Citrus Sinensis ID: 007395
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | 2.2.26 [Sep-21-2011] | |||||||
| Q93Y01 | 910 | Ubiquitin carboxyl-termin | yes | no | 0.966 | 0.642 | 0.624 | 0.0 | |
| Q9ZSB5 | 923 | Ubiquitin carboxyl-termin | no | no | 0.966 | 0.633 | 0.623 | 0.0 | |
| Q9MAQ3 | 892 | Putative ubiquitin carbox | no | no | 0.932 | 0.632 | 0.609 | 0.0 | |
| O22207 | 924 | Ubiquitin carboxyl-termin | no | no | 0.920 | 0.602 | 0.521 | 1e-166 | |
| Q9C585 | 871 | Ubiquitin carboxyl-termin | no | no | 0.770 | 0.535 | 0.482 | 1e-122 | |
| Q9R085 | 952 | Ubiquitin carboxyl-termin | yes | no | 0.864 | 0.549 | 0.383 | 1e-107 | |
| Q2HJE4 | 952 | Ubiquitin carboxyl-termin | yes | no | 0.826 | 0.525 | 0.389 | 1e-106 | |
| Q8R5H1 | 981 | Ubiquitin carboxyl-termin | yes | no | 0.905 | 0.558 | 0.386 | 1e-105 | |
| Q9Y4E8 | 981 | Ubiquitin carboxyl-termin | yes | no | 0.905 | 0.558 | 0.386 | 1e-105 | |
| F6Z5C0 | 982 | Ubiquitin carboxyl-termin | no | no | 0.852 | 0.525 | 0.383 | 1e-104 |
| >sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana GN=UBP9 PE=2 SV=1 | Back alignment and function desciption |
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Score = 744 bits (1921), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/610 (62%), Positives = 467/610 (76%), Gaps = 25/610 (4%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI +S M+ENG P TP+EE++IV +L +S+ +LKEGNLYF+IS RWY SWE+Y
Sbjct: 1 MTIPNSD-FMIENGVCDFPTTPEEEKRIVSELITESEDNLKEGNLYFVISKRWYTSWEKY 59
Query: 61 VCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120
V E S +++G SS+ A RPGPIDN DII++ S+ +D ++RR L E
Sbjct: 60 V---EQSTKE------YISGESSE-ASRPGPIDNHDIIES---ESDVNDPQLRRLLMERV 106
Query: 121 DYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQTVIR 179
DYVLVPQ+VW++L WY GGP + RK+I +G VEV+ LCL L D RD S+TVIR
Sbjct: 107 DYVLVPQEVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIR 166
Query: 180 LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILL 239
L K+AS R+LYEKVC L G+ QEKA IWDYF+K+++ +S ++L+++ L MDQDILL
Sbjct: 167 LGKQASIRELYEKVCALTGVPQEKAHIWDYFDKRKNGLLDSLSYKSLEESSLHMDQDILL 226
Query: 240 EVQ--VDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGST 297
EV + +M STGN+LALVP+EPSRSS+TIAGGP LSNGH+T F+ +P
Sbjct: 227 EVDGSSSSQSAMSSTGNELALVPLEPSRSSVTIAGGPTLSNGHSTTSNFSLFP------R 280
Query: 298 FMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDEIN 357
DDG +S + KGEKGGLAGL NLGNTCFMNSALQCL HTP + +YFL DYSD+IN
Sbjct: 281 ITSEDDGSNSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDDIN 340
Query: 358 TENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAF 417
+NPLGM GELA+AFGDLL+KLWSSGR +VAPRAFK KLARFAPQFSGYNQHDSQELLAF
Sbjct: 341 RDNPLGMCGELAIAFGDLLKKLWSSGRNSVAPRAFKTKLARFAPQFSGYNQHDSQELLAF 400
Query: 418 LLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLV 477
LLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARNDS+IVDV QGQYKSTLV
Sbjct: 401 LLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKSTLV 460
Query: 478 CPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLIL 537
CP C K+SITFDPFMYL++PLPST+TR+MTVTVFY +GS LPMP+TV + K+G +DLI
Sbjct: 461 CPACGKISITFDPFMYLSVPLPSTLTRSMTVTVFYCDGSHLPMPYTVIVPKNGSIRDLIT 520
Query: 538 ALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDR--KQGGKIK 595
AL TAC L DE LLLAEVY+H+IF++FENP + +SSIKDDEHIVAYR ++ K GK K
Sbjct: 521 ALGTACLLAEDESLLLAEVYDHKIFKYFENPLDSLSSIKDDEHIVAYRLNQMPKGSGKAK 580
Query: 596 LEIVNRWQEK 605
LEI++ Q++
Sbjct: 581 LEILHGGQKR 590
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Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Arabidopsis thaliana (taxid: 3702) EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2 |
| >sp|Q9ZSB5|UBP10_ARATH Ubiquitin carboxyl-terminal hydrolase 10 OS=Arabidopsis thaliana GN=UBP10 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9MAQ3|UBP11_ARATH Putative ubiquitin carboxyl-terminal hydrolase 11 OS=Arabidopsis thaliana GN=UBP11 PE=3 SV=2 | Back alignment and function description |
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| >sp|O22207|UBP5_ARATH Ubiquitin carboxyl-terminal hydrolase 5 OS=Arabidopsis thaliana GN=UBP5 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9C585|UBP8_ARATH Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana GN=UBP8 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q9R085|UBP15_RAT Ubiquitin carboxyl-terminal hydrolase 15 OS=Rattus norvegicus GN=Usp15 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q2HJE4|UBP15_BOVIN Ubiquitin carboxyl-terminal hydrolase 15 OS=Bos taurus GN=USP15 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q8R5H1|UBP15_MOUSE Ubiquitin carboxyl-terminal hydrolase 15 OS=Mus musculus GN=Usp15 PE=2 SV=1 | Back alignment and function description |
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| >sp|Q9Y4E8|UBP15_HUMAN Ubiquitin carboxyl-terminal hydrolase 15 OS=Homo sapiens GN=USP15 PE=1 SV=3 | Back alignment and function description |
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| >sp|F6Z5C0|UBP15_XENTR Ubiquitin carboxyl-terminal hydrolase 15 OS=Xenopus tropicalis GN=usp15 PE=2 SV=2 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| 359473972 | 1013 | PREDICTED: ubiquitin carboxyl-terminal h | 0.993 | 0.593 | 0.711 | 0.0 | |
| 297742456 | 944 | unnamed protein product [Vitis vinifera] | 0.993 | 0.636 | 0.705 | 0.0 | |
| 255555787 | 938 | Ubiquitin carboxyl-terminal hydrolase, p | 0.993 | 0.640 | 0.668 | 0.0 | |
| 224117792 | 942 | predicted protein [Populus trichocarpa] | 0.975 | 0.626 | 0.670 | 0.0 | |
| 224056675 | 933 | predicted protein [Populus trichocarpa] | 0.973 | 0.631 | 0.665 | 0.0 | |
| 356576624 | 933 | PREDICTED: ubiquitin carboxyl-terminal h | 0.981 | 0.636 | 0.672 | 0.0 | |
| 356576622 | 928 | PREDICTED: ubiquitin carboxyl-terminal h | 0.981 | 0.640 | 0.672 | 0.0 | |
| 449507201 | 915 | PREDICTED: LOW QUALITY PROTEIN: ubiquiti | 0.990 | 0.654 | 0.665 | 0.0 | |
| 449456269 | 915 | PREDICTED: ubiquitin carboxyl-terminal h | 0.990 | 0.654 | 0.663 | 0.0 | |
| 356535266 | 931 | PREDICTED: ubiquitin carboxyl-terminal h | 0.978 | 0.635 | 0.673 | 0.0 |
| >gi|359473972|ref|XP_002279130.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 901 bits (2328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 436/613 (71%), Positives = 516/613 (84%), Gaps = 12/613 (1%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI DS MMENGGSCLP TP++E+QIV DL N+S+ LKEGNLY+++S RW+ SW+RY
Sbjct: 71 MTIADSG-FMMENGGSCLPYTPEQEKQIVDDLMNKSESSLKEGNLYYVVSNRWFTSWQRY 129
Query: 61 VC---GDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLE 117
+ G+ P ++S DS ++ V SK AERPGPIDNSDI+ NGN E DDLE+ R LE
Sbjct: 130 IGQGNGEYPINGHLS-DSQRLDAVPSKTAERPGPIDNSDIVLNGN-ECELDDLEILRTLE 187
Query: 118 EGQDYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQT 176
EG+DYVLVPQ+VWEKLF WYKGGPALPRKMIS+GI ++K VE++ LCLKL DSRDNSQ+
Sbjct: 188 EGRDYVLVPQEVWEKLFDWYKGGPALPRKMISQGITHKKFMVEIYRLCLKLTDSRDNSQS 247
Query: 177 VIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQD 236
VIRLSKKAS +LYE+VC L+ +EQEKARIWDYFNK R + L S+QTL+++ LQMDQD
Sbjct: 248 VIRLSKKASVHELYERVCTLKVVEQEKARIWDYFNK-RKQAILVASNQTLEESNLQMDQD 306
Query: 237 ILLEVQVD----NGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGS 292
ILLEVQ+D +G MDSTGN+LALVP+EP RSS++IAGGP LSNG++ + N Y GS
Sbjct: 307 ILLEVQLDGYWPSGFGMDSTGNELALVPMEPPRSSVSIAGGPTLSNGYSKVHTSNLYQGS 366
Query: 293 SFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGDY 352
GSTF DM+DGYD + KG++GGLAGLQNLGNTCFMNSA+QCLVHTP + +YFL DY
Sbjct: 367 PLGSTFTDMEDGYDVLRSVAKGDRGGLAGLQNLGNTCFMNSAIQCLVHTPPIFEYFLQDY 426
Query: 353 SDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQ 412
++EIN +NPLGM+GELA AFG+LLRKLWSSGR VAPRAFKGKLARFAPQFSGYNQHDSQ
Sbjct: 427 TEEINKQNPLGMNGELAFAFGELLRKLWSSGRTPVAPRAFKGKLARFAPQFSGYNQHDSQ 486
Query: 413 ELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQY 472
ELLAFLLDGLHEDLNRVKQKPYIE KDS GRPDEEVA+ECW+NHKARNDSLIVDV QGQY
Sbjct: 487 ELLAFLLDGLHEDLNRVKQKPYIETKDSNGRPDEEVADECWRNHKARNDSLIVDVCQGQY 546
Query: 473 KSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCC 532
KSTLVCPVCSK+SITFDPFMYL+LPLPSTVTR MTVTVFY +GSGLPMP+TVT++KHG C
Sbjct: 547 KSTLVCPVCSKISITFDPFMYLSLPLPSTVTRIMTVTVFYGDGSGLPMPYTVTVLKHGYC 606
Query: 533 KDLILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDRKQGG 592
KDL AL+ ACCLK DE LLLAEVY H+I+R+ ENP+EL+++IKD+EHIVAYR +K+ G
Sbjct: 607 KDLSQALAAACCLKSDENLLLAEVYEHRIYRYIENPSELLTNIKDEEHIVAYRLPKKRAG 666
Query: 593 KIKLEIVNRWQEK 605
+LEI++R Q++
Sbjct: 667 LTRLEIIHRCQQQ 679
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742456|emb|CBI34605.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|255555787|ref|XP_002518929.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] gi|223541916|gb|EEF43462.1| Ubiquitin carboxyl-terminal hydrolase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|224117792|ref|XP_002317669.1| predicted protein [Populus trichocarpa] gi|222860734|gb|EEE98281.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224056675|ref|XP_002298967.1| predicted protein [Populus trichocarpa] gi|222846225|gb|EEE83772.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|356576624|ref|XP_003556430.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356576622|ref|XP_003556429.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449507201|ref|XP_004162960.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 9-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449456269|ref|XP_004145872.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 9-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356535266|ref|XP_003536169.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 10-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 605 | ||||||
| TAIR|locus:2139202 | 923 | UBP9 "AT4G10570" [Arabidopsis | 0.965 | 0.632 | 0.612 | 2.9e-190 | |
| TAIR|locus:2139222 | 910 | UBP10 "AT4G10590" [Arabidopsis | 0.958 | 0.637 | 0.612 | 1.6e-189 | |
| TAIR|locus:2037985 | 892 | UBP11 "AT1G32850" [Arabidopsis | 0.945 | 0.641 | 0.597 | 1.8e-181 | |
| TAIR|locus:2058490 | 924 | UBP5 "ubiquitin-specific prote | 0.965 | 0.632 | 0.5 | 2.3e-149 | |
| ZFIN|ZDB-GENE-041008-187 | 1009 | usp4 "ubiquitin specific prote | 0.917 | 0.550 | 0.398 | 9.1e-100 | |
| UNIPROTKB|E1C719 | 953 | USP15 "Ubiquitin carboxyl-term | 0.438 | 0.278 | 0.525 | 7.1e-99 | |
| UNIPROTKB|F1NFR2 | 955 | USP15 "Ubiquitin carboxyl-term | 0.438 | 0.277 | 0.525 | 7.1e-99 | |
| UNIPROTKB|J9PBI4 | 953 | USP15 "Ubiquitin carboxyl-term | 0.438 | 0.278 | 0.525 | 7.6e-99 | |
| UNIPROTKB|F1SKD5 | 982 | LOC100737425 "Ubiquitin carbox | 0.889 | 0.547 | 0.386 | 1.7e-98 | |
| UNIPROTKB|Q9Y4E8 | 981 | USP15 "Ubiquitin carboxyl-term | 0.887 | 0.547 | 0.384 | 4.5e-98 |
| TAIR|locus:2139202 UBP9 "AT4G10570" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1844 (654.2 bits), Expect = 2.9e-190, P = 2.9e-190
Identities = 375/612 (61%), Positives = 457/612 (74%)
Query: 1 MTIRDSSVLMMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERY 60
MTI +S M+ENG LP TP+EE++IV +L ++S+ +LK+GNLYF+IS RWY SW+ Y
Sbjct: 1 MTIPNSD-FMLENGVCDLPFTPEEEKRIVSELTSESEDNLKQGNLYFVISKRWYTSWQEY 59
Query: 61 VCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQ 120
V E S + S G SS+ A RPGPIDN DII++ S+ +D ++RR L EG+
Sbjct: 60 V---ENSANECS------TGESSE-APRPGPIDNHDIIES---DSDINDPQLRRLLVEGE 106
Query: 121 DYVLVPQQVWEKLFCWYKGGPALPRKMISEGIVNEK-RVEVFXLCLKLIDSRDNSQTVIR 179
DYVLVP+QVW++L WY GGP + RK+I +G VEV+ LCL L D RD S+TVIR
Sbjct: 107 DYVLVPKQVWKRLVEWYSGGPPIERKLICQGFYTRSYSVEVYPLCLMLTDGRDESRTVIR 166
Query: 180 LSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLD-VSDQTLDDAMLQMDQDIL 238
L K+AS R+LYEKVC + G+ QEKA IWDYF+K R LD +S ++L+++ L MDQDIL
Sbjct: 167 LGKQASIRELYEKVCAMTGVPQEKAHIWDYFDK-RKNGLLDPLSYKSLEESSLHMDQDIL 225
Query: 239 LEVQVDNGIS---MDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFG 295
+EV + S M STGN+LALVP+EPSRS +TIAGGP LSNGH+T F+ +P
Sbjct: 226 VEVDGLSSSSQSAMSSTGNELALVPLEPSRSIVTIAGGPTLSNGHSTTSNFSLFP----- 280
Query: 296 STFMDMDDGYDSYNTXXXXXXXXXXXXQNLGNTCFMNSALQCLVHTPDLAQYFLGDYSDE 355
DDG DS + NLGNTCFMNSALQCL HTP + +YFL DYSD+
Sbjct: 281 -RITSEDDGRDSLSILGKGEKGGLAGLSNLGNTCFMNSALQCLAHTPPIVEYFLQDYSDD 339
Query: 356 INTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELL 415
IN +NPLGM GELA+AFGDLL+KLWSSGR AVAPRAFK KLARFAPQFSGYNQHDSQELL
Sbjct: 340 INRDNPLGMCGELAIAFGDLLKKLWSSGRNAVAPRAFKTKLARFAPQFSGYNQHDSQELL 399
Query: 416 AFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKST 475
AFLLDGLHEDLN+VK+KPYIE+KDS RPD+EVA E W HKARNDS+IVDV QGQYKST
Sbjct: 400 AFLLDGLHEDLNKVKRKPYIELKDSDSRPDDEVAEELWNYHKARNDSVIVDVCQGQYKST 459
Query: 476 LVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDL 535
LVCPVC K+SITFDPFMYL++PLPST+TR+MT+TVFY +GS LPMP+TV + K G +DL
Sbjct: 460 LVCPVCGKISITFDPFMYLSVPLPSTLTRSMTITVFYCDGSRLPMPYTVIVPKQGSIRDL 519
Query: 536 ILALSTACCLKIDEGLLLAEVYNHQIFRFFENPAELISSIKDDEHIVAYRFDR--KQGGK 593
I AL TACCL DE LLLAEVY+H+IFR+FE P + +S+IKDDEHIVAYR ++ K K
Sbjct: 520 ITALGTACCLAEDESLLLAEVYDHKIFRYFEIPLDSLSAIKDDEHIVAYRLNQIPKGSRK 579
Query: 594 IKLEIVNRWQEK 605
KLEI++ QE+
Sbjct: 580 AKLEILHGGQER 591
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| TAIR|locus:2139222 UBP10 "AT4G10590" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2037985 UBP11 "AT1G32850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2058490 UBP5 "ubiquitin-specific protease 5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-041008-187 usp4 "ubiquitin specific protease 4 (proto-oncogene)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1C719 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NFR2 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| UNIPROTKB|J9PBI4 USP15 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SKD5 LOC100737425 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9Y4E8 USP15 "Ubiquitin carboxyl-terminal hydrolase 15" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q93Y01 | UBP9_ARATH | 3, ., 4, ., 1, 9, ., 1, 2 | 0.6245 | 0.9669 | 0.6428 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.19 | 0.921 |
| 3rd Layer | 3.4.19.12 | 0.914 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 605 | |||
| COG5560 | 823 | COG5560, UBP12, Ubiquitin C-terminal hydrolase [Po | 7e-90 | |
| pfam00443 | 313 | pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol | 1e-52 | |
| COG5533 | 415 | COG5533, UBP5, Ubiquitin C-terminal hydrolase [Pos | 3e-39 | |
| cd02661 | 304 | cd02661, Peptidase_C19E, A subfamily of Peptidase | 1e-31 | |
| cd02660 | 328 | cd02660, Peptidase_C19D, A subfamily of Peptidase | 4e-25 | |
| pfam06337 | 86 | pfam06337, DUSP, DUSP domain | 3e-24 | |
| smart00695 | 88 | smart00695, DUSP, Domain in ubiquitin-specific pro | 5e-24 | |
| cd02667 | 279 | cd02667, Peptidase_C19K, A subfamily of Peptidase | 3e-19 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 7e-19 | |
| cd02657 | 305 | cd02657, Peptidase_C19A, A subfamily of Peptidase | 2e-15 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 3e-15 | |
| cd02669 | 440 | cd02669, Peptidase_C19M, A subfamily of Peptidase | 3e-13 | |
| cd02658 | 311 | cd02658, Peptidase_C19B, A subfamily of Peptidase | 4e-13 | |
| cd02664 | 327 | cd02664, Peptidase_C19H, A subfamily of Peptidase | 2e-12 | |
| cd02671 | 332 | cd02671, Peptidase_C19O, A subfamily of Peptidase | 1e-09 | |
| cd02663 | 300 | cd02663, Peptidase_C19G, A subfamily of Peptidase | 5e-09 | |
| cd02659 | 334 | cd02659, peptidase_C19C, A subfamily of Peptidase | 1e-08 | |
| cd02668 | 324 | cd02668, Peptidase_C19L, A subfamily of Peptidase | 6e-08 | |
| cd02674 | 230 | cd02674, Peptidase_C19R, A subfamily of peptidase | 8e-08 | |
| cd02257 | 255 | cd02257, Peptidase_C19, Peptidase C19 contains ubi | 1e-06 | |
| COG5207 | 749 | COG5207, UBP14, Isopeptidase T [Posttranslational | 1e-06 | |
| pfam13423 | 296 | pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydr | 3e-06 | |
| cd02662 | 240 | cd02662, Peptidase_C19F, A subfamily of Peptidase | 7e-05 |
| >gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 295 bits (756), Expect = 7e-90
Identities = 159/496 (32%), Positives = 216/496 (43%), Gaps = 83/496 (16%)
Query: 41 KEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQN 100
K+ + + WY D S PGPI I+
Sbjct: 42 KQCEYAVIFAYAWYEGMFDRASCDGGS---------------------PGPIVQGPIV-- 78
Query: 101 GNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWY-KGGPALPRKMISEGIVNEKR-- 157
+ + ++++L EG DY ++ VW+ L WY G P I+ + +E
Sbjct: 79 -----DFEPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITP--RITVLLPSESAPE 131
Query: 158 VEVFXLCLKL-----IDSRDNSQTV----IRLSKKASTRQLYEKVCKLRGIEQEKARIWD 208
VE + + KL I+ + S + R L E+V + R+WD
Sbjct: 132 VESYPVVFKLHWLFSINGSLINLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWD 191
Query: 209 YFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSL 268
+ D + +L + D + L+ + P
Sbjct: 192 VVPEIMGLR--LGLDSFFRRYRVLASDGRVLHPLTRLELFEDRSVLLLSKITRNPD---- 245
Query: 269 TIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQNLGNT 328
S N+ + G GL+NLGNT
Sbjct: 246 ----WLVDSIVDDHNRSINK---------------------------EAGTCGLRNLGNT 274
Query: 329 CFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAV 387
C+MNSALQCL+HT +L YFL D Y + IN ENPLGMHG +A A+ DL+++L+ A
Sbjct: 275 CYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAF 334
Query: 388 APRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPDEE 447
P FK + F +FSGY+Q DSQE +AFLLDGLHEDLNR+ +KPY D D
Sbjct: 335 TPSGFKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVV 394
Query: 448 V---ANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTR 504
V A ECW H RNDS+I D+FQG YKSTL CP C VSITFDPFM LTLPLP ++
Sbjct: 395 VKKKAKECWWEHLKRNDSIITDLFQGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVW 454
Query: 505 TMTVTVFYANGSGLPM 520
T+ VF +G P+
Sbjct: 455 KHTIVVFPESGRRQPL 470
|
Length = 823 |
| >gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|218995 pfam06337, DUSP, DUSP domain | Back alignment and domain information |
|---|
| >gnl|CDD|197831 smart00695, DUSP, Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| COG5560 | 823 | UBP12 Ubiquitin C-terminal hydrolase [Posttranslat | 100.0 | |
| KOG1870 | 842 | consensus Ubiquitin C-terminal hydrolase [Posttran | 100.0 | |
| COG5533 | 415 | UBP5 Ubiquitin C-terminal hydrolase [Posttranslati | 99.98 | |
| cd02669 | 440 | Peptidase_C19M A subfamily of Peptidase C19. Pepti | 99.96 | |
| cd02663 | 300 | Peptidase_C19G A subfamily of Peptidase C19. Pepti | 99.96 | |
| KOG1865 | 545 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.96 | |
| cd02658 | 311 | Peptidase_C19B A subfamily of Peptidase C19. Pepti | 99.95 | |
| cd02660 | 328 | Peptidase_C19D A subfamily of Peptidase C19. Pepti | 99.95 | |
| cd02657 | 305 | Peptidase_C19A A subfamily of Peptidase C19. Pepti | 99.95 | |
| cd02671 | 332 | Peptidase_C19O A subfamily of Peptidase C19. Pepti | 99.95 | |
| cd02668 | 324 | Peptidase_C19L A subfamily of Peptidase C19. Pepti | 99.94 | |
| KOG1868 | 653 | consensus Ubiquitin C-terminal hydrolase [Posttran | 99.94 | |
| cd02661 | 304 | Peptidase_C19E A subfamily of Peptidase C19. Pepti | 99.94 | |
| cd02666 | 343 | Peptidase_C19J A subfamily of Peptidase C19. Pepti | 99.94 | |
| cd02667 | 279 | Peptidase_C19K A subfamily of Peptidase C19. Pepti | 99.92 | |
| cd02664 | 327 | Peptidase_C19H A subfamily of Peptidase C19. Pepti | 99.92 | |
| cd02659 | 334 | peptidase_C19C A subfamily of Peptidase C19. Pepti | 99.91 | |
| PF06337 | 99 | DUSP: DUSP domain; InterPro: IPR006615 Deubiquitin | 99.88 | |
| PF00443 | 269 | UCH: Ubiquitin carboxyl-terminal hydrolase; InterP | 99.88 | |
| KOG1873 | 877 | consensus Ubiquitin-specific protease [Posttransla | 99.87 | |
| KOG0944 | 763 | consensus Ubiquitin-specific protease UBP14 [Postt | 99.87 | |
| smart00695 | 86 | DUSP Domain in ubiquitin-specific proteases. | 99.85 | |
| cd02662 | 240 | Peptidase_C19F A subfamily of Peptidase C19. Pepti | 99.84 | |
| KOG1872 | 473 | consensus Ubiquitin-specific protease [Posttransla | 99.84 | |
| COG5207 | 749 | UBP14 Isopeptidase T [Posttranslational modificati | 99.81 | |
| KOG1867 | 492 | consensus Ubiquitin-specific protease [Posttransla | 99.78 | |
| cd02673 | 245 | Peptidase_C19Q A subfamily of Peptidase C19. Pepti | 99.67 | |
| cd02674 | 230 | Peptidase_C19R A subfamily of peptidase C19. Pepti | 99.67 | |
| KOG1863 | 1093 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.67 | |
| KOG2026 | 442 | consensus Spindle pole body protein - Sad1p [Cytos | 99.64 | |
| COG5077 | 1089 | Ubiquitin carboxyl-terminal hydrolase [Posttransla | 99.63 | |
| KOG1866 | 944 | consensus Ubiquitin carboxyl-terminal hydrolase [P | 99.61 | |
| KOG1871 | 420 | consensus Ubiquitin-specific protease [Posttransla | 99.55 | |
| PF13423 | 295 | UCH_1: Ubiquitin carboxyl-terminal hydrolase | 99.54 | |
| cd02665 | 228 | Peptidase_C19I A subfamily of Peptidase C19. Pepti | 99.54 | |
| cd02257 | 255 | Peptidase_C19 Peptidase C19 contains ubiquitinyl h | 99.49 | |
| PF14836 | 88 | Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A | 99.29 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 99.18 | |
| cd02672 | 268 | Peptidase_C19P A subfamily of Peptidase C19. Pepti | 99.04 | |
| KOG4598 | 1203 | consensus Putative ubiquitin-specific protease [Po | 98.99 | |
| cd01813 | 74 | UBP_N UBP ubiquitin processing protease. The UBP ( | 97.58 | |
| cd01796 | 71 | DDI1_N DNA damage inducible protein 1 ubiquitin-li | 97.54 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.49 | |
| cd01812 | 71 | BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-ter | 97.37 | |
| cd01807 | 74 | GDX_N ubiquitin-like domain of GDX. GDX contains a | 97.37 | |
| PF14533 | 213 | USP7_C2: Ubiquitin-specific protease C-terminal; P | 97.3 | |
| cd01810 | 74 | ISG15_repeat2 ISG15 ubiquitin-like protein, second | 97.28 | |
| PTZ00044 | 76 | ubiquitin; Provisional | 97.24 | |
| cd01795 | 107 | USP48_C USP ubiquitin-specific protease. The USP ( | 97.21 | |
| cd01800 | 76 | SF3a120_C Ubiquitin-like domain of Mammalian splic | 97.17 | |
| cd01805 | 77 | RAD23_N Ubiquitin-like domain of RAD23. RAD23 belo | 97.16 | |
| cd01806 | 76 | Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also kn | 97.15 | |
| PF00240 | 69 | ubiquitin: Ubiquitin family; InterPro: IPR000626 U | 97.14 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 97.11 | |
| cd01794 | 70 | DC_UbP_C dendritic cell derived ubiquitin-like pro | 97.06 | |
| cd01803 | 76 | Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40 | 97.05 | |
| cd01793 | 74 | Fubi Fubi ubiquitin-like protein. Fubi is a ubiqui | 97.04 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 97.04 | |
| cd01799 | 75 | Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HO | 97.04 | |
| KOG1864 | 587 | consensus Ubiquitin-specific protease [Posttransla | 97.02 | |
| cd01798 | 70 | parkin_N amino-terminal ubiquitin-like of parkin p | 96.99 | |
| cd01809 | 72 | Scythe_N Ubiquitin-like domain of Scythe protein. | 96.95 | |
| cd01797 | 78 | NIRF_N amino-terminal ubiquitin-like domain of Np9 | 96.95 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 96.93 | |
| cd01802 | 103 | AN1_N ubiquitin-like domain of AN1. AN1 (also know | 96.88 | |
| cd01789 | 84 | Alp11_N Ubiquitin-like domain of Alp11 tubulin-fol | 96.79 | |
| cd01808 | 71 | hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC | 96.74 | |
| cd01804 | 78 | midnolin_N Ubiquitin-like domain of midnolin. midn | 96.68 | |
| cd02670 | 241 | Peptidase_C19N A subfamily of Peptidase C19. Pepti | 96.58 | |
| cd01763 | 87 | Sumo Small ubiquitin-related modifier (SUMO). Smal | 96.36 | |
| smart00213 | 64 | UBQ Ubiquitin homologues. Ubiquitin-mediated prote | 96.14 | |
| cd01769 | 69 | UBL Ubiquitin-like domain of UBL. UBLs function by | 96.1 | |
| TIGR00601 | 378 | rad23 UV excision repair protein Rad23. All protei | 95.32 | |
| PF11976 | 72 | Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter | 94.38 | |
| PF11543 | 80 | UN_NPL4: Nuclear pore localisation protein NPL4; I | 94.16 | |
| cd01815 | 75 | BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC | 94.09 | |
| cd01788 | 119 | ElonginB Ubiquitin-like domain of Elongin B. Elong | 92.83 | |
| cd01790 | 79 | Herp_N Homocysteine-responsive endoplasmic reticul | 92.77 | |
| KOG0010 | 493 | consensus Ubiquitin-like protein [Posttranslationa | 92.16 | |
| PLN02560 | 308 | enoyl-CoA reductase | 90.62 | |
| PF14560 | 87 | Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2K | 90.51 | |
| cd01801 | 77 | Tsc13_N Ubiquitin-like domain of Tsc13. Tsc13_N N- | 90.39 | |
| PF00789 | 82 | UBX: UBX domain; InterPro: IPR001012 The UBX domai | 88.63 | |
| cd01791 | 73 | Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also know | 87.92 | |
| smart00166 | 80 | UBX Domain present in ubiquitin-regulatory protein | 87.48 | |
| cd01771 | 80 | Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated fac | 86.98 | |
| KOG4495 | 110 | consensus RNA polymerase II transcription elongati | 86.36 | |
| cd01773 | 82 | Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 i | 85.2 | |
| cd00196 | 69 | UBQ Ubiquitin-like proteins. Ubiquitin homologs; I | 85.01 | |
| cd01774 | 85 | Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 i | 82.99 | |
| KOG0005 | 70 | consensus Ubiquitin-like protein [Cell cycle contr | 82.68 | |
| cd01792 | 80 | ISG15_repeat1 ISG15 ubiquitin-like protein, first | 81.81 |
| >COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-71 Score=578.51 Aligned_cols=495 Identities=33% Similarity=0.555 Sum_probs=404.5
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccccc
Q 007395 20 CTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99 (605)
Q Consensus 20 ~~~~~q~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~PGpIdNs~Ll~ 99 (605)
.+..+|++.|.+ . . ....+.++..|+++..|++...++..- .+..||||+-.+|++
T Consensus 24 Lp~~~q~~li~e-~-~-~e~~k~~~~a~i~~y~wyeg~fd~~~~---------------------dg~~pgPi~q~~i~d 79 (823)
T COG5560 24 LPLMMQEELIDE-K-P-AESSKQCEYAVIFAYAWYEGMFDRASC---------------------DGGSPGPIVQGPIVD 79 (823)
T ss_pred cchHHHHHHHhc-C-c-hhhhccCceEEEEehHHhhhhcccccc---------------------cCCCCCCCCcccccc
Confidence 447788888876 2 1 223455889999999999998887533 245799999999998
Q ss_pred CCCCCCCCCcccccccccCCCcEEEeCHHHHHHHHHHhc-CCCCcceeeeeecCCCceeeeeccceEEEEecCC--C---
Q 007395 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK-GGPALPRKMISEGIVNEKRVEVFXLCLKLIDSRD--N--- 173 (605)
Q Consensus 100 ~~~~~~~~~~~~Lk~~L~e~~Df~iVp~~vW~~L~~wYG-ggp~I~R~vi~~~~~~~~~vElyp~~l~i~~~~~--~--- 173 (605)
- +...|++.+.++.||-+|+..+|++|++||| .|+.++|.++.-.......+|+||+.+++..... +
T Consensus 80 ~-------e~e~lk~sl~e~idysiis~~vw~llvrwyGl~gl~~pr~tvll~ses~p~ve~yp~~f~lh~Lf~ing~~~ 152 (823)
T COG5560 80 F-------EPESLKKSLREGIDYSIISGAVWQLLVRWYGLAGLITPRITVLLPSESAPEVESYPVVFKLHWLFSINGSLI 152 (823)
T ss_pred c-------ChhhcchhhhcCCCeeeechHHHHHHHHHhcccccceeeEEeccccccCCccccccceEEEEEEEeccchhh
Confidence 3 3578999999999999999999999999999 7789999997655545558999999998764332 1
Q ss_pred ----CceEEEeChhchHHHHHHHHHHHhCCCCceeEEEEecCCCccccccCCC-----------------CCChhhhccC
Q 007395 174 ----SQTVIRLSKKASTRQLYEKVCKLRGIEQEKARIWDYFNKQRSTSPLDVS-----------------DQTLDDAMLQ 232 (605)
Q Consensus 174 ----~~~~i~vS~~~tv~~l~~~l~~~~~v~~~~~RLw~~~~~~~~~~~l~~~-----------------~~tl~d~~l~ 232 (605)
....+.+|+..|+.++.+++..+|-.|.++.|||++...+.. ..+.+. ..++.++...
T Consensus 153 n~gh~p~~~s~ss~~tlrdl~e~vmnaf~~psD~FRLw~v~~~~~~-~r~~~~s~f~~~~~~a~~~~~l~~~t~~el~~d 231 (823)
T COG5560 153 NLGHDPVPHSASSHGTLRDLSERVMNAFVDPSDDFRLWDVVPEIMG-LRLGLDSFFRRYRVLASDGRVLHPLTRLELFED 231 (823)
T ss_pred hcCCCcceeeccccchHHHHHHHHHHHhcCcccceeEEEecCCccc-ccccCHHHHhhcchhccchhhhcccHHHHhccc
Confidence 467889999999999999999999999999999998776544 111110 0111121111
Q ss_pred CCCeEEEEEeecCccccccCCCCCccccCCCCCccccccCCCCCCCCCCCCcccccCCCCCCCCCcCCCCCCCCcccccc
Q 007395 233 MDQDILLEVQVDNGISMDSTGNDLALVPIEPSRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAK 312 (605)
Q Consensus 233 ~~~~llle~~~~g~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (605)
.+..++=+...++.|.+.+. . + +..+ + ..
T Consensus 232 ~s~lll~kit~np~wlvdsi-------------------------------------~---------~-~~n~---s-in 260 (823)
T COG5560 232 RSVLLLSKITRNPDWLVDSI-------------------------------------V---------D-DHNR---S-IN 260 (823)
T ss_pred hhhhHHhhhccCCccceeee-------------------------------------c---------c-hhhh---h-HH
Confidence 11111111112333321110 0 0 0001 0 01
Q ss_pred cCCCCCCCccccCCCCcchhHHHHHHhCChhHHHHHH-hcccccccCCCCCCChHHHHHHHHHHHHHHhcCCCcccchHH
Q 007395 313 KGEKGGLAGLQNLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSSGRAAVAPRA 391 (605)
Q Consensus 313 ~~~~~g~~GL~NlGNTCYmNSvLQ~L~~~~~f~~~l~-~~~~~~~~~~~~~~~~~~l~~~l~~L~~~l~~~~~~~v~P~~ 391 (605)
+ .-|.+||+|+||||||||+||||.||++||+||+ ..|..++|..||+|+.|.++.+|+.|+++++.+...+++|..
T Consensus 261 k--e~GtcGL~NlGNTCyMNSaLQCL~ht~eLrdyFlsdeye~~iNe~Nplgmhg~vAsayadLik~ly~~~~haf~Ps~ 338 (823)
T COG5560 261 K--EAGTCGLRNLGNTCYMNSALQCLMHTWELRDYFLSDEYEESINEENPLGMHGSVASAYADLIKQLYDGNLHAFTPSG 338 (823)
T ss_pred h--hccccceecCCcceecchHHHHHhccHHHHHHhhhhhhHhhhcccCccchhhhHHHHHHHHHHHHhCccccccChHH
Confidence 1 1389999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCCCCCccHHHHHHHHHHHHHHHHHhhhcCCcccccCCCCCCh---hhhhhHhhhccccCCCccccccc
Q 007395 392 FKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGGRPD---EEVANECWKNHKARNDSLIVDVF 468 (605)
Q Consensus 392 f~~~l~~~~~~F~~~~QqDA~Efl~~LLd~L~eel~~~~~~~~~e~~~~~~~~~---~~~a~~~w~~~~~~~~s~I~~lF 468 (605)
|+..++.++..|+||.|||+|||+.||||+|||+|||+.+|||.+.+|-....+ ...|+++|..|++||+|+|.++|
T Consensus 339 fK~tIG~fn~~fsGy~QQDSqEFiaflLDgLHEdLnRI~~KpytskPdL~~~d~~~vKk~a~ecW~~H~kRNdSiItdLF 418 (823)
T COG5560 339 FKKTIGSFNEEFSGYDQQDSQEFIAFLLDGLHEDLNRIIKKPYTSKPDLSPGDDVVVKKKAKECWWEHLKRNDSIITDLF 418 (823)
T ss_pred HHHHHhhhHHHhcCccchhHHHHHHHHHHHHHHHHHHhhcCcccCCCCCCCcchHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence 999999999999999999999999999999999999999999999887543333 35689999999999999999999
Q ss_pred ceEEEeEEecCCCCCeeeeeccceeEeecCCCCCceeeEEEEEecCCCCCceeEEEEecCCCcHhHHHHHHHHHcCCCCC
Q 007395 469 QGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTVTRTMTVTVFYANGSGLPMPFTVTLMKHGCCKDLILALSTACCLKID 548 (605)
Q Consensus 469 ~G~~~s~l~C~~C~~~S~~~e~F~~LsL~ip~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 548 (605)
+|.++|++.|+.|+.+|++||||++|+||||....+...+.+++.+|...| ..+.+.+.+++.++++.+.+..|+.+-
T Consensus 419 qgmyKSTL~Cp~C~~vsitfDPfmdlTLPLPvs~vw~htiv~fp~~g~~~p--l~iel~~sSt~~~lk~lv~~~~gk~gc 496 (823)
T COG5560 419 QGMYKSTLTCPGCGSVSITFDPFMDLTLPLPVSMVWKHTIVVFPESGRRQP--LKIELDASSTIRGLKKLVDAEYGKLGC 496 (823)
T ss_pred HHHhhceeeccCcCceeeeecchhhccccCchhhcccccEEEECCCCCCCc--eEEEEeccchHHHHHHHHHHHhccCCc
Confidence 999999999999999999999999999999999999999999999998888 778888899999999999999999877
Q ss_pred CcEEEEEEECCceeEecccCcccc-cCcCCCCeEEEEEecCCCCCceEEEEeeeccc
Q 007395 549 EGLLLAEVYNHQIFRFFENPAELI-SSIKDDEHIVAYRFDRKQGGKIKLEIVNRWQE 604 (605)
Q Consensus 549 ~~~~~~e~~~~~~~~~~~~~~~~~-~~i~~~d~~~~~e~~~~~~~~~~~~~~~~~~~ 604 (605)
-.+.+.++|..++++.+..-+..+ ..|++.|.+|.|| ..++.+.+||+|-+.|
T Consensus 497 ~ei~v~~iy~g~~y~~l~~~dk~ll~~I~~~d~vylYe---~~~ngi~vpvvh~~~~ 550 (823)
T COG5560 497 FEIKVMCIYYGGNYNMLEPADKVLLQDIPQTDFVYLYE---TNDNGIEVPVVHLRIE 550 (823)
T ss_pred cceeEEEEEeccchhhcchhhHHHHhhcCccceEEEee---cCCCCeEEEEEecccc
Confidence 788999999999999998545544 5899999999999 3555699999997655
|
|
| >KOG1870 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02669 Peptidase_C19M A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02663 Peptidase_C19G A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1865 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02658 Peptidase_C19B A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02660 Peptidase_C19D A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02657 Peptidase_C19A A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02671 Peptidase_C19O A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02668 Peptidase_C19L A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1868 consensus Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02661 Peptidase_C19E A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02666 Peptidase_C19J A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02667 Peptidase_C19K A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02664 Peptidase_C19H A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02659 peptidase_C19C A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >PF06337 DUSP: DUSP domain; InterPro: IPR006615 Deubiquitinating enzymes (DUB) form a large family of cysteine protease that can deconjugate ubiquitin or ubiquitin-like proteins (see PDOC00271 from PROSITEDOC) from ubiquitin-conjugated proteins | Back alignment and domain information |
|---|
| >PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
| >KOG1873 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG0944 consensus Ubiquitin-specific protease UBP14 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >smart00695 DUSP Domain in ubiquitin-specific proteases | Back alignment and domain information |
|---|
| >cd02662 Peptidase_C19F A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG1872 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1867 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02673 Peptidase_C19Q A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02674 Peptidase_C19R A subfamily of peptidase C19 | Back alignment and domain information |
|---|
| >KOG1863 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG2026 consensus Spindle pole body protein - Sad1p [Cytoskeleton] | Back alignment and domain information |
|---|
| >COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1866 consensus Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >KOG1871 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase | Back alignment and domain information |
|---|
| >cd02665 Peptidase_C19I A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases | Back alignment and domain information |
|---|
| >PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd02672 Peptidase_C19P A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >KOG4598 consensus Putative ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01813 UBP_N UBP ubiquitin processing protease | Back alignment and domain information |
|---|
| >cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain | Back alignment and domain information |
|---|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >cd01812 BAG1_N Ubiquitin-like domain of BAG1 | Back alignment and domain information |
|---|
| >cd01807 GDX_N ubiquitin-like domain of GDX | Back alignment and domain information |
|---|
| >PF14533 USP7_C2: Ubiquitin-specific protease C-terminal; PDB: 2YLM_A | Back alignment and domain information |
|---|
| >cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2 | Back alignment and domain information |
|---|
| >PTZ00044 ubiquitin; Provisional | Back alignment and domain information |
|---|
| >cd01795 USP48_C USP ubiquitin-specific protease | Back alignment and domain information |
|---|
| >cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120 | Back alignment and domain information |
|---|
| >cd01805 RAD23_N Ubiquitin-like domain of RAD23 | Back alignment and domain information |
|---|
| >cd01806 Nedd8 Nebb8-like ubiquitin protein | Back alignment and domain information |
|---|
| >PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01803 Ubiquitin Ubiquitin | Back alignment and domain information |
|---|
| >cd01793 Fubi Fubi ubiquitin-like protein | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >cd01799 Hoil1_N Ubiquitin-like domain of HOIL1 | Back alignment and domain information |
|---|
| >KOG1864 consensus Ubiquitin-specific protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein | Back alignment and domain information |
|---|
| >cd01809 Scythe_N Ubiquitin-like domain of Scythe protein | Back alignment and domain information |
|---|
| >cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
| >cd01802 AN1_N ubiquitin-like domain of AN1 | Back alignment and domain information |
|---|
| >cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B | Back alignment and domain information |
|---|
| >cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2 | Back alignment and domain information |
|---|
| >cd01804 midnolin_N Ubiquitin-like domain of midnolin | Back alignment and domain information |
|---|
| >cd02670 Peptidase_C19N A subfamily of Peptidase C19 | Back alignment and domain information |
|---|
| >cd01763 Sumo Small ubiquitin-related modifier (SUMO) | Back alignment and domain information |
|---|
| >smart00213 UBQ Ubiquitin homologues | Back alignment and domain information |
|---|
| >cd01769 UBL Ubiquitin-like domain of UBL | Back alignment and domain information |
|---|
| >TIGR00601 rad23 UV excision repair protein Rad23 | Back alignment and domain information |
|---|
| >PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins | Back alignment and domain information |
|---|
| >PF11543 UN_NPL4: Nuclear pore localisation protein NPL4; InterPro: IPR024682 Npl4, along with Ufd1, forms the heterodimer adaptor complex UN, which is involved in the recruitment of p97, an AAA ATPase, for tasks involving the ubiquitin pathway | Back alignment and domain information |
|---|
| >cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP | Back alignment and domain information |
|---|
| >cd01788 ElonginB Ubiquitin-like domain of Elongin B | Back alignment and domain information |
|---|
| >cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein | Back alignment and domain information |
|---|
| >KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only] | Back alignment and domain information |
|---|
| >PLN02560 enoyl-CoA reductase | Back alignment and domain information |
|---|
| >PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A | Back alignment and domain information |
|---|
| >cd01801 Tsc13_N Ubiquitin-like domain of Tsc13 | Back alignment and domain information |
|---|
| >PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast | Back alignment and domain information |
|---|
| >cd01791 Ubl5 UBL5 ubiquitin-like modifier | Back alignment and domain information |
|---|
| >smart00166 UBX Domain present in ubiquitin-regulatory proteins | Back alignment and domain information |
|---|
| >cd01771 Faf1_UBX Faf1 UBX domain | Back alignment and domain information |
|---|
| >KOG4495 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin B [Transcription] | Back alignment and domain information |
|---|
| >cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain | Back alignment and domain information |
|---|
| >cd00196 UBQ Ubiquitin-like proteins | Back alignment and domain information |
|---|
| >cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain | Back alignment and domain information |
|---|
| >KOG0005 consensus Ubiquitin-like protein [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 605 | ||||
| 2y6e_A | 367 | Ubiquitin Specific Protease 4 Is Inhibited By Its U | 4e-70 | ||
| 3n3k_A | 396 | The Catalytic Domain Of Usp8 In Complex With A Usp8 | 3e-45 | ||
| 2gfo_A | 396 | Structure Of The Catalytic Domain Of Human Ubiquiti | 6e-43 | ||
| 2hd5_A | 359 | Usp2 In Complex With Ubiquitin Length = 359 | 3e-35 | ||
| 2ibi_A | 374 | Covalent Ubiquitin-Usp2 Complex Length = 374 | 3e-35 | ||
| 3v6c_A | 367 | Crystal Structure Of Usp2 In Complex With Mutated U | 3e-35 | ||
| 3nhe_A | 348 | High Resolution Structure (1.26a) Of Usp2a In Compl | 4e-34 | ||
| 3i3t_A | 355 | Crystal Structure Of Covalent Ubiquitin-usp21 Compl | 5e-27 | ||
| 2y5b_A | 370 | Structure Of Usp21 In Complex With Linear Diubiquit | 6e-27 | ||
| 3mtn_A | 373 | Usp21 In Complex With A Ubiquitin-based, Usp21-spec | 6e-27 | ||
| 3pv1_A | 225 | Crystal Structure Of The Usp15 Dusp-Ubl Domains Len | 5e-20 | ||
| 3t9l_A | 230 | Structure Of N-Terminal Dusp-Ubl Domains Of Human U | 6e-20 | ||
| 3ppa_A | 237 | Structure Of The Dusp-Ubl Domains Of Usp15 Length = | 9e-20 | ||
| 4a3o_A | 220 | Crystal Structure Of The Usp15 Dusp-Ubl Monomer Len | 9e-20 | ||
| 4a3p_A | 217 | Structure Of Usp15 Dusp-Ubl Deletion Mutant Length | 4e-19 | ||
| 3jyu_A | 231 | Crystal Structure Of The N-Terminal Domains Of The | 2e-16 | ||
| 3lmn_A | 135 | Oligomeric Structure Of The Dusp Domain Of Human Us | 9e-13 | ||
| 1w6v_A | 141 | Solution Structure Of The Dusp Domain Of Husp15 Len | 3e-11 | ||
| 4fip_A | 476 | Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta- | 3e-10 | ||
| 3m99_A | 471 | Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Mod | 1e-09 | ||
| 3mhh_A | 476 | Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE | 1e-09 | ||
| 3ihp_A | 854 | Covalent Ubiquitin-Usp5 Complex Length = 854 | 8e-06 |
| >pdb|2Y6E|A Chain A, Ubiquitin Specific Protease 4 Is Inhibited By Its Ubiquitin- Like Domain Length = 367 | Back alignment and structure |
|
| >pdb|3N3K|A Chain A, The Catalytic Domain Of Usp8 In Complex With A Usp8 Specific Inhibitor Length = 396 | Back alignment and structure |
| >pdb|2GFO|A Chain A, Structure Of The Catalytic Domain Of Human Ubiquitin Carboxyl-terminal Hydrolase 8 Length = 396 | Back alignment and structure |
| >pdb|2HD5|A Chain A, Usp2 In Complex With Ubiquitin Length = 359 | Back alignment and structure |
| >pdb|2IBI|A Chain A, Covalent Ubiquitin-Usp2 Complex Length = 374 | Back alignment and structure |
| >pdb|3V6C|A Chain A, Crystal Structure Of Usp2 In Complex With Mutated Ubiquitin Length = 367 | Back alignment and structure |
| >pdb|3NHE|A Chain A, High Resolution Structure (1.26a) Of Usp2a In Complex With Ubiquitin Length = 348 | Back alignment and structure |
| >pdb|3I3T|A Chain A, Crystal Structure Of Covalent Ubiquitin-usp21 Complex Length = 355 | Back alignment and structure |
| >pdb|2Y5B|A Chain A, Structure Of Usp21 In Complex With Linear Diubiquitin-Aldehyde Length = 370 | Back alignment and structure |
| >pdb|3MTN|A Chain A, Usp21 In Complex With A Ubiquitin-based, Usp21-specific Inhibitor Length = 373 | Back alignment and structure |
| >pdb|3PV1|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Domains Length = 225 | Back alignment and structure |
| >pdb|3T9L|A Chain A, Structure Of N-Terminal Dusp-Ubl Domains Of Human Usp15 Length = 230 | Back alignment and structure |
| >pdb|3PPA|A Chain A, Structure Of The Dusp-Ubl Domains Of Usp15 Length = 237 | Back alignment and structure |
| >pdb|4A3O|A Chain A, Crystal Structure Of The Usp15 Dusp-Ubl Monomer Length = 220 | Back alignment and structure |
| >pdb|4A3P|A Chain A, Structure Of Usp15 Dusp-Ubl Deletion Mutant Length = 217 | Back alignment and structure |
| >pdb|3JYU|A Chain A, Crystal Structure Of The N-Terminal Domains Of The Ubiquitin Specific Peptidase 4 (Usp4) Length = 231 | Back alignment and structure |
| >pdb|3LMN|A Chain A, Oligomeric Structure Of The Dusp Domain Of Human Usp15 Length = 135 | Back alignment and structure |
| >pdb|4FIP|A Chain A, Structure Of The Saga Ubp8(S144n)SGF11(1-72, Delta-Znf)SUS1SGF73 Dub Module Length = 476 | Back alignment and structure |
| >pdb|3M99|A Chain A, Structure Of The Ubp8-Sgf11-Sgf73-Sus1 Saga Dub Module Length = 471 | Back alignment and structure |
| >pdb|3MHH|A Chain A, Structure Of The Saga Ubp8SGF11SUS1SGF73 DUB MODULE Length = 476 | Back alignment and structure |
| >pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A Length = 396 | Back alignment and structure |
|---|
Score = 308 bits (791), Expect = e-100
Identities = 99/247 (40%), Positives = 137/247 (55%), Gaps = 4/247 (1%)
Query: 264 SRSSLTIAGGPALSNGHTTGYRFNQYPGSSFGSTFMDMDDGYDSYNTAKKGEKGGLAGLQ 323
S L G P ++ + YP + + N G L GL+
Sbjct: 10 HSSGLVPRGSPTVTPTVNRENKPTCYPKAEISRLS---ASQIRNLNPVFGGSGPALTGLR 66
Query: 324 NLGNTCFMNSALQCLVHTPDLAQYFL-GDYSDEINTENPLGMHGELALAFGDLLRKLWSS 382
NLGNTC+MNS LQCL + P LA YF Y D+IN N LG GE+A FG +++ LW+
Sbjct: 67 NLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTG 126
Query: 383 GRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDSGG 442
++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ + + +++
Sbjct: 127 QYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDH 186
Query: 443 RPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTLPLPSTV 502
D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FMYL+LPL ST
Sbjct: 187 LDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTS 246
Query: 503 TRTMTVT 509
T+
Sbjct: 247 KCTLQDC 253
|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} Length = 367 | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} PDB: 2hd5_A 2ibi_A Length = 348 | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} PDB: 2y5b_A 3mtn_A Length = 355 | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404 | Back alignment and structure |
|---|
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} Length = 231 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476 | Back alignment and structure |
|---|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A Length = 217 | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854 | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353 | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 Length = 415 | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} Length = 530 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| 3jyu_A | 231 | Ubiquitin carboxyl-terminal hydrolase; domain in u | 100.0 | |
| 4a3p_A | 217 | Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {H | 100.0 | |
| 2y6e_A | 367 | Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; | 100.0 | |
| 2gfo_A | 396 | Ubiquitin carboxyl-terminal hydrolase 8; protease, | 100.0 | |
| 3nhe_A | 348 | Ubiquitin carboxyl-terminal hydrolase 2; cysteine | 100.0 | |
| 3i3t_A | 355 | Ubiquitin carboxyl-terminal hydrolase 21; hydrolas | 100.0 | |
| 2ayn_A | 404 | Ubiquitin carboxyl-terminal hydrolase 14; deubiqui | 99.97 | |
| 1nb8_A | 353 | Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub | 99.96 | |
| 1vjv_A | 415 | Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, | 99.96 | |
| 3mhs_A | 476 | Ubiquitin carboxyl-terminal hydrolase 8; multi-pro | 99.96 | |
| 3ihp_A | 854 | Ubiquitin carboxyl-terminal hydrolase 5; hydrolase | 99.95 | |
| 1w6v_A | 141 | Ubiquitin carboxyl-terminal hydrolase 15; UCH, USP | 99.95 | |
| 2f1z_A | 522 | Ubiquitin carboxyl-terminal hydrolase 7; hausp, US | 99.94 | |
| 2vhf_A | 374 | Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki | 99.6 | |
| 2ylm_A | 530 | Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70 | 99.04 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 97.58 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 97.42 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 97.41 | |
| 2kan_A | 94 | Uncharacterized protein AR3433A; ubiquitin fold, a | 97.4 | |
| 2kj6_A | 97 | Tubulin folding cofactor B; methods development, N | 97.4 | |
| 1wgg_A | 96 | Ubiquitin carboxyl-terminal hydrolase 14; ubiquiti | 97.36 | |
| 2kjr_A | 95 | CG11242; UBL, ubiquitin, ubiquitin-like, structura | 97.36 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 97.35 | |
| 1sif_A | 88 | Ubiquitin; hydrophobic mutants, folding, stability | 97.35 | |
| 4fbj_B | 88 | NEDD8; effector-HOST target complex, glutamine dea | 97.35 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 97.34 | |
| 2kk8_A | 84 | Uncharacterized protein AT4G05270; solution arabid | 97.34 | |
| 3n3k_B | 85 | Ubiquitin; hydrolase, protease, thiol protease, DU | 97.32 | |
| 3a9j_A | 76 | Ubiquitin; protein complex, cytoplasm, isopeptide | 97.29 | |
| 1ndd_A | 76 | NEDD8, protein (ubiquitin-like protein NEDD8); pro | 97.29 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 97.28 | |
| 1wxv_A | 92 | BAG-family molecular chaperone regulator-1; struct | 97.28 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 97.27 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 97.26 | |
| 3shq_A | 320 | UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila | 97.26 | |
| 2hj8_A | 88 | Interferon-induced 17 kDa protein; HR2873B, human | 97.25 | |
| 2kd0_A | 85 | LRR repeats and ubiquitin-like domain-containing p | 97.25 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 97.25 | |
| 2bwf_A | 77 | Ubiquitin-like protein DSK2; signaling protein, UB | 97.22 | |
| 4ajy_B | 118 | Transcription elongation factor B polypeptide 2; E | 97.2 | |
| 1v86_A | 95 | DNA segment, CHR 7, wayne state university 128, ex | 97.18 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 97.18 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 97.18 | |
| 2l7r_A | 93 | Ubiquitin-like protein FUBI; structural genomics, | 97.17 | |
| 1wju_A | 100 | NEDD8 ultimate buster-1; ubiquitin-like domain, st | 97.16 | |
| 1v5t_A | 90 | 8430435I17RIK protein; hypothetical protein, ubiqu | 97.14 | |
| 2fnj_B | 118 | Transcription elongation factor B polypeptide 2; b | 97.13 | |
| 4eew_A | 88 | Large proline-rich protein BAG6; ubiquitin-like fo | 97.11 | |
| 4dwf_A | 90 | HLA-B-associated transcript 3; ubiquitin-like doma | 97.11 | |
| 2faz_A | 78 | Ubiquitin-like containing PHD and ring finger DOM | 97.1 | |
| 1yqb_A | 100 | Ubiquilin 3; structural genomics consortium, ubiqu | 97.08 | |
| 2klc_A | 101 | Ubiquilin-1; ubiquitin-like, structural genomics, | 97.07 | |
| 1wy8_A | 89 | NP95-like ring finger protein, isoform A; ubiquiti | 97.06 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 97.05 | |
| 2wyq_A | 85 | HHR23A, UV excision repair protein RAD23 homolog A | 97.03 | |
| 1yx5_B | 98 | Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo s | 97.03 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 97.02 | |
| 3m62_B | 106 | UV excision repair protein RAD23; armadillo-like r | 97.01 | |
| 2uyz_B | 79 | Small ubiquitin-related modifier 1; sumoylation, c | 97.0 | |
| 3m63_B | 101 | Ubiquitin domain-containing protein DSK2; armadill | 96.99 | |
| 2daf_A | 118 | FLJ35834 protein; hypothetical protein FLJ35834, u | 96.99 | |
| 1wx7_A | 106 | Ubiquilin 3; ubiquitin-like domain, structural gen | 96.99 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 96.97 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 96.96 | |
| 1j8c_A | 125 | Ubiquitin-like protein hplic-2; ubiquitin-like dom | 96.95 | |
| 2kdi_A | 114 | Ubiquitin, vacuolar protein sorting-associated pro | 96.94 | |
| 1we6_A | 111 | Splicing factor, putative; structural genomics, ub | 96.92 | |
| 1v6e_A | 95 | Cytoskeleton-associated protein 1; tubulin-specifi | 96.91 | |
| 1we7_A | 115 | SF3A1 protein; structural genomics, ubiquitin-like | 96.88 | |
| 2dzm_A | 100 | FAS-associated factor 1; ubiquitin-like domain, HF | 96.84 | |
| 1uh6_A | 100 | Ubiquitin-like 5; beta-grAsp fold, structural geno | 96.84 | |
| 1wx8_A | 96 | Riken cDNA 4931431F19; ubiquitin-like domain, ubiq | 96.83 | |
| 2ojr_A | 111 | Ubiquitin; lanthide-binding TAG, terbium, TB, SAD | 96.8 | |
| 1wyw_B | 97 | Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Ho | 96.78 | |
| 2lxa_A | 87 | Ubiquitin-like protein MDY2; ubiquitin-like domain | 96.75 | |
| 1t0y_A | 122 | Tubulin folding cofactor B; ubiquitin-like, cytosk | 96.74 | |
| 4a20_A | 98 | Ubiquitin-like protein MDY2; protein binding, GET- | 96.72 | |
| 1wgd_A | 93 | Homocysteine-responsive endoplasmic reticulum- res | 96.66 | |
| 1ttn_A | 106 | DC-UBP, dendritic cell-derived ubiquitin-like prot | 96.63 | |
| 3l0w_B | 169 | Monoubiquitinated proliferating cell nuclear antig | 96.57 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 96.41 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 96.41 | |
| 3q3f_A | 189 | Ribonuclease/ubiquitin chimeric protein; domain SW | 96.28 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 96.13 | |
| 3rt3_B | 159 | Ubiquitin-like protein ISG15; ubiquitin-like domai | 96.08 | |
| 1x1m_A | 107 | Ubiquitin-like protein SB132; structural genomics, | 96.06 | |
| 3b08_A | 152 | Polyubiquitin-C, ubiquitin; protein complex, signa | 96.01 | |
| 3b1l_X | 76 | E3 ubiquitin-protein ligase parkin; proteasome, AL | 94.97 | |
| 3u5e_m | 128 | 60S ribosomal protein L40; translation, ribosome, | 95.76 | |
| 1v2y_A | 105 | 3300001G02RIK protein; hypothetical protein, ubiqu | 95.72 | |
| 2kzr_A | 86 | Ubiquitin thioesterase OTU1; structural genomics, | 95.72 | |
| 3u30_A | 172 | Ubiquitin, linear DI-ubiquitin; immune system; 2.4 | 95.65 | |
| 1wf9_A | 107 | NPL4 family protein; beta-grAsp fold like domain, | 95.42 | |
| 2kdb_A | 99 | Homocysteine-responsive endoplasmic reticulum- res | 95.33 | |
| 3u5c_f | 152 | 40S ribosomal protein S31; translation, ribosome, | 95.27 | |
| 2io0_B | 91 | Small ubiquitin-related modifier 2 precursor; SUMO | 95.22 | |
| 3ai5_A | 307 | Yeast enhanced green fluorescent protein, ubiquit; | 95.2 | |
| 2io1_B | 94 | Small ubiquitin-related modifier 3 precursor; SUMO | 95.07 | |
| 3a4r_A | 79 | Nfatc2-interacting protein; ubiquitin fold, coiled | 95.05 | |
| 1wia_A | 95 | Hypothetical ubiquitin-like protein (riken cDNA 20 | 94.93 | |
| 2dzj_A | 88 | Synaptic glycoprotein SC2; ubiquitin-like fold, st | 94.88 | |
| 1wm3_A | 72 | Ubiquitin-like protein SMT3B; ubiquitin fold, half | 94.61 | |
| 1wgh_A | 116 | Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fo | 93.98 | |
| 2d07_B | 93 | Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Ho | 93.91 | |
| 1oqy_A | 368 | HHR23A, UV excision repair protein RAD23 homolog A | 93.74 | |
| 2gow_A | 125 | HCG-1 protein, ubiquitin-like protein 3; BC059385, | 93.7 | |
| 2eke_C | 106 | Ubiquitin-like protein SMT3; UBC9, SUMO binding mo | 93.68 | |
| 1wz0_A | 104 | Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-li | 93.15 | |
| 2pjh_A | 80 | Protein NPL4, nuclear protein localization protein | 93.09 | |
| 3kyd_D | 115 | Small ubiquitin-related modifier 1; SUMO, thioeste | 92.94 | |
| 2k8h_A | 110 | Small ubiquitin protein; SUMO, post-translational | 92.51 | |
| 3qx1_A | 84 | FAS-associated factor 1; UBX, protein binding, P97 | 91.77 | |
| 1se9_A | 126 | Ubiquitin family; ubiquitin-like, cell-free, wheat | 91.76 | |
| 2jxx_A | 97 | Nfatc2-interacting protein; nuclear factor of acti | 90.63 | |
| 3goe_A | 82 | DNA repair protein RAD60; SUMO-like domain, sumoyl | 90.09 | |
| 3plu_A | 93 | Ubiquitin-like modifier HUB1; ubiquitin-like, HUB- | 89.48 | |
| 3pge_A | 200 | SUMO-modified proliferating cell nuclear antigen; | 88.85 | |
| 3tix_A | 207 | Ubiquitin-like protein SMT3, RNA-induced transcri | 87.48 | |
| 2dzk_A | 109 | UBX domain-containing protein 2; ubiquitin-like fo | 86.79 | |
| 3v6c_B | 91 | Ubiquitin; structural genomics, structural genomic | 85.72 | |
| 3mtn_B | 85 | UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquit | 85.37 | |
| 4hcn_B | 98 | Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidas | 85.24 | |
| 2dzi_A | 81 | Ubiquitin-like protein 4A; GDX, structural genomic | 84.5 | |
| 2kvr_A | 130 | Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubi | 84.43 | |
| 3k9o_B | 96 | Ubiquitin, UBB+1; E2-25K, complex structure, ATP-b | 83.59 | |
| 4dbg_A | 105 | Ranbp-type and C3HC4-type zinc finger-containing; | 83.41 | |
| 4b6w_A | 86 | Tubulin-specific chaperone; CAP-Gly, ubiquitin-lik | 83.32 | |
| 1wjn_A | 97 | Tubulin-folding protein TBCE; ubiquitin-like domai | 82.19 | |
| 3phx_B | 79 | Ubiquitin-like protein ISG15; OTU domain, DE-ubiqu | 82.13 | |
| 1wj4_A | 124 | KIAA0794 protein; UBX domain, beta-grAsp fold, str | 81.99 | |
| 1v5o_A | 102 | 1700011N24RIK protein; hypothetical protein, ubiqu | 81.92 | |
| 3dbh_I | 88 | NEDD8; cell cycle, activating enzyme, apoptosis, m | 81.33 | |
| 1wh3_A | 87 | 59 kDa 2'-5'-oligoadenylate synthetase like protei | 81.13 | |
| 1uel_A | 95 | HHR23B, UV excision repair protein RAD23 homolog B | 80.48 | |
| 3vdz_A | 111 | Ubiquitin-40S ribosomal protein S27A; gadolinium, | 80.44 |
| >3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-43 Score=348.48 Aligned_cols=218 Identities=30% Similarity=0.540 Sum_probs=188.0
Q ss_pred hhhcCCCCCCCCHHHHHHHHHHHHhhcccCCCCCCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 007395 10 MMENGGSCLPCTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERP 89 (605)
Q Consensus 10 ~~~~~~~~~~~~~~~q~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~P 89 (605)
|-|-|.-...|+.++||++|++|+ +.++++|++|||||++||++|++||+++...... .+....+|
T Consensus 3 ~~~~~~~~~~p~l~~Qr~~i~~l~---~~~l~~Gd~~YlIs~~W~~~w~~~v~~~~~~~~~-----------~~~~~~~p 68 (231)
T 3jyu_A 3 MAEGRGSRERPDVETQKTELGALM---GTTLQRGAQWYLIDSRWFKQWKKYVGFDSWDMYN-----------VGEHNLFP 68 (231)
T ss_dssp ------CCCCCCHHHHHHHHHTTT---TCCCCTTCEEEEEEHHHHHHHHHHHTSSSCCTTT-----------TTCGGGCC
T ss_pred cccCCCCCCCCCHHHHHHHHHHHH---hcCCCCCCEEEEEchHHHHHHHHHhccccccccc-----------ccccCCCC
Confidence 345555567799999999999999 5699999999999999999999999876443111 22335689
Q ss_pred CCCcCcccccCCCCCCCCCcccccccccCCCcEEEeCHHHHHHHHHHhc---CCCCcceeeeeec-CCCceeeeeccceE
Q 007395 90 GPIDNSDIIQNGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMISEG-IVNEKRVEVFXLCL 165 (605)
Q Consensus 90 GpIdNs~Ll~~~~~~~~~~~~~Lk~~L~e~~Df~iVp~~vW~~L~~wYG---ggp~I~R~vi~~~-~~~~~~vElyp~~l 165 (605)
|||||++|++. ..+..||++|.++.||++||+++|++|.+||| |||+|.|.|+..+ ..+...||+||+.|
T Consensus 69 GPIDNs~L~~~------~~~~~Lk~~l~e~~Dy~~vp~~vW~~l~~wYG~~~gg~~I~R~vi~~~~~~~~~~vEvyP~~l 142 (231)
T 3jyu_A 69 GPIDNSGLFSD------PESQTLKEHLIDELDYVLVPAEAWNKLLNWYGCVEGQQPIVRKVVEHGLFVKHCKVEVYLLEL 142 (231)
T ss_dssp CSBCCGGGEEE------TTTTEECSSCCBTTTEEEEEHHHHHHHHHHHCBCTTCCCCEEEEEEECSSSCEEEECCSCEEE
T ss_pred CcEehHHHhCc------CCCcccccccccCCCEEEECHHHHHHHHHHhCCCCCCCceEEEEeccCCCCCcceEEEecceE
Confidence 99999999987 23578999999999999999999999999999 8899999999886 34667999999999
Q ss_pred EEEecCCC-CceEEEeChhchHHHHHHHHHHHhCCCCc-eeEEEEecCCCccccccCCCCCChhhhccCCCCeEEEEEe-
Q 007395 166 KLIDSRDN-SQTVIRLSKKASTRQLYEKVCKLRGIEQE-KARIWDYFNKQRSTSPLDVSDQTLDDAMLQMDQDILLEVQ- 242 (605)
Q Consensus 166 ~i~~~~~~-~~~~i~vS~~~tv~~l~~~l~~~~~v~~~-~~RLw~~~~~~~~~~~l~~~~~tl~d~~l~~~~~llle~~- 242 (605)
+++.++++ ...++.+|+.+|+.+|++++|++|+++.+ ++|||+++..++. .+|.+.+.||++++|.+||.|++|++
T Consensus 143 ~l~~~~~~~~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~-~~L~~~~~tl~d~~L~~~Q~illE~r~ 221 (231)
T 3jyu_A 143 KLCENSDPTNVLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTY-EQLSKLDNTIQDAGLYQGQVLVIEPQN 221 (231)
T ss_dssp EEEETTEEEEEEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSC-EECCCTTSBTTTTTCCTTEEEEEEECC
T ss_pred EEEecCCCCceEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCH-hhhcCCCCCHHHhCCCCCCEEEEEEec
Confidence 99998775 45678899999999999999999999976 7999999988888 88988899999999999999999999
Q ss_pred ecCccc
Q 007395 243 VDNGIS 248 (605)
Q Consensus 243 ~~g~~~ 248 (605)
+||+|+
T Consensus 222 ~dg~WP 227 (231)
T 3jyu_A 222 EDGTWP 227 (231)
T ss_dssp TTSCCC
T ss_pred CCCCCC
Confidence 999995
|
| >4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A | Back alignment and structure |
|---|
| >2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
| >2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A | Back alignment and structure |
|---|
| >3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A | Back alignment and structure |
|---|
| >3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A | Back alignment and structure |
|---|
| >2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A | Back alignment and structure |
|---|
| >1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A | Back alignment and structure |
|---|
| >1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9 | Back alignment and structure |
|---|
| >3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A | Back alignment and structure |
|---|
| >3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens} | Back alignment and structure |
|---|
| >2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ... | Back alignment and structure |
|---|
| >1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana} | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S | Back alignment and structure |
|---|
| >4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A* | Back alignment and structure |
|---|
| >1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A | Back alignment and structure |
|---|
| >2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A | Back alignment and structure |
|---|
| >4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
| >4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A | Back alignment and structure |
|---|
| >2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A | Back alignment and structure |
|---|
| >1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
| >3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B | Back alignment and structure |
|---|
| >3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A | Back alignment and structure |
|---|
| >2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C | Back alignment and structure |
|---|
| >2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A | Back alignment and structure |
|---|
| >1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens} | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A | Back alignment and structure |
|---|
| >1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B | Back alignment and structure |
|---|
| >3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A | Back alignment and structure |
|---|
| >3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p | Back alignment and structure |
|---|
| >1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens} | Back alignment and structure |
|---|
| >1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f | Back alignment and structure |
|---|
| >2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B* | Back alignment and structure |
|---|
| >2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A | Back alignment and structure |
|---|
| >1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B | Back alignment and structure |
|---|
| >1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A | Back alignment and structure |
|---|
| >1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A | Back alignment and structure |
|---|
| >2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus} | Back alignment and structure |
|---|
| >3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei} | Back alignment and structure |
|---|
| >3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A | Back alignment and structure |
|---|
| >1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* | Back alignment and structure |
|---|
| >3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A | Back alignment and structure |
|---|
| >3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A | Back alignment and structure |
|---|
| >3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B | Back alignment and structure |
|---|
| >3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A | Back alignment and structure |
|---|
| >4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A | Back alignment and structure |
|---|
| >4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927} | Back alignment and structure |
|---|
| >1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
| >1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2 | Back alignment and structure |
|---|
| >1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I | Back alignment and structure |
|---|
| >1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1 | Back alignment and structure |
|---|
| >3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 605 | ||||
| d2gfoa1 | 348 | d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h | 5e-46 | |
| d2hd5a1 | 336 | d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy | 1e-40 | |
| d2ayna1 | 383 | d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy | 2e-37 | |
| d1w6va1 | 120 | d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hy | 3e-32 | |
| d1vjva_ | 397 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 2e-22 | |
| d1nbfa_ | 347 | d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase | 1e-20 |
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Cysteine proteinases superfamily: Cysteine proteinases family: Ubiquitin carboxyl-terminal hydrolase, UCH domain: Ubiquitin carboxyl-terminal hydrolase 8 species: Human (Homo sapiens) [TaxId: 9606]
Score = 164 bits (414), Expect = 5e-46
Identities = 91/190 (47%), Positives = 125/190 (65%), Gaps = 1/190 (0%)
Query: 318 GLAGLQNLGNTCFMNSALQCLVHTPDLAQYFLGD-YSDEINTENPLGMHGELALAFGDLL 376
L GL+NLGNTC+MNS LQCL + P LA YF + Y D+IN N LG GE+A FG ++
Sbjct: 14 ALTGLRNLGNTCYMNSILQCLCNAPHLADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIM 73
Query: 377 RKLWSSGRAAVAPRAFKGKLARFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIE 436
+ LW+ ++P+ FK + + QF+GY+Q DSQELL FL+DGLHEDLN+ + +
Sbjct: 74 KALWTGQYRYISPKDFKITIGKINDQFAGYSQQDSQELLLFLMDGLHEDLNKADNRKRYK 133
Query: 437 MKDSGGRPDEEVANECWKNHKARNDSLIVDVFQGQYKSTLVCPVCSKVSITFDPFMYLTL 496
+++ D + A W+ HK N+S+IV +FQGQ+KST+ C C K S TF+ FMYL+L
Sbjct: 134 EENNDHLDDFKAAEHAWQKHKQLNESIIVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSL 193
Query: 497 PLPSTVTRTM 506
PL ST T+
Sbjct: 194 PLASTSKCTL 203
|
| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336 | Back information, alignment and structure |
|---|
| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383 | Back information, alignment and structure |
|---|
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} Length = 120 | Back information, alignment and structure |
|---|
| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397 | Back information, alignment and structure |
|---|
| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 605 | |||
| d1w6va1 | 120 | Ubiquitin carboxyl-terminal hydrolase 15 {Human (H | 99.95 | |
| d2gfoa1 | 348 | Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho | 99.95 | |
| d1nbfa_ | 347 | Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU | 99.94 | |
| d2ayna1 | 383 | Ubiquitin carboxyl-terminal hydrolase 14 {Human (H | 99.93 | |
| d2hd5a1 | 336 | Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum | 99.93 | |
| d1vjva_ | 397 | Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y | 99.86 | |
| d1yqba1 | 84 | Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | 97.7 | |
| d1wxva1 | 81 | Bag-family molecular chaperone regulator-1 {Human | 97.67 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 97.65 | |
| d2bwfa1 | 73 | DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.55 | |
| d1j8ca_ | 103 | Ubiquitin-like N-terminal domain of PLIC-2 {Human | 97.55 | |
| d1zkha1 | 86 | Splicing factor 3 subunit 1, C-terminal domain {Hu | 97.55 | |
| d1v5oa_ | 102 | 1700011n24rik protein {Mouse (Mus musculus) [TaxId | 97.47 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 97.47 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 97.46 | |
| d1v86a_ | 95 | hypothetical D7wsu128e protein {Mouse (Mus musculu | 97.46 | |
| d1z2ma2 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 97.45 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 97.43 | |
| d1bt0a_ | 73 | Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxI | 97.37 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 97.36 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 97.35 | |
| d1wy8a1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 97.3 | |
| d1wh3a_ | 87 | 2'-5'-oligoadenylate synthetase-like protein, OASL | 97.3 | |
| d1wgga_ | 96 | Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (M | 97.27 | |
| d1wx8a1 | 83 | 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090] | 97.25 | |
| d2zeqa1 | 78 | Ubiquitin-like domain of parkin {Mouse (Mus muscul | 97.24 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 97.18 | |
| d1wjua_ | 100 | NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens | 97.16 | |
| d1v5ta_ | 90 | 8430435i17rik protein {Mouse (Mus musculus) [TaxId | 97.12 | |
| d1we6a_ | 111 | Splicing factor 3 subunit 1, C-terminal domain {Th | 97.07 | |
| d1oqya4 | 77 | Ubiquitin-like domain of Rad23 homolog A (Hhr23a) | 97.04 | |
| d1ttna1 | 80 | Dendritic cell-derived ubiquitin-like protein {Hum | 96.98 | |
| d2c9wb1 | 103 | Elongin B {Human (Homo sapiens) [TaxId: 9606]} | 96.96 | |
| d2faza1 | 76 | Ubiquitin-like PHD and RING finger domain-containi | 96.94 | |
| d1uela_ | 95 | Ubiquitin-like domain of Rad23 homolog B (Hhr23B) | 96.73 | |
| d1euvb_ | 79 | SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy | 96.71 | |
| d1wx9a1 | 73 | Large proline-rich protein BAT3 {Human (Homo sapie | 96.62 | |
| d1v2ya_ | 105 | Ubiquitin-like protein 3300001g02rik {Mouse (Mus m | 96.37 | |
| d1wgha_ | 116 | Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculu | 95.85 | |
| d2uyzb1 | 77 | SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax | 95.73 | |
| d1wiaa_ | 95 | Ubiquitin-like protein bab25500 (2010008E23Rik) {M | 95.64 | |
| d1wgda_ | 93 | Homocysteine-responsive endoplasmic reticulum-resi | 94.99 | |
| d1se9a_ | 101 | Hypothetical protein At3g01050 {Thale cress (Arabi | 94.16 | |
| d1x1ma1 | 94 | Ubiquitin-like protein 7 {Mouse (Mus musculus) [Ta | 92.71 | |
| d1wm3a_ | 72 | SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d1h8ca_ | 82 | Fas-associated factor 1, Faf1 {Human (Homo sapiens | 91.85 | |
| d1t0ya_ | 90 | Ubiquitin-like domain of tubulin folding cofactor | 91.52 | |
| d1v6ea_ | 95 | Ubiquitin-like domain of tubulin folding cofactor | 88.3 | |
| d1wf9a1 | 94 | NPL4-like protein 1 {Thale cress (Arabidopsis thal | 87.79 | |
| d1wjna_ | 97 | Tubulin-folding protein TbcE {Mouse (Mus musculus) | 87.24 | |
| d1m94a_ | 73 | Ubiquitin-like modifier protein hub1 {Baker's yeas | 83.97 | |
| d1wj4a_ | 124 | Hypothetical protein KIAA0794 {Human (Homo sapiens | 83.65 | |
| d1i42a_ | 89 | p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.86 | |
| d1ogwa_ | 76 | Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | 81.84 | |
| d1z2ma1 | 76 | Interferon-induced 15 kDa protein {Human (Homo sap | 81.75 | |
| d2cr5a1 | 96 | UBX domain-containing protein 6 (Reproduction 8) { | 81.49 | |
| d1uh6a_ | 100 | Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu | 80.84 |
| >d1w6va1 d.324.1.1 (A:1-120) Ubiquitin carboxyl-terminal hydrolase 15 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a+b) fold: DUSP-like superfamily: DUSP-like family: DUSP, domain in ubiquitin-specific proteases domain: Ubiquitin carboxyl-terminal hydrolase 15 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.3e-28 Score=212.57 Aligned_cols=110 Identities=31% Similarity=0.735 Sum_probs=97.4
Q ss_pred CCHHHHHHHHHHHHhhcccCCCCCCEEEEEchHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCccccc
Q 007395 20 CTPDEERQIVQDLKNQSDLDLKEGNLYFLISTRWYRSWERYVCGDEPSIDNISFDSPHMNGVSSKRAERPGPIDNSDIIQ 99 (605)
Q Consensus 20 ~~~~~q~~~i~~l~~~~~~~~~~g~~~ylIs~~W~~~W~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~PGpIdNs~Ll~ 99 (605)
++.++||++|+.|+ ++++++||+|||||++||++|+.|++++...... .......||||||++|++
T Consensus 7 ~~l~~qr~~i~~l~---~~~~~~Gd~~YlIs~~W~~~w~~yv~~~~~~~~~-----------~~~~~~~pGpIDN~~Ll~ 72 (120)
T d1w6va1 7 ADLDTQRSDIATLL---KTSLRKGDTWYLVDSRWFKQWKKYVGFDSWDKYQ-----------MGDQNVYPGPIDNSGLLK 72 (120)
T ss_dssp CCHHHHHHHHHHHH---SSCCCTTCEEEEEEHHHHHHHHHHHTCSTTCCSS-----------TTCSTTCCCSBCCTTTBC
T ss_pred CCHHHHHHHHHHHH---hcCCCCCCEEEEEcHHHHHHHHHHhccCCccccc-----------ccccCCCCCcEecHHhhc
Confidence 78999999999999 6799999999999999999999999886554211 233467899999999998
Q ss_pred CCCCCCCCCcccccccccCCCcEEEeCHHHHHHHHHHhc---CCCCcceeeee
Q 007395 100 NGNGSSEGDDLEVRRNLEEGQDYVLVPQQVWEKLFCWYK---GGPALPRKMIS 149 (605)
Q Consensus 100 ~~~~~~~~~~~~Lk~~L~e~~Df~iVp~~vW~~L~~wYG---ggp~I~R~vi~ 149 (605)
+ .++..||++|.++.||++||+++|++|.+||| |||+|.|+||.
T Consensus 73 ~------~~~~~Lk~~l~e~~Dy~~Vp~~vW~~L~~wYG~~~GGp~I~R~vi~ 119 (120)
T d1w6va1 73 D------GDAQSLKEHLIDELDYILLPTEGWNKLVSWYTLMEGQEPIARKVVE 119 (120)
T ss_dssp S------SCTTCBCSSCCTTTTEEEECHHHHHHHHHHSCBCTTCCCCEEECCC
T ss_pred C------CCCCcccccccCCCCEEEECHHHHHHHHHHhCCCCCCCceeEeeec
Confidence 6 34678999999999999999999999999999 99999999985
|
| >d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone regulator-1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like protein, OASL {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v5ta_ d.15.1.1 (A:) 8430435i17rik protein {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B (Hhr23B) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500 (2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wgda_ d.15.1.1 (A:) Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 1 protein, HERPUD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1se9a_ d.15.1.1 (A:) Hypothetical protein At3g01050 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1x1ma1 d.15.1.1 (A:8-101) Ubiquitin-like protein 7 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
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| >d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding cofactor B {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1wf9a1 d.15.1.1 (A:8-101) NPL4-like protein 1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
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| >d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
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| >d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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