Citrus Sinensis ID: 007413

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
Protein Sequence
MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHcccccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHcccccccccHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccEEcccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccHHHHHHHcHHcccccccccccccccccccccccccccEEHHHHHHHcccccHHHHHHHcccccEccccc
Coil and Loop (DISEMBL)
maknsetsameiddkksinsdqigpkFSINVLQLLKSAQmqhglrhgdytrYRRYCTARLRRLYKSLKfthgrgkytrkaiTESTVTEVRFLHLVLYTAERAWSHAmekrqlpdgpnaRQRIYLIGRLRKAVKWATLFSNLcaikadprtsLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELgkygdvenQVLCRERVEELEPSIRYCLHkigesnvktsellqigemegpaldLFKSKLEAVMAEARSQQAASLTEFhwlghrfpisnaKTRVAILKAQELEKDLHVKaadslpaekKLVIFDKIFTAYHEARGCIrsdlasagnaenvkdDLFGLDKAVSAVLGQRTIERNQLLVSIVKgkltkqrddktgkvtkpeELVRLYDLLLQNTADLSDLvssgrerkpeevKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKEcrsnsciehakgiMVEEKASenlsnkistvsisgtgkksFQVDKFLLEKLDVYesavgdsnvkgaarieafppafqsiarnpivldlaynfidfpslenrmKKDRKGFISRLWR
Flexible Loop (DISEMBL)
maknsetsameiddkksinsdqigPKFSINVLQLLKSAQmqhglrhgdytryRRYCTARLRRLYkslkfthgrgkytrkaitestvteVRFLHLVLYTAERAWSHAmekrqlpdgpnaRQRIYLIGRLRKAVKWATLFSNLcaikadprTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELgkygdvenqVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHvkaadslpaekkLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVlgqrtiernqllvsivkgkltkqrddktgkvtkpeelVRLYDLLLQNTADLSDLvssgrerkpeevkfaeecelkslaFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKIstvsisgtgkksFQVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFidfpslenrmkkdrkgfisrlwr
Low Complexity Region (SEG)
MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDytryrryctarlrrlyKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR
Disordered region (IsUnstruct)
*************************KFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAM**********ARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMA******AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKL***************ELVRLYDLLLQNTADL****************FAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDF********MMIEELKTLCKECRSNSCIEHAKGIMV********************GKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSL*****************
Disordered Region (DISOPRED)
***************************SINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLY***************AITESTVTEVRFLHLVLYTAERAWSH*******************IGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCL*************************************************HWLGHRFPISNAKTRVAILKAQELE*****************VIFDKIFTAYHEARGC******************FGLDKAVSAVLGQRTIERNQLLVSI*********************LVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHA**********************TLCKECRSNSCIEHAKGIMVEEKA***************************LEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFI***************FISRLWR
Disordered Region (DISEMBL)
***********IDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVM********ASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR
Disordered Region (DISPRO)
***********************GPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQ**DKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKIS*V************DKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	604	2.2.26 [Sep-21-2011]
Q00004	622	Signal recognition partic	yes	no	0.908	0.882	0.338	8e-84
Q9UHB9	627	Signal recognition partic	yes	no	0.913	0.880	0.336	6e-83
Q8BMA6	625	Signal recognition partic	yes	no	0.902	0.872	0.339	4e-82
Q9VSS2	604	Signal recognition partic	yes	no	0.887	0.887	0.316	2e-67
Q20822	622	Probable signal recogniti	yes	no	0.900	0.874	0.278	3e-50
Q1ZXE8	614	Signal recognition partic	yes	no	0.937	0.921	0.251	3e-42
O74436	597	Signal recognition partic	yes	no	0.307	0.311	0.261	0.0003

>sp|Q00004|SRP68_CANFA Signal recognition particle 68 kDa protein OS=Canis familiaris GN=SRP68 PE=1 SV=1

 Score =  311 bits (798), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 204/602 (33%), Positives = 323/602 (53%), Gaps = 53/602 (8%)

Query: 22  QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
           + G   S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F  G R K+T K 
Sbjct: 50  EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 109

Query: 81  ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
           +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct: 110 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 168

Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
           LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct: 169 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 227

Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
           VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct: 228 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 286

Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
           AA+++E  W G   P+   K R+ +L   + E  +    A +   E K  +F+ + +   
Sbjct: 287 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI----AQAESEETKERLFESMLSECR 342

Query: 320 EARGCIRSDL------------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSI 367
           +A   +R +L              +G   N++     L   ++ +     I RN+ +   
Sbjct: 343 DAIQAVREELKPDQKQRDYTLDGESGKVSNLQ----YLHSYLTYIKLSTAIRRNENMAKG 398

Query: 368 VKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELK 427
           ++  L +Q +D++ +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK
Sbjct: 399 LQKALQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLK 453

Query: 428 SLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTL 487
           +L F+A RCF++A+SY L  K +EA  LY R   +A     D     NS + +  +++ L
Sbjct: 454 TLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNSLKDL-PDVQEL 512

Query: 488 CKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQV--DKFLLEKLDVYES 545
             + RS  C   A  I+                S S   + S QV  +K L+E+ + +  
Sbjct: 513 ITQVRSEKCSLQAAAIL--------------DASDSHQPETSSQVKDNKPLVERFETF-- 556

Query: 546 AVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK----GFISR 601
            +  S V   A +  FPP FQ I   P+  DLA N + FP LE+++++  K    G+I  
Sbjct: 557 CLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKSGLTGYIKG 616

Query: 602 LW 603
           ++
Sbjct: 617 IF 618

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.
Canis familiaris (taxid: 9615)

>sp|Q9UHB9|SRP68_HUMAN Signal recognition particle 68 kDa protein OS=Homo sapiens GN=SRP68 PE=1 SV=2

 Score =  308 bits (790), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 202/601 (33%), Positives = 322/601 (53%), Gaps = 49/601 (8%)

Query: 22  QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
           + G   S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F  G R K+T K 
Sbjct: 53  EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 112

Query: 81  ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
           +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct: 113 VTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 171

Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
           LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct: 172 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 230

Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
           VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct: 231 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 289

Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
           AA+++E  W G   P+   K R+ +L   + E  + V+A      E K  +F+ + +   
Sbjct: 290 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECR 345

Query: 320 EARGCIRSDL------------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLV-S 366
           +A   +R +L               G   N++     L   ++ +     I+RN+ +   
Sbjct: 346 DAIQVVREELKPDQKQRDYILEGEPGKVSNLQ----YLHSYLTYIKLSTAIKRNENMAKG 401

Query: 367 IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECEL 426
           + +  L +Q +D + +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  L
Sbjct: 402 LQRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDKAFQKEIGL 456

Query: 427 KSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKT 486
           K+L F+A RCF++A+SY L  K +EA  LY R   +A     D     NS + +  +++ 
Sbjct: 457 KTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNSLKDL-PDVQE 515

Query: 487 LCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESA 546
           L  + RS  C   A  I+    A +           + T     + +K L+E+ + +   
Sbjct: 516 LITQVRSEKCSLQAAAILDANDAHQ-----------TETSSSQVKDNKPLVERFETF--C 562

Query: 547 VGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK----GFISRL 602
           +  S V   A +  FPP FQ I   P+  DLA N + FP LE+++++  K    G+I  +
Sbjct: 563 LDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKSGLTGYIKGI 622

Query: 603 W 603
           +
Sbjct: 623 F 623

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Homo sapiens (taxid: 9606)

>sp|Q8BMA6|SRP68_MOUSE Signal recognition particle 68 kDa protein OS=Mus musculus GN=Srp68 PE=2 SV=2

 Score =  306 bits (783), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 206/607 (33%), Positives = 328/607 (54%), Gaps = 62/607 (10%)

Query: 22  QIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKA 80
           + G   S+ +LQ++K +Q QHGLRHGD+ RYR YC+ R RRL K+L F  G R K+T K 
Sbjct: 52  EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 111

Query: 81  ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
           +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct: 112 VTEELLTDNRYLLLVLMDAERAWSYAMQLKQEANT-EPRKRFHLLSRLRKAVKHAEELER 170

Query: 141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
           LC + + D +T LEA+AY +Y+ G L FE  Q W++A++ F   + +YE+L      E  
Sbjct: 171 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKSAIEAFNKCKTIYEKLASAFTEEQA 229

Query: 200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
           VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct: 230 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 288

Query: 260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
           AA+++E  W G   P+   K R+ +L   + E  + V+A      E K  +F+ + +   
Sbjct: 289 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECR 344

Query: 320 EARGCIRSDLAS-------AGNAENVK-DDLFGLDKAVSAVLGQRTIERNQLLV-SIVKG 370
           +A   +R +L         A + E+ K  +L  L   ++ +     I RN+ +   + + 
Sbjct: 345 DALQAVREELKPDQKQRDYALDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLHRA 404

Query: 371 KLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLA 430
            L +Q +D + +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L 
Sbjct: 405 LLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRTFQKEISLKTLV 459

Query: 431 FRAERCFYLARSYSLAGKRTEAYALYCRARSHA----------ENALKDFQRMANSDQMM 480
           F+A RCF++A+SY L  K +EA  LY R   +A          +N+LKD           
Sbjct: 460 FKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVSSHGGASKNSLKD----------- 508

Query: 481 IEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKL 540
           + +++ L  + RS  C   A  I+       N S++  T S         + +  L+E+ 
Sbjct: 509 LPDVQELITQVRSEKCSLQAAAIL-----DANDSHQTDTSS-------QVKDNTPLVERF 556

Query: 541 DVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK---- 596
           + +   +  S V   A +  FPP FQ I   P+  DLA N + FP LE+++++  K    
Sbjct: 557 ESF--CLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTKSGLT 614

Query: 597 GFISRLW 603
           G+I  ++
Sbjct: 615 GYIKGIF 621

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Mus musculus (taxid: 10090)

>sp|Q9VSS2|SRP68_DROME Signal recognition particle 68 kDa protein OS=Drosophila melanogaster GN=Srp68 PE=2 SV=1

 Score =  257 bits (657), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 190/601 (31%), Positives = 309/601 (51%), Gaps = 65/601 (10%)

Query: 27  FSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKAITEST 85
           F++ +L ++K AQ QHGLRHGD+ RYR YC+ R+RRL K+LK+  G +  + R+ +T   
Sbjct: 29  FTVEILHMIKDAQQQHGLRHGDFQRYRGYCSRRIRRLRKALKYPQGDKRHFKRRDVTIGQ 88

Query: 86  VT----EVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNL 141
           +T    + RF+H+ L  AERAW++AM+ +Q       R+R +L+ +LR+A  +A     L
Sbjct: 89  LTGKKADERFIHIPLICAERAWAYAMQLKQ-ESNTEPRKRFHLVNKLRRACFYALQLQEL 147

Query: 142 CAIKA-DPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQV 200
           C  +A D RT LE EAY ++M G L FE  Q W+TA ++ K A+ VYE LGK    + Q 
Sbjct: 148 CNTEAFDARTKLECEAYVAWMHGTLHFEL-QLWKTAGEHLKRAQVVYENLGKALPEDEQE 206

Query: 201 LCRERVEELEPSIRYCLHKI--GESNVKTSELLQI---GEMEGPALDLFKSKLEAVMAEA 255
           L R +V E  P++RYC + I  G S  K  E+L++   G +E          L+ ++++ 
Sbjct: 207 LYRAKVNEFTPNLRYCAYNISGGASGGKIDEILELRAQGVLEN---------LDVLVSQT 257

Query: 256 RSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIF 315
           +++ +  L    W G +  +   K R+ +L AQEL+K L    A +   + K+ + ++I 
Sbjct: 258 KTESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSL----AKTTKQDAKIELIERIL 313

Query: 316 TAYHEARGCIRSD------LASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVK 369
               +A   +R +      L S    + V    + L   +S +   RT++RN  LV   K
Sbjct: 314 MDCKDAIQAVRDEIKQDPKLRSLTTGQTVSGVQYLL-AYLSYIRHSRTLQRNLCLVEQAK 372

Query: 370 -----GKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEEC 424
                  L  Q++   GK  +P++L RLY+++LQN  ++  +  +G E   ++  +  E 
Sbjct: 373 LNFYDPNLQSQQNVGDGKRVRPQDLARLYEIILQNVTEMQQI--NGLE---DDATYQSEV 427

Query: 425 ELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEEL 484
           E  ++ F+A RC+Y+A +     K  EA ALY RA ++A  ALK     ++ +  + EEL
Sbjct: 428 ENLAITFKAFRCYYIALTLIDIKKWKEAVALYERASNYATEALKG---KSSPEFQLQEEL 484

Query: 485 KTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYE 544
           K +           HA  ++ ++ + E           SGT  KS +  K L E+L +Y+
Sbjct: 485 KKVVSAIDGCKFSAHAYSVLEDDNSEE-----------SGTTTKSQKTTKPLYERLSLYK 533

Query: 545 SAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK------GF 598
                S    A  +    P  + I   PI  DLA  +++ PSLE +++   K      GF
Sbjct: 534 E--DQSLHTKAPNVFKLTPDMEPIPCKPIFFDLAMTYVELPSLEGKLESPGKKGASITGF 591

Query: 599 I 599
           +
Sbjct: 592 V 592

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp68 binds the 7S RNA, Srp72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Drosophila melanogaster (taxid: 7227)

>sp|Q20822|SRP68_CAEEL Probable signal recognition particle 68 kDa protein OS=Caenorhabditis elegans GN=F55C5.8 PE=3 SV=2

 Score =  200 bits (508), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 166/597 (27%), Positives = 304/597 (50%), Gaps = 53/597 (8%)

Query: 20  SDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRG----- 74
           ++++ P  ++++LQ++K AQ QHGLRHGDY RYR+YC A+L R+ K+LKFT+        
Sbjct: 11  TEELPPFPTVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKFTNSHNCQKKR 70

Query: 75  --KYTRKAITESTVTEVRFLHLVLYTAERAWSHAM-EKRQLPDGP-NARQRIYLIGRLRK 130
             K+ +K ++  +V  V+FL+  ++ +ER ++ AM +K  L D P  +R++  +I  LRK
Sbjct: 71  KAKFVKKWLSVESVQNVQFLNFGIFESERRYAEAMIDKITLEDNPEKSRKKFSMINSLRK 130

Query: 131 AVKWATLFSNLC--AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188
           AV  AT    +   + + D  T LEA+AYA++M+G   FE  +NW+ A ++ K A+ VYE
Sbjct: 131 AVLHATNLEKIVQESERFDAPTKLEAQAYAAWMRGMCSFE-SRNWQKASESLKLAKTVYE 189

Query: 189 ELGK-YGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSK 247
           +L +   +     + + R  E++P +R C   I ES      + ++ E+     +   S 
Sbjct: 190 KLAEATNNTTLSSIFKGRCREIQPQLRLCEFNIAESPGAVGTMTELMELRMQMGEGGDSS 249

Query: 248 LEAVMAEAR-SQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEK 306
           ++ +++E R S  +A +    W G +  + + K +  + + ++ E    V+ A     ++
Sbjct: 250 VDKLISEMRASATSAEVVTIEWGGAKSTVDDEKAKQVVQEWKQTE----VELAQCQTPKE 305

Query: 307 KLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVS 366
           K+ +F+K      +A   I SD+    ++EN    +    KA    L         L + 
Sbjct: 306 KMALFEKATADTRDAIDRI-SDIIRRKSSENADTTVLQSIKAYLEFLKMNGTASRYLAII 364

Query: 367 IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECEL 426
                     + K+ K +KP++L+RLYD +++   +++++  +  ++        +  E+
Sbjct: 365 ---------DNTKSEKKSKPQDLLRLYDSVIEIYKEVAEIPGADHDK-----NLIQAFEV 410

Query: 427 KSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKT 486
           K   +RA RCFY+A SYS   K +EA AL+ R  S  ++A    +++ +S   +  E ++
Sbjct: 411 KVEYYRAFRCFYMASSYSALHKYSEAAALFDRTVSRVQDAEGKLKKLKSS-SFITNETQS 469

Query: 487 LCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKF-----LLEKLD 541
              E RS   +E AK   V  +A+          S +G  K   ++ K      LLE ++
Sbjct: 470 SLNELRSE--VESAK---VTVRAAR-------LASAAGDVKTDSELAKIIDKRPLLETVN 517

Query: 542 VYESAVGDSNVKGAARIE--AFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 596
            +      +++K    I   + PPAF  +   PI  DLA   +  P++++R++K +K
Sbjct: 518 EWRQWDVRNSLKDKKTIPVASLPPAFIPMPNKPIFFDLANFHLTMPNVDDRLEKLQK 574

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. SRP68 binds the 7S RNA, SRP72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Caenorhabditis elegans (taxid: 6239)

>sp|Q1ZXE8|SRP68_DICDI Signal recognition particle subunit SRP68 OS=Dictyostelium discoideum GN=srp68 PE=3 SV=1

 Score =  173 bits (439), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 161/640 (25%), Positives = 299/640 (46%), Gaps = 74/640 (11%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           MA N  TS  E         D    KF +++L   +++Q+Q GLR  DY +YR+YC+ R+
Sbjct: 1   MATNISTSPKE---------DVPKEKFHLDILNFSQTSQIQFGLRLQDYKKYRQYCSKRI 51

Query: 61  RRLYKSLKFTHGRGKYTRKAI-----TESTVTEVRFLHLVLYTAERAWSHAME-KRQLPD 114
           +RL   L+  +G+  Y  K +     TE  + +VR+L + L   ERAWS+AM+ K Q   
Sbjct: 52  QRLRSQLRKQYGKKNYVNKIVLNGGETEKQINDVRYLQISLLKTERAWSYAMDLKAQFEK 111

Query: 115 GPNARQRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWE 174
             ++R   ++  R  KA + +T    LC + AD  T +EA AY+S+M  +L   + Q+++
Sbjct: 112 DNDSRIGFHMNRRFGKASRNSTQLYELCKLVADQYTIIEAHAYSSWMASSLSLTK-QDFK 170

Query: 175 TALKNFKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKI----GESNVKTSEL 230
            AL+    ++ +YE+L + GD   + L ++R+EE EP IR+CL+ +      SN  +   
Sbjct: 171 KALEEINISKTIYEKLSEQGDHSQKELYQKRIEETEPIIRFCLYNLKNEKNTSNKVSQNT 230

Query: 231 LQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEF--------HWLGHRFPISNAKTRV 282
           L I E     L   ++K ++  +   +  A +  E+          L  +  I N   + 
Sbjct: 231 LTIIEQSLEELKNQENKKKSSTSSTTTTTATTTIEWKSKSIKVDEKLDEKLKIFNEFKKE 290

Query: 283 AILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDL 342
                 +L K+++     +        I+DK+          +++DL++     N+K+  
Sbjct: 291 ---NENKLPKNINASIDTTSNISPIFNIYDKLVYNLINCETIVKNDLSTLVRV-NLKN-- 344

Query: 343 FGLDKAVSAVLGQRTI----------------ERNQLLVSIVKGKLTKQRDDKTGKVTKP 386
               K+V + + +++                 ERN +L+++++  L  ++ D++  + K 
Sbjct: 345 ----KSVKSEIEEQSTRILLAYIMYHKMKYLYERNSILITMMQRVLDGEKVDESA-IKKK 399

Query: 387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVK-FAEECELKSLAFRAERCFYLARSYSL 445
            + V   DL+  +T  +         R  +  K  A + + + +  ++ R +Y+A   + 
Sbjct: 400 VKKVTWNDLVRLSTHQVKVYTIMSESRDTDSNKEIARDQDAQLILLKSIRLYYIAVCLAK 459

Query: 446 AGKRTEAYALYCRARSHAENALKDFQRMANSDQMMI----EELKTLCKECRSNSCIEHAK 501
           + K +E  A+  R  ++ +N      R  N+    I     EL++  K+ RS     HA 
Sbjct: 460 SLKFSETMAVLDRVLTNIQNV-----RKTNTKNQQILNDTNELESNIKKQRSQI---HAN 511

Query: 502 GIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIEAF 561
             + +   +++L N++S++SI G    S + +  L+  LD +     D++     ++   
Sbjct: 512 SFIQQLSENQDLKNQMSSLSIGGITTASGKSND-LISGLDSF-----DTSFLTEKKLVQL 565

Query: 562 PPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISR 601
           PP  Q +   PI  DLA+N + FPSL+ R K    G  S+
Sbjct: 566 PPQLQPVQAKPIFFDLAFNSVTFPSLDQRKKGSSTGTPSK 605

Signal-recognition-particle assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum membrane. Srp68 binds the 7S RNA, srp72 binds to this complex subsequently. This ribonucleoprotein complex might interact directly with the docking protein in the ER membrane and possibly participate in the elongation arrest function.

Dictyostelium discoideum (taxid: 44689)

>sp|O74436|SRP68_SCHPO Signal recognition particle subunit srp68 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=srp68 PE=3 SV=1

 Score = 47.8 bits (112), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 101/214 (47%), Gaps = 28/214 (13%)

Query: 31  VLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHGRGKYTRKAITESTVTEVR 90
           +  LL  A+  H     +Y +Y    + R+  L KSL  T   GK       +S+V + R
Sbjct: 61  IFPLLLEARSDHFYEGNEYIKY---LSHRIHGLRKSLHITQRGGK------PKSSVDK-R 110

Query: 91  FLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWA---TLFSNLCAIKAD 147
           +  ++L+ A+RA+   +  R       + QR + + RL++A ++      F+N      D
Sbjct: 111 YAEILLFNADRAFQQFVFLR-------SSQRRHALRRLKRADQFGKELVSFTNAFDCN-D 162

Query: 148 PRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDV----ENQVLCR 203
               LEA A+A Y++G L +E+ ++WE +L  F  +R  +  L    D     E  VL  
Sbjct: 163 HIFYLEAIAFAKYIEGTLNYEK-RDWEGSLSAFSISRLSFLVLQNKIDTLAEHEKSVLG- 220

Query: 204 ERVEELEPSIRYCLHKIGESN-VKTSELLQIGEM 236
           E   +++ ++RY   + G  N  K+ ++L +  +
Sbjct: 221 ELQNQIDSNLRYVAQRTGLQNQTKSLDILMLSSI 254

Signal-recognition-particle (SRP) assembly has a crucial role in targeting secretory proteins to the rough endoplasmic reticulum (ER) membrane. SRP is required for the cotranslational protein translocation for ER import and preferentially recognizes strongly hydrophobic signal sequences. It is involved in targeting the nascent chain-ribosome (RNC) complex to the ER and is proposed to participate in the arrest of nascent chain elongation during membrane targeting. Srp68 binds the 7S RNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
255540061	594	Signal recognition particle 68 kDa prote	0.981	0.998	0.835	0.0
224136328	601	predicted protein [Populus trichocarpa]	0.995	1.0	0.826	0.0
224122166	602	predicted protein [Populus trichocarpa]	0.995	0.998	0.814	0.0
225456479	595	PREDICTED: signal recognition particle 6	0.985	1.0	0.809	0.0
356513465	603	PREDICTED: signal recognition particle 6	0.991	0.993	0.782	0.0
357520603	603	Signal recognition particle 68 kDa prote	0.991	0.993	0.773	0.0
356527514	603	PREDICTED: signal recognition particle 6	0.991	0.993	0.780	0.0
449476147	594	PREDICTED: signal recognition particle 6	0.980	0.996	0.795	0.0
297793755	608	hypothetical protein ARALYDRAFT_496370 [	0.990	0.983	0.786	0.0
18424534	605	signal recognition particle subunit SRP6	0.988	0.986	0.782	0.0

>gi|255540061|ref|XP_002511095.1| Signal recognition particle 68 kDa protein, putative [Ricinus communis] gi|223550210|gb|EEF51697.1| Signal recognition particle 68 kDa protein, putative [Ricinus communis]

 Score = 1046 bits (2706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 498/596 (83%), Positives = 547/596 (91%), Gaps = 3/596 (0%)

Query: 9   AMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLK 68
           AM+ID  KS NS+QI P++SINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLK
Sbjct: 2   AMDIDGPKSNNSEQISPRYSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLK 61

Query: 69  FTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRL 128
           FTHGRGKYTR+AITESTVTEVRFLHLVLY+AERAWSHAMEKRQLPDGPNARQRIYLIGRL
Sbjct: 62  FTHGRGKYTRRAITESTVTEVRFLHLVLYSAERAWSHAMEKRQLPDGPNARQRIYLIGRL 121

Query: 129 RKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYE 188
           RKAV+WA LFS LCA K D RTSLEAEAYA+YM GNLLFEQD+NW+TALKNF SARAVYE
Sbjct: 122 RKAVQWANLFSQLCAAKGDSRTSLEAEAYAAYMNGNLLFEQDRNWDTALKNFISARAVYE 181

Query: 189 ELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKL 248
           ELGKYGD+ENQVLCRERVEELEPSIRYC HKIG+SN++TS+LLQIGEMEGPALDLFK+KL
Sbjct: 182 ELGKYGDLENQVLCRERVEELEPSIRYCRHKIGQSNLQTSDLLQIGEMEGPALDLFKTKL 241

Query: 249 EAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKL 308
           EAVMAEARSQQAASLTEFHWLGH+FPISNAKTRVAILKAQELEKDLH  AADSLPAEKKL
Sbjct: 242 EAVMAEARSQQAASLTEFHWLGHKFPISNAKTRVAILKAQELEKDLHGSAADSLPAEKKL 301

Query: 309 VIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSIV 368
           V+FDKIF AYHEAR CIRSDL SAGNA++VKDDL GLDKAVSAVLGQRTIERNQLLVSI 
Sbjct: 302 VVFDKIFAAYHEARSCIRSDLVSAGNADSVKDDLSGLDKAVSAVLGQRTIERNQLLVSIA 361

Query: 369 KGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKS 428
           K K  K+RDDK  K+T+PEELVRLYDLLLQNT+DLSDLVSSGR+ KPEEV F+E+C L+S
Sbjct: 362 KSKFIKRRDDKNEKLTRPEELVRLYDLLLQNTSDLSDLVSSGRDTKPEEVAFSEDCALRS 421

Query: 429 LAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLC 488
           LAFRA+RCFYLA+SYSLAGKRTEAY+LYCRARS +ENAL+ FQ + N+D++M++ELKTL 
Sbjct: 422 LAFRAQRCFYLAKSYSLAGKRTEAYSLYCRARSLSENALQKFQSLNNTDEIMVKELKTLY 481

Query: 489 KECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVG 548
            ECRSNSCIEHA GIM +EKA ENLS K+S +S+SG  KK   V+KFLLEKLDVYESAVG
Sbjct: 482 NECRSNSCIEHASGIMEDEKAPENLSKKVSAISLSGGDKK---VEKFLLEKLDVYESAVG 538

Query: 549 DSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLWR 604
           D +VK   RIE FPPAFQ+I RNPI+LDLAYN+IDFPSLENRMKKD+KGFISRLWR
Sbjct: 539 DPHVKAPPRIEVFPPAFQTIPRNPIILDLAYNYIDFPSLENRMKKDKKGFISRLWR 594

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136328|ref|XP_002322302.1| predicted protein [Populus trichocarpa] gi|222869298|gb|EEF06429.1| predicted protein [Populus trichocarpa]

 Score = 1034 bits (2673), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/604 (82%), Positives = 541/604 (89%), Gaps = 3/604 (0%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K +E  AME+D  KS NSDQI P++SINVLQLLKSAQMQHGLRHGDY RYRRYCTARL
Sbjct: 1   MGKENEAIAMEVDGPKSNNSDQINPRYSINVLQLLKSAQMQHGLRHGDYARYRRYCTARL 60

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKYTR+AI ESTVTEVR+LH+VLYTAERAWSHAMEKRQL DGPNA+Q
Sbjct: 61  RRLYKSLKFTHGRGKYTRRAINESTVTEVRYLHMVLYTAERAWSHAMEKRQLLDGPNAKQ 120

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWA LFS LCA K D RTSLEAEAYASYM G LLFEQD+NW+TALKNF
Sbjct: 121 RIYLIGRLRKAVKWADLFSGLCAAKGDSRTSLEAEAYASYMNGLLLFEQDRNWDTALKNF 180

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
            S+RAVYEELGKYGD+ENQVLCRERVEELEPSIRYC HKIGESN+KTSELLQIGEMEGPA
Sbjct: 181 ISSRAVYEELGKYGDLENQVLCRERVEELEPSIRYCRHKIGESNLKTSELLQIGEMEGPA 240

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLFK+KLEA MAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLH   AD
Sbjct: 241 LDLFKAKLEAAMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHGPTAD 300

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           S+PAEKKL +FDKIFTAYHEAR  IRSDL SAGNA++VKD+L GLDKAVSAVLGQRTIER
Sbjct: 301 SIPAEKKLAVFDKIFTAYHEARSFIRSDLVSAGNADSVKDELNGLDKAVSAVLGQRTIER 360

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           NQLLVSI K KLT++RDDK  KVTKPEELVRLYDLLLQNTADLSDLVSSGR+RKPEEV+F
Sbjct: 361 NQLLVSIAKSKLTRRRDDKNEKVTKPEELVRLYDLLLQNTADLSDLVSSGRDRKPEEVEF 420

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMM 480
            E+C+L+S AFRA+RCFYLA+SYS AGKR EAY LYC ARS AENALK FQ + ++D++ 
Sbjct: 421 TEDCDLRSTAFRAQRCFYLAKSYSSAGKRAEAYVLYCHARSLAENALKKFQTVTSTDEVT 480

Query: 481 IEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKL 540
           I+EL+TL  ECR+NSCIEHA GIM  EK SENLS K+ST+S+SG  KK   V+KFLLEKL
Sbjct: 481 IKELRTLNNECRANSCIEHATGIMEHEKVSENLSKKVSTISLSGVDKK---VEKFLLEKL 537

Query: 541 DVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFIS 600
           DVYESAVG+ NVK   RIE FPPAFQSI RNPIVLDLAYN IDFPSLENRMKKD+KGFIS
Sbjct: 538 DVYESAVGEPNVKSVPRIEVFPPAFQSIPRNPIVLDLAYNCIDFPSLENRMKKDKKGFIS 597

Query: 601 RLWR 604
           RLWR
Sbjct: 598 RLWR 601

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122166|ref|XP_002318768.1| predicted protein [Populus trichocarpa] gi|222859441|gb|EEE96988.1| predicted protein [Populus trichocarpa]

 Score = 1011 bits (2613), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/605 (81%), Positives = 535/605 (88%), Gaps = 4/605 (0%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSIN-VLQLLKSAQMQHGLRHGDYTRYRRYCTAR 59
           M K +E +AMEI+  K  NSDQI P++SIN +LQLLKSAQMQHGLRHGDY RYRRYC AR
Sbjct: 1   MVKENEVAAMEIEGPKPNNSDQINPRYSINGILQLLKSAQMQHGLRHGDYARYRRYCIAR 60

Query: 60  LRRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNAR 119
           LRRLYKSLKFTHGRGKYTR+A+ ESTVTEVR+LHLVLYTAERAWSHAMEKRQL DGPNA+
Sbjct: 61  LRRLYKSLKFTHGRGKYTRRAMNESTVTEVRYLHLVLYTAERAWSHAMEKRQLLDGPNAK 120

Query: 120 QRIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
           QRIYLIGRLRKAVKWA LFS LCA K D RTSLEAEAYAS M G LLFEQD+NW+TALKN
Sbjct: 121 QRIYLIGRLRKAVKWADLFSRLCAAKGDSRTSLEAEAYASCMNGLLLFEQDRNWDTALKN 180

Query: 180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
           F SARAVYEELGKYGD+ENQVLCRERVEELEPS+RYC HKIGESN+KTSELLQIGEMEGP
Sbjct: 181 FISARAVYEELGKYGDLENQVLCRERVEELEPSVRYCRHKIGESNLKTSELLQIGEMEGP 240

Query: 240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
           ALDLFK+KLEA MAEARSQQAASLTEF WLGHRFPISNAKTRV+ILKAQELEKDLH  AA
Sbjct: 241 ALDLFKAKLEAAMAEARSQQAASLTEFRWLGHRFPISNAKTRVSILKAQELEKDLHGPAA 300

Query: 300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIE 359
           DSLP EKKL +FDKI+TAY EAR  IRSDLASAGNA++VKDDL GLDKAV AVLGQRTIE
Sbjct: 301 DSLPVEKKLAVFDKIYTAYQEARSFIRSDLASAGNADSVKDDLNGLDKAVGAVLGQRTIE 360

Query: 360 RNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVK 419
           RNQLLVSI K KL + RDDK  KVTKPEELVRLYDLLLQNT DLSDLVSSGR+RKPEEV 
Sbjct: 361 RNQLLVSIAKSKLARHRDDKNEKVTKPEELVRLYDLLLQNTGDLSDLVSSGRDRKPEEVA 420

Query: 420 FAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQM 479
           F+E+C L+S+AFRA+RCFYLA+SYS AGKRTEAYALYC ARS AENALK FQ M ++D+ 
Sbjct: 421 FSEDCVLRSMAFRAQRCFYLAKSYSSAGKRTEAYALYCHARSLAENALKKFQTMMDTDEA 480

Query: 480 MIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEK 539
           M +ELKTL  ECR+NSCIEHA GIM +EKA ENLS KIST+S+SG  KK+   +KFL+EK
Sbjct: 481 MTKELKTLYNECRANSCIEHATGIMEDEKAPENLSKKISTISLSGVDKKA---EKFLVEK 537

Query: 540 LDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFI 599
           LDVYESAVG+ NVK   RI  FPPAFQSI RNPIVLDLAYN IDFPSLENRMKKD+KGFI
Sbjct: 538 LDVYESAVGEPNVKSVPRIGVFPPAFQSIPRNPIVLDLAYNCIDFPSLENRMKKDKKGFI 597

Query: 600 SRLWR 604
           SRLWR
Sbjct: 598 SRLWR 602

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456479|ref|XP_002284577.1| PREDICTED: signal recognition particle 68 kDa protein [Vitis vinifera] gi|147791928|emb|CAN67894.1| hypothetical protein VITISV_040392 [Vitis vinifera] gi|297734504|emb|CBI15751.3| unnamed protein product [Vitis vinifera]

 Score =  998 bits (2581), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 489/604 (80%), Positives = 531/604 (87%), Gaps = 9/604 (1%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K ++ S M+IDD+KS NSD   PKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL
Sbjct: 1   MGKENQVSDMQIDDQKS-NSDHANPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 59

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKYTR++ITESTVTEVRFLHL+LYTAERAWSHAMEKRQLPDGPNARQ
Sbjct: 60  RRLYKSLKFTHGRGKYTRRSITESTVTEVRFLHLILYTAERAWSHAMEKRQLPDGPNARQ 119

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWATLFS LCAIK D +TSLEAEAYASYMKG LLFEQDQNW+ ALK F
Sbjct: 120 RIYLIGRLRKAVKWATLFSQLCAIKGDSKTSLEAEAYASYMKGTLLFEQDQNWDMALKLF 179

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
           KS+RAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG SN  T ELL    MEGPA
Sbjct: 180 KSSRAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGASNSLTPELLH---MEGPA 236

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLF++KLEAVMAEARSQQAAS+TEFHWLGHRFPISNAKTRV+ILKAQ+LEKDLH  AAD
Sbjct: 237 LDLFRAKLEAVMAEARSQQAASMTEFHWLGHRFPISNAKTRVSILKAQDLEKDLHGPAAD 296

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           SLPAEKKL IFDKIFTAYHEAR  IR+DL +AG+A N+KDDL GLDKAVSAVLG+RTIER
Sbjct: 297 SLPAEKKLGIFDKIFTAYHEARSSIRNDLVTAGSAGNMKDDLNGLDKAVSAVLGERTIER 356

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           NQLL+ I K KLTKQ  +K  K TKPEELVRLYDLLLQN ADLSDLVSSGR+RKPEEV F
Sbjct: 357 NQLLIRIAKSKLTKQ--EKNEKATKPEELVRLYDLLLQNVADLSDLVSSGRDRKPEEVSF 414

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMM 480
            EEC LKSLAFRAERCFYLA+SYSLAGKRTEAYALY  ARS A++AL+  Q  +N+DQ +
Sbjct: 415 TEECALKSLAFRAERCFYLAKSYSLAGKRTEAYALYSHARSLADDALQKLQASSNNDQTL 474

Query: 481 IEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKL 540
           I+ LK L  +CRSNSCIEHA  IM EEKA ENLS KIS +S++G  KK   V+  L+EKL
Sbjct: 475 IKGLKMLYNDCRSNSCIEHATVIMEEEKAPENLSQKISNISLAGAHKK---VETSLMEKL 531

Query: 541 DVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFIS 600
           DVYES VG SNVK   RIEAFPPAFQ+I RNPIVLD+AYNF+DFPSLENRMKKD+KGFIS
Sbjct: 532 DVYESLVGASNVKSVPRIEAFPPAFQTIPRNPIVLDIAYNFVDFPSLENRMKKDKKGFIS 591

Query: 601 RLWR 604
           RLWR
Sbjct: 592 RLWR 595

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513465|ref|XP_003525434.1| PREDICTED: signal recognition particle 68 kDa protein-like [Glycine max]

 Score =  992 bits (2564), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/606 (78%), Positives = 540/606 (89%), Gaps = 7/606 (1%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K S+TSAMEID  KS+NSD I PKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL
Sbjct: 1   MGKESQTSAMEIDAPKSMNSDLIVPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKY ++A+TESTVTEVRFLH++LYTAERAWSHAMEKRQLP+GPNARQ
Sbjct: 61  RRLYKSLKFTHGRGKYAKRALTESTVTEVRFLHVILYTAERAWSHAMEKRQLPNGPNARQ 120

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWATLFS LCA+KAD RTSLEAEAY SYMKG+LLFEQDQNW+ ALKNF
Sbjct: 121 RIYLIGRLRKAVKWATLFSQLCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKNF 180

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
           KSARAVYEELGKYGD++NQVLCRERVEELEPSIRYCLHKIG+S+++ SELLQI ++EGPA
Sbjct: 181 KSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSDLQASELLQISDVEGPA 240

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLFK+KLEA MAEARSQQAAS+TEF WLGHRFPISNAKTRV+ILKAQELEKD+H   AD
Sbjct: 241 LDLFKAKLEAAMAEARSQQAASMTEFLWLGHRFPISNAKTRVSILKAQELEKDIHGPLAD 300

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           S+PA+K+LVIFDKIF+AYHEARG IR+DLA+ G+ E+VKDDL GLDKAVSAVLG+RTI+R
Sbjct: 301 SIPADKRLVIFDKIFSAYHEARGYIRADLATTGSTESVKDDLNGLDKAVSAVLGERTIDR 360

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           N LLV + K KL K+ DDK  K+TKPEELVRLYDLLLQNT DLSDLVSSGR++KPEEV F
Sbjct: 361 NLLLVKVAKSKLAKRHDDKNEKLTKPEELVRLYDLLLQNTGDLSDLVSSGRDKKPEEVIF 420

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMM 480
           AE C  KSLAFRA+RCFY+A+SYS+AGKR EAYALYCRAR+ A++ALK FQ +   ++ M
Sbjct: 421 AEVCSCKSLAFRAQRCFYVAKSYSVAGKRAEAYALYCRARNLADDALKKFQMLDGDNKTM 480

Query: 481 IEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKL 540
           ++EL+ LC ECRSNSCIEHA GIM E+K  ENLS ++S +S++GT +    ++KFLLEKL
Sbjct: 481 MKELEDLCNECRSNSCIEHALGIMEEKKTQENLSERVSNISLTGTER----LEKFLLEKL 536

Query: 541 DVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK---G 597
           DVYESAVGDSNVK   RI  FPPAFQ+I+RNPIVLDLAYN I+FP +ENRMKKDRK   G
Sbjct: 537 DVYESAVGDSNVKCTPRIAGFPPAFQAISRNPIVLDLAYNMIEFPPIENRMKKDRKAKGG 596

Query: 598 FISRLW 603
           FISR++
Sbjct: 597 FISRIF 602

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520603|ref|XP_003630590.1| Signal recognition particle 68 kDa protein [Medicago truncatula] gi|355524612|gb|AET05066.1| Signal recognition particle 68 kDa protein [Medicago truncatula]

 Score =  991 bits (2563), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/606 (77%), Positives = 539/606 (88%), Gaps = 7/606 (1%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K +++SAME+DD KS NSDQI PKFSI VLQLLKSAQMQHGLRHGDYTRYRRYCTARL
Sbjct: 1   MGKENQSSAMEVDDPKSTNSDQIVPKFSITVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKYT++ +TES VTEVRFLH++LY+AERAWSHAMEKRQLP+GPNA Q
Sbjct: 61  RRLYKSLKFTHGRGKYTKRTLTESNVTEVRFLHVILYSAERAWSHAMEKRQLPNGPNASQ 120

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWATLFS  CA+KAD RTSLEAEAY SYMKG+LLFEQDQNW+ ALK+F
Sbjct: 121 RIYLIGRLRKAVKWATLFSQFCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKHF 180

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
           KSARAVYEELGKYGD++NQVLCRERVEELEPSIRYCLHKIG+SN++ SELL IG+MEGPA
Sbjct: 181 KSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSNLQASELLNIGDMEGPA 240

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLFK+KLEA MAEARSQQAAS+TEFHWLGHRFPISNAKTRVAILKAQELEKD+H   A+
Sbjct: 241 LDLFKAKLEAAMAEARSQQAASMTEFHWLGHRFPISNAKTRVAILKAQELEKDIHGPLAE 300

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           ++ A+K+LV FDKIF+AYH+ARGCIR+DLA+AGNAE+VKDDL GLDKAVSAVLG+RTIER
Sbjct: 301 NISADKRLVTFDKIFSAYHDARGCIRADLATAGNAESVKDDLNGLDKAVSAVLGERTIER 360

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           N LLV + K KL K+ DDK  K+TKPEELVRLYDLLLQNT+DLSDLVSSGR++KPEEV F
Sbjct: 361 NLLLVKVAKSKLAKRNDDKNEKLTKPEELVRLYDLLLQNTSDLSDLVSSGRDQKPEEVSF 420

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMM 480
           AEEC  KSLAFRAERCFY+A+SYS+AGKR EAYALYCRARS AE+AL   Q++  + + M
Sbjct: 421 AEECSCKSLAFRAERCFYVAKSYSVAGKRAEAYALYCRARSLAEDALGKLQKLEGNSKTM 480

Query: 481 IEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKL 540
           ++EL+ LC ECRSNSCIEHA GIM E++  EN+S  IS +S++G  +    ++KFLLEKL
Sbjct: 481 VKELEVLCNECRSNSCIEHALGIMEEKRTQENISEGISNISLTGAER----LEKFLLEKL 536

Query: 541 DVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK---G 597
           DVYESAVGDSNVK A RI  FPPAFQ+IARNPIVLDLAYN I+FP +++RMKKD++   G
Sbjct: 537 DVYESAVGDSNVKSAPRIAPFPPAFQAIARNPIVLDLAYNTIEFPDIQSRMKKDKRAKGG 596

Query: 598 FISRLW 603
           FISR++
Sbjct: 597 FISRIF 602

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527514|ref|XP_003532354.1| PREDICTED: signal recognition particle 68 kDa protein-like [Glycine max]

 Score =  990 bits (2559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/606 (78%), Positives = 538/606 (88%), Gaps = 7/606 (1%)

Query: 1   MAKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60
           M K S  SAMEID  KS +SDQI PKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL
Sbjct: 1   MGKESRASAMEIDAPKSTSSDQIVPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARL 60

Query: 61  RRLYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
           RRLYKSLKFTHGRGKY +KA+TESTVTEVRFLH++LYTAERAWSHAMEKRQLP+GPNARQ
Sbjct: 61  RRLYKSLKFTHGRGKYAKKALTESTVTEVRFLHVILYTAERAWSHAMEKRQLPNGPNARQ 120

Query: 121 RIYLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF 180
           RIYLIGRLRKAVKWATLFS LCA+KAD RTSLEAEAY SYMKG+LLFEQDQNW+ ALKNF
Sbjct: 121 RIYLIGRLRKAVKWATLFSLLCAVKADSRTSLEAEAYESYMKGSLLFEQDQNWDVALKNF 180

Query: 181 KSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPA 240
           KSARAVYEELGKYGD++NQVLCRERVEELEPSIRYCLHKIG+SN++ SELLQIG++EGPA
Sbjct: 181 KSARAVYEELGKYGDLDNQVLCRERVEELEPSIRYCLHKIGQSNLQASELLQIGDVEGPA 240

Query: 241 LDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAAD 300
           LDLFK+KLEA MAEARSQQAAS+TEF WLGHRFPISNAKTRV+ILK+QELEKD+H   AD
Sbjct: 241 LDLFKAKLEAAMAEARSQQAASMTEFIWLGHRFPISNAKTRVSILKSQELEKDVHGPLAD 300

Query: 301 SLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIER 360
           S+PA+K+LVIFDKIF+AYHEARG IR+DLA+ G+ E+VKDDL GLDKAVSAVLG+RTIER
Sbjct: 301 SIPADKRLVIFDKIFSAYHEARGYIRADLATTGSTESVKDDLNGLDKAVSAVLGERTIER 360

Query: 361 NQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKF 420
           N LLV + K KL  + DDK  K+TKPEELVRLYDLLLQNTADLSDLV+SGR++KPEEV F
Sbjct: 361 NLLLVKVAKSKLANRHDDKNEKLTKPEELVRLYDLLLQNTADLSDLVNSGRDKKPEEVSF 420

Query: 421 AEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMM 480
           AE C  KSLAFRA+RCFY+A+SYS+AGKR EAYALYCRA + A++ALK FQ +   +++M
Sbjct: 421 AEVCSYKSLAFRAQRCFYVAKSYSVAGKRAEAYALYCRAHNLADDALKKFQMLDGDNKIM 480

Query: 481 IEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKL 540
           ++EL+ LC ECRSNSCIEHA GIM E+K  ENLS ++S +S++GT +    ++KFLLEKL
Sbjct: 481 MKELEDLCNECRSNSCIEHASGIMEEKKTQENLSERVSNISLTGTER----LEKFLLEKL 536

Query: 541 DVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK---G 597
           DVYESAVGDSNVK   RI  FPPAFQ+I+RNPIVLDLAYN I+FP +ENRMKKDRK   G
Sbjct: 537 DVYESAVGDSNVKCTPRIAGFPPAFQAISRNPIVLDLAYNMIEFPPIENRMKKDRKAKGG 596

Query: 598 FISRLW 603
            ISR++
Sbjct: 597 LISRIF 602

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449476147|ref|XP_004154654.1| PREDICTED: signal recognition particle 68 kDa protein-like [Cucumis sativus]

 Score =  981 bits (2536), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/596 (79%), Positives = 523/596 (87%), Gaps = 4/596 (0%)

Query: 8   SAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSL 67
           ++ME+D   S   D   P+FS+NVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSL
Sbjct: 2   ASMEVDSANSNTFDPDNPRFSVNVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSL 61

Query: 68  KFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGR 127
           KFTHGRGKYT++AIT+STV+EVR+LH+VLYTAERAWSHAMEKRQLPDGPN RQRIYLIGR
Sbjct: 62  KFTHGRGKYTKRAITQSTVSEVRYLHVVLYTAERAWSHAMEKRQLPDGPNPRQRIYLIGR 121

Query: 128 LRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVY 187
           LRKAVKWATLF+ LCA K D RTSLEAEAYASYM GNLLFEQD+NW+TAL NFK ARAVY
Sbjct: 122 LRKAVKWATLFAQLCASKGDSRTSLEAEAYASYMTGNLLFEQDRNWDTALLNFKRARAVY 181

Query: 188 EELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSK 247
           EELGK GD+ENQVLCRERVEELEPSIRYCLHKIG+SN++ SELL IGEMEGPALDLFK+K
Sbjct: 182 EELGKVGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQASELLHIGEMEGPALDLFKAK 241

Query: 248 LEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKK 307
           LEAVM+EARSQQA S+TEFHWLGHRFPISNAKTRV+ILKA+ELEKDL   +ADSLPAEK+
Sbjct: 242 LEAVMSEARSQQAVSMTEFHWLGHRFPISNAKTRVSILKARELEKDLQ-SSADSLPAEKR 300

Query: 308 LVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVSI 367
           L IFDKIF AYHEAR  IRSDL SAGNAE+VKDDL GLDKAVSAVLGQRTIERNQLLV I
Sbjct: 301 LSIFDKIFAAYHEARSSIRSDLVSAGNAESVKDDLSGLDKAVSAVLGQRTIERNQLLVKI 360

Query: 368 VKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELK 427
            K KL ++ D+K  KVTKPEELVRLYDLLLQN ADLSDLVSSGR+R+ EEV FAEEC LK
Sbjct: 361 AKSKLVRRHDEKNEKVTKPEELVRLYDLLLQNIADLSDLVSSGRDRRQEEVTFAEECSLK 420

Query: 428 SLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTL 487
           SLAFR ERCFYLA+SYSLAGKR EAY LYC ARS  E+A++ F+    SD  +IEELKTL
Sbjct: 421 SLAFRGERCFYLAKSYSLAGKRAEAYVLYCHARSLIEDAIQKFRTANISDPKLIEELKTL 480

Query: 488 CKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAV 547
            +ECR NSC+EHA GI+ E KA ENLS KIS +S++G  KKS    K+LL+ LD YESAV
Sbjct: 481 IEECRVNSCVEHATGIIEEAKAPENLSKKISNMSLTGAEKKS---AKYLLQSLDNYESAV 537

Query: 548 GDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISRLW 603
           GDSN+K A RIEAFPPAFQ+I RNPIVLD+A+NFIDFPSLENRMKKDRKGFISRLW
Sbjct: 538 GDSNIKTAPRIEAFPPAFQAIPRNPIVLDIAFNFIDFPSLENRMKKDRKGFISRLW 593

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297793755|ref|XP_002864762.1| hypothetical protein ARALYDRAFT_496370 [Arabidopsis lyrata subsp. lyrata] gi|297310597|gb|EFH41021.1| hypothetical protein ARALYDRAFT_496370 [Arabidopsis lyrata subsp. lyrata]

 Score =  981 bits (2535), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/604 (78%), Positives = 531/604 (87%), Gaps = 6/604 (0%)

Query: 3   KNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRR 62
           K SE SAMEIDD KS +SDQI P+FSINVLQL+KS+Q QHGLRHGDY RYRRYC+ARLRR
Sbjct: 4   KESEVSAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCSARLRR 63

Query: 63  LYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRI 122
           LYKSLKFTHGRGKYTR+AI ESTVT+VRFLH+V Y AERAWSHAMEKRQLPDGPNARQRI
Sbjct: 64  LYKSLKFTHGRGKYTRRAILESTVTDVRFLHVVFYMAERAWSHAMEKRQLPDGPNARQRI 123

Query: 123 YLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
           YL+GRLRKAVKWA+LFS+LC+IK D RTSLEAEAYASYMKG LLFEQDQNWET L  FK+
Sbjct: 124 YLVGRLRKAVKWASLFSSLCSIKTDSRTSLEAEAYASYMKGTLLFEQDQNWETGLACFKN 183

Query: 183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
           ARAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG+SN++TSELLQIGEMEGPALD
Sbjct: 184 ARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQTSELLQIGEMEGPALD 243

Query: 243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
           LFK+K+EA M EARSQQAASLTEF+WLG+RFP+SN K+RV+ILKAQELEK+L    A+SL
Sbjct: 244 LFKAKIEAAMEEARSQQAASLTEFNWLGYRFPVSNPKSRVSILKAQELEKELQGPTAESL 303

Query: 303 PAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQ 362
           P EKKL IFDK+FTAYH+AR  IR+DL SAGNAE+VKDDL GLDKAV AVLGQRTIERNQ
Sbjct: 304 PVEKKLTIFDKLFTAYHDARNTIRNDLVSAGNAESVKDDLNGLDKAVGAVLGQRTIERNQ 363

Query: 363 LLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAE 422
           LLV I K KL ++RDDK+ KVT+PEELVRLYDLLLQN ADLSDL+SSGR+RKPEE+ F E
Sbjct: 364 LLVKIAKSKLNRKRDDKSEKVTRPEELVRLYDLLLQNVADLSDLISSGRDRKPEEIAFEE 423

Query: 423 ECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIE 482
           EC+ KSLAFRAERCFYLA+SYSLAGKR EA+ALY RARS AE+AL  FQ +A  D+  I+
Sbjct: 424 ECQRKSLAFRAERCFYLAKSYSLAGKRAEAFALYSRARSLAEDALNKFQSIAKKDEGTIQ 483

Query: 483 ELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQV-DKFLLEKLD 541
           ELKTL KECR+NSCIEHA GIM EE+  ENLSN+IST+SI+ T     QV +K+LL+KLD
Sbjct: 484 ELKTLIKECRANSCIEHATGIMEEERVPENLSNRISTISINDTAA---QVEEKYLLDKLD 540

Query: 542 VYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGFISR 601
           VYESAVGDSN K A +IE FPPAFQSI RNPIVLDLAY+ IDFP +ENRMKK   GF+SR
Sbjct: 541 VYESAVGDSNTKTAPKIERFPPAFQSIPRNPIVLDLAYHCIDFPDIENRMKKKGGGFMSR 600

Query: 602 --LW 603
             LW
Sbjct: 601 ISLW 604

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18424534|ref|NP_568947.1| signal recognition particle subunit SRP68 [Arabidopsis thaliana] gi|9758397|dbj|BAB08884.1| signal recognition particle 68kD protein-like [Arabidopsis thaliana] gi|15293137|gb|AAK93679.1| putative signal recognition particle protein [Arabidopsis thaliana] gi|19310613|gb|AAL85037.1| putative signal recognition particle protein [Arabidopsis thaliana] gi|332010161|gb|AED97544.1| signal recognition particle subunit SRP68 [Arabidopsis thaliana]

 Score =  976 bits (2524), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 474/606 (78%), Positives = 529/606 (87%), Gaps = 9/606 (1%)

Query: 3   KNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRR 62
           K SE SAMEIDD KS +SDQI P+FSINVLQL+KS+Q QHGLRHGDY RYRRYC+ARLRR
Sbjct: 4   KQSEISAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCSARLRR 63

Query: 63  LYKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRI 122
           LYKSLKFTHGRGKYTR+AI ESTVT+VRFLH+V Y AERAWSHAMEKRQLPDGPNARQRI
Sbjct: 64  LYKSLKFTHGRGKYTRRAILESTVTDVRFLHVVFYMAERAWSHAMEKRQLPDGPNARQRI 123

Query: 123 YLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
           YL+GRLRKAVKWA+LFS+LC+IK D RTSLEAEAYASYMKG LLFEQDQNWET L  FK+
Sbjct: 124 YLVGRLRKAVKWASLFSSLCSIKTDSRTSLEAEAYASYMKGTLLFEQDQNWETGLACFKN 183

Query: 183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
           ARAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG+SN++TSELLQIGEMEGPALD
Sbjct: 184 ARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQTSELLQIGEMEGPALD 243

Query: 243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
           LFK+K+EA M EARSQQAASLTEF WLG+RFP+SN K+RV+ILKAQELEK+L    A+SL
Sbjct: 244 LFKAKIEAAMEEARSQQAASLTEFSWLGYRFPVSNPKSRVSILKAQELEKELQSPTAESL 303

Query: 303 PAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQ 362
           PAEKKL IFDK+FTAYH+AR  IRSDL SAGNAE+VKDDL GLDKAV AVLGQRTIERNQ
Sbjct: 304 PAEKKLTIFDKLFTAYHDARNTIRSDLVSAGNAESVKDDLNGLDKAVGAVLGQRTIERNQ 363

Query: 363 LLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAE 422
           LLV + K KL ++RDDK  KVT+PEELVRLYDLLLQN ADLSDL+SSGR+RKPEE+ F E
Sbjct: 364 LLVKVAKSKLNRKRDDKNDKVTRPEELVRLYDLLLQNVADLSDLISSGRDRKPEEIAFEE 423

Query: 423 ECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIE 482
           EC+  SLAFRAERCFYLA+SYSLAGKR EA+ALY RARS AE+AL  FQ +A  D+  I+
Sbjct: 424 ECQRTSLAFRAERCFYLAKSYSLAGKRAEAFALYSRARSLAEDALNKFQSIAKKDEGTIQ 483

Query: 483 ELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQV-DKFLLEKLD 541
           ELKTL KECR+NSCIEHA GIM EE+A ENLSN++ST+S++ T     QV +K+LL+KLD
Sbjct: 484 ELKTLIKECRANSCIEHATGIMEEERAPENLSNRMSTISLNNTAA---QVEEKYLLDKLD 540

Query: 542 VYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGF--- 598
           VYESAVGDSN K A +IE FPPA QSI RNPIVLDLAYN IDFP +ENRMKK + GF   
Sbjct: 541 VYESAVGDSNTKTAPKIERFPPALQSIPRNPIVLDLAYNCIDFPVIENRMKK-KGGFFSS 599

Query: 599 -ISRLW 603
            IS LW
Sbjct: 600 RISSLW 605

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	604
TAIR|locus:2156181	605	AT5G61970 [Arabidopsis thalian	0.988	0.986	0.759	4.6e-240
UNIPROTKB|A6QQW3	623	SRP68 "Uncharacterized protein	0.907	0.879	0.331	1.9e-74
UNIPROTKB|Q9UHB9	627	SRP68 "Signal recognition part	0.940	0.905	0.322	2.8e-73
MGI|MGI:1917447	625	Srp68 "signal recognition part	0.940	0.908	0.323	7.5e-73
UNIPROTKB|F1RW08	624	SRP68 "Uncharacterized protein	0.940	0.910	0.320	1.8e-71
UNIPROTKB|F1P0P4	602	SRP68 "Uncharacterized protein	0.908	0.911	0.320	6.1e-71
UNIPROTKB|G3V1U4	589	SRP68 "Signal recognition part	0.794	0.814	0.322	2.9e-68
ZFIN|ZDB-GENE-040831-3	617	srp68 "signal recognition part	0.942	0.922	0.301	3.5e-68
RGD|1305376	587	Srp68 "signal recognition part	0.794	0.817	0.323	2.6e-67
UNIPROTKB|F1PI42	618	SRP68 "Signal recognition part	0.778	0.760	0.338	1.3e-66

TAIR|locus:2156181 AT5G61970 [Arabidopsis thaliana (taxid:3702)]

 Score = 2314 (819.6 bits), Expect = 4.6e-240, P = 4.6e-240
 Identities = 460/606 (75%), Positives = 514/606 (84%)

Query:     3 KNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXX 62
             K SE SAMEIDD KS +SDQI P+FSINVLQL+KS+Q QHGLRHGD              
Sbjct:     4 KQSEISAMEIDDPKSESSDQILPRFSINVLQLMKSSQAQHGLRHGDYARYRRYCSARLRR 63

Query:    63 XXKSLKFTHGRGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRI 122
               KSLKFTHGRGKYTR+AI ESTVT+VRFLH+V Y AERAWSHAMEKRQLPDGPNARQRI
Sbjct:    64 LYKSLKFTHGRGKYTRRAILESTVTDVRFLHVVFYMAERAWSHAMEKRQLPDGPNARQRI 123

Query:   123 YLIGRLRKAVKWATLFSNLCAIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
             YL+GRLRKAVKWA+LFS+LC+IK D RTSLEAEAYASYMKG LLFEQDQNWET L  FK+
Sbjct:   124 YLVGRLRKAVKWASLFSSLCSIKTDSRTSLEAEAYASYMKGTLLFEQDQNWETGLACFKN 183

Query:   183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
             ARAVYEELGKYGD+ENQVLCRERVEELEPSIRYCLHKIG+SN++TSELLQIGEMEGPALD
Sbjct:   184 ARAVYEELGKYGDLENQVLCRERVEELEPSIRYCLHKIGKSNLQTSELLQIGEMEGPALD 243

Query:   243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
             LFK+K+EA M EARSQQAASLTEF WLG+RFP+SN K+RV+ILKAQELEK+L    A+SL
Sbjct:   244 LFKAKIEAAMEEARSQQAASLTEFSWLGYRFPVSNPKSRVSILKAQELEKELQSPTAESL 303

Query:   303 PAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQ 362
             PAEKKL IFDK+FTAYH+AR  IRSDL SAGNAE+VKDDL GLDKAV AVLGQRTIERNQ
Sbjct:   304 PAEKKLTIFDKLFTAYHDARNTIRSDLVSAGNAESVKDDLNGLDKAVGAVLGQRTIERNQ 363

Query:   363 LLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAE 422
             LLV + K KL ++RDDK  KVT+PEELVRLYDLLLQN ADLSDL+SSGR+RKPEE+ F E
Sbjct:   364 LLVKVAKSKLNRKRDDKNDKVTRPEELVRLYDLLLQNVADLSDLISSGRDRKPEEIAFEE 423

Query:   423 ECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIE 482
             EC+  SLAFRAERCFYLA+SYSLAGKR EA+ALY RARS AE+AL  FQ +A  D+  I+
Sbjct:   424 ECQRTSLAFRAERCFYLAKSYSLAGKRAEAFALYSRARSLAEDALNKFQSIAKKDEGTIQ 483

Query:   483 ELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVD-KFLLEKLD 541
             ELKTL KECR+NSCIEHA GIM EE+A ENLSN++ST+S++ T     QV+ K+LL+KLD
Sbjct:   484 ELKTLIKECRANSCIEHATGIMEEERAPENLSNRMSTISLNNTAA---QVEEKYLLDKLD 540

Query:   542 VYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRKGF--- 598
             VYESAVGDSN K A +IE FPPA QSI RNPIVLDLAYN IDFP +ENRMKK + GF   
Sbjct:   541 VYESAVGDSNTKTAPKIERFPPALQSIPRNPIVLDLAYNCIDFPVIENRMKK-KGGFFSS 599

Query:   599 -ISRLW 603
              IS LW
Sbjct:   600 RISSLW 605

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|A6QQW3 SRP68 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 194/586 (33%), Positives = 313/586 (53%)

Query:    22 QIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTRKA 80
             + G   S+ +LQ++K +Q QHGLRHGD                K+L F  G R K+T K 
Sbjct:    50 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 109

Query:    81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
             +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct:   110 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELER 168

Query:   141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
             LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct:   169 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 227

Query:   200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
             VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct:   228 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 286

Query:   260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
             AA+++E  W G   P+   K R+ +L   + E    +  A+S   +++L  F+ + +   
Sbjct:   287 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAA--IAQAESEETKERL--FESMLSECR 342

Query:   320 EARGCIRSDLAS-------AGNAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVS-IVKG 370
             +A   +R +L S       A + E+ K  +L  L   ++ +     I+RN+ +   + K 
Sbjct:   343 DAIQAVREELKSDQKQRDYALDVESGKVSNLQYLHSYLTYIKLSTAIKRNENMAKGLQKA 402

Query:   371 KLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLA 430
              L +Q +D + +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L 
Sbjct:   403 LLQQQPEDDSKRAPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLKTLV 457

Query:   431 FRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKE 490
             ++A RCF++A+SY L  K  EA  LY R   +A+    D     NS + +  +++ L  +
Sbjct:   458 YKAYRCFFIAQSYVLVKKWNEALVLYDRVLKYADEVNSDAGAFKNSLKDL-PDVQELITQ 516

Query:   491 CRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDS 550
              RS  C   A  I+       N +++  T S         + +K L+E+ + +   +  S
Sbjct:   517 VRSEKCSLQAAAIL-----DTNDAHQTETSS-------QVKDNKPLVERFETF--CLDPS 562

Query:   551 NVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 596
              V   A +  FPP FQ I   P+  DLA N + FP LE+++++  K
Sbjct:   563 LVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKAK 608

GO:0042493 "response to drug" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

UNIPROTKB|Q9UHB9 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
 Identities = 196/607 (32%), Positives = 311/607 (51%)

Query:     2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXX 61
             A   E    E     S  + + G   S+ +LQ++K +Q QHGLRHGD             
Sbjct:    33 AGGEENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQR 92

Query:    62 XXXKSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
                K+L F  G R K+T K +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+
Sbjct:    93 RLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRK 151

Query:   121 RIYLIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
             R +L+ RLRKAVK A     LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ 
Sbjct:   152 RFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEA 210

Query:   180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
             F   + +YE+L      E  VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G 
Sbjct:   211 FNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGG 269

Query:   240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
                L   KLEA++ + R++QAA+++E  W G   P+   K R+ +L   + E  + V+A 
Sbjct:   270 TEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAE 328

Query:   300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLAS---------AGNAENVKDDLFGLDKAVS 350
                  E K  +F+ + +   +A   +R +L            G    V + L  L   ++
Sbjct:   329 SE---ETKERLFESMLSECRDAIQVVREELKPDQKQRDYILEGEPGKVSN-LQYLHSYLT 384

Query:   351 AVLGQRTIERNQLLVS-IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSS 409
              +     I+RN+ +   + +  L +Q +D + +  +P++L+RLYD++LQN  +L  L   
Sbjct:   385 YIKLSTAIKRNENMAKGLQRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--P 442

Query:   410 GRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKD 469
             G E   E+  F +E  LK+L F+A RCF++A+SY L  K +EA  LY R   +A     D
Sbjct:   443 GLE---EDKAFQKEIGLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSD 499

Query:   470 FQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKS 529
                  NS + +  +++ L  + RS  C   A  I+    A +           + T    
Sbjct:   500 AGAFKNSLKDL-PDVQELITQVRSEKCSLQAAAILDANDAHQ-----------TETSSSQ 547

Query:   530 FQVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLEN 589
              + +K L+E+ + +   +  S V   A +  FPP FQ I   P+  DLA N + FP LE+
Sbjct:   548 VKDNKPLVERFETF--CLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLED 605

Query:   590 RMKKDRK 596
             ++++  K
Sbjct:   606 KLEQKTK 612

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IDA

GO:0042493 "response to drug" evidence=IDA

GO:0005047 "signal recognition particle binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0005840 "ribosome" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1917447 Srp68 "signal recognition particle 68" [Mus musculus (taxid:10090)]

 Score = 736 (264.1 bits), Expect = 7.5e-73, P = 7.5e-73
 Identities = 196/606 (32%), Positives = 315/606 (51%)

Query:     2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXX 61
             A   E    E     S  + + G   S+ +LQ++K +Q QHGLRHGD             
Sbjct:    32 AGGDENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQR 91

Query:    62 XXXKSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
                K+L F  G R K+T K +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+
Sbjct:    92 RLRKTLNFKMGNRHKFTGKKVTEELLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRK 150

Query:   121 RIYLIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
             R +L+ RLRKAVK A     LC + + D +T LEA+AY +Y+ G L FE  Q W++A++ 
Sbjct:   151 RFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKSAIEA 209

Query:   180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
             F   + +YE+L      E  VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G 
Sbjct:   210 FNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGG 268

Query:   240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
                L   KLEA++ + R++QAA+++E  W G   P+   K R+ +L   + E  + V+A 
Sbjct:   269 TEGLLAEKLEALITQTRAKQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAE 327

Query:   300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLAS-------AGNAENVK-DDLFGLDKAVSA 351
                  E K  +F+ + +   +A   +R +L         A + E+ K  +L  L   ++ 
Sbjct:   328 SE---ETKERLFESMLSECRDALQAVREELKPDQKQRDYALDGESGKVSNLQYLHSYLTY 384

Query:   352 VLGQRTIERNQLLVS-IVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSG 410
             +     I RN+ +   + +  L +Q +D + +  +P++L+RLYD++LQN  +L  L   G
Sbjct:   385 IKLSTAIRRNENMAKGLHRALLQQQPEDDSKRSPRPQDLIRLYDIILQNLVELLQL--PG 442

Query:   411 RERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDF 470
              E   E+  F +E  LK+L F+A RCF++A+SY L  K +EA  LY R   +A N +   
Sbjct:   443 LE---EDRTFQKEISLKTLVFKAYRCFFIAQSYVLVKKWSEALVLYDRVLKYA-NEVSSH 498

Query:   471 QRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSF 530
                + +    + +++ L  + RS  C   A  I+       N S++  T S         
Sbjct:   499 GGASKNSLKDLPDVQELITQVRSEKCSLQAAAIL-----DANDSHQTDTSS-------QV 546

Query:   531 QVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENR 590
             + +  L+E+ + +   +  S V   A +  FPP FQ I   P+  DLA N + FP LE++
Sbjct:   547 KDNTPLVERFESF--CLDPSLVTKQANLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDK 604

Query:   591 MKKDRK 596
             +++  K
Sbjct:   605 LEQKTK 610

GO:0003723 "RNA binding" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

UNIPROTKB|F1RW08 SRP68 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
 Identities = 195/608 (32%), Positives = 316/608 (51%)

Query:     2 AKNSETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXX 61
             A   E    E     S  + + G   S+ +LQ++K +Q QHGLRHGD             
Sbjct:    29 AGGEENKENERPSAGSKANKEFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQR 88

Query:    62 XXXKSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQ 120
                K+L F  G R K+T K +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+
Sbjct:    89 RLRKTLNFKMGNRHKFTGKKVTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRK 147

Query:   121 RIYLIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKN 179
             R +L+ RLRKAVK A     LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ 
Sbjct:   148 RFHLLSRLRKAVKHAEELERLCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEA 206

Query:   180 FKSARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGP 239
             F   + +YE+L      E  VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G 
Sbjct:   207 FNKCKTIYEKLASAFTEEQAVLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGG 265

Query:   240 ALDLFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAA 299
                L   KLEA++ + R++QAA+++E  W G   P+   + R+ +L   + E    +  A
Sbjct:   266 TEGLLAEKLEALITQTRAKQAATMSEVEWRGRAVPVKVDRVRIFLLGLADNEAA--IAQA 323

Query:   300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAG-------NAENVK-DDLFGLDKAVSA 351
             +S   +++L  F+ + +   +A   +R +L           + E+ K  +L  L   ++ 
Sbjct:   324 ESEETKERL--FESMLSECRDAIQAVREELKPDQKQRDYPLDGESGKVSNLQYLHSYLTY 381

Query:   352 VLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVT-KPEELVRLYDLLLQNTADLSDLVSSG 410
             +     I+RN+ +   ++  L +Q+ +  GK + +P++L+RLYD++LQN  +L  L   G
Sbjct:   382 IKLSTAIKRNENMARGLQKALLQQQPEDDGKRSPRPQDLIRLYDIILQNLVELLQL--PG 439

Query:   411 RERKPEEVKFAEECELKSLAFRAE--RCFYLARSYSLAGKRTEAYALYCRARSHAENALK 468
              E   E+  F +E  LK+L ++A   RCF++A+SY L  K +EA  LY R   +A+    
Sbjct:   440 LE---EDRAFQKEIGLKTLVYKAYSVRCFFIAQSYVLVKKWSEALVLYDRVLKYADEVNS 496

Query:   469 DFQRMANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKK 528
             D     NS + + + L+ L  + RS  C   A  I+       N   +  T S       
Sbjct:   497 DAGAFKNSLKDLPDVLE-LISQVRSEKCCLQAAAIL-----DTNDPQQTETSS------- 543

Query:   529 SFQVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLE 588
               + +K L+E+ + +   +  S V   A +  FPP FQ +   P+  DLA N + FP LE
Sbjct:   544 QVKDNKPLVERFETF--CLDPSLVTKQANLVHFPPGFQPVPCKPLFFDLALNHVAFPPLE 601

Query:   589 NRMKKDRK 596
             +++++  K
Sbjct:   602 DKLEQKTK 609

GO:0042493 "response to drug" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

UNIPROTKB|F1P0P4 SRP68 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
 Identities = 189/590 (32%), Positives = 312/590 (52%)

Query:    20 SDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTR 78
             +D +     + +LQ++K +Q QHGLRHGD                K+L F  G R K+T 
Sbjct:    26 ADGLSDSLGLEILQIVKESQQQHGLRHGDFQRYRGYCSRRLRRLRKTLNFKMGNRHKFTG 85

Query:    79 KAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLF 138
             K +TE  +++ R+L L+L  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A   
Sbjct:    86 KKVTEEILSDNRYLLLILMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEEL 144

Query:   139 SNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVE 197
               LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E
Sbjct:   145 ERLCESNRVDAKTKLEAQAYMAYLTGMLRFEH-QEWKAAMEAFNKCKTIYEKLANAFTEE 203

Query:   198 NQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARS 257
               VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R+
Sbjct:   204 QAVLYNQRVEEISPNIRYCAYNIGDQSAM-NELMQMRLRSGGTEGLLAEKLEALITQTRA 262

Query:   258 QQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTA 317
             +QAA+++E  W G   P+   K R+ +L   + E  + V+A +    E+   +F+ + + 
Sbjct:   263 KQAATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAAI-VQAENEETRER---LFESLLSE 318

Query:   318 YHEARGCIRSDL---------ASAGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLV-SI 367
               +A   +R DL         +  G++  V +  + L   ++ +     I+RN+ +  S+
Sbjct:   319 CRDAIQAVREDLKPDQKQREHSLEGDSGKVSNIQY-LHSYLTYIKLSTAIKRNESMAKSL 377

Query:   368 VKGKLTKQRDDKTGKVT-KPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECEL 426
              K  L +QR ++ GK T +P++L+RLYD++LQN  +L+ L   G E   E+  F +E  L
Sbjct:   378 QKALLQQQRSEEDGKRTPRPQDLIRLYDIILQNLVELTQL--PGLE---EDKSFQKEIGL 432

Query:   427 KSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKT 486
             K+L ++A RCF++A+SY L  K +EA  LY R   +A           NS + +  +++ 
Sbjct:   433 KTLVYKAYRCFFIAQSYVLVKKWSEALVLYERVLKYAGEVQSGAGAFTNSLKEL-PDVQD 491

Query:   487 LCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESA 546
             L  +  +      A  I+    A++N  ++  + S    GK        L E+ + +   
Sbjct:   492 LITQVNAEKYSLQAAAIL---DANDN--HETESPSQVKDGKP-------LSERFETF--C 537

Query:   547 VGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 596
             +  S V     +  FPP FQ I   P+  DLA N + FP LE+++++  K
Sbjct:   538 LDPSLVSKQVSLVHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKVEQKAK 587

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

UNIPROTKB|G3V1U4 SRP68 "Signal recognition particle 68 kDa protein" [Homo sapiens (taxid:9606)]

 Score = 622 (224.0 bits), Expect = 2.9e-68, Sum P(2) = 2.9e-68
 Identities = 167/518 (32%), Positives = 270/518 (52%)

Query:    90 RFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLC-AIKADP 148
             R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     LC + + D 
Sbjct:    84 RYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELERLCESNRVDA 142

Query:   149 RTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEE 208
             +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  VL  +RVEE
Sbjct:   143 KTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQAVLYNQRVEE 201

Query:   209 LEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHW 268
             + P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++QAA+++E  W
Sbjct:   202 ISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEW 260

Query:   269 LGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSD 328
              G   P+   K R+ +L   + E  + V+A      E K  +F+ + +   +A   +R +
Sbjct:   261 RGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECRDAIQVVREE 316

Query:   329 LAS---------AGNAENVKDDLFGLDKAVSAVLGQRTIERNQLLVS-IVKGKLTKQRDD 378
             L            G    V + L  L   ++ +     I+RN+ +   + +  L +Q +D
Sbjct:   317 LKPDQKQRDYILEGEPGKVSN-LQYLHSYLTYIKLSTAIKRNENMAKGLQRALLQQQPED 375

Query:   379 KTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFY 438
              + +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L F+A RCF+
Sbjct:   376 DSKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDKAFQKEIGLKTLVFKAYRCFF 430

Query:   439 LARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIE 498
             +A+SY L  K +EA  LY R   +A     D     NS + +  +++ L  + RS  C  
Sbjct:   431 IAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFKNSLKDL-PDVQELITQVRSEKCSL 489

Query:   499 HAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARI 558
              A  I+    A +           + T     + +K L+E+ + +   +  S V   A +
Sbjct:   490 QAAAILDANDAHQ-----------TETSSSQVKDNKPLVERFETF--CLDPSLVTKQANL 536

Query:   559 EAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 596
               FPP FQ I   P+  DLA N + FP LE+++++  K
Sbjct:   537 VHFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 574

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-040831-3 srp68 "signal recognition particle 68" [Danio rerio (taxid:7955)]

 Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
 Identities = 183/607 (30%), Positives = 316/607 (52%)

Query:     5 SETSAMEIDDKKSINSDQIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXX 64
             +E + +++   +    + I     + +LQ++K +Q QHGLRHGD                
Sbjct:    27 AEQNGVKMPSTEENKENSIDQSIGLEILQIIKDSQQQHGLRHGDYQRYRGYCSRRLRRLR 86

Query:    65 KSLKFTHG-RGKYTRKAITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIY 123
             K+L F  G R K+T K +T   +++ R+L LVL  AERAWS+AM+ +Q  +    R+R +
Sbjct:    87 KALGFKMGNRHKFTGKKVTVEMLSDNRYLLLVLMEAERAWSYAMQLKQEAN-TEPRKRFH 145

Query:   124 LIGRLRKAVKWATLFSNLC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKS 182
             L+GRLRKA K       LC +   D +T LEA+AY +Y+ G + FE  Q W++A++ F +
Sbjct:   146 LLGRLRKAAKHGDQLEKLCESPNVDAKTKLEAQAYTAYLTGMVQFEL-QEWKSAMEAFNN 204

Query:   183 ARAVYEELGKYGDVENQVLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALD 242
              + +YE+L      E  VL  +RVEE+ P+IRYC + IG+ N   ++L+Q+    G    
Sbjct:   205 CKTIYEKLASAFTEEQAVLYHQRVEEISPNIRYCAYNIGDQNA-INDLMQMRLSAGGGGG 263

Query:   243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSL 302
             +   KLE+++ + R++QAA ++E  W G   PI   K R+ +L   + E    +  AD+ 
Sbjct:   264 MMAEKLESLITQTRAKQAAVMSEVEWRGRTVPIKIDKARIFLLGLADNEAA--ITQADN- 320

Query:   303 PAEKKLVIFDKIFTAYHEA----RGCIRSDLASAGNAENVKD-----DLFGLDKAVSAVL 353
               E K  +++ +     +     R  +R+D+     A +V +     +L  L   ++ + 
Sbjct:   321 -EETKEHLYESLLAECRDTIQAVREELRTDVKQRERATDVAESSKVSNLQYLHSYLTYIK 379

Query:   354 GQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRER 413
                 ++RN+ +   ++ KL + + D+  +  +P++L+RLYD++LQ+ A+LS L   G E 
Sbjct:   380 LWTVVKRNESMAHSLQTKLKEPQTDENKRGPRPQDLIRLYDIILQSLAELSSL--QGLE- 436

Query:   414 KPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRM 473
               E+  F +E  LK+L ++A RCFY+A+SY L  K +EA  LY R   + +      + +
Sbjct:   437 --EDHTFQKELSLKTLVYKAYRCFYIAQSYVLVKKWSEALVLYERVLKYTKEVQSKAKSL 494

Query:   474 ANSDQMMIEELKTLCKECRSNSCIEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVD 533
             +N+ + +  +++ L  E  +      A  I+  E  +E  S +     I  T   S ++D
Sbjct:   495 SNNLKDL-PDVQELIAEVNAEKYSLQAAAILDTEDIAELPSQQ----QIKDTTPLSDRLD 549

Query:   534 KFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKK 593
              F   +LD        + +     +  FPP FQ I   P+  DLA N +  P L++++++
Sbjct:   550 NF---RLD-------SNLLSKQPNLVQFPPDFQPIPCKPLFFDLALNHVVLPPLDDKVEQ 599

Query:   594 DRKGFIS 600
               KG I+
Sbjct:   600 KGKGGIA 606

GO:0005047 "signal recognition particle binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

RGD|1305376 Srp68 "signal recognition particle 68" [Rattus norvegicus (taxid:10116)]

 Score = 614 (221.2 bits), Expect = 2.6e-67, Sum P(2) = 2.6e-67
 Identities = 167/517 (32%), Positives = 271/517 (52%)

Query:    90 RFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLC-AIKADP 148
             R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     LC + + D 
Sbjct:    83 RYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELERLCESSRVDA 141

Query:   149 RTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLCRERVEE 208
             +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  VL  +RVEE
Sbjct:   142 KTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNRCKTIYEKLASAFTEEQAVLYNQRVEE 200

Query:   209 LEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQAASLTEFHW 268
             + P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++QAA+++E  W
Sbjct:   201 ISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQAATMSEVEW 259

Query:   269 LGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSD 328
              G   P+   K R+ +L   + E  + V+A      E K  +F+ + +   +A   +R +
Sbjct:   260 RGRTVPVKIDKVRIFLLGLADNEAAI-VQAESE---ETKERLFESMLSECRDALQAVREE 315

Query:   329 LAS-------AGNAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVS-IVKGKLTKQRDDK 379
             L           + E+ K  +L  L   ++ +     I RN+ +   + +  L +Q +D 
Sbjct:   316 LKPDQKQRDYTVDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLHRALLQQQPEDD 375

Query:   380 TGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYL 439
             + +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L F+A RCF++
Sbjct:   376 SKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRTFQKEIGLKTLVFKAYRCFFI 430

Query:   440 ARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSCIEH 499
             A+SY L  K +EA  LY R   +A           NS + +  +++ L  + RS  C   
Sbjct:   431 AQSYVLVKKWSEALVLYDRVLKYASEVSSHGGAFKNSLKDL-PDVQELITQVRSEKCSLQ 489

Query:   500 AKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIE 559
             A  I+       N S++  T S         + +  L+E+ + +   +  S V   A + 
Sbjct:   490 AAAIL-----DANESHQTDTAS-------QVKDNTPLVERFETF--CLDPSLVTKQASLV 535

Query:   560 AFPPAFQSIARNPIVLDLAYNFIDFPSLENRMKKDRK 596
              FPP FQ I   P+  DLA N + FP LE+++++  K
Sbjct:   536 HFPPGFQPIPCKPLFFDLALNHVAFPPLEDKLEQKTK 572

GO:0005047 "signal recognition particle binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA;ISO

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0042493 "response to drug" evidence=ISO

UNIPROTKB|F1PI42 SRP68 "Signal recognition particle 68 kDa protein" [Canis lupus familiaris (taxid:9615)]

 Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
 Identities = 167/493 (33%), Positives = 268/493 (54%)

Query:    22 QIGPKFSINVLQLLKSAQMQHGLRHGDXXXXXXXXXXXXXXXXKSLKFTHG-RGKYTRKA 80
             + G   S+ +LQ++K +Q QHGLRHGD                K+L F  G R K+T K 
Sbjct:    46 EFGDSLSLEILQIIKESQQQHGLRHGDFQRYRGYCSRRQRRLRKTLNFKMGNRHKFTGKK 105

Query:    81 ITESTVTEVRFLHLVLYTAERAWSHAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSN 140
             +TE  +T+ R+L LVL  AERAWS+AM+ +Q  +    R+R +L+ RLRKAVK A     
Sbjct:   106 VTEDLLTDNRYLLLVLMDAERAWSYAMQLKQEAN-TEPRKRFHLLSRLRKAVKHAEELER 164

Query:   141 LC-AIKADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQ 199
             LC + + D +T LEA+AY +Y+ G L FE  Q W+ A++ F   + +YE+L      E  
Sbjct:   165 LCESNRVDAKTKLEAQAYTAYLSGMLRFEH-QEWKAAIEAFNKCKTIYEKLASAFTEEQA 223

Query:   200 VLCRERVEELEPSIRYCLHKIGESNVKTSELLQIGEMEGPALDLFKSKLEAVMAEARSQQ 259
             VL  +RVEE+ P+IRYC + IG+ +   +EL+Q+    G    L   KLEA++ + R++Q
Sbjct:   224 VLYNQRVEEISPNIRYCAYNIGDQSA-INELMQMRLRSGGTEGLLAEKLEALITQTRAKQ 282

Query:   260 AASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYH 319
             AA+++E  W G   P+   K R+ +L   + E    +  A+S   +++L  F+ + +   
Sbjct:   283 AATMSEVEWRGRTVPVKIDKVRIFLLGLADNEAA--IAQAESEETKERL--FESMLSECR 338

Query:   320 EARGCIRSDLASAG-------NAENVK-DDLFGLDKAVSAVLGQRTIERNQLLVSIVKGK 371
             +A   +R +L           + E+ K  +L  L   ++ +     I RN+ +   ++  
Sbjct:   339 DAIQAVREELKPDQKQRDYTLDGESGKVSNLQYLHSYLTYIKLSTAIRRNENMAKGLQKA 398

Query:   372 LTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAF 431
             L +Q +D++ +  +P++L+RLYD++LQN  +L  L   G E   E+  F +E  LK+L F
Sbjct:   399 LQQQPEDESKRSPRPQDLIRLYDIILQNLVELLQL--PGLE---EDRAFQKEIGLKTLVF 453

Query:   432 RAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKEC 491
             +A RCF++A+SY L  K +EA  LY R   +A     D     NS + +  +++ L  + 
Sbjct:   454 KAYRCFFIAQSYVLVKKWSEALVLYDRVLKYANEVNSDAGAFRNSLKDL-PDVQELITQV 512

Query:   492 RSNSCIEHAKGIM 504
             RS  C   A  I+
Sbjct:   513 RSEKCSLQAAAIL 525

GO:0030942 "endoplasmic reticulum signal peptide binding" evidence=IEA

GO:0008312 "7S RNA binding" evidence=IEA

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=IEA

GO:0005786 "signal recognition particle, endoplasmic reticulum targeting" evidence=IEA

GO:0005047 "signal recognition particle binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VSS2	SRP68_DROME	No assigned EC number	0.3161	0.8874	0.8874	yes	no
Q00004	SRP68_CANFA	No assigned EC number	0.3388	0.9089	0.8826	yes	no
Q9UHB9	SRP68_HUMAN	No assigned EC number	0.3361	0.9139	0.8803	yes	no
Q8BMA6	SRP68_MOUSE	No assigned EC number	0.3393	0.9023	0.872	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_XV0330 hypothetical protein (602 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	604
KOG2460	593	consensus Signal recognition particle, subunit Srp	100.0
cd09034	345	BRO1_Alix_like Protein-interacting Bro1-like domai	88.61
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	87.86
PF03097	377	BRO1: BRO1-like domain; InterPro: IPR004328 The BR	87.82
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	86.53
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.8
cd09239	361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	82.86
cd09242	348	BRO1_ScBro1_like Protein-interacting, N-terminal,	82.74
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	82.06
cd09247	346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	81.63
cd09241	355	BRO1_ScRim20-like Protein-interacting, N-terminal,	80.24

>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.1e-114  Score=905.38  Aligned_cols=551  Identities=32%  Similarity=0.501  Sum_probs=473.8

Q ss_pred             cchhHHHHHHHHHHHhCcCcchhHHHHHHHHHHHHHHHhhcCCccC-CCCcccccCCccccc--chhhHHHHHHHHHHHH
Q 007413           27 FSINVLQLLKSAQMQHGLRHGDYTRYRRYCTARLRRLYKSLKFTHG-RGKYTRKAITESTVT--EVRFLHLVLYTAERAW  103 (604)
Q Consensus        27 ~sl~vl~~i~~~q~qhGLrh~Dy~RYr~ycsrRL~rLRk~L~~t~g-~~Ky~~k~it~e~v~--d~r~l~llLl~AERaW  103 (604)
                      -++.||++++++|+|||||||||+|||+||++|++|+||.++|+.| .+||..+.||-...+  |.+||.+|++++||+|
T Consensus        18 ~t~~iL~~~kd~qqqHgLrhGd~qryR~yC~~~l~r~rKal~f~~gn~~k~~s~~v~~~~~~~~~~q~l~~~~~e~era~   97 (593)
T KOG2460|consen   18 RTLEILQTIKDAQQQHGLRHGDFQRYRGYCSRRLRRLRKALKFKNGNYGKFKSKDVTNKLKTLHDIQFLILPLAEAERAY   97 (593)
T ss_pred             chHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchhhhhhhhhhhHhhhhhhhhhhhhhhhHHHHH
Confidence            4899999999999999999999999999999999999999999888 788988888765444  9999999999999999


Q ss_pred             HHHHH-hccCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhh--cCChhhHHHHHHHHHHHHHHHHhhchhhHHHHHHHH
Q 007413          104 SHAME-KRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAI--KADPRTSLEAEAYASYMKGNLLFEQDQNWETALKNF  180 (604)
Q Consensus       104 Ayam~-lk~~~~~~~~r~R~h~~~RLkKA~~~A~~L~~l~~~--~~d~~t~lEa~aY~a~i~G~~~~E~~~~w~~al~~~  180 (604)
                      ||||+ .+| +.++.||+|+|+++||||||+||.+|+++|++  +.|++|+|||+||++||+|.+.||++ +|+.|++.|
T Consensus        98 Aeam~~~~Q-e~n~e~rkrfhll~rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m~G~lnfE~r-~Wk~a~ea~  175 (593)
T KOG2460|consen   98 AEAMQLAKQ-EGNTESRKRFHLLNRLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYMEGMLNFERR-KWKDAAEAF  175 (593)
T ss_pred             HHHHHHHHH-hcCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHhhhhhhHH-hHHhHHHHH
Confidence            99999 676 67888999999999999999999999999986  47999999999999999999999999 999999999


Q ss_pred             HHHHHHHHHHhcCCC-hhhHHHHHHHHHhhhhhHHHHhhccCCCCC--CchHHHhhhhhcCCchhHHHHHHHHHHH-HHH
Q 007413          181 KSARAVYEELGKYGD-VENQVLCRERVEELEPSIRYCLHKIGESNV--KTSELLQIGEMEGPALDLFKSKLEAVMA-EAR  256 (604)
Q Consensus       181 s~ar~iy~~L~~~~~-~~~~~l~~~~~e~idp~lRycay~l~~~~~--~~~dl~~~~~~~~~~~~~l~~~l~~~~~-~~~  256 (604)
                      +.|+.+|+.|+.+.+ ++++.+|+.++.+|+|+|||||||++.+..  ...++|+++.+.+.+.-.+...++..+. .+.
T Consensus       176 ~~~klvye~L~~a~~~e~~~~v~~~~vneiqpnLRycA~Ni~~~~~~~~i~Elmq~r~~~dee~~~~~~svd~lis~~t~  255 (593)
T KOG2460|consen  176 NNAKLVYEKLAHAKNLELEESVYDNRVNEIQPNLRYCAYNIIGPESNGFIDELMQSREQKDEELVKLLESVDFLISIQTS  255 (593)
T ss_pred             HHHHHHHHHHHhhcCchhHHHHHHHHHHhcChhHHHHhhhccCccccchHHHHHHhhccCCchhhhhhhccchhhhcchh
Confidence            999999999999987 678899999999999999999999976654  4688888875543333345556667777 445


Q ss_pred             HHhhccccEEEEcccccccCCHHHHHHHHHHHHHHHHHhHhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 007413          257 SQQAASLTEFHWLGHRFPISNAKTRVAILKAQELEKDLHVKAADSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAE  336 (604)
Q Consensus       257 ~~~~~~~~~I~Wr~~~~~i~~~~v~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~yd~~l~~~~dA~~~~k~~i~~~~~~~  336 (604)
                      +++.+.+++|+|||++|+|.+++|+++|..+++.+..|.+++    +.+.+++.++++++.|.||++.+++.+.-.....
T Consensus       256 tes~~~~t~IeWRg~kvkV~~~kV~~fL~~~~d~~~~l~q~~----t~~~K~~llEkala~~edaI~~v~D~~~~d~~~~  331 (593)
T KOG2460|consen  256 TESSATTTTIEWRGRKVKVIDEKVRQFLLQGLDIEPALAQIT----TYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQR  331 (593)
T ss_pred             hhhhcceeEEEecCcccccccHHHHHHHHHHHhhcHHhccCC----CHhHHHHHHHHHHHHHHHHHHHHhhhcccchHhh
Confidence            556678999999999999999999999999999988776543    4689999999999999999999999986332211


Q ss_pred             CchhhhhhHHHHHHHHHHHHHHHhhHHHHHHHHhhhcccccccCCCCCChhhHHHHHHHHHHHHHHHhcccCCCCCCChh
Q 007413          337 NVKDDLFGLDKAVSAVLGQRTIERNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLLLQNTADLSDLVSSGRERKPE  416 (604)
Q Consensus       337 ~~~~el~~l~~yi~~~~l~~tIeRn~~Li~~l~~~~~~~~~~~~~k~~k~~e~vrLyd~ilq~l~ei~eLpgv~~~~~~~  416 (604)
                      +..-..|.+++|+.|+++.+||.||..++..++..|.....+.++|+ +|+|+.||||+|+||+.||+||||+++     
T Consensus       332 ~~t~~~q~i~aYL~Y~~l~~tisR~~~~~~n~~~~~ls~~~~~~~k~-rpqdl~RLYd~iiknl~e~~elPG~~~-----  405 (593)
T KOG2460|consen  332 NSTLNGQIILAYLKYNKLLTTISRNEDAFTNLWNQWLSQQTSDPKKL-RPQDLERLYDSIIKNLSEIMELPGLES-----  405 (593)
T ss_pred             hhhhcchHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHhCccccccc-CHHHHHHHHHHHHHHHHHHHhCCCccc-----
Confidence            11123667899999999999999999999999998877654555566 999999999999999999999999764     


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhcCCcHHHHHHHHHHHHHhhccch
Q 007413          417 EVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQRMANSDQMMIEELKTLCKECRSNSC  496 (604)
Q Consensus       417 d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~~~~~~~~~~~~~~~~~l~~L~~~i~~~~~  496 (604)
                      |..|..+++++..||+|+||||||.+|+..+||+||+|||+||..+++++.+.+..+.+.+.+  ..+.+++.++++.++
T Consensus       406 D~~l~sqle~~~~~fkafRC~~iA~sY~a~~K~~EAlALy~Ra~sylqe~~~~l~s~~e~l~~--~~~~eli~el~k~k~  483 (593)
T KOG2460|consen  406 DKELQSQLELKKLYFKAFRCFYIAVSYQAKKKYSEALALYVRAYSYLQEVNSELESFKESLLP--LLLLELISELQKRKE  483 (593)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhcccc--hHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999887766544332  456678888898899


Q ss_pred             hHHHhhhhhhhhhhhhcccccccccccCCCCcccccchhhhhhhhhcccccCCCCCCCCCccccCCCCcccccCCchhhh
Q 007413          497 IEHAKGIMVEEKASENLSNKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIEAFPPAFQSIARNPIVLD  576 (604)
Q Consensus       497 ~~~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lie~ld~~~~~~~~~~~~~~~nl~~~pP~~~pvp~KPlfFD  576 (604)
                      .++|.+++.+.-..    .+       ....++++.+.||+|+||.|.  .+.+.++.++|++++||.|+||||||+|||
T Consensus       484 s~~a~~il~a~~a~----~t-------nt~~sq~k~~~pLvE~lds~k--~~~~l~~k~~n~~~l~P~~~PIP~KPlFFD  550 (593)
T KOG2460|consen  484 SLGAAVILLAEYAK----RT-------NTGGSQGKDNLPLVETLDSYK--LDLSLDTKLPNLFPLPPDFLPIPCKPLFFD  550 (593)
T ss_pred             hhhhhhhhhhccch----hc-------CCccccCCCcccHHHHHHHhc--ccchhhhccCccccCCcccccCCCcchHHH
Confidence            99999998752211    11       111234567999999999998  343567889999999999999999999999


Q ss_pred             hhccccCCCCchhhhhhc---------------cccccccccC
Q 007413          577 LAYNFIDFPSLENRMKKD---------------RKGFISRLWR  604 (604)
Q Consensus       577 lA~Nyi~yP~l~~~~k~~---------------~~G~~~~~~~  604 (604)
                      ||+|||+||.++++.++.               ..||+++|||
T Consensus       551 LA~~yl~~p~~edkleq~~k~~~~t~~~G~~k~~~Gf~~sf~g  593 (593)
T KOG2460|consen  551 LAFNYLTYPKLEDKLEQVKKSGTETTPTGEPKKKRGFLSSFGG  593 (593)
T ss_pred             HHHHhhcCCcccchhhhcCCCccccCCccccccchhhhhccCC
Confidence            999999999999988432               1388888886

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains

Probab=88.61  E-value=4.6  Score=43.05  Aligned_cols=77  Identities=18%  Similarity=0.075  Sum_probs=63.2

Q ss_pred             hhHHHHHHHHHHHHHHHhcc--cCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Q 007413          387 EELVRLYDLLLQNTADLSDL--VSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAE  464 (604)
Q Consensus       387 ~e~vrLyd~ilq~l~ei~eL--pgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~  464 (604)
                      .+...+|+...+.+......  .+       -+..+..-+..+..+|+|.=+|++|..+...+++-||++.+..|...++
T Consensus       210 ~~~~~~y~~A~~~l~~~~~~~~~~-------~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~  282 (345)
T cd09034         210 CEAAKYYEEALKCLSGVDLETIKN-------IPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAALELLK  282 (345)
T ss_pred             HHHHHHHHHHHHHHhcCCchhhhh-------hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            45777788888877764432  22       2448888899999999999999999999999999999999999999999


Q ss_pred             HHHHHH
Q 007413          465 NALKDF  470 (604)
Q Consensus       465 ~a~~~~  470 (604)
                      .+....
T Consensus       283 ~~~~~~  288 (345)
T cd09034         283 ESERLC  288 (345)
T ss_pred             HHHHHH
Confidence            887643

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=87.86  E-value=1.2  Score=30.97  Aligned_cols=27  Identities=30%  Similarity=0.309  Sum_probs=23.0

Q ss_pred             HHHHHHHHhhCChHHHHHHHHHHHHHH
Q 007413          437 FYLARSYSLAGKRTEAYALYCRARSHA  463 (604)
Q Consensus       437 ~~lA~sy~~~~K~~EAlaL~~ra~~~~  463 (604)
                      ..||..|...|+|.+|+.+|.+++...
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            459999999999999999999988544

>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome

Probab=87.82  E-value=2.5  Score=45.67  Aligned_cols=97  Identities=22%  Similarity=0.156  Sum_probs=67.1

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413          388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL  467 (604)
Q Consensus       388 e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~  467 (604)
                      ++..+|+.....+.....-..+       +..+..-+..+..||+|+-+|+.|..+...++|-||++.+..|...+..+.
T Consensus       201 ~~~~~Y~~a~~~l~~~~~~~~~-------~~~w~~~~~~K~~~~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~  273 (377)
T PF03097_consen  201 QASELYDEAHEALQSSPLSESI-------PKDWRSYVQVKSAYYRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEAS  273 (377)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHCS-------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence            3556666666555554321111       337888899999999999999999999999999999999999999999998


Q ss_pred             HHHhhhcCCcHHHHHHHHHHHHHhh
Q 007413          468 KDFQRMANSDQMMIEELKTLCKECR  492 (604)
Q Consensus       468 ~~~~~~~~~~~~~~~~l~~L~~~i~  492 (604)
                      +....+ .........+..+...|+
T Consensus       274 ~~~~~~-~~~~~~~~~~~~l~~~i~  297 (377)
T PF03097_consen  274 KLAKKC-SKSSSLQDDLKSLLDQIQ  297 (377)
T ss_dssp             HHCCCH-SCCSTTTHHHHHHHHHHH
T ss_pred             hhhhcc-cchHHHHHHHHHHHHHHH
Confidence            754322 112223344444555544

The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.53  E-value=1.4  Score=29.53  Aligned_cols=27  Identities=26%  Similarity=0.448  Sum_probs=23.5

Q ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413          436 CFYLARSYSLAGKRTEAYALYCRARSH  462 (604)
Q Consensus       436 c~~lA~sy~~~~K~~EAlaL~~ra~~~  462 (604)
                      ++.+|.+|...|+|.+|+..|.++...
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            567999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.80  E-value=1.9  Score=30.10  Aligned_cols=29  Identities=31%  Similarity=0.320  Sum_probs=23.5

Q ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007413          438 YLARSYSLAGKRTEAYALYCRARSHAENA  466 (604)
Q Consensus       438 ~lA~sy~~~~K~~EAlaL~~ra~~~~~~a  466 (604)
                      .||..|...|+|.||+.++.++.......
T Consensus         7 ~la~~~~~~g~~~~A~~~~~~al~~~~~~   35 (42)
T PF13374_consen    7 NLANAYRAQGRYEEALELLEEALEIRERL   35 (42)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence            49999999999999999999999887655

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=82.86  E-value=12  Score=40.41  Aligned_cols=83  Identities=14%  Similarity=0.131  Sum_probs=64.0

Q ss_pred             hhHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHH
Q 007413          387 EELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENA  466 (604)
Q Consensus       387 ~e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a  466 (604)
                      ..+..+|+.....+.+....+++..  ..-+.+...-+..+..||+|.=+|+.|......+||-|++|-|..|...+.+|
T Consensus       208 ~q~~~~Y~~a~~~l~~~~~~~~~~~--~~i~~~W~~~v~~K~~~f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a  285 (361)
T cd09239         208 AQVVEYYKEALRALENWESNSKIIL--GKIQKEWRKLVQMKIAYYASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEA  285 (361)
T ss_pred             HHHHHHHHHHHHHHhcccccccccc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3477888888888776322111001  01244788899999999999999999999999999999999999999999888


Q ss_pred             HHHHh
Q 007413          467 LKDFQ  471 (604)
Q Consensus       467 ~~~~~  471 (604)
                      .+...
T Consensus       286 ~~~~~  290 (361)
T cd09239         286 IKNAK  290 (361)
T ss_pred             HHHHh
Confidence            87543

This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l

>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins

Probab=82.74  E-value=17  Score=39.13  Aligned_cols=77  Identities=19%  Similarity=0.235  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413          388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL  467 (604)
Q Consensus       388 e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~  467 (604)
                      ++..+|....+.+..... ++..    --+.....-+..+..+|+|.=+||.|......+||-||+|-+..|...+..+.
T Consensus       204 ~~~~~Y~~a~~~l~~~~~-~~~~----~~~~~W~~~~~~K~~~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~  278 (348)
T cd09242         204 ATANLYESCVEFLKEIQE-KGIS----YGDPKWISLVQCKAHYYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEAN  278 (348)
T ss_pred             HHHHHHHHHHHHHhcccc-cccc----ccCHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHH
Confidence            566778777777665321 1110    01447778888999999999999999999999999999999999999998887


Q ss_pred             HH
Q 007413          468 KD  469 (604)
Q Consensus       468 ~~  469 (604)
                      +.
T Consensus       279 ~~  280 (348)
T cd09242         279 PQ  280 (348)
T ss_pred             HH
Confidence            64

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.06  E-value=3.4  Score=27.75  Aligned_cols=27  Identities=30%  Similarity=0.385  Sum_probs=23.2

Q ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHHH
Q 007413          436 CFYLARSYSLAGKRTEAYALYCRARSH  462 (604)
Q Consensus       436 c~~lA~sy~~~~K~~EAlaL~~ra~~~  462 (604)
                      .+.+|.+|...|+|.+|+.-|.+|++.
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            345999999999999999999999875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=81.63  E-value=6.9  Score=42.03  Aligned_cols=75  Identities=17%  Similarity=0.104  Sum_probs=58.9

Q ss_pred             hhHHHHHHHHHHHHHHHhc-ccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHH
Q 007413          387 EELVRLYDLLLQNTADLSD-LVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAEN  465 (604)
Q Consensus       387 ~e~vrLyd~ilq~l~ei~e-Lpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~  465 (604)
                      -+...+|+.....+..... +++       -+.++..-+..+..+|+|.=|+++|......+|+-||++.+..|...+..
T Consensus       213 ~~~~~~y~~A~~~l~~~~~~~~~-------i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~  285 (346)
T cd09247         213 YGATQFLEEAKNVLRSLATDLKD-------LDPRFLRFISSCIALHEARSQLYLARRLKEAGHIGVAVGVLREALRNLKK  285 (346)
T ss_pred             HHHHHHHHHHHHHHHccCcchhh-------cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH
Confidence            3456666666666654321 222       24589999999999999999999999999999999999999999998876


Q ss_pred             HHH
Q 007413          466 ALK  468 (604)
Q Consensus       466 a~~  468 (604)
                      +..
T Consensus       286 ~~~  288 (346)
T cd09247         286 KLP  288 (346)
T ss_pred             hhc
Confidence            654

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in

>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins

Probab=80.24  E-value=16  Score=39.37  Aligned_cols=72  Identities=18%  Similarity=0.148  Sum_probs=59.1

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q 007413          388 ELVRLYDLLLQNTADLSDLVSSGRERKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENAL  467 (604)
Q Consensus       388 e~vrLyd~ilq~l~ei~eLpgv~~~~~~~d~~l~~~l~a~~~~~~A~rc~~lA~sy~~~~K~~EAlaL~~ra~~~~~~a~  467 (604)
                      .+..+|+...+.+..   -+.+       +..+..-+..+..+|+|.=+|+.|......+||-|++|-+..|...+.++.
T Consensus       202 qv~~~Y~~a~~~l~~---~~~i-------~~~W~~~v~~K~~~f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~  271 (355)
T cd09241         202 QVSDYYQEALKYANK---SDLI-------RSDWINHLKVKKHHFKAAAHYRMALVALEKSKYGEEVARLRVALAACKEAL  271 (355)
T ss_pred             HHHHHHHHHHHHHhc---CCcc-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            466777777766651   1221       347888899999999999999999999999999999999999999999887


Q ss_pred             HH
Q 007413          468 KD  469 (604)
Q Consensus       468 ~~  469 (604)
                      +.
T Consensus       272 ~~  273 (355)
T cd09241         272 KE  273 (355)
T ss_pred             HH
Confidence            64

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	604
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-16

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 81.4 bits (200), Expect = 4e-16
 Identities = 101/673 (15%), Positives = 199/673 (29%), Gaps = 201/673 (29%)

Query: 4   NSETSAMEIDDKK--SINSDQIGPKFSINVLQ-----LLKSAQMQHGLRHGDYTRYRRYC 56
           + ET   +   K   S+  D     F    +Q     +L   ++ H +   D        
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV------ 61

Query: 57  TARLRRLYKSL---------KFTHGRGKYTRKAITESTVTEVR--FLHLVLY--TAERAW 103
            +   RL+ +L         KF     +   K +     TE R   +   +Y    +R +
Sbjct: 62  -SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120

Query: 104 S--HAMEKRQLPDGPNARQRIYLIGRLRKAVKWATLFSNLCAIKADP-----------RT 150
           +      K  +        R+    +LR+A         L  ++              +T
Sbjct: 121 NDNQVFAKYNVS-------RLQPYLKLRQA---------LLELRPAKNVLIDGVLGSGKT 164

Query: 151 SLEAEAYASY----MKGNLLFEQDQNWETALKNFKSARAVYEELGKYGDVENQVLC---- 202
            +  +   SY         +F     W   LKN  S   V E L        Q L     
Sbjct: 165 WVALDVCLSYKVQCKMDFKIF-----WLN-LKNCNSPETVLEML--------QKLLYQID 210

Query: 203 -------------RERVEELEPSIRYCL--HKIGES-----NVKTSELLQIGEMEGPALD 242
                        + R+  ++  +R  L             NV+ ++          A +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN-------AFN 263

Query: 243 LFKSKLEAVMAEARSQQAASLTEFHWLGHRFPISNAKTRVAILKAQELE---KDLHVKAA 299
               K   ++   R      +T+F        IS     + +   +      K L  +  
Sbjct: 264 -LSCK---ILLTTRF---KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ 316

Query: 300 DSLPAEKKLVIFDKIFTAYHEARGCIRSDLASAGNAENVKDDLFGLDKAVSAVLGQRTIE 359
           D LP                E      +    +  AE+++D L   D         + + 
Sbjct: 317 D-LP---------------REV--LTTNPRRLSIIAESIRDGLATWD-------NWKHVN 351

Query: 360 RNQLLVSIVKGKLTKQRDDKTGKVTKPEELVRLYDLL--LQNTAD-----LSDLVSSGRE 412
            ++L  +I++  L            +P E  +++D L     +A      LS +     +
Sbjct: 352 CDKLT-TIIESSLNVL---------EPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401

Query: 413 RKPEEVKFAEECELKSLAFRAERCFYLARSYSLAGKRTEAYALYCRARSHAENALKDFQR 472
                V    +    SL  +  +      + S+        ++Y   +   EN     + 
Sbjct: 402 SDVMVV--VNKLHKYSLVEKQPK----ESTISI-------PSIYLELKVKLENEYALHRS 448

Query: 473 MANSDQMMIEELKTLCKECRSNSCIE---------HAKGIMVEEKASE------NLS--- 514
           + +   +     KT   +      ++         H K I   E+ +       +     
Sbjct: 449 IVDHYNI----PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504

Query: 515 NKISTVSISGTGKKSFQVDKFLLEKLDVYESAVGDSNVKGAARIEA---F-PPAFQSIAR 570
            KI   S +     S  ++   L++L  Y+  + D++ K    + A   F P   +++  
Sbjct: 505 QKIRHDSTAWNASGSI-LN--TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLIC 561

Query: 571 NPI--VLDLAYNF 581
           +    +L +A   
Sbjct: 562 SKYTDLLRIALMA 574

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00