Citrus Sinensis ID: 007425
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 604 | ||||||
| 359494826 | 617 | PREDICTED: DUF246 domain-containing prot | 0.963 | 0.943 | 0.733 | 0.0 | |
| 297741763 | 717 | unnamed protein product [Vitis vinifera] | 0.902 | 0.760 | 0.762 | 0.0 | |
| 255554775 | 642 | conserved hypothetical protein [Ricinus | 0.918 | 0.864 | 0.759 | 0.0 | |
| 356564474 | 579 | PREDICTED: DUF246 domain-containing prot | 0.900 | 0.939 | 0.752 | 0.0 | |
| 356520091 | 583 | PREDICTED: DUF246 domain-containing prot | 0.900 | 0.933 | 0.753 | 0.0 | |
| 224117960 | 467 | predicted protein [Populus trichocarpa] | 0.769 | 0.995 | 0.830 | 0.0 | |
| 224113753 | 465 | predicted protein [Populus trichocarpa] | 0.769 | 1.0 | 0.830 | 0.0 | |
| 449455459 | 672 | PREDICTED: DUF246 domain-containing prot | 0.956 | 0.860 | 0.648 | 0.0 | |
| 357480375 | 620 | hypothetical protein MTR_4g132590 [Medic | 0.937 | 0.912 | 0.720 | 0.0 | |
| 449513539 | 672 | PREDICTED: DUF246 domain-containing prot | 0.956 | 0.860 | 0.651 | 0.0 |
| >gi|359494826|ref|XP_002271717.2| PREDICTED: DUF246 domain-containing protein At1g04910-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/590 (73%), Positives = 501/590 (84%), Gaps = 8/590 (1%)
Query: 18 DRSSASNFFSGSLSTPSSRQSSPRMEPSRFLKKMKRKGEKAWYKRKRVKSLVGVIGLICF 77
D S S S SLS S S + E + + +RK + W++R RVK +VGVIG +
Sbjct: 33 DSGSGSAQESSSLSRLHSAHRSSQDE--KIHPRARRKVGRVWHRR-RVKVIVGVIGSVGL 89
Query: 78 FFVVNWFMLVRL--QYHGRKTNA-FVNSSSVSVKKELKKFGKGKRSQYGVYGRMLALAAH 134
FF+ NW+ML RL HG K+++ NSS +SV+ LKK KG+R Q ++ RMLALAAH
Sbjct: 90 FFLTNWWMLSRLYDAGHGVKSSSRIANSSLISVQGGLKKPNKGERPQ--IHSRMLALAAH 147
Query: 135 ALAEGQNKREPKDLWREPVVPASAWMPCADQRNWEPSGGNNGYILVTANGGMNQQRVAIC 194
ALA+GQNK EPK LW EPVVPAS W PCA QRNWEPS GNNGYIL+TANGG+NQQRVA+C
Sbjct: 148 ALADGQNKPEPKGLWEEPVVPASVWRPCAHQRNWEPSEGNNGYILITANGGINQQRVAVC 207
Query: 195 NAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIRMVKELPNKLQSL 254
NAVV+AR LNATLVVPKF++SSVWRDVSQFSDIYQEEHF+NYLTPDIR+VKELP +LQSL
Sbjct: 208 NAVVIARFLNATLVVPKFLFSSVWRDVSQFSDIYQEEHFVNYLTPDIRIVKELPKELQSL 267
Query: 255 DLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRLRC 314
DLEAIGSVVTDVDI KESK SFY KNI+PILL+ VVH +GFGNRLAFDPIPF+LQRLRC
Sbjct: 268 DLEAIGSVVTDVDIMKESKLSFYRKNILPILLQKRVVHFVGFGNRLAFDPIPFELQRLRC 327
Query: 315 RCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRY 374
RCNFHAL+F PKIQETGALLL+++R++ SGPLDHYLVGP+A+S MK K+ ++AK+SRY
Sbjct: 328 RCNFHALRFVPKIQETGALLLKKMRQNVRRSGPLDHYLVGPFAESTMKGKKNRAAKSSRY 387
Query: 375 LAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGL 434
LA+HLRFEIDMVAHSLC+FGGGEEERQELE YREIHFPALA LKKTTKLPSP E+R++G
Sbjct: 388 LALHLRFEIDMVAHSLCDFGGGEEERQELEAYREIHFPALALLKKTTKLPSPEELRADGQ 447
Query: 435 CPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELE 494
CPLTPEE VLML ALGFNRKTH+F+AG+QIYGG RL AL +LYP LVTKENLLS++E+E
Sbjct: 448 CPLTPEETVLMLVALGFNRKTHIFLAGSQIYGGRSRLAALTTLYPNLVTKENLLSSSEIE 507
Query: 495 PFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPTIRPNKRRLAA 554
PFKNFSSQLAALDFIGCTAA+AFA+TDSGSQLSSLVSGYRIYYGGG++PT+RPNKRRLA+
Sbjct: 508 PFKNFSSQLAALDFIGCTAADAFAITDSGSQLSSLVSGYRIYYGGGRLPTVRPNKRRLAS 567
Query: 555 IFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMCPTD 604
IF+KNSTIEW +FE+RVRKAVRQTK I RS RSVYR PRC+ECMC T+
Sbjct: 568 IFLKNSTIEWSMFEKRVRKAVRQTKTIHRRSISRSVYRNPRCRECMCTTE 617
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741763|emb|CBI32992.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|255554775|ref|XP_002518425.1| conserved hypothetical protein [Ricinus communis] gi|223542270|gb|EEF43812.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|356564474|ref|XP_003550479.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|356520091|ref|XP_003528699.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Glycine max] | Back alignment and taxonomy information |
|---|
| >gi|224117960|ref|XP_002331523.1| predicted protein [Populus trichocarpa] gi|222873747|gb|EEF10878.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|224113753|ref|XP_002316562.1| predicted protein [Populus trichocarpa] gi|222859627|gb|EEE97174.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|449455459|ref|XP_004145470.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
| >gi|357480375|ref|XP_003610473.1| hypothetical protein MTR_4g132590 [Medicago truncatula] gi|357497961|ref|XP_003619269.1| DUF246 domain-containing protein [Medicago truncatula] gi|355494284|gb|AES75487.1| DUF246 domain-containing protein [Medicago truncatula] gi|355511528|gb|AES92670.1| hypothetical protein MTR_4g132590 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
| >gi|449513539|ref|XP_004164352.1| PREDICTED: DUF246 domain-containing protein At1g04910-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 604 | ||||||
| TAIR|locus:2027129 | 652 | AT1G62330 [Arabidopsis thalian | 0.798 | 0.739 | 0.730 | 1.2e-199 | |
| TAIR|locus:2008935 | 590 | AT1G11990 [Arabidopsis thalian | 0.490 | 0.501 | 0.567 | 5.7e-178 | |
| TAIR|locus:2029984 | 611 | AT1G29200 [Arabidopsis thalian | 0.894 | 0.883 | 0.493 | 1.7e-137 | |
| TAIR|locus:2079281 | 557 | AT3G26370 [Arabidopsis thalian | 0.337 | 0.366 | 0.369 | 4.7e-72 | |
| TAIR|locus:2049527 | 567 | AT2G01480 [Arabidopsis thalian | 0.394 | 0.419 | 0.353 | 1.2e-71 | |
| TAIR|locus:2168297 | 504 | AT5G65470 [Arabidopsis thalian | 0.754 | 0.904 | 0.349 | 2.4e-69 | |
| TAIR|locus:2130938 | 549 | AT4G16650 [Arabidopsis thalian | 0.334 | 0.367 | 0.387 | 3.4e-68 | |
| TAIR|locus:2006852 | 562 | AT1G14970 [Arabidopsis thalian | 0.395 | 0.425 | 0.348 | 4.4e-68 | |
| TAIR|locus:2121909 | 519 | AT4G24530 [Arabidopsis thalian | 0.756 | 0.880 | 0.335 | 1.9e-67 | |
| TAIR|locus:2014666 | 568 | AT1G35510 [Arabidopsis thalian | 0.322 | 0.343 | 0.422 | 2.2e-67 |
| TAIR|locus:2027129 AT1G62330 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1876 (665.4 bits), Expect = 1.2e-199, Sum P(2) = 1.2e-199
Identities = 353/483 (73%), Positives = 400/483 (82%)
Query: 123 GVYGRMLALAAHALAEGQNKREPKDLWREPVVPASAWMPCADQRNWEPSGGNNGYILVTA 182
G YGR+LA AAHALAEGQNK EPK+LWREP A AW PCADQR+W+PS G NGYI+VTA
Sbjct: 170 GTYGRLLAYAAHALAEGQNKLEPKELWREPKDQALAWKPCADQRSWKPSDGKNGYIMVTA 229
Query: 183 NGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINYLTPDIR 242
NGG+NQQRVA+CN VV+AR+LNATLV+PKFM+S VW D SQF DIYQ EHFI YL+PDIR
Sbjct: 230 NGGINQQRVAVCNIVVVARMLNATLVIPKFMFSDVWTDASQFGDIYQVEHFIKYLSPDIR 289
Query: 243 MVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGFGNRLAF 302
+VK+LP +LQSLDLEAIGSVVTD+D+ KE+KP FY+K+I+P+LL+N VVH LGFGNRLAF
Sbjct: 290 IVKKLPKELQSLDLEAIGSVVTDIDVMKEAKPGFYMKHILPLLLKNRVVHFLGFGNRLAF 349
Query: 303 DPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGP-YADSIM 361
DPIPF+LQRLRCRCNFHAL F PKIQETGA+L+RRLR H P+D YLVGP +A I+
Sbjct: 350 DPIPFELQRLRCRCNFHALNFVPKIQETGAILVRRLRDSGSHLAPVDPYLVGPKFASFIL 409
Query: 362 KEKRGQSAKASRYLAIHLRFEIDMVAHSLCXXXXXXXXXXXXXXXXXIHFPALAHLKKTT 421
+K G KAS+YLA+HLRFEIDMVAHSLC HFP LA+L KT
Sbjct: 410 DKKAGPLHKASKYLAVHLRFEIDMVAHSLCYFGGGDAEKAELDAYREKHFPTLANLTKTQ 469
Query: 422 KLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYL 481
K+PSP ++R+EGLCPL+PEEAVLMLA LGF+RKT VFVAGA IYGG +RL AL SLYP L
Sbjct: 470 KMPSPDDLRTEGLCPLSPEEAVLMLAGLGFSRKTRVFVAGANIYGGNKRLAALTSLYPNL 529
Query: 482 VTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGK 541
VTKEN+LS TELEPFKNFSSQLA LDFI C A++AFAMTDSGSQLSSLVSGYRIYYG GK
Sbjct: 530 VTKENVLSQTELEPFKNFSSQLAVLDFIACAASDAFAMTDSGSQLSSLVSGYRIYYGAGK 589
Query: 542 MPTIRPNKRRLAAIFVKNSTIEWKVFEQRVRKAVRQTKHIQSRSKGRSVYRYPRCKECMC 601
MPTIRPNKRR + I +KN+TIEWKVFEQRVRK VRQTKH+ R GRSVYRYPRCKECMC
Sbjct: 590 MPTIRPNKRRFSDILLKNNTIEWKVFEQRVRKTVRQTKHVLVRPTGRSVYRYPRCKECMC 649
Query: 602 PTD 604
D
Sbjct: 650 NED 652
|
|
| TAIR|locus:2008935 AT1G11990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2029984 AT1G29200 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2079281 AT3G26370 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2049527 AT2G01480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2168297 AT5G65470 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2130938 AT4G16650 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2006852 AT1G14970 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2121909 AT4G24530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2014666 AT1G35510 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| gw1.XI.1485.1 | hypothetical protein (462 aa) | |||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 604 | |||
| cd11299 | 290 | cd11299, O-FucT_plant, GDP-fucose protein O-fucosy | 1e-137 | |
| pfam10250 | 315 | pfam10250, O-FucT, GDP-fucose protein O-fucosyltra | 1e-107 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 7e-05 | |
| cd11296 | 206 | cd11296, O-FucT_like, GDP-fucose protein O-fucosyl | 3e-04 |
| >gnl|CDD|211385 cd11299, O-FucT_plant, GDP-fucose protein O-fucosyltransferase, plant specific subfamily | Back alignment and domain information |
|---|
Score = 402 bits (1035), Expect = e-137
Identities = 153/365 (41%), Positives = 204/365 (55%), Gaps = 76/365 (20%)
Query: 177 YILVTANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQFSDIYQEEHFINY 236
Y+LV+ANGG+NQQR IC+AV +ARLLNATLV+P+ +SVW D S+F DIY +HFI
Sbjct: 1 YLLVSANGGLNQQRSQICDAVAVARLLNATLVLPELDKNSVWGDSSKFGDIYDVDHFIKS 60
Query: 237 LTPDIRMVKELPNKLQSLDLEAIGSVVTDVDIPKESKPSFYLKNIIPILLRNGVVHLLGF 296
L D+R+VK+LP +L S E +T +P S PS+YL+ ++P+L ++GV+ L F
Sbjct: 61 LKDDVRVVKKLPEELASKKPE-----ITVKRVPSRSSPSYYLEEVLPLLKKHGVIRLAPF 115
Query: 297 GNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPY 356
+RLA D +P ++QRLRCR NFHAL+F P+I+E G L+ RLR+ G
Sbjct: 116 DSRLANDLLPPEIQRLRCRVNFHALRFVPEIEELGDKLVDRLREAGG------------- 162
Query: 357 ADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAH 416
+LA+HLRFE DM+A S C
Sbjct: 163 ----------------PFLALHLRFEKDMLAFSGC------------------------- 181
Query: 417 LKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNS 476
G CPLTPEE L+L ALGF R T +++A +IYGG RRL L S
Sbjct: 182 ----------------GKCPLTPEEVGLLLRALGFPRSTRIYLAAGEIYGGERRLDPLRS 225
Query: 477 LYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIY 536
++P L TKE L +A EL PF SS+LAALD+I C ++ F T G + V+G+R Y
Sbjct: 226 IFPNLYTKETLATAEELAPFSGHSSRLAALDYIVCLESDVFVPTYGG-NFAKAVAGHRRY 284
Query: 537 YGGGK 541
G K
Sbjct: 285 LGHRK 289
|
Some members of this plant-specific family of O-fucosyltransferases have been annotated as auxin-independent growth promotors. The function of the protein seems unclear. O-fucosyltransferase-like proteins are GDP-fucose dependent enzymes with similarities to the family 1 glycosyltransferases (GT1). They are soluble ER proteins that may be proteolytically cleaved from a membrane-associated preprotein, and are involved in the O-fucosylation of protein substrates, the core fucosylation of growth factor receptors, and other processes. Length = 290 |
| >gnl|CDD|220652 pfam10250, O-FucT, GDP-fucose protein O-fucosyltransferase | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
| >gnl|CDD|211383 cd11296, O-FucT_like, GDP-fucose protein O-fucosyltransferase and related proteins | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 604 | |||
| PF10250 | 351 | O-FucT: GDP-fucose protein O-fucosyltransferase; I | 100.0 | |
| KOG3849 | 386 | consensus GDP-fucose protein O-fucosyltransferase | 95.79 | |
| PF05830 | 321 | NodZ: Nodulation protein Z (NodZ); InterPro: IPR00 | 90.46 |
| >PF10250 O-FucT: GDP-fucose protein O-fucosyltransferase; InterPro: IPR019378 This is a family of conserved proteins representing the enzyme responsible for adding O-fucose to EGF (epidermal growth factor-like) repeats | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-57 Score=460.08 Aligned_cols=308 Identities=39% Similarity=0.602 Sum_probs=210.6
Q ss_pred ecCchhhHHHHHHHHHHHHHHhcCeEEeccccCCCcccCCCC-----CCcccchHHHHHhcCCCeEEeccCchhhhchhh
Q 007425 182 ANGGMNQQRVAICNAVVLARLLNATLVVPKFMYSSVWRDVSQ-----FSDIYQEEHFINYLTPDIRMVKELPNKLQSLDL 256 (604)
Q Consensus 182 ~nGGLNQqR~~IcDaVaVARiLNATLViP~l~~ss~W~D~S~-----F~DIFD~dhFI~~Lk~DVrIVk~LP~~~~~~~~ 256 (604)
+.||+|+||.++++||++|++||+|||||.+...+.|+|.++ |+|+||+++|+++++++|.+.+.+|..+.....
T Consensus 6 ~~GGfnNQr~~~~~a~~~A~~LnRTLVLPp~~~~~~~~~~~~~~~ipf~~~fD~~~l~~~~~~vi~~~ef~~~~~~~~~~ 85 (351)
T PF10250_consen 6 CMGGFNNQRMGFENAVVFAKALNRTLVLPPFIKHYHWKDQSKQRHIPFSDFFDVEHLRKFLRPVITMEEFLPKHWDEVFR 85 (351)
T ss_dssp -SSSHHHHHHHHHHHHHHHHHHT-EEE--EEEEESSSS----EEEEEHHHHB-HHHHTTTS--EE-HHHHHHHHS-GGG-
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCEEEcCCccccccccccccccccChhhhccHHHHHHHhhCceehheeccchhccccc
Confidence 899999999999999999999999999999999999999988 999999999999999999999999987765422
Q ss_pred hhh------------------------cccccccCCCC-CCChHHHHHhhhhhhhhc------CeEEEeccCCcccCCCC
Q 007425 257 EAI------------------------GSVVTDVDIPK-ESKPSFYLKNIIPILLRN------GVVHLLGFGNRLAFDPI 305 (604)
Q Consensus 257 ~~~------------------------~~~~~~~~v~~-~s~~~~Y~~~VLP~L~k~------~VI~l~~f~~RLa~d~l 305 (604)
... +.......... ++.+.+|+++++|++.++ +|+.|.++..++..+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 165 (351)
T PF10250_consen 86 LQYCWSPWESGSWDDNMKDGNPFGPFWDKFPIKFDPCEFWSSPSLYLEDVLPELREWNENSEHPVIAFTGFESRLPDNYL 165 (351)
T ss_dssp EEEESS-B--------TTSSTTHHHHHHHTT---SEEE-E-TTSTTTT-STTHHHHHHHHTT-SEEEESS-SS-SS--GG
T ss_pred hhhcccccccccchhhccccccccccccccceeeccccccCCchhhHHHhhhHHhhhccccccccceeccccccchhccc
Confidence 100 00011122233 778889999999999987 99999999999999888
Q ss_pred chhhhhhhhhhcccccccchhHHHHHHHHHHHHhccCCCCCCCCccccCCccchhhhhhhcccccCCceEEEeechhhhh
Q 007425 306 PFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDM 385 (604)
Q Consensus 306 P~diQrLRCrvnF~ALrF~p~I~~lg~~LV~RLR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gkylALHLRfE~DM 385 (604)
+.++|| +|+|+++|+++|+++|++++..+ ++|||||||+|+||
T Consensus 166 ~~~~~r--------~l~~~~~i~~~a~~~i~~~~~~~-----------------------------~~yiavHlR~~~D~ 208 (351)
T PF10250_consen 166 DRDLQR--------YLRFSPEIRELADKFIKRLLAGG-----------------------------GPYIAVHLRRGKDW 208 (351)
T ss_dssp GGGGGG--------G--B-HHHHHHHHHHHHHH---------------------------------SSEEEEEE--SHHH
T ss_pred CccceE--------EEecCHHHHHHHHHHHHHhhccc-----------------------------CceEEEeecccCch
Confidence 999988 99999999999999999999332 34999999999999
Q ss_pred hhhccccCCCchhHHHHHHHHHHhhcchhhhccccCCCCChHhhhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEEeceec
Q 007425 386 VAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAEIRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIY 465 (604)
Q Consensus 386 lA~SgC~~ggg~~E~~EL~~~R~~~~~~~~~~~k~~~~i~~~~~R~~G~CPLTPeEvgl~L~ALGf~~~T~IYlA~geiY 465 (604)
+++|.+++ ++..|+.+|... .+.+.+...+..|.||++|++++.+++++|+.+.|.||||++++|
T Consensus 209 --~~~C~~~~---~~~~~~~~~~~~----------~~~~~~~~~~~~~~~p~~~~~~~~i~~~~~~~~~~~vYiAtd~~~ 273 (351)
T PF10250_consen 209 --FSACEFKG---ERHLLASPRCWG----------KKSINPEKKRRNGCCPSTPQEAKQILRALGKNNTTVVYIATDEIY 273 (351)
T ss_dssp --HHHHCT-T-------TTTHHHH-----------GGGTT-----HHHHS--HHHHHHHHHHHHHHHT-SEEEEEESS--
T ss_pred --HhhcccCC---chHHHHHhHhhc----------cccccchhhhhcCCCCChHHHHHHHHHHhccCCCCEEEEecCccc
Confidence 88999955 778888888641 122456788899999999999999999999999999999999999
Q ss_pred cccccchhhHhhCCCccccccCCCccccccccccccccchheeeeeccCceeeeCCCCCchhhhhhcccccccCCCCcc
Q 007425 466 GGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDFIGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 544 (604)
Q Consensus 466 GG~~~L~pL~~~FPnl~tKetLas~eEL~pF~~~sS~lAALDYiVcl~SDVFV~t~~G~nma~lV~GhR~y~G~~~~kT 544 (604)
||...|.+|++.||++++|+++.+.+|+++|.+ .++|+||++||++||+||+|. ||+|+..|+++|.|.|+.++||
T Consensus 274 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~a~vD~~i~~~s~~Figt~-~Stfs~~i~~~R~~~g~~~~~~ 349 (351)
T PF10250_consen 274 GGERRLDPLKNMFPNVVTKDDLLSHEELEPLND--DQLAMVDQEICSRSDVFIGTC-GSTFSSNIARERHYRGKPKRKS 349 (351)
T ss_dssp ---------HHHHHHHHGGGT--EE--S-------S--HHHHHHHHHHSSEEEE-T-T-HHHHHHHHHHHHSSSS---E
T ss_pred ccchhHHHHHHHhhhhEeccccCCHHHhhhccc--cchhHHHHHHHhcCCEEEecC-cchhHHHhhcccCcCCCCCCCC
Confidence 999999999999999999999999999999996 889999999999999999999 6789999999999999886554
|
Six highly conserved cysteines are present as well as a DXD-like motif (ERD), conserved in mammals, Drosophila, and Caenorhabditis elegans. Both features are characteristic of several glycosyltransferase families. The enzyme is a membrane-bound protein released by proteolysis and, as for most glycosyltransferases, is strongly activated by manganese []. ; PDB: 3ZY6_A 3ZY3_A 3ZY5_A 3ZY2_A 3ZY4_A. |
| >KOG3849 consensus GDP-fucose protein O-fucosyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PF05830 NodZ: Nodulation protein Z (NodZ); InterPro: IPR008716 The nodulation genes of Rhizobia are regulated by the nodD gene product in response to host-produced flavonoids and appear to encode enzymes involved in the production of a lipo-chitose signal molecule required for infection and nodule formation | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 604 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 7e-05 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 7e-07
Identities = 70/448 (15%), Positives = 126/448 (28%), Gaps = 139/448 (31%)
Query: 195 NAVVLARLLNATL------VVPKFM-------YSSVW-------RDVSQFSDIYQEEH-- 232
+AV L TL +V KF+ Y + R S + +Y E+
Sbjct: 59 DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118
Query: 233 -------FINYLTPDIRMVKELPNKLQSLDLEA---------IG-SVVT-DVDIPKESKP 274
F Y ++ +L L L G + V DV
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-------- 170
Query: 275 SFYLKNIIPILLRNGVVHLLGFGNRLAFDPIPFQLQRL--RCRCNFHALQFA----PKIQ 328
+ + + L N + + + LQ+L + N+ +
Sbjct: 171 ---CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 329 ETGALLLRRLRKHEGHSGPLDHYLVGPYADSIMKEKRGQSAKA----------SRYLAIH 378
+ LRRL K + + L LV ++ + ++ A +R+ +
Sbjct: 228 HSIQAELRRLLKSKPYENCL---LV---LLNV---QNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 379 LRFEIDMVAH-SLCEFGGGEEERQELE---KYREIHFPALAHLKKTTKLPSP------AE 428
H SL + KY + L TT +P AE
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT---NPRRLSIIAE 335
Query: 429 IRSEGLC----------------------PLTPEEAVLMLAALGFNRKTHVFVAGAQIYG 466
+GL L P E M L VF A I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS------VFPPSAHIPT 389
Query: 467 GTRRLGALNSLYPYLVTKENLLSATELEPF-------KNFSSQLAALDF-IGCTAANAFA 518
L+ ++ ++ + ++ +L + K + + ++ + N +A
Sbjct: 390 IL-----LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 519 MTDSGSQLSSLVSGYRI---YYGGGKMP 543
+ S+V Y I + +P
Sbjct: 445 LHR------SIVDHYNIPKTFDSDDLIP 466
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* Length = 362 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 604 | |||
| 4ap5_A | 408 | GDP-fucose protein O-fucosyltransferase 2; GT-B, G | 99.51 | |
| 3zy2_A | 362 | Putative GDP-fucose protein O-fucosyltransferase; | 98.97 | |
| 2hhc_A | 330 | NODZ, nodulation fucosyltransferase NODZ; glycosyl | 95.76 | |
| 2de0_X | 526 | Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran | 94.92 |
| >4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG; 3.00A {Homo sapiens} PDB: 4ap6_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1e-13 Score=145.42 Aligned_cols=307 Identities=21% Similarity=0.203 Sum_probs=169.3
Q ss_pred CCCCCceEEEEec-C-chhhHHHHHHHHHHHHHHhcCe----EEeccccCCCcccCC------CCCCcccchHHHHHhcC
Q 007425 171 SGGNNGYILVTAN-G-GMNQQRVAICNAVVLARLLNAT----LVVPKFMYSSVWRDV------SQFSDIYQEEHFINYLT 238 (604)
Q Consensus 171 ~~~snGYL~V~~n-G-GLNQqR~~IcDaVaVARiLNAT----LViP~l~~ss~W~D~------S~F~DIFD~dhFI~~Lk 238 (604)
....++||+-..| | |.|.||...-.|.++|+.||.| ||||-+..-.-|.-. -.|++.||++.+-
T Consensus 18 ~~~~~rYl~y~~~~g~Gfn~qrd~f~~~a~~a~~Lnrt~~~~LVLPPw~~~~h~~~~~~~~~~ipf~~fFDv~~L~---- 93 (408)
T 4ap5_A 18 AASRRRYLLYDVNPPEGFNLRRDVYIRIASLLKTLLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDLPSLN---- 93 (408)
T ss_dssp --CCCEEEEECCCTTCCHHHHHHHHHHHHHHHHHHHTTSCEEEEECCBCCSCGGGSTTSCCCSBCGGGTBCHHHHH----
T ss_pred CccccceEEecCCCCCcccHHHHHHHHHHHHHHHHhCcCCcEEEeCCCcccccccCCcccceeccHHHhcCHHHHH----
Confidence 3567899999864 5 8999999999999999999999 999977543445443 3699999998743
Q ss_pred CCeEEeccCchhhhc-------------------------hhhhhhcc-----cccccCCCCCCChHHHH----------
Q 007425 239 PDIRMVKELPNKLQS-------------------------LDLEAIGS-----VVTDVDIPKESKPSFYL---------- 278 (604)
Q Consensus 239 ~DVrIVk~LP~~~~~-------------------------~~~~~~~~-----~~~~~~v~~~s~~~~Y~---------- 278 (604)
..|.|+.- +++.. .+...... ...........++.|=.
T Consensus 94 ~~vpVI~m--eeFl~~~~~~~~~~v~~l~~~~~~~~~~~~~~k~~~~~c~~~~~~~~~~~~~~~gpfw~~~~v~~~~~~c 171 (408)
T 4ap5_A 94 KNIPVIEY--EQFIAESGGPFIDQVYVLQSYAEGWKEGTWEEKVDERPCIDQLLYSQDKHEYYRGWFWGYEETRGLNVSC 171 (408)
T ss_dssp TTSCEEEH--HHHHHHSSSSEEEEEEEEECCTTCCCTTCCCCCEEEECCSSCCSCEECTTSCEECCGGGCTTCEEEEEEE
T ss_pred hhCCeeEH--HHHHHHhCCCCCcceeeccccHhhcccccccchhhhhhhhhccccccccccCccCCcccccccccCCcee
Confidence 34445421 11100 00000000 00000000001122211
Q ss_pred -------Hhhhhhhhhc---CeEEEeccCCcccCCCCchhhhhhhhhhcccccccchhHHHHHHHHHHHHhccCCCCCCC
Q 007425 279 -------KNIIPILLRN---GVVHLLGFGNRLAFDPIPFQLQRLRCRCNFHALQFAPKIQETGALLLRRLRKHEGHSGPL 348 (604)
Q Consensus 279 -------~~VLP~L~k~---~VI~l~~f~~RLa~d~lP~diQrLRCrvnF~ALrF~p~I~~lg~~LV~RLR~~~~~~~~~ 348 (604)
..+-|.+.+. .-+-+..+...|+.-.-..+...+| ..|+|++.|.+.|+..++..-..... .
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~s~~v~~~e~~l~~~~~~~~~~~~~-----r~l~~s~~l~~~a~~fi~~~L~~~~~---~ 243 (408)
T 4ap5_A 172 LSVQGSASIVAPLLLRNTSARSVMLDRAENLLHDHYGGKEYWDTR-----RSMVFARHLREVGDEFRSRHLNSTDD---A 243 (408)
T ss_dssp EEECSBGGGGHHHHHHCTTCSEEEEESGGGSBCSSTTSHHHHHHH-----HTCCBCHHHHHHHHHHHHHHHCCCTT---T
T ss_pred EEEeecchhhhhhhhhcCChhhhhhhhcccCCccccchHhhhhHH-----HHhhhhHHHHHHHHHHHHHHhCcccc---e
Confidence 1122334332 2233333444443222223333333 47999999999999998876532110 0
Q ss_pred CccccCCccchhhhhhhcccccCCceEEEeechhhhhhhhccccCCCchhHHHHHHHHHHhhcchhhhccccCCCCChHh
Q 007425 349 DHYLVGPYADSIMKEKRGQSAKASRYLAIHLRFEIDMVAHSLCEFGGGEEERQELEKYREIHFPALAHLKKTTKLPSPAE 428 (604)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~gkylALHLRfE~DMlA~SgC~~ggg~~E~~EL~~~R~~~~~~~~~~~k~~~~i~~~~ 428 (604)
+ .+..+ +.-...........+|+|+|+|+|-+.=+.++..|... .+...+
T Consensus 244 ~-h~r~~-~dw~~~~~~~~~~~~~~y~~~H~Rr~d~~~~~~~~~ps----~~~~~~------------------------ 293 (408)
T 4ap5_A 244 D-RIPFQ-EDWMKMKVKLGSALGGPYLGVHLRRKDFIWGHRQDVPS----LEGAVR------------------------ 293 (408)
T ss_dssp T-TCCCC-SSGGGCCCCTTCBCCEEEEEEEECCTTTTTTTCSSSCC----HHHHHH------------------------
T ss_pred e-ecccc-hhHhhhhcccccccCCCccccccccccchhhhhccCCC----HHHHHH------------------------
Confidence 0 00000 00000011112344678999999976323333333211 111111
Q ss_pred hhcCCCCCCCHHHHHHHHHHhCCCCCcEEEEEeceeccccccchhhHhhCCCccccccCCCccccccccccccccchhee
Q 007425 429 IRSEGLCPLTPEEAVLMLAALGFNRKTHVFVAGAQIYGGTRRLGALNSLYPYLVTKENLLSATELEPFKNFSSQLAALDF 508 (604)
Q Consensus 429 ~R~~G~CPLTPeEvgl~L~ALGf~~~T~IYlA~geiYGG~~~L~pL~~~FPnl~tKetLas~eEL~pF~~~sS~lAALDY 508 (604)
.+.-+++.. +-+.||||+-+. +..+..|++.+|.++.-.. ..+++.++. ...+|.||-
T Consensus 294 ------------~i~~~~~~~---~~~~VyiATD~~---~~~~~~l~~~~~~~~~~~~--~~~~~~~~~--d~~~a~idq 351 (408)
T 4ap5_A 294 ------------KIRSLMKTH---RLDKVFVATDAV---RKEYEELKKLLPEMVRFEP--TWEELELYK--DGGVAIIDQ 351 (408)
T ss_dssp ------------HHHHHHHHH---TCSCEEEEECCC---HHHHHHHHHHCTTEECCCC--CHHHHHHHH--HHHHHHHHH
T ss_pred ------------HHHHHHHhc---CCCEEEEeCCCc---hhHHHHHHHhCCCcEEecC--cchhhhccC--cchhhHHHH
Confidence 111222222 234699998742 4457889999998764322 233444443 345789999
Q ss_pred eeeccCceeeeCCCCCchhhhhhcccccccCCCCcc
Q 007425 509 IGCTAANAFAMTDSGSQLSSLVSGYRIYYGGGKMPT 544 (604)
Q Consensus 509 iVcl~SDVFV~t~~G~nma~lV~GhR~y~G~~~~kT 544 (604)
+||.+||+||+|.. |.|+..|.=.|-+.|+....|
T Consensus 352 ~Ic~~a~~FiGt~~-StfS~~I~~eR~~~G~~~~~t 386 (408)
T 4ap5_A 352 WICAHARFFIGTSV-STFSFRIHEEREILGLDPKTT 386 (408)
T ss_dssp HHHHTEEEEEBCTT-CHHHHHHHHHHHHHTBCGGGT
T ss_pred HHHHhCCeeEeCCc-CchhHHHHHHHHhcCCCCCcc
Confidence 99999999999985 479999999999999865333
|
| >3zy2_A Putative GDP-fucose protein O-fucosyltransferase; glycosyltransferase, GT-B, catalytic mechanism,; HET: GDP; 1.54A {Caenorhabditis elegans} PDB: 3zy3_A* 3zy4_A* 3zy5_A* 3zy6_A* | Back alignment and structure |
|---|
| >2hhc_A NODZ, nodulation fucosyltransferase NODZ; glycosyltransferase; 1.54A {Bradyrhizobium SP} PDB: 2hlh_A 2ocx_A* 3siw_A* 3six_A* | Back alignment and structure |
|---|
| >2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00