Citrus Sinensis ID: 007412

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSSKQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRILYLFRLHI
ccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHccccccccccccccccccccEEEEEEccccccccEEEEEEEccccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEccccHHHccccccHHHHHHHccccEEEEcccccccccccccccccccccccHHHHHHHHHccccccccccEEEEEEccEEEccccHHHHccccccccEEEEccccccccccccccccccccccccccccccccccccEEEEHHHHHHHcHHHHHHHHHHHHHcHHHHHcccc
ccHHcccccccHcccccccccHHHHHHHHHHHHHHHHHHHHccEEEcccccccccccccccccccHHHHHHHccccccccHHHHHHHHHcccccccEEHHHEccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccHcHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHcccccHHHccccccEEEEEEcccEEEEEEEEHHHHHcccccccEEEEEEEccccHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHccHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHccEEEEEcccEEEEEccccHHcEcccccEccEHHccHHHHHHHHHHcccccHHHHccccHHHHHHHccccEEcHHHHHHHcHHHHHHHHHHHcccHHHHEHccc
masgrglsgmgihrkrgggsrlPIVLVIFFSVLAPLIFFVGrglytsasidqndipsgsskqnvHWRERLALRYIKSLLSKDVIDVIAAStvdlgplsldSLRKSNMSASWKFVGAEtsvennatsepnqkavriekeapkgkgdniladghsqlvdtPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRkenendnsdSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALgdtaadadlhhsvPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAktipngihcMSMRLTIeyyllppekrkfpgsenlenpnlyhyaLFSDNVLAASVVVNSTimnakdsskhVFHLVTDKLNFGAMNMWfllnppgkaaihvENVDefkwlnssycpvlrQLESASMkeyyfkadhpttlssgasnlkyrnpkylSMLNHLRFYLpqvypklnkilfldddivvqKDLTRLWSVDLQGKVNGAVETCGESFHRFDkylnftnphiarsfdpnacgwaygmnmfdlkewkkkDITGIYHKWQNMVGRILYLFRLHI
masgrglsgmgihrkrgggsRLPIVLVIFFSVLAPLIFFVGRGLYTSAsidqndipsgsskqnvhwRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGaetsvennatsepnqkavRIEKEAPKGKGDniladghsqlvdtpaKQFRRQLRERRRekraadlvqqddeaIVKLEnaaiersksvdsavlgkysiwrkenendnsdstvRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTaadadlhhsvpEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAktipngihCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTImnakdsskhVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADhpttlssgasnlKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRILYLFRLHI
MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSSKQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAkqfrrqlrerrrekrAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRILYLFRLHI
*******************SRLPIVLVIFFSVLAPLIFFVGRGLYTSASID***********NVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSL***********WKF*****************************************************************************************SAVLGKYSIWR*************LMRDQMIMARVYLSIA***************************************IKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPP**********LENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRILYLFRL**
******************GSRLPIVLVIFFSVLAPLIFFVGRGLYT*****************VHWR******************VIAASTVDL***********************************************************************************************************************************RLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLK*************************MGQVLSKAREQLYDCKLVTGKLRAMLQT*********KQSTFLSQLAAKTIPNGIHCMSMRLTIEY********************LYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRILYLFRLHI
********GMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSSKQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAE*************KAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRR**************VQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRILYLFRLHI
******************GSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQ*******S*QNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSN**************************************************************ERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHP*TLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRILYLFRLHI
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSSKQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRILYLFRLHI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query604 2.2.26 [Sep-21-2011]
Q9LE59673 Polygalacturonate 4-alpha yes no 0.958 0.860 0.763 0.0
Q0WQD2680 Probable galacturonosyltr no no 0.850 0.755 0.509 1e-161
Q93ZX7616 Probable galacturonosyltr no no 0.607 0.595 0.628 1e-142
Q9ZPZ1528 Putative galacturonosyltr no no 0.700 0.801 0.553 1e-140
Q9LSG3559 Galacturonosyltransferase no no 0.548 0.592 0.511 9e-98
Q8RXE1610 Probable galacturonosyltr no no 0.567 0.562 0.448 3e-93
Q949Q1537 Probable galacturonosyltr no no 0.610 0.687 0.438 2e-90
Q9M9Y5589 Probable galacturonosyltr no no 0.574 0.589 0.434 2e-89
Q9SKT6536 Probable galacturonosyltr no no 0.614 0.692 0.435 4e-85
Q9FWA4561 Probable galacturonosyltr no no 0.569 0.613 0.482 1e-84
>sp|Q9LE59|GAUT1_ARATH Polygalacturonate 4-alpha-galacturonosyltransferase OS=Arabidopsis thaliana GN=GAUT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  922 bits (2382), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/595 (76%), Positives = 508/595 (85%), Gaps = 16/595 (2%)

Query: 1   MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSS 60
           MA  RGLSG+   R  GGGSR  +VL+IFF V APL FFVGRG+Y  +S   ND    S 
Sbjct: 1   MALKRGLSGVNRIRGSGGGSRSVLVLLIFFCVFAPLCFFVGRGVYIDSS---NDYSIVSV 57

Query: 61  KQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSV 120
           KQN+ WRERLA++ ++SL SK+++DVIA ST DLGPLSLDS +K+N+SASW+  G + S 
Sbjct: 58  KQNLDWRERLAMQSVRSLFSKEILDVIATSTADLGPLSLDSFKKNNLSASWRGTGVDPSF 117

Query: 121 ---ENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRRQLRERRREKRAA 177
              EN AT  P+ K+  + +     K D+I  D   Q V+TP K  RRQLRE+RRE RA 
Sbjct: 118 RHSENPAT--PDVKSNNLNE-----KRDSISKDSIHQKVETPTKIHRRQLREKRREMRAN 170

Query: 178 DLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARV 237
           +LVQ +D+ I+KLENAAIERSKSVDSAVLGKYSIWR+ENENDNSDS +RLMRDQ+IMARV
Sbjct: 171 ELVQHNDDTILKLENAAIERSKSVDSAVLGKYSIWRRENENDNSDSNIRLMRDQVIMARV 230

Query: 238 YLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLY 297
           Y  IAK+KNK DL QELQ+RLK+SQR LG+  +DADL  S  EK++ MGQVL+KA+ QLY
Sbjct: 231 YSGIAKLKNKNDLLQELQARLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLY 290

Query: 298 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEK 357
           DCKLVTGKLRAMLQTADEQVRSLKKQSTFL+QLAAKTIPN IHC+SMRLTI+YYLL PEK
Sbjct: 291 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLAQLAAKTIPNPIHCLSMRLTIDYYLLSPEK 350

Query: 358 RKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNM 417
           RKFP SENLENPNLYHYALFSDNVLAASVVVNSTIMNAKD SKHVFHLVTDKLNFGAMNM
Sbjct: 351 RKFPRSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDPSKHVFHLVTDKLNFGAMNM 410

Query: 418 WFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLK 477
           WFLLNPPGKA IHVENVDEFKWLNSSYCPVLRQLESA+M+EYYFKADHPT   SG+SNLK
Sbjct: 411 WFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMREYYFKADHPT---SGSSNLK 467

Query: 478 YRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCG 537
           YRNPKYLSMLNHLRFYLP+VYPKLNKILFLDDDI+VQKDLT LW V+L GKVNGAVETCG
Sbjct: 468 YRNPKYLSMLNHLRFYLPEVYPKLNKILFLDDDIIVQKDLTPLWEVNLNGKVNGAVETCG 527

Query: 538 ESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNM 592
           ESFHRFDKYLNF+NPHIAR+F+PNACGWAYGMNMFDLKEWKK+DITGIYHKWQNM
Sbjct: 528 ESFHRFDKYLNFSNPHIARNFNPNACGWAYGMNMFDLKEWKKRDITGIYHKWQNM 582
Involved in pectin biosynthesis. Catalyzes the transfer of galacturonic acid from uridine 5'-diphosphogalacturonic acid onto the pectic polysaccharide homogalacturonan.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: 1EC: .EC: 4EC: 3
>sp|Q0WQD2|GAUT3_ARATH Probable galacturonosyltransferase 3 OS=Arabidopsis thaliana GN=GAUT3 PE=2 SV=2 Back     alignment and function description
>sp|Q93ZX7|GAUT4_ARATH Probable galacturonosyltransferase 4 OS=Arabidopsis thaliana GN=GAUT4 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPZ1|GAUT2_ARATH Putative galacturonosyltransferase 2 OS=Arabidopsis thaliana GN=GAUT2 PE=5 SV=1 Back     alignment and function description
>sp|Q9LSG3|GAUT8_ARATH Galacturonosyltransferase 8 OS=Arabidopsis thaliana GN=GAUT8 PE=1 SV=1 Back     alignment and function description
>sp|Q8RXE1|GAUT5_ARATH Probable galacturonosyltransferase 5 OS=Arabidopsis thaliana GN=GAUT5 PE=2 SV=1 Back     alignment and function description
>sp|Q949Q1|GAUTB_ARATH Probable galacturonosyltransferase 11 OS=Arabidopsis thaliana GN=GAUT11 PE=2 SV=1 Back     alignment and function description
>sp|Q9M9Y5|GAUT6_ARATH Probable galacturonosyltransferase 6 OS=Arabidopsis thaliana GN=GAUT6 PE=2 SV=1 Back     alignment and function description
>sp|Q9SKT6|GAUTA_ARATH Probable galacturonosyltransferase 10 OS=Arabidopsis thaliana GN=GAUT10 PE=2 SV=2 Back     alignment and function description
>sp|Q9FWA4|GAUT9_ARATH Probable galacturonosyltransferase 9 OS=Arabidopsis thaliana GN=GAUT9 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
317106631693 JHL05D22.8 [Jatropha curcas] 0.978 0.852 0.824 0.0
296089117681 unnamed protein product [Vitis vinifera] 0.975 0.864 0.811 0.0
224130070687 glycosyltransferase [Populus trichocarpa 0.978 0.860 0.805 0.0
359489396654 PREDICTED: alpha-1,4-galacturonosyltrans 0.930 0.859 0.779 0.0
449454500679 PREDICTED: polygalacturonate 4-alpha-gal 0.970 0.863 0.779 0.0
449530604679 PREDICTED: LOW QUALITY PROTEIN: polygala 0.970 0.863 0.777 0.0
14517362639 AT3g61130/T20K12_30 [Arabidopsis thalian 0.958 0.906 0.763 0.0
15233046673 alpha-1,4-galacturonosyltransferase 1 [A 0.958 0.860 0.763 0.0
297817422673 GAUT1/LGT1 [Arabidopsis lyrata subsp. ly 0.961 0.863 0.757 0.0
255541398 710 transferase, transferring glycosyl group 0.930 0.791 0.750 0.0
>gi|317106631|dbj|BAJ53137.1| JHL05D22.8 [Jatropha curcas] Back     alignment and taxonomy information
 Score = 1013 bits (2618), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 497/603 (82%), Positives = 545/603 (90%), Gaps = 12/603 (1%)

Query: 1   MASGRGLSGMGIHRKRGGG----SRLPIVLVIFFSVLAPLIFFVGRGLYTSASI------ 50
           MA  RG SG+GIHR RGG     SRLPI LVIFFS+LAPLIFFVGRGL+T+ASI      
Sbjct: 1   MALKRGFSGVGIHRNRGGAGGGGSRLPIALVIFFSILAPLIFFVGRGLHTNASIVIITAS 60

Query: 51  -DQNDIPSGSSKQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSA 109
            DQN IP GS+KQ++ WRERLAL+++KSLLSK+VIDVI  ST DLGPLSLD+ RK+N+SA
Sbjct: 61  ADQNSIPVGSNKQDLDWRERLALQHVKSLLSKEVIDVIKESTADLGPLSLDAFRKNNLSA 120

Query: 110 SWKFVGAETSVENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAKQFRRQLRE 169
           SWK VG ET V+N +TSEPN+ A   ++EAPK KGD+   D  SQ  D+PAK  RRQLRE
Sbjct: 121 SWKVVGVETLVKNTSTSEPNKPAAVAKQEAPKSKGDDFSDDH-SQSSDSPAKLLRRQLRE 179

Query: 170 RRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMR 229
           +R EKRAA+LV+QD+E I+KLENAAIERSKSVDSAVLGKYSIWRKENEN+NSDSTVR+MR
Sbjct: 180 KRWEKRAAELVRQDNEVILKLENAAIERSKSVDSAVLGKYSIWRKENENENSDSTVRIMR 239

Query: 230 DQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVL 289
           DQMIMARVY+SIAK+KN  DL QELQ+RLKESQRA+G+  AD+DLHHS PEK+K MGQVL
Sbjct: 240 DQMIMARVYISIAKIKNNLDLHQELQTRLKESQRAVGEATADSDLHHSAPEKMKAMGQVL 299

Query: 290 SKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIE 349
           SKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKT+PNGIHC+SMRLTIE
Sbjct: 300 SKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTVPNGIHCLSMRLTIE 359

Query: 350 YYLLPPEKRKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDK 409
           YYLLPPEKRKFP SENLENPNLYHYALFSDNVLAASVVVNSTI NAKD +KHVFHLVTDK
Sbjct: 360 YYLLPPEKRKFPRSENLENPNLYHYALFSDNVLAASVVVNSTITNAKDPAKHVFHLVTDK 419

Query: 410 LNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTL 469
           LNFGAMNMWFLLNPPGKA IHVENVDEFKWLNSSYCPVLRQLESA+MKEYYFKA+HPT+L
Sbjct: 420 LNFGAMNMWFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMKEYYFKANHPTSL 479

Query: 470 SSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKV 529
           SSG+SNLKYRNPKYLSMLNHLRFYLP+VYPKL+KILFLDDDIVVQKDLT LWSV+L GKV
Sbjct: 480 SSGSSNLKYRNPKYLSMLNHLRFYLPEVYPKLDKILFLDDDIVVQKDLTGLWSVNLGGKV 539

Query: 530 NGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKW 589
           NGAVETCGESFHRFDKYLNFTNPHIAR+FDPNACGWAYGMN+FDLKEWKK+DITGIYHKW
Sbjct: 540 NGAVETCGESFHRFDKYLNFTNPHIARNFDPNACGWAYGMNIFDLKEWKKRDITGIYHKW 599

Query: 590 QNM 592
           Q M
Sbjct: 600 QKM 602

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296089117|emb|CBI38820.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224130070|ref|XP_002320745.1| glycosyltransferase [Populus trichocarpa] gi|222861518|gb|EEE99060.1| glycosyltransferase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359489396|ref|XP_002272447.2| PREDICTED: alpha-1,4-galacturonosyltransferase 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454500|ref|XP_004144992.1| PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like [Cucumis sativus] gi|449473828|ref|XP_004153994.1| PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449530604|ref|XP_004172284.1| PREDICTED: LOW QUALITY PROTEIN: polygalacturonate 4-alpha-galacturonosyltransferase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|14517362|gb|AAK62572.1| AT3g61130/T20K12_30 [Arabidopsis thaliana] gi|23308453|gb|AAN18196.1| At3g61130/T20K12_30 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|15233046|ref|NP_191672.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] gi|75173891|sp|Q9LE59.1|GAUT1_ARATH RecName: Full=Polygalacturonate 4-alpha-galacturonosyltransferase; AltName: Full=Alpha-1,4-galacturonosyltransferase 1; AltName: Full=Galacturonosyltransferase 1; AltName: Full=Like glycosyl transferase 1 gi|6850880|emb|CAB71043.1| putative protein [Arabidopsis thaliana] gi|7799777|emb|CAB91508.1| like glycosyl transferase 1 [Arabidopsis thaliana] gi|86611465|gb|ABD14404.1| homogalacturonan alpha-1,4-galacturonosyltransferase [Arabidopsis thaliana] gi|332646638|gb|AEE80159.1| alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297817422|ref|XP_002876594.1| GAUT1/LGT1 [Arabidopsis lyrata subsp. lyrata] gi|297322432|gb|EFH52853.1| GAUT1/LGT1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255541398|ref|XP_002511763.1| transferase, transferring glycosyl groups, putative [Ricinus communis] gi|223548943|gb|EEF50432.1| transferase, transferring glycosyl groups, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
TAIR|locus:2098836673 GAUT1 "galacturonosyltransfera 0.958 0.860 0.744 1e-233
TAIR|locus:2121753680 GAUT3 "galacturonosyltransfera 0.872 0.775 0.507 2e-145
TAIR|locus:2160957616 GAUT4 "galacturonosyltransfera 0.607 0.595 0.628 8.4e-129
TAIR|locus:2039934528 GAUT2 "galacturonosyltransfera 0.701 0.803 0.527 5.6e-116
TAIR|locus:504955915610 LGT5 "los glycosyltransferase 0.385 0.381 0.457 2.9e-92
TAIR|locus:2090210559 QUA1 "QUASIMODO 1" [Arabidopsi 0.599 0.647 0.485 6.3e-92
TAIR|locus:2074572561 GAUT9 "galacturonosyltransfera 0.569 0.613 0.482 1.2e-90
TAIR|locus:2051426536 GAUT10 "galacturonosyltransfer 0.615 0.694 0.436 5.4e-86
TAIR|locus:2027453537 GAUT11 "galacturonosyltransfer 0.612 0.689 0.437 7.2e-84
TAIR|locus:2102082533 GAUT13 "galacturonosyltransfer 0.516 0.585 0.433 1.8e-69
TAIR|locus:2098836 GAUT1 "galacturonosyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2254 (798.5 bits), Expect = 1.0e-233, P = 1.0e-233
 Identities = 443/595 (74%), Positives = 496/595 (83%)

Query:     1 MASGRGLSGMGIHRKRGGGSRLPIVLVIFFSVLAPLIFFVGRGLYTSASIDQNDIPSGSS 60
             MA  RGLSG+   R  GGGSR  +VL+IFF V APL FFVGRG+Y  +S   ND    S 
Sbjct:     1 MALKRGLSGVNRIRGSGGGSRSVLVLLIFFCVFAPLCFFVGRGVYIDSS---NDYSIVSV 57

Query:    61 KQNVHWRERLALRYIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSV 120
             KQN+ WRERLA++ ++SL SK+++DVIA ST DLGPLSLDS +K+N+SASW+  G + S 
Sbjct:    58 KQNLDWRERLAMQSVRSLFSKEILDVIATSTADLGPLSLDSFKKNNLSASWRGTGVDPSF 117

Query:   121 ---ENNATSEPNQKAVRIEKEAPKGKGDNILADGHSQLVDTPAXXXXXXXXXXXXXXXAA 177
                EN AT  P+ K+  + +     K D+I  D   Q V+TP                A 
Sbjct:   118 RHSENPAT--PDVKSNNLNE-----KRDSISKDSIHQKVETPTKIHRRQLREKRREMRAN 170

Query:   178 DLVQQDDEAIVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARV 237
             +LVQ +D+ I+KLENAAIERSKSVDSAVLGKYSIWR+ENENDNSDS +RLMRDQ+IMARV
Sbjct:   171 ELVQHNDDTILKLENAAIERSKSVDSAVLGKYSIWRRENENDNSDSNIRLMRDQVIMARV 230

Query:   238 YLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLY 297
             Y  IAK+KNK DL QELQ+RLK+SQR LG+  +DADL  S  EK++ MGQVL+KA+ QLY
Sbjct:   231 YSGIAKLKNKNDLLQELQARLKDSQRVLGEATSDADLPRSAHEKLRAMGQVLAKAKMQLY 290

Query:   298 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEK 357
             DCKLVTGKLRAMLQTADEQVRSLKKQSTFL+QLAAKTIPN IHC+SMRLTI+YYLL PEK
Sbjct:   291 DCKLVTGKLRAMLQTADEQVRSLKKQSTFLAQLAAKTIPNPIHCLSMRLTIDYYLLSPEK 350

Query:   358 RKFPGSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNM 417
             RKFP SENLENPNLYHYALFSDNVLAASVVVNSTIMNAKD SKHVFHLVTDKLNFGAMNM
Sbjct:   351 RKFPRSENLENPNLYHYALFSDNVLAASVVVNSTIMNAKDPSKHVFHLVTDKLNFGAMNM 410

Query:   418 WFLLNPPGKAAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLK 477
             WFLLNPPGKA IHVENVDEFKWLNSSYCPVLRQLESA+M+EYYFKADHPT   SG+SNLK
Sbjct:   411 WFLLNPPGKATIHVENVDEFKWLNSSYCPVLRQLESAAMREYYFKADHPT---SGSSNLK 467

Query:   478 YRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCG 537
             YRNPKYLSMLNHLRFYLP+VYPKLNKILFLDDDI+VQKDLT LW V+L GKVNGAVETCG
Sbjct:   468 YRNPKYLSMLNHLRFYLPEVYPKLNKILFLDDDIIVQKDLTPLWEVNLNGKVNGAVETCG 527

Query:   538 ESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNM 592
             ESFHRFDKYLNF+NPHIAR+F+PNACGWAYGMNMFDLKEWKK+DITGIYHKWQNM
Sbjct:   528 ESFHRFDKYLNFSNPHIARNFNPNACGWAYGMNMFDLKEWKKRDITGIYHKWQNM 582
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=IEA;ISS
GO:0010289 "homogalacturonan biosynthetic process" evidence=IDA
GO:0047262 "polygalacturonate 4-alpha-galacturonosyltransferase activity" evidence=IDA
GO:0010075 "regulation of meristem growth" evidence=RCA
GO:0005768 "endosome" evidence=IDA
GO:0005802 "trans-Golgi network" evidence=IDA
TAIR|locus:2121753 GAUT3 "galacturonosyltransferase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2160957 GAUT4 "galacturonosyltransferase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039934 GAUT2 "galacturonosyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955915 LGT5 "los glycosyltransferase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090210 QUA1 "QUASIMODO 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074572 GAUT9 "galacturonosyltransferase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051426 GAUT10 "galacturonosyltransferase 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027453 GAUT11 "galacturonosyltransferase 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2102082 GAUT13 "galacturonosyltransferase 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LE59GAUT1_ARATH2, ., 4, ., 1, ., 4, 30.76300.95860.8603yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GAUT1
GAUT1 (GALACTURONOSYLTRANSFERASE 1); polygalacturonate 4-alpha-galacturonosyltransferase/ transferase, transferring glycosyl groups; Encodes a protein with putative galacturonosyltransferase activity. (673 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
GAE3
GAE3 (UDP-D-GLUCURONATE 4-EPIMERASE 3); UDP-glucuronate 4-epimerase/ catalytic; Encodes a putat [...] (430 aa)
     •• 0.943
GAUT7
GAUT7 (GALACTURONOSYLTRANSFERASE 7); polygalacturonate 4-alpha-galacturonosyltransferase/ trans [...] (619 aa)
   •••••0.940
GAE6
GAE6 (UDP-D-GLUCURONATE 4-EPIMERASE 6); UDP-glucuronate 4-epimerase/ catalytic; UDP-D-glucurona [...] (460 aa)
   • •• 0.936
GAE4
GAE4 (UDP-D-GLUCURONATE 4-EPIMERASE 4); binding / catalytic/ coenzyme binding / racemase and ep [...] (437 aa)
     •• 0.905
AT5G49180
pectinesterase family protein; Encodes a putative pectin methylesterase. The gene is preferenti [...] (571 aa)
     •  0.899
AT5G19730
pectinesterase family protein; pectinesterase family protein; FUNCTIONS IN- pectinesterase acti [...] (383 aa)
     •  0.899
AT5G04970
pectinesterase, putative; pectinesterase, putative; FUNCTIONS IN- enzyme inhibitor activity, pe [...] (624 aa)
     •  0.899
PME44
enzyme inhibitor/ pectinesterase; enzyme inhibitor/ pectinesterase; FUNCTIONS IN- enzyme inhibi [...] (525 aa)
     •  0.899
GAE1
GAE1 (UDP-D-GLUCURONATE 4-EPIMERASE 1); UDP-glucuronate 4-epimerase/ catalytic; UDP-D-glucurona [...] (429 aa)
     •  0.899
GAE5
GAE5 (UDP-D-GLUCURONATE 4-EPIMERASE 5); UDP-glucuronate 4-epimerase/ catalytic; UDP-D-glucurona [...] (436 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
PLN02910657 PLN02910, PLN02910, polygalacturonate 4-alpha-gala 0.0
PLN02829639 PLN02829, PLN02829, Probable galacturonosyltransfe 0.0
PLN02718603 PLN02718, PLN02718, Probable galacturonosyltransfe 1e-148
PLN02742534 PLN02742, PLN02742, Probable galacturonosyltransfe 1e-145
PLN02523559 PLN02523, PLN02523, galacturonosyltransferase 1e-137
PLN02769629 PLN02769, PLN02769, Probable galacturonosyltransfe 1e-105
PLN02870533 PLN02870, PLN02870, Probable galacturonosyltransfe 7e-93
PLN02659534 PLN02659, PLN02659, Probable galacturonosyltransfe 5e-80
cd06429257 cd06429, GT8_like_1, GT8_like_1 represents a subfa 7e-77
PLN02867535 PLN02867, PLN02867, Probable galacturonosyltransfe 3e-73
pfam01501248 pfam01501, Glyco_transf_8, Glycosyl transferase fa 2e-48
cd04194248 cd04194, GT8_A4GalT_like, A4GalT_like proteins cat 3e-13
cd00505246 cd00505, Glyco_transf_8, Members of glycosyltransf 7e-11
COG1442 325 COG1442, RfaJ, Lipopolysaccharide biosynthesis pro 1e-06
>gnl|CDD|215493 PLN02910, PLN02910, polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information 
 Score =  674 bits (1740), Expect = 0.0
 Identities = 295/526 (56%), Positives = 388/526 (73%), Gaps = 24/526 (4%)

Query: 84  IDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQ-KAVRIEKEAPKG 142
           I+++A  +   G + L  ++  ++SASW         EN A    +Q K  +  +++   
Sbjct: 48  INIVATYSDTSGNIRLGRVKMKDLSASWVL-------ENPADKVHDQPKGSQRLEDSSSF 100

Query: 143 KGDNILADGHSQLVD----------------TPAKQFRRQLRERRREKRAADLVQQDDEA 186
           +      D  S                    +P K  R+ LR+ RR+ R A+L+QQD EA
Sbjct: 101 QNGTGEEDNVSHSTTNQTDESGIQFPNKLPASPVKLQRQILRQERRDLRTAELIQQDKEA 160

Query: 187 IVKLENAAIERSKSVDSAVLGKYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKN 246
             + + AAIERSKS+D++V GKYSIWR++ E+ NSDS ++LMRDQ+IMA+ Y +IAK  N
Sbjct: 161 DSQTQAAAIERSKSLDTSVKGKYSIWRRDYESPNSDSILKLMRDQIIMAKAYANIAKSNN 220

Query: 247 KPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQVLSKAREQLYDCKLVTGKL 306
             +L   L  + +E++RA+G+  +DA+LH S  ++ K MG VLS A++QLYDC  +  KL
Sbjct: 221 VTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGHVLSIAKDQLYDCHTMARKL 280

Query: 307 RAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENL 366
           RAMLQ+ + +V +LKK+S FL QLAAKT+P  +HC+ ++L  +Y+LL  + + +   + L
Sbjct: 281 RAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKL 340

Query: 367 ENPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGK 426
           E+P+LYHYA+FSDNVLA SVVVNST+++AK+  KHVFH+VTDKLNF AM MWF++NPP K
Sbjct: 341 EDPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAK 400

Query: 427 AAIHVENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSM 486
           A I VEN+D+FKWLNSSYC VLRQLESA +KEYYFKA+HP++LS+GA NLKYRNPKYLSM
Sbjct: 401 ATIQVENIDDFKWLNSSYCSVLRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSM 460

Query: 487 LNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAVETCGESFHRFDKY 546
           LNHLRFYLP+VYPKL KILFLDDDIVVQKDLT LWS+D+QG VNGAVETC ESFHRFDKY
Sbjct: 461 LNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQGMVNGAVETCKESFHRFDKY 520

Query: 547 LNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNM 592
           LNF+NP I+ +FDPNACGWA+GMNMFDLKEW+K++ITGIYH WQ++
Sbjct: 521 LNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDL 566

Length = 657
>gnl|CDD|215443 PLN02829, PLN02829, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|178320 PLN02718, PLN02718, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215395 PLN02742, PLN02742, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215286 PLN02523, PLN02523, galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215412 PLN02769, PLN02769, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215468 PLN02870, PLN02870, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|215356 PLN02659, PLN02659, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|133051 cd06429, GT8_like_1, GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>gnl|CDD|178458 PLN02867, PLN02867, Probable galacturonosyltransferase Back     alignment and domain information
>gnl|CDD|216536 pfam01501, Glyco_transf_8, Glycosyl transferase family 8 Back     alignment and domain information
>gnl|CDD|133037 cd04194, GT8_A4GalT_like, A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>gnl|CDD|132996 cd00505, Glyco_transf_8, Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>gnl|CDD|224359 COG1442, RfaJ, Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 604
PLN02910657 polygalacturonate 4-alpha-galacturonosyltransferas 100.0
PLN02829639 Probable galacturonosyltransferase 100.0
PLN02769629 Probable galacturonosyltransferase 100.0
PLN02742534 Probable galacturonosyltransferase 100.0
PLN02718603 Probable galacturonosyltransferase 100.0
PLN02870533 Probable galacturonosyltransferase 100.0
PLN02867535 Probable galacturonosyltransferase 100.0
PLN02659534 Probable galacturonosyltransferase 100.0
PLN02523559 galacturonosyltransferase 100.0
cd06429257 GT8_like_1 GT8_like_1 represents a subfamily of GT 100.0
PRK15171 334 lipopolysaccharide 1,3-galactosyltransferase; Prov 99.96
cd00505246 Glyco_transf_8 Members of glycosyltransferase fami 99.95
cd04194248 GT8_A4GalT_like A4GalT_like proteins catalyze the 99.94
COG1442 325 RfaJ Lipopolysaccharide biosynthesis proteins, LPS 99.93
cd06431280 GT8_LARGE_C LARGE catalytic domain has closest hom 99.93
cd06432248 GT8_HUGT1_C_like The C-terminal domain of HUGT1-li 99.92
PF01501250 Glyco_transf_8: Glycosyl transferase family 8; Int 99.92
cd06430304 GT8_like_2 GT8_like_2 represents a subfamily of GT 99.9
cd02537240 GT8_Glycogenin Glycogenin belongs the GT 8 family 99.42
PLN00176 333 galactinol synthase 99.33
cd06914 278 GT8_GNT1 GNT1 is a fungal enzyme that belongs to t 99.02
KOG18791470 consensus UDP-glucose:glycoprotein glucosyltransfe 98.76
COG5597368 Alpha-N-acetylglucosamine transferase [Cell envelo 95.63
>PLN02910 polygalacturonate 4-alpha-galacturonosyltransferase Back     alignment and domain information 
Probab=100.00  E-value=1.6e-147  Score=1201.51  Aligned_cols=538  Identities=55%  Similarity=0.934  Sum_probs=508.3

Q ss_pred             cchhhHHHHHHh--hhhhccchhhHHHhhcccCCCccccccccccCCCCcccEEeccccccccccccCCCc---------
Q 007412           62 QNVHWRERLALR--YIKSLLSKDVIDVIAASTVDLGPLSLDSLRKSNMSASWKFVGAETSVENNATSEPNQ---------  130 (604)
Q Consensus        62 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------  130 (604)
                      ++.+..|..+.+  |++++.++++||+++|||+..|.++|..|++.+||+||++++|..++++++......         
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (657)
T PLN02910         24 QDNNLDEVYASSAAGVGNDPDEKDINIVATYSDTSGNIRLGRVKMKDLSASWVLENPADKVHDQPKGSQRLEDSSSFQNG  103 (657)
T ss_pred             ccccccccccccCcccCCCccccchhhheeeecccccEEEEeeeeccccchhhhcCccccccCcccccccccchhhhccC
Confidence            333444555655  888999999999999999999999999999999999999999999999988443222         


Q ss_pred             --hhhhhhhcCCCCCCCCCccCCCC-cccCChHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhhhccccccccc
Q 007412          131 --KAVRIEKEAPKGKGDNILADGHS-QLVDTPAKQFRRQLRERRREKRAADLVQQDDEAIVKLENAAIERSKSVDSAVLG  207 (604)
Q Consensus       131 --~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  207 (604)
                        ..+.+.++  ++.+.+++|.++| ..+++|+||+||++|++||+.|++||+|||+|++.++|++|||||||||++++|
T Consensus       104 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~d~~~~g  181 (657)
T PLN02910        104 TGEEDNVSHS--TTNQTDESGIQFPNKLPASPVKLQRQILRQERRDLRTAELIQQDKEADSQTQAAAIERSKSLDTSVKG  181 (657)
T ss_pred             cccccchhhh--hhhccccccccCcccCCCCHHHHHHHHHHHHHHHHHHHHHHhccHHHHHhhhHHHhhhhhccCccccc
Confidence              12333333  5788899999999 899999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccCCCCchhHHHHHHhhHHHHHhhhhhhccCCCchHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHHH
Q 007412          208 KYSIWRKENENDNSDSTVRLMRDQMIMARVYLSIAKMKNKPDLQQELQSRLKESQRALGDTAADADLHHSVPEKIKLMGQ  287 (604)
Q Consensus       208 ~y~~w~~~~~~~~~d~~~r~l~dQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~l~~a~~d~~l~~~~~~~~~~m~~  287 (604)
                      ||||||+||++.|+|++||+|||||||||||++|||++||++|+|||+++|||+||+||+|++|+|||+++.++|++|++
T Consensus       182 ~y~~w~~e~~~~~~d~~vk~lkDQl~~AkaY~~iak~~~~~~l~~eL~~~i~e~~r~ls~a~~d~dlp~~~~~k~~~M~~  261 (657)
T PLN02910        182 KYSIWRRDYESPNSDSILKLMRDQIIMAKAYANIAKSNNVTNLYVSLMKQFRENKRAIGEATSDAELHSSALDQAKAMGH  261 (657)
T ss_pred             ceeeecccccccCcHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhccccChHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhccCCCCcccchhhHhhHHHhcCCcccCCCCCCCCCC
Q 007412          288 VLSKAREQLYDCKLVTGKLRAMLQTADEQVRSLKKQSTFLSQLAAKTIPNGIHCMSMRLTIEYYLLPPEKRKFPGSENLE  367 (604)
Q Consensus       288 ~i~~ak~~~~d~~~~~~kLra~l~~~ee~~~~~~~q~~~~~~laa~~~Pk~lHCL~mrLt~ey~~~~~~~~~~p~~~~l~  367 (604)
                      +|++||+++|||+++++|||+||+++||++++||+|++||+||||+|+|||||||+||||+|||++++.++++|++++|+
T Consensus       262 ~l~~ak~~~~d~~~~~~KLraml~~~Ee~~~~~k~qs~~l~qlaa~t~PK~lHCL~mRLt~Ey~~~~~~~~~~p~~~~l~  341 (657)
T PLN02910        262 VLSIAKDQLYDCHTMARKLRAMLQSTERKVDALKKKSAFLIQLAAKTVPKPLHCLPLQLAADYFLLGFQNKDYVNKKKLE  341 (657)
T ss_pred             HHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccccchhhHHHHHhCchhhccCCChhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeEEEEeCCccccccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchh
Q 007412          368 NPNLYHYALFSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPV  447 (604)
Q Consensus       368 dp~liHIal~SDNvLaasVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pv  447 (604)
                      ||+++|||+||||+||+||||||++.|+++|+++|||||||++||+||++||.+||+++|+|||+|+|+|+|++.+|+|+
T Consensus       342 dp~l~Hy~ifSDNVLAaSVVVnSTv~na~~P~k~VFHiVTD~~ny~aM~~WF~~n~~~~A~V~V~nie~f~wln~~~~pv  421 (657)
T PLN02910        342 DPSLYHYAIFSDNVLATSVVVNSTVLHAKEPQKHVFHIVTDKLNFAAMKMWFIINPPAKATIQVENIDDFKWLNSSYCSV  421 (657)
T ss_pred             CCcceeEEEEecceeeEEeehhhhhhcccCccceEEEEecCccccHHHHHHHhhCCCccceEEEeehhhcccccccccHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCC
Q 007412          448 LRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQG  527 (604)
Q Consensus       448 lkqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~g  527 (604)
                      ++|+++..+..|||..++......+..+.++++|+|+|+++|+|||||++||+++||||||+||||++||++||++||+|
T Consensus       422 l~qles~~~~~~yf~~~~~~~~~~~~~~~k~r~p~ylS~lnY~Rf~LPelLp~l~KVLYLD~DVVV~gDLseLw~iDL~g  501 (657)
T PLN02910        422 LRQLESARIKEYYFKANHPSSLSAGADNLKYRNPKYLSMLNHLRFYLPEVYPKLEKILFLDDDIVVQKDLTPLWSIDMQG  501 (657)
T ss_pred             HHHHhhhhhhhhhhhccccccccccccccccCCcchhhHHHHHHHHHHHHhhhcCeEEEEeCCEEecCchHHHHhCCcCC
Confidence            99999999999999876654443445678899999999999999999999999999999999999999999999999999


Q ss_pred             CeEEEEeccCchhhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-CcceEEec
Q 007412          528 KVNGAVETCGESFHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRILYLFR  601 (604)
Q Consensus       528 kviAAVeDc~~~f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~Lw~~~  601 (604)
                      +++|||+||...|+++..+++|++|.+.+.|+++.||||+|||||||++||+++||+.++.|++.| +..||+.+
T Consensus       502 ~v~AAVedc~~~f~r~~~ylnfs~P~i~~yFNs~aCyfNsGVmVIDL~~WRe~nITe~ye~w~eln~~~~L~dqg  576 (657)
T PLN02910        502 MVNGAVETCKESFHRFDKYLNFSNPKISENFDPNACGWAFGMNMFDLKEWRKRNITGIYHYWQDLNEDRTLWKLG  576 (657)
T ss_pred             ceEEEecccchhhhhhhhhhccCChhhhhccCCCCceeecccEEEeHHHHHHhhHHHHHHHHHHhcccccccccC
Confidence            999999999988899999999999999889999999999999999999999999999999999999 99999863

>PLN02829 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02769 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02742 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02718 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02870 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02867 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02659 Probable galacturonosyltransferase Back     alignment and domain information
>PLN02523 galacturonosyltransferase Back     alignment and domain information
>cd06429 GT8_like_1 GT8_like_1 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional Back     alignment and domain information
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis Back     alignment and domain information
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface Back     alignment and domain information
>COG1442 RfaJ Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis Back     alignment and domain information
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family Back     alignment and domain information
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function Back     alignment and domain information
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen Back     alignment and domain information
>PLN00176 galactinol synthase Back     alignment and domain information
>cd06914 GT8_GNT1 GNT1 is a fungal enzyme that belongs to the GT 8 family Back     alignment and domain information
>KOG1879 consensus UDP-glucose:glycoprotein glucosyltransferase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG5597 Alpha-N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
1g9r_A 311 Glycosyl transferase; alpha-beta structure; HET: U 8e-35
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
3tzt_A276 Glycosyl transferase family 8; structural genomics 3e-11
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Length = 311 Back     alignment and structure
 Score =  132 bits (335), Expect = 8e-35
 Identities = 35/228 (15%), Positives = 74/228 (32%), Gaps = 48/228 (21%)

Query: 373 HYALFSDN--VLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIH 430
                +D+       V   S      D+ +  FH++   ++             G   I 
Sbjct: 2   DIVFAADDNYAAYLCVAAKSVEAAHPDT-EIRFHVLDAGISEANRAAVAANLRGGGGNIR 60

Query: 431 VENVDEFKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHL 490
             +V+   +                                        N +++S+  + 
Sbjct: 61  FIDVNPEDFAGFPL-----------------------------------NIRHISITTYA 85

Query: 491 RFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAV-ETCGESFHRFDKYLNF 549
           R  L +     +K+L+LD D++V+  LT LW  DL     GA  +   E    + + +  
Sbjct: 86  RLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGM 145

Query: 550 TNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRIL 597
            +             +  G+ + +LK+W++ DI  +  +W      ++
Sbjct: 146 ADGE---------YYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVM 184
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} Length = 276 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query604
3tzt_A276 Glycosyl transferase family 8; structural genomics 99.96
1g9r_A 311 Glycosyl transferase; alpha-beta structure; HET: U 99.96
1ll2_A 333 Glycogenin-1; protein-substrate complex, beta-alph 99.55
3u2u_A263 Glycogenin-1, GN-1, GN1; structural genomics, stru 99.36
>3tzt_A Glycosyl transferase family 8; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, putative glycosyl transferase; HET: MSE CIT; 2.10A {Anaerococcus prevotii} SCOP: c.68.1.0 Back     alignment and structure
Probab=99.96  E-value=3e-30  Score=260.07  Aligned_cols=177  Identities=15%  Similarity=0.136  Sum_probs=120.1

Q ss_pred             ceeEEEEeC-Ccccc-ccceehhhhccCCCCceEEEEEeCCCchhhh---hhhhhcCCCCCcceeeecccchhhcccccc
Q 007412          371 LYHYALFSD-NVLAA-SVVVNSTIMNAKDSSKHVFHLVTDKLNFGAM---NMWFLLNPPGKAAIHVENVDEFKWLNSSYC  445 (604)
Q Consensus       371 liHIal~SD-NvLaa-sVvInSil~Nsk~P~~ivFHIVTD~in~~am---k~WF~~N~~~~A~VeV~nie~f~wL~~sy~  445 (604)
                      .+|||+++| ||+.+ +|+|+|++.|+++ .+++|||++++++....   +.++.                         
T Consensus         5 ~i~I~~~~d~~Y~~~~~v~i~Sl~~~~~~-~~~~~~il~~~is~~~~~~L~~~~~-------------------------   58 (276)
T 3tzt_A            5 ADALLLTLDENYIPQMKVLMTSIYINNPG-RIFDVYLIHSRISEDKLKDLGEDLK-------------------------   58 (276)
T ss_dssp             CEEEEEECCGGGHHHHHHHHHHHHHHSTT-CCEEEEEEESCCCHHHHHHHHHHHH-------------------------
T ss_pred             eEEEEEEeCHhHHHHHHHHHHHHHHhCCC-CceEEEEEeCCCCHHHHHHHHHHHH-------------------------
Confidence            499999999 78664 5999999999986 57999999999875311   11110                         


Q ss_pred             hhhhhhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcC-CCCeEEEEecceeEecCcHHHHhcC
Q 007412          446 PVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYP-KLNKILFLDDDIVVQKDLTRLWSVD  524 (604)
Q Consensus       446 Pvlkqles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP-~ldKVLYLD~DVIVqgDLseLw~iD  524 (604)
                          . .+..+..+.++.+...         .++...++|..+|+||++|++|| +++||||||+|+||++||++||++|
T Consensus        59 ----~-~~~~i~~~~~~~~~~~---------~~~~~~~~s~~~~~rl~~~~l~p~~~~kvlylD~D~iv~~di~~L~~~d  124 (276)
T 3tzt_A           59 ----K-FSYTLYPIRATDDLFS---------FAKVTDRYPKEMYYRLLAGEFLPENLGEILYLDPDMLVINPLDDLLRTD  124 (276)
T ss_dssp             ----T-TTCEEEEEECC----------------------CHHHHHHHTHHHHSCTTCCEEEEECSSEEECSCSHHHHTCC
T ss_pred             ----H-cCCEEEEEEeCHHHHh---------cCccccccCHHHHHHHHHHHHcccccCeEEEEeCCeeecCCHHHHhhcC
Confidence                0 0112233333321111         12234578999999999999999 5999999999999999999999999


Q ss_pred             CCCCeEEEEeccCch-hhhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-Ccc
Q 007412          525 LQGKVNGAVETCGES-FHRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRI  596 (604)
Q Consensus       525 L~gkviAAVeDc~~~-f~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~  596 (604)
                      ++|+++|||+||... +.++...         .+++...||||||||||||++||+.++++++++|++.+ .+.
T Consensus       125 l~~~~~aav~d~~~~~~~~~~~~---------~~l~~~~~yfNsGV~linl~~~R~~~~~~~~~~~~~~~~~~~  189 (276)
T 3tzt_A          125 ISDYILAAASHTGKTDMANNVNR---------IRLGTDTDYYNSGLLLINLKRAREEIDPDEIFSFVEDNHMNL  189 (276)
T ss_dssp             CTTSSEEEEEC-----------------------------CEEEEEEEEEHHHHHHHCCHHHHHHHHHHC----
T ss_pred             CCCCeEEEEEecccchHHHHHHH---------hcCCCCCCeEEeeEEEEEHHHHHhhhHHHHHHHHHHhccccc
Confidence            999999999999753 1111111         13444469999999999999999999999999999988 554
>1g9r_A Glycosyl transferase; alpha-beta structure; HET: UPF; 2.00A {Neisseria meningitidis} SCOP: c.68.1.4 PDB: 1ga8_A* 1ss9_A* Back     alignment and structure
>1ll2_A Glycogenin-1; protein-substrate complex, beta-alpha-beta rossman-like NUCL binding fold, DXD motif, non-proline CIS peptide bond, TRAN; HET: UPG; 1.90A {Oryctolagus cuniculus} SCOP: c.68.1.14 PDB: 1ll3_A 1ll0_A 1zcv_A 1zcu_A 1zdf_A* 1zcy_A 1zdg_A* Back     alignment and structure
>3u2u_A Glycogenin-1, GN-1, GN1; structural genomics, structural genomics consortium, SGC, transferase, glycosyltransferase, glycogen biosynthesis; HET: GLC UDP; 1.45A {Homo sapiens} SCOP: c.68.1.14 PDB: 3t7n_A* 3t7o_A* 3t7m_A* 3u2v_A* 3u2x_A* 3u2t_A 3rmv_A* 3rmw_A* 3u2w_A* 3qvb_A* 3q4s_A* 1zct_A* 3v8y_A 3v8z_A* 3usr_A 3v90_A 3v91_A* 3usq_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 604
d1ga8a_282 c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseri 2e-14
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Length = 282 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

 Score = 71.5 bits (174), Expect = 2e-14
 Identities = 37/229 (16%), Positives = 76/229 (33%), Gaps = 45/229 (19%)

Query: 377 FSDNVLAASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDE 436
             DN  A   V   ++  A   ++  FH++   ++             G   I   +V+ 
Sbjct: 7   ADDNYAAYLCVAAKSVEAAHPDTEIRFHVLDAGISEANRAAVAANLRGGGGNIRFIDVNP 66

Query: 437 FKWLNSSYCPVLRQLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQ 496
             +                                        N +++S+  + R  L +
Sbjct: 67  EDFAG-----------------------------------FPLNIRHISITTYARLKLGE 91

Query: 497 VYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKVNGAV-ETCGESFHRFDKYLNFTNPHIA 555
                +K+L+LD D++V+  LT LW  DL     GA  +   E    + + +   +    
Sbjct: 92  YIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNWLGASIDLFVERQEGYKQKIGMADGE-- 149

Query: 556 RSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMVGRILYLFRLHI 604
                    +  G+ + +LK+W++ DI  +  +W      ++      I
Sbjct: 150 -------YYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVMQYQDQDI 191

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query604
d1ga8a_282 Galactosyltransferase LgtC {Neisseria meningitidis 99.96
d1ll2a_263 Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 99.63
>d1ga8a_ c.68.1.4 (A:) Galactosyltransferase LgtC {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Nucleotide-diphospho-sugar transferases
superfamily: Nucleotide-diphospho-sugar transferases
family: Galactosyltransferase LgtC
domain: Galactosyltransferase LgtC
species: Neisseria meningitidis [TaxId: 487]

Probab=99.96  E-value=3.6e-29  Score=246.15  Aligned_cols=180  Identities=19%  Similarity=0.255  Sum_probs=133.2

Q ss_pred             eeEEEEeC-Cccc-cccceehhhhccCCCCceEEEEEeCCCchhhhhhhhhcCCCCCcceeeecccchhhcccccchhhh
Q 007412          372 YHYALFSD-NVLA-ASVVVNSTIMNAKDSSKHVFHLVTDKLNFGAMNMWFLLNPPGKAAIHVENVDEFKWLNSSYCPVLR  449 (604)
Q Consensus       372 iHIal~SD-NvLa-asVvInSil~Nsk~P~~ivFHIVTD~in~~amk~WF~~N~~~~A~VeV~nie~f~wL~~sy~Pvlk  449 (604)
                      ||||+++| ||+. ++|+|+|++.|+++ .+++|||++++++....+.....                  + .       
T Consensus         1 mnIv~~~D~nY~~~~~~~i~SL~~~~~~-~~~~~~il~~~~~~~~~~~l~~~------------------~-~-------   53 (282)
T d1ga8a_           1 MDIVFAADDNYAAYLCVAAKSVEAAHPD-TEIRFHVLDAGISEANRAAVAAN------------------L-R-------   53 (282)
T ss_dssp             CEEEEEECGGGHHHHHHHHHHHHHHCTT-SCCEEEEEESSCCHHHHHHHHHT------------------S-G-------
T ss_pred             CEEEEECCHHHHHHHHHHHHHHHHHCcC-CCEEEEEEcCCCCHHHHHHHHHH------------------H-H-------
Confidence            69999999 7865 45999999998886 57999999999885321111100                  0 0       


Q ss_pred             hhccCCcEEEEecCCCCCccccCcccccCCCCCCcchhhhHHhhhhhhcCCCCeEEEEecceeEecCcHHHHhcCCCCCe
Q 007412          450 QLESASMKEYYFKADHPTTLSSGASNLKYRNPKYLSMLNHLRFYLPQVYPKLNKILFLDDDIVVQKDLTRLWSVDLQGKV  529 (604)
Q Consensus       450 qles~~~~~y~F~~~~~~~l~~~~~~~~~rnp~yiS~~~y~Rf~LPeLLP~ldKVLYLD~DVIVqgDLseLw~iDL~gkv  529 (604)
                       .....+..+.++...        ........+++|.++|+||++|++||+++||||||+|+||.+||++||++|+++++
T Consensus        54 -~~~~~i~~~~~~~~~--------~~~~~~~~~~~s~~~y~Rl~l~~~lp~~~kiiyLD~D~iv~~dl~~L~~~~~~~~~  124 (282)
T d1ga8a_          54 -GGGGNIRFIDVNPED--------FAGFPLNIRHISITTYARLKLGEYIADCDKVLYLDIDVLVRDSLTPLWDTDLGDNW  124 (282)
T ss_dssp             -GGTTTEEEEECCGGG--------GTTSCCCCTTCCGGGGGGGGHHHHCCSCSCEEEECSSEEECSCCHHHHTCCCTTCS
T ss_pred             -HcCCeEEEEECCchH--------hccccccccccCHHHHHHHHHhhhCCccceEEEecCCEEEecchHHHHhcccccce
Confidence             001223333332111        11011134688999999999999999999999999999999999999999999999


Q ss_pred             EEEEeccCchh-hhhccccccCCccccccCCCCCCccccceeeeehHHHHhhChHHHHHHHHHHc-Ccc
Q 007412          530 NGAVETCGESF-HRFDKYLNFTNPHIARSFDPNACGWAYGMNMFDLKEWKKKDITGIYHKWQNMV-GRI  596 (604)
Q Consensus       530 iAAVeDc~~~f-~r~~~yLnfS~P~I~~~fd~~~cYFNSGVLLiDL~kWRe~nIt~k~~~wle~n-dr~  596 (604)
                      +|||.|+.... ..+...+         ++.+..+||||||||||+++||+.++++++++|++.+ ...
T Consensus       125 ~aa~~d~~~~~~~~~~~~~---------~~~~~~~yfNsGVml~n~~~~r~~~~~~~~~~~~~~~~~~~  184 (282)
T d1ga8a_         125 LGASIDLFVERQEGYKQKI---------GMADGEYYFNAGVLLINLKKWRRHDIFKMSSEWVEQYKDVM  184 (282)
T ss_dssp             EEEEECHHHHTSTTHHHHT---------TCCTTSCCEEEEEEEECHHHHTTSCHHHHHHHHHHHHTTTC
T ss_pred             eeeehhhhhhhhhhhHHHh---------CCCCCCceeecceeeechhhhhhhhHHHHHHHHHHhcccCc
Confidence            99999985321 1111111         4556689999999999999999999999999999988 543
>d1ll2a_ c.68.1.14 (A:) Glycogenin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure