLAET--DYPVFTLGGSTADAARRLAASGCACAPVLDG------------ERYLGMVHLSRLLEGRKGWP---- 64 (128)
T ss_dssp TTCBGGGGCBC--CSCCEETTSBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHTTCSSSC----
T ss_pred cceEHHHhhcC--CcceECCCCCHHHHHHHHHHCCCcEEEEEEC------------CEEEEEEEHHHHHHHHhhCC----
Confidence 35789999999 8999999999999999999999999999987 69999999999965322110
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
....+++++|++++.++++++++.++++.|.+++.+++||+|+
T Consensus 65 -----------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-- 107 (128)
T 3gby_A 65 -----------------------------------TVKEKLGEELLETVRSYRPGEQLFDNLISVAAAKCSVVPLADE-- 107 (128)
T ss_dssp -----------------------------------CTTCBCCGGGCBCCCCBCTTSBGGGSHHHHHHCSSSEEEEECT--
T ss_pred -----------------------------------cccCcHHHHccCCCcEECCCCCHHHHHHHHHhCCCcEEEEECC--
Confidence 0113588999999999999999999999999999999999998
Q ss_pred cCCCCceEEEEeHHHhHHHHhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|+++++.+
T Consensus 108 ---~g~~~Giit~~dll~~l~~ 126 (128)
T 3gby_A 108 ---DGRYEGVVSRKRILGFLAE 126 (128)
T ss_dssp ---TCBEEEEEEHHHHHHHHHT
T ss_pred ---CCCEEEEEEHHHHHHHHHh
Confidence 7999999999999998765
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.8e-17 Score=149.49 Aligned_cols=132 Identities=14% Similarity=0.129 Sum_probs=113.1
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
.+..++|+|+|++ ++ ++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+.....
T Consensus 13 ~l~~~~v~~im~~--~~-~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~- 77 (159)
T 3fv6_A 13 KLKKLQVKDFQSI--PV-VIHENVSVYDAICTMFLEDVGTLFVVDRD-----------AVLVGVLSRKDLLRASIGQQE- 77 (159)
T ss_dssp HHTTCBGGGSCBC--CC-EEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHTSCSC-
T ss_pred HHhhCCHHHHcCC--CE-EECCCCcHHHHHHHHHHCCCCEEEEEcCC-----------CcEEEEEeHHHHHHHhhccCc-
Confidence 4667899999987 55 89999999999999999999999999987 899999999999876532110
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVV 564 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVV 564 (605)
....+++++|++ ++.++.+++++.+++++|.+++.+++||+
T Consensus 78 -------------------------------------~~~~~v~~~m~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 120 (159)
T 3fv6_A 78 -------------------------------------LTSVPVHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVI 120 (159)
T ss_dssp -------------------------------------TTTCBGGGTSEETTSCCCBCTTSBHHHHHHHHHHHTCSEEEEE
T ss_pred -------------------------------------ccCcCHHHHHcCCCCcEEECCCCCHHHHHHHHHHcCCcEEEEE
Confidence 012458889988 88999999999999999999999999999
Q ss_pred cccccCCCC---ceEEEEeHHHhHHHHhhhhCCC
Q 007394 565 PKYEAAGVS---PVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 565 d~~~~~~~g---~lvGiITr~Dll~~~~~~~~~~ 595 (605)
|+ +| +++|+||++|+++++.+-....
T Consensus 121 d~-----~g~~~~~vGiit~~dil~~l~~~~~~~ 149 (159)
T 3fv6_A 121 KD-----TDKGFEVIGRVTKTNMTKILVSLSENE 149 (159)
T ss_dssp EE-----CSSSEEEEEEEEHHHHHHHHHHHHTTC
T ss_pred eC-----CCcceeEEEEEEHHHHHHHHHHHhhcc
Confidence 98 67 9999999999999988754443
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-18 Score=149.25 Aligned_cols=125 Identities=20% Similarity=0.350 Sum_probs=103.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
+.+|+|+|+++.+++++++++++.++.+.|.+++++.+||+|++. ++++|+++.+|+.+.+.+..
T Consensus 2 ~~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~~----------~~~vGivt~~dl~~~~~~~~----- 66 (127)
T 3nqr_A 2 DQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDK----------DHIEGILMAKDLLPFMRSDA----- 66 (127)
T ss_dssp -CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSST----------TCEEEEEEGGGGGGGGSTTC-----
T ss_pred CcCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcCCC----------CcEEEEEEHHHHHHHHhccC-----
Confidence 578999999622599999999999999999999999999998741 58999999999965432110
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
...+++++|.+ +.++++++++.+++++|.+++.+++||+|+
T Consensus 67 -----------------------------------~~~~v~~~m~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--- 107 (127)
T 3nqr_A 67 -----------------------------------EAFSMDKVLRT-AVVVPESKRVDRMLKEFRSQRYHMAIVIDE--- 107 (127)
T ss_dssp -----------------------------------CCCCHHHHCBC-CCEEETTCBHHHHHHHHHHTTCCEEEEECT---
T ss_pred -----------------------------------CCCCHHHHcCC-CeEECCCCcHHHHHHHHHhcCCeEEEEEeC---
Confidence 11356778844 789999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHhh
Q 007394 570 AGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|+++++..
T Consensus 108 --~g~~~Giit~~dll~~l~g 126 (127)
T 3nqr_A 108 --FGGVSGLVTIEDILELIVG 126 (127)
T ss_dssp --TSCEEEEEEHHHHHHHC--
T ss_pred --CCCEEEEEEHHHHHHHHhC
Confidence 7999999999999987653
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.71 E-value=3.6e-17 Score=153.31 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=111.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+.+.+|+++|+++.+++++++++++.++++.|.+++++.+||+|++. ++++|+|+.+|+++.+.+..
T Consensus 33 l~~~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~----------~~lvGivt~~Dl~~~~~~~~--- 99 (173)
T 3ocm_A 33 LAERSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRGSL----------DEVVGIGRAKDLVADLITEG--- 99 (173)
T ss_dssp HTTSCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESSST----------TSEEEEEEHHHHHHHHHHHS---
T ss_pred cCCCCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeCCC----------CCEEEEEEHHHHHHHHhcCC---
Confidence 56789999998644789999999999999999999999999998631 68999999999987543210
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
..+++ |.+++.++++++++.+++++|.+++.+.+||+|+
T Consensus 100 --------------------------------------~~~v~--~~~~~~~v~~~~~l~~al~~m~~~~~~~~~Vvde- 138 (173)
T 3ocm_A 100 --------------------------------------RVRRN--RLRDPIIVHESIGILRLMDTLKRSRGQLVLVADE- 138 (173)
T ss_dssp --------------------------------------SCCGG--GSBCCCEECGGGCHHHHHHHHHHSTTCCEEEECT-
T ss_pred --------------------------------------cchhH--hcCCCeEECCCCcHHHHHHHHHHcCCeEEEEEeC-
Confidence 12355 4578889999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCCCcC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFPHLE 597 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~~~~ 597 (605)
+|+++|+||++|+++.+..+...+..
T Consensus 139 ----~g~lvGiIT~~Dil~~l~~~i~de~~ 164 (173)
T 3ocm_A 139 ----FGAIEGLVTPIDVFEAIAGEFPDEDE 164 (173)
T ss_dssp ----TCCEEEEECHHHHHHHHHCCCCCTTS
T ss_pred ----CCCEEEEEeHHHHHHHHhCcCCCccc
Confidence 79999999999999999876655543
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=6.1e-17 Score=145.31 Aligned_cols=130 Identities=9% Similarity=0.150 Sum_probs=111.3
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+...+++++|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+.....
T Consensus 4 l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~-- 68 (138)
T 2yzi_A 4 DMKAPIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-----------GNVVGFFTKSDIIRRVIVPGL-- 68 (138)
T ss_dssp CTTSBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHTTTTCC--
T ss_pred hhhhhHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHHHHhcCC--
Confidence 567899999998 89999999999999999999999999999977 899999999999632211000
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
....+++++|++++.++++++++.++++.|.+++.+++ |+|+
T Consensus 69 ------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd~- 110 (138)
T 2yzi_A 69 ------------------------------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHI-LIEE- 110 (138)
T ss_dssp ------------------------------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEE-EEEE-
T ss_pred ------------------------------------cccCCHHHHhhCCCeEECCCCcHHHHHHHHHhcCCCEE-EECC-
Confidence 01245889999999999999999999999999999999 9997
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhCC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAFP 594 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~~ 594 (605)
+|+++|+||++|+++.+.++...
T Consensus 111 ----~g~~~Giit~~dil~~~~~~~~~ 133 (138)
T 2yzi_A 111 ----EGKIVGIFTLSDLLEASRRRLET 133 (138)
T ss_dssp ----TTEEEEEEEHHHHHHHHHCCSCC
T ss_pred ----CCCEEEEEEHHHHHHHHHHHHHh
Confidence 79999999999999988765443
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=147.30 Aligned_cols=127 Identities=19% Similarity=0.302 Sum_probs=109.5
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHH-HHHHhhchh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHL-VLALKKKWF 485 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl-~~~l~~~~~ 485 (605)
.+.+.+++++|++ ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|+ .+.+.....
T Consensus 4 ~l~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~~ 70 (138)
T 2p9m_A 4 TLKNIKVKDVMTK--NVITAKRHEGVVEAFEKMLKYKISSLPVIDDE-----------NKVIGIVTTTDIGYNLIRDKYT 70 (138)
T ss_dssp -CTTCBGGGTSBC--SCCCEETTSBHHHHHHHHHHHTCCEEEEECTT-----------CBEEEEEEHHHHHHHHTTTCCC
T ss_pred ccccCCHHHhhcC--CceEECCCCcHHHHHHHHHHCCCcEEEEECCC-----------CeEEEEEEHHHHHHHHHhhccc
Confidence 4667899999998 89999999999999999999999999999987 899999999999 765432110
Q ss_pred hhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcC-----CcE
Q 007394 486 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVG-----LRH 560 (605)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~-----~~~ 560 (605)
...+++++|++++.++++++++.++++.|.+++ .++
T Consensus 71 ---------------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~~~~ 111 (138)
T 2p9m_A 71 ---------------------------------------LETTIGDVMTKDVITIHEDASILEAIKKMDISGKKEEIINQ 111 (138)
T ss_dssp ---------------------------------------SSCBHHHHSCSSCCCEETTSBHHHHHHHHTCC-----CCCE
T ss_pred ---------------------------------------CCcCHHHHhCCCcEEECCCCCHHHHHHHHHhcCCccccccE
Confidence 113577888899999999999999999999999 999
Q ss_pred EEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 561 LLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 561 lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+||+|+ +|+++|+||++|+++.+.+
T Consensus 112 l~Vvd~-----~g~~~Giit~~dll~~~~~ 136 (138)
T 2p9m_A 112 LPVVDK-----NNKLVGIISDGDIIRTISK 136 (138)
T ss_dssp EEEECT-----TSBEEEEEEHHHHHHHHHH
T ss_pred EEEECC-----CCeEEEEEEHHHHHHHHHh
Confidence 999997 7999999999999998765
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=2e-17 Score=150.75 Aligned_cols=121 Identities=10% Similarity=0.117 Sum_probs=105.3
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++|+|+|.+..+++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+.+...
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~----- 91 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDDD-----------MNIIGIFTDGDLRRVFDTGVD----- 91 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECTT-----------CBEEEEEEHHHHHHHHCSSSC-----
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECCC-----------CcEEEEecHHHHHHHHhcCCC-----
Confidence 5899999875468899999999999999999999999999987 899999999999876543110
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
....+++++|++++.++++++++.+++++|.+++.+++||+|+
T Consensus 92 ---------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---- 134 (149)
T 3k2v_A 92 ---------------------------------MRDASIADVMTRGGIRIRPGTLAVDALNLMQSRHITCVLVADG---- 134 (149)
T ss_dssp ---------------------------------CTTCBHHHHSEESCCEECTTCBHHHHHHHHHHHTCSEEEEEET----
T ss_pred ---------------------------------cccCcHHHHcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEecC----
Confidence 0123578888899999999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHH
Q 007394 571 GVSPVVGILTRQDLRA 586 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~ 586 (605)
+ +++|+||++|+++
T Consensus 135 -~-~~~Giit~~dil~ 148 (149)
T 3k2v_A 135 -D-HLLGVVHMHDLLR 148 (149)
T ss_dssp -T-EEEEEEEHHHHTC
T ss_pred -C-EEEEEEEHHHhhc
Confidence 4 9999999999975
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-17 Score=148.09 Aligned_cols=138 Identities=19% Similarity=0.124 Sum_probs=114.0
Q ss_pred CccccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhch
Q 007394 405 EPWMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 484 (605)
Q Consensus 405 ~~~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~ 484 (605)
...+.+++|+|+|++..+++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+....
T Consensus 9 ~~~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~~-----------~~~~Givt~~dl~~~~~~~~ 77 (150)
T 3lqn_A 9 KDEFQQIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDPM-----------YKLHGLISTAMILDGILGLE 77 (150)
T ss_dssp HHHHHHCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHTBCSS
T ss_pred HHhhhcCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECCC-----------CCEEEEEEHHHHHHHHHhhc
Confidence 3457789999999952268999999999999999999999999999987 89999999999987654311
Q ss_pred hhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEc
Q 007394 485 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 564 (605)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVV 564 (605)
... .......+++++|++++.++++++++.+++++|.+++. +||+
T Consensus 78 ~~~---------------------------------~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~--l~Vv 122 (150)
T 3lqn_A 78 RIE---------------------------------FERLEEMKVEQVMKQDIPVLKLEDSFAKALEMTIDHPF--ICAV 122 (150)
T ss_dssp SBC---------------------------------GGGGGGCBGGGTCBSSCCEEETTCBHHHHHHHHHHCSE--EEEE
T ss_pred ccc---------------------------------hhHHhcCCHHHHhcCCCceeCCCCCHHHHHHHHHhCCE--EEEE
Confidence 000 00012346889999999999999999999999999987 9999
Q ss_pred cccccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 565 PKYEAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 565 d~~~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
|+ +|+++|+||++|+++.+.++..
T Consensus 123 d~-----~g~~~Giit~~dil~~l~~~~~ 146 (150)
T 3lqn_A 123 NE-----DGYFEGILTRRAILKLLNKKVR 146 (150)
T ss_dssp CT-----TCBEEEEEEHHHHHHHHHHHC-
T ss_pred CC-----CCcEEEEEEHHHHHHHHHHHhH
Confidence 98 7999999999999999887543
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-17 Score=147.60 Aligned_cols=138 Identities=20% Similarity=0.134 Sum_probs=111.6
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
.+.+.+++++|.+..++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+.+.+.....
T Consensus 7 ~l~~~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~~-----------~~~~Givt~~dl~~~~~~~~~- 74 (157)
T 2emq_A 7 EFMQMTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDTS-----------YKLHGLISMTMMMDAILGLER- 74 (157)
T ss_dssp ---CCBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECTT-----------CCEEEEEEHHHHHHHSBCSSS-
T ss_pred hHhhCcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcCC-----------CCEEEEeeHHHHHHHHhcccc-
Confidence 46678999999853368889999999999999999999999999987 899999999999775432100
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
... ......+++++|++++.++++++++.++++.|.+++. +||+|+
T Consensus 75 --------------~~~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--l~Vvd~ 120 (157)
T 2emq_A 75 --------------IEF------------------ERLETMKVEEVMNRNIPRLRLDDSLMKAVGLIVNHPF--VCVEND 120 (157)
T ss_dssp --------------BCG------------------GGGGTCBGGGTCBCCCCEEETTSBHHHHHHHHHHSSE--EEEECS
T ss_pred --------------cch------------------HHhcCCcHHHHhCCCCceecCCCcHHHHHHHHhhCCE--EEEEcC
Confidence 000 0011246889999999999999999999999999987 999998
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
+|+++|+||++|+++.+.+.....
T Consensus 121 -----~g~~~Giit~~dil~~~~~~~~~~ 144 (157)
T 2emq_A 121 -----DGYFAGIFTRREVLKQLNKQLHRP 144 (157)
T ss_dssp -----SSSEEEEEEHHHHHHHHHHTTCCC
T ss_pred -----CCeEEEEEEHHHHHHHHHHHhhcc
Confidence 799999999999999988765443
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.6e-17 Score=148.30 Aligned_cols=142 Identities=23% Similarity=0.303 Sum_probs=110.6
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
+.++|+|+|+++.+++++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 3 ~~~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~G~vt~~dl~~~~~~~~~--- 68 (152)
T 4gqw_A 3 GVYTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDED-----------WKLVGLVSDYDLLALDSGDST--- 68 (152)
T ss_dssp CCSBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECTT-----------CBEEEEEEHHHHTTCC----C---
T ss_pred ceEEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeCC-----------CeEEEEEEHHHHHHhhcccCc---
Confidence 457899999885568999999999999999999999999999987 899999999999653221100
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
...+... +.. .......+++++|++++.++++++++.+++++|.+++.+++||+|+
T Consensus 69 --------------~~~~~~~----~~~----~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-- 124 (152)
T 4gqw_A 69 --------------WKTFNAV----QKL----LSKTNGKLVGDLMTPAPLVVEEKTNLEDAAKILLETKYRRLPVVDS-- 124 (152)
T ss_dssp --------------CHHHHHH----HTC---------CCBHHHHSEESCCCEESSSBHHHHHHHHHHSSCCEEEEECT--
T ss_pred --------------ccchHHH----HHH----HHHhccccHHHhcCCCceEECCCCcHHHHHHHHHHCCCCEEEEECC--
Confidence 0000000 000 0001124688899999999999999999999999999999999998
Q ss_pred cCCCCceEEEEeHHHhHHHHhhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++.+.+.
T Consensus 125 ---~g~~~Giit~~dil~~~~~~ 144 (152)
T 4gqw_A 125 ---DGKLVGIITRGNVVRAALQI 144 (152)
T ss_dssp ---TSBEEEEEEHHHHHHHHHC-
T ss_pred ---CCcEEEEEEHHHHHHHHHhc
Confidence 79999999999999988763
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.7e-17 Score=141.51 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=105.4
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++++|+|.+ ++.++++++++.++.+.|.+++++.+||+| + ++++|+++.+|+.+.+.+...
T Consensus 1 m~v~~~m~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----------~~~~G~it~~dl~~~~~~~~~----- 61 (125)
T 1pbj_A 1 MRVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVK-E-----------GVRVGIVTTWDVLEAIAEGDD----- 61 (125)
T ss_dssp -CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEE-T-----------TEEEEEEEHHHHHHHHHHTCC-----
T ss_pred CCHHHhcCC--CceEECCCCcHHHHHHHHHHcCCCEEEEEe-C-----------CeeEEEEeHHHHHHHHhcCCc-----
Confidence 478999998 899999999999999999999999999999 6 899999999999875543110
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
....+++++|++++.++++++++.++++.|.+++.+++||+|+
T Consensus 62 ---------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~---- 104 (125)
T 1pbj_A 62 ---------------------------------LAEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED---- 104 (125)
T ss_dssp ---------------------------------TTTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET----
T ss_pred ---------------------------------ccccCHHHHcCCCCeEECCCCCHHHHHHHHHhcCCcEEEEEEC----
Confidence 0113577888889999999999999999999999999999986
Q ss_pred CCCceEEEEeHHHhHHHHhh
Q 007394 571 GVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~ 590 (605)
|+++|+||++|+++++.+
T Consensus 105 --~~~~Gvit~~dl~~~l~~ 122 (125)
T 1pbj_A 105 --DEIIGVISATDILRAKMA 122 (125)
T ss_dssp --TEEEEEEEHHHHHHHHC-
T ss_pred --CEEEEEEEHHHHHHHHHh
Confidence 899999999999998764
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.1e-16 Score=154.06 Aligned_cols=127 Identities=16% Similarity=0.167 Sum_probs=110.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcC---CCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT---THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 485 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~---~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~ 485 (605)
.+.+|+++|++ +++++++++|+.++++.|++. +++.+||+|++ ++++|+|+.+|++.. .
T Consensus 52 ~~~~v~~iM~~--~~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd~~-----------~~lvGivt~~dll~~---~-- 113 (205)
T 3kxr_A 52 SENEIGRYTDH--QMLVLSDKATVAQAQRFFRRIELDCNDNLFIVDEA-----------DKYLGTVRRYDIFKH---E-- 113 (205)
T ss_dssp CTTCGGGGCBC--CCCEEETTCBHHHHHHHHHHCCCTTCCEEEEECTT-----------CBEEEEEEHHHHTTS---C--
T ss_pred CcchHHhhccC--ceEEECCCCcHHHHHHHHHhhCccCeeEEEEEcCC-----------CeEEEEEEHHHHHhC---C--
Confidence 45689999999 999999999999999999986 77899999987 899999999998431 0
Q ss_pred hhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcc
Q 007394 486 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP 565 (605)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd 565 (605)
...+++++|++++.++++++++.++++.|.+++++.+||||
T Consensus 114 ---------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD 154 (205)
T 3kxr_A 114 ---------------------------------------PHEPLISLLSEDSRALTANTTLLDAAEAIEHSREIELPVID 154 (205)
T ss_dssp ---------------------------------------TTSBGGGGCCSSCCCEETTSCHHHHHHHHHTSSCSEEEEEC
T ss_pred ---------------------------------------CcchHHHHhcCCCeEECCCCCHHHHHHHHHhcCCCEEEEEc
Confidence 01358899999999999999999999999999999999999
Q ss_pred ccccCCCCceEEEEeHHHhHHHHhhhhCCCcC
Q 007394 566 KYEAAGVSPVVGILTRQDLRAFNILTAFPHLE 597 (605)
Q Consensus 566 ~~~~~~~g~lvGiITr~Dll~~~~~~~~~~~~ 597 (605)
+ +|+++|+||++|+++.+.++......
T Consensus 155 ~-----~g~lvGiIT~~Dil~~i~~e~~ed~~ 181 (205)
T 3kxr_A 155 D-----AGELIGRVTLRAATALVREHYEAQLM 181 (205)
T ss_dssp T-----TSBEEEEEEHHHHHHHHHHHHC----
T ss_pred C-----CCeEEEEEEHHHHHHHHHHHHHHHHH
Confidence 8 79999999999999999887766554
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=99.68 E-value=4.7e-17 Score=145.09 Aligned_cols=126 Identities=17% Similarity=0.294 Sum_probs=105.5
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHH-HHhhchhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVL-ALKKKWFL 486 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~-~l~~~~~~ 486 (605)
++..+++++|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+.+ .+.+..
T Consensus 5 ~~~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~-- 69 (133)
T 1y5h_A 5 FTMTTARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD-----------DRLHGMLTDRDIVIKGLAAGL-- 69 (133)
T ss_dssp ---CCHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-----------GBEEEEEEHHHHHHTTGGGTC--
T ss_pred hhhcCHHHHhcC--CceEeCCCCCHHHHHHHHHHhCCCeEEEECCC-----------CeEEEEEeHHHHHHHHHhcCC--
Confidence 455789999998 89999999999999999999999999999877 89999999999963 322110
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
.....+++++|++++.++++++++.++++.|.+++.+++||+|+
T Consensus 70 ------------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~ 113 (133)
T 1y5h_A 70 ------------------------------------DPNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE 113 (133)
T ss_dssp ------------------------------------CTTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET
T ss_pred ------------------------------------CccccCHHHHhcCCCEEECCCCCHHHHHHHHHHcCCCEEEEEEC
Confidence 00113577888899999999999999999999999999999986
Q ss_pred cccCCCCceEEEEeHHHhHHHHhh
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
|+++|+||++|+++++.+
T Consensus 114 ------g~~~Giit~~dil~~l~~ 131 (133)
T 1y5h_A 114 ------HRLVGIVTEADIARHLPE 131 (133)
T ss_dssp ------TEEEEEEEHHHHHHTCC-
T ss_pred ------CEEEEEEEHHHHHHHHHh
Confidence 799999999999987654
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-17 Score=150.85 Aligned_cols=121 Identities=19% Similarity=0.292 Sum_probs=103.6
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+.+.+|+|+|+++.+++++++++++.++++.|.+++++.+||+|++ +++++|+|+.+|+++.+.+.
T Consensus 35 l~~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~~----------~~~lvGivt~~dl~~~~~~~---- 100 (156)
T 3oi8_A 35 FSDLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGED----------KDEVLGILHAKDLLKYMFNP---- 100 (156)
T ss_dssp HTTCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESSS----------TTCEEEEEEGGGGGGGSSCG----
T ss_pred cCCCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcCC----------CCcEEEEEEHHHHHHHHHcC----
Confidence 5678999999875578999999999999999999999999999975 13999999999996532110
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...+++++|.+ +.++++++++.++++.|.+++.+.+||+|+
T Consensus 101 -------------------------------------~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~- 141 (156)
T 3oi8_A 101 -------------------------------------EQFHLKSILRP-AVFVPEGKSLTALLKEFREQRNHMAIVIDE- 141 (156)
T ss_dssp -------------------------------------GGCCHHHHCBC-CCEEETTSBHHHHHHHHHHTTCCEEEEECT-
T ss_pred -------------------------------------CcccHHHHcCC-CEEECCCCCHHHHHHHHHhcCCeEEEEECC-
Confidence 11357778855 889999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhH
Q 007394 568 EAAGVSPVVGILTRQDLR 585 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll 585 (605)
+|+++|+||++|++
T Consensus 142 ----~g~~~Givt~~Dil 155 (156)
T 3oi8_A 142 ----YGGTSGLVTFEDII 155 (156)
T ss_dssp ----TSSEEEEEEHHHHC
T ss_pred ----CCCEEEEEEHHHhc
Confidence 79999999999986
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=2.1e-16 Score=141.22 Aligned_cols=124 Identities=17% Similarity=0.164 Sum_probs=106.2
Q ss_pred cccccccc---cCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 411 LTVGELID---AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 411 ~~v~diM~---~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
.+++|+|+ + ++.++++++++.++++.|.+++++.+||+| + ++++|+++.+|+.+.+.....
T Consensus 6 ~~v~~im~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd-~-----------~~~~Givt~~dl~~~~~~~~~-- 69 (135)
T 2rc3_A 6 KTVKHLLQEKGH--TVVAIGPDDSVFNAMQKMAADNIGALLVMK-D-----------EKLVGILTERDFSRKSYLLDK-- 69 (135)
T ss_dssp CBHHHHHHHHCC--CCCEECTTSBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHGGGSSS--
T ss_pred eeHHHHHhcCCC--CcEEECCCCcHHHHHHHHHhcCCCEEEEEE-C-----------CEEEEEEehHHHHHHHHHcCC--
Confidence 38999999 6 899999999999999999999999999999 5 899999999999753222100
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
.....+++++|++++.++++++++.++++.|.+++.+++||+|+
T Consensus 70 -----------------------------------~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~- 113 (135)
T 2rc3_A 70 -----------------------------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD- 113 (135)
T ss_dssp -----------------------------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET-
T ss_pred -----------------------------------CcccCCHHHhccCCCeEECCCCcHHHHHHHHHHhCCCEEEEEeC-
Confidence 00124688999999999999999999999999999999999986
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
|+++|+||++|+++++.++
T Consensus 114 -----g~~~Giit~~dll~~~~~~ 132 (135)
T 2rc3_A 114 -----GKVIGLLSIGDLVKDAISQ 132 (135)
T ss_dssp -----TEEEEEEEHHHHHHHHHC-
T ss_pred -----CEEEEEEEHHHHHHHHHhc
Confidence 8999999999999987653
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=3.1e-16 Score=144.21 Aligned_cols=141 Identities=16% Similarity=0.114 Sum_probs=110.9
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCe-eeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNG-FPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~-~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
....+|+++|++ ++.++++++++.++++.|.+++++. +||+|+ ++++|+|+.+|+++.+....
T Consensus 13 ~~~~~v~~im~~--~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~------------~~~vGivt~~dl~~~~~~~~-- 76 (157)
T 1o50_A 13 MKVKDVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD------------NKLVGMIPVMHLLKVSGFHF-- 76 (157)
T ss_dssp CBHHHHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET------------TEEEEEEEHHHHHHHHHHHH--
T ss_pred hccccHhhcccC--CCceECCCCCHHHHHHHHHhCCCCccEEEEEC------------CEEEEEEEHHHHHHHHhhhH--
Confidence 557899999999 9999999999999999999999999 999987 48999999999987654210
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
.... . ....+.. . .......+++++|++ +.++++++++.+++++|.+++.+++||+|+
T Consensus 77 ~~~~-~---------~~~~~~~-------~----~~~~~~~~v~~im~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~ 134 (157)
T 1o50_A 77 FGFI-P---------KEELIRS-------S----MKRLIAKNASEIMLD-PVYVHMDTPLEEALKLMIDNNIQEMPVVDE 134 (157)
T ss_dssp HCCC-C-----------------------C----CCCCSSCBHHHHCBC-CCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred Hhhh-c---------cHHHHHH-------H----HHHHcCCcHHHHcCC-CeEECCCCCHHHHHHHHHHCCCcEEEEEcC
Confidence 0000 0 0000000 0 000123468899999 999999999999999999999999999997
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhh
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++.+.++
T Consensus 135 -----~g~~vGiit~~dll~~l~~~ 154 (157)
T 1o50_A 135 -----KGEIVGDLNSLEILLALWKG 154 (157)
T ss_dssp -----TSCEEEEEEHHHHHHHHHHS
T ss_pred -----CCEEEEEEEHHHHHHHHHHh
Confidence 79999999999999988764
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=150.52 Aligned_cols=155 Identities=19% Similarity=0.258 Sum_probs=111.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
.++|+|+|+++.+++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+++.........
T Consensus 3 ~~~v~dim~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----------~~~~Givt~~dl~~~~~~~~~~~-- 69 (180)
T 3sl7_A 3 GYTVGDFMTPRQNLHVVKPSTSVDDALELLVEKKVTGLPVIDDN-----------WTLVGVVSDYDLLALDSISGRSQ-- 69 (180)
T ss_dssp CCBHHHHSEEGGGCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHTCC----------
T ss_pred ceeHHHhcCCCCCceeeCCCCcHHHHHHHHHHcCCCeEEEECCC-----------CeEEEEEEHHHHHhhhhhccccC--
Confidence 46899999875568899999999999999999999999999987 89999999999974321100000
Q ss_pred ccchhHHHhh--hcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 490 RRTEEWEVRE--KFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 490 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
... .... ...+..+. +... ........+++++|++++.++++++++.+++++|.+++.+++||+|+
T Consensus 70 --~~~-~~~~~~~~~~~~~~-------~~~~-~~~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~- 137 (180)
T 3sl7_A 70 --NDT-NLFPDVDSTWKTFN-------ELQK-LISKTYGKVVGDLMTPSPLVVRDSTNLEDAARLLLETKFRRLPVVDA- 137 (180)
T ss_dssp --------------CCCSHH-------HHHH-HHHTTTTCBHHHHSEESCCCEETTSBHHHHHHHHTTSTTCEEEEECT-
T ss_pred --Ccc-cccccccchhhhhH-------HHHH-HHhccccccHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCEEEEECC-
Confidence 000 0000 00000000 0000 00011235688999999999999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
+|+++|+||++|+++++.+...
T Consensus 138 ----~g~~vGiit~~dil~~~~~~~~ 159 (180)
T 3sl7_A 138 ----DGKLIGILTRGNVVRAALQIKR 159 (180)
T ss_dssp ----TCBEEEEEEHHHHHHHHHHHHH
T ss_pred ----CCeEEEEEEHHHHHHHHHHHhh
Confidence 7999999999999998876443
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-16 Score=146.22 Aligned_cols=133 Identities=17% Similarity=0.264 Sum_probs=109.9
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
..++|+|+|++ +++++++++++.++++.|.+++.+.+||+|++ ++++|+|+.+|+.+.+........
T Consensus 3 ~~~~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----------~~lvGivt~~dl~~~~~~~~~~~~ 69 (160)
T 2o16_A 3 LMIKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-----------KKLLGIVSQRDLLAAQESSLQRSA 69 (160)
T ss_dssp CCCBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHHHCC---
T ss_pred CcCcHHHHhcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHHHHHhhcccc
Confidence 45789999998 89999999999999999999999999999987 899999999999876543110000
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
. ........+++++|++++.++++++++.+++++|.+.+.+.+||+|+
T Consensus 70 -------------------~-----------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-- 117 (160)
T 2o16_A 70 -------------------Q-----------GDSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK-- 117 (160)
T ss_dssp ------------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET--
T ss_pred -------------------c-----------ccchhcccCHHHHhcCCCeEECCCCCHHHHHHHHHHhCCCEEEEEEC--
Confidence 0 00001124678899999999999999999999999999999999986
Q ss_pred cCCCCceEEEEeHHHhHHHHhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~ 590 (605)
|+++|+||++||++.+.+
T Consensus 118 ----g~lvGiit~~dil~~~~~ 135 (160)
T 2o16_A 118 ----DVLVGIITDSDFVTIAIN 135 (160)
T ss_dssp ----TEEEEEECHHHHHHHHHH
T ss_pred ----CEEEEEEEHHHHHHHHHH
Confidence 899999999999997665
|
| >3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-15 Score=170.09 Aligned_cols=194 Identities=12% Similarity=0.103 Sum_probs=132.9
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc----cc-hhhHHHHHHHHHHHhhhh-hccccccccCCCC
Q 007394 149 RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQK----GK-MHKLLLALSVSVFTSVCQ-YCLPFLADCKACD 222 (605)
Q Consensus 149 ~~~~~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~l~~~~~-~~~p~~~~~~~~~ 222 (605)
++-++.+.+.+++|+++|+++.+|.+++.++.+++..+... .. +..++.+++++++.+.+. ++.|+.
T Consensus 5 ~~~~r~~~~~~lvGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a------- 77 (632)
T 3org_A 5 MYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTFWCAVLSTEA------- 77 (632)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHSCGGG-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCcc-------
Confidence 34567788889999999999999999999988876432211 11 112344556666655554 566654
Q ss_pred CCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcc
Q 007394 223 PSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSG 302 (605)
Q Consensus 223 ~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG 302 (605)
.|. | -.++-..+ ++..+.++.. .+ .-.++.|++.+.+|+|+|.+.|
T Consensus 78 ---------~Gs-G-----------Ip~v~~~l-~g~~~~~~~~--------~~----~~~~~~K~~~~~l~igsG~s~G 123 (632)
T 3org_A 78 ---------EGS-G-----------LPQMKSIL-SGFYDKMRSA--------LE----LRVLFAKALGLICAIGGGLPVG 123 (632)
T ss_dssp ---------CBC-S-----------HHHHHHHT-TTTHHHHGGG--------GS----HHHHHHHHHHHHHHHHTTCSCB
T ss_pred ---------CCC-C-----------HHHHHHHH-hCcccccccc--------cc----HHHHHHHHHHHHHHHhcCCCcc
Confidence 121 1 12221111 1111011111 11 2235689999999999999999
Q ss_pred chhHHHHHHHHHHHHHHH--Hhhc--ccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcC-Cc--chHHHHHHHHH
Q 007394 303 LFLPIILMGSAYGRLLGM--AMGS--YTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNN-LL--LLPITMIVLLI 375 (605)
Q Consensus 303 ~f~Psl~iGa~~G~~~g~--~~~~--~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~-~~--~l~p~~~a~~~ 375 (605)
++.|++++||++|..+++ ++.. ....+...+..+|+||.+|+++++|++++++.+|.... ++ .+.|.++++++
T Consensus 124 rEGP~vqiGa~ig~~~~~~~~f~~~~~~~~~~r~ll~aGaaAG~aaaF~aPlaGvlFalE~~~~~~~~~~~~~~~~as~~ 203 (632)
T 3org_A 124 WEGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGAPLGGVLYSIETIASFYLVQAFWKGVLSALS 203 (632)
T ss_dssp SHHHHHHHHHHHHHHHTTSHHHHHHHHSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTCSEEETTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHHHHHHhCCccHhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999998888 6542 11224567899999999999999999999999998753 33 46788888889
Q ss_pred HHHHHhhc
Q 007394 376 AKTVGDSF 383 (605)
Q Consensus 376 a~~v~~~l 383 (605)
+..+.+.+
T Consensus 204 a~~v~~~~ 211 (632)
T 3org_A 204 GAIVYELL 211 (632)
T ss_dssp HHHHTTC-
T ss_pred HHHHHHHh
Confidence 98887755
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=4.5e-16 Score=143.77 Aligned_cols=134 Identities=19% Similarity=0.300 Sum_probs=108.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecC--CCCCCCCCCCCCceEEEeEeHHHHHHHHhhchh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE--GVVPPSGLANVATELHGLILRAHLVLALKKKWF 485 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~--~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~ 485 (605)
...++|+|+|.+ +++++++++++.++.+.|.+++++.+||+|+ + ++++|+|+.+|+.+.+.....
T Consensus 10 ~~~~~v~dim~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~~~~-----------~~~~Givt~~dl~~~~~~~~~ 76 (164)
T 2pfi_A 10 SHHVRVEHFMNH--SITTLAKDTPLEEVVKVVTSTDVTEYPLVESTES-----------QILVGIVQRAQLVQALQAEPP 76 (164)
T ss_dssp CCSCBHHHHCBC--CCCCEETTCBHHHHHHHHHTCCCSEEEEESCTTT-----------CBEEEEEEHHHHHHHHHC---
T ss_pred ccCCCHHHHcCC--CCeEECCCCcHHHHHHHHHhCCCCceeEEecCCC-----------CEEEEEEEHHHHHHHHHhhcc
Confidence 456889999999 8999999999999999999999999999996 5 899999999999876543210
Q ss_pred hhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccC------CceecCCCCHHHHHHHHHHcCCc
Q 007394 486 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT------PYTVIESMSVAKAMVLFRQVGLR 559 (605)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~------~~~v~~~~sl~~a~~~~~~~~~~ 559 (605)
...+ . ...+++++|.++ +.++.+++++.+++++|.+++.+
T Consensus 77 ~~~~--------~--------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~ 122 (164)
T 2pfi_A 77 SRAP--------G--------------------------HQQCLQDILARGCPTEPVTLTLFSETTLHQAQNLFKLLNLQ 122 (164)
T ss_dssp ------------C--------------------------CCCBHHHHHHTTCCCBCCCCCEETTCBHHHHHHHHHHTTCS
T ss_pred ccCC--------c--------------------------ccchhhhhhcccccccCCceEECCCCcHHHHHHHHHHhCCC
Confidence 0000 0 011244455544 78999999999999999999999
Q ss_pred EEEEccccccCCCCceEEEEeHHHhHHHHhhhhCC
Q 007394 560 HLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFP 594 (605)
Q Consensus 560 ~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~ 594 (605)
++||+|+ |+++|+||++|+++.+.+....
T Consensus 123 ~lpVvd~------g~l~Giit~~dil~~~~~~~~~ 151 (164)
T 2pfi_A 123 SLFVTSR------GRAVGCVSWVEMKKAISNLTNP 151 (164)
T ss_dssp EEEEEET------TEEEEEEEHHHHHHHHHHHHSC
T ss_pred EEEEEEC------CEEEEEEEHHHHHHHHHhhhCC
Confidence 9999996 8999999999999998875543
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.4e-16 Score=140.45 Aligned_cols=128 Identities=16% Similarity=0.280 Sum_probs=105.0
Q ss_pred cccccccc---ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhch
Q 007394 408 MRTLTVGE---LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 484 (605)
Q Consensus 408 l~~~~v~d---iM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~ 484 (605)
+.+.++++ +|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+.+..
T Consensus 5 ~~~~~v~~~~~~~~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~ 71 (144)
T 2nyc_A 5 FLKIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----------GYLINVYEAYDVLGLIKGGI 71 (144)
T ss_dssp GGGSBGGGSSCCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHTC-
T ss_pred hhhcchhhcCCCCCC--CceEECCCCcHHHHHHHHHHcCcceeeEEcCC-----------CcEEEEEcHHHHHHHhcccc
Confidence 33557777 8887 89999999999999999999999999999987 89999999999987654311
Q ss_pred hhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc------CCceecCCCCHHHHHHHHHHcCC
Q 007394 485 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT------TPYTVIESMSVAKAMVLFRQVGL 558 (605)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~sl~~a~~~~~~~~~ 558 (605)
... ...+++++|.+ ++.++++++++.++++.|.+++.
T Consensus 72 ~~~-------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~ 114 (144)
T 2nyc_A 72 YND-------------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARV 114 (144)
T ss_dssp ----------------------------------------CCSBHHHHHHHCC------CEECTTSBHHHHHHHHHHHTC
T ss_pred ccc-------------------------------------CCccHHHHHhcCccccCCCeEECCCCcHHHHHHHHHHCCC
Confidence 000 01245566655 57899999999999999999999
Q ss_pred cEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 559 RHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 559 ~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++||+|+ +|+++|+||++|+++++.+
T Consensus 115 ~~l~Vvd~-----~g~~~Giit~~dil~~l~~ 141 (144)
T 2nyc_A 115 HRFFVVDD-----VGRLVGVLTLSDILKYILL 141 (144)
T ss_dssp SEEEEECT-----TSBEEEEEEHHHHHHHHHH
T ss_pred CEEEEECC-----CCCEEEEEEHHHHHHHHHh
Confidence 99999998 7999999999999998765
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=4.7e-16 Score=146.76 Aligned_cols=158 Identities=20% Similarity=0.376 Sum_probs=113.9
Q ss_pred ccccccccccccccCCC--eeEE--cCcccHHHHHHHHhcCCCCeeeee--cCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 406 PWMRTLTVGELIDAKPP--VITL--SGIEKVSQIVDVLRNTTHNGFPVL--DEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 406 ~~l~~~~v~diM~~~~~--v~~v--~~~~tl~~a~~~l~~~~~~~~PVv--d~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
..++..+|+|+|+++.+ ++++ ++++++.++.+.|.+++++.+||+ |++ ++++|+|+.+|+++.
T Consensus 6 ~~~~~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~~-----------~~lvGiit~~dl~~~ 74 (185)
T 2j9l_A 6 EFAHKTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRES-----------QRLVGFVLRRDLIIS 74 (185)
T ss_dssp ---CCCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTT-----------CBEEEEEEHHHHHHH
T ss_pred hhhccCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECCC-----------CeEEEEEEHHHHHHH
Confidence 45678899999998311 7888 999999999999999999999999 555 899999999999887
Q ss_pred HhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCc
Q 007394 480 LKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLR 559 (605)
Q Consensus 480 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~ 559 (605)
+.......... .+ ... ..+... ..+ . ........+++++|++++.++++++++.+++++|.+++.+
T Consensus 75 ~~~~~~~~~~~-~~-----~~~--~~~~~~---~~~--~-~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~ 140 (185)
T 2j9l_A 75 IENARKKQDGV-VS-----TSI--IYFTEH---SPP--L-PPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLR 140 (185)
T ss_dssp HHHHHTSCSCC-CT-----TCE--EECSSS---CCC--C-CTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCS
T ss_pred HHhhcccCCCc-cc-----cce--eecccC---Ccc--c-ccccccCccHHHhhCcCCeEeCCCCCHHHHHHHHHhCCCc
Confidence 65421000000 00 000 000000 000 0 0001123578999999999999999999999999999999
Q ss_pred EEEEccccccCCCCceEEEEeHHHhHHHHhhhhCC
Q 007394 560 HLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAFP 594 (605)
Q Consensus 560 ~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~~ 594 (605)
++||+|+ |+++|+||++|+++.+.+....
T Consensus 141 ~l~Vvd~------g~~vGiit~~dll~~l~~~~~~ 169 (185)
T 2j9l_A 141 QCLVTHN------GRLLGIITKKDVLKHIAQMANQ 169 (185)
T ss_dssp EEEEEET------TEEEEEEEHHHHHHHHHHHCC-
T ss_pred EEEEEEC------CEEEEEEEHHHHHHHHHHhhcc
Confidence 9999986 8999999999999998875544
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.8e-16 Score=146.14 Aligned_cols=138 Identities=19% Similarity=0.127 Sum_probs=111.3
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
.+...+|+++|.++.+++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+.+.+......
T Consensus 10 ~l~~~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~~-----------~~lvGivt~~dl~~~~~~~~~~ 78 (159)
T 1yav_A 10 QLLEATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----------YRLHGLIGTNMIMNSIFGLERI 78 (159)
T ss_dssp -CTTCBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------CBEEEEEEHHHHHHHHBCSSSB
T ss_pred HHhHhhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECCC-----------CCEEEEeEHHHHHHHhhhhccc
Confidence 35678999999764468899999999999999999999999999987 8999999999998765431100
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
. . ......+++++|++++.++.+++++.+++++|.+.+. +||+|+
T Consensus 79 ~---------------~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~--lpVvd~ 123 (159)
T 1yav_A 79 E---------------F------------------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNGF--VCVEND 123 (159)
T ss_dssp C---------------G------------------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCSE--EEEECT
T ss_pred c---------------h------------------hhhccCCHHHhcCCCCceEcCCCCHHHHHHHHHhCCE--EEEEeC
Confidence 0 0 0011246788999999999999999999999998877 999997
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
+|+++|+||++|+++.+.++....
T Consensus 124 -----~g~~vGiit~~dil~~~~~~~~~~ 147 (159)
T 1yav_A 124 -----EQVFEGIFTRRVVLKELNKHIRSL 147 (159)
T ss_dssp -----TCBEEEEEEHHHHHHHHHHHC---
T ss_pred -----CCeEEEEEEHHHHHHHHHHHHHhh
Confidence 799999999999999888755443
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=99.66 E-value=5.5e-16 Score=146.57 Aligned_cols=126 Identities=17% Similarity=0.195 Sum_probs=109.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
.++++++|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.+.....
T Consensus 8 ~~~v~~im~~--~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~~-----------g~~vGivt~~dl~~~~~~~~~---- 70 (184)
T 1pvm_A 8 FMRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-----------GNDVGLLSERSIIKRFIPRNK---- 70 (184)
T ss_dssp CCBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-----------SCEEEEEEHHHHHHHTGGGCC----
T ss_pred ccCHHHhcCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHHHhhccc----
Confidence 4789999998 99999999999999999999999999999977 899999999999775432100
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
.....+++++|.+++.++++++++.+++++|.+++.+++||+|+
T Consensus 71 ---------------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--- 114 (184)
T 1pvm_A 71 ---------------------------------KPDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD--- 114 (184)
T ss_dssp ---------------------------------CGGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT---
T ss_pred ---------------------------------CcccCCHHHHhCCCCcEECCCCCHHHHHHHHHHcCCcEEEEEcC---
Confidence 00124688999999999999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHhh
Q 007394 570 AGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|+++++.+
T Consensus 115 --~g~~~Givt~~dll~~~~~ 133 (184)
T 1pvm_A 115 --PGRVVGIVTLTDLSRYLSR 133 (184)
T ss_dssp --TCCEEEEEEHHHHTTTSCH
T ss_pred --CCeEEEEEEHHHHHHHHHh
Confidence 7999999999999987655
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.1e-16 Score=143.24 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=109.4
Q ss_pred cccccccccC----CCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 411 LTVGELIDAK----PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 411 ~~v~diM~~~----~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
.+|+|+|+++ .++.++++++++.++++.|.+++++.+||+| + ++++|+++.+|+++.+......
T Consensus 7 ~~v~dim~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~~-~-----------~~~~Givt~~dl~~~~~~~~~~ 74 (157)
T 4fry_A 7 TTVAQILKAKPDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVD-G-----------DDIAGIVTERDYARKVVLQERS 74 (157)
T ss_dssp CBHHHHHHHSTTTTCCCCEEETTSBHHHHHHHHHHHTCSEEEEES-S-----------SSEEEEEEHHHHHHHSGGGTCC
T ss_pred HHHHHHHhcccccCCCCeEECCCCcHHHHHHHHHHcCCCEEEEee-C-----------CEEEEEEEHHHHHHHHHhccCC
Confidence 5799999953 2679999999999999999999999999965 4 8999999999998765431100
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
....+++++|++++.++.+++++.+++++|.+++.+++||+|+
T Consensus 75 -------------------------------------~~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~ 117 (157)
T 4fry_A 75 -------------------------------------SKATRVEEIMTAKVRYVEPSQSTDECMALMTEHRMRHLPVLDG 117 (157)
T ss_dssp -------------------------------------SSSCBHHHHSBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET
T ss_pred -------------------------------------ccccCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEEC
Confidence 0124578889999999999999999999999999999999986
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhhhCCC
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILTAFPH 595 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~~~~~ 595 (605)
|+++|+||++|+++++.++....
T Consensus 118 ------g~~~Giit~~dil~~l~~~~~~~ 140 (157)
T 4fry_A 118 ------GKLIGLISIGDLVKSVIADQQFT 140 (157)
T ss_dssp ------TEEEEEEEHHHHHHHHHTTCCCC
T ss_pred ------CEEEEEEEHHHHHHHHHHHHHhh
Confidence 89999999999999988765443
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-16 Score=168.90 Aligned_cols=160 Identities=14% Similarity=0.146 Sum_probs=128.6
Q ss_pred HhhcCCcHHHHHHHhcCCCCCCCCCCccccccccccccccCCCeeEEcCc-ccHHHHHHHHhcCCCCeeeeec-CCCCCC
Q 007394 380 GDSFNPSIYEIILELKGLPFLDAHPEPWMRTLTVGELIDAKPPVITLSGI-EKVSQIVDVLRNTTHNGFPVLD-EGVVPP 457 (605)
Q Consensus 380 ~~~l~~~iy~~~l~~~g~~~l~~~~~~~l~~~~v~diM~~~~~v~~v~~~-~tl~~a~~~l~~~~~~~~PVvd-~~~~~~ 457 (605)
.+++...+++.++..+++.........++.+.+|+|+|++ +++++.++ +++.++++.|.+++++.+||+| ++
T Consensus 353 ~ryls~~~~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~--~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~~---- 426 (527)
T 3pc3_A 353 RNYMTKFVSDNWMEARNFKEPVNEHGHWWWSLAIAELELP--APPVILKSDATVGEAIALMKKHRVDQLPVVDQDD---- 426 (527)
T ss_dssp GGGTTTTTSHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCC--CCSCCEETTCBHHHHHHHHHHHTCSEEEEECTTT----
T ss_pred hhhHhhhhcHHHHHhcCCccccccccccccCCcHHHhCcC--CCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECCC----
Confidence 3455556667888888876544444556888999999998 99999999 9999999999999999999999 55
Q ss_pred CCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCC
Q 007394 458 SGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 537 (605)
Q Consensus 458 ~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~ 537 (605)
++++|+|+.+|+++.+..... ....+++++|++++
T Consensus 427 -------g~lvGiVt~~Dll~~l~~~~~--------------------------------------~~~~~V~~im~~~~ 461 (527)
T 3pc3_A 427 -------GSVLGVVGQETLITQIVSMNR--------------------------------------QQSDPAIKALNKRV 461 (527)
T ss_dssp -------CCEEEEEEHHHHHHHHHHHCC--------------------------------------CTTSBGGGGEETTC
T ss_pred -------CEEEEEEEHHHHHHHHHhccC--------------------------------------cCCCcHHHHhcCCC
Confidence 899999999999876543110 01246889999999
Q ss_pred ceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 538 ~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
.++++++++.+++++|.++++ +||||++ ..++|+++||||++||++++.++..
T Consensus 462 ~~v~~~~~l~~a~~~m~~~~~--~pVVd~~-~~~~g~lvGIVT~~Dll~~l~~~~~ 514 (527)
T 3pc3_A 462 IRLNESEILGKLARVLEVDPS--VLILGKN-PAGKVELKALATKLDVTTFIAAGKQ 514 (527)
T ss_dssp CEEETTSBHHHHHHHHTTCSE--EEEEEEC-SSSCEEEEEEEEHHHHHHHHHTCCC
T ss_pred eEECCCCcHHHHHHHHhhCCE--EEEEeCC-cccCCeEEEEEEHHHHHHHHHhccc
Confidence 999999999999999977665 7999870 0012899999999999999987543
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=9.2e-16 Score=151.94 Aligned_cols=162 Identities=15% Similarity=0.147 Sum_probs=109.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
..+|+|+|++ ++.++++++++.++++.|.+++++.+||+|++ ++++|+++..|+.+.+.........
T Consensus 6 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----------~~l~Giit~~di~~~~~~~~~~~~~ 72 (245)
T 3l2b_A 6 KLKVEDLEMD--KIAPLAPEVSLKMAWNIMRDKNLKSIPVADGN-----------NHLLGMLSTSNITATYMDIWDSNIL 72 (245)
T ss_dssp CCBGGGSCCB--CCCCBCTTCBHHHHHHHHHHTTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHCCCCTTHH
T ss_pred cCcHHHhcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHHhhhhhhh
Confidence 4689999998 89999999999999999999999999999987 8999999999999887542210000
Q ss_pred c--cchhHHHhhh-----------------------cchhHhhhhcC---------------------------------
Q 007394 490 R--RTEEWEVREK-----------------------FSWVELAEREG--------------------------------- 511 (605)
Q Consensus 490 ~--~~~~~~~~~~-----------------------~~~~~~~~~~~--------------------------------- 511 (605)
. .....+.... .....+.+...
T Consensus 73 ~~~~~~~~~v~~~l~~~~l~~~~~~~~~~g~~~i~a~~~~~~~~~~~~~~ivIvgdr~~~~~~~i~~~~~~liit~~~~~ 152 (245)
T 3l2b_A 73 AKSATSLDNILDTLSAEAQNINEERKVFPGKVVVAAMQAESLKEFISEGDIAIAGDRAEIQAELIELKVSLLIVTGGHTP 152 (245)
T ss_dssp HHTTCCHHHHHHHTTCEEEECCTTCCCCCSCEEECCSCGGGGGGTCCTTCEEEECSCHHHHHHHHHTTCSEEEECTTCCC
T ss_pred hhccCCHHHHHHHhCCEEEeccCCcceeeeeEEEEeCChHHHHhcCCCCCEEEECCCHHHHHHHHHcCCCEEEECCCCCC
Confidence 0 0000000000 00000000000
Q ss_pred -----------------cccccccChhhhhhhcccccccc-cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCC
Q 007394 512 -----------------KIEEVAVTSEEMEMYIDLHPLTN-TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVS 573 (605)
Q Consensus 512 -----------------~~~~~~~~~~~~~~~~~v~~im~-~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g 573 (605)
+..+............+++++|+ +++.++++++++.+++++|.+++++++||+|+ +|
T Consensus 153 ~~~v~~~a~~~~~~~i~t~~d~~~~~~~~~~~~~v~~im~~~~~~~~~~~~~~~~~~~~m~~~~~~~~pVvd~-----~~ 227 (245)
T 3l2b_A 153 SKEIIELAKKNNITVITTPHDSFTASRLIVQSLPVDYVMTKDNLVAVSTDDLVEDVKVTMSETRYSNYPVIDE-----NN 227 (245)
T ss_dssp CHHHHHHHHHHTCEEEECSSCHHHHHHHGGGGSBHHHHSBCTTCCCEETTSBHHHHHHHHHHHCCSEEEEECT-----TC
T ss_pred CHHHHHHHHHcCCeEEEeCCChHHHHHHHhcCCceeeEecCCccEEECCCCcHHHHHHHHHhcCCceEEEEcC-----CC
Confidence 00000000111233567899999 89999999999999999999999999999998 79
Q ss_pred ceEEEEeHHHhHHHHh
Q 007394 574 PVVGILTRQDLRAFNI 589 (605)
Q Consensus 574 ~lvGiITr~Dll~~~~ 589 (605)
+++|+||++|++++..
T Consensus 228 ~~~Giit~~dll~~~~ 243 (245)
T 3l2b_A 228 KVVGSIARFHLISTHK 243 (245)
T ss_dssp BEEEEEECC-------
T ss_pred eEEEEEEHHHhhchhh
Confidence 9999999999998754
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.8e-15 Score=146.61 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=106.5
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+++++|.+ +++++++++++.++++.|.+++++++||+|++ ++++|+|+.+|+.+.+.
T Consensus 13 ~~~~~~~~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-----------~~l~Givt~~dl~~~~~--------- 70 (213)
T 1vr9_A 13 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDRE-----------GHFRGVVNKEDLLDLDL--------- 70 (213)
T ss_dssp CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-----------SBEEEEEEGGGGTTSCT---------
T ss_pred cCHHHhhcC--CCeEECCCCcHHHHHHHHHHCCCCEEEEEcCC-----------CEEEEEEEHHHHHhhcC---------
Confidence 578999999 99999999999999999999999999999977 89999999999843110
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
..+++++|++++.++++++++.++.++|.+++++++||+|+
T Consensus 71 -----------------------------------~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---- 111 (213)
T 1vr9_A 71 -----------------------------------DSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE---- 111 (213)
T ss_dssp -----------------------------------TSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT----
T ss_pred -----------------------------------CCcHHHHccCCCEEECCCCcHHHHHHHHHHhCCCEEEEEcC----
Confidence 12588999999999999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHhhh
Q 007394 571 GVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++.+...
T Consensus 112 -~g~lvGiit~~Dil~~~~~~ 131 (213)
T 1vr9_A 112 -EMRLKGAVSLHDFLEALIEA 131 (213)
T ss_dssp -TCBEEEEEEHHHHHHHHHHS
T ss_pred -CCEEEEEEEHHHHHHHHHHH
Confidence 79999999999999987653
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.3e-15 Score=152.55 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=109.5
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcC-----CCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhc
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 483 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~-----~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~ 483 (605)
.+.+|+++|++ +++++++++++.++.+.|+++ +++.+||+|++ ++++|+|+.+|++.. .
T Consensus 135 ~~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd~~-----------~~lvGivt~~dll~~--~- 198 (286)
T 2oux_A 135 EDETAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-----------NHLVGVISLRDLIVN--D- 198 (286)
T ss_dssp CTTBHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-----------CBEEEEEEHHHHTTS--C-
T ss_pred ChHHHHHhCCC--CceEECCCCcHHHHHHHHHHcccCccceeEEEEEcCC-----------CeEEEEEEHHHHHcC--C-
Confidence 45789999999 999999999999999999986 77889999987 899999999999531 0
Q ss_pred hhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEE
Q 007394 484 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV 563 (605)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpV 563 (605)
...+++++|++++.++++++++.++.++|.+++.+.+||
T Consensus 199 -----------------------------------------~~~~v~~im~~~~~~v~~~~~l~ea~~~m~~~~~~~lpV 237 (286)
T 2oux_A 199 -----------------------------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPV 237 (286)
T ss_dssp -----------------------------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEE
T ss_pred -----------------------------------------CCCcHHHHcCCCCeeecCCCCHHHHHHHHHHcCCcEEEE
Confidence 013578889999999999999999999999999999999
Q ss_pred ccccccCCCCceEEEEeHHHhHHHHhhhhCCCc
Q 007394 564 VPKYEAAGVSPVVGILTRQDLRAFNILTAFPHL 596 (605)
Q Consensus 564 Vd~~~~~~~g~lvGiITr~Dll~~~~~~~~~~~ 596 (605)
||+ +|+++|+||++|+++.+.++.....
T Consensus 238 Vd~-----~g~lvGiIT~~Dil~~i~~e~~ed~ 265 (286)
T 2oux_A 238 TDY-----DDHLLGIVTVDDIIDVIDDEAASDY 265 (286)
T ss_dssp ECT-----TCBEEEEEEHHHHHHHHHHHHHC--
T ss_pred EcC-----CCeEEEEEEHHHHHHHHHHHhHHHH
Confidence 998 7999999999999998887655443
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.9e-15 Score=149.03 Aligned_cols=126 Identities=20% Similarity=0.208 Sum_probs=105.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcC-----CCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhch
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKW 484 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~-----~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~ 484 (605)
..+++++|++ +++++++++++.++++.|+++ +++.+||+|++ ++++|+|+.+|++.. .
T Consensus 134 ~~~v~~iM~~--~~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd~~-----------~~lvGivt~~dll~~--~-- 196 (278)
T 2yvy_A 134 EDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----------GRLKGVLSLRDLIVA--D-- 196 (278)
T ss_dssp TTBGGGTCBS--CCCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEECTT-----------CBEEEEEEHHHHHHS--C--
T ss_pred cchHHhhcCC--CceEECCCCcHHHHHHHHHHccCCccceeEEEEECCC-----------CCEEEEEEHHHHhcC--C--
Confidence 4678999999 999999999999999999876 67899999987 899999999999541 0
Q ss_pred hhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEc
Q 007394 485 FLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVV 564 (605)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVV 564 (605)
...+++++|++++.++++++++.+++++|.+++.+.+|||
T Consensus 197 ----------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv 236 (278)
T 2yvy_A 197 ----------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVV 236 (278)
T ss_dssp ----------------------------------------TTCBSTTTSBSSCCCEETTSBHHHHHHHHHHHTCSEEEEE
T ss_pred ----------------------------------------CCCcHHHHhCCCCeEEeCCCCHHHHHHHHHhcCCCEEEEE
Confidence 0135889999999999999999999999999999999999
Q ss_pred cccccCCCCceEEEEeHHHhHHHHhhhhCCCcC
Q 007394 565 PKYEAAGVSPVVGILTRQDLRAFNILTAFPHLE 597 (605)
Q Consensus 565 d~~~~~~~g~lvGiITr~Dll~~~~~~~~~~~~ 597 (605)
|+ +|+++|+||++|+++.+.++......
T Consensus 237 d~-----~g~lvGivT~~Dil~~i~~e~~ed~~ 264 (278)
T 2yvy_A 237 DE-----EGRLVGIVTVDDVLDVLEAEATEDIH 264 (278)
T ss_dssp CT-----TSBEEEEEEHHHHHHHC---------
T ss_pred eC-----CCeEEEEEEHHHHHHHHHHHhHHHHH
Confidence 98 79999999999999988776555443
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-15 Score=150.32 Aligned_cols=134 Identities=19% Similarity=0.186 Sum_probs=113.3
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
..+++++|.+ ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.+.+.. ..
T Consensus 155 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~-~~-- 218 (296)
T 3ddj_A 155 IFPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-----------NKVVGIVTVVNAIKQLAKAV-DK-- 218 (296)
T ss_dssp CCBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHHHHH-HH--
T ss_pred cccHHHhhcC--CCeEECCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHHHH-hh--
Confidence 4589999998 89999999999999999999999999999987 89999999999988765311 00
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
... ......+++++|++++.++++++++.+++++|.+++.+++||+|+
T Consensus 219 -----------~~~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~--- 266 (296)
T 3ddj_A 219 -----------LDP------------------DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK--- 266 (296)
T ss_dssp -----------TCT------------------HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT---
T ss_pred -----------cCh------------------hhhcCcCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEECC---
Confidence 000 001124688899999999999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHhhhhC
Q 007394 570 AGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
+|+++|+||++|+++++.++..
T Consensus 267 --~g~~~Giit~~Dil~~l~~~~~ 288 (296)
T 3ddj_A 267 --DNTIRGIITERDLLIALHHILV 288 (296)
T ss_dssp --TSCEEEEEEHHHHHHHHHHHHH
T ss_pred --CCeEEEEEcHHHHHHHHHHHhc
Confidence 7999999999999999887543
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=149.11 Aligned_cols=126 Identities=17% Similarity=0.289 Sum_probs=108.5
Q ss_pred ccccccc---cccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 410 TLTVGEL---IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 410 ~~~v~di---M~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
+.+++++ |.+ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+++.+......
T Consensus 186 ~~~v~~~~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~~-----------~~~~Giit~~dl~~~~~~~~~~ 252 (323)
T 3t4n_C 186 KIPIGDLNIITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----------GYLINVYEAYDVLGLIKGGIYN 252 (323)
T ss_dssp CSBGGGTTCSBCT--TCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEETTHHHHHHHTTHHH
T ss_pred hCcHHHcCCCCCC--CcEEECCCCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEeHHHHHHHHhhchhh
Confidence 4578899 887 89999999999999999999999999999987 8999999999998876542110
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc------CCceecCCCCHHHHHHHHHHcCCcE
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT------TPYTVIESMSVAKAMVLFRQVGLRH 560 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~------~~~~v~~~~sl~~a~~~~~~~~~~~ 560 (605)
. ...+++++|++ ++.++++++++.+++++|.+++.++
T Consensus 253 ~-------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~ 295 (323)
T 3t4n_C 253 D-------------------------------------LSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHR 295 (323)
T ss_dssp H-------------------------------------TTSBHHHHGGGSCTTCCCCEEECTTCBHHHHHHHHHHSCCCE
T ss_pred h-------------------------------------ccCCHHHHHhhccccCCCCEEECCCCCHHHHHHHHHHhCCCE
Confidence 0 11345666666 7899999999999999999999999
Q ss_pred EEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 561 LLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 561 lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+||+|+ +|+++|+||++|+++++..
T Consensus 296 l~Vvd~-----~~~l~Giit~~Dil~~l~~ 320 (323)
T 3t4n_C 296 FFVVDD-----VGRLVGVLTLSDILKYILL 320 (323)
T ss_dssp EEEECT-----TSBEEEEEEHHHHHHHHHH
T ss_pred EEEECC-----CCcEEEEEEHHHHHHHHHh
Confidence 999998 7999999999999998875
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=144.16 Aligned_cols=132 Identities=16% Similarity=0.239 Sum_probs=108.1
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+++++|.+ ++.++++++++.++++.|.+++++.+||++ + ++++|+|+.+|+++.+.+.......
T Consensus 148 ~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~-~-----------~~~~Givt~~dl~~~~~~~~~~~~~- 212 (280)
T 3kh5_A 148 EVIDDYITR--DVIVATPGERLKDVARTMVRNGFRRLPVVS-E-----------GRLVGIITSTDFIKLLGSDWAFNHM- 212 (280)
T ss_dssp CBSGGGCBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHTSHHHHHHH-
T ss_pred CCHHHHhCC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEE-C-----------CEEEEEEEHHHHHHHHhhhhhhhhh-
Confidence 478999998 899999999999999999999999999994 4 8999999999998876542210000
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
. .... ......+++++|++++.++++++++.+|++.|.+++.+++||+|+
T Consensus 213 -------~-~~~~------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~---- 262 (280)
T 3kh5_A 213 -------Q-TGNV------------------REITNVRMEEIMKRDVITAKEGDKLKKIAEIMVTNDIGALPVVDE---- 262 (280)
T ss_dssp -------H-SCCT------------------HHHHHCBHHHHSBSSCCCBCTTCBHHHHHHHHHHHTCCEEEEECT----
T ss_pred -------c-ccch------------------hhhhCCcHHHHhcCCCEEECCCCCHHHHHHHHHHCCCCEEEEECC----
Confidence 0 0000 001235688999999999999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHH
Q 007394 571 GVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~ 588 (605)
+|+++|+||++|+++++
T Consensus 263 -~g~~~Givt~~dil~~l 279 (280)
T 3kh5_A 263 -NLRIKGIITEKDVLKYF 279 (280)
T ss_dssp -TCBEEEEEEHHHHGGGG
T ss_pred -CCeEEEEEeHHHHHHhh
Confidence 78999999999999864
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.53 E-value=1.7e-14 Score=145.51 Aligned_cols=149 Identities=12% Similarity=0.130 Sum_probs=107.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHH------HHHhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV------LALKKK 483 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~------~~l~~~ 483 (605)
+.+++++|.+ ++.++++++++.++.+.|.+++.+.+||+|++ ++++|+++.+|++ +.+...
T Consensus 125 ~~~v~~~m~~--~~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd~~-----------~~~~Giit~~dl~~~~~~~~~~~~~ 191 (282)
T 2yzq_A 125 GVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSE-----------GNLVGIVDETDLLRDSEIVRIMKST 191 (282)
T ss_dssp GCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-----------SCEEEEEEGGGGGGCGGGCC-----
T ss_pred cCcHHHHhCC--CCEEECCCCCHHHHHHHHHHcCCcEEEEEcCC-----------CeEEEEEEHHHHhhhhhhhhhhccc
Confidence 5678999988 89999999999999999999999999999987 8999999999997 322100
Q ss_pred hhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEE
Q 007394 484 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV 563 (605)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpV 563 (605)
.....+ ...+.+. ....+............+++++|++++.++.+++++.+|+++|.+++++++||
T Consensus 192 ~~~~~~----------~~~~~~~----~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpV 257 (282)
T 2yzq_A 192 ELAASS----------EEEWILE----SHPTLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPV 257 (282)
T ss_dssp -----------------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEE
T ss_pred hhhhhh----------hhhhhcc----cchHHHHhHhhhhhccCCHHHhcCCCCceeCCCCCHHHHHHHHHHcCcceeEE
Confidence 000000 0000000 00000000000111235789999999999999999999999999999999999
Q ss_pred ccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 564 VPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 564 Vd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+ +|+++|+||++|+++++.+
T Consensus 258 vd~-----~~~lvGiit~~Dil~~~~~ 279 (282)
T 2yzq_A 258 IRG-----EGDLIGLIRDFDLLKVLVK 279 (282)
T ss_dssp EET-----TTEEEEEEEHHHHGGGGCC
T ss_pred ECC-----CCCEEEEEeHHHHHHHHHh
Confidence 998 7899999999999987754
|
| >1ots_A Voltage-gated CLC-type chloride channel ERIC; CLC chloride channel, FAB complex, membrane protein; 2.51A {Escherichia coli} SCOP: f.20.1.1 PDB: 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2htl_A 3ejy_A 2ht2_A 2fed_A 2fec_A 1otu_A 3ejz_A 2ht4_A 2htk_A 2ht3_A 1ott_A 2h2s_A 3det_A 2ez0_A 3nmo_A ... | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-13 Score=146.07 Aligned_cols=187 Identities=12% Similarity=0.119 Sum_probs=133.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc------cchh-hHHHHHHHHHHHhhhhh-ccccccccCCCCC
Q 007394 152 VMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQK------GKMH-KLLLALSVSVFTSVCQY-CLPFLADCKACDP 223 (605)
Q Consensus 152 ~~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~l~~~~~~-~~p~~~~~~~~~~ 223 (605)
+..+...+++|+++|+++.+|.++++++++++...... ++|. .++.+++++++++.+.. +.|+.
T Consensus 33 ~~~~~~~~liGv~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~l~~~~~p~a-------- 104 (465)
T 1ots_A 33 LAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEA-------- 104 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHhCccc--------
Confidence 56677889999999999999999999999887543211 1121 22445555655554432 34443
Q ss_pred CCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccc
Q 007394 224 SFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGL 303 (605)
Q Consensus 224 ~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~ 303 (605)
.|. +.++ ++..++... .... .-..+.|++.+.+|+++|.+.|+
T Consensus 105 --------~Gs------------Gip~------------v~~~l~~~~--~~~~---~r~~~~k~~~~~lti~sG~s~Gr 147 (465)
T 1ots_A 105 --------GGS------------GIPE------------IEGALEDQR--PVRW---WRVLPVKFFGGLGTLGGGMVLGR 147 (465)
T ss_dssp --------SSC------------SHHH------------HHHHHTTCS--CCCH---HHHHHHHHHHHHHHHHTTCSCBS
T ss_pred --------cCC------------ChHH------------HHHHHhCCC--CCCc---HHHHHHHHHHHHHHHhcCCCcCC
Confidence 111 1122 222222211 1111 22346799999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--c--hHHHHHHHHHHHH
Q 007394 304 FLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--L--LPITMIVLLIAKT 378 (605)
Q Consensus 304 f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~--l~p~~~a~~~a~~ 378 (605)
+.|++++||++|..+++.+......+...+..+|++|.+|+++++|++++++.+|.. ++++ . +.|+++++++++.
T Consensus 148 EGP~vqiGa~ig~~l~~~~~l~~~~~~r~li~~GaaAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~a~~ 227 (465)
T 1ots_A 148 EGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTI 227 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999852123355789999999999999999999999999965 5554 4 8899999999999
Q ss_pred HHhhc
Q 007394 379 VGDSF 383 (605)
Q Consensus 379 v~~~l 383 (605)
+++.+
T Consensus 228 v~~~~ 232 (465)
T 1ots_A 228 MYRIF 232 (465)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99865
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-14 Score=153.02 Aligned_cols=122 Identities=20% Similarity=0.214 Sum_probs=107.6
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcC-----CCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhc
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKK 483 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~-----~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~ 483 (605)
.+.+++++|++ ++++++++++++++.+.++++ +++.+||+|++ ++++|+++.+|++.. .
T Consensus 153 ~~~~v~~iM~~--~~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd~~-----------~~lvGiVt~~Dll~~--~- 216 (473)
T 2zy9_A 153 EEDEAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----------GRLKGVLSLRDLIVA--D- 216 (473)
T ss_dssp CTTBSTTTCBS--CEEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEECTT-----------SBEEEEEEHHHHHHS--C-
T ss_pred CCCCHHHhCCC--CceEeCCCCcHHHHHHHHHhccCCcCceeEEEEECCC-----------CcEEEEEEHHHHhcC--C-
Confidence 45689999999 999999999999999999875 46899999987 899999999999541 0
Q ss_pred hhhhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEE
Q 007394 484 WFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLV 563 (605)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpV 563 (605)
...+++++|++++.+++++++++++.+.|.+++.+.+||
T Consensus 217 -----------------------------------------~~~~v~dim~~~~~~v~~~~~l~ea~~~m~~~~~~~lpV 255 (473)
T 2zy9_A 217 -----------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPV 255 (473)
T ss_dssp -----------------------------------------TTSBGGGTSBSSCCCEESSSBHHHHHHHHHHHTCSEEEE
T ss_pred -----------------------------------------CCCcHHHHhCCCCeEEeCCCcHHHHHHHHHhcCCcEEEE
Confidence 013588999999999999999999999999999999999
Q ss_pred ccccccCCCCceEEEEeHHHhHHHHhhhh
Q 007394 564 VPKYEAAGVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 564 Vd~~~~~~~g~lvGiITr~Dll~~~~~~~ 592 (605)
||+ +|+++|+||++|+++...++.
T Consensus 256 VDe-----~g~lvGiIT~~Dil~~i~~e~ 279 (473)
T 2zy9_A 256 VDE-----EGRLVGIVTVDDVLDVLEAEA 279 (473)
T ss_dssp ECT-----TSBEEEEEEHHHHHHHHHHHH
T ss_pred EcC-----CCEEEEEEehHhhHHHHHHHh
Confidence 998 899999999999999876543
|
| >3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-13 Score=139.24 Aligned_cols=122 Identities=20% Similarity=0.254 Sum_probs=107.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
+.+++++|.+ +++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+.....
T Consensus 83 ~~~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~~-----------~~~~Givt~~dl~~~~~~~~~---- 145 (280)
T 3kh5_A 83 NEPVREIMEE--NVITLKENADIDEAIETFLTKNVGGAPIVNDE-----------NQLISLITERDVIRALLDKID---- 145 (280)
T ss_dssp TSBGGGTSBC--SCCCEETTCBHHHHHHHHHHTTCSEEEEECTT-----------CBEEEEEEHHHHHHHHGGGSC----
T ss_pred hhhHHHhcCC--CCEEECCCCCHHHHHHHHHhCCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHhhcCC----
Confidence 4689999998 89999999999999999999999999999987 899999999999876543110
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
...+++++|++++.++++++++.++.+.|.+++.+++||++
T Consensus 146 -----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---- 186 (280)
T 3kh5_A 146 -----------------------------------ENEVIDDYITRDVIVATPGERLKDVARTMVRNGFRRLPVVS---- 186 (280)
T ss_dssp -----------------------------------TTCBSGGGCBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEE----
T ss_pred -----------------------------------CCCCHHHHhCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEE----
Confidence 11357889999999999999999999999999999999994
Q ss_pred CCCCceEEEEeHHHhHHHHh
Q 007394 570 AGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++|+++...
T Consensus 187 --~~~~~Givt~~dl~~~~~ 204 (280)
T 3kh5_A 187 --EGRLVGIITSTDFIKLLG 204 (280)
T ss_dssp --TTEEEEEEEHHHHHHHHT
T ss_pred --CCEEEEEEEHHHHHHHHh
Confidence 589999999999998764
|
| >3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4.5e-14 Score=143.62 Aligned_cols=122 Identities=17% Similarity=0.240 Sum_probs=107.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
+.+++++|++ +++++.+++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.+....
T Consensus 92 ~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~~-----------~~lvGivt~~dl~~~~~~~~----- 153 (296)
T 3ddj_A 92 TTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-----------DKPVGIVTEREFLLLYKDLD----- 153 (296)
T ss_dssp TSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHGGGGGGSC-----
T ss_pred cccHHHhccC--CCEEEcCCCCHHHHHHHHHHcCCCEEEEEcCC-----------CcEEEEEeHHHHHHhhhccc-----
Confidence 5679999999 89999999999999999999999999999987 89999999999965432110
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
...+++++|++++.++++++++.++++.|.+++.+++||+|+
T Consensus 154 -----------------------------------~~~~v~~~m~~~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~--- 195 (296)
T 3ddj_A 154 -----------------------------------EIFPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD--- 195 (296)
T ss_dssp -----------------------------------CCCBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT---
T ss_pred -----------------------------------ccccHHHhhcCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC---
Confidence 013577888899999999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHh
Q 007394 570 AGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++|+++.+.
T Consensus 196 --~~~~~Givt~~dl~~~~~ 213 (296)
T 3ddj_A 196 --DNKVVGIVTVVNAIKQLA 213 (296)
T ss_dssp --TSCEEEEEEHHHHHHHHH
T ss_pred --CCEEEEEEEHHHHHHHHH
Confidence 799999999999998876
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.6e-13 Score=141.97 Aligned_cols=128 Identities=13% Similarity=0.146 Sum_probs=107.4
Q ss_pred cccccc---ccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 410 TLTVGE---LIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 410 ~~~v~d---iM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
..++++ +|.+ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+++.+......
T Consensus 181 ~~~v~~l~~~m~~--~~~~v~~~~~~~~~~~~m~~~~~~~~~Vvd~~-----------~~~~Giit~~dl~~~~~~~~~~ 247 (334)
T 2qrd_G 181 RVPLNQMTIGTWS--NLATASMETKVYDVIKMLAEKNISAVPIVNSE-----------GTLLNVYESVDVMHLIQDGDYS 247 (334)
T ss_dssp CCBGGGSSCSBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEETHHHHHHHTTSCGG
T ss_pred hCcHHHhCCcccC--CceEECCCCcHHHHHHHHHHcCCcEEEEEcCC-----------CcEEEEEEHHHHHHHhhccccc
Confidence 456778 5888 89999999999999999999999999999987 8999999999998765432100
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccc------cCCceecCCCCHHHHHHHHHHcCCcE
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN------TTPYTVIESMSVAKAMVLFRQVGLRH 560 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~------~~~~~v~~~~sl~~a~~~~~~~~~~~ 560 (605)
. ...+++++|+ +++.++.+++++.+++++|.+++.++
T Consensus 248 ~-------------------------------------~~~~v~~~m~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~ 290 (334)
T 2qrd_G 248 N-------------------------------------LDLSVGEALLKRPANFDGVHTCRATDRLDGIFDAIKHSRVHR 290 (334)
T ss_dssp G-------------------------------------GGSBHHHHHTTCCTTCCCCCEECTTCBHHHHHHHHHHSCCCE
T ss_pred c-------------------------------------ccCcHHHHHhcccccCCCCEEECCCCcHHHHHHHHHHcCCCE
Confidence 0 0124556666 47889999999999999999999999
Q ss_pred EEEccccccCCCCceEEEEeHHHhHHHHhhhh
Q 007394 561 LLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 561 lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~ 592 (605)
+||+|+ +|+++|+||++|+++++.++.
T Consensus 291 l~Vvd~-----~g~l~Giit~~dil~~~~~~~ 317 (334)
T 2qrd_G 291 LFVVDE-----NLKLEGILSLADILNYIIYDK 317 (334)
T ss_dssp EEEECT-----TCBEEEEEEHHHHHHHHHSCC
T ss_pred EEEECC-----CCeEEEEEeHHHHHHHHHhcc
Confidence 999998 799999999999999887643
|
| >3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog, transport protein; 3.20A {Synechocystis} PDB: 3q17_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=141.14 Aligned_cols=189 Identities=14% Similarity=0.197 Sum_probs=130.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccchhhHHHHH----HHHHHHhhhh-hccccccccCC
Q 007394 149 RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQ---KGKMHKLLLAL----SVSVFTSVCQ-YCLPFLADCKA 220 (605)
Q Consensus 149 ~~~~~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~~~----~~~~l~~~~~-~~~p~~~~~~~ 220 (605)
...++.+...+++|+++|+++.+|.++++++++++..... ..++..++.++ +++++.+.+. .+.|+.
T Consensus 26 ~~~~~l~l~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~l~~~~~p~a----- 100 (466)
T 3nd0_A 26 SLHPRTLVAAIVVGLITGVLGAGFKSAVNNMLQWRSQLAQILAPIPPLAWLVTALISGGMVALSFWLMKRFAPDT----- 100 (466)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCTHHHHHHHHHHHHHHHHHHHHHTTTCGGG-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHCCCc-----
Confidence 3455677888999999999999999999999998754311 11222222222 2222222121 222332
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCC
Q 007394 221 CDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300 (605)
Q Consensus 221 ~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~ 300 (605)
.| ++-+.++..++.. ..... .-.+..|++.+.+|+++|.+
T Consensus 101 -----------~G------------------------sGIp~v~~~l~g~--~~~~~---~~~~~~k~~~~~ltig~G~S 140 (466)
T 3nd0_A 101 -----------SG------------------------SGIPQIEGHLEGK--LPLVW---QRVLPIKLVGGFLSLGAGML 140 (466)
T ss_dssp -----------SB------------------------CSHHHHHHHTTSS--SCCCH---HHHHHHHHHHHHHHHHTTCS
T ss_pred -----------CC------------------------CCHHHHHHHHcCC--CCCch---HHHHHHHHHHHHHHHhcCCC
Confidence 11 1111223322221 11111 12345799999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc--c--hHHHHHHHHH
Q 007394 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL--L--LPITMIVLLI 375 (605)
Q Consensus 301 gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~--~--l~p~~~a~~~ 375 (605)
.|++.|++++||++|..+++.++.. ..+...+..+|++|.+|+++++|++++++.+|.. +++. . +.|+++++++
T Consensus 141 ~GrEGP~vqiGa~ig~~l~~~~~~~-~~~~r~ll~aGaAAGlaAaF~APlaGvlFalE~l~~~~~~~~~~~~~~~~as~~ 219 (466)
T 3nd0_A 141 AGFEGPTIQMGGSIGQMTGGWFKAT-QENQRILIAVGAGAGLATAFNAPLAGVALIGEEMHPRFRSQTLAYHSLLFGCVM 219 (466)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHSSSCCCCSSCCTTHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHcCCC-hhHHHHHHHHHHHHHHHHHhCCchHHHHHHHHhhhccccHHHHHHHHHHHHHHH
Confidence 9999999999999999999998532 2345789999999999999999999999999965 5553 2 5699999999
Q ss_pred HHHHHhhc
Q 007394 376 AKTVGDSF 383 (605)
Q Consensus 376 a~~v~~~l 383 (605)
++.+++.+
T Consensus 220 a~~v~~~~ 227 (466)
T 3nd0_A 220 ATIILRMI 227 (466)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999876
|
| >2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-14 Score=141.53 Aligned_cols=117 Identities=21% Similarity=0.278 Sum_probs=88.7
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++++++|++ +++++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|++..+.
T Consensus 1 m~v~~im~~--~~~~v~~~~~~~~a~~~~~~~~~~~~pV~d~~-----------~~~~Giv~~~dl~~~~~--------- 58 (282)
T 2yzq_A 1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKE-----------GKLVGIISVKRILVNPD--------- 58 (282)
T ss_dssp CBHHHHSEE--SCCCEESSCC------------CCEEEEECTT-----------CCEEEEEESSCC--------------
T ss_pred CchHHhccC--CCeEECCCCcHHHHHHHHHHcCCCeEEEEcCC-----------CcEEEEEEHHHHHhhhc---------
Confidence 478999998 89999999999999999999999999999976 89999999999864321
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
..+++++|.+++.++++++++.++++.|.+++.+.+||+|+
T Consensus 59 -----------------------------------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd~---- 99 (282)
T 2yzq_A 59 -----------------------------------EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---- 99 (282)
T ss_dssp ----------------------------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred -----------------------------------cCCHHHHcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC----
Confidence 12478889888999999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHH-HHh
Q 007394 571 GVSPVVGILTRQDLRA-FNI 589 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~-~~~ 589 (605)
+|+++|+||++|+++ .+.
T Consensus 100 -~~~~~Giit~~di~~~~~~ 118 (282)
T 2yzq_A 100 -KGKPVGILTVGDIIRRYFA 118 (282)
T ss_dssp -TSCEEEEEEHHHHHHHTTT
T ss_pred -CCEEEEEEEHHHHHHHHHh
Confidence 789999999999998 654
|
| >4ene_A CLC-EC1, H(+)/CL(-) exchange transporter CLCA; membrane protein, coupled ION transporter, cell membrane, TR protein; HET: DMU MAL; 2.40A {Escherichia coli k-12} PDB: 1ots_A 2fee_A 2h2p_A 2exw_A 1kpk_A 2exy_A 2fed_A 2fec_A 1otu_A 2htl_A 2ht2_A 3ejy_A 1ott_A 2h2s_A 4fg6_A 2ht4_A 4ftp_A 3ejz_A 2ht3_A 2htk_A ... | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=137.58 Aligned_cols=188 Identities=12% Similarity=0.090 Sum_probs=130.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---ccchhhHHH----HHHHHHHHhhhh-hccccccccCCC
Q 007394 150 YHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNLINQ---KGKMHKLLL----ALSVSVFTSVCQ-YCLPFLADCKAC 221 (605)
Q Consensus 150 ~~~~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~~~~l~~~~~-~~~p~~~~~~~~ 221 (605)
...+.+...+++|+++|+++.+|.++++++++++...-. ..++..++. +.+++++++.+. .+.|+.
T Consensus 16 ~~~~~~~~~~liGi~~Gl~~~~f~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~a------ 89 (446)
T 4ene_A 16 TPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEA------ 89 (446)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHhCccc------
Confidence 445777889999999999999999999999998754311 112222222 222333333222 223433
Q ss_pred CCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCc
Q 007394 222 DPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPS 301 (605)
Q Consensus 222 ~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~g 301 (605)
.|. +.. .++..+++. ..... .-....|++.+.+|+++|.+.
T Consensus 90 ----------~Gs------------Gip------------~v~~~l~~~--~~~~~---~r~~~~k~~~~~lti~~G~s~ 130 (446)
T 4ene_A 90 ----------GGS------------GIP------------EIEGALEDQ--RPVRW---WRVLPVKFFGGLGTLGGGMVL 130 (446)
T ss_dssp ----------SSC------------SHH------------HHHHHHHTC--SCCCH---HHHHHHHHHHHHHHHHTTCSC
T ss_pred ----------CCC------------CHH------------HHHHHHhCC--Cccch---HHHHHHHHHHHHHHHhcCCcc
Confidence 111 111 122222221 12221 123457999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHhhcccCCCcH-HHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc----chHHHHHHHHH
Q 007394 302 GLFLPIILMGSAYGRLLGMAMGSYTNIDQG-LYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL----LLPITMIVLLI 375 (605)
Q Consensus 302 G~f~Psl~iGa~~G~~~g~~~~~~~~~~~~-~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~----~l~p~~~a~~~ 375 (605)
|++.|+.++||++|..+++.++.. ..+.. .+..+|++|.+++++++|++++++.+|.. +++. .+.|+++++++
T Consensus 131 GrEGP~vqiGa~ig~~~~~~~~~~-~~~~r~~ll~aGaaAG~aaaF~aPlaGvlFalE~l~~~~~~~~~~~~~~~~as~~ 209 (446)
T 4ene_A 131 GREGPTVQIGGNIGRMVLDIFRLK-GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIM 209 (446)
T ss_dssp BSHHHHHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTSCSSSCCCCCHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHhhcchhHHHHHHHHHHHHH
Confidence 999999999999999999998531 23344 89999999999999999999999999976 4443 37889999999
Q ss_pred HHHHHhhc
Q 007394 376 AKTVGDSF 383 (605)
Q Consensus 376 a~~v~~~l 383 (605)
++.+++.+
T Consensus 210 a~~v~~~~ 217 (446)
T 4ene_A 210 STIMYRIF 217 (446)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHH
Confidence 99999877
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.42 E-value=9.1e-13 Score=136.11 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=111.4
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
.+.+.+|+|+|.++.+++++++++++.++++.|.+++++++||+|++. ++++|+++.+|++..+......
T Consensus 31 ~l~~~~v~dim~p~~~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d~~~----------~~~vGivt~~Dll~~l~~~~~~ 100 (330)
T 2v8q_E 31 FMKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK----------QSFVGMLTITDFINILHRYYKS 100 (330)
T ss_dssp HHHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT----------TEEEEEEEHHHHHHHHHHHHHH
T ss_pred HHHcCcHhhhccCCCcEEEEeCCCcHHHHHHHHHHcCCcEEEEEeCCC----------CeEEEEEEHHHHHHHHHHHHhc
Confidence 356789999994433899999999999999999999999999998741 5899999999998766431100
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
.+.... . .......++. ..++++|.+++.++++++++.++++.|.+++.+++||+|+
T Consensus 101 ~~~~~~---~-l~~~~~~~~~-------------------~~~~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~ 157 (330)
T 2v8q_E 101 ALVQIY---E-LEEHKIETWR-------------------EVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP 157 (330)
T ss_dssp HTTTCC---C-GGGCBHHHHH-------------------HHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT
T ss_pred cccchh---H-HhhccHHHHH-------------------HHHhhcccCCceEeCCCCCHHHHHHHHHHCCCCeEEEEeC
Confidence 000000 0 0001111111 1356889999999999999999999999999999999984
Q ss_pred cccCCCCceEEEEeHHHhHHHHhh
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++|+++|+||.+|+++....
T Consensus 158 ----~~~~~~Givt~~dl~~~~~~ 177 (330)
T 2v8q_E 158 ----ESGNTLYILTHKRILKFLKL 177 (330)
T ss_dssp ----TTCCEEEEECHHHHHHHHHH
T ss_pred ----CCCcEEEEEcHHHHHHHHHH
Confidence 13889999999999987754
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=3.7e-13 Score=146.53 Aligned_cols=118 Identities=14% Similarity=0.208 Sum_probs=103.7
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecC--CCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDE--GVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~--~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
+.++.|.+ +++++++++++.|+.+.|.+++++++||+|+ + ++++|+|+.+|+.. ..
T Consensus 114 ~~~~~m~~--d~v~l~~~~tv~ea~~~m~~~~~s~~pVvd~g~~-----------~~lvGiVt~rDl~~---~~------ 171 (511)
T 3usb_A 114 RSESGVIS--DPFFLTPEHQVYDAEHLMGKYRISGVPVVNNLDE-----------RKLVGIITNRDMRF---IQ------ 171 (511)
T ss_dssp TSSSCSSS--SCCCBCTTSBHHHHHHHHHHHCCSEEEEESCTTT-----------CBEEEEEEHHHHTT---CC------
T ss_pred cccccccc--CCEEECCCCCHHHHHHHHHHcCCcEEEEEecCCC-----------CEEEEEEEehHhhh---hc------
Confidence 45677877 8899999999999999999999999999997 6 89999999999942 00
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc-CCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
+...+++++|++ ++.++++++++.+++++|.+++.+.+||||+
T Consensus 172 ----------------------------------~~~~~V~~vM~~~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe-- 215 (511)
T 3usb_A 172 ----------------------------------DYSIKISDVMTKEQLITAPVGTTLSEAEKILQKYKIEKLPLVDN-- 215 (511)
T ss_dssp ----------------------------------CSSSBHHHHCCCCCCCCEETTCCHHHHHHHHHHHTCSEEEEECT--
T ss_pred ----------------------------------cCCCcHHHhcccCCCEEECCCCCHHHHHHHHHHcCCCEEEEEeC--
Confidence 012357888887 8999999999999999999999999999998
Q ss_pred cCCCCceEEEEeHHHhHHHHhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|+++....
T Consensus 216 ---~g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 216 ---NGVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp ---TSBEEEEEEHHHHHHHHHC
T ss_pred ---CCCEeeeccHHHHHHhhhc
Confidence 8999999999999998764
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.8e-13 Score=148.42 Aligned_cols=117 Identities=17% Similarity=0.264 Sum_probs=89.8
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 491 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~ 491 (605)
+++++|.+ +++++++++++.++.+.|.+++++++||+|++ ++++|+|+.+|+.. . .
T Consensus 90 ~~~~~m~~--d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~~-----------~~lvGiVt~rDL~~---~----~---- 145 (496)
T 4fxs_A 90 IFEAGVVT--HPVTVRPEQTIADVMELTHYHGFAGFPVVTEN-----------NELVGIITGRDVRF---V----T---- 145 (496)
T ss_dssp HCCC--CB--CCCCBCSSSBHHHHHHHHTSSCCCEEEEECSS-----------SBEEEEEEHHHHTT---C----C----
T ss_pred cccccccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEccC-----------CEEEEEEEHHHHhh---c----c----
Confidence 45788988 89999999999999999999999999999987 89999999999941 0 0
Q ss_pred chhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccc-c-CCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 492 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-T-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
+...+++++|+ + ++.++++++++.+++++|.+++++.+||||+
T Consensus 146 --------------------------------~~~~~v~diM~p~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe--- 190 (496)
T 4fxs_A 146 --------------------------------DLTKSVAAVMTPKERLATVKEGATGAEVQEKMHKARVEKILVVND--- 190 (496)
T ss_dssp --------------------------------CTTSBGGGTSEEGGGCCEEECC----CGGGTCC---CCCEEEECT---
T ss_pred --------------------------------cCCCcHHHHhcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---
Confidence 01246889998 4 5899999999999999999999999999999
Q ss_pred CCCCceEEEEeHHHhHHHHh
Q 007394 570 AGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++|+++...
T Consensus 191 --~G~l~GiIT~~DIl~~~~ 208 (496)
T 4fxs_A 191 --EFQLKGMITAKDFHKAES 208 (496)
T ss_dssp --TSBCCEEECCC-----CC
T ss_pred --CCCEEEeehHhHHHHhhc
Confidence 899999999999998654
|
| >2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=133.24 Aligned_cols=147 Identities=18% Similarity=0.194 Sum_probs=108.2
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
+++.+|+|+|+++.+++++++++++.++++.|.+++++.+||+|++. ++++|+++.+|++..+.......
T Consensus 19 l~~~~v~dim~~~~~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d~~~----------~~~vGiv~~~Dl~~~~~~~~~~~ 88 (334)
T 2qrd_G 19 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA----------NKFAGLLTMADFVNVIKYYYQSS 88 (334)
T ss_dssp HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT----------TEEEEEECHHHHHHHHHHHHHHC
T ss_pred HhcCchhhhCCCCCCEEEEcCCCCHHHHHHHHHHcCCeEEEEEeCCC----------CeEEEEEEHHHHHHHHHHHhhcc
Confidence 55689999998866789999999999999999999999999998742 69999999999987654311000
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCC--ceecCCCCHHHHHHHHHHcCCcEEEEcc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP--YTVIESMSVAKAMVLFRQVGLRHLLVVP 565 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~--~~v~~~~sl~~a~~~~~~~~~~~lpVVd 565 (605)
.. .+...........++.+ -++++|.+++ .++++++++.++++.|.+++.+++||+|
T Consensus 89 -~~-~~~~~~~~~~~~~~i~~-------------------~l~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd 147 (334)
T 2qrd_G 89 -SF-PEAIAEIDKFRLLGLRE-------------------VERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLID 147 (334)
T ss_dssp -SC-GGGGGGGGSCBHHHHHH-------------------HHHHHTCSCSSCCCBCTTSBHHHHHHHHHHSCCSEEEEEE
T ss_pred -CC-ccHHHHHhhhchhhHHH-------------------HHHhhccCCCceeeeCCCCcHHHHHHHHHHCCceEEEEEe
Confidence 00 00000000111111110 0245677777 8999999999999999999999999998
Q ss_pred ccccCCCC-c----eEEEEeHHHhHHHHhh
Q 007394 566 KYEAAGVS-P----VVGILTRQDLRAFNIL 590 (605)
Q Consensus 566 ~~~~~~~g-~----lvGiITr~Dll~~~~~ 590 (605)
+ ++ + ++|+||.+|+++....
T Consensus 148 ~-----~~~~~~~~~~Givt~~dl~~~~~~ 172 (334)
T 2qrd_G 148 V-----DGETGSEMIVSVLTQYRILKFISM 172 (334)
T ss_dssp E-----ETTTTEEEEEEEEEHHHHHHHHHH
T ss_pred C-----CCCcCccceEEEeeHHHHHHHHHh
Confidence 7 44 3 9999999999987754
|
| >2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* | Back alignment and structure |
|---|
Probab=99.36 E-value=7.9e-13 Score=136.57 Aligned_cols=132 Identities=14% Similarity=0.136 Sum_probs=103.3
Q ss_pred cccccc--cc-cCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 411 LTVGEL--ID-AKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 411 ~~v~di--M~-~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
.+++++ |. + ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+++.+.......
T Consensus 190 ~~v~~~~v~~~~--~~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd~~-----------~~l~Giit~~dl~~~~~~~~~~~ 256 (330)
T 2v8q_E 190 KSLEELQIGTYA--NIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----------GRVVDIYSKFDVINLAAEKTYNN 256 (330)
T ss_dssp SBHHHHTCSBCS--SCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------SBEEEEEEGGGTGGGGGSSCCCC
T ss_pred CCHHHhcccCcC--CceEECCCCCHHHHHHHHHHcCCCeEEEECCC-----------CcEEEEEEHHHHHHHHhcccccc
Confidence 445555 54 5 78899999999999999999999999999987 89999999999976433211000
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...++.+++. .++.|.+++.++++++++.+++++|.+++.+++||+|+
T Consensus 257 -----------~~~~v~~~~~--------------------~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd~- 304 (330)
T 2v8q_E 257 -----------LDVSVTKALQ--------------------HRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE- 304 (330)
T ss_dssp -----------CSSBHHHHGG--------------------GCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT-
T ss_pred -----------ccCcHHHHHh--------------------ccccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEcC-
Confidence 0011222221 12335688999999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++++.++
T Consensus 305 ----~g~l~Giit~~Dil~~~~~~ 324 (330)
T 2v8q_E 305 ----HDVVKGIVSLSDILQALVLT 324 (330)
T ss_dssp ----TSBEEEEEEHHHHHHHHHSS
T ss_pred ----CCcEEEEEeHHHHHHHHHhh
Confidence 79999999999999988754
|
| >3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C | Back alignment and structure |
|---|
Probab=99.36 E-value=2.2e-12 Score=132.69 Aligned_cols=129 Identities=6% Similarity=0.047 Sum_probs=101.5
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCc--eEEEeEeHHHHHHHHhhchhhhhc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVAT--ELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~--~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
++.++|.+ +++++++++++.++++.|.+++++.+||+|++ +..+ +++|+++.+|+++.+......
T Consensus 115 ~~~~~~~~--~~v~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--------~~~~~~~l~Givt~~di~~~l~~~~~~--- 181 (323)
T 3t4n_C 115 RALGVDQL--DTASIHPSRPLFEACLKMLESRSGRIPLIDQD--------EETHREIVVSVLTQYRILKFVALNCRE--- 181 (323)
T ss_dssp HHTTC------CCCBCTTSBHHHHHHHHHHHTCSEEEEEEEC--------TTTCCEEEEEEEEHHHHHHHHHHHCGG---
T ss_pred HHhCCCCC--CceEeCCCCcHHHHHHHHHhCCeeEEEEEecC--------CCCCccceEEEecHHHHHHHHHhcCCc---
Confidence 34556677 89999999999999999999999999999986 0111 399999999998866431100
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccc---cccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPL---TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i---m~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
.. ....+++++ |++++.++.+++++.++.+.|.+++.+++||+|+
T Consensus 182 --------------~~------------------~~~~~v~~~~~~m~~~~~~v~~~~~~~~~~~~m~~~~~~~~pVvd~ 229 (323)
T 3t4n_C 182 --------------TH------------------FLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE 229 (323)
T ss_dssp --------------GG------------------GCCSBGGGTTCSBCTTCCCBCTTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred --------------hh------------------hhhCcHHHcCCCCCCCcEEECCCCcHHHHHHHHHHcCCCEEEEECC
Confidence 00 011356777 8899999999999999999999999999999998
Q ss_pred cccCCCCceEEEEeHHHhHHHHhh
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|+++...+
T Consensus 230 -----~~~~~Giit~~dl~~~~~~ 248 (323)
T 3t4n_C 230 -----NGYLINVYEAYDVLGLIKG 248 (323)
T ss_dssp -----TCBEEEEEETTHHHHHHHT
T ss_pred -----CCeEEEEEeHHHHHHHHhh
Confidence 7999999999999987654
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.2e-12 Score=139.47 Aligned_cols=117 Identities=14% Similarity=0.191 Sum_probs=104.2
Q ss_pred cccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeec--CCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 413 VGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLD--EGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 413 v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd--~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++++|.+ +++++++++++.++.+.|.+++++.+||+| ++ ++++|+|+.+|++.. . .
T Consensus 92 ~~~im~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~-----------~~lvGivt~~Dl~~~--~-~------ 149 (491)
T 1zfj_A 92 SENGVII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETLAN-----------RKLVGIITNRDMRFI--S-D------ 149 (491)
T ss_dssp HTTTTSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTT-----------CBEEEEEEHHHHHHC--S-C------
T ss_pred HHhcCcC--CCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCC-----------CEEEEEEEHHHHhhh--c-c------
Confidence 4689998 899999999999999999999999999999 66 899999999999541 0 0
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc-CCceecCCCCHHHHHHHHHHcCCcEEEEcccccc
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEA 569 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~-~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~ 569 (605)
...+++++|++ ++.++++++++.+++++|.+++.+.+||||+
T Consensus 150 ----------------------------------~~~~v~~im~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd~--- 192 (491)
T 1zfj_A 150 ----------------------------------YNAPISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN--- 192 (491)
T ss_dssp ----------------------------------SSSBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT---
T ss_pred ----------------------------------CCCcHHHHcCCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC---
Confidence 11368899998 8999999999999999999999999999998
Q ss_pred CCCCceEEEEeHHHhHHHHhh
Q 007394 570 AGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 570 ~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++++|+||++|+++...+
T Consensus 193 --~g~lvGivt~~Dil~~~~~ 211 (491)
T 1zfj_A 193 --SGRLSGLITIKDIEKVIEF 211 (491)
T ss_dssp --TSBEEEEEEHHHHHHHHHC
T ss_pred --CCcEEEEEEHHHHHHHHhc
Confidence 8999999999999998764
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.6e-13 Score=143.60 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=0.4
Q ss_pred cccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchh
Q 007394 415 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE 494 (605)
Q Consensus 415 diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~ 494 (605)
..|.. +++++.|+.|+.|+.+++.+++++++||+|+. ..+++|+|+||.+|+... +
T Consensus 142 ~g~i~--dPvtl~P~~Tv~da~~l~~~~~isgvpVvd~g--------~~~~kLvGIvT~RD~rf~--d------------ 197 (556)
T 4af0_A 142 NGFIT--DPLCLGPDATVGDVLEIKAKFGFCGVPITETG--------EPDSKLLGIVTGRDVQFQ--D------------ 197 (556)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred cCccC--CCeEcCCCCCHHHHHHHHHHhCCCcccccccc--------CcCCEEEEEEeccccccc--c------------
Confidence 45666 78999999999999999999999999999973 223899999999998320 0
Q ss_pred HHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCc
Q 007394 495 WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 574 (605)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~ 574 (605)
...+++++|++++++++++.+++||.++|.+++++.+||||+ +++
T Consensus 198 ------------------------------~~~~V~evMT~~lvt~~~~~~leeA~~iL~~~kieklpVVd~-----~g~ 242 (556)
T 4af0_A 198 ------------------------------AETPIKSVMTTEVVTGSSPITLEKANSLLRETKKGKLPIVDS-----NGH 242 (556)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------cceEhhhhcccceEEecCCCCHHHHHHHHHHccccceeEEcc-----CCc
Confidence 113588999999999999999999999999999999999999 899
Q ss_pred eEEEEeHHHhHHHHh
Q 007394 575 VVGILTRQDLRAFNI 589 (605)
Q Consensus 575 lvGiITr~Dll~~~~ 589 (605)
++|+||++|+.+...
T Consensus 243 LvGlIT~kDi~k~~~ 257 (556)
T 4af0_A 243 LVSLVARSDLLKNQN 257 (556)
T ss_dssp ---------------
T ss_pred EEEEEEechhhhhhh
Confidence 999999999998654
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-13 Score=146.88 Aligned_cols=117 Identities=17% Similarity=0.225 Sum_probs=3.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+++++|.+ +++++++++++.|+.+.|.+++++.+||+| + ++++|+|+.+|+....
T Consensus 88 k~~~~~m~~--~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd-~-----------g~lvGIVt~rDl~~~~---------- 143 (490)
T 4avf_A 88 KKHETAIVR--DPVTVTPSTKIIELLQMAREYGFSGFPVVE-Q-----------GELVGIVTGRDLRVKP---------- 143 (490)
T ss_dssp HHCCC---------------------------------------------------------------------------
T ss_pred cccccCccc--CceEeCCCCcHHHHHHHHHHhCCCEEEEEE-C-----------CEEEEEEEhHHhhhcc----------
Confidence 356788988 899999999999999999999999999999 5 8999999999994210
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccc-c-CCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTN-T-TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~-~-~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
+...+++++|+ + ++.++++++++.+++++|.+++++.+||||+
T Consensus 144 ---------------------------------~~~~~V~~vMtp~~~~vtv~~~~~l~ea~~~m~~~~i~~lpVVDe-- 188 (490)
T 4avf_A 144 ---------------------------------NAGDTVAAIMTPKDKLVTAREGTPLEEMKAKLYENRIEKMLVVDE-- 188 (490)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------ccCCcHHHHhccCCCCEEECCCCcHHHHHHHHHHcCCCEEEEEcC--
Confidence 01235889998 4 6899999999999999999999999999998
Q ss_pred cCCCCceEEEEeHHHhHHHHh
Q 007394 569 AAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++|+++...
T Consensus 189 ---~g~lvGiIT~~Dil~~~~ 206 (490)
T 4avf_A 189 ---NFYLRGLVTFRDIEKAKT 206 (490)
T ss_dssp ---------------------
T ss_pred ---CCcEEEEEehHHhhhhcc
Confidence 899999999999999764
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.6e-13 Score=146.96 Aligned_cols=120 Identities=22% Similarity=0.262 Sum_probs=7.7
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+++++|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+|+.+|+.+. . .
T Consensus 95 ~~~~~iM~~--~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~-----------~~lvGivt~~Dl~~~--~-~------ 152 (494)
T 1vrd_A 95 KKTENGIIY--DPITVTPDMTVKEAIDLMAEYKIGGLPVVDEE-----------GRLVGLLTNRDVRFE--K-N------ 152 (494)
T ss_dssp HTC-----------------------------------------------------------------------------
T ss_pred hhHhhcCcc--CCeEECCCCCHHHHHHHHHHcCceEEEEEcCC-----------CEEEEEEEHHHHHhh--c-C------
Confidence 357889998 89999999999999999999999999999987 899999999999641 0 0
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
...+++++|++ ++.++++++++.+++++|.+++++.+||||+
T Consensus 153 ----------------------------------~~~~v~~im~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~-- 196 (494)
T 1vrd_A 153 ----------------------------------LSKKIKDLMTPREKLIVAPPDISLEKAKEILHQHRIEKLPLVSK-- 196 (494)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------------------------------CCCcHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCcEEEEEcC--
Confidence 01358889988 9999999999999999999999999999998
Q ss_pred cCCCCceEEEEeHHHhHHHHhhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++....+
T Consensus 197 ---~g~lvGiIt~~Dll~~~~~~ 216 (494)
T 1vrd_A 197 ---DNKLVGLITIKDIMSVIEHP 216 (494)
T ss_dssp ---------------CHHHHTCT
T ss_pred ---CCeEEEEEEHHHHHhhhccc
Confidence 89999999999999987653
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=4.4e-13 Score=146.06 Aligned_cols=126 Identities=13% Similarity=0.149 Sum_probs=4.3
Q ss_pred cccccccc-cccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 409 RTLTVGEL-IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 409 ~~~~v~di-M~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
++++..++ |++ +++++++++++.|+++.|.+++++.+||+|++ ...++++|+|+.+|++.. ..
T Consensus 94 ~~V~~~e~gM~~--~~~~v~~~~tv~eal~~m~~~~~s~~pVvd~~--------~~~g~lvGiVt~~Dl~~~--~~---- 157 (503)
T 1me8_A 94 HAVKNFKAGFVV--SDSNVKPDQTFADVLAISQRTTHNTVAVTDDG--------TPHGVLLGLVTQRDYPID--LT---- 157 (503)
T ss_dssp HHHHTTTC------------------------------------------------------------------------
T ss_pred hhhhhcccCccc--CCeEECCCCcHHHHHHHHHHcCceEEEEEECC--------CcCCeEEEEEEHHHHHhh--hc----
Confidence 34445566 988 89999999999999999999999999999873 012689999999999642 00
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccC--CceecCCCCHHHHHHHHHHcCCcEEEEcc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVP 565 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~--~~~v~~~~sl~~a~~~~~~~~~~~lpVVd 565 (605)
+...+++++|+++ +.++++++++.+++++|.+++++.+||||
T Consensus 158 ------------------------------------~~~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD 201 (503)
T 1me8_A 158 ------------------------------------QTETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIID 201 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------------------------cccCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEc
Confidence 0113588899887 99999999999999999999999999999
Q ss_pred ccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 566 KYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 566 ~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+ +|+++|+||++|+++.+...
T Consensus 202 e-----~g~lvGiIT~~Dil~~~~~~ 222 (503)
T 1me8_A 202 D-----DQHLRYIVFRKDYDRSQVCH 222 (503)
T ss_dssp -------------------------C
T ss_pred C-----CCeEEEEEEecHHHHhhhcc
Confidence 8 89999999999999987653
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=6.8e-13 Score=145.38 Aligned_cols=179 Identities=14% Similarity=0.194 Sum_probs=95.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcCCcHHHHHHHhcCCCCCCC--CCCcc---c-cccccccccccCCCee
Q 007394 351 SLCVIFLELTNNLLLLPITMIVLLIAKTVGDSFNPSIYEIILELKGLPFLDA--HPEPW---M-RTLTVGELIDAKPPVI 424 (605)
Q Consensus 351 s~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l~~~iy~~~l~~~g~~~l~~--~~~~~---l-~~~~v~diM~~~~~v~ 424 (605)
+.+.+..|+|+++.+.+|++.+.+-.. -...+.+......+..+++. .++.. . .-.+++++|.+ +++
T Consensus 47 ~~v~l~~eLt~~~~~~iP~vsa~md~~-----t~~~la~~ia~~gg~gii~~~~t~e~~~~~v~~v~~~~~im~~--~~~ 119 (514)
T 1jcn_A 47 DEVDLTSALTRKITLKTPLISSPMDTV-----TEADMAIAMALMGGIGFIHHNCTPEFQANEVRKVKNFEQGFIT--DPV 119 (514)
T ss_dssp GGCBCCEESSSSCEESSCEEECCCTTT-----CSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHTCCTTSCS--SCC
T ss_pred ceeEEEeeccCCeeEeceEEEEehhhh-----hhhhHHHHHHhcCCeeEEecCCCHHHHHHHHHhhhhhhhcccc--CCE
Confidence 345666788998888777765411110 01123333333333322221 00100 0 12367899998 889
Q ss_pred EEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHHHhhhcchh
Q 007394 425 TLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWV 504 (605)
Q Consensus 425 ~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 504 (605)
++++++++.++.+.|.+++++.+||+|++ ..+++++|+|+.+|+......
T Consensus 120 ~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--------~~~~~lvGiVt~~Dl~~~~~~---------------------- 169 (514)
T 1jcn_A 120 VLSPSHTVGDVLEAKMRHGFSGIPITETG--------TMGSKLVGIVTSRDIDFLAEK---------------------- 169 (514)
T ss_dssp CCCC-----------------CEESCC----------------CCEECTTTTC---------------------------
T ss_pred EECCCCCHHHHHHHHHhcCCCEEEEEeCC--------CcCCEEEEEEEHHHHHhhhhc----------------------
Confidence 99999999999999999999999999972 001799999999998542100
Q ss_pred HhhhhcCcccccccChhhhhhhccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHH
Q 007394 505 ELAEREGKIEEVAVTSEEMEMYIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQ 582 (605)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~ 582 (605)
+...+++++|++ ++.++++++++.+++++|.+++.+.+||||+ +|+++|+||++
T Consensus 170 -------------------~~~~~v~~vm~~~~~~~tv~~~~~l~ea~~~m~~~~~~~lpVVd~-----~g~lvGiIt~~ 225 (514)
T 1jcn_A 170 -------------------DHTTLLSEVMTPRIELVVAPAGVTLKEANEILQRSKKGKLPIVND-----CDELVAIIART 225 (514)
T ss_dssp ------------------------------CCBCCCCEETTCCSTTTTTHHHHHTCSCCCEESS-----SSCCC----CC
T ss_pred -------------------cCCCCHHHHhCCCCCCeEECCCCCHHHHHHHHHHcCCCcccEECC-----CCeEEEEEEHH
Confidence 011358889998 9999999999999999999999999999998 89999999999
Q ss_pred HhHHHHhh
Q 007394 583 DLRAFNIL 590 (605)
Q Consensus 583 Dll~~~~~ 590 (605)
|+++....
T Consensus 226 Dll~~~~~ 233 (514)
T 1jcn_A 226 DLKKNRDY 233 (514)
T ss_dssp CCSSCCCC
T ss_pred HHHHHhhC
Confidence 99987653
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=1.1e-11 Score=134.64 Aligned_cols=114 Identities=25% Similarity=0.322 Sum_probs=2.1
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 491 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~ 491 (605)
+.++.|.+ +++++++++++.++.+.|.+++++.+||+|+ ++++|+|+.+|+.. +
T Consensus 94 ~~~~~m~~--~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd~------------~~lvGivt~~Dl~~---~--------- 147 (486)
T 2cu0_A 94 RAERLIVE--DVITIAPDETVDFALFLMEKHGIDGLPVVED------------EKVVGIITKKDIAA---R--------- 147 (486)
T ss_dssp TCC-----------------------------------------------------------------------------
T ss_pred chhhcccc--CceEECCCCCHHHHHHHHHHcCCcEEEEEEC------------CEEEEEEEHHHhcc---C---------
Confidence 45678988 8999999999999999999999999999987 68999999999853 1
Q ss_pred chhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCC
Q 007394 492 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG 571 (605)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~ 571 (605)
...+++++|++++.++++++++.+++++|.+++.+.+||||+
T Consensus 148 ---------------------------------~~~~v~~im~~~~~~v~~~~~l~eal~~m~~~~~~~lpVVde----- 189 (486)
T 2cu0_A 148 ---------------------------------EGKLVKELMTKEVITVPESIEVEEALKIMIENRIDRLPVVDE----- 189 (486)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------CCCCHHHHccCCCeEECCcCcHHHHHHHHHHcCCCEEEEEec-----
Confidence 013578889889999999999999999999999999999998
Q ss_pred CCceEEEEeHHHhHHHHh
Q 007394 572 VSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 572 ~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++|+++...
T Consensus 190 ~g~lvGiiT~~Dil~~~~ 207 (486)
T 2cu0_A 190 RGKLVGLITMSDLVARKK 207 (486)
T ss_dssp -----------------C
T ss_pred CCeEEEEEEHHHHHHhhh
Confidence 799999999999999754
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.4e-09 Score=80.88 Aligned_cols=46 Identities=13% Similarity=0.313 Sum_probs=42.3
Q ss_pred eeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 007394 423 VITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480 (605)
Q Consensus 423 v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l 480 (605)
++++++++++.|+.+.|.+++++++||+|+ ++++|++|.+|+.+.+
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~------------~~lvGIvT~~Di~~~~ 47 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG------------DEILGVVTERDILDKV 47 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET------------TEEEEEEEHHHHHHHT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC------------CEEEEEEEHHHHHHHH
Confidence 678999999999999999999999999986 7999999999997643
|
| >4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus} | Back alignment and structure |
|---|
Probab=98.62 E-value=4.1e-08 Score=90.87 Aligned_cols=58 Identities=17% Similarity=0.167 Sum_probs=54.4
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHH
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~ 588 (605)
.++++++|++++.++.+++++.+|+++|.+++++++||+|+ +|+++|+||.+|+++..
T Consensus 17 ~~~V~diM~~~v~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-----~g~lvGiit~~Dll~~~ 74 (170)
T 4esy_A 17 QVPIRDILTSPVVTVREDDTLDAVAKTMLEHQIGCAPVVDQ-----NGHLVGIITESDFLRGS 74 (170)
T ss_dssp TSBGGGGCCSCCCCEETTSBHHHHHHHHHHTTCSEEEEECT-----TSCEEEEEEGGGGGGGT
T ss_pred CCCHHHhcCCCCcEECCcCcHHHHHHHHHHcCCeEEEEEcC-----CccEEEEEEHHHHHHHH
Confidence 36799999999999999999999999999999999999998 89999999999998754
|
| >1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=6.6e-08 Score=93.09 Aligned_cols=119 Identities=13% Similarity=0.097 Sum_probs=54.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhc
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEK 489 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~ 489 (605)
+.+++++|++ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|+++.+.....
T Consensus 71 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~lvGiit~~Dil~~~~~~~~---- 133 (213)
T 1vr9_A 71 DSSVFNKVSL--PDFFVHEEDNITHALLLFLEHQEPYLPVVDEE-----------MRLKGAVSLHDFLEALIEALA---- 133 (213)
T ss_dssp TSBSGGGCBC--TTCCEETTSBHHHHHHHHHHCCCSEEEEECTT-----------CBEEEEEEHHHHHHHHHHSCC----
T ss_pred CCcHHHHccC--CCEEECCCCcHHHHHHHHHHhCCCEEEEEcCC-----------CEEEEEEEHHHHHHHHHHHhc----
Confidence 3469999998 89999999999999999999999999999987 899999999999876543110
Q ss_pred ccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccC-CceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 490 RRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTT-PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~-~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
..+.+.+- +.+.....++.++.++|.+++.+.++|++..+
T Consensus 134 ---------------------------------------~~~~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~l~V~~~~~ 174 (213)
T 1vr9_A 134 ---------------------------------------MDVPGIRFSVLLEDKPGELRKVVDALALSNINILSVITTRS 174 (213)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------------------------CCCCcEEEEEEeCCCCccHHHHHHHHHHCCCcEEEEEEEec
Confidence 00111110 01112334599999999999999999986522
Q ss_pred cCCCCceEEEEeHHHh
Q 007394 569 AAGVSPVVGILTRQDL 584 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dl 584 (605)
..+..+++.-|+..|+
T Consensus 175 ~~~~~~v~~~v~~~~~ 190 (213)
T 1vr9_A 175 GDGKREVLIKVDAVDE 190 (213)
T ss_dssp ----------------
T ss_pred CCCEEEEEEEEccCCH
Confidence 2223334444444343
|
| >3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-07 Score=73.11 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=43.7
Q ss_pred CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 537 PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 537 ~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+.++.|++++.||.++|.+++++++||+|+ |+++||||.+|+++....
T Consensus 2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d~------~~lvGIvT~~Di~~~~~~ 49 (70)
T 3ghd_A 2 AIVVQPKDTVDRVAKILSRNKAGSAVVMEG------DEILGVVTERDILDKVVA 49 (70)
T ss_dssp EEEECTTCBHHHHHHHHHHTTCSEEEEEET------TEEEEEEEHHHHHHHTTT
T ss_pred CEEECCCCcHHHHHHHHHHcCCCEEEEEEC------CEEEEEEEHHHHHHHHHh
Confidence 468999999999999999999999999986 899999999999876543
|
| >3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.7e-07 Score=85.50 Aligned_cols=59 Identities=14% Similarity=0.109 Sum_probs=53.9
Q ss_pred cccccccc--cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~--~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~~ 590 (605)
.+++++|+ +++.++++++++.+|++.|.+++++++||+|+ + ++++|+||.+|+++...+
T Consensus 42 ~~v~diM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~dl~~~~~~ 103 (172)
T 3lhh_A 42 RTISSLMVPRSDIVFLDLNLPLDANLRTVMQSPHSRFPVCRN-----NVDDMVGIISAKQLLSESIA 103 (172)
T ss_dssp -CTTTTSEEGGGCCCEETTSCHHHHHHHHHTCCCSEEEEESS-----STTSEEEEEEHHHHHHHHHT
T ss_pred CCHHHhCccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-----CCCeEEEEEEHHHHHHHHhh
Confidence 57899999 77889999999999999999999999999997 6 899999999999998764
|
| >2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=5.2e-07 Score=88.81 Aligned_cols=63 Identities=11% Similarity=0.219 Sum_probs=55.9
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
.+.++|+|++++.++.+++++.++.++|.+++++.+||||+ .++++++|+||++||++++...
T Consensus 12 ~~~v~diMt~~vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~---~~~~~LvGiIt~~dl~~~l~~~ 74 (250)
T 2d4z_A 12 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT---PDTNTLLGSIDRTEVEGLLQRR 74 (250)
T ss_dssp SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC---TTTCBEEEEEEHHHHHHHHHHH
T ss_pred CCChHHhcCCCCeEECCCCCHHHHHHHHHhcCCCEEEEEec---CCCCeEEEEEEHHHHHHHHHHh
Confidence 35799999999999999999999999999999999999987 2236899999999999876544
|
| >3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.9e-07 Score=80.76 Aligned_cols=60 Identities=18% Similarity=0.247 Sum_probs=55.3
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHhhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~~~ 591 (605)
.+++++|++ ++.++++++++.++.+.|.+++.+++||+|+ + |+++|+||.+|+++...+.
T Consensus 23 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~dl~~~~~~~ 85 (148)
T 3lv9_A 23 KKIREIMVPRTDMVCIYESDSEEKILAILKEEGVTRYPVCRK-----NKDDILGFVHIRDLYNQKINE 85 (148)
T ss_dssp CBGGGTSEETTTCCCEETTCCHHHHHHHHHHSCCSEEEEESS-----STTSEEEEEEHHHHHHHHHHH
T ss_pred CCHHHccccHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHhcC
Confidence 578999998 8999999999999999999999999999998 6 7999999999999886543
|
| >3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=5.8e-07 Score=88.28 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=56.1
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
.+++++|++++.++++++++.+|+++|.+++++++||+|+ +|+++|+||.+|+.+.+.+.
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lpVvd~-----~~~l~Giit~~di~~~~~~~ 66 (245)
T 3l2b_A 7 LKVEDLEMDKIAPLAPEVSLKMAWNIMRDKNLKSIPVADG-----NNHLLGMLSTSNITATYMDI 66 (245)
T ss_dssp CBGGGSCCBCCCCBCTTCBHHHHHHHHHHTTCSEEEEECT-----TCBEEEEEEHHHHHHHHHCC
T ss_pred CcHHHhcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCEEEEEEEHHHHHHHHHHh
Confidence 5689999999999999999999999999999999999998 79999999999999987643
|
| >3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=6.4e-07 Score=77.42 Aligned_cols=58 Identities=21% Similarity=0.300 Sum_probs=53.5
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++++|++++.++++++++.++.+.|.+++.+.+||+|+ +|+++|+||++|+.+...+
T Consensus 2 ~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~G~vt~~dl~~~~~~ 59 (122)
T 3kpb_A 2 LVKDILSKPPITAHSNISIMEAAKILIKHNINHLPIVDE-----HGKLVGIITSWDIAKALAQ 59 (122)
T ss_dssp BHHHHCCSCCCCEETTSBHHHHHHHHHHHTCSCEEEECT-----TSBEEEEECHHHHHHHHHT
T ss_pred chHHhhCCCCEEeCCCCcHHHHHHHHHHcCCCeEEEECC-----CCCEEEEEEHHHHHHHHHh
Confidence 467889999999999999999999999999999999998 7999999999999987654
|
| >3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.30 E-value=9.3e-07 Score=80.39 Aligned_cols=59 Identities=17% Similarity=0.211 Sum_probs=53.2
Q ss_pred hccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHh
Q 007394 526 YIDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI 589 (605)
Q Consensus 526 ~~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~ 589 (605)
..+++++|++ ++.++++++++.++.+.|.+++++++||+|+ + ++++|+||.+|+++...
T Consensus 37 ~~~v~diM~~~~~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~dl~~~~~ 98 (156)
T 3oi8_A 37 DLEVRDAMITRSRMNVLKENDSIERITAYVIDTAHSRFPVIGE-----DKDEVLGILHAKDLLKYMF 98 (156)
T ss_dssp TCBGGGTCEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-----STTCEEEEEEGGGGGGGSS
T ss_pred CCCHhheeeeHHHeEEECCCCCHHHHHHHHHHCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHH
Confidence 3578999987 7889999999999999999999999999997 5 49999999999998754
|
| >3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-06 Score=79.14 Aligned_cols=59 Identities=17% Similarity=0.173 Sum_probs=54.8
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.+++++|++ ++.++++++++.++.+.|.+++.+.+||+|+ +|+++|+||.+|+.+...+
T Consensus 28 ~~v~dim~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~ 88 (149)
T 3k2v_A 28 LRVNDIMHTGDEIPHVGLQATLRDALLEITRKNLGMTAICDD-----DMNIIGIFTDGDLRRVFDT 88 (149)
T ss_dssp SBGGGTSBCGGGSCEECTTCBHHHHHHHHHHHTSSEEEEECT-----TCBEEEEEEHHHHHHHHCS
T ss_pred cCHHHHhcCCCCCeEECCCCcHHHHHHHHHhCCCcEEEEECC-----CCcEEEEecHHHHHHHHhc
Confidence 478999999 9999999999999999999999999999998 7999999999999987654
|
| >2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=77.41 Aligned_cols=59 Identities=10% Similarity=0.159 Sum_probs=54.6
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCC--ceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVS--PVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g--~lvGiITr~Dll~~~~~ 590 (605)
.+++++|++++.++++++++.++.+.|.+++.+.+||+|+ ++ +++|+||++|+++...+
T Consensus 5 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~~~Givt~~dl~~~~~~ 65 (141)
T 2rih_A 5 IRTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR-----DNPKRPVAVVSERDILRAVAQ 65 (141)
T ss_dssp CBGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET-----TEEEEEEEEEEHHHHHHHHHT
T ss_pred eEHHHHhcCCCeEeCCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcceeEEEEEHHHHHHHHhc
Confidence 5689999999999999999999999999999999999998 67 99999999999987654
|
| >2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-06 Score=80.35 Aligned_cols=59 Identities=22% Similarity=0.398 Sum_probs=54.8
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.+++++|++++.++++++++.+|.++|.+.+.+.+||+|+ +|+++|+||++|+++....
T Consensus 5 ~~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-----~~~lvGivt~~dl~~~~~~ 63 (160)
T 2o16_A 5 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-----NKKLLGIVSQRDLLAAQES 63 (160)
T ss_dssp CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHH
T ss_pred CcHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEeHHHHHHHHHH
Confidence 5689999999999999999999999999999999999997 7999999999999987654
|
| >3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.7e-07 Score=77.86 Aligned_cols=59 Identities=15% Similarity=0.002 Sum_probs=54.2
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
..+++++|++++.++++++++.+|.+.|.+++.+.+||+|+ |+++|+||.+|+.+...+
T Consensus 4 s~~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------~~~~Givt~~dl~~~~~~ 62 (128)
T 3gby_A 4 SVTFSYLAETDYPVFTLGGSTADAARRLAASGCACAPVLDG------ERYLGMVHLSRLLEGRKG 62 (128)
T ss_dssp TCBGGGGCBCCSCCEETTSBHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHTTCSS
T ss_pred ceEHHHhhcCCcceECCCCCHHHHHHHHHHCCCcEEEEEEC------CEEEEEEEHHHHHHHHhh
Confidence 36789999999999999999999999999999999999986 899999999999986543
|
| >2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.4e-06 Score=77.18 Aligned_cols=56 Identities=23% Similarity=0.256 Sum_probs=52.3
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
.+++++|++++.++++++++.++.+.|.+++.+.+||+|+ +|+++|+||.+|+++.
T Consensus 7 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~ 62 (138)
T 2yzi_A 7 APIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-----DGNVVGFFTKSDIIRR 62 (138)
T ss_dssp SBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHH
T ss_pred hhHHHHhcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEeHHHHHHH
Confidence 5689999999999999999999999999999999999997 7999999999999853
|
| >3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.28 E-value=5.8e-07 Score=78.58 Aligned_cols=58 Identities=14% Similarity=0.189 Sum_probs=52.2
Q ss_pred cccccccccC--CceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTNTT--PYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~~~--~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~ 589 (605)
.+++++|++. +.++++++++.+|.+.|.+++.+++||+|+ + |+++|+||.+|+++...
T Consensus 3 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~vGivt~~dl~~~~~ 63 (127)
T 3nqr_A 3 QRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-----DKDHIEGILMAKDLLPFMR 63 (127)
T ss_dssp CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-----STTCEEEEEEGGGGGGGGS
T ss_pred cCHHHhcccHHHeEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHh
Confidence 4578889854 889999999999999999999999999998 6 79999999999998754
|
| >3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.25 E-value=8e-07 Score=77.94 Aligned_cols=58 Identities=12% Similarity=0.138 Sum_probs=52.3
Q ss_pred cccccccc--cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~--~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~ 589 (605)
.+++++|+ +++.++++++++.+|.+.|.+++.+++||+|+ + ++++|+||.+|+++...
T Consensus 5 ~~v~diM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~~Givt~~dl~~~~~ 65 (129)
T 3jtf_A 5 RTVADIMVPRSRMDLLDISQPLPQLLATIIETAHSRFPVYED-----DRDNIIGILLAKDLLRYML 65 (129)
T ss_dssp CBHHHHCEEGGGCCCEETTSCHHHHHHHHHHSCCSEEEEESS-----STTCEEEEEEGGGGGGGGT
T ss_pred CCHHHhCccHHHeEEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCCcEEEEEEHHHHHhHhc
Confidence 46788898 67789999999999999999999999999987 5 89999999999998754
|
| >2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-06 Score=76.00 Aligned_cols=58 Identities=19% Similarity=0.236 Sum_probs=53.5
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHh-HHHHh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL-RAFNI 589 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dl-l~~~~ 589 (605)
.+++++|++++.++++++++.++.+.|.+++.+.+||+|+ +|+++|+||++|+ .+...
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~ 66 (138)
T 2p9m_A 8 IKVKDVMTKNVITAKRHEGVVEAFEKMLKYKISSLPVIDD-----ENKVIGIVTTTDIGYNLIR 66 (138)
T ss_dssp CBGGGTSBCSCCCEETTSBHHHHHHHHHHHTCCEEEEECT-----TCBEEEEEEHHHHHHHHTT
T ss_pred CCHHHhhcCCceEECCCCcHHHHHHHHHHCCCcEEEEECC-----CCeEEEEEEHHHHHHHHHh
Confidence 5689999999999999999999999999999999999997 7999999999999 77543
|
| >3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.1e-06 Score=77.81 Aligned_cols=58 Identities=10% Similarity=0.187 Sum_probs=52.3
Q ss_pred cccccccc--cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~--~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~ 589 (605)
.+++++|+ +++.++++++++.+|+++|.+++++++||+|+ + ++++|+||.+|+++...
T Consensus 3 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd~-----~~~~~vGivt~~dl~~~~~ 63 (136)
T 3lfr_A 3 LQVRDIMVPRSQMISIKATQTPREFLPAVIDAAHSRYPVIGE-----SHDDVLGVLLAKDLLPLIL 63 (136)
T ss_dssp CBHHHHSEEGGGCCCEETTCCHHHHHHHHHHHCCSEEEEESS-----STTCEEEEEEGGGGGGGGG
T ss_pred CChHhccccHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEcC-----CCCcEEEEEEHHHHHHHHH
Confidence 45788888 56789999999999999999999999999997 6 79999999999998764
|
| >3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1e-06 Score=77.32 Aligned_cols=59 Identities=12% Similarity=0.243 Sum_probs=52.2
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~~ 590 (605)
.+++++|++ ...++++++++.+|.+.|.+++++++||+|+ + |+++|+||.+|+++...+
T Consensus 6 ~~v~~iM~~~~~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~~Givt~~dl~~~~~~ 67 (130)
T 3i8n_A 6 VPVTQVMTPRPVVFRVDATMTINEFLDKHKDTPFSRPLVYSE-----QKDNIIGFVHRLELFKMQQS 67 (130)
T ss_dssp -CCTTTSCCBCCCCEEETTSBHHHHHHHTTTCSCSCCEEESS-----STTCEEEECCHHHHHHHHHT
T ss_pred CCHhhCCCcHHHEEEEcCCCCHHHHHHHHHhCCCCEEEEEeC-----CCCcEEEEEEHHHHHHHHhc
Confidence 568999985 4458999999999999999999999999997 6 899999999999988654
|
| >1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-06 Score=74.73 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=52.0
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++++|++++.++++++++.++.+.|.+++.+.+||+|+ |+++|+||++|+.+...+
T Consensus 2 ~v~~~m~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------~~~~G~it~~dl~~~~~~ 58 (125)
T 1pbj_A 2 RVEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE------GVRVGIVTTWDVLEAIAE 58 (125)
T ss_dssp CHHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET------TEEEEEEEHHHHHHHHHH
T ss_pred CHHHhcCCCceEECCCCcHHHHHHHHHHcCCCEEEEEeC------CeeEEEEeHHHHHHHHhc
Confidence 467889999999999999999999999999999999985 899999999999987654
|
| >3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=3e-06 Score=77.13 Aligned_cols=58 Identities=26% Similarity=0.394 Sum_probs=52.9
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.++++++|++ +.++.+++++.+|.+.|.+++.+.+||+|+ +|+++|+||.+|+++...
T Consensus 16 ~~~v~~im~~-~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~ 73 (159)
T 3fv6_A 16 KLQVKDFQSI-PVVIHENVSVYDAICTMFLEDVGTLFVVDR-----DAVLVGVLSRKDLLRASI 73 (159)
T ss_dssp TCBGGGSCBC-CCEEETTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHHT
T ss_pred hCCHHHHcCC-CEEECCCCcHHHHHHHHHHCCCCEEEEEcC-----CCcEEEEEeHHHHHHHhh
Confidence 3578999987 669999999999999999999999999998 799999999999998763
|
| >3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0 | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=78.29 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=53.6
Q ss_pred hcccccccc--cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 526 YIDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 526 ~~~v~~im~--~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
..+++++|+ +++.++++++++.+|.+.|.+++.+++||+|+ +|+++|+||++|+++...
T Consensus 14 ~~~v~~im~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd~-----~~~~~Givt~~dl~~~~~ 74 (150)
T 3lqn_A 14 QIFVKDLMISSEKVAHVQIGNGLEHALLVLVKSGYSAIPVLDP-----MYKLHGLISTAMILDGIL 74 (150)
T ss_dssp HCBHHHHSEEGGGSCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHTB
T ss_pred cCChhhcccCCCceEEECCCCcHHHHHHHHHHcCCcEEEEECC-----CCCEEEEEEHHHHHHHHH
Confidence 357888998 45899999999999999999999999999998 799999999999998764
|
| >3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.3e-06 Score=76.76 Aligned_cols=60 Identities=2% Similarity=0.004 Sum_probs=51.7
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++++++|++ ++.++++++++.+|.++|.+++++++||+|+ .+++++|+||.+|+++...+
T Consensus 2 ~~v~~iM~~~~~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~----~~~~lvGivt~~dl~~~~~~ 63 (130)
T 3hf7_A 2 VSVNDIMVPRNEIVGIDINDDWKSIVRQLTHSPHGRIVLYRD----SLDDAISMLRVREAYRLMTE 63 (130)
T ss_dssp CBHHHHSEEGGGCCEEETTSCHHHHHHHHHTCSSSEEEEESS----SGGGEEEEEEHHHHHHHHTS
T ss_pred cCHHHhCccHHHEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC----CCCcEEEEEEHHHHHHHHhc
Confidence 357788864 6789999999999999999999999999964 14899999999999987654
|
| >2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.1e-06 Score=74.28 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=53.4
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.+++++|++++.++++++++.+|.+.|.+++.+.+||+|+ |+++|+||.+|+.+...+
T Consensus 4 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~------~~~~Givt~~dl~~~~~~ 61 (133)
T 2ef7_A 4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG------NKPVGIITERDIVKAIGK 61 (133)
T ss_dssp CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHHHHHT
T ss_pred ccHHHhccCCCEEECCCCcHHHHHHHHHhcCCCEEEEEEC------CEEEEEEcHHHHHHHHhc
Confidence 4688999999999999999999999999999999999986 899999999999987654
|
| >3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.15 E-value=2.7e-06 Score=77.46 Aligned_cols=58 Identities=17% Similarity=0.277 Sum_probs=51.4
Q ss_pred cccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 528 DLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 528 ~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++++|.+ +..++.+++|+.+|+++|.+++++++||+|+ +++++|+||.+|++++...
T Consensus 16 ~~~~iM~P~~~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd~-----~~~lvGiit~~Di~~~~~~ 75 (156)
T 3k6e_A 16 QEETFLTPAKNLAVLIDTHNADHATLLLSQMTYTRVPVVTD-----EKQFVGTIGLRDIMAYQME 75 (156)
T ss_dssp TGGGGEEETTSSCCEETTSBHHHHHHHHTTSSSSEEEEECC------CBEEEEEEHHHHHHHHHH
T ss_pred cHHHhCcchhHeEEECCcCCHHHHHHHHHHcCCcEEEEEcC-----CCcEEEEEEecchhhhhhh
Confidence 46778874 6789999999999999999999999999998 7999999999999987654
|
| >4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.7e-06 Score=76.33 Aligned_cols=56 Identities=18% Similarity=0.227 Sum_probs=52.1
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
++++++|++ ++.++++++++.+|.+.|.+++.+.+||+|+ +++++|+||++|+++.
T Consensus 5 ~~v~~im~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~G~vt~~dl~~~ 62 (152)
T 4gqw_A 5 YTVGEFMTKKEDLHVVKPTTTVDEALELLVENRITGFPVIDE-----DWKLVGLVSDYDLLAL 62 (152)
T ss_dssp SBGGGTSEESTTCCCBCTTSBHHHHHHHHHHTTCSEEEEECT-----TCBEEEEEEHHHHTTC
T ss_pred EEhhhccCCCCCCeEECCCCcHHHHHHHHHHcCCceEEEEeC-----CCeEEEEEEHHHHHHh
Confidence 568899988 8999999999999999999999999999998 7899999999999864
|
| >1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.8e-06 Score=75.76 Aligned_cols=55 Identities=18% Similarity=0.197 Sum_probs=51.4
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
.+++++|.+++.++++++++.++.+.|.+++.+.+||+|+ +++++|+||.+|+++
T Consensus 8 ~~v~~im~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~ 62 (133)
T 1y5h_A 8 TTARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-----DDRLHGMLTDRDIVI 62 (133)
T ss_dssp CCHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-----GGBEEEEEEHHHHHH
T ss_pred cCHHHHhcCCceEeCCCCCHHHHHHHHHHhCCCeEEEECC-----CCeEEEEEeHHHHHH
Confidence 4678899999999999999999999999999999999987 799999999999994
|
| >2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.8e-06 Score=76.91 Aligned_cols=58 Identities=10% Similarity=0.187 Sum_probs=53.7
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.+++++|.+ ++.++++++++.+|.+.|.+++.+++||+|+ +|+++|+||.+|+.+...
T Consensus 11 ~~v~~im~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd~-----~~~~~Givt~~dl~~~~~ 70 (157)
T 2emq_A 11 MTVKPFLIPADKVAHVQPGNYLDHALLVLTKTGYSAIPVLDT-----SYKLHGLISMTMMMDAIL 70 (157)
T ss_dssp CBSTTTCEEGGGSCCBCTTSBHHHHHHHHHHSSSSEEEEECT-----TCCEEEEEEHHHHHHHSB
T ss_pred CcHHhhccCCccceEECCCCcHHHHHHHHHHCCceEEEEEcC-----CCCEEEEeeHHHHHHHHh
Confidence 578999987 8899999999999999999999999999998 799999999999998754
|
| >1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.12 E-value=2.4e-06 Score=77.72 Aligned_cols=59 Identities=8% Similarity=0.077 Sum_probs=53.9
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.+++++|++ ++.++.+++++.+|.+.|.+++.+.+||+|+ +|+++|+||.+|+++....
T Consensus 14 ~~v~~im~~~~~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd~-----~~~lvGivt~~dl~~~~~~ 74 (159)
T 1yav_A 14 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-----SYRLHGLIGTNMIMNSIFG 74 (159)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-----TCBEEEEEEHHHHHHHHBC
T ss_pred hhHHHHhCCccceEEECCCCcHHHHHHHHHhCCCcEEEEECC-----CCCEEEEeEHHHHHHHhhh
Confidence 568889988 8999999999999999999999999999998 7899999999999987643
|
| >3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=98.12 E-value=2.4e-06 Score=78.29 Aligned_cols=60 Identities=20% Similarity=0.135 Sum_probs=54.3
Q ss_pred hccccccccc---CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 526 YIDLHPLTNT---TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 526 ~~~v~~im~~---~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.++++++|++ ++.++++++++.+|.+.|.+++.+.+||+|+ +|+++|+||.+|+++....
T Consensus 23 ~~~v~dim~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~ 85 (165)
T 3fhm_A 23 ATFVKDLLDRKGRDVVTVGPDVSIGEAAGTLHAHKIGAVVVTDA-----DGVVLGIFTERDLVKAVAG 85 (165)
T ss_dssp SCBHHHHHHHHCSCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHHHH
T ss_pred hcCHHHHhccCCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEcC-----CCeEEEEEEHHHHHHHHHh
Confidence 3568889985 6899999999999999999999999999998 7999999999999987654
|
| >1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A | Back alignment and structure |
|---|
Probab=98.11 E-value=4.6e-06 Score=77.89 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=54.1
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.+++++|++++.++++++++.+|+++|.+++.+++||+|+ +|+++|+||.+|+++...
T Consensus 9 ~~v~~im~~~~~~v~~~~~l~ea~~~~~~~~~~~~pVvd~-----~g~~vGivt~~dl~~~~~ 66 (184)
T 1pvm_A 9 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-----NGNDVGLLSERSIIKRFI 66 (184)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-----TSCEEEEEEHHHHHHHTG
T ss_pred cCHHHhcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcC-----CCcEEEEEeHHHHHHHHh
Confidence 5689999999999999999999999999999999999997 789999999999998654
|
| >3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.9e-06 Score=77.13 Aligned_cols=59 Identities=19% Similarity=0.039 Sum_probs=53.2
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCC-CceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGV-SPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~-g~lvGiITr~Dll~~~~~ 590 (605)
.+++++|++ ++.++++++++.+++++|.+++++++||+|+ + ++++|+||.+|+++...+
T Consensus 36 ~~v~diM~~~~~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-----~~~~lvGivt~~Dl~~~~~~ 97 (173)
T 3ocm_A 36 RSIRSIMTPRTDVSWVNIDDDAATIRQQLTAAPHSFFPVCRG-----SLDEVVGIGRAKDLVADLIT 97 (173)
T ss_dssp SCSTTTSEEGGGCCCEETTSCHHHHHHHHHHSSCSEEEEESS-----STTSEEEEEEHHHHHHHHHH
T ss_pred CCHHHhCCcHHHeEEEeCCCCHHHHHHHHHhCCCCEEEEEeC-----CCCCEEEEEEHHHHHHHHhc
Confidence 578999974 6789999999999999999999999999987 5 799999999999987654
|
| >3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-06 Score=77.53 Aligned_cols=61 Identities=11% Similarity=0.097 Sum_probs=53.5
Q ss_pred ccccccccc--CCceecCCCCHHHHHHHHHHcCCcEEEEc-cccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 527 IDLHPLTNT--TPYTVIESMSVAKAMVLFRQVGLRHLLVV-PKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 527 ~~v~~im~~--~~~~v~~~~sl~~a~~~~~~~~~~~lpVV-d~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
.+++++|++ ++.++++++++.+|.+.|.+++.+++||+ |+ .+|+++|+||.+|+++.....
T Consensus 20 ~~v~~iM~~~~~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d~----~~~~lvGivt~~dl~~~~~~~ 83 (153)
T 3oco_A 20 KVASDVMVDRTSMSVVDVDETIADALLLYLEEQYSRFPVTADN----DKDKIIGYAYNYDIVRQARID 83 (153)
T ss_dssp CBHHHHSEEGGGCCCEETTSBHHHHHHHHHHHCCSEEEEEETT----EEEEEEEEEEHHHHHHHHHHH
T ss_pred CEeeeEecchhheEEEcCCCCHHHHHHHHHhCCCCEEEEEECC----CCCcEEEEEEHHHHHhHHhcC
Confidence 568899986 88999999999999999999999999999 64 038999999999999876543
|
| >2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A | Back alignment and structure |
|---|
Probab=98.07 E-value=7.3e-06 Score=72.73 Aligned_cols=58 Identities=7% Similarity=0.084 Sum_probs=52.3
Q ss_pred cccc---ccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 528 DLHP---LTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 528 ~v~~---im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++++ +|.+++.++++++++.+|++.|.+++.+.+||+|+ +|+++|+||.+|+.+...+
T Consensus 9 ~v~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd~-----~~~~~Givt~~dl~~~~~~ 69 (144)
T 2nyc_A 9 PIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-----NGYLINVYEAYDVLGLIKG 69 (144)
T ss_dssp BGGGSSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHT
T ss_pred chhhcCCCCCCCceEECCCCcHHHHHHHHHHcCcceeeEEcC-----CCcEEEEEcHHHHHHHhcc
Confidence 3555 78889999999999999999999999999999998 7999999999999987653
|
| >1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=3.8e-06 Score=76.23 Aligned_cols=57 Identities=16% Similarity=0.170 Sum_probs=53.2
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcE-EEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRH-LLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~-lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.+++++|++++.++++++++.+|.+.|.+++.+. +||+|+ + +++|+||++|+++...
T Consensus 16 ~~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd~-----~-~~vGivt~~dl~~~~~ 73 (157)
T 1o50_A 16 KDVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-----N-KLVGMIPVMHLLKVSG 73 (157)
T ss_dssp HHHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-----T-EEEEEEEHHHHHHHHH
T ss_pred ccHhhcccCCCceECCCCCHHHHHHHHHhCCCCccEEEEEC-----C-EEEEEEEHHHHHHHHh
Confidence 5689999999999999999999999999999999 999998 6 9999999999998754
|
| >2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.05 E-value=4.4e-06 Score=76.05 Aligned_cols=60 Identities=13% Similarity=0.192 Sum_probs=53.4
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.+++++|++++.++++++++.+|.+.|.+++.+++||+|+ .++|+++|+||++|+.+...
T Consensus 13 ~~v~dim~~~~~~v~~~~~~~~a~~~~~~~~~~~~pVvd~---~~~~~~~Givt~~dl~~~~~ 72 (164)
T 2pfi_A 13 VRVEHFMNHSITTLAKDTPLEEVVKVVTSTDVTEYPLVES---TESQILVGIVQRAQLVQALQ 72 (164)
T ss_dssp CBHHHHCBCCCCCEETTCBHHHHHHHHHTCCCSEEEEESC---TTTCBEEEEEEHHHHHHHHH
T ss_pred CCHHHHcCCCCeEECCCCcHHHHHHHHHhCCCCceeEEec---CCCCEEEEEEEHHHHHHHHH
Confidence 5688999999999999999999999999999999999983 11489999999999998764
|
| >2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=4.6e-06 Score=77.67 Aligned_cols=60 Identities=20% Similarity=0.156 Sum_probs=53.8
Q ss_pred hcccccccccC----Ccee--cCCCCHHHHHHHHHHcCCcEEEEc--cccccCCCCceEEEEeHHHhHHHHhh
Q 007394 526 YIDLHPLTNTT----PYTV--IESMSVAKAMVLFRQVGLRHLLVV--PKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 526 ~~~v~~im~~~----~~~v--~~~~sl~~a~~~~~~~~~~~lpVV--d~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
..+++++|++. +.++ .+++++.+|.++|.+++.+.+||+ |+ +|+++|+||++|+++....
T Consensus 10 ~~~v~dim~~~~~~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d~-----~~~lvGiit~~dl~~~~~~ 77 (185)
T 2j9l_A 10 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRE-----SQRLVGFVLRRDLIISIEN 77 (185)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTT-----TCBEEEEEEHHHHHHHHHH
T ss_pred cCcHHHHhcccccCceEEEecCCCccHHHHHHHHHhcCCCceeEEEECC-----CCeEEEEEEHHHHHHHHHh
Confidence 45688899887 7888 999999999999999999999999 66 7999999999999987654
|
| >3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.99 E-value=6.4e-06 Score=76.21 Aligned_cols=60 Identities=22% Similarity=0.384 Sum_probs=55.6
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+++++|.+ ++.++++++++.++++.|.+++.+.+||+|++ |+++|+|+++|+++.+.+
T Consensus 97 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~~vGiit~~dil~~~~~ 156 (180)
T 3sl7_A 97 GKVVGDLMTP--SPLVVRDSTNLEDAARLLLETKFRRLPVVDAD-----------GKLIGILTRGNVVRAALQ 156 (180)
T ss_dssp TCBHHHHSEE--SCCCEETTSBHHHHHHHHTTSTTCEEEEECTT-----------CBEEEEEEHHHHHHHHHH
T ss_pred cccHHHHhCC--CceEeCCCCcHHHHHHHHHHcCCCEEEEECCC-----------CeEEEEEEHHHHHHHHHH
Confidence 4679999998 88999999999999999999999999999987 899999999999987765
|
| >3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=76.65 Aligned_cols=60 Identities=13% Similarity=0.221 Sum_probs=55.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+++++|++ +++++++++++.++++.|.+++.+.+||||++ |+++|+||..|++..+..
T Consensus 115 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVVD~~-----------g~lvGiIT~~Dil~~i~~ 174 (205)
T 3kxr_A 115 HEPLISLLSE--DSRALTANTTLLDAAEAIEHSREIELPVIDDA-----------GELIGRVTLRAATALVRE 174 (205)
T ss_dssp TSBGGGGCCS--SCCCEETTSCHHHHHHHHHTSSCSEEEEECTT-----------SBEEEEEEHHHHHHHHHH
T ss_pred cchHHHHhcC--CCeEECCCCCHHHHHHHHHhcCCCEEEEEcCC-----------CeEEEEEEHHHHHHHHHH
Confidence 4579999998 89999999999999999999999999999988 999999999999987754
|
| >2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-05 Score=71.00 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
.+.+++++|.+ ++.++++++++.++++.|.+++.+.+||+| + ++++|+|+.+|+++.+.+
T Consensus 72 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----------g~~~Giit~~dll~~~~~ 131 (135)
T 2rc3_A 72 KDTQVKEIMTR--QVAYVDLNNTNEDCMALITEMRVRHLPVLD-D-----------GKVIGLLSIGDLVKDAIS 131 (135)
T ss_dssp GGSBGGGTSBC--SCCCBCTTCBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHHC
T ss_pred ccCCHHHhccC--CCeEECCCCcHHHHHHHHHHhCCCEEEEEe-C-----------CEEEEEEEHHHHHHHHHh
Confidence 45789999998 899999999999999999999999999999 5 899999999999887654
|
| >3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.4e-05 Score=87.61 Aligned_cols=61 Identities=20% Similarity=0.330 Sum_probs=56.3
Q ss_pred hcccccccccCCceecCC-CCHHHHHHHHHHcCCcEEEEcc-ccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 526 YIDLHPLTNTTPYTVIES-MSVAKAMVLFRQVGLRHLLVVP-KYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~-~sl~~a~~~~~~~~~~~lpVVd-~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
..+++++|++++.++.++ +++.+++++|.+++++++||+| + +++++|+||.+||++.+...
T Consensus 383 ~~~V~diM~~~~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~~-----~g~lvGiVt~~Dll~~l~~~ 445 (527)
T 3pc3_A 383 SLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVDQD-----DGSVLGVVGQETLITQIVSM 445 (527)
T ss_dssp TSBGGGGCCCCCSCCEETTCBHHHHHHHHHHHTCSEEEEECTT-----TCCEEEEEEHHHHHHHHHHH
T ss_pred CCcHHHhCcCCCeEEcCCCCcHHHHHHHHHHcCCCeEEEEECC-----CCEEEEEEEHHHHHHHHHhc
Confidence 467999999999999999 9999999999999999999999 6 68999999999999887653
|
| >4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.8e-05 Score=71.64 Aligned_cols=60 Identities=25% Similarity=0.370 Sum_probs=55.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
.+.+++++|.+ ++.++++++++.++++.|.+++.+.+||+| + ++++|+|+++|+++.+.+
T Consensus 76 ~~~~v~~~m~~--~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd-~-----------g~~~Giit~~dil~~l~~ 135 (157)
T 4fry_A 76 KATRVEEIMTA--KVRYVEPSQSTDECMALMTEHRMRHLPVLD-G-----------GKLIGLISIGDLVKSVIA 135 (157)
T ss_dssp SSCBHHHHSBS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE-T-----------TEEEEEEEHHHHHHHHHT
T ss_pred cccCHHHHcCC--CCcEECCCCcHHHHHHHHHHcCCCEEEEEE-C-----------CEEEEEEEHHHHHHHHHH
Confidence 35789999998 899999999999999999999999999999 5 899999999999987765
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=2.1e-05 Score=85.42 Aligned_cols=61 Identities=15% Similarity=0.285 Sum_probs=0.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 481 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~ 481 (605)
+.+++++|+++.+++++++++++.++++.|.+++.+.+||||++ ++++|+||.+|+++.+.
T Consensus 160 ~~~V~diM~~~~~~~tv~~~~sl~ea~~~m~~~~i~~lpVVDe~-----------g~lvGiIT~~Dil~~~~ 220 (503)
T 1me8_A 160 ETKVSDMMTPFSKLVTAHQDTKLSEANKIIWEKKLNALPIIDDD-----------QHLRYIVFRKDYDRSQV 220 (503)
T ss_dssp ------------------------------------------------------------------------
T ss_pred cCcHHHHhCCCCCCEEEcCCCcHHHHHHHHHHcCCCEEEEEcCC-----------CeEEEEEEecHHHHhhh
Confidence 46799999982239999999999999999999999999999988 99999999999977543
|
| >2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=6.8e-05 Score=75.31 Aligned_cols=60 Identities=13% Similarity=0.307 Sum_probs=55.1
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+++++|.+ +++++++++++.++.+.|.+++.+.+||||++ |+++|+||..|++..+..
T Consensus 200 ~~~v~~im~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd~~-----------g~lvGiIT~~Dil~~i~~ 259 (286)
T 2oux_A 200 DTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-----------DHLLGIVTVDDIIDVIDD 259 (286)
T ss_dssp TSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHcCC--CCeeecCCCCHHHHHHHHHHcCCcEEEEEcCC-----------CeEEEEEEHHHHHHHHHH
Confidence 4678999998 89999999999999999999999999999987 899999999999887654
|
| >2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A | Back alignment and structure |
|---|
Probab=97.55 E-value=6.1e-05 Score=75.27 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=53.8
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+++++|.+ +++++++++++.++++.|.+++.+.+||||++ |+++|+||..|++..+..
T Consensus 198 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----------g~lvGivT~~Dil~~i~~ 257 (278)
T 2yvy_A 198 RTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----------GRLVGIVTVDDVLDVLEA 257 (278)
T ss_dssp TCBSTTTSBS--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHC--
T ss_pred CCcHHHHhCC--CCeEEeCCCCHHHHHHHHHhcCCCEEEEEeCC-----------CeEEEEEEHHHHHHHHHH
Confidence 4678999988 89999999999999999999999999999987 899999999999876543
|
| >2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=78.51 Aligned_cols=60 Identities=17% Similarity=0.317 Sum_probs=55.5
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+++++|++ +++++++++++.++.+.|.+++.+.+||||++ |+++|+||.+|+++.+..
T Consensus 218 ~~~v~dim~~--~~~~v~~~~~l~ea~~~m~~~~~~~lpVVDe~-----------g~lvGiIT~~Dil~~i~~ 277 (473)
T 2zy9_A 218 RTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----------GRLVGIVTVDDVLDVLEA 277 (473)
T ss_dssp TSBGGGTSBS--SCCCEESSSBHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHHHH
T ss_pred CCcHHHHhCC--CCeEEeCCCcHHHHHHHHHhcCCcEEEEEcCC-----------CEEEEEEehHhhHHHHHH
Confidence 4679999998 89999999999999999999999999999988 999999999999987654
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00034 Score=75.92 Aligned_cols=61 Identities=16% Similarity=0.297 Sum_probs=54.7
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+++++|++ .+++++++++++.++++.|.+++.+.+||||++ ++++|+|+.+|+++.+..
T Consensus 174 ~~~V~~vM~~-~~~vtv~~~~~l~eal~~m~~~~i~~lpVVDe~-----------g~l~GiIT~~Dil~~~~~ 234 (511)
T 3usb_A 174 SIKISDVMTK-EQLITAPVGTTLSEAEKILQKYKIEKLPLVDNN-----------GVLQGLITIKDIEKVIEF 234 (511)
T ss_dssp SSBHHHHCCC-CCCCCEETTCCHHHHHHHHHHHTCSEEEEECTT-----------SBEEEEEEHHHHHHHHHC
T ss_pred CCcHHHhccc-CCCEEECCCCCHHHHHHHHHHcCCCEEEEEeCC-----------CCEeeeccHHHHHHhhhc
Confidence 5678999985 368899999999999999999999999999998 999999999999886544
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00022 Score=77.15 Aligned_cols=53 Identities=30% Similarity=0.362 Sum_probs=48.3
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhH
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLR 585 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll 585 (605)
+.+++|.+++.++++++++.++.++|.+++++.+||+|+ +++++|+||.+|+.
T Consensus 90 ~~~~~m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd~-----~~~lvGiVt~rDL~ 142 (496)
T 4fxs_A 90 IFEAGVVTHPVTVRPEQTIADVMELTHYHGFAGFPVVTE-----NNELVGIITGRDVR 142 (496)
T ss_dssp HCCC--CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEECS-----SSBEEEEEEHHHHT
T ss_pred ccccccccCceEECCCCCHHHHHHHHHHcCCcEEEEEcc-----CCEEEEEEEHHHHh
Confidence 467889999999999999999999999999999999998 79999999999997
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00078 Score=72.93 Aligned_cols=54 Identities=20% Similarity=0.287 Sum_probs=50.5
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcc--ccccCCCCceEEEEeHHHhHH
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP--KYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd--~~~~~~~g~lvGiITr~Dll~ 586 (605)
.++++|.+++.++++++++.++.+.|.+++++.+||+| + +++++|+||.+|+++
T Consensus 91 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~-----~~~lvGivt~~Dl~~ 146 (491)
T 1zfj_A 91 RSENGVIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLA-----NRKLVGIITNRDMRF 146 (491)
T ss_dssp HHTTTTSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTT-----TCBEEEEEEHHHHHH
T ss_pred hHHhcCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCC-----CCEEEEEEEHHHHhh
Confidence 45789999999999999999999999999999999999 6 799999999999986
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00019 Score=77.92 Aligned_cols=55 Identities=29% Similarity=0.331 Sum_probs=1.6
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
.+++++|.+++.++++++++.+++++|.+++++.+||+|+ +++++|+||.+|+.+
T Consensus 95 ~~~~~iM~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~-----~~~lvGivt~~Dl~~ 149 (494)
T 1vrd_A 95 KKTENGIIYDPITVTPDMTVKEAIDLMAEYKIGGLPVVDE-----EGRLVGLLTNRDVRF 149 (494)
T ss_dssp HTC---------------------------------------------------------
T ss_pred hhHhhcCccCCeEECCCCCHHHHHHHHHHcCceEEEEEcC-----CCEEEEEEEHHHHHh
Confidence 3578889999999999999999999999999999999998 789999999999975
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00026 Score=75.27 Aligned_cols=58 Identities=21% Similarity=0.332 Sum_probs=0.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l 480 (605)
+.+++++|++ ++++++++.+++++.++|.+++...+||||++ ++|+|+||++|+.+.-
T Consensus 199 ~~~V~evMT~--~lvt~~~~~~leeA~~iL~~~kieklpVVd~~-----------g~LvGlIT~kDi~k~~ 256 (556)
T 4af0_A 199 ETPIKSVMTT--EVVTGSSPITLEKANSLLRETKKGKLPIVDSN-----------GHLVSLVARSDLLKNQ 256 (556)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ceEhhhhccc--ceEEecCCCCHHHHHHHHHHccccceeEEccC-----------CcEEEEEEechhhhhh
Confidence 4579999999 89999999999999999999999999999998 9999999999997643
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00035 Score=75.48 Aligned_cols=58 Identities=29% Similarity=0.382 Sum_probs=0.0
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHH
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLAL 480 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l 480 (605)
+.+++++|++ +++++++++++.++++.|.+++.+.+||||++ ++++|++|++|+++..
T Consensus 149 ~~~v~~im~~--~~~~v~~~~~l~eal~~m~~~~~~~lpVVde~-----------g~lvGiiT~~Dil~~~ 206 (486)
T 2cu0_A 149 GKLVKELMTK--EVITVPESIEVEEALKIMIENRIDRLPVVDER-----------GKLVGLITMSDLVARK 206 (486)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CCCHHHHccC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEecC-----------CeEEEEEEHHHHHHhh
Confidence 4678999998 88999999999999999999999999999987 8999999999997753
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.00044 Score=75.29 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=28.9
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
++.++|.+++.++.+++++.++.++|.+++++.+||+|++ ..+++++|+||++|+.+.
T Consensus 109 ~~~~im~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~--~~~~~lvGiVt~~Dl~~~ 166 (514)
T 1jcn_A 109 NFEQGFITDPVVLSPSHTVGDVLEAKMRHGFSGIPITETG--TMGSKLVGIVTSRDIDFL 166 (514)
T ss_dssp TCCTTSCSSCCCCCC-----------------CEESCC----------CCEECTTTTC--
T ss_pred hhhhccccCCEEECCCCCHHHHHHHHHhcCCCEEEEEeCC--CcCCEEEEEEEHHHHHhh
Confidence 5778899999999999999999999999999999999860 002799999999999763
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.00051 Score=74.13 Aligned_cols=54 Identities=28% Similarity=0.394 Sum_probs=3.2
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHH
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRA 586 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~ 586 (605)
.+++++|.+++.++++++++.++.++|.+++++.+||+|+ ++++|+||.+|+..
T Consensus 88 k~~~~~m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd~------g~lvGIVt~rDl~~ 141 (490)
T 4avf_A 88 KKHETAIVRDPVTVTPSTKIIELLQMAREYGFSGFPVVEQ------GELVGIVTGRDLRV 141 (490)
T ss_dssp HHCCC-------------------------------------------------------
T ss_pred cccccCcccCceEeCCCCcHHHHHHHHHHhCCCEEEEEEC------CEEEEEEEhHHhhh
Confidence 3478889999999999999999999999999999999986 89999999999963
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 605 | ||||
| d1otsa_ | 444 | f.20.1.1 (A:) Clc chloride channel {Escherichia co | 2e-35 | |
| d2j9la1 | 169 | d.37.1.1 (A:578-746) Chloride channel protein 5, C | 4e-07 | |
| d2ooxe1 | 179 | d.37.1.1 (E:3-181) Uncharacterized protein C1556.0 | 2e-05 | |
| d2d4za3 | 160 | d.37.1.1 (A:527-606,A:691-770) Chloride channel pr | 3e-05 | |
| d2yzqa1 | 156 | d.37.1.1 (A:123-278) Uncharacterized protein PH178 | 0.003 |
| >d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} Length = 444 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Clc chloride channel superfamily: Clc chloride channel family: Clc chloride channel domain: Clc chloride channel species: Escherichia coli [TaxId: 562]
Score = 136 bits (344), Expect = 2e-35
Identities = 80/397 (20%), Positives = 150/397 (37%), Gaps = 72/397 (18%)
Query: 1 MFGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFN 60
+ L VK G +G + G+ LG+EGP V IG I ++ +
Sbjct: 106 VRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD------------IFRLK 153
Query: 61 NDRDRRDLITCGSSSGVCAAFRAPVGGVLFSLEEVATWWRSALLWRTFFSTAVVVVVLRA 120
D R L+ G+++G+ AAF AP+ G+LF +EE+ +R L+ V++
Sbjct: 154 GDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMS---T 210
Query: 121 FIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVTLIGIIGGILGGLYNHILHKVL 180
+ + + L G L ++ + ++GII GI G ++N + +
Sbjct: 211 IMYRIFNHEVALIDVGKLSDAPLNTLW---------LYLILGIIFGIFGPIFNKWVLGMQ 261
Query: 181 RLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFKQ 240
L + ++ +L+ ++ + + P
Sbjct: 262 DLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT------------------------- 296
Query: 241 FNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300
G N+ T F ++ F+ I L+ F P
Sbjct: 297 --SGGGF-----------------NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAP 337
Query: 301 SGLFLPIILMGSAYGRLLGMAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFL 357
G+F P++ +G+ G GM +++ G +A+ G +L+A S+R ++ ++ L
Sbjct: 338 GGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVL 397
Query: 358 ELTNNLLLLPITMIVLLIAKTVGDSFNP-SIYEIILE 393
E+T+N L+ +I L A + +Y IL
Sbjct: 398 EMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILA 434
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} Length = 169 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 4e-07
Identities = 30/167 (17%), Positives = 63/167 (37%), Gaps = 29/167 (17%)
Query: 418 DAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLV 477
+ + V + ++ TT++GFPV+ + L G +LR L+
Sbjct: 14 NDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVS---------RESQRLVGFVLRRDLI 64
Query: 478 LALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTP 537
++++ Q+ V E + L + + +P
Sbjct: 65 ISIENARKKQD--------------GVVSTSIIYFTEHSPPLPPYTPPTLKLRNILDLSP 110
Query: 538 YTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+TV + + + +FR++GLR LV ++GI+T++D+
Sbjct: 111 FTVTDLTPMEIVVDIFRKLGLRQCLVTHNGR------LLGIITKKDV 151
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 43.4 bits (101), Expect = 2e-05
Identities = 20/177 (11%), Positives = 44/177 (24%), Gaps = 29/177 (16%)
Query: 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATEL 467
+R+ T +++ +I V + +L P+ D
Sbjct: 17 IRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS---------EANKFA 67
Query: 468 HGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYI 527
L + + + E + E I
Sbjct: 68 GLLTMADFVNVIKYYYQSSSFPEAIAEIDKFRLLGL---------REVERKIGAIPPETI 118
Query: 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+HP S+ A + + R + ++ G +V +LT+ +
Sbjct: 119 YVHP-----------MHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRI 164
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} Length = 160 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Score = 42.7 bits (99), Expect = 3e-05
Identities = 33/183 (18%), Positives = 61/183 (33%), Gaps = 34/183 (18%)
Query: 406 PWMR----TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLA 461
W + VG+++ V +++ ++ VLR T FP +D +
Sbjct: 2 SWSSANKYNIQVGDIM--VRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGS 59
Query: 462 NVATELHGLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSE 521
TE+ GL+ R + + WE REK V
Sbjct: 60 IDRTEVEGLLQRRISAYRRQPFEEMLTLEEIYRWEQREKNVVVNFET------------- 106
Query: 522 EMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTR 581
+ +P+ ++E S+ K LF +GL V + +VG++
Sbjct: 107 ---------CRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSMGK------LVGVVAL 151
Query: 582 QDL 584
++
Sbjct: 152 AEI 154
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 36.5 bits (83), Expect = 0.003
Identities = 17/176 (9%), Positives = 47/176 (26%), Gaps = 26/176 (14%)
Query: 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELH 468
+ + + + V + + + L + PV+D +
Sbjct: 2 KGVEIEPYY--QRYVSIVWEGTPLKAALKALLLSNSMALPVVDSE--------GNLVGIV 51
Query: 469 GLILRAHLVLALKKKWFLQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYID 528
++ + +EE + E + + E ++ V
Sbjct: 52 DETDLLRDSEIVRIMKSTELAASSEEEWILESHPTLLFEKFELQLPNKPV---------- 101
Query: 529 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDL 584
+ M+V + + + + L V+ ++G++ DL
Sbjct: 102 -AEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRGEGD-----LIGLIRDFDL 151
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| d1otsa_ | 444 | Clc chloride channel {Escherichia coli [TaxId: 562 | 100.0 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 99.79 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 99.78 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 99.78 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 99.78 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.78 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 99.78 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 99.78 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 99.77 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 99.77 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.75 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 99.75 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 99.75 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 99.75 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 99.75 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 99.74 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 99.72 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 99.72 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 99.71 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 99.7 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.69 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.69 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 99.69 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 99.68 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 99.66 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 99.65 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 99.62 | |
| d1otsa_ | 444 | Clc chloride channel {Escherichia coli [TaxId: 562 | 99.23 | |
| d2o16a3 | 139 | Hypothetical protein VC0737 {Vibrio cholerae [TaxI | 98.63 | |
| d2yzia1 | 132 | Uncharacterized protein PH0107 {Pyrococcus horikos | 98.61 | |
| d2yzqa1 | 156 | Uncharacterized protein PH1780 {Pyrococcus horikos | 98.56 | |
| d1y5ha3 | 123 | Hypothetical protein Rv2626c {Mycobacterium tuberc | 98.53 | |
| d2ouxa2 | 127 | Magnesium transporter MgtE {Enterococcus faecalis | 98.49 | |
| d1pvma4 | 142 | Hypothetical protein Ta0289 {Archaeon Thermoplasma | 98.44 | |
| d2yzqa2 | 122 | Uncharacterized protein PH1780 {Pyrococcus horikos | 98.41 | |
| d1pbja3 | 120 | Hypothetical protein MTH1622 {Archaeon Methanobact | 98.41 | |
| d1vr9a3 | 121 | Hypothetical protein TM0892, CBS tandem {Thermotog | 98.4 | |
| d1o50a3 | 145 | Hypothetical protein TM0935 {Thermotoga maritima [ | 98.4 | |
| d2d4za3 | 160 | Chloride channel protein, CBS tandem {Marbled elec | 98.39 | |
| d2ef7a1 | 127 | Uncharacterized protein ST2348 {Sulfolobus tokodai | 98.39 | |
| d1zfja4 | 126 | Type II inosine monophosphate dehydrogenase CBS do | 98.37 | |
| d1yava3 | 132 | Hypothetical protein YkuL {Bacillus subtilis [TaxI | 98.36 | |
| d3ddja1 | 141 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 98.34 | |
| d2riha1 | 131 | Uncharacterized protein PAE2072 {Pyrobaculum aerop | 98.29 | |
| d2yvxa2 | 144 | Magnesium transporter MgtE {Thermus thermophilus [ | 98.29 | |
| d3ddja2 | 135 | Uncharacterized protein SSO3205 {Sulfolobus solfat | 98.23 | |
| d2rc3a1 | 127 | Uncharacterized protein NE2398 {Nitrosomonas europ | 98.2 | |
| d2nyca1 | 140 | Nuclear protein SNF4 {Baker's yeast (Saccharomyces | 98.19 | |
| d2ooxe2 | 153 | Uncharacterized protein C1556.08c {Schizosaccharom | 98.04 | |
| d1jr1a4 | 120 | Type II inosine monophosphate dehydrogenase CBS do | 98.03 | |
| d2j9la1 | 169 | Chloride channel protein 5, ClC-5 {Human (Homo sap | 97.94 | |
| d2v8qe1 | 145 | 5'-AMP-activated protein kinase subunit gamma-1, A | 97.89 | |
| d2v8qe2 | 159 | 5'-AMP-activated protein kinase subunit gamma-1, A | 97.77 | |
| d2ooxe1 | 179 | Uncharacterized protein C1556.08c {Schizosaccharom | 97.65 | |
| d1lkvx_ | 213 | FliG {Thermotoga maritima [TaxId: 2336]} | 80.37 |
| >d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Clc chloride channel superfamily: Clc chloride channel family: Clc chloride channel domain: Clc chloride channel species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.2e-52 Score=448.34 Aligned_cols=323 Identities=25% Similarity=0.442 Sum_probs=269.1
Q ss_pred CccchHHHHHHHHHHHHhcCCCcCCcchHHHHHHHHHHHhhcCCCCccchhhhhhhccCChhhhHHHHHHhHhhhhhhhh
Q 007394 2 FGATTLIVKIIGSIGAVAAGLDLGKEGPLVHIGSCIASLLGQGGPDNHRIKWQWLRYFNNDRDRRDLITCGSSSGVCAAF 81 (605)
Q Consensus 2 l~~~~~~~k~~~~~~~v~~G~s~G~EgP~v~iga~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~r~l~~~g~aagiaa~F 81 (605)
+++|+.+.|++++++++++|+|+|||||++|+|++++++++| ++|. ++++++|.+++||+|||++++|
T Consensus 107 ~~~r~~~~k~~~~~~sl~~G~s~G~EGP~v~iga~i~~~l~~-----------~~~~-~~~~~~r~l~~~GaaAglaa~F 174 (444)
T d1otsa_ 107 RWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLD-----------IFRL-KGDEARHTLLATGAAAGLAAAF 174 (444)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSCBSHHHHHHHHHHHHHHHHH-----------HTTC-CSHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHH-----------HHhh-hhHHhhHHHHHHHHHHHHhhcc
Confidence 568999999999999999999999999999999999999998 4443 2566789999999999999999
Q ss_pred ccchhHHHHHHHHhcchhhh--hhHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCceeEEeeccCCcccchhhHHHHH
Q 007394 82 RAPVGGVLFSLEEVATWWRS--ALLWRTFFSTAVVVVVLRAFIEICTSGKCGLFGTGGLIMFDVSNVPVRYHVMDIIPVT 159 (605)
Q Consensus 82 ~aPl~g~lF~~E~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~f~~~~~~~~~~~~~l~~~i 159 (605)
|||++|++|++|+++++++. +.++++++++++++++.+.. .++.+ .|+++ ....+++.++++++
T Consensus 175 ~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----------~~~~~--~~~~~-~~~~~~~~~~~~~~ 240 (444)
T d1otsa_ 175 NAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIMSTIMYRIF-----------NHEVA--LIDVG-KLSDAPLNTLWLYL 240 (444)
T ss_dssp TCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHHHHHHHHHH-----------SCSCC--SSCCC-CCCCCCGGGHHHHH
T ss_pred CCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHHHhhheeec-----------cCccc--ccccc-cccCCCHHHHHHHH
Confidence 99999999999999887654 33666666666665555432 23333 34444 24567889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHhhhhhccccccccCCCCCCCCCCCCCCCCCCCcc
Q 007394 160 LIGIIGGILGGLYNHILHKVLRLYNLINQKGKMHKLLLALSVSVFTSVCQYCLPFLADCKACDPSFPETCPTNGRSGNFK 239 (605)
Q Consensus 160 llgi~~gl~g~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~g~~~ 239 (605)
++|++||++|.+|++.+.+..+++++.+.....++.+.+.+++.+++++.++.|+. .|.
T Consensus 241 ~lgi~~g~~g~~f~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~~p~~----------------~g~----- 299 (444)
T d1otsa_ 241 ILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVAPAT----------------SGG----- 299 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCGGG----------------SSC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHhccCccc----------------CCC-----
Confidence 99999999999999999999999988766555556666777788888888888876 221
Q ss_pred cccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHH
Q 007394 240 QFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVPSGLFLPIILMGSAYGRLLG 319 (605)
Q Consensus 240 ~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~gG~f~Psl~iGa~~G~~~g 319 (605)
+|+.+. ..++ ++.+...++.+++.|+++|++|+++|+|||.|+|++++||++|++++
T Consensus 300 -------G~~~~~------------~~~~----~~~~~~~l~~~~~~K~~~t~~t~~~G~~GG~f~P~l~iGa~~G~~~~ 356 (444)
T d1otsa_ 300 -------GFNLIP------------IATA----GNFSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFG 356 (444)
T ss_dssp -------STTHHH------------HHHH----TCSCHHHHHHHHHHHHHHHHHHHHTTCSSBSHHHHHHHHHHHHHHHH
T ss_pred -------chHHHH------------HHhc----CCcchHHHHHHHHHHHHHHHHHhhcCCCCCeehHHHHHHHHHHHHHH
Confidence 233222 2222 23456777888899999999999999999999999999999999999
Q ss_pred HHhhcc---cCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhc-CCcHHHHHHHh
Q 007394 320 MAMGSY---TNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLIAKTVGDSF-NPSIYEIILEL 394 (605)
Q Consensus 320 ~~~~~~---~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~tg~~~~l~p~~~a~~~a~~v~~~l-~~~iy~~~l~~ 394 (605)
.+++.. ...+|..|+++||+|++++++|+|+|++++++|+||++++++|+|+++++|+.+++.+ ++++||.++++
T Consensus 357 ~~~~~~~~~~~~~~~~~alvGmaa~~a~~~~~Plta~vl~~Eltg~~~~~~p~~ia~~~a~~v~~~~~~~siY~~~l~~ 435 (444)
T d1otsa_ 357 MVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILAR 435 (444)
T ss_dssp HHHHHHCGGGTCCHHHHHHHHHTHHHHHTSCCHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred HHHHHhCCcccCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 988652 3578999999999999999999999999999999999999999999999999999999 78999999875
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.79 E-value=5.2e-19 Score=154.92 Aligned_cols=125 Identities=23% Similarity=0.296 Sum_probs=111.1
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
|++.+|+|+|++ +++++++++++.++.+.|.+++++.+||+|+ ++++|+++.+|+++.+.+...
T Consensus 1 l~~~~V~d~m~~--~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~------------~~~~Givt~~dl~~~~~~~~~-- 64 (127)
T d2ef7a1 1 MEEEIVKEYMKT--QVISVTKDAKLNDIAKVMTEKNIGSVIVVDG------------NKPVGIITERDIVKAIGKGKS-- 64 (127)
T ss_dssp CCCCBGGGTSBC--SCCEEETTCBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHHHHHTTCC--
T ss_pred CCccCHHHhCCC--CCeEECCcCcHHHHHHHHHHcCCceEEeecc------------cchhhhcchhHHHHHHHhhcc--
Confidence 356789999999 9999999999999999999999999999986 689999999999876543210
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
...++.++|.+++.++++++++.++.+.|.+++.+++||+|+
T Consensus 65 -------------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~- 106 (127)
T d2ef7a1 65 -------------------------------------LETKAEEFMTASLITIREDSPITGALALMRQFNIRHLPVVDD- 106 (127)
T ss_dssp -------------------------------------TTCBGGGTSEECCCCEETTSBHHHHHHHHHHHTCSEEEEECT-
T ss_pred -------------------------------------ccchhhhhhhhhccccccccchhHHHHHHHHcCceEEEEEeC-
Confidence 113578899999999999999999999999999999999998
Q ss_pred ccCCCCceEEEEeHHHhHHHHhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||+.|+++++.+
T Consensus 107 ----~~~lvGiit~~Dll~~i~~ 125 (127)
T d2ef7a1 107 ----KGNLKGIISIRDITRAIDD 125 (127)
T ss_dssp ----TSCEEEEEEHHHHHHHHHH
T ss_pred ----CCeEEEEEEHHHHHHHHHh
Confidence 8999999999999998765
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=99.78 E-value=5.3e-19 Score=161.04 Aligned_cols=151 Identities=21% Similarity=0.300 Sum_probs=114.0
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
.+++|+|+|++ +++++++++++.|+++.|.+++++++||+|++ +++.++|+++..|+.+.+.+......
T Consensus 9 ~~~~V~diM~~--~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~---------~~~~lvg~is~~dl~~~l~~~~~~~~ 77 (160)
T d2d4za3 9 YNIQVGDIMVR--DVTSIASTSTYGDLLHVLRQTKLKFFPFVDTP---------DTNTLLGSIDRTEVEGLLQRRISAYR 77 (160)
T ss_dssp SSCBTTSSSBS--SCCCEETTCBHHHHHHHHHHCCCSEEEEESCT---------TTCBEEEEEEHHHHHHHHHHHHHTTS
T ss_pred cceEHHHhcCC--CCeEECCCCcHHHHHHHHHhcCCCcccccccc---------ccccccccchHHHHHHHHhhcccccc
Confidence 47899999999 99999999999999999999999999999964 44789999999999988776332211
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
....+. .....+..... ..........+.++|++++.++.+++|+.+++++|.+++++++||+|+
T Consensus 78 ~~~~~~-----~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~tv~~~~~l~~~~~~m~~~~v~~l~V~d~-- 142 (160)
T d2d4za3 78 RQPFEE-----MLTLEEIYRWE--------QREKNVVVNFETCRIDQSPFQLVEGTSLQKTHTLFSLLGLDRAYVTSM-- 142 (160)
T ss_dssp SSCCCS-----CCBHHHHHHHH--------HHHTTCBCCTTSSCEECCSCCBCTTCBHHHHHHHHHHHTCSEEEEEET--
T ss_pred ccchhh-----ccccchhhhhh--------hhhcccccceeeecccCCCEEEcCCCCHHHHHHHHHHcCCeEEEEEEC--
Confidence 110000 00000000000 000001123467899999999999999999999999999999999876
Q ss_pred cCCCCceEEEEeHHHhHHHHh
Q 007394 569 AAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~ 589 (605)
|+++||||++||+++..
T Consensus 143 ----g~lvGiIt~~Di~k~I~ 159 (160)
T d2d4za3 143 ----GKLVGVVALAEIQAAIE 159 (160)
T ss_dssp ----TEEEEEEEHHHHHHHHH
T ss_pred ----CEEEEEEEHHHHHHHhC
Confidence 89999999999999764
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=99.78 E-value=2.1e-19 Score=160.07 Aligned_cols=132 Identities=17% Similarity=0.254 Sum_probs=111.2
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++|+|+|++ ++.++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+++.+.+......
T Consensus 2 i~v~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~~-----------~~~~Giit~~dl~~~~~~~~~~~~-- 66 (139)
T d2o16a3 2 IKVEDMMTR--HPHTLLRTHTLNDAKHLMEALDIRHVPIVDAN-----------KKLLGIVSQRDLLAAQESSLQRSA-- 66 (139)
T ss_dssp CBGGGTSEE--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHHHCC-----
T ss_pred EEHHHhCcC--CCeEECCcCCHHHHHHHHHHcCCCeeeeeccc-----------ccccccccHHHHHHHHHhhhhhhh--
Confidence 689999999 99999999999999999999999999999988 899999999999887654211000
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
.. .......+++++|++++.++++++++.++.++|.+++++++||+|+
T Consensus 67 -----------~~-----------------~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---- 114 (139)
T d2o16a3 67 -----------QG-----------------DSLAFETPLFEVMHTDVTSVAPQAGLKESAIYMQKHKIGCLPVVAK---- 114 (139)
T ss_dssp ----------------------------------CCCBHHHHSCSCEEEBCTTSBHHHHHHHHHHTTCSCEEEEET----
T ss_pred -----------cc-----------------cccccccchhHhhccccccccccchHHHHHHHHHHcCceEEEEEEC----
Confidence 00 0011234688999999999999999999999999999999999986
Q ss_pred CCCceEEEEeHHHhHHHHhhh
Q 007394 571 GVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~~ 591 (605)
|+++|+||++||++++.+.
T Consensus 115 --~~lvGiit~~Dil~~~~~~ 133 (139)
T d2o16a3 115 --DVLVGIITDSDFVTIAINL 133 (139)
T ss_dssp --TEEEEEECHHHHHHHHHHH
T ss_pred --CEEEEEEEHHHHHHHHHHH
Confidence 8999999999999988763
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.78 E-value=1.4e-19 Score=157.72 Aligned_cols=121 Identities=17% Similarity=0.288 Sum_probs=104.3
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 491 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~ 491 (605)
+|+|+|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.+......
T Consensus 2 t~~diM~~--~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~~-----------~~~~Giit~~Di~~~~~~~~~~----- 63 (123)
T d1y5ha3 2 TARDIMNA--GVTCVGEHETLTAAAQYMREHDIGALPICGDD-----------DRLHGMLTDRDIVIKGLAAGLD----- 63 (123)
T ss_dssp CHHHHSEE--TCCCEETTSBHHHHHHHHHHHTCSEEEEECGG-----------GBEEEEEEHHHHHHTTGGGTCC-----
T ss_pred CHHHhcCC--CCcEECCcCcHHHHHHHHHHcCCCceEEEecc-----------chhhhhhhhhhHhhhhhhcCCC-----
Confidence 68999999 99999999999999999999999999999987 8999999999996532221100
Q ss_pred chhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCC
Q 007394 492 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG 571 (605)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~ 571 (605)
.....++++|++++.++++++++.+++++|.+++++++||+|+
T Consensus 64 --------------------------------~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~lpVvd~----- 106 (123)
T d1y5ha3 64 --------------------------------PNTATAGELARDSIYYVDANASIQEMLNVMEEHQVRRVPVISE----- 106 (123)
T ss_dssp --------------------------------TTTSBHHHHHTTCCCCEETTCCHHHHHHHHHHHTCSEEEEEET-----
T ss_pred --------------------------------cccceEEEEeeccceeeeecchHHHHHHHHHHcCceEEEEEEC-----
Confidence 0113467788899999999999999999999999999999986
Q ss_pred CCceEEEEeHHHhHHHH
Q 007394 572 VSPVVGILTRQDLRAFN 588 (605)
Q Consensus 572 ~g~lvGiITr~Dll~~~ 588 (605)
|+++|+||++||++++
T Consensus 107 -~~lvGiit~~Dil~~l 122 (123)
T d1y5ha3 107 -HRLVGIVTEADIARHL 122 (123)
T ss_dssp -TEEEEEEEHHHHHHTC
T ss_pred -CEEEEEEEHHHHHhhC
Confidence 7999999999999863
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=2.1e-19 Score=163.33 Aligned_cols=154 Identities=11% Similarity=0.080 Sum_probs=111.0
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
++++++++|++ +++++++++++.+|++.|.+++++++||+|++ ++++|+++..|+++.+........
T Consensus 2 ~~~~v~~~m~r--~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~~-----------~~lvG~it~~Dl~~~~~~~~~~~~ 68 (156)
T d2yzqa1 2 KGVEIEPYYQR--YVSIVWEGTPLKAALKALLLSNSMALPVVDSE-----------GNLVGIVDETDLLRDSEIVRIMKS 68 (156)
T ss_dssp GGCBSTTTSBS--CCCCEETTSBHHHHHHHHHTCSSSEEEEECTT-----------SCEEEEEEGGGGGGCGGGCC----
T ss_pred CCCCHHHHhcC--CCeEECCcCcHHHHHHHHHHcCCCEEEEEeCC-----------CCceeEEeeeechhhhcccccccc
Confidence 57899999999 99999999999999999999999999999988 899999999999654333221111
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
................+ ..............++.++|++++.++.+++++.++.+.|.+++++++||+|+
T Consensus 69 ~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~v~~~m~~~~~tv~~~~~l~~~~~~m~~~~~~~lpVvd~-- 138 (156)
T d2yzqa1 69 TELAASSEEEWILESHP--------TLLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIEQLPVIRG-- 138 (156)
T ss_dssp ------------------------------------CCCBGGGTCBSSCCCBCTTSBHHHHHHHHHHHTCSEEEEEET--
T ss_pred cccccchhhhhhhhhhh--------hhhHHHhhhcccCCEeehhcccCceEECcccccHHHHHHHHHcCeeEEEEEeC--
Confidence 00000000000000000 00000011112335789999999999999999999999999999999999998
Q ss_pred cCCCCceEEEEeHHHhHHHH
Q 007394 569 AAGVSPVVGILTRQDLRAFN 588 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~ 588 (605)
+|+++|+||++||++++
T Consensus 139 ---~g~lvGivt~~Dil~~l 155 (156)
T d2yzqa1 139 ---EGDLIGLIRDFDLLKVL 155 (156)
T ss_dssp ---TTEEEEEEEHHHHGGGG
T ss_pred ---CCEEEEEEEHHHHHHHh
Confidence 89999999999999875
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=6.1e-19 Score=157.61 Aligned_cols=125 Identities=18% Similarity=0.201 Sum_probs=110.1
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++|+|+|++ ++.++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+++.+......
T Consensus 3 m~v~dim~~--~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~~-----------~~~~Giit~~di~~~~~~~~~~---- 65 (142)
T d1pvma4 3 MRVEKIMNS--NFKTVNWNTTVFDAVKIMNENHLYGLVVKDDN-----------GNDVGLLSERSIIKRFIPRNKK---- 65 (142)
T ss_dssp CBGGGTSBT--TCCEEETTCBHHHHHHHHHHHTCCEEEEECTT-----------SCEEEEEEHHHHHHHTGGGCCC----
T ss_pred EEHHHhCCC--CCcEECCcCcHHHHHHHHHHCCCceEeeeccC-----------CcccceEEeechhhhhhhhccc----
Confidence 689999999 99999999999999999999999999999988 8999999999997644321100
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
....+++++|++++.++.+++++.+++++|.+++.+++||+|+
T Consensus 66 ---------------------------------~~~~~v~~im~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd~---- 108 (142)
T d1pvma4 66 ---------------------------------PDEVPIRLVMRKPIPKVKSDYDVKDVAAYLSENGLERCAVVDD---- 108 (142)
T ss_dssp ---------------------------------GGGSBGGGTSBSSCCEEETTCBHHHHHHHHHHHTCSEEEEECT----
T ss_pred ---------------------------------ccccccccccccccccccchhhHHHHHHHHHHcCCcEEEEEec----
Confidence 0124688999999999999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHhh
Q 007394 571 GVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||+.||++++.+
T Consensus 109 -~g~l~Giit~~Dil~~l~~ 127 (142)
T d1pvma4 109 -PGRVVGIVTLTDLSRYLSR 127 (142)
T ss_dssp -TCCEEEEEEHHHHTTTSCH
T ss_pred -CCEEEEEEEHHHHHHHHhh
Confidence 8999999999999997654
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.78 E-value=1.2e-19 Score=157.85 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=91.6
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++++|+|++ +++++++++++.++.+.|.+++++.+||+|++ ++++|+|+.+|++....
T Consensus 1 m~v~diM~~--~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~-----------~~~~G~it~~dl~~~~~--------- 58 (122)
T d2yzqa2 1 MRVKTIMTQ--NPVTITLPATRNYALELFKKYKVRSFPVVNKE-----------GKLVGIISVKRILVNPD--------- 58 (122)
T ss_dssp CBHHHHSEE--SCCCEESSCC------------CCEEEEECTT-----------CCEEEEEESSCC--------------
T ss_pred CCcccccCC--CCEEECCcCcHHHHHHHHHHcCCcEEEEEecc-----------ccchhhhhcchhhhhhc---------
Confidence 578999999 99999999999999999999999999999988 99999999998854211
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
...+.++|+++++++++++++.+++++|.+++.+++||||+
T Consensus 59 -----------------------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~---- 99 (122)
T d2yzqa2 59 -----------------------------------EEQLAMLVKRDVPVVKENDTLKKAAKLMLEYDYRRVVVVDS---- 99 (122)
T ss_dssp ----------------------------------------CCCBSCCCEEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred -----------------------------------ccchhhccccceeecchhhHHHHHHHHHHHcCcEEEEEEeC----
Confidence 12467889999999999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHhhh
Q 007394 571 GVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++++.++
T Consensus 100 -~~~liGiit~~dil~~~~~~ 119 (122)
T d2yzqa2 100 -KGKPVGILTVGDIIRRYFAK 119 (122)
T ss_dssp -TSCEEEEEEHHHHHHHTTTT
T ss_pred -CCEEEEEEEHHHHHHHHHhH
Confidence 89999999999999987653
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.77 E-value=1.3e-18 Score=153.40 Aligned_cols=125 Identities=10% Similarity=0.185 Sum_probs=109.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+|+|+|++ +++++++++++.++.+.|.+++++.+||+|++ ++++|+++.+|+++.+..+..
T Consensus 5 ~pV~~im~~--~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~~-----------~~~~Giit~~di~~~~~~~~~----- 66 (132)
T d2yzia1 5 APIKVYMTK--KLLGVKPSTSVQEASRLMMEFDVGSLVVINDD-----------GNVVGFFTKSDIIRRVIVPGL----- 66 (132)
T ss_dssp SBGGGTCBC--CCCEECTTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHTTTTCC-----
T ss_pred CcHHHHcCC--CCeEECCcCcHHHHHHHHHHcCCcEEEEeccc-----------ceeeeeeeHHHHHHHHhhccC-----
Confidence 579999999 99999999999999999999999999999998 899999999999765433110
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
....+++++|.+++.++.+++++.++++.|.+++.+++||+++
T Consensus 67 ---------------------------------~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~V~~~---- 109 (132)
T d2yzia1 67 ---------------------------------PYDIPVERIMTRNLITANVNTPLGEVLRKMAEHRIKHILIEEE---- 109 (132)
T ss_dssp ---------------------------------CTTSBGGGTCBCSCCEEETTSBHHHHHHHHHHHTCSEEEEEET----
T ss_pred ---------------------------------ccceeEeecccccccccCcchHHHHHHHHHHHcCCCEEEEEEC----
Confidence 0124688999999999999999999999999999999998764
Q ss_pred CCCceEEEEeHHHhHHHHhhhh
Q 007394 571 GVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~~~ 592 (605)
|+++|+||++|+++++.++.
T Consensus 110 --~~~vGivt~~Dil~a~~~~l 129 (132)
T d2yzia1 110 --GKIVGIFTLSDLLEASRRRL 129 (132)
T ss_dssp --TEEEEEEEHHHHHHHHHCCS
T ss_pred --CEEEEEEEHHHHHHHHHHHH
Confidence 89999999999999987644
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=99.77 E-value=3.8e-19 Score=155.78 Aligned_cols=119 Identities=18% Similarity=0.174 Sum_probs=105.4
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcC-----CCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNT-----THNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~-----~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
||+.+|++ +++++++++|++++++.|+++ +.+.+||+|++ ++++|+++.+++... .
T Consensus 2 taG~iM~~--d~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-----------~~l~G~v~~~~l~~~---~--- 62 (127)
T d2ouxa2 2 TAGAIMTT--EFVSIVANQTVRSAMYVLKNQADMAETIYYVYVVDQE-----------NHLVGVISLRDLIVN---D--- 62 (127)
T ss_dssp BHHHHCBS--CCCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEECTT-----------CBEEEEEEHHHHTTS---C---
T ss_pred ChhHhCCC--CcEEECCCCcHHHHHHHhHhhcccccceeeeEEEecC-----------CeEEEEEEeeccccc---c---
Confidence 68899999 999999999999999999765 36789999998 999999998888421 0
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
...++.++|++++.++++++++.+|.++|.+++++++||||+
T Consensus 63 --------------------------------------~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~ 104 (127)
T d2ouxa2 63 --------------------------------------DDTLIADILNERVISVHVGDDQEDVAQTIRDYDFLAVPVTDY 104 (127)
T ss_dssp --------------------------------------TTSBHHHHSBSCCCCEETTSBHHHHHHHHHHHTCSEEEEECT
T ss_pred --------------------------------------ccEEhhhhccCCCccCCCCCCHHHHHHHHHHhCCEEEEEEeC
Confidence 013578999999999999999999999999999999999998
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhhh
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~~ 592 (605)
+|+++|+||++|+++...+++
T Consensus 105 -----~g~lvGiIt~~Dil~~i~eea 125 (127)
T d2ouxa2 105 -----DDHLLGIVTVDDIIDVIDDEA 125 (127)
T ss_dssp -----TCBEEEEEEHHHHHHHHHHHH
T ss_pred -----CCEEEEEEEHHHHHHHHHHHh
Confidence 899999999999999887754
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.75 E-value=7.3e-19 Score=156.84 Aligned_cols=132 Identities=19% Similarity=0.176 Sum_probs=112.8
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++|+++|++ +++++++++|+.++.+.|.+++++++||+|++ +++.|+++.+|+.+.+........
T Consensus 2 ~~V~~iMt~--~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~~-----------~~~~g~i~~~di~~~~~~~~~~~~-- 66 (141)
T d3ddja1 2 FPVKVFMST--KVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDD-----------NKVVGIVTVVNAIKQLAKAVDKLD-- 66 (141)
T ss_dssp CBHHHHSBC--SCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHHHHHHHHHHHTC--
T ss_pred EeeHHhCcC--CCeEEcCcCcHHHHHHHHHHcCCCeeeccccc-----------Cccccccccccchhhhhccccccc--
Confidence 579999999 99999999999999999999999999999988 899999999999876544211000
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
. ......+++++|++++.++.+++++.++++.|.+++.+++||+|+
T Consensus 67 ------------~------------------~~~~~~~v~~im~~~~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd~---- 112 (141)
T d3ddja1 67 ------------P------------------DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLILNK---- 112 (141)
T ss_dssp ------------T------------------HHHHTCBHHHHSBCCCCBCCTTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred ------------c------------------ccccCCCHHHHhCcccccccccchhhHHHHHHHHcCCCEEEEEcc----
Confidence 0 001124688899999999999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHhhhh
Q 007394 571 GVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~~~ 592 (605)
+|+++|+||++|+++.+.+..
T Consensus 113 -~~~~iGiIt~~Dil~~l~~~~ 133 (141)
T d3ddja1 113 -DNTIRGIITERDLLIALHHIL 133 (141)
T ss_dssp -TSCEEEEEEHHHHHHHHHHHH
T ss_pred -CCEEEEEEEHHHHHHHHHHHH
Confidence 899999999999999887643
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=99.75 E-value=8.9e-19 Score=156.87 Aligned_cols=121 Identities=20% Similarity=0.201 Sum_probs=107.2
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCC-----CCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTT-----HNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~-----~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
+|+++|++ +++++++++|+.++++.|++++ .+.+||+|++ ++++|+++.+|+....
T Consensus 2 taG~iM~~--~~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd~~-----------~~l~G~v~~~dl~~~~------ 62 (144)
T d2yvxa2 2 EAGGLMTP--EYVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVDEK-----------GRLKGVLSLRDLIVAD------ 62 (144)
T ss_dssp SSGGGCBS--CCCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBCTT-----------CBBCCBCBHHHHTTSC------
T ss_pred CcccccCC--CCEEECCCCcHHHHHHHHHHhcccccceeeeEEecCC-----------CCEecccchhhhhhcc------
Confidence 68999999 9999999999999999998764 5788999998 9999999999984310
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
...++.++|++++.++++++++.+|++.|.+++.+++||||+
T Consensus 63 --------------------------------------~~~~v~~im~~~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~ 104 (144)
T d2yvxa2 63 --------------------------------------PRTRVAEIMNPKVVYVRTDTDQEEVARLMADYDFTVLPVVDE 104 (144)
T ss_dssp --------------------------------------TTCBSTTTSBSSCCCEESSCCHHHHHHHHHHSCCSEEEEECS
T ss_pred --------------------------------------cccchHHhcccCCccCCCCChHHHHHHHHHHcCCCEEEEEeE
Confidence 113588999999999999999999999999999999999998
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhhhCC
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILTAFP 594 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~~~~ 594 (605)
+|+++|+||++|+++.+.++..+
T Consensus 105 -----~g~lvGiIt~~Dil~~l~~e~~e 127 (144)
T d2yvxa2 105 -----EGRLVGIVTVDDVLDVLEAEATE 127 (144)
T ss_dssp -----SCBEEEEEEHHHHHHHHHHHHHH
T ss_pred -----CCEEEEEEEHHHHHHHHHHHhHH
Confidence 89999999999999988776543
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=99.75 E-value=1.6e-18 Score=150.47 Aligned_cols=119 Identities=16% Similarity=0.166 Sum_probs=107.6
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++++++|++ ++.++++++|++++++.|.+++++.+||+|++ ++++|+++.+|+.+..
T Consensus 1 m~v~~~m~~--~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~~-----------~~~~Gii~~~dl~~~~---------- 57 (121)
T d1vr9a3 1 MKVKKWVTQ--DFPMVEESATVRECLHRMRQYQTNECIVKDRE-----------GHFRGVVNKEDLLDLD---------- 57 (121)
T ss_dssp CBGGGGCBS--CSCEEETTCBHHHHHHHHHHTTSSEEEEECTT-----------SBEEEEEEGGGGTTSC----------
T ss_pred CCchhhhcC--CCeEECCCCCHHHHHHhhhhcCcEEEEEEeCC-----------ceeEEEeehhhhhhhh----------
Confidence 578999999 99999999999999999999999999999987 8999999999984310
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
...++.++|++++.++++++++.+++++|.+++.+.+||||+
T Consensus 58 ----------------------------------~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvde---- 99 (121)
T d1vr9a3 58 ----------------------------------LDSSVFNKVSLPDFFVHEEDNITHALLLFLEHQEPYLPVVDE---- 99 (121)
T ss_dssp ----------------------------------TTSBSGGGCBCTTCCEETTSBHHHHHHHHHHCCCSEEEEECT----
T ss_pred ----------------------------------ccccccccccCccEEECCCCCHHHHHHHHHhcCceeeeeECC----
Confidence 012577889999999999999999999999999999999999
Q ss_pred CCCceEEEEeHHHhHHHHhhh
Q 007394 571 GVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++++.++
T Consensus 100 -~g~~~Gvit~~dil~~l~~~ 119 (121)
T d1vr9a3 100 -EMRLKGAVSLHDFLEALIEA 119 (121)
T ss_dssp -TCBEEEEEEHHHHHHHHHHS
T ss_pred -CCeEEEEEEHHHHHHHHHHh
Confidence 89999999999999998864
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=1e-18 Score=154.07 Aligned_cols=130 Identities=20% Similarity=0.130 Sum_probs=109.4
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
.+|+++|.+..++++++++++++++++.|.+++++++||+|++ ++++|+++.+|+++.+.+......
T Consensus 2 ~tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~~-----------~~~vGiit~~di~~~~~~~~~~~~-- 68 (132)
T d1yava3 2 ATVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDPS-----------YRLHGLIGTNMIMNSIFGLERIEF-- 68 (132)
T ss_dssp CBHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------CBEEEEEEHHHHHHHHBCSSSBCG--
T ss_pred CCHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeecc-----------cccccEEEcchhHHHhhccccccc--
Confidence 5789999776689999999999999999999999999999987 899999999999887654211000
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
+.....+++++|++++.++.+++++.+++++|.+++ .+||+|+
T Consensus 69 -------------------------------~~~~~~~v~~~m~~~~~~v~~~~~l~~~~~~~~~~~--~l~Vvd~---- 111 (132)
T d1yava3 69 -------------------------------EKLDQITVEEVMLTDIPRLHINDPIMKGFGMVINNG--FVCVEND---- 111 (132)
T ss_dssp -------------------------------GGTTTSBHHHHSBCSCCEEETTSBHHHHHHHTTTCS--EEEEECT----
T ss_pred -------------------------------cccccccccccccccccccccchhHHHHHHHHHhCC--EEEEEcc----
Confidence 001124678899999999999999999999998754 5999998
Q ss_pred CCCceEEEEeHHHhHHHHhhh
Q 007394 571 GVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++++.+.
T Consensus 112 -~~~~~Givt~~dil~~l~~~ 131 (132)
T d1yava3 112 -EQVFEGIFTRRVVLKELNKH 131 (132)
T ss_dssp -TCBEEEEEEHHHHHHHHHHH
T ss_pred -CCEEEEEEEHHHHHHHHHhh
Confidence 89999999999999998763
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.75 E-value=2.6e-18 Score=148.87 Aligned_cols=119 Identities=13% Similarity=0.148 Sum_probs=104.3
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 491 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~ 491 (605)
+|+|+|++ ++.++++++|+.|+.+.|.+++++.+||+|+ ++++|+++.+|+++.+.+....
T Consensus 1 kV~diM~~--~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~------------~~~~Gvit~~Di~~~l~~~~~~----- 61 (120)
T d1pbja3 1 RVEDVMVT--DVDTIDITASLEDVLRNYVENAKGSSVVVKE------------GVRVGIVTTWDVLEAIAEGDDL----- 61 (120)
T ss_dssp CHHHHCBC--SCCEEETTCBHHHHHHHHHHHCCCEEEEEET------------TEEEEEEEHHHHHHHHHHTCCT-----
T ss_pred ChHHhCCC--CCeEECCcCcHHHHHHHHHHcCceEEEEEeC------------CcEEEEEEeeeccccccccccc-----
Confidence 47899999 9999999999999999999999999998875 7999999999998876542200
Q ss_pred chhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCC
Q 007394 492 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG 571 (605)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~ 571 (605)
...++.++|++++.++++++++.+|++.|.+++.+++||+|+
T Consensus 62 ---------------------------------~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~l~V~~~----- 103 (120)
T d1pbja3 62 ---------------------------------AEVKVWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEED----- 103 (120)
T ss_dssp ---------------------------------TTSBHHHHCBCGGGEECTTSCHHHHHHHHHHHTCSEEEEEET-----
T ss_pred ---------------------------------cceeEeeecccccccccchhHHHHHHHHHHHcCCeEEEEEEC-----
Confidence 123577889999999999999999999999999999999865
Q ss_pred CCceEEEEeHHHhHHHH
Q 007394 572 VSPVVGILTRQDLRAFN 588 (605)
Q Consensus 572 ~g~lvGiITr~Dll~~~ 588 (605)
|+++|+||++|++++.
T Consensus 104 -~~l~Givt~~Dil~A~ 119 (120)
T d1pbja3 104 -DEIIGVISATDILRAK 119 (120)
T ss_dssp -TEEEEEEEHHHHHHHH
T ss_pred -CEEEEEEEHHHHHhcC
Confidence 8999999999999874
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=99.74 E-value=5e-18 Score=148.53 Aligned_cols=123 Identities=18% Similarity=0.192 Sum_probs=105.0
Q ss_pred ccccccccC-CCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 412 TVGELIDAK-PPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 412 ~v~diM~~~-~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
+|+|+|..+ .+++++++++|+.++.+.|.+++++++||+|+ ++++|++|++|+++.+.....
T Consensus 3 tV~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~------------~~~vGiit~~Di~~~~~~~~~----- 65 (127)
T d2rc3a1 3 TVKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD------------EKLVGILTERDFSRKSYLLDK----- 65 (127)
T ss_dssp BHHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHHHGGGSSS-----
T ss_pred cHHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC------------CeEEEEEEccchhhhhhhhcc-----
Confidence 689999742 37999999999999999999999999999985 799999999999764322110
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
.....+++++|++++.++.+++++.+++++|.+++++++||+|+
T Consensus 66 --------------------------------~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---- 109 (127)
T d2rc3a1 66 --------------------------------PVKDTQVKEIMTRQVAYVDLNNTNEDCMALITEMRVRHLPVLDD---- 109 (127)
T ss_dssp --------------------------------CGGGSBGGGTSBCSCCCBCTTCBHHHHHHHHHHHTCSEEEEEET----
T ss_pred --------------------------------cccceeEeeeccceeEEeccCccHHHHHHHHHHCCCcEEEEEEC----
Confidence 00124688999999999999999999999999999999999986
Q ss_pred CCCceEEEEeHHHhHHHHh
Q 007394 571 GVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~ 589 (605)
|+++|+||++|++++..
T Consensus 110 --~~~~GiIt~~Dil~~~i 126 (127)
T d2rc3a1 110 --GKVIGLLSIGDLVKDAI 126 (127)
T ss_dssp --TEEEEEEEHHHHHHHHH
T ss_pred --CEEEEEEEHHHHHHHHh
Confidence 89999999999999764
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=99.72 E-value=1.1e-17 Score=147.90 Aligned_cols=132 Identities=14% Similarity=0.103 Sum_probs=108.9
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++|+|+|.+ +++++++++++.+|++.|.+++++++||+|+ +++|+++..|+.+.+.........
T Consensus 1 m~V~~lM~~--~~~~v~~~~tl~~a~~~m~~~~~~~l~V~d~-------------~lvg~~~~~~~~~~~~~~~~~~~~- 64 (135)
T d3ddja2 1 MNIETLMIK--NPPILSKEDRLGSAFKKINEGGIGRIIVANE-------------KIEGLLTTRDLLSTVESYCKDSCS- 64 (135)
T ss_dssp SSGGGTCEE--SCCEECTTSBHHHHHHHTTGGGCCEEEEESS-------------SEEEEEEHHHHHGGGTTCC---CC-
T ss_pred CEeeEEeeC--CCeEECCCCcHHHHHHHHHHhCCeEEEEEec-------------ceeceeeccchhhhhccccccchh-
Confidence 579999999 8999999999999999999999999999865 599999999997654432110000
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
.. ........+++++|++++.++++++++.+|+++|.+++++++||+|+
T Consensus 65 -----------~~----------------~~~~~~~~~v~~im~~~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~---- 113 (135)
T d3ddja2 65 -----------QG----------------DLYHISTTPIIDYMTPNPVTVYNTSDEFTAINIMVTRNFGSLPVVDI---- 113 (135)
T ss_dssp -----------HH----------------HHHHHHTSBGGGTSEESCCCEETTSCHHHHHHHHHHHTCSEEEEECT----
T ss_pred -----------hh----------------hccccccCCHHHHhCCccceEEeccccchhhhhhhhcceeEEEEEeC----
Confidence 00 00111235789999999999999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHhh
Q 007394 571 GVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|+++.+.+
T Consensus 114 -~g~lvGiit~~Dil~~~~~ 132 (135)
T d3ddja2 114 -NDKPVGIVTEREFLLLYKD 132 (135)
T ss_dssp -TSCEEEEEEHHHHGGGGGG
T ss_pred -CCEEEEEEEHHHHHHHHHH
Confidence 8999999999999998764
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.72 E-value=2.3e-17 Score=144.04 Aligned_cols=115 Identities=15% Similarity=0.185 Sum_probs=96.3
Q ss_pred cccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHH
Q 007394 417 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE 496 (605)
Q Consensus 417 M~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~ 496 (605)
|.+ +++++++++|+.++++.|.+++++++||+|+. .+++++|+||.+|+.......
T Consensus 3 mi~--dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~---------~~~~lvGivt~~Di~~~~~~~------------- 58 (126)
T d1zfja4 3 VII--DPFFLTPEHKVSEAEELMQRYRISGVPIVETL---------ANRKLVGIITNRDMRFISDYN------------- 58 (126)
T ss_dssp TSS--SCCCBCSSSBHHHHHHHHHHTTCSEEEEESCT---------TTCBEEEEEEHHHHHHCSCSS-------------
T ss_pred CEe--CceEECCCCCHHHHHHHHHHhCCCcEEEEeec---------cCCeEEEEeEHHHHHHhhccC-------------
Confidence 555 67899999999999999999999999999972 228999999999996521110
Q ss_pred HhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceE
Q 007394 497 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVV 576 (605)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lv 576 (605)
......+|.+++.++++++++.+|+++|.+++++++||||+ +|+++
T Consensus 59 -----------------------------~~~~~~~~~~~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd~-----~g~lv 104 (126)
T d1zfja4 59 -----------------------------APISEHMTSEHLVTAAVGTDLETAERILHEHRIEKLPLVDN-----SGRLS 104 (126)
T ss_dssp -----------------------------SBTTTSCCCSCCCCEETTCCHHHHHHHHHHTTCSEEEEECT-----TSBEE
T ss_pred -----------------------------CceeeeeeccceeecCCCCCHHHHHHHHHhcCCcEEEEEcC-----CCeEE
Confidence 01123456678889999999999999999999999999998 89999
Q ss_pred EEEeHHHhHHHHh
Q 007394 577 GILTRQDLRAFNI 589 (605)
Q Consensus 577 GiITr~Dll~~~~ 589 (605)
|+||++|++++..
T Consensus 105 GiiT~~Dil~~~~ 117 (126)
T d1zfja4 105 GLITIKDIEKVIE 117 (126)
T ss_dssp EEEEHHHHHHHHH
T ss_pred EEEEHHHHHHHhh
Confidence 9999999999765
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.2e-17 Score=153.58 Aligned_cols=155 Identities=21% Similarity=0.350 Sum_probs=111.5
Q ss_pred ccccccccccCC--Ce--eEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchh
Q 007394 410 TLTVGELIDAKP--PV--ITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWF 485 (605)
Q Consensus 410 ~~~v~diM~~~~--~v--~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~ 485 (605)
...|+|+|.++. ++ +.+.+++|++|+.++|.+++++++||++++ ++++++|+++++|++..+.+...
T Consensus 2 ~~~a~DiM~p~~~~~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~---------~~~~lvG~is~~dl~~~l~~~~~ 72 (169)
T d2j9la1 2 KTLAMDVMKPRRNDPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR---------ESQRLVGFVLRRDLIISIENARK 72 (169)
T ss_dssp CCBHHHHSBSCTTSCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT---------TTCBEEEEEEHHHHHHHHHHHHT
T ss_pred ccchhhhcCcCCCCCceEEECCCcCCHHHHHHHHHHcCCCceeeeecC---------CCCeEEEEEEhHHHHHHHhcccc
Confidence 456899998731 22 445678899999999999999999999653 34899999999999988765322
Q ss_pred hhhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcc
Q 007394 486 LQEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVP 565 (605)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd 565 (605)
....... .....+... ............+++++|++++.++.+++++.+++++|.+++.+++||+|
T Consensus 73 ~~~~~~~--------~~~~~~~~~------~~~~~~~~~~~~~v~~im~~~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d 138 (169)
T d2j9la1 73 KQDGVVS--------TSIIYFTEH------SPPLPPYTPPTLKLRNILDLSPFTVTDLTPMEIVVDIFRKLGLRQCLVTH 138 (169)
T ss_dssp SCSCCCT--------TCEEECSSS------CCCCCTTCCCCEECGGGEESSCCEEETTSBHHHHHHHHHHHTCSEEEEEE
T ss_pred ccccccc--------chhhhhccc------chhhhhccccccchhhhccCCCEEECCCCcHHHHHHHHHhcCceEEEEEE
Confidence 1111000 000000000 00000111124568999999999999999999999999999999999987
Q ss_pred ccccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 566 KYEAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 566 ~~~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
+ |+++|+||++|+++++.+...
T Consensus 139 ~------g~lvGiIt~~Dil~~l~~~~~ 160 (169)
T d2j9la1 139 N------GRLLGIITKKDVLKHIAQMAN 160 (169)
T ss_dssp T------TEEEEEEEHHHHHHHHHHHCC
T ss_pred C------CEEEEEEEHHHHHHHHHHHhc
Confidence 5 899999999999998876433
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.70 E-value=4.9e-17 Score=142.86 Aligned_cols=123 Identities=19% Similarity=0.244 Sum_probs=104.0
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++|+|+|++ +++++++++++.|+++.|.+++.+++||++++ ++++++|+++..|+.+.+.+....
T Consensus 1 ~~V~dim~~--~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d---------~~~~~iGi~~~~dl~~~~~~~~~~---- 65 (131)
T d2riha1 1 IRTSELLKR--PPVSLPETATIREVATELAKNRVGLAVLTARD---------NPKRPVAVVSERDILRAVAQRLDL---- 65 (131)
T ss_dssp CBGGGGCCS--CCEEEETTCBHHHHHHHHHHHTCSEEEEEETT---------EEEEEEEEEEHHHHHHHHHTTCCT----
T ss_pred CCHHHhccC--CCEEECCCCcHHHHHHHHHHhCCCcEEEEEEc---------CCCEEEEEEeeecccccccccccc----
Confidence 579999999 99999999999999999999999999999543 238999999999998765542200
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
......|.+++.++.+++++.+++++|.+++++++||+|+
T Consensus 66 ------------------------------------~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVvd~---- 105 (131)
T d2riha1 66 ------------------------------------DGPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVVNK---- 105 (131)
T ss_dssp ------------------------------------TSBSGGGCBCCCEEETTSBHHHHHHHHHHHTCSEEEEECT----
T ss_pred ------------------------------------ccccccccccceeEeeecchHHHHHHHHHCCeEEEEEEcC----
Confidence 1122335577889999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHh
Q 007394 571 GVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~ 589 (605)
+|+++|+||++||+++..
T Consensus 106 -~g~l~Giit~~Dll~~~~ 123 (131)
T d2riha1 106 -NGELVGVLSIRDLCFERA 123 (131)
T ss_dssp -TSCEEEEEEHHHHHSCHH
T ss_pred -CCeEEEEEEHHHHHHHHH
Confidence 899999999999998654
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.69 E-value=5.2e-17 Score=147.68 Aligned_cols=147 Identities=13% Similarity=0.084 Sum_probs=112.9
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQ 487 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~ 487 (605)
++..+++|+|.+..++++++.++++.+|++.|.+++++++||+|++. ++++|+++.+|+...+.+.....
T Consensus 10 l~~~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~~~----------~~~vG~is~~Dl~~~~~~~~~~~ 79 (159)
T d2v8qe2 10 MKSHRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDSKK----------QSFVGMLTITDFINILHRYYKSA 79 (159)
T ss_dssp HHHSBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEETTT----------TEEEEEEEHHHHHHHHHHHHHHH
T ss_pred hcCCEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEECCC----------CcEEEEEEHHHHHHHHHhccccc
Confidence 34568999996655789999999999999999999999999998631 89999999999988765432111
Q ss_pred hcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEcccc
Q 007394 488 EKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKY 567 (605)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~ 567 (605)
.... ..... ...........++|.++++++++++++.+++++|.+++.+++||+|+
T Consensus 80 ~~~~----------------------~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~- 135 (159)
T d2v8qe2 80 LVQI----------------------YELEE-HKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP- 135 (159)
T ss_dssp TTTC----------------------CCGGG-CBHHHHHHHHSSSSCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT-
T ss_pred cchh----------------------hhhhh-hhcccccceeeeeeccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC-
Confidence 1000 00000 00111223467888999999999999999999999999999999984
Q ss_pred ccCCCCceEEEEeHHHhHHHHhhh
Q 007394 568 EAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 568 ~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
++|+++|+||++||++++...
T Consensus 136 ---~~g~~~GivT~~dilk~l~~~ 156 (159)
T d2v8qe2 136 ---ESGNTLYILTHKRILKFLKLF 156 (159)
T ss_dssp ---TTCCEEEEECHHHHHHHHHHH
T ss_pred ---CCCeEEEEEeHHHHHHHHHHH
Confidence 158999999999999987653
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.69 E-value=2.8e-16 Score=141.92 Aligned_cols=132 Identities=14% Similarity=0.146 Sum_probs=106.3
Q ss_pred cccccccc-CCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcc
Q 007394 412 TVGELIDA-KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKR 490 (605)
Q Consensus 412 ~v~diM~~-~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~ 490 (605)
++++++.. ..+++++.+++++.++++.|.+++++++||+|++ ++++|+++.+|+.+.+.......
T Consensus 2 pl~~~~ig~~~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~~-----------~~~vG~it~~Dl~~~~~~~~~~~--- 67 (153)
T d2ooxe2 2 PLNQMTIGTWSNLATASMETKVYDVIKMLAEKNISAVPIVNSE-----------GTLLNVYESVDVMHLIQDGDYSN--- 67 (153)
T ss_dssp BGGGTCCSBCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEECGG-----------GBEEEEEEHHHHHHHHGGGCGGG---
T ss_pred CHHHcCCCCCCCCeEEeCcCcHHHHHHHHHHcCcceEeeeccc-----------ceEEEEEEeeeeeehhccccccc---
Confidence 34555532 2378999999999999999999999999999987 89999999999988765432111
Q ss_pred cchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccC
Q 007394 491 RTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAA 570 (605)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~ 570 (605)
...+..+.+ ...+.|..++.++++++++.++++.|.+++.+++||||+
T Consensus 68 --------~~~~v~~~~--------------------~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~---- 115 (153)
T d2ooxe2 68 --------LDLSVGEAL--------------------LKRPANFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVDE---- 115 (153)
T ss_dssp --------GGSBHHHHH--------------------HTSCCCSSCCCEECTTCBHHHHHHHHHHSCCSEEEEECT----
T ss_pred --------cccchhhhe--------------------eeeecccCCCeEECCCCcHHHHHHhhhhceeeEEEEEcC----
Confidence 011222222 245566778889999999999999999999999999998
Q ss_pred CCCceEEEEeHHHhHHHHhh
Q 007394 571 GVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 571 ~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++|+++++..
T Consensus 116 -~~~lvGivT~~Dil~~~~~ 134 (153)
T d2ooxe2 116 -NLKLEGILSLADILNYIIY 134 (153)
T ss_dssp -TCBEEEEEEHHHHHHHHHS
T ss_pred -CCEEEEEEEHHHHHHHHHc
Confidence 8999999999999998865
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.69 E-value=5.6e-17 Score=150.50 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=116.7
Q ss_pred cccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhh
Q 007394 407 WMRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFL 486 (605)
Q Consensus 407 ~l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~ 486 (605)
.+++.++.|+|.+..+++++++++++.+|++.|.+++++++||+|++. ++++|+++.+|+++.+......
T Consensus 16 fl~~~~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~~~----------~~~vGiis~~Di~~~l~~~~~~ 85 (179)
T d2ooxe1 16 FIRSRTSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDSEA----------NKFAGLLTMADFVNVIKYYYQS 85 (179)
T ss_dssp HHHHSBHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEETTT----------TEEEEEECHHHHHHHHHHHHHH
T ss_pred HHcCCEeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeCCC----------CeeEEEEeechHHHHHHhcccc
Confidence 356778999997544799999999999999999999999999998531 7999999999999877642211
Q ss_pred hhcccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccc
Q 007394 487 QEKRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPK 566 (605)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~ 566 (605)
..... ...+.. ..............++|.++++++++++|+.+++++|.+++++++||+|+
T Consensus 86 ~~~~~----------~~~~~~---------~~~~~~~~~~~~~~~~~~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~ 146 (179)
T d2ooxe1 86 SSFPE----------AIAEID---------KFRLLGLREVERKIGAIPPETIYVHPMHSLMDACLAMSKSRARRIPLIDV 146 (179)
T ss_dssp CSCGG----------GGGGGG---------GSBHHHHHHHHHHTTCSCSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEE
T ss_pred ccchh----------hhhhhh---------ccchhhhcccceeeeecccCceEECCCCcHHHHHHHhhhcCceEEEEEec
Confidence 11000 000000 00011111223355678899999999999999999999999999999998
Q ss_pred cccCCCCceEEEEeHHHhHHHHhhhh
Q 007394 567 YEAAGVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 567 ~~~~~~g~lvGiITr~Dll~~~~~~~ 592 (605)
++..++++++|+||++||++++..+.
T Consensus 147 ~g~~~~~~vvgiiT~~dIlk~l~~~~ 172 (179)
T d2ooxe1 147 DGETGSEMIVSVLTQYRILKFISMNC 172 (179)
T ss_dssp CTTTCCEEEEEEEEHHHHHHHHHTTC
T ss_pred CCCcCCCcEEEEEeHHHHHHHHHHhh
Confidence 44444568999999999999887644
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=6.9e-17 Score=144.49 Aligned_cols=138 Identities=17% Similarity=0.176 Sum_probs=106.3
Q ss_pred ccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhccc
Q 007394 412 TVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRR 491 (605)
Q Consensus 412 ~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~ 491 (605)
++.++|++ +++++++++++.++++.|.+++++.+||+|++ ++++|+++.+|+.+.+..........
T Consensus 5 ~v~~~m~~--~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~~-----------~~~vGiis~~Dl~~~~~~~~~~~~~~- 70 (145)
T d1o50a3 5 DVCKLISL--KPTVVEEDTPIEEIVDRILEDPVTRTVYVARD-----------NKLVGMIPVMHLLKVSGFHFFGFIPK- 70 (145)
T ss_dssp HHTTSSCC--CCEEECTTCBHHHHHHHHHHSTTCCEEEEEET-----------TEEEEEEEHHHHHHHHHHHHHCCCC--
T ss_pred EhHHhCCC--CCEEECCcCcHHHHHHHHHHcCCceEEEeccC-----------cceeeeeccchhhhhhhcccccccch-
Confidence 46778988 89999999999999999999999999999987 89999999999988765432211100
Q ss_pred chhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCC
Q 007394 492 TEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAG 571 (605)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~ 571 (605)
.+... ...+.. ....+.++| +++.++.+++++.+|+++|.+++.+++||||+
T Consensus 71 ------------~~~~~--~~~~~~--------~~~~~~~~~-~~~~~i~~~~~l~~a~~~m~~~~i~~lpVVd~----- 122 (145)
T d1o50a3 71 ------------EELIR--SSMKRL--------IAKNASEIM-LDPVYVHMDTPLEEALKLMIDNNIQEMPVVDE----- 122 (145)
T ss_dssp --------------------CCCCC--------SSCBHHHHC-BCCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----
T ss_pred ------------hHHHH--hhhhhc--------cccCHHHHc-CCCEEEcCCCCHHHHHHHHHHcCceEEEEEeC-----
Confidence 00000 000000 012234445 56778999999999999999999999999998
Q ss_pred CCceEEEEeHHHhHHHHhhh
Q 007394 572 VSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 572 ~g~lvGiITr~Dll~~~~~~ 591 (605)
+|+++|+||++|+++++.++
T Consensus 123 ~g~i~Gvit~~dil~~l~~~ 142 (145)
T d1o50a3 123 KGEIVGDLNSLEILLALWKG 142 (145)
T ss_dssp TSCEEEEEEHHHHHHHHHHS
T ss_pred CCeEEEEEEHHHHHHHHHhc
Confidence 89999999999999998764
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.66 E-value=2.7e-16 Score=139.79 Aligned_cols=126 Identities=17% Similarity=0.199 Sum_probs=97.9
Q ss_pred cccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchh
Q 007394 415 ELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEE 494 (605)
Q Consensus 415 diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~ 494 (605)
.+|.. +++++.+++++.+|++.|.+++++++||+|++ ++++|+++.+|+.+.+.+.......
T Consensus 13 ~~~~~--~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~~-----------~~~vG~it~~Di~~~~~~~~~~~~~----- 74 (140)
T d2nyca1 13 IITQD--NMKSCQMTTPVIDVIQMLTQGRVSSVPIIDEN-----------GYLINVYEAYDVLGLIKGGIYNDLS----- 74 (140)
T ss_dssp CCBCS--SCCCBCTTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHTC----CC-----
T ss_pred CccCC--CCEEEcCcCcHHHHHHHHHHcCCcEEEEEecC-----------CeEcceehhhHHHHHHhhccccccc-----
Confidence 35666 89999999999999999999999999999987 8999999999999877653311100
Q ss_pred HHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCc
Q 007394 495 WEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 574 (605)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~ 574 (605)
....+ .......+..++.++++++++.+++++|.+++.+++||||+ +|+
T Consensus 75 ------~~~~~--------------------~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd~-----~~~ 123 (140)
T d2nyca1 75 ------LSVGE--------------------ALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDD-----VGR 123 (140)
T ss_dssp ------SBHHH--------------------HHHHCC------CEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSB
T ss_pred ------cchhh--------------------hhhhhhhcccccEEECCCCcHHHHHHHHHhcCeeEEEEEeC-----CCe
Confidence 00011 11234445677889999999999999999999999999998 899
Q ss_pred eEEEEeHHHhHHHHh
Q 007394 575 VVGILTRQDLRAFNI 589 (605)
Q Consensus 575 lvGiITr~Dll~~~~ 589 (605)
++|+||++|+++++.
T Consensus 124 l~GiIt~~Dii~~l~ 138 (140)
T d2nyca1 124 LVGVLTLSDILKYIL 138 (140)
T ss_dssp EEEEEEHHHHHHHHH
T ss_pred EEEEEEHHHHHHHHh
Confidence 999999999999875
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.65 E-value=2.5e-16 Score=140.87 Aligned_cols=134 Identities=13% Similarity=0.118 Sum_probs=106.6
Q ss_pred cccccccccc-CCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhh
Q 007394 410 TLTVGELIDA-KPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQE 488 (605)
Q Consensus 410 ~~~v~diM~~-~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~ 488 (605)
..+++|++.. ..+++++++++++.||++.|.+++++++||+|++ ++++|+++..|++..+........
T Consensus 8 ~~~l~~l~i~~~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~~-----------~~~~Gvit~~di~~~l~~~~~~~~ 76 (145)
T d2v8qe1 8 SKSLEELQIGTYANIAMVRTTTPVYVALGIFVQHRVSALPVVDEK-----------GRVVDIYSKFDVINLAAEKTYNNL 76 (145)
T ss_dssp GSBHHHHTCSBCSSCCCEETTCBHHHHHHHHHHHCCSEEEEECTT-----------SBEEEEEEGGGTGGGGGSSCCCCC
T ss_pred hCCHHHHcCCCCCCceEEcCcCcHHHHHHHHHHcCCCcccccccC-----------CceEEEEEcchhhhhhhcccccch
Confidence 3467766432 1278999999999999999999999999999987 899999999999765443211100
Q ss_pred cccchhHHHhhhcchhHhhhhcCcccccccChhhhhhhcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccc
Q 007394 489 KRRTEEWEVREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYE 568 (605)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~ 568 (605)
..... ......+.|.+++.++.+++++.+++++|.+++.+++||+|+
T Consensus 77 -----------~~~v~--------------------~~~~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-- 123 (145)
T d2v8qe1 77 -----------DVSVT--------------------KALQHRSHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVDE-- 123 (145)
T ss_dssp -----------SSBHH--------------------HHGGGCCSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEECT--
T ss_pred -----------hhhhh--------------------hccchhhhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEcc--
Confidence 00111 112356677889999999999999999999999999999998
Q ss_pred cCCCCceEEEEeHHHhHHHHhh
Q 007394 569 AAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 569 ~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+|+++|+||++||++++..
T Consensus 124 ---~g~l~GiVt~~dii~~lv~ 142 (145)
T d2v8qe1 124 ---HDVVKGIVSLSDILQALVL 142 (145)
T ss_dssp ---TSBEEEEEEHHHHHHHHHS
T ss_pred ---CCEEEEEEEHHHHHHHHHh
Confidence 8999999999999998864
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.62 E-value=1.9e-17 Score=143.22 Aligned_cols=116 Identities=16% Similarity=0.259 Sum_probs=60.6
Q ss_pred cccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhhchhhhhcccchhHH
Q 007394 417 IDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKKKWFLQEKRRTEEWE 496 (605)
Q Consensus 417 M~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~~~~~~~~~~~~~~~ 496 (605)
|.+ +++++++++++.|+.+.|.+++++++||+|++ ..+++++|++|.+|+........
T Consensus 2 m~~--~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~--------~~~~~lvGivT~~Di~~~~~~~~------------ 59 (120)
T d1jr1a4 2 FIT--DPVVLSPKDRVRDVFEAKARHGFCGIPITDTG--------RMGSRLVGIISSRDIDFLKEEEH------------ 59 (120)
T ss_dssp EEC--TTCC----CCCC--CCBC-----------------------CTTCCC----------------------------
T ss_pred ccc--CCEEECCcCCHHHHHHHHHHhCCCeEEEeecc--------ccCCeEeeeeeeeeeeehhcccc------------
Confidence 445 66799999999999999999999999999863 12379999999999853221100
Q ss_pred HhhhcchhHhhhhcCcccccccChhhhhhhcccccc--cccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCc
Q 007394 497 VREKFSWVELAEREGKIEEVAVTSEEMEMYIDLHPL--TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSP 574 (605)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i--m~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~ 574 (605)
...+.++ |.+++.++++++++.+|.++|.+++++++||||+ +|+
T Consensus 60 -----------------------------~~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~-----~~~ 105 (120)
T d1jr1a4 60 -----------------------------DRFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNE-----NDE 105 (120)
T ss_dssp -----------------------------------CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEET-----TTE
T ss_pred -----------------------------CceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcC-----CCE
Confidence 0112233 3456789999999999999999999999999998 899
Q ss_pred eEEEEeHHHhHHHH
Q 007394 575 VVGILTRQDLRAFN 588 (605)
Q Consensus 575 lvGiITr~Dll~~~ 588 (605)
++|+||++||+++.
T Consensus 106 lvGiiT~~Di~k~~ 119 (120)
T d1jr1a4 106 LVAIIARTDLKKNR 119 (120)
T ss_dssp EEEEECHHHHHHHH
T ss_pred EEEEEEHHHhhhcc
Confidence 99999999999863
|
| >d1otsa_ f.20.1.1 (A:) Clc chloride channel {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: Clc chloride channel superfamily: Clc chloride channel family: Clc chloride channel domain: Clc chloride channel species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=8.5e-11 Score=123.71 Aligned_cols=190 Identities=14% Similarity=0.134 Sum_probs=125.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhc--cchhhHHHHHHHHHHHhhhhh-----ccccccccCC
Q 007394 149 RYHVMDIIPVTLIGIIGGILGGLYNHILHKVLRLYNL-INQK--GKMHKLLLALSVSVFTSVCQY-----CLPFLADCKA 220 (605)
Q Consensus 149 ~~~~~~l~~~illgi~~gl~g~~f~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~l~~~~~~-----~~p~~~~~~~ 220 (605)
...+.-+.+.+++|+++|+.+.+|...++++++++.. .... ..+..+....+++.+.+.+.. +.|..
T Consensus 14 ~~~l~~~~la~liGi~~gl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~----- 88 (444)
T d1otsa_ 14 KTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEA----- 88 (444)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHCGGG-----
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHHHHHHHHhhCCcc-----
Confidence 3456677778899999999999999999998887632 1111 111122222222222222222 12222
Q ss_pred CCCCCCCCCCCCCCCCCcccccCCCCCchhhHHHhhcCchhHHHhhhcCCCCCCcchhHHHHHHHHHHHHHHHHhcCCCC
Q 007394 221 CDPSFPETCPTNGRSGNFKQFNCPNGHYNDLATLLLTTNDDAVRNIFSSNTPTEFQPSSILIFFILYCILGLITFGIAVP 300 (605)
Q Consensus 221 ~~~~~~~~~~~~g~~g~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~~~~k~~~t~~t~g~g~~ 300 (605)
.| +| -.++ ....+.. ....++. ....|++.+.+++++|.+
T Consensus 89 -----------~G-sG-----------ipev------------~~~l~~~-~~~~~~r----~~~~k~~~~~~sl~~G~s 128 (444)
T d1otsa_ 89 -----------GG-SG-----------IPEI------------EGALEDQ-RPVRWWR----VLPVKFFGGLGTLGGGMV 128 (444)
T ss_dssp -----------SS-CS-----------HHHH------------HHHHTTC-SCCCHHH----HHHHHHHHHHHHHHTTCS
T ss_pred -----------CC-CC-----------HHHH------------HHHHhCC-CCCccHH----HHHHHHHHHHHHHhcCCC
Confidence 11 01 1111 1111111 1122222 345799999999999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHhhcccCCCcHHHHHHHHHhhhhhhcchhHHHHHHHHHHh-cCCc----chHHHHHHHHH
Q 007394 301 SGLFLPIILMGSAYGRLLGMAMGSYTNIDQGLYAVLGAASLMAGSMRMTVSLCVIFLELT-NNLL----LLPITMIVLLI 375 (605)
Q Consensus 301 gG~f~Psl~iGa~~G~~~g~~~~~~~~~~~~~~a~~G~aa~~a~~~~~pls~~vi~~E~t-g~~~----~l~p~~~a~~~ 375 (605)
.|.+.|+..+|+++|..+++.+......+...+..+|++|.++++.++|++++++.+|.. .++. .+.|.+.++++
T Consensus 129 ~G~EGP~v~iga~i~~~l~~~~~~~~~~~~r~l~~~GaaAglaa~F~aPlaG~lFa~E~l~~~~~~~~~~~~~~~~a~~~ 208 (444)
T d1otsa_ 129 LGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGILFIIEEMRPQFRYTLISIKAVFIGVIM 208 (444)
T ss_dssp CBSHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHTTTTSCSSSCCCCCHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHHHHHhhccCCchhhhhhhhHHHhhcchHHHHHHHHHHhhhHH
Confidence 999999999999999999998853222234678999999999999999999999999965 3332 37888888888
Q ss_pred HHHHHhhc
Q 007394 376 AKTVGDSF 383 (605)
Q Consensus 376 a~~v~~~l 383 (605)
++.+...+
T Consensus 209 ~~~~~~~~ 216 (444)
T d1otsa_ 209 STIMYRIF 216 (444)
T ss_dssp HHHHHHHH
T ss_pred Hhhheeec
Confidence 88887665
|
| >d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein VC0737 species: Vibrio cholerae [TaxId: 666]
Probab=98.63 E-value=2.5e-08 Score=87.01 Aligned_cols=60 Identities=22% Similarity=0.399 Sum_probs=55.9
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
++++|+|++++.++.+++++.+|.+.|.+++.+++||+|+ +|+++|+||.+|+++.....
T Consensus 2 i~v~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~lpVvd~-----~~~~~Giit~~dl~~~~~~~ 61 (139)
T d2o16a3 2 IKVEDMMTRHPHTLLRTHTLNDAKHLMEALDIRHVPIVDA-----NKKLLGIVSQRDLLAAQESS 61 (139)
T ss_dssp CBGGGTSEESCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHHH
T ss_pred EEHHHhCcCCCeEECCcCCHHHHHHHHHHcCCCeeeeecc-----cccccccccHHHHHHHHHhh
Confidence 4689999999999999999999999999999999999998 89999999999999877654
|
| >d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH0107 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.61 E-value=3.7e-08 Score=85.17 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=55.8
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
..+++++|++++.++++++|+.+|.+.|.+++++.+||+|+ +|+++|+||.+|+++....
T Consensus 4 ~~pV~~im~~~~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd~-----~~~~~Giit~~di~~~~~~ 63 (132)
T d2yzia1 4 KAPIKVYMTKKLLGVKPSTSVQEASRLMMEFDVGSLVVIND-----DGNVVGFFTKSDIIRRVIV 63 (132)
T ss_dssp TSBGGGTCBCCCCEECTTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHTTT
T ss_pred CCcHHHHcCCCCeEECCcCcHHHHHHHHHHcCCcEEEEecc-----cceeeeeeeHHHHHHHHhh
Confidence 35799999999999999999999999999999999999998 8999999999999987654
|
| >d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.56 E-value=3.4e-08 Score=87.80 Aligned_cols=58 Identities=21% Similarity=0.196 Sum_probs=54.3
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++++++|++++.++++++|+.+|+++|.+++++++||+|+ +|+++|+||..|+++...
T Consensus 4 ~~v~~~m~r~v~~v~~~~~l~~a~~~m~~~~~~~lPVvd~-----~~~lvG~it~~Dl~~~~~ 61 (156)
T d2yzqa1 4 VEIEPYYQRYVSIVWEGTPLKAALKALLLSNSMALPVVDS-----EGNLVGIVDETDLLRDSE 61 (156)
T ss_dssp CBSTTTSBSCCCCEETTSBHHHHHHHHHTCSSSEEEEECT-----TSCEEEEEEGGGGGGCGG
T ss_pred CCHHHHhcCCCeEECCcCcHHHHHHHHHHcCCCEEEEEeC-----CCCceeEEeeeechhhhc
Confidence 5789999999999999999999999999999999999998 899999999999987544
|
| >d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Rv2626c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.53 E-value=4.1e-08 Score=83.69 Aligned_cols=58 Identities=17% Similarity=0.183 Sum_probs=53.0
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++|+|++++.++.+++++.+|.++|.+++++.+||+|+ +|+++|+||.+|+++....
T Consensus 2 t~~diM~~~~~~v~~~~tl~~a~~~m~~~~~~~~pVvd~-----~~~~~Giit~~Di~~~~~~ 59 (123)
T d1y5ha3 2 TARDIMNAGVTCVGEHETLTAAAQYMREHDIGALPICGD-----DDRLHGMLTDRDIVIKGLA 59 (123)
T ss_dssp CHHHHSEETCCCEETTSBHHHHHHHHHHHTCSEEEEECG-----GGBEEEEEEHHHHHHTTGG
T ss_pred CHHHhcCCCCcEECCcCcHHHHHHHHHHcCCCceEEEec-----cchhhhhhhhhhHhhhhhh
Confidence 467899999999999999999999999999999999998 7899999999999875543
|
| >d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Enterococcus faecalis [TaxId: 1351]
Probab=98.49 E-value=5.4e-08 Score=83.50 Aligned_cols=60 Identities=13% Similarity=0.307 Sum_probs=55.8
Q ss_pred ccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 410 TLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 410 ~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
+.+++++|++ ++.++++++++.++.+.|.+++.+.+||||++ |+++|+||.+|+++++.+
T Consensus 64 ~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~~~~lPVVD~~-----------g~lvGiIt~~Dil~~i~e 123 (127)
T d2ouxa2 64 DTLIADILNE--RVISVHVGDDQEDVAQTIRDYDFLAVPVTDYD-----------DHLLGIVTVDDIIDVIDD 123 (127)
T ss_dssp TSBHHHHSBS--CCCCEETTSBHHHHHHHHHHHTCSEEEEECTT-----------CBEEEEEEHHHHHHHHHH
T ss_pred cEEhhhhccC--CCccCCCCCCHHHHHHHHHHhCCEEEEEEeCC-----------CEEEEEEEHHHHHHHHHH
Confidence 5689999999 89999999999999999999999999999988 999999999999987654
|
| >d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein Ta0289 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.44 E-value=1.6e-07 Score=82.04 Aligned_cols=59 Identities=20% Similarity=0.182 Sum_probs=54.9
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
++++++|++++.++++++++.+|++.|.+++.+.+||+|+ +|+++|+||..|+++....
T Consensus 3 m~v~dim~~~~~~v~~~~tl~~a~~~m~~~~~~~~~V~d~-----~~~~~Giit~~di~~~~~~ 61 (142)
T d1pvma4 3 MRVEKIMNSNFKTVNWNTTVFDAVKIMNENHLYGLVVKDD-----NGNDVGLLSERSIIKRFIP 61 (142)
T ss_dssp CBGGGTSBTTCCEEETTCBHHHHHHHHHHHTCCEEEEECT-----TSCEEEEEEHHHHHHHTGG
T ss_pred EEHHHhCCCCCcEECCcCcHHHHHHHHHHCCCceEeeecc-----CCcccceEEeechhhhhhh
Confidence 5689999999999999999999999999999999999998 7999999999999876543
|
| >d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PH1780 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.41 E-value=3.9e-08 Score=83.79 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=37.9
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhh
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~ 592 (605)
+++++|+++++++++++++.+|.++|.+++++.+||+|+ +|+++|+||.+|+++...+..
T Consensus 2 ~v~diM~~~~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd~-----~~~~~G~it~~dl~~~~~~~~ 61 (122)
T d2yzqa2 2 RVKTIMTQNPVTITLPATRNYALELFKKYKVRSFPVVNK-----EGKLVGIISVKRILVNPDEEQ 61 (122)
T ss_dssp BHHHHSEESCCCEESSCC------------CCEEEEECT-----TCCEEEEEESSCC--------
T ss_pred CcccccCCCCEEECCcCcHHHHHHHHHHcCCcEEEEEec-----cccchhhhhcchhhhhhcccc
Confidence 477899999999999999999999999999999999998 899999999999998655543
|
| >d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein MTH1622 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.41 E-value=1.6e-07 Score=79.58 Aligned_cols=57 Identities=18% Similarity=0.085 Sum_probs=52.5
Q ss_pred cccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 529 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 529 v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
++|+|++++.++++++|+.||++.|.+++.+.+||+|+ |+++|+||++||++.+.+.
T Consensus 2 V~diM~~~~~~v~~~~sl~ea~~~~~~~~~~~~~V~~~------~~~~Gvit~~Di~~~l~~~ 58 (120)
T d1pbja3 2 VEDVMVTDVDTIDITASLEDVLRNYVENAKGSSVVVKE------GVRVGIVTTWDVLEAIAEG 58 (120)
T ss_dssp HHHHCBCSCCEEETTCBHHHHHHHHHHHCCCEEEEEET------TEEEEEEEHHHHHHHHHHT
T ss_pred hHHhCCCCCeEECCcCcHHHHHHHHHHcCceEEEEEeC------CcEEEEEEeeecccccccc
Confidence 67899999999999999999999999999999999875 8999999999999987654
|
| >d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0892, CBS tandem species: Thermotoga maritima [TaxId: 2336]
Probab=98.40 E-value=1.5e-07 Score=79.91 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=53.5
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++++|+++++++.+++|+.+|+++|.+.+.+.+||+|+ +|+++|+||.+|+++...+
T Consensus 2 ~v~~~m~~~~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd~-----~~~~~Gii~~~dl~~~~~~ 59 (121)
T d1vr9a3 2 KVKKWVTQDFPMVEESATVRECLHRMRQYQTNECIVKDR-----EGHFRGVVNKEDLLDLDLD 59 (121)
T ss_dssp BGGGGCBSCSCEEETTCBHHHHHHHHHHTTSSEEEEECT-----TSBEEEEEEGGGGTTSCTT
T ss_pred CchhhhcCCCeEECCCCCHHHHHHhhhhcCcEEEEEEeC-----CceeEEEeehhhhhhhhcc
Confidence 578999999999999999999999999999999999998 7999999999999875443
|
| >d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein TM0935 species: Thermotoga maritima [TaxId: 2336]
Probab=98.40 E-value=1.6e-07 Score=82.26 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=55.5
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
++.++|+++|.++.+++|+.+|.+.|.+++++++||+|+ +|+++|+||..|+++.......
T Consensus 5 ~v~~~m~~~p~~v~~~~~v~~a~~~m~~~~~~~ipVvd~-----~~~~vGiis~~Dl~~~~~~~~~ 65 (145)
T d1o50a3 5 DVCKLISLKPTVVEEDTPIEEIVDRILEDPVTRTVYVAR-----DNKLVGMIPVMHLLKVSGFHFF 65 (145)
T ss_dssp HHTTSSCCCCEEECTTCBHHHHHHHHHHSTTCCEEEEEE-----TTEEEEEEEHHHHHHHHHHHHH
T ss_pred EhHHhCCCCCEEECCcCcHHHHHHHHHHcCCceEEEecc-----Ccceeeeeccchhhhhhhcccc
Confidence 477889999999999999999999999999999999998 7999999999999987765443
|
| >d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein, CBS tandem species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]
Probab=98.39 E-value=3.7e-07 Score=80.98 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=57.3
Q ss_pred hcccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhh
Q 007394 526 YIDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 526 ~~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~ 592 (605)
.++++|+|++++.++++++++.+++++|.+++++++||+|+ .+++.++|++|+.|+++......
T Consensus 10 ~~~V~diM~~~~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~---~~~~~lvg~is~~dl~~~l~~~~ 73 (160)
T d2d4za3 10 NIQVGDIMVRDVTSIASTSTYGDLLHVLRQTKLKFFPFVDT---PDTNTLLGSIDRTEVEGLLQRRI 73 (160)
T ss_dssp SCBTTSSSBSSCCCEETTCBHHHHHHHHHHCCCSEEEEESC---TTTCBEEEEEEHHHHHHHHHHHH
T ss_pred ceEHHHhcCCCCeEECCCCcHHHHHHHHHhcCCCccccccc---cccccccccchHHHHHHHHhhcc
Confidence 36799999999999999999999999999999999999986 33578999999999998876643
|
| >d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein ST2348 species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.39 E-value=3e-07 Score=78.63 Aligned_cols=61 Identities=15% Similarity=0.130 Sum_probs=55.1
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhhC
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTAF 593 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~~ 593 (605)
..++++|++++.++++++++.+|.++|.+++++.+||+|+ ++++|+||++|+.+...++..
T Consensus 4 ~~V~d~m~~~~v~v~~~~tl~~a~~~m~~~~~~~~pV~d~------~~~~Givt~~dl~~~~~~~~~ 64 (127)
T d2ef7a1 4 EIVKEYMKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDG------NKPVGIITERDIVKAIGKGKS 64 (127)
T ss_dssp CBGGGTSBCSCCEEETTCBHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHHHHHTTCC
T ss_pred cCHHHhCCCCCeEECCcCcHHHHHHHHHHcCCceEEeecc------cchhhhcchhHHHHHHHhhcc
Confidence 3588999999999999999999999999999999999986 789999999999998765443
|
| >d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.37 E-value=1.9e-07 Score=79.79 Aligned_cols=55 Identities=20% Similarity=0.314 Sum_probs=48.3
Q ss_pred cccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 533 TNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 533 m~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
|.++|.+++|++++.+|+++|.+++++++||+|+ .++++++|+||++|+.+....
T Consensus 3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~---~~~~~lvGivt~~Di~~~~~~ 57 (126)
T d1zfja4 3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVET---LANRKLVGIITNRDMRFISDY 57 (126)
T ss_dssp TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESC---TTTCBEEEEEEHHHHHHCSCS
T ss_pred CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEee---ccCCeEEEEeEHHHHHHhhcc
Confidence 5578899999999999999999999999999986 335889999999999876543
|
| >d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Hypothetical protein YkuL species: Bacillus subtilis [TaxId: 1423]
Probab=98.36 E-value=1.7e-07 Score=80.70 Aligned_cols=58 Identities=9% Similarity=0.098 Sum_probs=51.9
Q ss_pred cccccc--ccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 528 DLHPLT--NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 528 ~v~~im--~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++++| .+...++.+++|+++|+++|.+++++++||+|+ +|+++|+||..|+++.+.+
T Consensus 3 tv~~~mip~~~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd~-----~~~~vGiit~~di~~~~~~ 62 (132)
T d1yava3 3 TVGQFMIEADKVAHVQVGNNLEHALLVLTKTGYTAIPVLDP-----SYRLHGLIGTNMIMNSIFG 62 (132)
T ss_dssp BHHHHSEEGGGSCCEETTCBHHHHHHHHHHHCCSEEEEECT-----TCBEEEEEEHHHHHHHHBC
T ss_pred CHHHccccccceEEEcCCCCHHHHHHHHHhhCCCceEEeec-----ccccccEEEcchhHHHhhc
Confidence 456676 457789999999999999999999999999998 7999999999999998764
|
| >d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.34 E-value=2.8e-07 Score=80.24 Aligned_cols=59 Identities=22% Similarity=0.258 Sum_probs=54.7
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.+++++|++++.++++++|+.+|.++|.+++.+++||+|+ +++++|++|..|+.+....
T Consensus 2 ~~V~~iMt~~v~~v~~~~tl~~a~~~m~~~~~~~ipVv~~-----~~~~~g~i~~~di~~~~~~ 60 (141)
T d3ddja1 2 FPVKVFMSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDD-----DNKVVGIVTVVNAIKQLAK 60 (141)
T ss_dssp CBHHHHSBCSCCCEETTSBHHHHHHHHHHHTCSEEEEECT-----TSCEEEEEEHHHHHHHHHH
T ss_pred EeeHHhCcCCCeEEcCcCcHHHHHHHHHHcCCCeeecccc-----cCccccccccccchhhhhc
Confidence 3688999999999999999999999999999999999998 8999999999999887653
|
| >d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein PAE2072 species: Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.29 E-value=5e-07 Score=77.50 Aligned_cols=62 Identities=8% Similarity=0.125 Sum_probs=54.5
Q ss_pred ccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhhh
Q 007394 528 DLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILTA 592 (605)
Q Consensus 528 ~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~~ 592 (605)
+++++|+++|.++++++|+.||++.|.+++.+++||+++ .++++++|++|..|+.+...+..
T Consensus 2 ~V~dim~~~~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~---d~~~~~iGi~~~~dl~~~~~~~~ 63 (131)
T d2riha1 2 RTSELLKRPPVSLPETATIREVATELAKNRVGLAVLTAR---DNPKRPVAVVSERDILRAVAQRL 63 (131)
T ss_dssp BGGGGCCSCCEEEETTCBHHHHHHHHHHHTCSEEEEEET---TEEEEEEEEEEHHHHHHHHHTTC
T ss_pred CHHHhccCCCEEECCCCcHHHHHHHHHHhCCCcEEEEEE---cCCCEEEEEEeeecccccccccc
Confidence 588999999999999999999999999999999999943 11688999999999998876543
|
| >d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Magnesium transporter MgtE species: Thermus thermophilus [TaxId: 274]
Probab=98.29 E-value=4.9e-07 Score=79.11 Aligned_cols=61 Identities=16% Similarity=0.307 Sum_probs=56.1
Q ss_pred cccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 409 RTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 409 ~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
.+.+++++|++ ++.++++++++.++++.|.+++.+.+||||++ |+++|+||.+|+++++..
T Consensus 63 ~~~~v~~im~~--~~~~v~~~~~~~~a~~~m~~~~~~~lPVVd~~-----------g~lvGiIt~~Dil~~l~~ 123 (144)
T d2yvxa2 63 PRTRVAEIMNP--KVVYVRTDTDQEEVARLMADYDFTVLPVVDEE-----------GRLVGIVTVDDVLDVLEA 123 (144)
T ss_dssp TTCBSTTTSBS--SCCCEESSCCHHHHHHHHHHSCCSEEEEECSS-----------CBEEEEEEHHHHHHHHHH
T ss_pred cccchHHhccc--CCccCCCCChHHHHHHHHHHcCCCEEEEEeEC-----------CEEEEEEEHHHHHHHHHH
Confidence 34578999999 99999999999999999999999999999998 999999999999987654
|
| >d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein SSO3205 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.23 E-value=3e-07 Score=79.41 Aligned_cols=61 Identities=13% Similarity=0.283 Sum_probs=56.1
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALK 481 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~ 481 (605)
..+.+++++|++ ++.++++++++.++.+.|.+++.+.+||+|++ |+++|+||++|+++++.
T Consensus 71 ~~~~~v~~im~~--~~~~v~~~~~l~~a~~~m~~~~i~~lpVvd~~-----------g~lvGiit~~Dil~~~~ 131 (135)
T d3ddja2 71 ISTTPIIDYMTP--NPVTVYNTSDEFTAINIMVTRNFGSLPVVDIN-----------DKPVGIVTEREFLLLYK 131 (135)
T ss_dssp HHTSBGGGTSEE--SCCCEETTSCHHHHHHHHHHHTCSEEEEECTT-----------SCEEEEEEHHHHGGGGG
T ss_pred cccCCHHHHhCC--ccceEEeccccchhhhhhhhcceeEEEEEeCC-----------CEEEEEEEHHHHHHHHH
Confidence 456789999999 99999999999999999999999999999998 99999999999987654
|
| >d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein NE2398 species: Nitrosomonas europaea [TaxId: 915]
Probab=98.20 E-value=7.3e-07 Score=76.14 Aligned_cols=55 Identities=27% Similarity=0.282 Sum_probs=48.4
Q ss_pred cccccc---cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 529 LHPLTN---TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 529 v~~im~---~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
++++|+ ++..++++++++.+|+++|.+++++++||+|+ ++++|++|++|+++...
T Consensus 4 V~dim~~k~~~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~~------~~~vGiit~~Di~~~~~ 61 (127)
T d2rc3a1 4 VKHLLQEKGHTVVAIGPDDSVFNAMQKMAADNIGALLVMKD------EKLVGILTERDFSRKSY 61 (127)
T ss_dssp HHHHHHHHCCCCCEECTTSBHHHHHHHHHHHTCSEEEEEET------TEEEEEEEHHHHHHHGG
T ss_pred HHHHHccCCCccEEECCcCcHHHHHHHHHHcCCCEEEEEEC------CeEEEEEEccchhhhhh
Confidence 555665 47889999999999999999999999999986 89999999999988654
|
| >d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Nuclear protein SNF4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.19 E-value=1.5e-06 Score=75.41 Aligned_cols=58 Identities=9% Similarity=0.093 Sum_probs=52.2
Q ss_pred cccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 529 LHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 529 v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
+..+|..++.++.+++|+.+|+++|.+++.+++||+|+ +|+++|+||..|+++.....
T Consensus 11 l~~~~~~~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd~-----~~~~vG~it~~Di~~~~~~~ 68 (140)
T d2nyca1 11 LNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDE-----NGYLINVYEAYDVLGLIKGG 68 (140)
T ss_dssp SSCCBCSSCCCBCTTSBHHHHHHHHHHHTCSEEEEECT-----TCBEEEEEEHHHHHHHHHTC
T ss_pred hCCccCCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-----CCeEcceehhhHHHHHHhhc
Confidence 44567788999999999999999999999999999998 78999999999999877543
|
| >d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.04 E-value=3.4e-06 Score=74.31 Aligned_cols=51 Identities=8% Similarity=0.077 Sum_probs=47.3
Q ss_pred cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 535 TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 535 ~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
+++.++.+++|+.+|+++|.+++++++||+|+ +++++|+||..|+++....
T Consensus 12 ~~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd~-----~~~~vG~it~~Dl~~~~~~ 62 (153)
T d2ooxe2 12 SNLATASMETKVYDVIKMLAEKNISAVPIVNS-----EGTLLNVYESVDVMHLIQD 62 (153)
T ss_dssp SSCCCBCTTSBHHHHHHHHHHTTCSEEEEECG-----GGBEEEEEEHHHHHHHHGG
T ss_pred CCCeEEeCcCcHHHHHHHHHHcCcceEeeecc-----cceEEEEEEeeeeeehhcc
Confidence 47889999999999999999999999999998 7999999999999987654
|
| >d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Type II inosine monophosphate dehydrogenase CBS domains species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=98.03 E-value=2.1e-06 Score=72.44 Aligned_cols=58 Identities=16% Similarity=0.322 Sum_probs=44.5
Q ss_pred cccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHH
Q 007394 411 LTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLA 479 (605)
Q Consensus 411 ~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~ 479 (605)
.++.++|..+.+++++++++++.++.+.|.+++.+++||+|++ ++++|+||++|+++.
T Consensus 61 ~~~~~~~~~~~~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd~~-----------~~lvGiiT~~Di~k~ 118 (120)
T d1jr1a4 61 RFLEEIMTKREDLVVAPAGITLKEANEILQRSKKGKLPIVNEN-----------DELVAIIARTDLKKN 118 (120)
T ss_dssp -----CCSBTTTSCCEETTCCHHHHHHHTCSCC---CEEEETT-----------TEEEEEECHHHHHHH
T ss_pred ceeEEEEeeccCceEECCCCCHHHHHHHHHHcCccEEEEEcCC-----------CEEEEEEEHHHhhhc
Confidence 3455565544478999999999999999999999999999998 999999999999764
|
| >d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Chloride channel protein 5, ClC-5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.94 E-value=6.7e-06 Score=73.56 Aligned_cols=61 Identities=18% Similarity=0.327 Sum_probs=55.1
Q ss_pred ccccccccccccCCCeeEEcCcccHHHHHHHHhcCCCCeeeeecCCCCCCCCCCCCCceEEEeEeHHHHHHHHhh
Q 007394 408 MRTLTVGELIDAKPPVITLSGIEKVSQIVDVLRNTTHNGFPVLDEGVVPPSGLANVATELHGLILRAHLVLALKK 482 (605)
Q Consensus 408 l~~~~v~diM~~~~~v~~v~~~~tl~~a~~~l~~~~~~~~PVvd~~~~~~~~~~~~~~~lvGiVs~~dl~~~l~~ 482 (605)
....+++++|.+ ++.++.+++++.++.+.|.+++.+.+||+|+ ++++|+||++|+++++.+
T Consensus 97 ~~~~~v~~im~~--~~~tv~~~~~l~~v~~~~~~~~~~~l~V~d~------------g~lvGiIt~~Dil~~l~~ 157 (169)
T d2j9la1 97 PPTLKLRNILDL--SPFTVTDLTPMEIVVDIFRKLGLRQCLVTHN------------GRLLGIITKKDVLKHIAQ 157 (169)
T ss_dssp CCCEECGGGEES--SCCEEETTSBHHHHHHHHHHHTCSEEEEEET------------TEEEEEEEHHHHHHHHHH
T ss_pred ccccchhhhccC--CCEEECCCCcHHHHHHHHHhcCceEEEEEEC------------CEEEEEEEHHHHHHHHHH
Confidence 346679999999 8999999999999999999999999999875 799999999999998765
|
| >d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.89 E-value=9.1e-06 Score=70.63 Aligned_cols=53 Identities=23% Similarity=0.175 Sum_probs=48.4
Q ss_pred ccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhhh
Q 007394 534 NTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNILT 591 (605)
Q Consensus 534 ~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~~ 591 (605)
.+++.++.+++|+.||+++|.+++++.+||+|+ +|+++|+||..|+++.....
T Consensus 19 ~~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd~-----~~~~~Gvit~~di~~~l~~~ 71 (145)
T d2v8qe1 19 YANIAMVRTTTPVYVALGIFVQHRVSALPVVDE-----KGRVVDIYSKFDVINLAAEK 71 (145)
T ss_dssp CSSCCCEETTCBHHHHHHHHHHHCCSEEEEECT-----TSBEEEEEEGGGTGGGGGSS
T ss_pred CCCceEEcCcCcHHHHHHHHHHcCCCccccccc-----CCceEEEEEcchhhhhhhcc
Confidence 356789999999999999999999999999998 89999999999999877654
|
| >d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.77 E-value=1.4e-05 Score=70.48 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=51.2
Q ss_pred cccccccc--cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHhh
Q 007394 527 IDLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNIL 590 (605)
Q Consensus 527 ~~v~~im~--~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~~ 590 (605)
.+++|+|. .+++++++++|+.+|++.|.+++++.+||+|+ .+++++|+||..|+++...+
T Consensus 13 ~t~~Dlm~~~~~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~----~~~~~vG~is~~Dl~~~~~~ 74 (159)
T d2v8qe2 13 HRCYDLIPTSSKLVVFDTSLQVKKAFFALVTNGVRAAPLWDS----KKQSFVGMLTITDFINILHR 74 (159)
T ss_dssp SBGGGGSCSEEEEEEEETTSBHHHHHHHHHHHTCSEEEEEET----TTTEEEEEEEHHHHHHHHHH
T ss_pred CEEEeECCCCCceEEEcCCCcHHHHHHHHHHcCCCceeEEEC----CCCcEEEEEEHHHHHHHHHh
Confidence 46778874 45678999999999999999999999999975 15889999999999987654
|
| >d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: CBS-domain pair superfamily: CBS-domain pair family: CBS-domain pair domain: Uncharacterized protein C1556.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.65 E-value=1.4e-05 Score=71.91 Aligned_cols=58 Identities=10% Similarity=0.017 Sum_probs=50.2
Q ss_pred ccccccc--cCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHHHh
Q 007394 528 DLHPLTN--TTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAFNI 589 (605)
Q Consensus 528 ~v~~im~--~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~~~ 589 (605)
.+.|+|. .+++++++++|+.+|++.|.+++++++||+|+ ++++++|++|..|+++.+.
T Consensus 21 ~~~dvm~~s~~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~----~~~~~vGiis~~Di~~~l~ 80 (179)
T d2ooxe1 21 TSYDVLPTSFRLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS----EANKFAGLLTMADFVNVIK 80 (179)
T ss_dssp BHHHHSCSEEEEEEEETTSBHHHHHHHHHHHTCSCEEEEET----TTTEEEEEECHHHHHHHHH
T ss_pred EeeeeCCCCCcEEEEECcchHHHHHHHHHHcCCCeEEEEeC----CCCeeEEEEeechHHHHHH
Confidence 4667775 46789999999999999999999999999985 1578999999999998654
|
| >d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: FliG family: FliG domain: FliG species: Thermotoga maritima [TaxId: 2336]
Probab=80.37 E-value=0.025 Score=51.22 Aligned_cols=56 Identities=11% Similarity=0.126 Sum_probs=50.7
Q ss_pred cccccccccCCceecCCCCHHHHHHHHHHcCCcEEEEccccccCCCCceEEEEeHHHhHHH
Q 007394 527 IDLHPLTNTTPYTVIESMSVAKAMVLFRQVGLRHLLVVPKYEAAGVSPVVGILTRQDLRAF 587 (605)
Q Consensus 527 ~~v~~im~~~~~~v~~~~sl~~a~~~~~~~~~~~lpVVd~~~~~~~g~lvGiITr~Dll~~ 587 (605)
..++++|.....++..+++-+++.++|.+++.+..||+|+ +++.+|.||.+|+.++
T Consensus 137 ~~l~~i~~~~~~~a~~~~~~e~~~~~l~~~~~~~~~vv~~-----e~~~~G~I~~~Die~A 192 (213)
T d1lkvx_ 137 LVLREVDTRDLALALKGASDELKEKIFKNMSKRAAALLKD-----ELEYMGPVRLKDVEEA 192 (213)
T ss_dssp HHHTTSCHHHHHHHHTTCCHHHHHHHHTTSCHHHHHHHHH-----HHHSCCCCCHHHHHHH
T ss_pred HHHHHhhhhhheeehhcCCHHHHHHHHHhCCHHHHHHHHH-----hhhhcCCCcHHHHHHH
Confidence 3468888888889999999999999999999999999998 8999999999998664
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