Citrus Sinensis ID: 007418

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIFPFPSLSREIFTHYLSNHTFFYLKLGSISMQMEPVYSNLRT
ccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHccccccccccccccccccEEEccccccccccEEEcccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHcccccccccEEHHHHHHHHHHHcEEEEEEEccEEEccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEEccccccEEEEEEcccccEEEEEEEccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHccccccccccccccccccEEccccccccccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccccccccEEccccccccccccccccccccEEEEcccccccccccccccHHHccccccccccccccccccHHHHccccccHHHccccccHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHccccccccccccHHHHHHHHHHccccEEEEEcccEEcccccccccccc
MITWKDLYLVLTAVVPLYVAMILAYGSVrwwkifspdqcsgiNRFVAIFAVPLlsfhfistndpyamnFRFIAADTLQKIIMLFVLGIWtnftkngsLEWMITIFSlstlpntlvMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFkvdsdvvsldgrdfletdaeigddgklHVTVRksnasrrslgpcslpaltprpsnltgaeiyslsssrnptprgsnfnhsdfysmmgvqgfpggrlsnfgpadmysvqssrgptprpsnfeensgqalssprfgfypaqtvptsypapnpefsstltknTSKTVQNNQQQQQQQQQQQQQQNVNvnskanhdakELHMFVwssstspvseggglhvfggtdfgasehsgrsdqGAKEIRMLVAdhpengenkalpqngdfgredfrfagrgegeddqmdhkeggpaelnklgsnstaelhpkatgaadagmgkhmppasVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMfslgecpsifpfpslsREIFTHYLSNHTFFYLKlgsismqmepvysnlrt
MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLetdaeigddgklhvtvrksnasrrslgpcslpaltprpsNLTGAEIYslsssrnptprgsnFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVADHpengenkalpqngdfgrEDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIFPFPSLSREIFTHYLSNHTFFYLKLGSISMQMEPVYSNLRT
MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTvqnnqqqqqqqqqqqqqqnvnvnSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIFPFPSLSREIFTHYLSNHTFFYLKLGSISMQMEPVYSNLRT
*ITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIG*******************************************************************************************************************************************************************************MFVW*************HVF******************************************************************************************************VMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIFPFPSLSREIFTHYLSNHTFFYLKLGSISM***********
*ITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKM********************DVVSLDGRDFLETDAEIGDDGKL****************************************************************************************************************************************************************************************************************************************************************************************************VMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIFPFPSLSREIFTHYLSNHTFFYLKLGSISMQMEPVYS*L**
MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMY**********************LSSPRFGFYPAQTVPTSYPAPNPEFSSTLTK*****************************KANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGA*********GAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGE*********EGGPAELNKLGSNSTAELHPKATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIFPFPSLSREIFTHYLSNHTFFYLKLGSISMQMEPVYSNLRT
MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKS****************PRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRL************SSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEF****************************************AKELHMFVWSSSTSPVSE*G**H*FGGTDFGASEHSGRSDQGAKEIR*LVADHP********************************************************************MPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIFPFPSLSREIFTHYLSNHTFFYLKLGSISMQMEPVY*****
iiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooo
ooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
oooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSGQALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVADHPENGENKALPQNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPKATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKIIEKSISILSDAGLGMAMFSLGECPSIFPFPSLSREIFTHYLSNHTFFYLKLGSISMQMEPVYSNLRT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query604 2.2.26 [Sep-21-2011]
Q9S7Z8640 Auxin efflux carrier comp yes no 0.889 0.839 0.758 0.0
Q940Y5619 Auxin efflux carrier comp no no 0.857 0.836 0.737 0.0
Q8RWZ6616 Auxin efflux carrier comp no no 0.849 0.832 0.724 0.0
Q5SMQ9595 Auxin efflux carrier comp yes no 0.799 0.811 0.570 1e-166
Q67UL3592 Probable auxin efflux car no no 0.802 0.819 0.572 1e-165
Q9C6B8622 Auxin efflux carrier comp no no 0.839 0.815 0.564 1e-165
Q5VP70618 Probable auxin efflux car no no 0.819 0.800 0.580 1e-165
Q9LU77647 Auxin efflux carrier comp no no 0.857 0.800 0.532 1e-157
Q651V6630 Probable auxin efflux car no no 0.836 0.801 0.508 1e-144
P0C0X5554 Probable auxin efflux car no no 0.730 0.796 0.505 1e-135
>sp|Q9S7Z8|PIN3_ARATH Auxin efflux carrier component 3 OS=Arabidopsis thaliana GN=PIN3 PE=1 SV=1 Back     alignment and function desciption
 Score =  822 bits (2122), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 426/562 (75%), Positives = 461/562 (82%), Gaps = 25/562 (4%)

Query: 1   MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60
           MI+W DLY VLTAV+PLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS
Sbjct: 1   MISWHDLYTVLTAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  TNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPL 120
           TN+PYAMN RFIAADTLQKIIML +L +W NFT++GSLEW ITIFSLSTLPNTLVMGIPL
Sbjct: 61  TNNPYAMNLRFIAADTLQKIIMLSLLVLWANFTRSGSLEWSITIFSLSTLPNTLVMGIPL 120

Query: 121 LIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD 180
           LIAMYGEYSGSLMVQ+VVLQCIIWYTLLLFLFE+RGAKMLIMEQFPETAASIVSFKV+SD
Sbjct: 121 LIAMYGEYSGSLMVQIVVLQCIIWYTLLLFLFEFRGAKMLIMEQFPETAASIVSFKVESD 180

Query: 181 VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLS 240
           VVSLDG DFLETDAEIGDDGKLHVTVRKSNASRRS   C  P +TPRPSNLTGAEIYSLS
Sbjct: 181 VVSLDGHDFLETDAEIGDDGKLHVTVRKSNASRRSF--CG-PNMTPRPSNLTGAEIYSLS 237

Query: 241 SSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSG 300
           +    TPRGSNFNHSDFY+MM   GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEEN  
Sbjct: 238 T----TPRGSNFNHSDFYNMM---GFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENCA 290

Query: 301 QALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNVNV 360
            A SSPRFG+YP      SYPAPNPEFSST T   +K+V  N +     QQ         
Sbjct: 291 MA-SSPRFGYYPGGGA-GSYPAPNPEFSSTTTSTANKSVNKNPKDVNTNQQTTLPTGGKS 348

Query: 361 NSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVADH 420
           NS   HDAKELHMFVWSS+ SPVS+  GL+VFGG     ++  GRSDQGAKEIRMLV D 
Sbjct: 349 NS---HDAKELHMFVWSSNGSPVSDRAGLNVFGGAP--DNDQGGRSDQGAKEIRMLVPDQ 403

Query: 421 PENGENKAL--PQNGDFGRE-DFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPK 477
             NGE KA+  P +GDFG E  F FAG+ E  +   D + G    LNKL  NSTA L  K
Sbjct: 404 SHNGETKAVAHPASGDFGGEQQFSFAGKEEEAERPKDAENG----LNKLAPNSTAALQSK 459

Query: 478 -ATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPK 536
              G A+A   K+MPPASVMTRLILIMVWRKLIRNPNTYSSLIGL+W+L+AFRWHV+MPK
Sbjct: 460 TGLGGAEASQRKNMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLIWALVAFRWHVAMPK 519

Query: 537 IIEKSISILSDAGLGMAMFSLG 558
           II++SISILSDAGLGMAMFSLG
Sbjct: 520 IIQQSISILSDAGLGMAMFSLG 541
Acts as a component of the auxin efflux carrier. Seems to be involved in the lateral auxin transport system and mediates tropic growth. Coordinated polar localization of PIN3 is directly regulated by the vesicle trafficking process.
Arabidopsis thaliana (taxid: 3702)
>sp|Q940Y5|PIN7_ARATH Auxin efflux carrier component 7 OS=Arabidopsis thaliana GN=PIN7 PE=1 SV=2 Back     alignment and function description
>sp|Q8RWZ6|PIN4_ARATH Auxin efflux carrier component 4 OS=Arabidopsis thaliana GN=PIN4 PE=1 SV=1 Back     alignment and function description
>sp|Q5SMQ9|PIN1_ORYSJ Auxin efflux carrier component 1 OS=Oryza sativa subsp. japonica GN=PIN1 PE=2 SV=1 Back     alignment and function description
>sp|Q67UL3|PIN1C_ORYSJ Probable auxin efflux carrier component 1c OS=Oryza sativa subsp. japonica GN=PIN1C PE=2 SV=1 Back     alignment and function description
>sp|Q9C6B8|PINI_ARATH Auxin efflux carrier component 1 OS=Arabidopsis thaliana GN=PIN1 PE=1 SV=1 Back     alignment and function description
>sp|Q5VP70|PIN3A_ORYSJ Probable auxin efflux carrier component 3a OS=Oryza sativa subsp. japonica GN=PIN3A PE=2 SV=1 Back     alignment and function description
>sp|Q9LU77|PIN2_ARATH Auxin efflux carrier component 2 OS=Arabidopsis thaliana GN=PIN2 PE=1 SV=2 Back     alignment and function description
>sp|Q651V6|PIN2_ORYSJ Probable auxin efflux carrier component 2 OS=Oryza sativa subsp. japonica GN=PIN2 PE=2 SV=1 Back     alignment and function description
>sp|P0C0X5|PIN1B_ORYSJ Probable auxin efflux carrier component 1b OS=Oryza sativa subsp. japonica GN=PIN1B PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
21435938640 PIN1-like auxin transport protein [Popul 0.890 0.840 0.848 0.0
31872087619 PIN1-like protein [Populus tomentosa] 0.890 0.869 0.846 0.0
224101827649 auxin efflux carrier component [Populus 0.907 0.844 0.853 0.0
224108335645 auxin efflux carrier component [Populus 0.900 0.843 0.837 0.0
255570112646 Auxin efflux carrier component, putative 0.902 0.843 0.842 0.0
225424210649 PREDICTED: auxin efflux carrier componen 0.900 0.838 0.828 0.0
147774879627 hypothetical protein VITISV_013835 [Viti 0.864 0.832 0.813 0.0
449503397637 PREDICTED: auxin efflux carrier componen 0.884 0.838 0.804 0.0
449465515643 PREDICTED: LOW QUALITY PROTEIN: auxin ef 0.882 0.828 0.806 0.0
300068805636 auxin efflux facilitator [Cucumis sativu 0.882 0.838 0.800 0.0
>gi|21435938|gb|AAM54033.1|AF515434_1 PIN1-like auxin transport protein [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
 Score =  957 bits (2475), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/561 (84%), Positives = 496/561 (88%), Gaps = 23/561 (4%)

Query: 1   MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60
           MI+W DLY VL+AV+PLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS
Sbjct: 1   MISWNDLYNVLSAVIPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query: 61  TNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPL 120
           TNDPYAMNFRFIAADTLQKIIML  LGIWTNFTKNGSLEWMITIFS+STLPNTLVMGIPL
Sbjct: 61  TNDPYAMNFRFIAADTLQKIIMLIALGIWTNFTKNGSLEWMITIFSVSTLPNTLVMGIPL 120

Query: 121 LIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD 180
           L AMYG YSGSLMVQ+VVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD
Sbjct: 121 LTAMYGTYSGSLMVQIVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD 180

Query: 181 VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLS 240
           VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGP S   +TPRPSNLTGAEIYSLS
Sbjct: 181 VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPGSFSGMTPRPSNLTGAEIYSLS 240

Query: 241 SSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSG 300
           SSRNPTPRGSNFN SDFYSMMGVQGFP GR SN GPAD+YSVQSSRGPTPRPSNFEEN  
Sbjct: 241 SSRNPTPRGSNFNPSDFYSMMGVQGFP-GRHSNLGPADLYSVQSSRGPTPRPSNFEENCA 299

Query: 301 --QALSSPRFGFYPAQTVPTSYPAPNPEFSSTLTKNTSKTVQNNQQQQQQQQQQQQQQNV 358
               LSSPRFGFYPAQTVPTSYPAPNPEF+ST+T  T+K    NQQQQ            
Sbjct: 300 PTATLSSPRFGFYPAQTVPTSYPAPNPEFASTVTTKTAK----NQQQQ------------ 343

Query: 359 NVNSKANHDAKELHMFVWSSSTSPVSEGGGLHVFGGTDFGASEHSGRSDQGAKEIRMLVA 418
             NSKANHDAKELHMFVWSSS SPVSEGGGLHVFGGTDFGASE SGRSDQGAKEIRMLVA
Sbjct: 344 --NSKANHDAKELHMFVWSSSASPVSEGGGLHVFGGTDFGASEQSGRSDQGAKEIRMLVA 401

Query: 419 DHPENGENKALP-QNGDFGREDFRFAGRGEGEDDQMDHKEGGPAELNKLGSNSTAELHPK 477
           DHP+NGE K +P Q+GDF  EDF FAGRGEG+D     KE GP  LNKLGS+STAEL PK
Sbjct: 402 DHPQNGETKTIPQQDGDFAGEDFSFAGRGEGDDVDQREKE-GPTGLNKLGSSSTAELQPK 460

Query: 478 ATGAADAGMGKHMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLVWSLIAFRWHVSMPKI 537
           A  A D+G  + MPPASVMTRLILIMVWRKLIRNPNTYSSLIGL WSL+AFRWHV MPKI
Sbjct: 461 AAEAPDSGGSRKMPPASVMTRLILIMVWRKLIRNPNTYSSLIGLTWSLVAFRWHVEMPKI 520

Query: 538 IEKSISILSDAGLGMAMFSLG 558
           I++SISILSDAGLGMAMFSLG
Sbjct: 521 IKQSISILSDAGLGMAMFSLG 541

Source: Populus tremula x Populus tremuloides

Species: Populus tremula x Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|31872087|gb|AAP59843.1| PIN1-like protein [Populus tomentosa] Back     alignment and taxonomy information
>gi|224101827|ref|XP_002312436.1| auxin efflux carrier component [Populus trichocarpa] gi|222852256|gb|EEE89803.1| auxin efflux carrier component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108335|ref|XP_002314810.1| auxin efflux carrier component [Populus trichocarpa] gi|222863850|gb|EEF00981.1| auxin efflux carrier component [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255570112|ref|XP_002526018.1| Auxin efflux carrier component, putative [Ricinus communis] gi|223534665|gb|EEF36358.1| Auxin efflux carrier component, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225424210|ref|XP_002284302.1| PREDICTED: auxin efflux carrier component 3 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147774879|emb|CAN66787.1| hypothetical protein VITISV_013835 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449503397|ref|XP_004161982.1| PREDICTED: auxin efflux carrier component 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449465515|ref|XP_004150473.1| PREDICTED: LOW QUALITY PROTEIN: auxin efflux carrier component 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|300068805|dbj|BAJ10466.1| auxin efflux facilitator [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
TAIR|locus:2038781616 PIN4 "AT2G01420" [Arabidopsis 0.518 0.508 0.836 9.5e-187
TAIR|locus:2013975640 PIN3 "AT1G70940" [Arabidopsis 0.728 0.687 0.712 2.2e-162
TAIR|locus:2035037622 PIN1 "AT1G73590" [Arabidopsis 0.688 0.668 0.563 8.3e-151
UNIPROTKB|Q5SMQ9595 PIN1 "Auxin efflux carrier com 0.518 0.526 0.662 4.7e-146
TAIR|locus:2201225619 PIN7 "AT1G23080" [Arabidopsis 0.541 0.528 0.842 9.3e-146
TAIR|locus:2175559647 EIR1 "AT5G57090" [Arabidopsis 0.870 0.812 0.515 8.8e-134
TAIR|locus:2025312570 PIN6 "AT1G77110" [Arabidopsis 0.491 0.521 0.512 2.5e-100
TAIR|locus:2147835367 PIN8 "AT5G15100" [Arabidopsis 0.314 0.517 0.45 2e-61
TAIR|locus:2171392351 PIN5 "AT5G16530" [Arabidopsis 0.259 0.447 0.535 1.1e-58
TAIR|locus:2038781 PIN4 "AT2G01420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1379 (490.5 bits), Expect = 9.5e-187, Sum P(2) = 9.5e-187
 Identities = 277/331 (83%), Positives = 291/331 (87%)

Query:     1 MITWKDLYLVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60
             MITW DLY VLTAVVPLYVAMILAYGSV+WWKIFSPDQCSGINRFVAIFAVPLLSFHFIS
Sbjct:     1 MITWHDLYTVLTAVVPLYVAMILAYGSVQWWKIFSPDQCSGINRFVAIFAVPLLSFHFIS 60

Query:    61 TNDPYAMNFRFIAADTLQKIIMLFVLGIWTNFTKNGSLEWMITIFSLSTLPNTLVMGIPL 120
             TNDPYAMNFRF+AADTLQKIIML +L +W N TKNGSLEWMITIFSLSTLPNTLVMGIPL
Sbjct:    61 TNDPYAMNFRFVAADTLQKIIMLVLLALWANLTKNGSLEWMITIFSLSTLPNTLVMGIPL 120

Query:   121 LIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIVSFKVDSD 180
             LIAMYG Y+GSLMVQVVVLQCIIWYTLLLFLFEYRGAK+LIMEQFPET ASIVSFKV+SD
Sbjct:   121 LIAMYGTYAGSLMVQVVVLQCIIWYTLLLFLFEYRGAKLLIMEQFPETGASIVSFKVESD 180

Query:   181 VVSLDGRDFLETDAEIGDDGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLS 240
             VVSLDG DFLETDAEIG+DGKLHVTVRKSNASRRSL       +TPRPSNLTGAEIYSLS
Sbjct:   181 VVSLDGHDFLETDAEIGNDGKLHVTVRKSNASRRSL------MMTPRPSNLTGAEIYSLS 234

Query:   241 SSRNPTPRGSNFNHSDFYSMMGVQGFPGGRLSNFGPADMYSVQSSRGPTPRPSNFEENSG 300
             S    TPRGSNFNHSDFYS+MG   FPGGRLSNFGPAD+YSVQSSRGPTPRPSNFEEN+ 
Sbjct:   235 S----TPRGSNFNHSDFYSVMG---FPGGRLSNFGPADLYSVQSSRGPTPRPSNFEENNA 287

Query:   301 QALSSPRFGFYPAQTVPT--SYPAPNPEFSS 329
                    F      +VP   SYPAPNPEFS+
Sbjct:   288 VKYG---FYNNTNSSVPAAGSYPAPNPEFST 315
GO:0005215 "transporter activity" evidence=ISS
GO:0009672 "auxin:hydrogen symporter activity" evidence=ISS
GO:0009926 "auxin polar transport" evidence=ISS;RCA;IMP
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0048364 "root development" evidence=IMP
GO:0007389 "pattern specification process" evidence=IGI;RCA
GO:0000271 "polysaccharide biosynthetic process" evidence=RCA
GO:0008361 "regulation of cell size" evidence=RCA
GO:0009825 "multidimensional cell growth" evidence=RCA
GO:0009932 "cell tip growth" evidence=RCA
GO:0010015 "root morphogenesis" evidence=RCA
GO:0010218 "response to far red light" evidence=RCA
GO:0010817 "regulation of hormone levels" evidence=RCA
GO:0040007 "growth" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048765 "root hair cell differentiation" evidence=RCA
GO:0048767 "root hair elongation" evidence=RCA
GO:0071555 "cell wall organization" evidence=RCA
TAIR|locus:2013975 PIN3 "AT1G70940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035037 PIN1 "AT1G73590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SMQ9 PIN1 "Auxin efflux carrier component 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2201225 PIN7 "AT1G23080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175559 EIR1 "AT5G57090" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025312 PIN6 "AT1G77110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2147835 PIN8 "AT5G15100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171392 PIN5 "AT5G16530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9S7Z8PIN3_ARATHNo assigned EC number0.75800.88900.8390yesno
Q8RWZ6PIN4_ARATHNo assigned EC number0.72410.84930.8327nono
Q940Y5PIN7_ARATHNo assigned EC number0.73750.85760.8368nono
Q5SMQ9PIN1_ORYSJNo assigned EC number0.57090.79960.8117yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
PIN6
auxin efflux carrier component (649 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
pfam03547321 pfam03547, Mem_trans, Membrane transport protein 5e-58
TIGR00946321 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam 2e-53
pfam03547321 pfam03547, Mem_trans, Membrane transport protein 2e-20
TIGR00946321 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Fam 1e-18
COG0679311 COG0679, COG0679, Predicted permeases [General fun 1e-11
COG0679311 COG0679, COG0679, Predicted permeases [General fun 3e-05
pfam11593381 pfam11593, Med3, Mediator complex subunit 3 fungal 0.002
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein Back     alignment and domain information 
 Score =  197 bits (502), Expect = 5e-58
 Identities = 66/166 (39%), Positives = 90/166 (54%), Gaps = 3/166 (1%)

Query: 10  VLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNF 69
           V+ AV+P+++ M+L Y + +   I  PDQ SGIN+ V  FA+PLL F  ISTN    M  
Sbjct: 2   VVEAVLPVFLIMLLGYLAGKS-GILPPDQASGINKLVVYFALPLLIFSSISTNVTLEMIV 60

Query: 70  RFIAADTLQKIIMLFVLGIWTNFTK--NGSLEWMITIFSLSTLPNTLVMGIPLLIAMYGE 127
            F     L  +I+   L I    +K     LEW   +   S  PNT  +G+PLL+A+YGE
Sbjct: 61  DFWLIPVLVVLIVAISLIIGFLVSKIFKLPLEWRGVLILTSAFPNTGFLGLPLLLALYGE 120

Query: 128 YSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQFPETAASIV 173
              S  +  VVL  II +TL  FL E RGAK    E+  +T+ S+ 
Sbjct: 121 EGLSYAIISVVLGVIIIWTLGYFLIESRGAKRDKSEESGDTSGSMT 166

This family includes auxin efflux carrier proteins and other transporter proteins from all domains of life. Length = 321
>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>gnl|CDD|217608 pfam03547, Mem_trans, Membrane transport protein Back     alignment and domain information
>gnl|CDD|233203 TIGR00946, 2a69, he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information
>gnl|CDD|223751 COG0679, COG0679, Predicted permeases [General function prediction only] Back     alignment and domain information
>gnl|CDD|221143 pfam11593, Med3, Mediator complex subunit 3 fungal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 604
PF03547385 Mem_trans: Membrane transport protein; InterPro: I 99.97
COG0679311 Predicted permeases [General function prediction o 99.78
PRK09903314 putative transporter YfdV; Provisional 99.74
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 99.74
KOG2722408 consensus Predicted membrane protein [Function unk 98.1
TIGR00946321 2a69 he Auxin Efflux Carrier (AEC) Family. 97.39
PRK09903314 putative transporter YfdV; Provisional 96.83
COG0679311 Predicted permeases [General function prediction o 96.16
TIGR00841286 bass bile acid transporter. Functionally character 95.03
PF13593313 DUF4137: SBF-like CPA transporter family (DUF4137) 91.76
PF05684378 DUF819: Protein of unknown function (DUF819); Inte 87.21
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea Back     alignment and domain information 
Probab=99.97  E-value=5e-30  Score=265.81  Aligned_cols=190  Identities=31%  Similarity=0.482  Sum_probs=143.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcCChhhhhHHHHHHHHHHHHHHHHHHhhcCCcC-cc-hHHHHHHHH-HHHHHHHHH
Q 007418            9 LVLTAVVPLYVAMILAYGSVRWWKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPY-AM-NFRFIAADT-LQKIIMLFV   85 (604)
Q Consensus         9 ~VLsAVLPLFlLIaLGYls~R~~gIft~e~~s~LNrFVf~VALPaLLF~~Ia~~d~~-~l-n~~fI~a~a-L~~lIv~lI   85 (604)
                      +++++++|+|+++++||+++|+ |++++++.+.++++|+++++|||+|..+++.... .+ ++.++.... +..++.+++
T Consensus         1 ~v~~~i~~i~~ii~~G~~~~~~-~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (385)
T PF03547_consen    1 TVFSAILPIFLIILLGYLLGRF-GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL   79 (385)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence            4789999999999999999997 9999999999999999999999999999987533 33 444443332 222222223


Q ss_pred             HHHHHHHhhCCCcccceeeeeE-EeecchhhhHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhh
Q 007418           86 LGIWTNFTKNGSLEWMITIFSL-STLPNTLVMGIPLLIAMYGEYSGSLMVQVVVLQCIIWYTLLLFLFEYRGAKMLIMEQ  164 (604)
Q Consensus        86 L~l~~rf~k~~~ldw~~tLfsL-SsfpNTgfMGIPLL~ALyGeeal~lav~ivVlq~II~~TLgL~LlE~~~ak~Li~kq  164 (604)
                      .+++.++++.+ .++ ...+.+ ++++|++++|+|++.++||+++..+++++.+++++++|+++..+++.++++.-..++
T Consensus        80 ~~~~~~~~~~~-~~~-~~~~~~~~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~  157 (385)
T PF03547_consen   80 GFLLSRLFRLP-KEW-RGVFVLAASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEE  157 (385)
T ss_pred             HHHHHHhcCCC-ccc-ceEEEecccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccc
Confidence            33333433322 333 334444 688999999999999999999999999999999999999999999988777665555


Q ss_pred             hHHHhhhceeeeeccceeeccCCCcccccccccCCCc
Q 007418          165 FPETAASIVSFKVDSDVVSLDGRDFLETDAEIGDDGK  201 (604)
Q Consensus       165 fpktaasIv~f~Id~~VlsL~G~~P~~~~aev~~~Gk  201 (604)
                      ..+...+....+.|.+..+.++.+|.+++.+.+++++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (385)
T PF03547_consen  158 EPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGS  194 (385)
T ss_pred             cccccccccccccCCccccCCcccccccccccccCCc
Confidence            5555666677777777777777666666666665544

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>KOG2722 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family Back     alignment and domain information
>PRK09903 putative transporter YfdV; Provisional Back     alignment and domain information
>COG0679 Predicted permeases [General function prediction only] Back     alignment and domain information
>TIGR00841 bass bile acid transporter Back     alignment and domain information
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137) Back     alignment and domain information
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 47.5 bits (112), Expect = 1e-05
 Identities = 47/265 (17%), Positives = 83/265 (31%), Gaps = 66/265 (24%)

Query: 31  WKIFSPDQCSGINRFVAIFAVPLLSFHFISTNDPYAMNFRFIAADTLQKIIMLFVLGIWT 90
           W  F+   C             +L    ++T         F++A T   I +        
Sbjct: 259 WNAFNL-SC------------KIL----LTTRF--KQVTDFLSAATTTHISLDHHSM--- 296

Query: 91  NFTKNGSLEWMITIFSLST--LPNTLVMGIPLLIAMYGE--------YSGSLMVQVVVLQ 140
             T +     ++         LP  ++   P  +++  E        +     V    L 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356

Query: 141 CIIWYTL-LLFLFEYRGA-KMLIMEQFPETAASIVSFKVDSDVVSLDGRDFLETDAEIGD 198
            II  +L +L   EYR     L +  FP +A       + + ++SL   D +++D  +  
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSV--FPPSA------HIPTILLSLIWFDVIKSDVMVVV 408

Query: 199 DGKLHVTVRKSNASRRSLGPCSLPALTPRPSNLTGAEIYSLSSSRNPTPRGSNFNHS--- 255
           + KLH         + SL       +  +P   T   I S+              H    
Sbjct: 409 N-KLH---------KYSL-------VEKQPKEST-ISIPSIYLELKVKLENEYALHRSIV 450

Query: 256 DFYSMMGVQGFPGGRLSNFGPADMY 280
           D Y++   + F    L      D Y
Sbjct: 451 DHYNIP--KTFDSDDLIP-PYLDQY 472

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query604
3zux_A332 Transporter, ASBTNM; transport protein, membrane p 90.52
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Back     alignment and structure
Probab=90.52  E-value=1.6  Score=44.96  Aligned_cols=36  Identities=14%  Similarity=0.035  Sum_probs=24.7

Q ss_pred             EeecchhhhHHHHHHHHhCC--CchhHHHHHHHHHHHHH
Q 007418          108 STLPNTLVMGIPLLIAMYGE--YSGSLMVQVVVLQCIIW  144 (604)
Q Consensus       108 SsfpNTgfMGIPLL~ALyGe--eal~lav~ivVlq~II~  144 (604)
                      ++.-|+ -+|+++....||+  ......+++.++|.+..
T Consensus       266 ~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~  303 (332)
T 3zux_A          266 VGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNISG  303 (332)
T ss_dssp             HHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHH
T ss_pred             hhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            455787 5999999999963  33345556666666554

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00