Citrus Sinensis ID: 007421

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR
ccEEEEEEccccccEEccEEEEEEEEEcccccccccccccccccccccEEEEEEEcccccccEEEEcccccccEEcccHHHcccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHHccccEEEEEccccccccccccccEEEEEEEcccccEEEEEEEEEHHHHHccccccccHHHHHHHHHHHHcccEEEEEEEEHHccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccEEEEccccccHHHHccccccccccccccccEEEEEEEEEEcccc
ccEEEEEEccccccEEEEEEEEEEEEEcccccccHccccccccccccEEEEEEEEEcccccEEEEccccccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEcccHHHccEEEEEEEEccccccccccccHHHHccccccccccccccccEEEccccccccccccccccccccccEEEEEEHHHHHHHccHHHcccccHHHHcHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHccccEEEEccccEccccccccccEEEEEEccccEEEEEccEEEHHHHHHHccccccccHccHHHHHHHHHccEEEEEEEEEEcccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHccccccccHHHccccccccccccccccccccHHHHHHHccccccccHHHHHHccccccccccccccccccccEEEEEEEcccccEEEEccccccHHHHHccccccccccccccHHHHEEEEEcccccc
MLSVLRvhlpsdipivgceltpyvllrrpdnavttedvpesapidghflRYKWYRiqsdrkvavcsvhpseqatLQCLGcvkakipvaksyhcspkcfsdawQHHRVLHDRAASavnengneeeELFGRfnstgsgvinaslsgsasnssltngstplypaavtrsggetwfevgrsktytpsaddigHVLKFECVVvdaetklpvghpntlltsrvipapspsprrlfpvngsdmnmmghidsdgrisstgTFSVLSYNILSDVyatsesysycpswaLSWAYRRQNLLREIIGYRADIVCLQEvqndhfeeffapeldkhgyqALYKrktnevyngnphtidgcatffrrdrfshvkKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAkfsnqgadtpgkrQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAasadipmlvcgdfnsvpgsaphallamgkvepvhpdlavdpltilrphtklthqlplvsaysSFARigvglgmehqrrrmdpttneplfthctrdfigTLDYIFYTADSLSVESLLELLdedslrkdtalpspewssDHIALLAEFrckprarr
MLSVLRVHlpsdipivgceLTPYVLLRRPDNavttedvpesapidghfLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTytpsaddigHVLKFECVVVDAEtklpvghpntlltsrvipapspspRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRktnevyngnphTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKfsnqgadtpGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLgmehqrrrmdpttneplfthCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTAlpspewssdhiallaefrckprarr
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVnengneeeeLFGRFNSTGSGVINaslsgsasnssltngstPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAdslsvesllelldedslRKDTALPSPEWSSDHIALLAEFRCKPRARR
***VLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDR*************************************************AAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTS********************************ISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGME**********NEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLD******************HIALLAEF********
*LSVLRVHLPSDIPIVGCELTPYVLLRRPDN***********PIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLH**********************STGSGVINAS*******************************EVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN************STGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEF*CKPR***
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLS*********NGSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR
MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNEN**********************************GSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGS****MGH***DGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKP****
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MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query604 2.2.26 [Sep-21-2011]
Q8W0Z9602 Carbon catabolite repress yes no 0.985 0.988 0.779 0.0
Q9M2F8603 Carbon catabolite repress no no 0.991 0.993 0.767 0.0
O74874690 Glucose-repressible alcoh yes no 0.513 0.449 0.336 5e-51
Q4P9T3670 Glucose-repressible alcoh N/A no 0.524 0.473 0.339 7e-51
Q1EA11758 Glucose-repressible alcoh N/A no 0.544 0.434 0.317 8e-49
A2BHJ4559 CCR4-NOT transcription co no no 0.541 0.584 0.331 1e-48
Q6CEJ6705 Glucose-repressible alcoh yes no 0.509 0.436 0.326 2e-47
Q9ULM6557 CCR4-NOT transcription co yes no 0.567 0.615 0.319 6e-47
Q5BJ41552 CCR4-NOT transcription co N/A no 0.592 0.648 0.313 1e-46
Q6AXU9557 CCR4-NOT transcription co yes no 0.586 0.635 0.313 1e-46
>sp|Q8W0Z9|CCR4A_ARATH Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  957 bits (2474), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/607 (77%), Positives = 537/607 (88%), Gaps = 12/607 (1%)

Query: 1   MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
           MLSV+RVHLPS+IPIVGCELTPYVLLRRPD   +T+DVPESAP++GHFL+Y+W+R+QSD+
Sbjct: 1   MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYRWFRVQSDK 60

Query: 61  KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG 120
           KVA+CSVHPSE ATLQCLGC+K+K+PVAKSYHCS KCFSDAWQHHRVLH+RAASA  E G
Sbjct: 61  KVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAASAATE-G 119

Query: 121 NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTR---SGGETWFEVGRS 177
           N+EEEL  R NS+      +     +++ SLTNGS+ +YP+A+T+   +GGET  EVGRS
Sbjct: 120 NDEEEL-PRLNSS-----GSGSGVLSTSVSLTNGSSSVYPSAITQKTGAGGETLVEVGRS 173

Query: 178 KTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN 237
           KTYTP ADDI HVLKFECVVV+AETK  VG   T+LTSRVIPAPSPSPRRL  ++G+D+ 
Sbjct: 174 KTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLISISGTDVT 233

Query: 238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR 297
             GH+DS+GR  S GTF+VLSYNILSD YA+S+ YSYCP+WAL+W YRRQNLLREI+ YR
Sbjct: 234 --GHLDSNGRPLSMGTFTVLSYNILSDTYASSDIYSYCPTWALAWTYRRQNLLREIVKYR 291

Query: 298 ADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSH 357
           ADIVCLQEVQNDHFEEFF PELDKHGYQ L+KRKTNEV+ GN +TIDGCATFFRRDRFSH
Sbjct: 292 ADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSH 351

Query: 358 VKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQL 417
           VKKYEVEFNKAAQSLT+AI+P +QKKNALNRLVKDNVALIVVLEAKF +Q AD PGKRQL
Sbjct: 352 VKKYEVEFNKAAQSLTEAIIPVSQKKNALNRLVKDNVALIVVLEAKFGSQAADNPGKRQL 411

Query: 418 LCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM 477
           LCVANTHVNV  ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFN+VP SAPH LLA+
Sbjct: 412 LCVANTHVNVPHELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASAPHTLLAV 471

Query: 478 GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEP 537
           GKV+P+HPDL VDPL ILRPH+KLTHQLPLVSAYS FA++G  +  E QRRR+DP ++EP
Sbjct: 472 GKVDPLHPDLMVDPLGILRPHSKLTHQLPLVSAYSQFAKMGGNVITEQQRRRLDPASSEP 531

Query: 538 LFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFR 597
           LFT+CTRDFIGTLDYIFYTAD+L+VESLLELLDE+SLRKDTALPSPEWSSDHIALLAEFR
Sbjct: 532 LFTNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFR 591

Query: 598 CKPRARR 604
           C PRARR
Sbjct: 592 CMPRARR 598
Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: 4
>sp|Q9M2F8|CCR4B_ARATH Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2 Back     alignment and function description
>sp|O74874|CCR4_SCHPO Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ccr4 PE=3 SV=1 Back     alignment and function description
>sp|Q4P9T3|CCR4_USTMA Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CCR4 PE=3 SV=1 Back     alignment and function description
>sp|Q1EA11|CCR4_COCIM Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Coccidioides immitis (strain RS) GN=CCR4 PE=3 SV=2 Back     alignment and function description
>sp|A2BHJ4|CNO6L_DANRE CCR4-NOT transcription complex subunit 6-like OS=Danio rerio GN=cnot6l PE=2 SV=1 Back     alignment and function description
>sp|Q6CEJ6|CCR4_YARLI Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CCR4 PE=3 SV=1 Back     alignment and function description
>sp|Q9ULM6|CNOT6_HUMAN CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2 Back     alignment and function description
>sp|Q5BJ41|CNOT6_XENLA CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1 Back     alignment and function description
>sp|Q6AXU9|CNOT6_RAT CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
255580696603 carbon catabolite repressor protein, put 0.996 0.998 0.899 0.0
224139930603 predicted protein [Populus trichocarpa] 0.996 0.998 0.895 0.0
225441541603 PREDICTED: carbon catabolite repressor p 0.996 0.998 0.897 0.0
147789110603 hypothetical protein VITISV_044263 [Viti 0.996 0.998 0.895 0.0
224088166602 predicted protein [Populus trichocarpa] 0.996 1.0 0.890 0.0
449480842603 PREDICTED: carbon catabolite repressor p 0.996 0.998 0.823 0.0
356572657600 PREDICTED: carbon catabolite repressor p 0.990 0.996 0.843 0.0
356505479602 PREDICTED: carbon catabolite repressor p 0.990 0.993 0.842 0.0
115481988605 Os10g0412100 [Oryza sativa Japonica Grou 0.993 0.991 0.781 0.0
449457289608 PREDICTED: LOW QUALITY PROTEIN: carbon c 0.996 0.990 0.8 0.0
>gi|255580696|ref|XP_002531170.1| carbon catabolite repressor protein, putative [Ricinus communis] gi|223529240|gb|EEF31213.1| carbon catabolite repressor protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1101 bits (2848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/605 (89%), Positives = 581/605 (96%), Gaps = 3/605 (0%)

Query: 1   MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
           MLSV+RVHLPSDIPIVGCELTPYVLLRRPD AVTT+DVPESAP+DGHFLRYKWYRIQSDR
Sbjct: 1   MLSVIRVHLPSDIPIVGCELTPYVLLRRPDKAVTTDDVPESAPLDGHFLRYKWYRIQSDR 60

Query: 61  KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG 120
           KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCS KCFSDAWQHHRVLHDRAASAV+ENG
Sbjct: 61  KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSTKCFSDAWQHHRVLHDRAASAVSENG 120

Query: 121 NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVT-RSGGETWFEVGRSKT 179
           N+EEE+FGRFNSTGSGV+N SLS SAS +SLTNGS PLYPAAV  RSGGETWFEVGRSKT
Sbjct: 121 NDEEEVFGRFNSTGSGVLNTSLSSSASTASLTNGSAPLYPAAVAQRSGGETWFEVGRSKT 180

Query: 180 YTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMM 239
           YTPSADDIGHVLKFECVVVDAE+KLPVGHPNT+LTSRVIPAPSP+PRRL PV+G D+  M
Sbjct: 181 YTPSADDIGHVLKFECVVVDAESKLPVGHPNTILTSRVIPAPSPTPRRLIPVSGIDV--M 238

Query: 240 GHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRAD 299
           GH+DSDGRISS+GTF+VLSYNILSDVYATSE+YSYCPSWALSW YRRQNLLREI+GYRAD
Sbjct: 239 GHLDSDGRISSSGTFTVLSYNILSDVYATSETYSYCPSWALSWPYRRQNLLREIVGYRAD 298

Query: 300 IVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVK 359
           IVCLQEVQNDH+EEFFAPELDKHGYQALYKRKTNEVY+GN  TIDGCATFFRRDRFSHVK
Sbjct: 299 IVCLQEVQNDHYEEFFAPELDKHGYQALYKRKTNEVYSGNSPTIDGCATFFRRDRFSHVK 358

Query: 360 KYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLC 419
           KYEVEFNKAAQSLT+A++PSAQ+K ALNRLVKDNVALIVVLEAKFSNQGAD PGKRQLLC
Sbjct: 359 KYEVEFNKAAQSLTEAVVPSAQRKTALNRLVKDNVALIVVLEAKFSNQGADNPGKRQLLC 418

Query: 420 VANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGK 479
           VANTHVN+H +LKDVKLWQV TLLKGLEKIAASADIPMLVCGDFNS+PGSAPH+LLAMGK
Sbjct: 419 VANTHVNIHHDLKDVKLWQVLTLLKGLEKIAASADIPMLVCGDFNSMPGSAPHSLLAMGK 478

Query: 480 VEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLF 539
           V+P+HPDL +DPL ILRPH+KLTHQLPLVSAYSSFAR+GVGLG+E QRRRMDP TNEPLF
Sbjct: 479 VDPLHPDLVIDPLGILRPHSKLTHQLPLVSAYSSFARLGVGLGLEQQRRRMDPATNEPLF 538

Query: 540 THCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCK 599
           T+CTRDFIGTLDYIFYTADSL+VESLLELLDE+SLRKDTALPSPEWSSDHIALLAEFRCK
Sbjct: 539 TNCTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCK 598

Query: 600 PRARR 604
           PR RR
Sbjct: 599 PRPRR 603

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224139930|ref|XP_002323345.1| predicted protein [Populus trichocarpa] gi|118486421|gb|ABK95050.1| unknown [Populus trichocarpa] gi|222867975|gb|EEF05106.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225441541|ref|XP_002280990.1| PREDICTED: carbon catabolite repressor protein 4 homolog 1 [Vitis vinifera] gi|297739794|emb|CBI29976.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789110|emb|CAN73496.1| hypothetical protein VITISV_044263 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224088166|ref|XP_002308351.1| predicted protein [Populus trichocarpa] gi|222854327|gb|EEE91874.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449480842|ref|XP_004156011.1| PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356572657|ref|XP_003554483.1| PREDICTED: carbon catabolite repressor protein 4 homolog 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356505479|ref|XP_003521518.1| PREDICTED: carbon catabolite repressor protein 4 homolog 2-like [Glycine max] Back     alignment and taxonomy information
>gi|115481988|ref|NP_001064587.1| Os10g0412100 [Oryza sativa Japonica Group] gi|78708623|gb|ABB47598.1| endonuclease/exonuclease/phosphatase family protein, putative, expressed [Oryza sativa Japonica Group] gi|78708624|gb|ABB47599.1| endonuclease/exonuclease/phosphatase family protein, putative, expressed [Oryza sativa Japonica Group] gi|113639196|dbj|BAF26501.1| Os10g0412100 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|449457289|ref|XP_004146381.1| PREDICTED: LOW QUALITY PROTEIN: carbon catabolite repressor protein 4 homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
TAIR|locus:2076426602 AT3G58560 "AT3G58560" [Arabido 0.985 0.988 0.739 1.6e-244
TAIR|locus:2076446603 AT3G58580 "AT3G58580" [Arabido 0.991 0.993 0.721 7.4e-240
UNIPROTKB|E1C5L3549 CNOT6L "Uncharacterized protei 0.556 0.612 0.327 5.2e-43
ZFIN|ZDB-GENE-050522-302559 cnot6l "CCR4-NOT transcription 0.548 0.592 0.323 1.1e-42
UNIPROTKB|F1S5Q4566 CNOT6 "Uncharacterized protein 0.548 0.584 0.315 1.4e-42
UNIPROTKB|Q96LI5555 CNOT6L "CCR4-NOT transcription 0.559 0.609 0.330 1.8e-42
WB|WBGene00000376677 ccr-4 [Caenorhabditis elegans 0.561 0.500 0.319 1.5e-40
UNIPROTKB|E1BE73422 LOC100849029 "Uncharacterized 0.559 0.800 0.330 4.2e-40
MGI|MGI:2443154555 Cnot6l "CCR4-NOT transcription 0.559 0.609 0.328 5.3e-40
RGD|1309128553 Cnot6l "CCR4-NOT transcription 0.559 0.611 0.328 5.3e-40
TAIR|locus:2076426 AT3G58560 "AT3G58560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2356 (834.4 bits), Expect = 1.6e-244, P = 1.6e-244
 Identities = 449/607 (73%), Positives = 504/607 (83%)

Query:     1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
             MLSV+RVHLPS+IPIVGCELTPYVLLRRPD   +T+DVPESAP++GHFL+Y+W+R+QSD+
Sbjct:     1 MLSVIRVHLPSEIPIVGCELTPYVLLRRPDKTPSTDDVPESAPLEGHFLKYRWFRVQSDK 60

Query:    61 KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVXXXX 120
             KVA+CSVHPSE ATLQCLGC+K+K+PVAKSYHCS KCFSDAWQHHRVLH+RAASA     
Sbjct:    61 KVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAASAATEGN 120

Query:   121 XXXXXLFGRFNSTGSGVINXXXXXXXXXXXXXXXXXPLYPAAVTR---SGGETWFEVGRS 177
                     R NS+GSG                     +YP+A+T+   +GGET  EVGRS
Sbjct:   121 DEEE--LPRLNSSGSG-----SGVLSTSVSLTNGSSSVYPSAITQKTGAGGETLVEVGRS 173

Query:   178 KTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN 237
             KTYTP ADDI HVLKFECVVV+AETK  VG   T+LTSRVIPAPSPSPRRL  ++G+D+ 
Sbjct:   174 KTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLISISGTDVT 233

Query:   238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR 297
               GH+DS+GR  S GTF+VLSYNILSD YA+S+ YSYCP+WAL+W YRRQNLLREI+ YR
Sbjct:   234 --GHLDSNGRPLSMGTFTVLSYNILSDTYASSDIYSYCPTWALAWTYRRQNLLREIVKYR 291

Query:   298 ADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSH 357
             ADIVCLQEVQNDHFEEFF PELDKHGYQ L+KRKTNEV+ GN +TIDGCATFFRRDRFSH
Sbjct:   292 ADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFFRRDRFSH 351

Query:   358 VKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQL 417
             VKKYEVEFNKAAQSLT+AI+P +QKKNALNRLVKDNVALIVVLEAKF +Q AD PGKRQL
Sbjct:   352 VKKYEVEFNKAAQSLTEAIIPVSQKKNALNRLVKDNVALIVVLEAKFGSQAADNPGKRQL 411

Query:   418 LCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM 477
             LCVANTHVNV  ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFN+VP SAPH LLA+
Sbjct:   412 LCVANTHVNVPHELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASAPHTLLAV 471

Query:   478 GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEP 537
             GKV+P+HPDL VDPL ILRPH+KLTHQLPLVSAYS FA++G  +  E QRRR+DP ++EP
Sbjct:   472 GKVDPLHPDLMVDPLGILRPHSKLTHQLPLVSAYSQFAKMGGNVITEQQRRRLDPASSEP 531

Query:   538 LFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHIALLAEFR 597
             LFT+CTRDFIGTLDYIFYTA                 RKDTALPSPEWSSDHIALLAEFR
Sbjct:   532 LFTNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFR 591

Query:   598 CKPRARR 604
             C PRARR
Sbjct:   592 CMPRARR 598
GO:0008150 "biological_process" evidence=ND
GO:0016787 "hydrolase activity" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
TAIR|locus:2076446 AT3G58580 "AT3G58580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5L3 CNOT6L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-302 cnot6l "CCR4-NOT transcription complex, subunit 6-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5Q4 CNOT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q96LI5 CNOT6L "CCR4-NOT transcription complex subunit 6-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00000376 ccr-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BE73 LOC100849029 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2443154 Cnot6l "CCR4-NOT transcription complex, subunit 6-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309128 Cnot6l "CCR4-NOT transcription complex, subunit 6-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M2F8CCR4B_ARATH3, ., 1, ., 1, 3, ., 40.76770.99170.9933nono
Q8W0Z9CCR4A_ARATH3, ., 1, ., 1, 3, ., 40.77920.98500.9883yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13.40.979
3rd Layer3.1.130.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XVI0485
SubName- Full=Putative uncharacterized protein; (603 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
PLN03144606 PLN03144, PLN03144, Carbon catabolite repressor pr 0.0
cd09097329 cd09097, Deadenylase_CCR4, C-terminal deadenylase 1e-168
cd10312348 cd10312, Deadenylase_CCR4b, C-terminal deadenylase 3e-57
cd10313350 cd10313, Deadenylase_CCR4a, C-terminal deadenylase 3e-56
COG5239378 COG5239, CCR4, mRNA deadenylase, exonuclease subun 4e-50
cd09096280 cd09096, Deadenylase_nocturnin, C-terminal deadeny 2e-40
cd09082348 cd09082, Deadenylase, C-terminal deadenylase domai 7e-31
cd09083252 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphata 2e-12
cd08372241 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase 4e-11
PLN03158396 PLN03158, PLN03158, methionine aminopeptidase; Pro 4e-04
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information 
 Score = 1233 bits (3193), Expect = 0.0
 Identities = 512/608 (84%), Positives = 560/608 (92%), Gaps = 6/608 (0%)

Query: 1   MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDR 60
           MLSV+RVHLPSDIPIVGCELTPYVLLRRPD  +TT+DVPESAP+DG+FLRY+WYRIQSDR
Sbjct: 1   MLSVVRVHLPSDIPIVGCELTPYVLLRRPDGTLTTDDVPESAPLDGYFLRYRWYRIQSDR 60

Query: 61  KVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENG 120
           KVAVCSVHPSE ATLQC+GCVKAK+PV+KSYHCSPKCFSDAW+HHRVLH+RAASAV ENG
Sbjct: 61  KVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAASAVRENG 120

Query: 121 NEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAV---TRSGGETWFEVGRS 177
           NEE+ELFGRFNS+GSGV++ S SGSAS++SLTNGS PLYP+ +   T+ GGETW EVGRS
Sbjct: 121 NEEDELFGRFNSSGSGVLSTSDSGSASSASLTNGSVPLYPSGIEQKTQVGGETWIEVGRS 180

Query: 178 KTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN 237
           KTYTP+ADD+GHVLKFECVVVDAET LPVGHP ++LTSRVIPAPSP+PRRL  VNG D  
Sbjct: 181 KTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILTSRVIPAPSPTPRRLIQVNGLDG- 239

Query: 238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYR 297
            MGH+D DGR SS GTF+VLSYNILSD+YATS+ YSYCP WALSW YRRQNLLREI+GYR
Sbjct: 240 -MGHLDLDGRTSSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYR 298

Query: 298 ADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSH 357
           ADI+CLQEVQ+DHFEEFFAPELDKHGYQALYK+KT EVY GN + IDGCATFFRRDRFS 
Sbjct: 299 ADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSL 358

Query: 358 VKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQL 417
           VKKYEVEFNKAAQSLT+A++PSAQKK ALNRL+KDNVALIVVLEAKF NQGAD  GKRQL
Sbjct: 359 VKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFGNQGADNGGKRQL 418

Query: 418 LCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM 477
           LCVANTH++ +QELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPH LLA 
Sbjct: 419 LCVANTHIHANQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHCLLAT 478

Query: 478 GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFAR-IGVGLGMEHQRRRMDPTTNE 536
           GKV+P+HPDLAVDPL ILRP +KLTHQLPLVSAYSSFAR  G G G+E QRRRMDP TNE
Sbjct: 479 GKVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNE 538

Query: 537 PLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEF 596
           PLFT+CTRDFIGTLDYIFYTADSL+VESLLELLDE+SLRKDTALPSPEWSSDHIALLAEF
Sbjct: 539 PLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEF 598

Query: 597 RCKPRARR 604
           RCKPR RR
Sbjct: 599 RCKPRTRR 606

Length = 606
>gnl|CDD|197331 cd09097, Deadenylase_CCR4, C-terminal deadenylase domain of CCR4 and related domains Back     alignment and domain information
>gnl|CDD|197339 cd10312, Deadenylase_CCR4b, C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like Back     alignment and domain information
>gnl|CDD|197340 cd10313, Deadenylase_CCR4a, C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6 Back     alignment and domain information
>gnl|CDD|227564 COG5239, CCR4, mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|197330 cd09096, Deadenylase_nocturnin, C-terminal deadenylase domain of nocturnin and related domains Back     alignment and domain information
>gnl|CDD|197316 cd09082, Deadenylase, C-terminal deadenylase domain of CCR4, nocturnin, and related domains Back     alignment and domain information
>gnl|CDD|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1 Back     alignment and domain information
>gnl|CDD|197306 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily Back     alignment and domain information
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 604
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 100.0
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 100.0
KOG0620361 consensus Glucose-repressible alcohol dehydrogenas 100.0
KOG2338495 consensus Transcriptional effector CCR4-related pr 100.0
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 99.93
PRK11756268 exonuclease III; Provisional 99.92
COG3568259 ElsH Metal-dependent hydrolase [General function p 99.9
PRK05421263 hypothetical protein; Provisional 99.88
COG0708261 XthA Exonuclease III [DNA replication, recombinati 99.87
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 99.86
PTZ00297 1452 pantothenate kinase; Provisional 99.84
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 99.82
PRK13911250 exodeoxyribonuclease III; Provisional 99.81
KOG3873 422 consensus Sphingomyelinase family protein [Signal 99.77
smart00476276 DNaseIc deoxyribonuclease I. Deoxyribonuclease I c 99.75
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 99.72
KOG2756349 consensus Predicted Mg2+-dependent phosphodiestera 99.69
PLN03158396 methionine aminopeptidase; Provisional 99.66
PRK15251271 cytolethal distending toxin subunit CdtB; Provisio 99.55
COG2374798 Predicted extracellular nuclease [General function 99.42
COG3021309 Uncharacterized protein conserved in bacteria [Fun 99.39
KOG2738369 consensus Putative methionine aminopeptidase [Post 99.32
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 98.99
KOG0566 1080 consensus Inositol-1,4,5-triphosphate 5-phosphatas 97.97
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 97.61
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 96.72
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 96.17
KOG1294335 consensus Apurinic/apyrimidinic endonuclease and r 96.14
COG5411 460 Phosphatidylinositol 5-phosphate phosphatase [Sign 96.11
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 96.07
PTZ00312356 inositol-1,4,5-triphosphate 5-phosphatase; Provisi 92.11
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 90.04
KOG1976391 consensus Inositol polyphosphate 5-phosphatase, ty 89.77
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 80.42
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2e-146  Score=1208.66  Aligned_cols=602  Identities=85%  Similarity=1.358  Sum_probs=559.5

Q ss_pred             CccEEEEecCCCCceeceeeeeEEEEecCCCCCCCCCCCCCCCCCCceeEEEEEeeccccccccccCCCCCCceeecchh
Q 007421            1 MLSVLRVHLPSDIPIVGCELTPYVLLRRPDNAVTTEDVPESAPIDGHFLRYKWYRIQSDRKVAVCSVHPSEQATLQCLGC   80 (604)
Q Consensus         1 ~~~~~~~~l~~~~p~~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~r~~~~~~~~~c~~~~~~~~~l~cp~c   80 (604)
                      ||+|||||||+|||||||||+|||++||+||++++|||||++|++|+||||||||+|+++++++|++|++++|+||||+|
T Consensus         1 ~~~~~~~~l~~~~pi~g~~~~p~v~~~~~~~~~~~~d~~~~~~~~~~~~~~~w~r~~~~~~~~~c~~h~~~~a~lqCp~C   80 (606)
T PLN03144          1 MLSVVRVHLPSDIPIVGCELTPYVLLRRPDGTLTTDDVPESAPLDGYFLRYRWYRIQSDRKVAVCSVHPSEPATLQCVGC   80 (606)
T ss_pred             CeeEEEEEcCCCCCeeeeeeEEEEEEEcCCCCcCcccCcccCCCCcceEEEEEEecCCCccceeEeecCCCcccccCccc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hccCCCCCceeecChHHHHHhHHHHHHHHHhhhcccccCCCchhhhccCcCCCCCccccccCCCCCCCCCccCCCccccC
Q 007421           81 VKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYP  160 (604)
Q Consensus        81 ~~~~~~~~~~~fc~q~Cfk~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (604)
                      +|+|+++..||||||+|||++|++||.+|+.|+.+.+|+++|+++++++++++|+|....+++|+.++.+++|||+++||
T Consensus        81 ~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (606)
T PLN03144         81 VKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAASAVRENGNEEDELFGRFNSSGSGVLSTSDSGSASSASLTNGSVPLYP  160 (606)
T ss_pred             hhcCCCcCcceeeCHHHHHHHHHHHHHHHHHhhhhhcccCccccccccccCCCccccccccccccccccccccCcccccc
Confidence            99999878899999999999999999999999888899999999999999999999999889888888899999999999


Q ss_pred             cccccCC---CCceEEeccceeecCCccCCCceEEEEEEEeeCCcCCCCCCcceeeeccccCCCCCCCCceeeeCCCCCC
Q 007421          161 AAVTRSG---GETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMN  237 (604)
Q Consensus       161 ~~~~~~~---~~~w~~v~~~~~y~P~~~diG~~l~l~~~~~~~~~~~~~g~~~~i~~~~v~p~p~p~~R~~i~~~~~~~~  237 (604)
                      .+..+..   +++|++||++++|||+++|||+.|||||+|+++..+.+.|.+.+++|.+|+|+|.|++|+||+++.  .+
T Consensus       161 ~~~~~~~~~~~~~w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~~~~~~~~~~~~t~~v~~~p~p~~R~~~~~~~--~~  238 (606)
T PLN03144        161 SGIEQKTQVGGETWIEVGRSKTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILTSRVIPAPSPTPRRLIQVNG--LD  238 (606)
T ss_pred             cccccccCCCCCceEEeCCCccccCChhhCCceEEEEEEEcccccCCCCccceeecccceecCCCCCCcceEEecc--cc
Confidence            9987777   899999999999999999999999999999999987888888899999999999999999999876  34


Q ss_pred             cccccCCCCCCCCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHH
Q 007421          238 MMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAP  317 (604)
Q Consensus       238 ~~~~~~~~~~~~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~  317 (604)
                      .++|++.+++..+..+|||||||||++.|+++++|+|||+|+|+|+||+++|+++|..++|||||||||+.++|+++|.+
T Consensus       239 ~~~~~~~~~~~~~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~lIl~EI~~~~aDIICLQEV~~~~~~d~~~p  318 (606)
T PLN03144        239 GMGHLDLDGRTSSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLLREIVGYRADILCLQEVQSDHFEEFFAP  318 (606)
T ss_pred             cccccccccccCCCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHHHHHHHHhcCCCEEEEeecCHHHHHHHHHh
Confidence            56677777777888999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCeEEEEecCCcccCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEE
Q 007421          318 ELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALI  397 (604)
Q Consensus       318 ~L~~~GY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~  397 (604)
                      .|.++||.++|..|++.++.++....||||||||++||++++.+.|+|++.++++++...++.++.++++|++++|+|++
T Consensus       319 ~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~~lslt~~~~~s~~~~~~l~Rl~kdNVAli  398 (606)
T PLN03144        319 ELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALI  398 (606)
T ss_pred             hhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccchhhccCccccccccchhhhhhhccCcEEEE
Confidence            99999999999998776665666678999999999999999999999999999888877666678889999999999999


Q ss_pred             EEEeeeecCCCCCCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhHhc
Q 007421          398 VVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAM  477 (604)
Q Consensus       398 ~~Le~k~~~~~~~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL~~  477 (604)
                      ++|+.+.+.......+.++.|+|+||||+|+|.+.++|+.|+..|++.|+++....++|+|||||||+.|+|++|++|++
T Consensus       399 v~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S~vy~lLt~  478 (606)
T PLN03144        399 VVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHCLLAT  478 (606)
T ss_pred             EEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCChhhhhhhc
Confidence            99999754322222234568999999999999999999999999999999987767899999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCcCCCCccccCCCCcchhhhhhh-hccCCccccccccCCCCCCCCccccccCCCCcceeEEEEe
Q 007421          478 GKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFAR-IGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYT  556 (604)
Q Consensus       478 G~v~~~h~d~~~~~~~~~~~~~~l~~~~~L~Say~~~~~-~~~g~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDYIf~s  556 (604)
                      |.++.+|+||..++++.+++..++.|+|+|.|||..+.+ .|.+.+++.+..++|+.+++|.||||+++|.++||||||+
T Consensus       479 G~v~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~~r~~~~~geP~fTNyt~~F~gtlDYIfys  558 (606)
T PLN03144        479 GKVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRRMDPATNEPLFTNCTRDFIGTLDYIFYT  558 (606)
T ss_pred             CCcCCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhhhccccccCCCCceeecCCcceeEEEEEEc
Confidence            999999999999999888866899999999999998743 3345567889999999999999999999999999999999


Q ss_pred             CCCceeeeeeccCChhhhccCCCCCCCCCCCCcccEEEEEEEeecCCC
Q 007421          557 ADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR  604 (604)
Q Consensus       557 ~~~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDHipl~aef~~k~~~~~  604 (604)
                      ++.|.+.+++++++++++.+..||||.+|||||+||+|||+|++|.||
T Consensus       559 ~~~L~v~~vL~lp~e~~l~~~~gLPn~~~PSDHI~L~AeF~~~~~~~~  606 (606)
T PLN03144        559 ADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPRTRR  606 (606)
T ss_pred             CCCceEEeecCCCCHHHhcccCCCCCCCCCCccccEeEEEEeccCCCC
Confidence            989999999999999999999999999999999999999999999886

>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription] Back     alignment and domain information
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription] Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>PRK11756 exonuclease III; Provisional Back     alignment and domain information
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms] Back     alignment and domain information
>smart00476 DNaseIc deoxyribonuclease I Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional Back     alignment and domain information
>COG2374 Predicted extracellular nuclease [General function prediction only] Back     alignment and domain information
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair] Back     alignment and domain information
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism] Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
3ngq_A398 Crystal Structure Of The Human Cnot6l Nuclease Doma 1e-43
3ngn_A398 Crystal Structure Of The Human Cnot6l Nuclease Doma 2e-43
4b8c_D727 Nuclease Module Of The Yeast Ccr4-Not Complex Lengt 5e-42
>pdb|3NGQ|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain Length = 398 Back     alignment and structure 
Iteration: 1

 Score =  174 bits (440), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 176/370 (47%), Gaps = 37/370 (10%)
Query: 247 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 306
           +I  + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+   ADI+ LQEV
Sbjct: 25  QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEV 84
Query: 307 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 364
           + + +   F P L + GY   +  K +   +       +DGCA FF+ ++F+ V+K+ VE
Sbjct: 85  ETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 144
Query: 365 FNKAAQSLTDAILPSAQKKNALNR-LVKDNVALIVVLEAKFSNQGADT----PGKRQLLC 419
           FN+ A + +D        +  LNR + KDN+ + VVLE      GA         +QLL 
Sbjct: 145 FNQVAMANSDG------SEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLI 198
Query: 420 VANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA------------DIPMLVCGDFNSVP 467
           VAN H++   E  DVKL Q    +  ++ I   A             IP+++C D NS+P
Sbjct: 199 VANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 258
Query: 468 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQR 527
            S     L+ G V   H D        LR +  L +        SS  RI  G  ++   
Sbjct: 259 DSGVVEYLSNGGVADNHKDFKE-----LRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY 313
Query: 528 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPSPEW 585
                  N   +T+ T DF G +DYIFY+                   ++  T  P P  
Sbjct: 314 E-----NNLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHI 368
Query: 586 SSDHIALLAE 595
            SDH +LL +
Sbjct: 369 PSDHFSLLTQ 378
>pdb|3NGN|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain In Complex With Amp Length = 398 Back     alignment and structure
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 6e-90
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 3e-39
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 2e-32
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 2e-22
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 5e-18
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 7e-18
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 2e-17
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 4e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Length = 398 Back     alignment and structure
 Score =  283 bits (723), Expect = 6e-90
 Identities = 122/413 (29%), Positives = 188/413 (45%), Gaps = 50/413 (12%)

Query: 212 LLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES 271
           +L +  +      PR               +    +I  + +F+V+ YN+L D YAT + 
Sbjct: 1   MLDNLAVHPEQLPPRPWIT-----------LKERDQILPSASFTVMCYNVLCDKYATRQL 49

Query: 272 YSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 331
           Y YCPSWAL+W YR++ ++ EI+   ADI+ LQEV+ + +   F P L + GY   +  K
Sbjct: 50  YGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPK 109

Query: 332 TNE--VYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRL 389
           +    +       +DGCA FF+ ++F+ V+K+ VEFN+ A +       S   +  LNR+
Sbjct: 110 SRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMA------NSDGSEAMLNRV 163

Query: 390 V-KDNVALIVVLEAKFSNQGADT----PGKRQLLCVANTHVNVHQELKDVKLWQVHTLLK 444
           + KDN+ + VVLE      GA         +QLL VAN H++   E  DVKL Q    + 
Sbjct: 164 MTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVS 223

Query: 445 GLEKIAASA------------DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPL 492
            ++ I   A             IP+++C D NS+P S     L+ G V   H D      
Sbjct: 224 EVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELR- 282

Query: 493 TILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQ-RRRMDPTTNEPLFTHCTRDFIGTLD 551
                     +   L++   +         + H  + +     N   +T+ T DF G +D
Sbjct: 283 ----------YNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKGVID 332

Query: 552 YIFYTADSLSVESLLELLDEDSL--RKDTALPSPEWSSDHIALLAEFRCKPRA 602
           YIFY+   ++VE +L  LD   L     T  P P   SDH +LL +    P  
Sbjct: 333 YIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHPPL 385
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298 Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267 Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Length = 257 Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Length = 301 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306 Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Length = 317 Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query604
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 100.0
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 100.0
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 99.97
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 99.97
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 99.97
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 99.97
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 99.96
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.96
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.96
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 99.95
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 99.95
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 99.94
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 99.93
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 99.91
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 99.91
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 99.89
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 99.88
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 99.87
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 99.87
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 99.87
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 99.86
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 99.85
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 99.84
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 99.83
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 99.73
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 99.72
1sr4_B261 CDT B, cytolethal distending toxin protein B; bact 99.67
2f1n_A262 CDT B, cytolethal distending toxin subunit B; E.co 99.67
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 99.56
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 99.3
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 99.05
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 98.98
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 94.8
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 94.73
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 94.48
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 94.43
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 94.13
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 88.28
3qww_A433 SET and MYND domain-containing protein 2; methyltr 87.95
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 86.14
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
Probab=100.00  E-value=4.3e-66  Score=554.61  Aligned_cols=345  Identities=36%  Similarity=0.626  Sum_probs=282.9

Q ss_pred             CCCCCCCCceeeeCCCCCCcccccCCCCCCCCCCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCC
Q 007421          219 PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA  298 (604)
Q Consensus       219 p~p~p~~R~~i~~~~~~~~~~~~~~~~~~~~~~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~a  298 (604)
                      +.|+|+.|+||++...           .+..+...||||||||+++.|+++++|+|||++.++|.+|++.|+++|..++|
T Consensus         8 ~~~~p~~R~wi~~~~~-----------~~~~~~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~p   76 (398)
T 3ngq_A            8 HPEQLPPRPWITLKER-----------DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDA   76 (398)
T ss_dssp             ----CCCCCEEECSCC-----------C--CCCEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCcceECCCC-----------CCCCCCCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCC
Confidence            5667889999998651           12234568999999999999999999999999999999999999999999999


Q ss_pred             cEEEEEccchhHHHHHhHHHHhhCCCeEEEEecCCcccC--CCCCCccceEEeeecCceEEeEeEEEeechhhccccccc
Q 007421          299 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYN--GNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAI  376 (604)
Q Consensus       299 DIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~k~~~~~~--~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~  376 (604)
                      ||||||||...++.+++.+.|..+||.++|..|++...+  .+++..+|||||||+++|++++...++|++....     
T Consensus        77 DIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~-----  151 (398)
T 3ngq_A           77 DIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMA-----  151 (398)
T ss_dssp             SEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHH-----
T ss_pred             CEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCccc-----
Confidence            999999999988888889999999999999887543111  1124578999999999999999999999876432     


Q ss_pred             Ccchhhhhhhhhhc-cCceEEEEEEeeeecCCCC----CCCCCceeEEEEeeccccCCCCchhHHHHHHHHHHHHHHHhh
Q 007421          377 LPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGA----DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA  451 (604)
Q Consensus       377 ~~~~~~~~~~~R~~-~~nval~~~Le~k~~~~~~----~~~~~g~~l~V~NTHL~~~p~~~~vR~~Q~~~Ll~~l~~~~~  451 (604)
                       ++.+|+++++|++ ++|++++++|+.+.+....    ....+++.|+|+||||+|+|.+.++|+.|+..|++.|+++.+
T Consensus       152 -~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~  230 (398)
T 3ngq_A          152 -NSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILE  230 (398)
T ss_dssp             -TCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             -ccccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             2345788899998 5899999999986321000    001246789999999999999999999999999999998853


Q ss_pred             c------------CCCcEEEEccCCCCCCChhHHhHhcCCCCCCCCCCCCCCCCCc----CC-------CCccccCCCCc
Q 007421          452 S------------ADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTIL----RP-------HTKLTHQLPLV  508 (604)
Q Consensus       452 ~------------~~~pvIlcGDFNs~p~S~~~~lL~~G~v~~~h~d~~~~~~~~~----~~-------~~~l~~~~~L~  508 (604)
                      +            .+.|+|||||||+.|+|++|++|++|.++.+|+||....|+..    ..       ...+.|+|+|.
T Consensus       231 ~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~  310 (398)
T 3ngq_A          231 KASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLK  310 (398)
T ss_dssp             C-------------CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEE
T ss_pred             HhhcccccccccCCCCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCcccc
Confidence            2            3579999999999999999999999999999999986554431    11       13588999999


Q ss_pred             chhhhhhhhccCCccccccccCCCCCCCCccccccCCCCcceeEEEEeCCCceeeeeeccCChhhhc--cCCCCCCCCCC
Q 007421          509 SAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLR--KDTALPSPEWS  586 (604)
Q Consensus       509 Say~~~~~~~~g~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDYIf~s~~~l~v~~~~~~~~~~~~~--~~~~lP~~~~p  586 (604)
                      |||..                     ++|+|||||.+|.|+||||||+++.|.+.++++.++++++.  +..||||.+||
T Consensus       311 SAy~~---------------------~~~~fTnyt~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l~~~~~~glP~~~~P  369 (398)
T 3ngq_A          311 SAYEN---------------------NLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIP  369 (398)
T ss_dssp             ETTTT---------------------TSSSCSEECSSCEECCEEEEEETTTEEEEEEECCCCHHHHHHTTCCSSCBTTBC
T ss_pred             ccccC---------------------CCCCceeccCCcCCceeEEEEeCCceEEEeecCCCCHHHhccccccCCCCCCCC
Confidence            99963                     37899999999999999999999889999999888888874  68999999999


Q ss_pred             CCcccEEEEEEEeec
Q 007421          587 SDHIALLAEFRCKPR  601 (604)
Q Consensus       587 SDHipl~aef~~k~~  601 (604)
                      |||+||+|||+|+++
T Consensus       370 SDHi~l~a~f~~~~~  384 (398)
T 3ngq_A          370 SDHFSLLTQLELHPP  384 (398)
T ss_dssp             SSBCCEEEEEEECCC
T ss_pred             CcchheeEEEEEccC
Confidence            999999999999875
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Back     alignment and structure
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Back     alignment and structure
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 604
d2ddra1299 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras 8e-16
d1zwxa1293 d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera 1e-14
d1sr4b_261 d.151.1.1 (B:) Cytolethal distending toxin subunit 5e-04
d2a40b1260 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos 0.001
d2f1na1250 d.151.1.1 (A:1-250) Cytolethal distending toxin su 0.002
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Bacillus cereus [TaxId: 1396]

 Score = 76.2 bits (185), Expect = 8e-16
 Identities = 43/356 (12%), Positives = 86/356 (24%), Gaps = 71/356 (19%)

Query: 253 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFE 312
           T  V+++N+         ++            R   +         D+V L EV ++   
Sbjct: 3   TLKVMTHNVYMLSTNLYPNWG--------QTERADLIGAADYIKNQDVVILNEVFDNSAS 54

Query: 313 EFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSL 372
           +     L K                G     +   T       +         +K   + 
Sbjct: 55  DRLLGNLKKEYPNQTA-------VLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAE 107

Query: 373 TDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVH---- 428
               + +            DN++    +  K            + + V  TH+       
Sbjct: 108 KIQYVFAKGCG-------PDNLSNKGFVYTKIKKND-------RFVHVIGTHLQAEDSMC 153

Query: 429 --QELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPD 486
                  V+  Q+  +   ++      +  +L+ GD N    +A +   +          
Sbjct: 154 GKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYA------- 206

Query: 487 LAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDF 546
                L    P                                 D TTN     +     
Sbjct: 207 SMFKTLNASVPS------------------------YTGHTATWDATTNSIAKYNFPDSP 242

Query: 547 IGTLDYIFYTADSLSVESLLELLDEDSLRKDTAL-----PSPEWSSDHIALLAEFR 597
              LDYI  + D  +   +   + +    + T        +    SDH  + A   
Sbjct: 243 AEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATIS 298
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293 Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261 Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Length = 260 Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query604
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 99.95
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 99.94
d2a40b1260 Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 99.85
d1vyba_236 Endonuclease domain of LINE-1 reverse transcriptas 99.84
d1sr4b_261 Cytolethal distending toxin subunit B {Haemophilus 99.78
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 99.71
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 99.71
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 99.7
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 99.68
d1akoa_268 DNA-repair enzyme exonuclease III {Escherichia col 99.62
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 99.45
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 97.01
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 96.98
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 96.77
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Listeria ivanovii [TaxId: 1638]

Probab=99.95  E-value=3.8e-27  Score=235.45  Aligned_cols=188  Identities=16%  Similarity=0.148  Sum_probs=121.3

Q ss_pred             CCcEEEEEecccCCcCCCCCCCCCCCccccChHHHHHHHHHHHHhCCCcEEEEEccchhHHHHHhHHHHhhCCCeEEEEe
Q 007421          251 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR  330 (604)
Q Consensus       251 ~~~~rVmSyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~I~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~GY~~~~~~  330 (604)
                      ++.||||||||+....   ..+     ....+..|.++|.++|..++|||||||||....+.+.+...+.. .|...+..
T Consensus         2 ~~~lki~s~Nv~~~~~---~~~-----~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~-~~~~~~~~   72 (293)
T d1zwxa1           2 PGNFKITSHNVYLFSR---NIY-----PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLRE-MYPHQTPV   72 (293)
T ss_dssp             CCSCEEEEEEEEECCT---TTS-----TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTT-TCCEECCC
T ss_pred             CCCCEEEEEecCcCcc---ccC-----CCcCHHHHHHHHHHHHHhcCCCEEEEEccCCcchHHHHHHHHhh-hccceehh
Confidence            4679999999975321   111     12346789999999999999999999999887766666666643 33332221


Q ss_pred             cCCcc---------cCCCCCCccceEEeeecCceEEeEeEEEeechhhcccccccCcchhhhhhhhhhccCceEEEEEEe
Q 007421          331 KTNEV---------YNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLE  401 (604)
Q Consensus       331 k~~~~---------~~~~~~~~~G~Aif~r~srf~lv~~~~i~f~~~~~~~~~~~~~~~~~~~~~~R~~~~nval~~~Le  401 (604)
                      .....         .........|++||   +|+++.....+.+.....               ..+. ..+.++.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~g~~il---sr~pi~~~~~~~~~~~~~---------------~~~~-~~~~~~~~~~~  133 (293)
T d1zwxa1          73 IGRSKHGWDKTEGNYSNFALEDGGVAVV---SQWPIVEKSQHIFQRGGG---------------ADRL-SNKGFAYVKIM  133 (293)
T ss_dssp             TTSCSTTCSEEEC-----CCBCCCCEEE---ESSCEEEEEEEECSCCCG---------------GGGG-BCCEEEEEEEE
T ss_pred             cccccccccccccccccccccccceEEE---eccCcccceeeeeecccc---------------cccc-ccceEEEEEEe
Confidence            11100         00112234689999   678888776554432110               0011 11223333333


Q ss_pred             eeecCCCCCCCCCceeEEEEeeccccCCC------CchhHHHHHHHHHHHHHHHhhcCCCcEEEEccCCCCCCChhHHhH
Q 007421          402 AKFSNQGADTPGKRQLLCVANTHVNVHQE------LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALL  475 (604)
Q Consensus       402 ~k~~~~~~~~~~~g~~l~V~NTHL~~~p~------~~~vR~~Q~~~Ll~~l~~~~~~~~~pvIlcGDFNs~p~S~~~~lL  475 (604)
                      .           .++.++|+||||.+...      ....|..|+..+++.+.+.....+.|+|||||||+.|.+..++.|
T Consensus       134 ~-----------~~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~  202 (293)
T d1zwxa1         134 K-----------NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDM  202 (293)
T ss_dssp             E-----------TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHH
T ss_pred             c-----------CCceEEEEEeeeeccCCccchhHHHHHHHHHHHHhhhhhhhhccCCCCcEEEEeecCCCCCchHHHHH
Confidence            3           36789999999976532      234688899888888887655567899999999999999998766


Q ss_pred             hc
Q 007421          476 AM  477 (604)
Q Consensus       476 ~~  477 (604)
                      .+
T Consensus       203 ~~  204 (293)
T d1zwxa1         203 LK  204 (293)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure