Citrus Sinensis ID: 007434

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600----
MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPC
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccEEEEEcccccccEEEEEEEEccccccccccccccHHHHHHHcccccEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEEEccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHcccEEEEEEcccccEEEEEEEEEEccccccccccccccccccc
cccccccccccccHHHHHHHHHHHHHHHHHHHHcccHEHHHHEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEEccccccccEEccccccEHHHcccccEEEEcccccHHcccccccccccccHHHEHHHHHHHHccccccccHHcccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccccHEEccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccccccccccccccccEEEEEEEEEccccccHHHHHHHcccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccccccEEEEEEEEccccccccccccccccccc
mescnciepqwpadELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECalwmptrtglELQLSYTlrqqnpvgytvpiqlpvinqvfssnhavkispncpvarlrplagkympgevVAVRVPllhlsnfqindwpelsTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLlqeteltpeqRLMVETILKSSNLLATLINDVldlsrledgslqlqiGTFNLHAVFREVLNLIKPIASVKKLLVALNlapdlpeyavgdEKRLMQTLLNVVGNAVkftkegnisITGFVakseslrdsrapeffpvpienhFYLRVQvkdsgsgispqdipnLFTKFAQNQAIALRnssgsglgLAICKRFVNLMEGHiwieseglgkgctAIFIVKlgipehsndsnlsfipkmpc
mescnciePQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKaaeldremglirtqeetgrhvrmltheirstldrhtiLKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNavkftkegnisitgfvakseslrdsRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALrnssgsglGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIpehsndsnlsfipkmpc
MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWhvhelelvevvADQVAVALSHAAILEESMRARDLLMQQNIALDSarreaetairarNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPC
****NCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALD******ETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKS*******APEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIP****************
***CNC*EPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAE****************HVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAK************FPVPIENHFYLRVQVKDS*********************************LAICKRFVNLMEGHIWIESEGLGKGCTAIFIVK********************
MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPC
**SCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSE****SRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPE***************
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIPKMPC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query604 2.2.26 [Sep-21-2011]
Q9M7M1 738 Ethylene receptor OS=Prun N/A no 0.996 0.815 0.920 0.0
Q9XH57 741 Ethylene receptor 2 OS=Pe N/A no 0.998 0.813 0.903 0.0
O81122 741 Ethylene receptor OS=Malu N/A no 0.996 0.812 0.908 0.0
Q9ZWL6 738 Ethylene receptor OS=Pass N/A no 0.996 0.815 0.906 0.0
Q41342 754 Ethylene receptor 1 OS=So N/A no 0.998 0.799 0.880 0.0
Q9XH58 740 Ethylene receptor 1 OS=Pe N/A no 0.996 0.813 0.870 0.0
O82436 740 Ethylene receptor 1 OS=Cu N/A no 0.995 0.812 0.885 0.0
P49333 738 Ethylene receptor 1 OS=Ar yes no 0.993 0.813 0.877 0.0
Q9SSY6 740 Ethylene receptor 1 OS=Cu N/A no 0.995 0.812 0.882 0.0
O49230 735 Ethylene receptor 1 OS=Br N/A no 0.988 0.812 0.871 0.0
>sp|Q9M7M1|ETR1_PRUPE Ethylene receptor OS=Prunus persica GN=ETR1 PE=2 SV=1 Back     alignment and function desciption
 Score = 1140 bits (2950), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 554/602 (92%), Positives = 575/602 (95%)

Query: 1   MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60
           ME+CNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA
Sbjct: 1   MEACNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60

Query: 61  FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120
           FIVLCGATHLINLWTF+MHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL
Sbjct: 61  FIVLCGATHLINLWTFSMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120

Query: 121 FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA 180
           FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA
Sbjct: 121 FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA 180

Query: 181 LWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG 240
           LWMPTRTGLELQLSYTLRQQNPVGYTVPI LPVINQVFSSN A+KISPN PVAR+RPLAG
Sbjct: 181 LWMPTRTGLELQLSYTLRQQNPVGYTVPIHLPVINQVFSSNRALKISPNSPVARMRPLAG 240

Query: 241 KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300
           K+MPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA
Sbjct: 241 KHMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300

Query: 301 DQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMH 360
           DQVAVALSHAAILEESMRARDLLM+QNIALD ARREAETAIRARNDFLAVMNHEMRTPMH
Sbjct: 301 DQVAVALSHAAILEESMRARDLLMEQNIALDLARREAETAIRARNDFLAVMNHEMRTPMH 360

Query: 361 AIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420
           AIIALSSLLQETELTPEQRLMVETILKSS+LLATLINDVLDLSRLEDGSLQL+I TFNLH
Sbjct: 361 AIIALSSLLQETELTPEQRLMVETILKSSHLLATLINDVLDLSRLEDGSLQLEIATFNLH 420

Query: 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480
           +VFREV NLIKP+ASVKKL V+LNLA DLP  AVGDEKRLMQ +LNVVGNAVKF+KEG+I
Sbjct: 421 SVFREVHNLIKPVASVKKLSVSLNLAADLPVQAVGDEKRLMQIVLNVVGNAVKFSKEGSI 480

Query: 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI 540
           SIT FVAKSESLRD RAPEFFP   +NHFYLRVQVKDSGSGI+PQDIP LFTKFAQ Q++
Sbjct: 481 SITAFVAKSESLRDFRAPEFFPAQSDNHFYLRVQVKDSGSGINPQDIPKLFTKFAQTQSL 540

Query: 541 ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIP 600
           A RNS GSGLGLAICKRFVNLMEGHIWIESEG GKGCTAIFIVKLG  E SN+S L F+ 
Sbjct: 541 ATRNSGGSGLGLAICKRFVNLMEGHIWIESEGPGKGCTAIFIVKLGFAERSNESKLPFLT 600

Query: 601 KM 602
           K+
Sbjct: 601 KV 602
May act early in the ethylene signal transduction pathway, possibly as an ethylene receptor, or as a regulator of the pathway.
Prunus persica (taxid: 3760)
EC: 2EC: .EC: 7EC: .EC: 1EC: 3EC: .EC: 3
>sp|Q9XH57|ETR2_PELHO Ethylene receptor 2 OS=Pelargonium hortorum GN=ETR2 PE=2 SV=1 Back     alignment and function description
>sp|O81122|ETR1_MALDO Ethylene receptor OS=Malus domestica GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZWL6|ETR1_PASED Ethylene receptor OS=Passiflora edulis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|Q41342|ETR1_SOLLC Ethylene receptor 1 OS=Solanum lycopersicum GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9XH58|ETR1_PELHO Ethylene receptor 1 OS=Pelargonium hortorum GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O82436|ETR1_CUCMN Ethylene receptor 1 OS=Cucumis melo var. cantalupensis GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|P49333|ETR1_ARATH Ethylene receptor 1 OS=Arabidopsis thaliana GN=ETR1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SSY6|ETR1_CUCSA Ethylene receptor 1 OS=Cucumis sativus GN=ETR1 PE=2 SV=1 Back     alignment and function description
>sp|O49230|ETR1_BRAOL Ethylene receptor 1 OS=Brassica oleracea GN=ETR1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
283520942 740 ethylene response 1 [Citrus sinensis] gi 0.998 0.814 0.998 0.0
7407123 739 ethylene receptor [Mangifera indica] 0.996 0.814 0.941 0.0
227072259 740 ethylene receptor [Dimocarpus longan] 0.996 0.813 0.933 0.0
451805013 740 ethylene receptor [Paeonia lactiflora] 0.998 0.814 0.912 0.0
163639427 744 ethylene receptor ETR1 [Actinidia delici 0.996 0.809 0.913 0.0
224134496 737 ethylene receptor 4 [Populus trichocarpa 0.995 0.815 0.916 0.0
224059042 737 ethylene receptor 3 [Populus trichocarpa 0.995 0.815 0.911 0.0
22095682 738 RecName: Full=Ethylene receptor gi|68410 0.996 0.815 0.920 0.0
18252341 741 putative ethylene receptor [Pyrus commun 0.996 0.812 0.915 0.0
121488659 741 ethylene receptor [Prunus domestica subs 0.996 0.812 0.916 0.0
>gi|283520942|gb|ADB25213.1| ethylene response 1 [Citrus sinensis] gi|283520950|gb|ADB25217.1| ethylene response 1 [Citrus hybrid cultivar] Back     alignment and taxonomy information
 Score = 1239 bits (3206), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 602/603 (99%), Positives = 603/603 (100%)

Query: 1   MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60
           MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA
Sbjct: 1   MESCNCIEPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGA 60

Query: 61  FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120
           FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL
Sbjct: 61  FIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTREL 120

Query: 121 FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA 180
           FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA
Sbjct: 121 FLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEECA 180

Query: 181 LWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG 240
           LWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG
Sbjct: 181 LWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAG 240

Query: 241 KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300
           KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA
Sbjct: 241 KYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVA 300

Query: 301 DQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMH 360
           DQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMH
Sbjct: 301 DQVAVALSHAAILEESMRARDLLMQQNIALDSARREAETAIRARNDFLAVMNHEMRTPMH 360

Query: 361 AIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420
           AIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH
Sbjct: 361 AIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLH 420

Query: 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480
           AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI
Sbjct: 421 AVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNI 480

Query: 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAI 540
           SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQV+DSGSGISPQDIPNLFTKFAQNQAI
Sbjct: 481 SITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVRDSGSGISPQDIPNLFTKFAQNQAI 540

Query: 541 ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIP 600
           ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIP
Sbjct: 541 ALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFIP 600

Query: 601 KMP 603
           KMP
Sbjct: 601 KMP 603

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|7407123|gb|AAF61919.1|AF227742_1 ethylene receptor [Mangifera indica] Back     alignment and taxonomy information
>gi|227072259|gb|ACL81480.3| ethylene receptor [Dimocarpus longan] Back     alignment and taxonomy information
>gi|451805013|gb|AFS33091.2| ethylene receptor [Paeonia lactiflora] Back     alignment and taxonomy information
>gi|163639427|gb|ABY28264.1| ethylene receptor ETR1 [Actinidia deliciosa] Back     alignment and taxonomy information
>gi|224134496|ref|XP_002327419.1| ethylene receptor 4 [Populus trichocarpa] gi|222835973|gb|EEE74394.1| ethylene receptor 4 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224059042|ref|XP_002299688.1| ethylene receptor 3 [Populus trichocarpa] gi|222846946|gb|EEE84493.1| ethylene receptor 3 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|22095682|sp|Q9M7M1.1|ETR1_PRUPE RecName: Full=Ethylene receptor gi|6841075|gb|AAF28893.1|AF124527_1 ethylene receptor [Prunus persica] Back     alignment and taxonomy information
>gi|18252341|gb|AAL66202.1|AF386520_1 putative ethylene receptor [Pyrus communis] Back     alignment and taxonomy information
>gi|121488659|emb|CAI64505.1| ethylene receptor [Prunus domestica subsp. insititia] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query604
UNIPROTKB|Q41342 754 ETR1 "Ethylene receptor 1" [So 0.996 0.798 0.847 1.1e-270
TAIR|locus:2201552 738 ETR1 "ETHYLENE RESPONSE 1" [Ar 0.991 0.811 0.840 9e-267
UNIPROTKB|Q41341635 Never-ripe "Ethylene receptor" 0.993 0.944 0.698 1.9e-218
TAIR|locus:2058500613 ERS1 "AT2G40940" [Arabidopsis 0.983 0.969 0.695 8.7e-214
TAIR|locus:2086208 773 ETR2 "ethylene response 2" [Ar 0.905 0.707 0.387 3e-94
TAIR|locus:2084968 766 EIN4 "ETHYLENE INSENSITIVE 4" 0.932 0.734 0.378 1.6e-93
TAIR|locus:2018259645 ERS2 "ethylene response sensor 0.938 0.879 0.342 2e-79
UNIPROTKB|P0AEC5 918 barA [Escherichia coli K-12 (t 0.423 0.278 0.378 5.5e-35
TIGR_CMR|CPS_4165 1683 CPS_4165 "sensory box histidin 0.438 0.157 0.351 4.1e-34
UNIPROTKB|Q9KPC0 927 VC_2453 "Sensor histidine kina 0.443 0.289 0.361 1.6e-33
UNIPROTKB|Q41342 ETR1 "Ethylene receptor 1" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
 Score = 2603 (921.4 bits), Expect = 1.1e-270, P = 1.1e-270
 Identities = 512/604 (84%), Positives = 545/604 (90%)

Query:     1 MESCNCI-EPQWPADELLMKYQYISDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFG 59
             +ESCNCI +PQ PAD+LLMKYQYISDFFIALAYFSIP+ELIYFVKKSAVFPYRWVLVQFG
Sbjct:    15 VESCNCIIDPQLPADDLLMKYQYISDFFIALAYFSIPVELIYFVKKSAVFPYRWVLVQFG 74

Query:    60 AFIVLCGATHLINLWTFNMHSRTVAIVMTTAKVLTAVVSCATALMLVHIIPDLLSVKTRE 119
             AFIVLCGATHLINLWTFNMH+R VAIVMTT K LTA+VSC TALMLVHIIPDLLSVKTRE
Sbjct:    75 AFIVLCGATHLINLWTFNMHTRNVAIVMTTPKALTALVSCITALMLVHIIPDLLSVKTRE 134

Query:   120 LFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEEC 179
             LFLK KAA+LDREMG+IRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEEC
Sbjct:   135 LFLKKKAAQLDREMGIIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRTLALEEC 194

Query:   180 ALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLA 239
             ALWMPTRTGLELQLSYTLR QNPVG TVPIQLPVINQVF +NH VKISPN PVARLRP A
Sbjct:   195 ALWMPTRTGLELQLSYTLRHQNPVGLTVPIQLPVINQVFGTNHVVKISPNSPVARLRP-A 253

Query:   240 GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWXXXXXXXXXXX 299
             GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQW           
Sbjct:   254 GKYMPGEVVAVRVPLLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVV 313

Query:   300 ADQVAVALSHAAILEESMRARDLLMQQNIALDSXXXXXXXXXXXXNDFLAVMNHEMRTPM 359
             ADQVAVALSHAAILEESMRARDLLM+QN+ALD             NDFLAVMNHEMRTPM
Sbjct:   314 ADQVAVALSHAAILEESMRARDLLMEQNVALDLARREAEMAVRARNDFLAVMNHEMRTPM 373

Query:   360 HAIIALSSLLQETELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNL 419
             HAIIALSSLLQET+LTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQL IGTFNL
Sbjct:   374 HAIIALSSLLQETDLTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLDIGTFNL 433

Query:   420 HAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN 479
             HA+FREV +LIKPIASVKKL V L+L+ DLPEY +GDEKRLMQ LLNVVGNAVKF+KEGN
Sbjct:   434 HALFREVHSLIKPIASVKKLFVTLSLSSDLPEYVIGDEKRLMQILLNVVGNAVKFSKEGN 493

Query:   480 ISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQA 539
             +SI+ FVAKS+SLRD RAPEFF VP ENHFYLRVQ+KD+G GI+PQDIPNLF+KF Q+QA
Sbjct:   494 VSISAFVAKSDSLRDPRAPEFFAVPSENHFYLRVQIKDTGIGITPQDIPNLFSKFTQSQA 553

Query:   540 IALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKLGIPEHSNDSNLSFI 599
             +A  NS G+GLGLAICKRFVNLMEGHIWIESEGLGKG TAIFI+KLGIP  +N+S L F+
Sbjct:   554 LATTNSGGTGLGLAICKRFVNLMEGHIWIESEGLGKGSTAIFIIKLGIPGRANESKLPFV 613

Query:   600 PKMP 603
              K+P
Sbjct:   614 TKLP 617
GO:0005515 "protein binding" evidence=IPI
TAIR|locus:2201552 ETR1 "ETHYLENE RESPONSE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q41341 Never-ripe "Ethylene receptor" [Solanum lycopersicum (taxid:4081)] Back     alignment and assigned GO terms
TAIR|locus:2058500 ERS1 "AT2G40940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086208 ETR2 "ethylene response 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084968 EIN4 "ETHYLENE INSENSITIVE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018259 ERS2 "ethylene response sensor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P0AEC5 barA [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_4165 CPS_4165 "sensory box histidine kinase/response regulator" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KPC0 VC_2453 "Sensor histidine kinase/response regulator" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9XH57ETR2_PELHO2, ., 7, ., 1, 3, ., 30.90380.99830.8137N/Ano
O48929ETR1_TOBAC2, ., 7, ., 1, 3, ., 30.86850.99330.8130N/Ano
Q41342ETR1_SOLLC2, ., 7, ., 1, 3, ., 30.88090.99830.7997N/Ano
Q38846ERS1_ARATH2, ., 7, ., 1, 3, ., 30.72190.98340.9690nono
Q9M7M1ETR1_PRUPE2, ., 7, ., 1, 3, ., 30.92020.99660.8157N/Ano
P49333ETR1_ARATH2, ., 7, ., 1, 3, ., 30.87740.99330.8130yesno
O49187ETR2_SOLLC2, ., 7, ., 1, 3, ., 30.83860.99330.8152N/Ano
Q9XH58ETR1_PELHO2, ., 7, ., 1, 3, ., 30.87040.99660.8135N/Ano
O81122ETR1_MALDO2, ., 7, ., 1, 3, ., 30.90860.99660.8124N/Ano
Q9ZWL6ETR1_PASED2, ., 7, ., 1, 3, ., 30.90690.99660.8157N/Ano
O49230ETR1_BRAOL2, ., 7, ., 1, 3, ., 30.87100.98840.8122N/Ano
O82436ETR1_CUCMN2, ., 7, ., 1, 3, ., 30.88530.99500.8121N/Ano
Q9SSY6ETR1_CUCSA2, ., 7, ., 1, 3, ., 30.88200.99500.8121N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.130.983
3rd Layer2.7.13.30.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
ETR4
ethylene receptor 4 (738 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.II.248.1
extra response regulator (119 aa)
  •     0.437
fgenesh4_pm.C_LG_IX000289
extra response regulator (129 aa)
  •     0.425

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
PRK11107 919 PRK11107, PRK11107, hybrid sensory histidine kinas 3e-53
TIGR02956 968 TIGR02956, TMAO_torS, TMAO reductase sytem sensor 2e-51
COG0642336 COG0642, BaeS, Signal transduction histidine kinas 2e-43
PRK15347 921 PRK15347, PRK15347, two component system sensor ki 3e-43
PRK10841 924 PRK10841, PRK10841, hybrid sensory kinase in two-c 1e-38
PRK11091 779 PRK11091, PRK11091, aerobic respiration control se 8e-38
PRK11466 914 PRK11466, PRK11466, hybrid sensory histidine kinas 2e-30
TIGR02966333 TIGR02966, phoR_proteo, phosphate regulon sensor k 3e-30
PRK09959 1197 PRK09959, PRK09959, hybrid sensory histidine kinas 3e-28
COG2205890 COG2205, KdpD, Osmosensitive K+ channel histidine 2e-27
COG5002459 COG5002, VicK, Signal transduction histidine kinas 3e-26
smart00387111 smart00387, HATPase_c, Histidine kinase-like ATPas 5e-26
pfam02518111 pfam02518, HATPase_c, Histidine kinase-, DNA gyras 3e-25
cd00075103 cd00075, HATPase_c, Histidine kinase-like ATPases; 3e-23
PRK11360607 PRK11360, PRK11360, sensory histidine kinase AtoS; 5e-20
pfam0051266 pfam00512, HisKA, His Kinase A (phospho-acceptor) 3e-19
smart0038866 smart00388, HisKA, His Kinase A (phosphoacceptor) 1e-18
COG4251750 COG4251, COG4251, Bacteriophytochrome (light-regul 2e-18
PRK10618 894 PRK10618, PRK10618, phosphotransfer intermediate p 6e-18
TIGR01386457 TIGR01386, cztS_silS_copS, heavy metal sensor kina 7e-17
PRK11006430 PRK11006, phoR, phosphate regulon sensor protein; 3e-16
PRK10490895 PRK10490, PRK10490, sensor protein KdpD; Provision 6e-16
pfam01590143 pfam01590, GAF, GAF domain 6e-16
PRK09303380 PRK09303, PRK09303, adaptive-response sensory kina 9e-16
PRK11100475 PRK11100, PRK11100, sensory histidine kinase CreC; 5e-15
cd0008265 cd00082, HisKA, Histidine Kinase A (dimerization/p 1e-14
PRK10549466 PRK10549, PRK10549, signal transduction histidine- 4e-14
PRK10364457 PRK10364, PRK10364, sensor protein ZraS; Provision 2e-13
PRK09835482 PRK09835, PRK09835, sensor kinase CusS; Provisiona 1e-12
smart00065149 smart00065, GAF, Domain present in phytochromes an 1e-09
COG3852363 COG3852, NtrB, Signal transduction histidine kinas 2e-09
PRK10604433 PRK10604, PRK10604, sensor protein RstB; Provision 4e-09
PRK09467435 PRK09467, envZ, osmolarity sensor protein; Provisi 6e-09
COG4192673 COG4192, COG4192, Signal transduction histidine ki 9e-09
PRK09470461 PRK09470, cpxA, two-component sensor protein; Prov 9e-08
COG4191603 COG4191, COG4191, Signal transduction histidine ki 3e-07
TIGR02916679 TIGR02916, PEP_his_kin, putative PEP-CTERM system 1e-05
PRK13837 828 PRK13837, PRK13837, two-component VirA-like sensor 8e-05
pfam13492129 pfam13492, GAF_3, GAF domain 3e-04
COG5000712 COG5000, NtrY, Signal transduction histidine kinas 7e-04
PRK11073348 PRK11073, glnL, nitrogen regulation protein NR(II) 0.001
COG3290537 COG3290, CitA, Signal transduction histidine kinas 0.002
COG2203175 COG2203, FhlA, FOG: GAF domain [Signal transductio 0.004
>gnl|CDD|236848 PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information 
 Score =  195 bits (499), Expect = 3e-53
 Identities = 102/265 (38%), Positives = 148/265 (55%), Gaps = 16/265 (6%)

Query: 326 QNIALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQETELTPEQRLMVETI 385
           QN+ LD A++ A+ A R +++FLA M+HE+RTP++ +I  +    +T LTP QR  ++TI
Sbjct: 275 QNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRQTLKTPLTPTQRDYLQTI 334

Query: 386 LKSSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNL 445
            +S+N L  +IND+LD S+LE G L L+   F+L     EV+ L+   A  K L + LN+
Sbjct: 335 ERSANNLLAIINDILDFSKLEAGKLVLENIPFSLRETLDEVVTLLAHSAHEKGLELTLNI 394

Query: 446 APDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPI 505
            PD+P+  +GD  RL Q + N+VGNA+KFT+ GNI I         LR            
Sbjct: 395 DPDVPDNVIGDPLRLQQIITNLVGNAIKFTESGNIDI------LVELRALS--------- 439

Query: 506 ENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGH 565
                L VQ++D+G GIS +    LF  F Q  A   R   G+GLGL I ++ VN M G 
Sbjct: 440 NTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGD 499

Query: 566 IWIESEGLGKGCTAIFIVKLGIPEH 590
           I   S+   +G T  F + L +  +
Sbjct: 500 ISFHSQ-PNRGSTFWFHLPLDLNPN 523

Length = 919
>gnl|CDD|234070 TIGR02956, TMAO_torS, TMAO reductase sytem sensor TorS Back     alignment and domain information
>gnl|CDD|223715 COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|237951 PRK15347, PRK15347, two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>gnl|CDD|182772 PRK10841, PRK10841, hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>gnl|CDD|236914 PRK11466, PRK11466, hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>gnl|CDD|234074 TIGR02966, phoR_proteo, phosphate regulon sensor kinase PhoR Back     alignment and domain information
>gnl|CDD|182169 PRK09959, PRK09959, hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>gnl|CDD|225115 COG2205, KdpD, Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|227335 COG5002, VicK, Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases Back     alignment and domain information
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Back     alignment and domain information
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>gnl|CDD|236901 PRK11360, PRK11360, sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>gnl|CDD|215963 pfam00512, HisKA, His Kinase A (phospho-acceptor) domain Back     alignment and domain information
>gnl|CDD|214644 smart00388, HisKA, His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>gnl|CDD|226702 COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236726 PRK10618, PRK10618, phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>gnl|CDD|233391 TIGR01386, cztS_silS_copS, heavy metal sensor kinase Back     alignment and domain information
>gnl|CDD|182895 PRK11006, phoR, phosphate regulon sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|236701 PRK10490, PRK10490, sensor protein KdpD; Provisional Back     alignment and domain information
>gnl|CDD|216590 pfam01590, GAF, GAF domain Back     alignment and domain information
>gnl|CDD|236462 PRK09303, PRK09303, adaptive-response sensory kinase; Validated Back     alignment and domain information
>gnl|CDD|236846 PRK11100, PRK11100, sensory histidine kinase CreC; Provisional Back     alignment and domain information
>gnl|CDD|119399 cd00082, HisKA, Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>gnl|CDD|182539 PRK10549, PRK10549, signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>gnl|CDD|236674 PRK10364, PRK10364, sensor protein ZraS; Provisional Back     alignment and domain information
>gnl|CDD|182101 PRK09835, PRK09835, sensor kinase CusS; Provisional Back     alignment and domain information
>gnl|CDD|214500 smart00065, GAF, Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>gnl|CDD|226370 COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236724 PRK10604, PRK10604, sensor protein RstB; Provisional Back     alignment and domain information
>gnl|CDD|236531 PRK09467, envZ, osmolarity sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|226655 COG4192, COG4192, Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|236532 PRK09470, cpxA, two-component sensor protein; Provisional Back     alignment and domain information
>gnl|CDD|226654 COG4191, COG4191, Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|234058 TIGR02916, PEP_his_kin, putative PEP-CTERM system histidine kinase Back     alignment and domain information
>gnl|CDD|237526 PRK13837, PRK13837, two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>gnl|CDD|222174 pfam13492, GAF_3, GAF domain Back     alignment and domain information
>gnl|CDD|227333 COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|182947 PRK11073, glnL, nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>gnl|CDD|225827 COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|225113 COG2203, FhlA, FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 604
COG2205890 KdpD Osmosensitive K+ channel histidine kinase [Si 100.0
PRK10490895 sensor protein KdpD; Provisional 100.0
TIGR02916679 PEP_his_kin putative PEP-CTERM system histidine ki 100.0
PRK13837 828 two-component VirA-like sensor kinase; Provisional 100.0
COG5002459 VicK Signal transduction histidine kinase [Signal 100.0
PRK11091 779 aerobic respiration control sensor protein ArcB; P 100.0
COG4251750 Bacteriophytochrome (light-regulated signal transd 100.0
PRK10618 894 phosphotransfer intermediate protein in two-compon 100.0
PRK09303380 adaptive-response sensory kinase; Validated 100.0
PRK10841 924 hybrid sensory kinase in two-component regulatory 100.0
COG4191603 Signal transduction histidine kinase regulating C4 100.0
COG3275557 LytS Putative regulator of cell autolysis [Signal 100.0
PRK11107 919 hybrid sensory histidine kinase BarA; Provisional 100.0
TIGR02956 968 TMAO_torS TMAO reductase sytem sensor TorS. This p 100.0
PRK15347 921 two component system sensor kinase SsrA; Provision 100.0
PRK11466 914 hybrid sensory histidine kinase TorS; Provisional 100.0
PRK11006430 phoR phosphate regulon sensor protein; Provisional 100.0
COG3852363 NtrB Signal transduction histidine kinase, nitroge 100.0
PRK10604433 sensor protein RstB; Provisional 100.0
PRK10364457 sensor protein ZraS; Provisional 99.98
TIGR02938494 nifL_nitrog nitrogen fixation negative regulator N 99.97
PRK10815485 sensor protein PhoQ; Provisional 99.97
PRK09959 1197 hybrid sensory histidine kinase in two-component r 99.97
PRK10549466 signal transduction histidine-protein kinase BaeS; 99.97
TIGR03785703 marine_sort_HK proteobacterial dedicated sortase s 99.97
COG5000712 NtrY Signal transduction histidine kinase involved 99.97
PRK10600569 nitrate/nitrite sensor protein NarX; Provisional 99.97
PRK10755356 sensor protein BasS/PmrB; Provisional 99.97
COG3850574 NarQ Signal transduction histidine kinase, nitrate 99.96
TIGR01386457 cztS_silS_copS heavy metal sensor kinase. Members 99.96
PRK09470461 cpxA two-component sensor protein; Provisional 99.96
PRK09835482 sensor kinase CusS; Provisional 99.96
TIGR02966333 phoR_proteo phosphate regulon sensor kinase PhoR. 99.96
PRK09467435 envZ osmolarity sensor protein; Provisional 99.95
PRK10337449 sensor protein QseC; Provisional 99.95
PRK11073348 glnL nitrogen regulation protein NR(II); Provision 99.95
PRK11100475 sensory histidine kinase CreC; Provisional 99.95
PRK11360607 sensory histidine kinase AtoS; Provisional 99.95
PRK11644495 sensory histidine kinase UhpB; Provisional 99.94
PRK13557 540 histidine kinase; Provisional 99.94
COG0642336 BaeS Signal transduction histidine kinase [Signal 99.93
COG4192673 Signal transduction histidine kinase regulating ph 99.92
PRK13560807 hypothetical protein; Provisional 99.92
COG3290537 CitA Signal transduction histidine kinase regulati 99.92
PRK11086542 sensory histidine kinase DcuS; Provisional 99.92
PRK10935565 nitrate/nitrite sensor protein NarQ; Provisional 99.91
PRK15053545 dpiB sensor histidine kinase DpiB; Provisional 99.89
COG3851497 UhpB Signal transduction histidine kinase, glucose 99.87
KOG0519 786 consensus Sensory transduction histidine kinase [S 99.85
PRK13559361 hypothetical protein; Provisional 99.84
COG4585365 Signal transduction histidine kinase [Signal trans 99.83
PF02518111 HATPase_c: Histidine kinase-, DNA gyrase B-, and H 99.83
COG4564459 Signal transduction histidine kinase [Signal trans 99.8
PRK10547 670 chemotaxis protein CheA; Provisional 99.73
COG3920221 Signal transduction histidine kinase [Signal trans 99.66
COG0643 716 CheA Chemotaxis protein histidine kinase and relat 99.62
COG2972456 Predicted signal transduction protein with a C-ter 99.57
smart00387111 HATPase_c Histidine kinase-like ATPases. Histidine 99.51
PRK04184 535 DNA topoisomerase VI subunit B; Validated 99.49
PRK15429686 formate hydrogenlyase transcriptional activator Fh 99.45
PRK11061 748 fused phosphoenolpyruvate-protein phosphotransfera 99.39
TIGR01925137 spIIAB anti-sigma F factor. This model describes t 99.34
cd00075103 HATPase_c Histidine kinase-like ATPases; This fami 99.33
PRK14868 795 DNA topoisomerase VI subunit B; Provisional 99.32
PRK03660146 anti-sigma F factor; Provisional 99.31
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 99.28
TIGR01817534 nifA Nif-specific regulatory protein. This model r 99.27
PRK14867 659 DNA topoisomerase VI subunit B; Provisional 99.23
PRK04069161 serine-protein kinase RsbW; Provisional 99.19
KOG0787414 consensus Dehydrogenase kinase [Signal transductio 99.15
PF13492129 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_ 99.11
PF0051268 HisKA: His Kinase A (phospho-acceptor) domain; Int 99.06
TIGR01924159 rsbW_low_gc serine-protein kinase RsbW. This model 99.03
PF01590154 GAF: GAF domain; InterPro: IPR003018 This domain i 99.02
PRK05022509 anaerobic nitric oxide reductase transcription reg 99.0
PRK15429 686 formate hydrogenlyase transcriptional activator Fh 98.94
smart00065149 GAF Domain present in phytochromes and cGMP-specif 98.85
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 98.83
PF14501100 HATPase_c_5: GHKL domain 98.8
COG3605 756 PtsP Signal transduction protein containing GAF an 98.63
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 98.56
PF13581125 HATPase_c_2: Histidine kinase-like ATPase domain 98.51
COG3604550 FhlA Transcriptional regulator containing GAF, AAA 98.4
TIGR00585 312 mutl DNA mismatch repair protein MutL. All protein 98.35
COG2172146 RsbW Anti-sigma regulatory factor (Ser/Thr protein 98.29
smart0038866 HisKA His Kinase A (phosphoacceptor) domain. Dimer 98.27
COG2203175 FhlA FOG: GAF domain [Signal transduction mechanis 98.16
PRK13558665 bacterio-opsin activator; Provisional 98.12
cd0008265 HisKA Histidine Kinase A (dimerization/phosphoacce 97.92
PRK00095 617 mutL DNA mismatch repair protein; Reviewed 97.84
KOG0519 786 consensus Sensory transduction histidine kinase [S 97.8
PF13589137 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and 97.76
COG1956163 GAF domain-containing protein [Signal transduction 97.69
TIGR02851180 spore_V_T stage V sporulation protein T. Members o 97.27
PF11849174 DUF3369: Domain of unknown function (DUF3369); Int 97.2
PRK05644 638 gyrB DNA gyrase subunit B; Validated 96.72
PRK05218 613 heat shock protein 90; Provisional 96.66
PRK05559 631 DNA topoisomerase IV subunit B; Reviewed 96.59
COG0323 638 MutL DNA mismatch repair enzyme (predicted ATPase) 96.55
PF04340225 DUF484: Protein of unknown function, DUF484; Inter 96.52
PRK14083 601 HSP90 family protein; Provisional 96.52
COG0326 623 HtpG Molecular chaperone, HSP90 family [Posttransl 96.29
PTZ00272 701 heat shock protein 83 kDa (Hsp83); Provisional 96.16
COG5385214 Uncharacterized protein conserved in bacteria [Fun 96.14
TIGR01059 654 gyrB DNA gyrase, B subunit. This model describes t 95.97
TIGR01055 625 parE_Gneg DNA topoisomerase IV, B subunit, proteob 95.6
PF0756876 HisKA_2: Histidine kinase; InterPro: IPR011495 Two 95.53
smart00433 594 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras 95.46
COG5381184 Uncharacterized protein conserved in bacteria [Fun 95.4
PTZ00130 814 heat shock protein 90; Provisional 95.36
PF10090182 DUF2328: Uncharacterized protein conserved in bact 94.86
PRK10963223 hypothetical protein; Provisional 94.67
COG4251750 Bacteriophytochrome (light-regulated signal transd 94.31
PRK14939 756 gyrB DNA gyrase subunit B; Provisional 93.98
KOG1979 694 consensus DNA mismatch repair protein - MLH1 famil 92.46
COG3159218 Uncharacterized protein conserved in bacteria [Fun 91.82
KOG1978 672 consensus DNA mismatch repair protein - MLH2/PMS1/ 91.7
PLN03237 1465 DNA topoisomerase 2; Provisional 90.67
PF1468962 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical do 89.36
PTZ00108 1388 DNA topoisomerase 2-like protein; Provisional 89.23
KOG1977 1142 consensus DNA mismatch repair protein - MLH3 famil 89.22
PF06018177 CodY: CodY GAF-like domain; InterPro: IPR010312 Th 88.03
TIGR01058 637 parE_Gpos DNA topoisomerase IV, B subunit, Gram-po 88.02
PHA02569 602 39 DNA topoisomerase II large subunit; Provisional 87.08
PLN03128 1135 DNA topoisomerase 2; Provisional 85.46
PF11152195 DUF2930: Protein of unknown function (DUF2930); In 82.6
PF0658082 His_kinase: Histidine kinase; InterPro: IPR010559 82.43
COG0187 635 GyrB Type IIA topoisomerase (DNA gyrase/topo II, t 81.71
PF0773068 HisKA_3: Histidine kinase; InterPro: IPR011712 Two 80.59
PTZ00109 903 DNA gyrase subunit b; Provisional 80.18
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.4e-52  Score=427.53  Aligned_cols=474  Identities=22%  Similarity=0.334  Sum_probs=374.1

Q ss_pred             hhHHHHHHHhhHhHHHHHHHHhcCCCCchHHHHHHHHHHHHhhh-------HHHhhHHhc---ccchhHHHHHHHHHHHH
Q 007434           24 SDFFIALAYFSIPLELIYFVKKSAVFPYRWVLVQFGAFIVLCGA-------THLINLWTF---NMHSRTVAIVMTTAKVL   93 (604)
Q Consensus        24 sd~~ia~ay~~ip~~l~y~~~~~~~~~~~~~~~lf~~fi~~cg~-------thl~~i~~~---~~~~~~~~~~~~~~k~~   93 (604)
                      .|.++++.++.+-..+..+..+.-+...-.++.+.|.++++.-.       .-+++++.|   +.++.....+.....++
T Consensus       397 ~~~l~a~~~~a~~t~i~~~l~~~~~~~ni~mvFllgVlv~av~~g~~pa~~aailsvl~fNyFF~ePryTf~v~d~~y~v  476 (890)
T COG2205         397 RDYLVAILICALATAIAIQLDKFFDLANIVMLFLLGVLVVAVLTGRWPAVLAALLSVLVFNYFFTEPRYTFAVSDPQYLV  476 (890)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhheecCCceEEEEecCchHH
Confidence            57777888887777777665554444444443333333322111       112223222   11122223344566888


Q ss_pred             HHHHHHHHHHHHHHhhhhhccccCHHHHHHHHHHHHHHHHHHhhhHHHHhHHHHHHHHHHhccCCHHHHHHHHHHHhhhh
Q 007434           94 TAVVSCATALMLVHIIPDLLSVKTRELFLKNKAAELDREMGLIRTQEETGRHVRMLTHEIRSTLDRHTILKTTLVELGRT  173 (604)
Q Consensus        94 ta~vs~~tai~l~~llp~~l~l~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~il~~~~~~~~~~  173 (604)
                      |..|++++|++...+                 +..++++.+..++++++.+.|+++++.|+.+.+.++++..+.+.+.++
T Consensus       477 Tf~vml~vai~t~~L-----------------t~~vr~Qa~~ar~r~~rT~~Lye~s~~L~~a~t~~~vl~~~~~qi~~~  539 (890)
T COG2205         477 TFAVMLAVALLTGNL-----------------TARVREQARAARRREQRTELLYEFSKKLAGARTREDILAAAGQQIASL  539 (890)
T ss_pred             HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            999999999999998                 888999999999999999999999999999999999999999999999


Q ss_pred             hcCCeeEEEeecCCCCeEEEEEeeccCCCCcccccCCChhHHHHhhcCCeEEeCCCCccccccccccccCCCceeEEEec
Q 007434          174 LALEECALWMPTRTGLELQLSYTLRQQNPVGYTVPIQLPVINQVFSSNHAVKISPNCPVARLRPLAGKYMPGEVVAVRVP  253 (604)
Q Consensus       174 l~~~~~~i~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~p  253 (604)
                      ++.. +.+++++.++....+.+      +.+ -.+.+.....|++.++++.....+.-                      
T Consensus       540 ~~~~-v~i~l~~~~~~~~~~~~------~~~-l~~~d~aaa~W~~~~~~~AG~gTdTl----------------------  589 (890)
T COG2205         540 LNQR-VVILLPDDNGKLQPLGN------PDG-LSADDRAAAQWAFENGKPAGAGTDTL----------------------  589 (890)
T ss_pred             hCCc-eEEEEecCCcccccccC------Ccc-ccHHHHHHhhchhhCCCccccCCCCC----------------------
Confidence            9977 66777776655311111      111 12234568899999999887765542                      


Q ss_pred             cccccccccCCcccccccceEEEEEEecCCCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 007434          254 LLHLSNFQINDWPELSTKRYALMVLMLPSDSARQWHVHELELVEVVADQVAVALSHAAILEESMRARDLLMQQNIALDSA  333 (604)
Q Consensus       254 l~~~~~~~~~~~p~l~~~~~~~gvl~~~~~~~~~~~~~e~~ll~~la~~~a~al~~a~l~~~~~~~~~~l~~~~~~l~~~  333 (604)
                          .+..+.++| +..++.+.|++.+.........+++..++.++++|+|.|+++..+.++.++.+-+           
T Consensus       590 ----pg~~~~~lP-l~~~~~~~gvlgv~~~~~~ll~p~~~rlL~a~~~q~AlAler~~L~~~~~~a~l~-----------  653 (890)
T COG2205         590 ----PGAKYLYLP-LKSGGKVLGVLGVEPGLSPLLAPEQRRLLDAVLTQIALALERVTLAEEAEQARLA-----------  653 (890)
T ss_pred             ----CCCceeEee-cccCCceEEEEEecCCCCccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence                111234455 7777888889888888777799999999999999999999999998875443322           


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCc
Q 007434          334 RREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET--EL-TPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSL  410 (604)
Q Consensus       334 ~~~~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~--~~-~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~  410 (604)
                         . ++.+.++.|++++||||||||++|.|.++.|...  .. +++..+.+..|.+.++++..++.+|++++|++.+.+
T Consensus       654 ---~-e~E~lRsaLL~sISHDLRTPLt~i~Gaa~tL~~~~~~l~~~~~aeLl~~I~ees~~L~rlV~NLLdmTRi~sG~~  729 (890)
T COG2205         654 ---A-ERERLRSALLASISHDLRTPLTAIMGAAETLLLDGEALSPEDRAELLSSIREESERLTRLVTNLLDMTRLQSGGV  729 (890)
T ss_pred             ---H-HHHHHHHHHHHHhhccccCcHHHHhhhHHHhhhcccccCcHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCc
Confidence               1 2226778999999999999999999999998753  33 445788999999999999999999999999999999


Q ss_pred             ceeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCc-EEEEEEEecc
Q 007434          411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN-ISITGFVAKS  489 (604)
Q Consensus       411 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~-i~i~~~~~~~  489 (604)
                      +++.++..+.+++.+++..++.....+  .+.++++.+++ ++..|...++||+.||++||.||++++. |.|.+..+.+
T Consensus       730 ~l~~~~~~veEvVg~Al~r~~k~~~~~--~i~v~~~~dl~-li~~D~~LieQVLiNLleNA~Kyap~~s~I~I~~~~~~~  806 (890)
T COG2205         730 NLKLDWVLVEEVVGEALQRLRKRFTGH--KIVVSVPVDLP-LIHVDSPLIEQVLINLLENALKYAPPGSEIRINAGVERE  806 (890)
T ss_pred             ccccchhhHHHHHHHHHHHhhhhcCCc--eEEEecCCCCc-eEecCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEEEecc
Confidence            999999999999999999888655444  47777777776 5788999999999999999999998665 9999998887


Q ss_pred             cccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEE
Q 007434          490 ESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIE  569 (604)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~  569 (604)
                      .                    +.|+|.|+|+|||++.+++||++|++..+..  ...|.||||+||+.||+.|||+|++.
T Consensus       807 ~--------------------v~~~V~DeGpGIP~~~~~~IFD~F~r~~~~~--~~~G~GLGLsIc~~iv~ahgG~I~a~  864 (890)
T COG2205         807 N--------------------VVFSVIDEGPGIPEGELERIFDKFYRGNKES--ATRGVGLGLAICRGIVEAHGGTISAE  864 (890)
T ss_pred             e--------------------EEEEEEeCCCCCChhHHHHhhhhhhcCCCCC--CCCCccccHHHHHHHHHHcCCeEEEE
Confidence            5                    9999999999999999999999999988743  37899999999999999999999999


Q ss_pred             ecCCCceEEEEEEEEecCCCC
Q 007434          570 SEGLGKGCTAIFIVKLGIPEH  590 (604)
Q Consensus       570 s~~~g~Gt~~~~~lp~~~~~~  590 (604)
                      +. +++|++|+|+||....+.
T Consensus       865 ~~-~~gGa~f~~~LP~~~~~~  884 (890)
T COG2205         865 NN-PGGGAIFVFTLPVEEDPP  884 (890)
T ss_pred             Ec-CCCceEEEEEeecCCCCc
Confidence            98 899999999999986654

>PRK10490 sensor protein KdpD; Provisional Back     alignment and domain information
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase Back     alignment and domain information
>PRK13837 two-component VirA-like sensor kinase; Provisional Back     alignment and domain information
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK09303 adaptive-response sensory kinase; Validated Back     alignment and domain information
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional Back     alignment and domain information
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] Back     alignment and domain information
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms] Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>PRK11006 phoR phosphate regulon sensor protein; Provisional Back     alignment and domain information
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] Back     alignment and domain information
>PRK10604 sensor protein RstB; Provisional Back     alignment and domain information
>PRK10364 sensor protein ZraS; Provisional Back     alignment and domain information
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL Back     alignment and domain information
>PRK10815 sensor protein PhoQ; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional Back     alignment and domain information
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase Back     alignment and domain information
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] Back     alignment and domain information
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional Back     alignment and domain information
>PRK10755 sensor protein BasS/PmrB; Provisional Back     alignment and domain information
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] Back     alignment and domain information
>TIGR01386 cztS_silS_copS heavy metal sensor kinase Back     alignment and domain information
>PRK09470 cpxA two-component sensor protein; Provisional Back     alignment and domain information
>PRK09835 sensor kinase CusS; Provisional Back     alignment and domain information
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR Back     alignment and domain information
>PRK09467 envZ osmolarity sensor protein; Provisional Back     alignment and domain information
>PRK10337 sensor protein QseC; Provisional Back     alignment and domain information
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional Back     alignment and domain information
>PRK11100 sensory histidine kinase CreC; Provisional Back     alignment and domain information
>PRK11360 sensory histidine kinase AtoS; Provisional Back     alignment and domain information
>PRK11644 sensory histidine kinase UhpB; Provisional Back     alignment and domain information
>PRK13557 histidine kinase; Provisional Back     alignment and domain information
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] Back     alignment and domain information
>PRK13560 hypothetical protein; Provisional Back     alignment and domain information
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] Back     alignment and domain information
>PRK11086 sensory histidine kinase DcuS; Provisional Back     alignment and domain information
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional Back     alignment and domain information
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional Back     alignment and domain information
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK13559 hypothetical protein; Provisional Back     alignment and domain information
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00387 HATPase_c Histidine kinase-like ATPases Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional Back     alignment and domain information
>TIGR01925 spIIAB anti-sigma F factor Back     alignment and domain information
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins Back     alignment and domain information
>PRK14868 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK03660 anti-sigma F factor; Provisional Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>TIGR01817 nifA Nif-specific regulatory protein Back     alignment and domain information
>PRK14867 DNA topoisomerase VI subunit B; Provisional Back     alignment and domain information
>PRK04069 serine-protein kinase RsbW; Provisional Back     alignment and domain information
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF13492 GAF_3: GAF domain; PDB: 3EEA_A 4DMZ_A 4DN0_A 1VHM_A Back     alignment and domain information
>PF00512 HisKA: His Kinase A (phospho-acceptor) domain; InterPro: IPR003661 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW Back     alignment and domain information
>PF01590 GAF: GAF domain; InterPro: IPR003018 This domain is present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional Back     alignment and domain information
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional Back     alignment and domain information
>smart00065 GAF Domain present in phytochromes and cGMP-specific phosphodiesterases Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>PF14501 HATPase_c_5: GHKL domain Back     alignment and domain information
>COG3605 PtsP Signal transduction protein containing GAF and PtsI domains [Signal transduction mechanisms] Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain Back     alignment and domain information
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] Back     alignment and domain information
>TIGR00585 mutl DNA mismatch repair protein MutL Back     alignment and domain information
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] Back     alignment and domain information
>smart00388 HisKA His Kinase A (phosphoacceptor) domain Back     alignment and domain information
>COG2203 FhlA FOG: GAF domain [Signal transduction mechanisms] Back     alignment and domain information
>PRK13558 bacterio-opsin activator; Provisional Back     alignment and domain information
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase Back     alignment and domain information
>PRK00095 mutL DNA mismatch repair protein; Reviewed Back     alignment and domain information
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B Back     alignment and domain information
>COG1956 GAF domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02851 spore_V_T stage V sporulation protein T Back     alignment and domain information
>PF11849 DUF3369: Domain of unknown function (DUF3369); InterPro: IPR021800 This domain is functionally uncharacterised Back     alignment and domain information
>PRK05644 gyrB DNA gyrase subunit B; Validated Back     alignment and domain information
>PRK05218 heat shock protein 90; Provisional Back     alignment and domain information
>PRK05559 DNA topoisomerase IV subunit B; Reviewed Back     alignment and domain information
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function Back     alignment and domain information
>PRK14083 HSP90 family protein; Provisional Back     alignment and domain information
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional Back     alignment and domain information
>COG5385 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>TIGR01059 gyrB DNA gyrase, B subunit Back     alignment and domain information
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial Back     alignment and domain information
>PF07568 HisKA_2: Histidine kinase; InterPro: IPR011495 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>smart00433 TOP2c TopoisomeraseII Back     alignment and domain information
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PTZ00130 heat shock protein 90; Provisional Back     alignment and domain information
>PF10090 DUF2328: Uncharacterized protein conserved in bacteria (DUF2328); InterPro: IPR018762 Members of this family of hypothetical bacterial proteins have no known function Back     alignment and domain information
>PRK10963 hypothetical protein; Provisional Back     alignment and domain information
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms] Back     alignment and domain information
>PRK14939 gyrB DNA gyrase subunit B; Provisional Back     alignment and domain information
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair] Back     alignment and domain information
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair] Back     alignment and domain information
>PLN03237 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B Back     alignment and domain information
>PTZ00108 DNA topoisomerase 2-like protein; Provisional Back     alignment and domain information
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair] Back     alignment and domain information
>PF06018 CodY: CodY GAF-like domain; InterPro: IPR010312 This family consists of several bacterial GTP-sensing transcriptional pleiotropic repressor CodY proteins Back     alignment and domain information
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive Back     alignment and domain information
>PHA02569 39 DNA topoisomerase II large subunit; Provisional Back     alignment and domain information
>PLN03128 DNA topoisomerase 2; Provisional Back     alignment and domain information
>PF11152 DUF2930: Protein of unknown function (DUF2930); InterPro: IPR021325 This family of proteins has no known function Back     alignment and domain information
>PF06580 His_kinase: Histidine kinase; InterPro: IPR010559 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>PTZ00109 DNA gyrase subunit b; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
2c2a_A258 Structure Of The Entire Cytoplasmic Portion Of A Se 6e-18
3dge_A258 Structure Of A Histidine Kinase-response Regulator 6e-18
4ew8_A268 Crystal Structure Of A C-Terminal Part Of Tyrosine 2e-14
3sl2_A177 Atp Forms A Stable Complex With The Essential Histi 6e-11
3d36_A244 How To Switch Off A Histidine Kinase: Crystal Struc 6e-09
3a0r_A349 Crystal Structure Of Histidine Kinase Thka (Tm1359) 9e-09
3a0t_A152 Catalytic Domain Of Histidine Kinase Thka (Tm1359) 5e-06
1bxd_A161 Nmr Structure Of The Histidine Kinase Domain Of The 7e-04
>pdb|2C2A|A Chain A, Structure Of The Entire Cytoplasmic Portion Of A Sensor Histidine Kinase Protein Length = 258 Back     alignment and structure 
Iteration: 1

 Score = 89.4 bits (220), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 117/238 (49%), Gaps = 26/238 (10%)
Query: 346 DFLAVMNHEMRTPMHAIIALSSL----LQETELTPEQRLMVETILKSSNLLATLINDVLD 401
           +F+A ++HE+RTP+ AI A +      L E +L+  +  + E I+  SN L  L+N++LD
Sbjct: 22  EFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFL-EVIIDQSNHLENLLNELLD 80
Query: 402 LSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLM 461
            SRLE  SLQ+     +L  +    +N IK  AS   + V        P  A  D  R+ 
Sbjct: 81  FSRLERKSLQINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIR 140
Query: 462 QTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPI--ENHFYLRVQVKDSG 519
           Q LLN++ N VK++K+                   AP+ +   I  E    + + V+D+G
Sbjct: 141 QVLLNLLNNGVKYSKKD------------------APDKYVKVILDEKDGGVLIIVEDNG 182
Query: 520 SGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGC 577
            GI       +F +F +  +       G+GLGLAI K  V L  G IW+ESE +GKG 
Sbjct: 183 IGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGKGS 239
>pdb|3DGE|A Chain A, Structure Of A Histidine Kinase-response Regulator Complex Reveals Insights Into Two-component Signaling And A Novel Cis- Autophosphorylation Mechanism Length = 258 Back     alignment and structure
>pdb|4EW8|A Chain A, Crystal Structure Of A C-Terminal Part Of Tyrosine Kinase (Divl) From Caulobacter Crescentus Cb15 At 2.50 A Resolution Length = 268 Back     alignment and structure
>pdb|3SL2|A Chain A, Atp Forms A Stable Complex With The Essential Histidine Kinase Walk (yycg) Domain Length = 177 Back     alignment and structure
>pdb|3D36|A Chain A, How To Switch Off A Histidine Kinase: Crystal Structure Of Geobacillus Stearothermophilus Kinb With The Inhibitor Sda Length = 244 Back     alignment and structure
>pdb|3A0R|A Chain A, Crystal Structure Of Histidine Kinase Thka (Tm1359) In Complex With Response Regulator Protein Trra (Tm1360) Length = 349 Back     alignment and structure
>pdb|3A0T|A Chain A, Catalytic Domain Of Histidine Kinase Thka (Tm1359) In Complex With Adp And Mg Ion (Trigonal) Length = 152 Back     alignment and structure
>pdb|1BXD|A Chain A, Nmr Structure Of The Histidine Kinase Domain Of The E. Coli Osmosensor Envz Length = 161 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query604
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 4e-77
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 1e-69
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 3e-34
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 2e-31
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 7e-30
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 2e-29
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 2e-28
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 2e-27
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 9e-26
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 3e-25
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 7e-23
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 3e-22
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 7e-21
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 4e-20
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 9e-20
3p01_A184 Two-component response regulator; PSI-2, midwest c 2e-19
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 1e-18
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 3e-18
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 4e-16
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 4e-16
4fmt_A228 CHPT protein; A phosphotransfer protein, A two-com 2e-10
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 5e-10
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 7e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 3e-09
2qyb_A181 Membrane protein, putative; GAF domain, domain of 4e-07
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 2e-06
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 9e-06
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 5e-05
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Length = 268 Back     alignment and structure
 Score =  244 bits (626), Expect = 4e-77
 Identities = 74/258 (28%), Positives = 118/258 (45%), Gaps = 30/258 (11%)

Query: 329 ALDSARREAETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET-ELTPEQRLMVETILK 387
           AL         A R + DF+  +++E+RTP+  II  S LL+    ++   R  V  +  
Sbjct: 25  ALADRSAALAEAERLKRDFVGNVSYELRTPLTTIIGYSELLERADGISERGRNHVAAVRA 84

Query: 388 SSNLLATLINDVLDLSRLEDGSLQLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAP 447
           ++  LA  I+DVLD+++++ G + L+I    +  +           A +  + +A+    
Sbjct: 85  AATQLARSIDDVLDMAQIDAGEMALEIEDIRVSDLLLNAQERALKDAQLGGVTLAVECEE 144

Query: 448 DLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIEN 507
           D+     GD KRL QTL ++V NA++ T  G     G V    +L   RA          
Sbjct: 145 DVGL-IRGDGKRLAQTLDHLVENALRQTPPG-----GRV----TLSARRALG-------- 186

Query: 508 HFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIW 567
              +R+ V D+G G+      ++F +F        R+  G GLGLA+ K  V L  G + 
Sbjct: 187 --EVRLDVSDTGRGVPFHVQAHIFDRFVG------RDRGGPGLGLALVKALVELHGGWVA 238

Query: 568 IESEGLGKGCTAIFIVKL 585
           +ESE  G G T  F   L
Sbjct: 239 LESE-PGNGST--FTCHL 253
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Length = 258 Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Length = 349 Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Length = 177 Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Length = 244 Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Length = 222 Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Length = 388 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Length = 152 Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Length = 394 Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Length = 394 Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Length = 419 Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Length = 407 Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Length = 471 Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Length = 160 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Length = 530 Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Length = 184 Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Length = 152 Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Length = 161 Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Length = 150 Back     alignment and structure
>4fmt_A CHPT protein; A phosphotransfer protein, A two-component signaling pathway structural genomics, joint center for structural genomics; 2.30A {Caulobacter crescentus} Length = 228 Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Length = 165 Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Length = 145 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Length = 177 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Length = 181 Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Length = 181 Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Length = 171 Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Length = 171 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query604
2c2a_A258 Sensor histidine kinase; phosphotransfer, PHOQ, se 100.0
4ew8_A268 Sensor protein DIVL; signal transduction, two-comp 100.0
1gkz_A388 [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] 100.0
3d36_A244 Sporulation kinase B; GHKL ATPase, four helix bund 100.0
3jz3_A222 Sensor protein QSEC; helix-turn-helix, kinase doma 100.0
3a0r_A349 Sensor protein; four helix bundle, PAS fold, kinas 99.98
2e0a_A394 Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP 99.97
4fpp_A247 Phosphotransferase; four helix bundle, bergerat fo 99.97
2btz_A394 Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo 99.97
2q8g_A407 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.97
1y8o_A419 [pyruvate dehydrogenase [lipoamide]] kinase isozy; 99.97
3ehh_A218 Sensor kinase (YOCF protein); four-helix bundle, G 99.94
1b3q_A 379 Protein (chemotaxis protein CHEA); histine kinase, 99.94
1id0_A152 PHOQ histidine kinase; PHOQ/PHOP, signal transduct 99.93
1ysr_A150 Sensor-type histidine kinase PRRB; ATP-binding dom 99.92
1bxd_A161 ENVZ(290-450), protein (osmolarity sensor protein 99.91
3a0y_A152 Sensor protein; ATP-LID, kinase, phosphoprotein, t 99.91
3sl2_A177 Sensor histidine kinase YYCG; ATP binding, intact 99.91
1r62_A160 Nitrogen regulation protein NR(II); PII, histidine 99.91
1i58_A189 Chemotaxis protein CHEA; beta-alpha sandwich, sign 99.89
3ehg_A128 Sensor kinase (YOCF protein); GHL ATPase domain, t 99.85
3zxo_A129 Redox sensor histidine kinase response regulator; 99.82
3zxq_A124 Hypoxia sensor histidine kinase response regulato; 99.81
1th8_A145 Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s 99.73
1mu5_A 471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 99.66
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 99.65
3p01_A184 Two-component response regulator; PSI-2, midwest c 99.65
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 99.61
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 99.59
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 99.59
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 99.57
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 99.55
3o5y_A165 Sensor protein; GAF domain, histidine, kinase, PSI 99.51
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 99.51
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 99.47
4glq_A171 Methyl-accepting chemotaxis protein; chromophore, 99.47
2q2e_B 621 Type 2 DNA topoisomerase 6 subunit B; DNA-binding, 99.43
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 99.42
2lb5_A208 Sensor histidine kinase; PCB, transferase, GAF dom 99.39
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 99.34
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.34
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 99.34
2qyb_A181 Membrane protein, putative; GAF domain, domain of 99.32
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.32
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 99.31
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 99.3
3hcy_A151 Putative two-component sensor histidine kinase PR; 99.29
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 99.28
1vhm_A195 Protein YEBR; structural genomics, unknown functio 99.25
3cit_A160 Sensor histidine kinase; MEGA: 3.30.450.40, struct 99.24
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 99.17
3ibj_A 691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 99.1
2ool_A337 Sensor protein; bacteriophytochrome, photoconversi 99.09
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 99.08
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 99.07
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 99.05
3zq5_A520 Phytochrome-like protein CPH1; arginine finger, ta 99.04
3nhq_A505 Bacteriophytochrome; photoreceptor, PAS, signaling 99.03
2k2n_A172 Sensor protein, SYB-CPH1(GAF); phytochrome, GAF do 99.02
4e04_A327 Bacteriophytochrome (light-regulated signal trans 99.01
3s7o_A343 Bacteriophytochrome; biliverdin, PAS, GAF, photore 98.98
3eea_A162 GAF domain/HD domain protein; structural genomics, 98.92
3bjc_A 878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.8
3bjc_A878 CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5 98.76
4eho_A635 Bacteriophytochrome, PAS/PAC sensor; photoreceptor 98.65
3na3_A 348 DNA mismatch repair protein MLH1; MUTL protein hom 98.63
1b63_A 333 MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A 98.59
1h7s_A 365 PMS1 protein homolog 2; DNA repair, GHL ATPase, mi 98.58
3ke6_A399 Protein RV1364C/MT1410; anti-sigma factor, anti-si 98.58
3h4l_A 367 DNA mismatch repair protein PMS1; ATP binding, DNA 98.51
1kij_A 390 DNA gyrase subunit B; topoisomerase, gyrase B-coum 98.44
1ixm_A192 SPO0B, protein (sporulation response regulatory pr 98.39
2wer_A220 ATP-dependent molecular chaperone HSP82; ATPase, A 98.13
3zcc_A114 HAMP, osmolarity sensor protein ENVZ; signaling pr 98.05
1yc1_A264 HSP 86, heat shock protein HSP 90-alpha; cell-cycl 97.87
2ior_A235 Chaperone protein HTPG; heat shock protein, HSP90; 97.85
1qy5_A269 Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N 97.83
3t0h_A228 Heat shock protein HSP 90-alpha; chaperone, ATPase 97.64
1s16_A 390 Topoisomerase IV subunit B; two-domain protein com 97.63
3zrx_A115 AF1503 protein, osmolarity sensor protein ENVZ; si 97.49
1ei1_A 391 DNA gyrase B, GYRB; ATPase domain, dimer, isomeras 97.47
3o0i_A256 HSP90AA1 protein; HSP90 heat-shock proteins, chape 97.45
2gqp_A236 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 97.43
3peh_A281 Endoplasmin homolog; structural genomics, structur 97.39
1y4s_A 559 Chaperone protein HTPG; HSP90, molecular chaperone 97.24
3nmq_A239 Heat shock protein HSP 90-beta; ATPase, chaperone- 97.23
3cwv_A 369 DNA gyrase, B subunit, truncated; structural genom 97.19
3fv5_A201 DNA topoisomerase 4 subunit B; topoisomerase IV B 97.16
4eu0_A298 PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A 97.11
2cg9_A 677 ATP-dependent molecular chaperone HSP82; chaperone 97.04
1zxm_A 400 TOPO IIA ATPase, DNA topoisomerase II, alpha isozy 96.93
2ioq_A 624 Chaperone protein HTPG; heat shock protein, HSP90; 96.92
4duh_A220 DNA gyrase subunit B; structure-based drug design, 96.9
4emv_A226 DNA topoisomerase IV, B subunit; protein-inhibitor 96.79
2w1r_A123 Spovt, stage V sporulation protein T; regulatory G 96.79
2o1u_A 666 Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, 96.73
3ttz_A198 DNA gyrase subunit B; protein-inhibitor complex, A 96.31
1pvg_A 418 DNA topoisomerase II; GHKL ATPase domain; HET: DNA 96.29
3ied_A272 Heat shock protein; HSP90, chaperone, structural g 96.04
3e98_A252 GAF domain of unknown function; structural genomic 95.79
3mm4_A 206 Histidine kinase homolog; receiver domain, CKI1, c 95.53
3lnu_A 408 Topoisomerase IV subunit B; PARE, ATP-binding, nuc 95.38
4gfh_A 1177 DNA topoisomerase 2; topoisomerase, protein-DNA co 93.26
>2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-36  Score=292.74  Aligned_cols=231  Identities=31%  Similarity=0.460  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcC---CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCccee
Q 007434          337 AETAIRARNDFLAVMNHEMRTPMHAIIALSSLLQET---ELTPEQRLMVETILKSSNLLATLINDVLDLSRLEDGSLQLQ  413 (604)
Q Consensus       337 ~~~~~~~~~~l~~~i~Hel~~pL~~i~~~~~~l~~~---~~~~~~~~~l~~i~~~~~~l~~li~~l~~~~~~~~~~~~~~  413 (604)
                      +++..+.+.+|++.++|||||||++|.++++.+.+.   ...++.+++++.+...+.++..++++++++++.+.+.....
T Consensus        13 l~~~~~~~~~~~~~isHelrtPL~~i~~~~~~l~~~~~~~~~~~~~~~l~~i~~~~~~l~~li~~ll~~~~~~~~~~~~~   92 (258)
T 2c2a_A           13 LKRIDRMKTEFIANISHELRTPLTAIKAYAETIYNSLGELDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLERKSLQIN   92 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTGGGCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCc
Confidence            344456678999999999999999999999988653   23345678899999999999999999999999988888888


Q ss_pred             eeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCC----CcEEEEEEEecc
Q 007434          414 IGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKE----GNISITGFVAKS  489 (604)
Q Consensus       414 ~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~----g~i~i~~~~~~~  489 (604)
                      .+++++.+++++++..+...+..+++.+.+..+...+..+.+|+..+.|++.||+.||+||++.    +.|.|.+...++
T Consensus        93 ~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~  172 (258)
T 2c2a_A           93 REKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEKDG  172 (258)
T ss_dssp             CEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEETT
T ss_pred             cceecHHHHHHHHHHHHHHHHHHcCcEEEeecCCCCCceEEeCHHHHHHHHHHHHHHHHhcCcCCCCceeEEEEEecCCC
Confidence            8899999999999999998888899988887764445557789999999999999999999864    347777666554


Q ss_pred             cccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEEEE
Q 007434          490 ESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIE  569 (604)
Q Consensus       490 ~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~i~  569 (604)
                      .                    +.|+|+|||+||+++.++++|+||++++.......+|+|+||++||++++.|||+|+++
T Consensus       173 ~--------------------~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~G~GLGL~i~~~iv~~~gG~i~v~  232 (258)
T 2c2a_A          173 G--------------------VLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVE  232 (258)
T ss_dssp             E--------------------EEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEEEE
T ss_pred             e--------------------EEEEEEecCCCCCHHHHHhhccccccCCCCCCCCCCCcchHHHHHHHHHHHcCCEEEEE
Confidence            3                    89999999999999999999999999876544445699999999999999999999999


Q ss_pred             ecCCCceEEEEEEEEecCC
Q 007434          570 SEGLGKGCTAIFIVKLGIP  588 (604)
Q Consensus       570 s~~~g~Gt~~~~~lp~~~~  588 (604)
                      |. +|+||+|+|++|....
T Consensus       233 s~-~~~Gt~f~i~lP~~~~  250 (258)
T 2c2a_A          233 SE-VGKGSRFFVWIPKDRA  250 (258)
T ss_dssp             EE-TTTEEEEEEEEECCC-
T ss_pred             ec-CCCCcEEEEEeeCCCC
Confidence            99 8999999999998654
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} Back     alignment and structure
>1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* Back     alignment and structure
>3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} Back     alignment and structure
>3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} Back     alignment and structure
>3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} Back     alignment and structure
>2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* Back     alignment and structure
>4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A Back     alignment and structure
>2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* Back     alignment and structure
>2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A Back     alignment and structure
>1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* Back     alignment and structure
>3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* Back     alignment and structure
>1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A Back     alignment and structure
>1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A Back     alignment and structure
>1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A Back     alignment and structure
>1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 Back     alignment and structure
>3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A Back     alignment and structure
>3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} Back     alignment and structure
>1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 Back     alignment and structure
>1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* Back     alignment and structure
>3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} Back     alignment and structure
>3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>3p01_A Two-component response regulator; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG, signali protein; 2.65A {Nostoc SP} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3o5y_A Sensor protein; GAF domain, histidine, kinase, PSI, MCSG, structural genomics, midwest center for structural genomics, protein S initiative; 2.45A {Bacillus halodurans} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>4glq_A Methyl-accepting chemotaxis protein; chromophore, phytochrome, cyanobacteriochrome, phycoviolobil bilin, BILI-protein; HET: PVN; 1.77A {Thermosynechococcus elongatus} PDB: 4fof_A* Back     alignment and structure
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>2lb5_A Sensor histidine kinase; PCB, transferase, GAF domain, phosphoprotein; HET: CYC; NMR {Synechococcus SP} PDB: 2lb9_A* Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>3cit_A Sensor histidine kinase; MEGA: 3.30.450.40, structural genomics, sensor histidine KIN pseudomonas syringae, PSI-2; HET: MSE; 1.90A {Pseudomonas syringae PV} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>2ool_A Sensor protein; bacteriophytochrome, photoconversion, photoreceptor, biliver signaling protein; HET: LBV; 2.20A {Rhodopseudomonas palustris} SCOP: d.110.2.1 d.110.3.9 Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain, receptor, PAS domain, chromophore, sensory transduction; HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A* Back     alignment and structure
>3nhq_A Bacteriophytochrome; photoreceptor, PAS, signaling, signaling protei; HET: BLA; 2.55A {Pseudomonas aeruginosa} PDB: 3c2w_A* 3nop_C* 3not_C* 3nou_C* 3g6o_A* 3ibr_A* Back     alignment and structure
>2k2n_A Sensor protein, SYB-CPH1(GAF); phytochrome, GAF domain, phycocyanobilin, PCB, bacteriophytochrome, cyanobacterial phytochrome, kinase; HET: CYC; NMR {Synechococcus SP} SCOP: d.110.2.1 PDB: 2kli_A* 2koi_A* Back     alignment and structure
>4e04_A Bacteriophytochrome (light-regulated signal trans histidine kinase), PHYB1; bacteriophytochrome chromophore binding domain; HET: LBV; 1.79A {Rhodopseudomonas palustris} Back     alignment and structure
>3s7o_A Bacteriophytochrome; biliverdin, PAS, GAF, photoreceptor, fluorescent protein; HET: LBV GOL; 1.24A {Deinococcus radiodurans} PDB: 3s7n_A* 3s7p_A* 3s7q_A* 2o9c_A* 2o9b_A* 1ztu_A* Back     alignment and structure
>3eea_A GAF domain/HD domain protein; structural genomics, PSI, MCSG, protein structure initiative, midwest center for structural genomics; HET: PG6; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A 2k31_A* Back     alignment and structure
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} Back     alignment and structure
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* Back     alignment and structure
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* Back     alignment and structure
>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} Back     alignment and structure
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} Back     alignment and structure
>1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>1ixm_A SPO0B, protein (sporulation response regulatory protein); phosphotransferase, two component system; 2.60A {Bacillus subtilis} SCOP: d.123.1.1 PDB: 2ftk_A* 1f51_A Back     alignment and structure
>2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A Back     alignment and structure
>3zcc_A HAMP, osmolarity sensor protein ENVZ; signaling protein, signal transduction, membrane protein, signalling, chimera; 1.25A {Archaeoglobus fulgidus} PDB: 3zrw_A 3zrv_A 3zrx_A 3zrw_B 2lfr_A 2lfs_A 1joy_A 2l7h_A 2l7i_A 2y20_A 2y21_A 2y0q_A 2y0t_A Back     alignment and structure
>1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* Back     alignment and structure
>2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} Back     alignment and structure
>1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* Back     alignment and structure
>3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... Back     alignment and structure
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A Back     alignment and structure
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Back     alignment and structure
>3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* Back     alignment and structure
>2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* Back     alignment and structure
>3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* Back     alignment and structure
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A Back     alignment and structure
>3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 Back     alignment and structure
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Back     alignment and structure
>3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Back     alignment and structure
>4eu0_A PELD; C-DI-GMP, signaling protein; HET: C2E; 1.70A {Pseudomonas aeruginosa} PDB: 4euv_A* 4etz_A* 4etx_A 4dmz_A 4dn0_A* Back     alignment and structure
>2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} Back     alignment and structure
>1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Back     alignment and structure
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A Back     alignment and structure
>4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Back     alignment and structure
>4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Back     alignment and structure
>2w1r_A Spovt, stage V sporulation protein T; regulatory GAF domain of spovt, transcription, transcription regulation, repressor, activator; 1.50A {Bacillus subtilis} Back     alignment and structure
>2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A Back     alignment and structure
>3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Back     alignment and structure
>1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Back     alignment and structure
>3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} Back     alignment and structure
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa} Back     alignment and structure
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A Back     alignment and structure
>3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Back     alignment and structure
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 604
d2c2aa2161 d.122.1.3 (A:321-481) Sensor histidine kinase TM08 4e-35
d1ysra1148 d.122.1.3 (A:299-446) Sensor-type histidine kinase 3e-27
d1bxda_161 d.122.1.3 (A:) Histidine kinase domain of the osmo 1e-26
d1jm6a2190 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kin 1e-24
d1id0a_146 d.122.1.3 (A:) Histidine kinase PhoQ domain {Esche 1e-24
d1r62a_156 d.122.1.3 (A:) Nitrogen regulation protein NtrB, C 2e-19
d1gkza2193 d.122.1.4 (A:186-378) Branched-chain alpha-ketoaci 8e-19
d2hkja3219 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A 3e-14
d2c2aa189 a.30.2.1 (A:232-320) Sensor histidine kinase TM085 1e-10
d1i58a_189 d.122.1.3 (A:) Histidine kinase CheA {Thermotoga m 2e-09
d1joya_67 a.30.2.1 (A:) EnvZ histidine kinase {Escherichia c 2e-09
d1y8oa2125 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinas 1e-06
d1mc0a2154 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phos 4e-05
d1ixma_179 d.123.1.1 (A:) Sporulation response regulatory pro 5e-04
d2k2na1170 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synec 8e-04
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 161 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

 Score =  127 bits (321), Expect = 4e-35
 Identities = 50/175 (28%), Positives = 73/175 (41%), Gaps = 19/175 (10%)

Query: 411 QLQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGN 470
           Q+     +L  +    +N IK  AS   + V        P  A  D  R+ Q LLN++ N
Sbjct: 1   QINREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNN 60

Query: 471 AVKFTKEGNISITGFVAKSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNL 530
            VK++K+        V   E                    + + V+D+G GI       +
Sbjct: 61  GVKYSKKDAPDKYVKVILDE----------------KDGGVLIIVEDNGIGIPDHAKDRI 104

Query: 531 FTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIWIESEGLGKGCTAIFIVKL 585
           F +F +  +       G+GLGLAI K  V L  G IW+ESE +GKG    F V +
Sbjct: 105 FEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIWVESE-VGKGSR--FFVWI 156
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Length = 148 Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Length = 161 Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Length = 190 Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Length = 146 Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 156 Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 193 Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Length = 89 Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Length = 189 Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Length = 67 Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 125 Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Length = 154 Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Length = 179 Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Length = 170 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query604
d2c2aa2161 Sensor histidine kinase TM0853 {Thermotoga maritim 100.0
d1ysra1148 Sensor-type histidine kinase PrrB {Mycobacterium t 99.97
d1id0a_146 Histidine kinase PhoQ domain {Escherichia coli [Ta 99.97
d1bxda_161 Histidine kinase domain of the osmosensor EnvZ {Es 99.96
d1r62a_156 Nitrogen regulation protein NtrB, C-terminal domai 99.95
d1jm6a2190 Pyruvate dehydrogenase kinase {Rat (Rattus norvegi 99.94
d1gkza2193 Branched-chain alpha-ketoacid dehydrogenase kinase 99.94
d1ixma_179 Sporulation response regulatory protein Spo0B {Bac 99.7
d2hkja3219 Topoisomerase VI-B subunit {Archaeon Sulfolobus sh 99.59
d1th8a_139 Anti-sigma factor spoIIab {Bacillus stearothermoph 99.55
d1i58a_189 Histidine kinase CheA {Thermotoga maritima [TaxId: 99.52
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.5
d1mc0a2154 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 99.36
d1y8oa2125 Pyruvate dehydrogenase kinase {Human (Homo sapiens 99.23
d2c2aa189 Sensor histidine kinase TM0853 {Thermotoga maritim 99.19
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 99.19
d2k2na1170 Sensor protein CYB2465 {Synechococcus sp. [TaxId: 99.15
d2oola1194 Sensor protein PhyB2 {Rhodopseudomonas palustris [ 98.99
d2o9ca1187 Bacteriophytochrome BphP {Deinococcus radiodurans 98.99
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 98.85
d3c2wa1192 Bacteriophytochrome BphP {Pseudomonas aeruginosa [ 98.84
d2veaa1196 Phytochrome-like protein Cph1 {Synechocystis sp. p 98.79
d1joya_67 EnvZ histidine kinase {Escherichia coli [TaxId: 56 98.76
d1h7sa2203 DNA mismatch repair protein PMS2 {Human (Homo sapi 98.1
d1b63a2218 DNA mismatch repair protein MutL {Escherichia coli 97.85
d1s14a_168 Topoisomerase IV subunit B {Escherichia coli [TaxI 96.77
d1pvga2239 DNA topoisomerase II {Baker's yeast (Saccharomyces 96.45
d1kija2212 DNA gyrase B {Thermus thermophilus [TaxId: 274]} 96.25
d1ei1a2219 DNA gyrase B {Escherichia coli [TaxId: 562]} 96.22
d1uyla_208 HSP90 {Human (Homo sapiens) [TaxId: 9606]} 94.6
d2iwxa1213 HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T 94.56
d2gqpa1227 HSP90 {Dog (Canis familiaris) [TaxId: 9615]} 94.12
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2e-32  Score=239.55  Aligned_cols=154  Identities=29%  Similarity=0.432  Sum_probs=131.0

Q ss_pred             eeeeeecHHHHHHHHHHHhhhhhhccCcEEEEEeCCCCCcceEccHHHHHHHHHHHHHHHhhcCCCCc----EEEEEEEe
Q 007434          412 LQIGTFNLHAVFREVLNLIKPIASVKKLLVALNLAPDLPEYAVGDEKRLMQTLLNVVGNAVKFTKEGN----ISITGFVA  487 (604)
Q Consensus       412 ~~~~~~~l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~d~~~l~~il~nLl~NA~k~~~~g~----i~i~~~~~  487 (604)
                      ++++++|+.+++++++..++..+..+++.+.++.+.+.+..+.+|+.+|.||+.||++||+||++.+.    |.+.+...
T Consensus         2 l~~e~v~l~~li~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~D~~~l~qvl~NLi~NAik~t~~~~~~~~i~i~~~~~   81 (161)
T d2c2aa2           2 INREKVDLCDLVESAVNAIKEFASSHNVNVLFESNVPCPVEAYIDPTRIRQVLLNLLNNGVKYSKKDAPDKYVKVILDEK   81 (161)
T ss_dssp             CCCEEEEHHHHHHHHHHHHHHHHHHTTCEEEEEESSCSCCEEEECHHHHHHHHHHHHHHHHHTCCTTCTTCEEEEEEEEE
T ss_pred             CccEEECHHHHHHHHHHHHHHHHHHCCCEEEEEeCCCCCEEEEECHHHHHHHHHHHHHHHHHhhhcCCCcceeeEEEEec
Confidence            56678999999999999999999999999998887666666888999999999999999999997543    66666655


Q ss_pred             cccccccCCCCCCcccCCCCceEEEEEEEecCCCCCcCchhhhhhccccccccccCCCCCcchhHHHHHHHHHHcCCEEE
Q 007434          488 KSESLRDSRAPEFFPVPIENHFYLRVQVKDSGSGISPQDIPNLFTKFAQNQAIALRNSSGSGLGLAICKRFVNLMEGHIW  567 (604)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~~~~g~GlGL~i~~~iv~~~gG~i~  567 (604)
                      ++                    ++.|+|+|||+|||++.++++|+|||+.+.......+|+||||++||++++.|||+|+
T Consensus        82 ~~--------------------~~~i~V~D~G~GI~~~~~~~iF~~F~~~~~~~~~~~~G~GLGL~i~k~iv~~hgG~i~  141 (161)
T d2c2aa2          82 DG--------------------GVLIIVEDNGIGIPDHAKDRIFEQFYRVDSSLTYEVPGTGLGLAITKEIVELHGGRIW  141 (161)
T ss_dssp             TT--------------------EEEEEEEECSSCCCGGGTTGGGSTTCCCC---------CCCTHHHHHHHHHHTTCEEE
T ss_pred             CC--------------------EEEEEEEEcCCCCCHHHHHHhhCCcEEcCCCCCCCCCcccHHHHHHHHHHHHCCCEEE
Confidence            44                    3999999999999999999999999998876666678999999999999999999999


Q ss_pred             EEecCCCceEEEEEEEEec
Q 007434          568 IESEGLGKGCTAIFIVKLG  586 (604)
Q Consensus       568 i~s~~~g~Gt~~~~~lp~~  586 (604)
                      ++|. +|+||+|+|+||..
T Consensus       142 v~s~-~~~Gt~f~i~lP~~  159 (161)
T d2c2aa2         142 VESE-VGKGSRFFVWIPKD  159 (161)
T ss_dssp             EEEE-TTTEEEEEEEEECC
T ss_pred             EEec-CCCeeEEEEEEEcc
Confidence            9999 89999999999974
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} Back     information, alignment and structure
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1i58a_ d.122.1.3 (A:) Histidine kinase CheA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mc0a2 d.110.2.1 (A:402-555) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2aa1 a.30.2.1 (A:232-320) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2k2na1 d.110.2.1 (A:31-200) Sensor protein CYB2465 {Synechococcus sp. [TaxId: 1131]} Back     information, alignment and structure
>d2oola1 d.110.2.1 (A:140-333) Sensor protein PhyB2 {Rhodopseudomonas palustris [TaxId: 1076]} Back     information, alignment and structure
>d2o9ca1 d.110.2.1 (A:135-321) Bacteriophytochrome BphP {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d3c2wa1 d.110.2.1 (A:118-309) Bacteriophytochrome BphP {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2veaa1 d.110.2.1 (A:131-326) Phytochrome-like protein Cph1 {Synechocystis sp. pcc 6803 [TaxId: 1148]} Back     information, alignment and structure
>d1joya_ a.30.2.1 (A:) EnvZ histidine kinase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure